Citrus Sinensis ID: 006909

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620------
Protein Sequence
MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Secondary Structure (PSIPRED)
ccccccccccEEEEcccccccccccccccccccccccEEEEccccccHHHHHcccccccccccccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEEEcccccEEEEEcccccEEEEEccccEEEcccccEEEEEEcccccccccccEEEEcccEEEEEEcccccccEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccEEEEEEccccEEEEEcccccEEEEccccccccccccEEEEEcccccEEEEEEccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEEEcccccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccEEEEEEcccccEEEEEccEEcccccEEEEccccccEEcccccccccccccccccEEEEEEcccccEEEEEEccccEEEcEEccccccccccccccccccEEEccccccEEEEEcccccEEEEEcccccEEEEcccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEcccccccccHHHHHHHHccccccccEEEEcccccHHHHHccccccccccEcccccccccccccHHHHHHcccccEEEEEEcccccEEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEccccccEEEEEEccccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcHccccccccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccEEEEEEEcccccEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEccccEEEEEEEEcccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEc
Coil and Loop (DISEMBL)
mlssdegvddvffdstdclsfeesvvaeeelgpgkldydiwmseprsvKERRSsmnradenlncfdremdSEANCMVDELEQDQMNECVVtlegesngfsqsvdkfenpfpeckgvniKKVKKLWKRIISMKKRNVetcmsekrkpnsekpkankMEVKQNKKKCMEFTALYTSQEIQAHkgciwtlkfspdgrylasggedgVVRIWHVTSVAAScksftddggfgsnakegkikfgkkksshvpvvipdevfqieesplqelhghkgdvldlawsnsNYLLSCSMDKTVRMWQVGCnqclnvfdhhnyvtcvqfnpiddnyfisgsidgkVRIWGVCEKRVVDWADVRDVISAIcyipdgkgfiVGSITGTCHFykasgndlklekvdfhdrkktsgnkitgiqfsrdeSQRIMITSEDSKLRILDGVDVihkfkglpksgsqmsasFTTTGKHIISIGDDCRVYVWnydelcfpsskqknsvrsCEHFFSEGVSvavqwpgigteqkslcssslrdcsqkwdnletapwirdserfslgswfsndgpcrgsatwpaeklplwdvtidsdgycqdpqqqRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMiktfhnyglpirl
Flexible Loop (DISEMBL)
mlssdegvddvffdstDCLSFeesvvaeeelgpgkldydiwmseprsvkerrssmnradenlnCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKfenpfpeckgvnikkvkkLWKRIISmkkrnvetcmsekrkpnsekpkankmevkQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAScksftddggfgsnAKEGKikfgkkksshvpvvIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGndlklekvdfhdrkktsgnkitgiqfsrdesqRIMITsedsklrilDGVDVIHKFkglpksgsqmSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Low Complexity Region (SEG)
MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAkegkikfgkkkSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCqdpqqqrlqqqCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Disordered region (IsUnstruct)
*********DVFFDSTDCLSFEESVVAEEELGPGKLDYDIWM********************************************ECVVTL*************FENPFPECKGVNIKKVKKLWKRIISMK********************************CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF*****************HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF*************************I****SKLRILDGVDVIHKFKGL*********SFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLP***
Disordered Region (DISOPRED)
*********DVFFDST************************************************FDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVD***************KVKKLWKRIISMKKR**ETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG*******************VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDG*************CLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Disordered Region (DISEMBL)
********DDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEP**********NRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVE**********************QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS*********CEHFFSEGVSVAVQWPGIGTE***********CSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Disordered Region (DISPRO)
********DDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRS************ENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	626	2.2.26 [Sep-21-2011]
Q6LA54	933	Uncharacterized WD repeat	yes	no	0.421	0.282	0.360	7e-48
Q9XSC3	912	WD repeat-containing prot	yes	no	0.485	0.333	0.338	7e-46
Q498F0	912	WD repeat-containing prot	N/A	no	0.525	0.360	0.329	8e-46
Q5JSH3	913	WD repeat-containing prot	yes	no	0.477	0.327	0.339	1e-44
Q9R037	908	WD repeat-containing prot	yes	no	0.517	0.356	0.323	2e-44
Q6NVE8	915	WD repeat-containing prot	yes	no	0.477	0.326	0.336	3e-44
O60136	586	Uncharacterized WD repeat	no	no	0.519	0.554	0.268	2e-39
Q03177	834	WD repeat-containing prot	yes	no	0.503	0.377	0.311	6e-39
P32330	852	2-deoxy-glucose resistant	no	no	0.448	0.329	0.272	1e-22
Q498M4	334	WD repeat-containing prot	no	no	0.439	0.823	0.274	2e-20

>sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2

 Score =  192 bits (488), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 41/305 (13%)

Query: 183 CIWTLKFSPDGRYLASGGEDGVVRIW------HVTSVAA-SCKSFTDDGGFGSNAKEGKI 235
            IW +KFS DGRYLA GG+D ++RIW      H  SVA+ +C S  ++      A     
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSEHARSVASETCSSDPNNPKLNLKA----- 372

Query: 236 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 295
                     PV          E+P++E  GH  D+LDL+WS +N+LLS SMDKT R+W 
Sbjct: 373 ----------PV--------FSEAPIREYAGHTADILDLSWSRNNFLLSSSMDKTARLWH 414

Query: 296 VGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA 355
                CL  F+H ++VT + F+P DD +F+SGS+D K+R+W + EK V  W ++ ++I+A
Sbjct: 415 PVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFWNELPELITA 474

Query: 356 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQFSRDE--- 411
           + + PDG   I G+  G C FY   G   + +      R K + G+K+TGIQ +R +   
Sbjct: 475 VAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKVTGIQ-TRTQMID 533

Query: 412 ----SQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 465
                  +++T+ DS++RI +  D  +  KFKG   + SQ  A F   G ++I   +D +
Sbjct: 534 NIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKGHANAQSQNRAYFDDDGNYVICGSEDHQ 593

Query: 466 VYVWN 470
           V++W+
Sbjct: 594 VFIWD 598

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1

 Score =  185 bits (470), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 183/340 (53%), Gaps = 36/340 (10%)

Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS----FTDDGGFGSNAKEGKI 235
           H G +WT+KFS  GR LAS G+D VVRIW + +      +    +  +G    +  +  +
Sbjct: 509 HMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRVSPSPSQESL 568

Query: 236 KFGKKKSSHVPVVIPDEVFQIEESPLQE-----LHGHKGDVLDLAWSNSNYLLSCSMDKT 290
              K  +        DE    + +P ++       GH  D+LDL+WS + +LLS SMDKT
Sbjct: 569 NSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKT 628

Query: 291 VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV- 349
           VR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  W +V 
Sbjct: 629 VRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVD 688

Query: 350 --RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR--------KKTSG 399
               +I+A  +  +GK  ++G+  G C FY         E + +H +        +   G
Sbjct: 689 GQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRGRNKVG 741

Query: 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHI 457
            KITGI+    E+ +I++TS DS++R+ D  D  +  K+KG   S SQ+ ASF+    ++
Sbjct: 742 RKITGIEPLPGEN-KILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFNYL 800

Query: 458 ISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCEHFFSEGV 496
           +S  +D  VY+W+ Y +L      +  SVR   + F EG+
Sbjct: 801 VSGSEDKYVYIWSTYHDLS-----KFTSVRRDRNDFWEGI 835

Downstream effector for RAB11. May be involved in vesicle recycling.

Bos taurus (taxid: 9913)

>sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1

 Score =  185 bits (470), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 193/367 (52%), Gaps = 38/367 (10%)

Query: 155 KMEVKQNKKKCMEFTALYTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV 213
           K +     K   +F  +   Q++   H G +WT+KFS  GR LAS G+D VVRIW + + 
Sbjct: 486 KFKAAHGFKGPYDFEQIKVVQDLSGEHVGAVWTMKFSHCGRLLASAGQDNVVRIWVLKNA 545

Query: 214 AASCKS----FTDDGGFGSNAKEGKIKFGKKKS-----SHVPVVIPDEV-FQIEESPLQE 263
                +    +  +G    +  +  +   K  +     S    V PD+      + P  +
Sbjct: 546 FDYFNNMRIKYNTEGRVSPSPSQESLNSSKSDTDGGVFSGTDDVDPDDKNAPFRQVPFCK 605

Query: 264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 323
             GH  D+LDL+WS + +LLS SMDKTVR+W +   +CL  F H ++VT + F+P DD Y
Sbjct: 606 YKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRY 665

Query: 324 FISGSIDGKVRIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHFYKAS 380
           F+SGS+DGK+R+W + +K+V  W ++     +I+A  +  +GK  ++G+  G C FY   
Sbjct: 666 FLSGSLDGKLRLWNIPDKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDT- 724

Query: 381 GNDLKLEKVDFHDR--------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD- 431
                 E + +H +        +   G KITGI+    E+ +I++TS DS++R+ D  D 
Sbjct: 725 ------EHLKYHTQIHVRSTRGRNRVGRKITGIEPLPGEN-KILVTSNDSRIRLYDLRDL 777

Query: 432 -VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCE 489
            +  K+KG   S SQ+ ASF+    +I+S  +D  VY+W+ Y +L      +  SVR   
Sbjct: 778 SLSMKYKGCVNSSSQIKASFSHDFTYIVSGSEDKYVYIWSTYHDLS-----KFTSVRRDR 832

Query: 490 HFFSEGV 496
           + F EG+
Sbjct: 833 NDFWEGI 839

Downstream effector for rab11. May be involved in vesicle recycling.

Xenopus laevis (taxid: 8355)

>sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1

 Score =  181 bits (460), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 183/345 (53%), Gaps = 46/345 (13%)

Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 239
           H G +WT+KFS  GR LAS G+D VVRIW + +       + ++     N  EG++    
Sbjct: 510 HMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAF----DYFNNMRMKYNT-EGRVSPSP 564

Query: 240 KKSSHVPVVI-------------PDEV-FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 285
            + S                   PD+      + P  +  GH  D+LDL+WS + +LLS 
Sbjct: 565 SQESLSSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSS 624

Query: 286 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 345
           SMDKTVR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  
Sbjct: 625 SMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVAL 684

Query: 346 WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------- 394
           W +V     +I+A  +  +GK  ++G+  G C FY         E + +H +        
Sbjct: 685 WNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRG 737

Query: 395 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTT 452
           +   G KITGI+    E+ +I++TS DS++R+ D  D  +  K+KG   S SQ+ ASF+ 
Sbjct: 738 RNKVGRKITGIEPLPGEN-KILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSH 796

Query: 453 TGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCEHFFSEGV 496
              +++S  +D  VY+W+ Y +L      +  SVR   + F EG+
Sbjct: 797 DFTYLVSGSEDKYVYIWSTYHDLS-----KFTSVRRDRNDFWEGI 836

Downstream effector for RAB11. May be involved in vesicle recycling.

Homo sapiens (taxid: 9606)

>sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1

 Score =  181 bits (459), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 192/371 (51%), Gaps = 47/371 (12%)

Query: 155 KMEVKQNKKKCMEFTALYTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV 213
           K +     K   +F  +   Q++   H G +WT+KFS  GR LAS G+D +VRIW + + 
Sbjct: 479 KFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNA 538

Query: 214 AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-------------PDEV-FQIEES 259
                 + ++     N  EG++     + S                   PD+      + 
Sbjct: 539 F----DYFNNMRMKYNT-EGRVSPSPSQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQR 593

Query: 260 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI 319
           P  +  GH  D+LDL+WS + +LLS SMDKTVR+W +   +CL  F H ++VT + F+P 
Sbjct: 594 PFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPR 653

Query: 320 DDNYFISGSIDGKVRIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHF 376
           DD YF+SGS+DGK+R+W + +K+V  W +V     +I+A  +  +GK  ++G+  G C F
Sbjct: 654 DDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIF 713

Query: 377 YKASGNDLKLEKVDFHDR--------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 428
           Y         E + +H +        +   G KITGI+    E+ +I++TS DS++R+ D
Sbjct: 714 YDT-------EHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGEN-KILVTSNDSRIRLYD 765

Query: 429 GVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSV 485
             D  +  K+KG   S SQ+ ASF+    +++S  +D  VY+W+ Y +L      +  SV
Sbjct: 766 LRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTYHDLS-----KFTSV 820

Query: 486 RSCEHFFSEGV 496
           R   + F EG+
Sbjct: 821 RRDRNDFWEGI 831

Downstream effector for RAB11. May be involved in vesicle recycling.

Rattus norvegicus (taxid: 10116)

>sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1

 Score =  180 bits (457), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 183/345 (53%), Gaps = 46/345 (13%)

Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 239
           H G +WT+KFS  GR LAS G+D +VRIW + +       + ++     N  EG++    
Sbjct: 512 HMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNAF----DYFNNMRMKYNT-EGRVSPSP 566

Query: 240 KKSSHVPVVI-------------PDEV-FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 285
            + S                   PD+      + P  +  GH  D+LDL+WS + +LLS 
Sbjct: 567 SQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSS 626

Query: 286 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 345
           SMDKTVR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  
Sbjct: 627 SMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVAL 686

Query: 346 WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------- 394
           W +V     +I+A  +  +GK  ++G+  G C FY         E + +H +        
Sbjct: 687 WNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRG 739

Query: 395 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTT 452
           +   G KITGI+    E+ +I++TS DS++R+ D  D  +  K+KG   S SQ+ ASF+ 
Sbjct: 740 RNKVGRKITGIEPLPGEN-KILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSH 798

Query: 453 TGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCEHFFSEGV 496
              +++S  +D  VY+W+ Y +L      +  SVR   + F EG+
Sbjct: 799 DFTYLVSGSEDKYVYIWSTYHDLS-----KFTSVRRDRNDFWEGI 838

Downstream effector for RAB11. May be involved in vesicle recycling.

Mus musculus (taxid: 10090)

>sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 167/357 (46%), Gaps = 32/357 (8%)

Query: 143 KRKPNSEKPKANKMEVKQ------NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYL 196
           KR P  E     K+ V Q        K    F       E    K  +W  + S  G+YL
Sbjct: 142 KRMPKKEITLNQKLYVSQVIGPADAPKSKTIFGKRIMQWEPSQFKESVWASEISKSGKYL 201

Query: 197 ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256
           A+ G+D ++R+W V       ++           KEG    G+          P  +F+ 
Sbjct: 202 ATAGKDAIIRVWKVIETPERRETL---------LKEGPQSCGR-------FFTPSSIFEP 245

Query: 257 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 316
           E  P+ E  GH  +VL ++WS +++LL+ S D+TVR+W     + L VF H+  VTCV F
Sbjct: 246 E--PVLECVGHNAEVLSISWSKNDFLLTSSADRTVRLWHPKSTKSLAVFRHNEIVTCVAF 303

Query: 317 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 376
           +PIDD YF+SGS+D K+++W +   +++ W ++  V+S IC+ PDG+  +VG   G C  
Sbjct: 304 HPIDDRYFVSGSLDCKIQLWSILRHKILHWTELEYVVSTICFYPDGESIVVGMFYGLCAI 363

Query: 377 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFS------RDESQRIMITSEDSKLRILDGV 430
           Y+          +  H   +    ++TG+Q +            +++++ D+ +R+ + V
Sbjct: 364 YETKNLQYVSSWLIHHSPSRNKKCRVTGLQCASIIPNDSKSDNVVLVSTNDNAIRLYNTV 423

Query: 431 D--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 485
              ++ K     +   ++ +  +    +IIS  D   V +W+       ++ +K SV
Sbjct: 424 THALVLKLSDAHRVNGRVLSRLSEDNSYIISGSDTNEVVLWHIPNKVLINASRKRSV 480

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1

 Score =  162 bits (411), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 184/379 (48%), Gaps = 64/379 (16%)

Query: 150 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKG---------------CIWTLKFSPDGR 194
           +PK  KM   + +K   +F  L+ +QE+ A++G                IW+ KFS DG+
Sbjct: 129 EPKYIKM--LKRRKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGK 186

Query: 195 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE-- 252
           ++A+G +DG +RIW V  + +  +    D    SN KE + K  + K     +  P E  
Sbjct: 187 FMATGSKDGKIRIWKV--IGSPVERAELDSSAESN-KEARAKSMRIKQQVSSLNNPKEKQ 243

Query: 253 -----VFQIEE--------------SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRM 293
                  + EE              +PL+    H  DVLD+ WS +N++LS SMDKTV++
Sbjct: 244 FLDSATEKYEEKEKLLNLYAPVFHPTPLRLYKEHVQDVLDINWSKNNFILSASMDKTVKL 303

Query: 294 WQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI 353
           W       L  F H ++VTCV+F+P DD +FISG +D K R+W + +  V    D +D+I
Sbjct: 304 WHPDRKNSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQDLI 363

Query: 354 SAICYIP-DGKGFIVGSITGTCHFYKASG---------NDLKLEKVDFH------DRKKT 397
           +++   P +GK  I+G+  G  H     G          D + ++ + H      D K  
Sbjct: 364 TSVTLSPEEGKYTIIGTFNGYVHILMTRGLTPVSSFHVADRQTQEQNAHVMVTETDSKIR 423

Query: 398 SGNKITGIQFSR---DESQRIMITSEDSKLRILD--GVDVIHKFKGLPKSGSQMSASFTT 452
            G ++TG+Q  R   D S R+++TS DS++RI D     ++   KG     SQ  A  + 
Sbjct: 424 HGPRVTGLQAFRSQLDNSFRLVVTSNDSRIRIFDLEQRKLLEVLKGFHSGSSQHKAQLSI 483

Query: 453 -TGKHI-ISIGDDCRVYVW 469
             G+ I ++  DD  VY W
Sbjct: 484 WHGQPIVVNSSDDHWVYGW 502

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 150/341 (43%), Gaps = 60/341 (17%)

Query: 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT--------------SVAAS---------- 216
           K  I    FS DG+Y+  G +DG + +W V               SV+AS          
Sbjct: 173 KNSICCCTFSHDGKYMVIGCKDGSLHLWKVINSPVKRSEMGRSEKSVSASRANSLKIQRH 232

Query: 217 -CKSFTDDGGFGSNAKEGKIKF-GKKKSSHV--PVVIPDEVFQIEESPLQELHGHKGDVL 272
                + +G   SN  +   +F G  K  H+  PV   D VF++          H  D+L
Sbjct: 233 LASISSHNGSISSNDLKPSDQFEGPSKQLHLYAPVFYSD-VFRV-------FMEHALDIL 284

Query: 273 DLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 332
           D  WS + +L++ SMDKT ++W       L  F H ++VT   F P DD + I+G +D +
Sbjct: 285 DANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIFFPNDDRFIITGCLDHR 344

Query: 333 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCH------------FYKA 379
            R+W + +  V    D +D+I+++   P G  + I+G+  G  +            F+ +
Sbjct: 345 CRLWSILDNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNGYIYVLLTHGLKFVSSFHVS 404

Query: 380 SGNDLKLEKVDFHDR----KKTSGNKITGIQ--FSR-DESQRIMITSEDSKLRILDGVD- 431
             +     K  FH      K   G +ITG+Q  FS+ D++ R+++T+ DSK++I D  + 
Sbjct: 405 DKSTQGTTKNSFHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLIVTTNDSKIQIFDLNEK 464

Query: 432 -VIHKFKGLPKSGSQMSASFTTTGKH--IISIGDDCRVYVW 469
             +  FKG     S+    F        + +  DD   Y W
Sbjct: 465 KPLELFKGFQSGSSRHRGQFLMMKNEPVVFTGSDDHWFYTW 505

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 150/346 (43%), Gaps = 71/346 (20%)

Query: 132 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 191
           KK   E   ++   P+S   ++    VK N    ++FT       +  H   + ++KFSP
Sbjct: 6   KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 55

Query: 192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251
           +G +LAS   D +++IW                     A +GK +               
Sbjct: 56  NGEWLASSSADKLIKIW--------------------GAYDGKFE--------------- 80

Query: 252 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 309
                     + + GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H N
Sbjct: 81  ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130

Query: 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 368
           YV C  FNP   N  +SGS D  VRIW V   + +       D +SA+ +  DG   +  
Sbjct: 131 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189

Query: 369 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427
           S  G C  +  ASG  LK    D           ++ ++FS +  + I+  + D+ L++ 
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 241

Query: 428 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 470
           D      +  + G       + A+F+ T GK I+S  +D  VY+WN
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
225431541	674	PREDICTED: WD repeat-containing protein	0.987	0.916	0.607	0.0
296088582	668	unnamed protein product [Vitis vinifera]	0.963	0.902	0.596	0.0
255552366	654	WD-repeat protein, putative [Ricinus com	0.971	0.929	0.555	0.0
224131190	655	predicted protein [Populus trichocarpa]	0.971	0.928	0.543	0.0
449461887	668	PREDICTED: uncharacterized protein LOC10	0.982	0.920	0.516	0.0
356511161	675	PREDICTED: WD repeat-containing protein	0.982	0.911	0.494	1e-176
356528542	617	PREDICTED: uncharacterized protein LOC10	0.835	0.847	0.544	1e-164
356518745	665	PREDICTED: uncharacterized protein LOC10	0.974	0.917	0.491	1e-163
356507482	668	PREDICTED: uncharacterized protein LOC10	0.974	0.913	0.480	1e-161
224093348	550	predicted protein [Populus trichocarpa]	0.731	0.832	0.546	1e-159

>gi|225431541|ref|XP_002275497.1| PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/682 (60%), Positives = 476/682 (69%), Gaps = 64/682 (9%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRSSMNRA-- 58
           ML SDEG DDVFFDS D LS EESV A+EELG GKLDY+IW +EPRSV+ERR S  R   
Sbjct: 1   MLRSDEGEDDVFFDSMDHLSCEESVRAKEELGCGKLDYEIWRNEPRSVRERRESFLRGMG 60

Query: 59  ------------------------------------------DENLNCFDREMDSEANCM 76
                                                     +EN  C  RE D  ANCM
Sbjct: 61  FVEFVPEHDKPFGDPPEMVELGRITECSGAVSSSSVSSINCTEENSVCSGREGDVGANCM 120

Query: 77  VDELEQDQMNECVVTLEGESNGFSQSVDKFE-----NPFPECKGVNI-KKVKKLWKRIIS 130
           VD L Q Q  +  +  EGE+ G   S  +FE          CK + + KK +  WKR IS
Sbjct: 121 VDALNQQQSEKQNIDFEGETRGLLPSAQEFECNEGQACVEGCKNLGMDKKTRSWWKRFIS 180

Query: 131 MKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFS 190
            +K       S+  K  SE PK N+M+V+QNKK+CMEFTAL   QEIQAHKG IWT+KFS
Sbjct: 181 KRKGRDAASASQVSKQTSETPKINQMKVRQNKKRCMEFTALCIGQEIQAHKGFIWTMKFS 240

Query: 191 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250
           PDG+YLASGGEDGVVRIW VTS  ASCK  T +G FG   K+GK  FG+KK S+ PVVIP
Sbjct: 241 PDGQYLASGGEDGVVRIWCVTSTDASCKYLTTEGNFGCEVKDGKSSFGRKKPSYAPVVIP 300

Query: 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 310
           D++FQIEESPLQE HGH  DVLDLAWS SN LLS SMDKTVR+WQVG ++CLNVF H+NY
Sbjct: 301 DKIFQIEESPLQEFHGHASDVLDLAWSKSNSLLSSSMDKTVRLWQVGHDECLNVFRHNNY 360

Query: 311 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI 370
           VTC+QFNP+DDNYFISGSIDGKVRIWGV E+RVVDWADVRDVI+AICY PDGKGFIVGS+
Sbjct: 361 VTCIQFNPVDDNYFISGSIDGKVRIWGVSERRVVDWADVRDVITAICYQPDGKGFIVGSV 420

Query: 371 TGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 429
           TGTC FY ASGN L+L+ KV+FH RKKTSGNKITGIQFS++ESQ++MITSEDSKLRILDG
Sbjct: 421 TGTCCFYNASGNHLQLDAKVNFHGRKKTSGNKITGIQFSQEESQKVMITSEDSKLRILDG 480

Query: 430 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 489
           +DV++K+KGL KSGSQMSASFT+TG+HI+S+G+D RVYVWNYD  C  SSKQ  SV+SCE
Sbjct: 481 IDVVYKYKGLRKSGSQMSASFTSTGRHIVSVGEDSRVYVWNYDGFCSQSSKQMKSVQSCE 540

Query: 490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG 549
           HFF EGVSVA+ W   G E+K L S SLR      D+LE   WIRDSERFSLG+WFS DG
Sbjct: 541 HFFFEGVSVAIPWSDTGAEKKGLGSDSLRQSPPTQDHLEATSWIRDSERFSLGNWFSMDG 600

Query: 550 PCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR-----AISATWGLV 604
            CRG ATWP EKLPLW           +        Q     +DV+     A+S  WGLV
Sbjct: 601 SCRGGATWPEEKLPLWGAP--------EHDHHHHDHQQQQQHNDVQNHNHLALSEAWGLV 652

Query: 605 IVTAGCDGMIKTFHNYGLPIRL 626
           I TAG DG I+TFHNYGLP+RL
Sbjct: 653 IATAGWDGTIRTFHNYGLPVRL 674

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088582|emb|CBI37573.3| unnamed protein product [Vitis vinifera]

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/679 (59%), Positives = 466/679 (68%), Gaps = 76/679 (11%)

Query: 4   SDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRSSMNRA----- 58
           SDEG DDVFFDS D LS EESV A+EELG GKLDY+IW +EPRSV+ERR S  R      
Sbjct: 10  SDEGEDDVFFDSMDHLSCEESVRAKEELGCGKLDYEIWRNEPRSVRERRESFLRGMGFVE 69

Query: 59  ---------------------------------------DENLNCFDREMDSEANCMVDE 79
                                                  +EN  C  RE D  ANCMVD 
Sbjct: 70  FVPEHDKPFGDPPEMVELGRITECSGAVSSSSVSSINCTEENSVCSGREGDVGANCMVDA 129

Query: 80  LEQDQMNECVVTLEGESNGFSQSVDKFE-----NPFPECKGVNI-KKVKKLWKRIISMKK 133
           L Q Q  +  +  EGE+ G   S  +FE          CK + + KK +  WKR IS +K
Sbjct: 130 LNQQQSEKQNIDFEGETRGLLPSAQEFECNEGQACVEGCKNLGMDKKTRSWWKRFISKRK 189

Query: 134 RNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDG 193
                  S+  K  SE PK N+M+V+QNKK+CMEFTAL   QEIQAHKG IWT+KFSPDG
Sbjct: 190 GRDAASASQVSKQTSETPKINQMKVRQNKKRCMEFTALCIGQEIQAHKGFIWTMKFSPDG 249

Query: 194 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253
           +YLASGGEDGVVRIW VTS  ASCK  T +G FG             + S+ PVVIPD++
Sbjct: 250 QYLASGGEDGVVRIWCVTSTDASCKYLTTEGNFGC------------EPSYAPVVIPDKI 297

Query: 254 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC 313
           FQIEESPLQE HGH  DVLDLAWS SN LLS SMDKTVR+WQVG ++CLNVF H+NYVTC
Sbjct: 298 FQIEESPLQEFHGHASDVLDLAWSKSNSLLSSSMDKTVRLWQVGHDECLNVFRHNNYVTC 357

Query: 314 VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT 373
           +QFNP+DDNYFISGSIDGKVRIWGV E+RVVDWADVRDVI+AICY PDGKGFIVGS+TGT
Sbjct: 358 IQFNPVDDNYFISGSIDGKVRIWGVSERRVVDWADVRDVITAICYQPDGKGFIVGSVTGT 417

Query: 374 CHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 432
           C FY ASGN L+L+ KV+FH RKKTSGNKITGIQFS++ESQ++MITSEDSKLRILDG+DV
Sbjct: 418 CCFYNASGNHLQLDAKVNFHGRKKTSGNKITGIQFSQEESQKVMITSEDSKLRILDGIDV 477

Query: 433 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 492
           ++K+KGL KSGSQMSASFT+TG+HI+S+G+D RVYVWNYD  C  SSKQ  SV+SCEHFF
Sbjct: 478 VYKYKGLRKSGSQMSASFTSTGRHIVSVGEDSRVYVWNYDGFCSQSSKQMKSVQSCEHFF 537

Query: 493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCR 552
            EGVSVA+ W   G E+K L S SLR      D+LE   WIRDSERFSLG+WFS DG CR
Sbjct: 538 FEGVSVAIPWSDTGAEKKGLGSDSLRQSPPTQDHLEATSWIRDSERFSLGNWFSMDGSCR 597

Query: 553 GSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR-----AISATWGLVIVT 607
           G ATWP EKLPLW           +        Q     +DV+     A+S  WGLVI T
Sbjct: 598 GGATWPEEKLPLWGAP--------EHDHHHHDHQQQQQHNDVQNHNHLALSEAWGLVIAT 649

Query: 608 AGCDGMIKTFHNYGLPIRL 626
           AG DG I+TFHNYGLP+RL
Sbjct: 650 AGWDGTIRTFHNYGLPVRL 668

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552366|ref|XP_002517227.1| WD-repeat protein, putative [Ricinus communis] gi|223543598|gb|EEF45127.1| WD-repeat protein, putative [Ricinus communis]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/672 (55%), Positives = 470/672 (69%), Gaps = 64/672 (9%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRSS------ 54
           ML+ DEG DD+FFDS DCLS EES+V +E        Y+IW++EP+SVKERR S      
Sbjct: 1   MLNFDEGEDDLFFDSVDCLSPEESIVNKE--------YEIWLNEPQSVKERRQSFLCEMG 52

Query: 55  --------------MNRADE-------------------NLNCFDREMDSEANCMVDELE 81
                         + R  E                   NL+C  RE +SEANCM+D+++
Sbjct: 53  LTELACKSDNEIIGLQRISEFSGAVSSSSSLRTYGEEEGNLDCCGRESNSEANCMIDDMK 112

Query: 82  QDQMNECVVTLEGESNGFSQSVDKFENPFPE---CKGVNIKKVKKLWKRIISMKKRNVET 138
           Q Q+++ +V  E E++    SV + ++   E         +K+K  WK  +  +K+   T
Sbjct: 113 QYQLDKPIVGCENENSESLTSVSECDHSDSEQYRSYDAGKQKMKSWWKFFVQKRKQKECT 172

Query: 139 CMSEKRKPNSEKP--KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYL 196
           C+S+  + NS+ P  + N+++VKQNKK+CMEFT +Y  QE++AHKG IWT+KFSPDG+YL
Sbjct: 173 CVSKISELNSDTPTIETNRIKVKQNKKRCMEFTGVYMQQELRAHKGFIWTMKFSPDGQYL 232

Query: 197 ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256
           A+GGEDG+VRIW VTSV    KSF  +  F  + KEGK    K+K SH  VVIP+ +FQ+
Sbjct: 233 ATGGEDGIVRIWQVTSVNGCQKSFASEDSF--DMKEGK---SKRKMSHASVVIPERIFQL 287

Query: 257 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 316
           EESP+ E +GH  DVLDLAWSNSN LLS S DKTVR+WQVG + CLN+F H +YVTC+QF
Sbjct: 288 EESPVHEFYGHSSDVLDLAWSNSNCLLSSSKDKTVRLWQVGSDHCLNIFHHISYVTCIQF 347

Query: 317 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 376
           NP+++NYFISGSIDGKVRIWGVCE+RVVDW D  DV SAICY PDGKGF+VGSITGTC F
Sbjct: 348 NPVNENYFISGSIDGKVRIWGVCEQRVVDWVDAHDVTSAICYQPDGKGFVVGSITGTCRF 407

Query: 377 YKASGNDLKL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK 435
           Y+ASGNDL+L  ++    RK+T+GN+ITGIQFS++  QR+MI+SEDSKLRILDGVD++HK
Sbjct: 408 YEASGNDLQLGAEIHVQGRKRTAGNRITGIQFSQERPQRVMISSEDSKLRILDGVDIVHK 467

Query: 436 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG 495
           +KGLPKSGSQMSASFT+ GKHIIS+G+DCRVYVW+YDELC PSSK K SVRSCEHFFSEG
Sbjct: 468 YKGLPKSGSQMSASFTSGGKHIISVGEDCRVYVWDYDELCTPSSKHKKSVRSCEHFFSEG 527

Query: 496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG-S 554
           VS+AV W G+  E K + S S+     +  + E     RDSERFSLG+WF  DGPCRG S
Sbjct: 528 VSIAVPWSGMRKELKDVDSGSIHS---RMPSEEGTSRRRDSERFSLGNWFFIDGPCRGSS 584

Query: 555 ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMI 614
           ATWP EKLP WD+ + ++  CQ    +  QQQ +        +   WGLVI TAG DG I
Sbjct: 585 ATWPEEKLPHWDIAM-AEEECQHQHYENFQQQLIKTHGHT-TLPNAWGLVIATAGWDGTI 642

Query: 615 KTFHNYGLPIRL 626
           +TFHNYGLP+RL
Sbjct: 643 RTFHNYGLPVRL 654

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131190|ref|XP_002328477.1| predicted protein [Populus trichocarpa] gi|222838192|gb|EEE76557.1| predicted protein [Populus trichocarpa]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/672 (54%), Positives = 456/672 (67%), Gaps = 64/672 (9%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRSSMNR--- 57
           MLSSDEG  D+F+DS D            +LG  +L+YDIW++EP+SV+ERR    R   
Sbjct: 1   MLSSDEGKRDLFYDSVDYF----------DLGCDQLEYDIWLTEPQSVEERRQGFLRGMG 50

Query: 58  ------------------------ADENLNCFD------------REMDSEANCMVDELE 81
                                   +  ++ C +            RE +SEANC++D++ 
Sbjct: 51  LDGFAFKRHENTGLERITECSGAVSSSSVPCTNVEEVNVVSCSAGREENSEANCVIDQMS 110

Query: 82  QDQMNECVVTLEGESNGFSQSVDKFENPFPE-CKGVNIKK--VKKLWKRIISM-KKRNVE 137
           +D+M++  V  E E+ G    +   E    E CK  +  K  +K  WK  +   K+  V 
Sbjct: 111 KDKMDKSDVASENENIGPLLDLQGCEQCEEEKCKKCDSGKSIMKSWWKHFLKKSKEERVG 170

Query: 138 TCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLA 197
            C+S   K ++E PK N+ +VKQNKK CMEFT +Y  QEIQAHKG IWT+KFSPDG+YLA
Sbjct: 171 RCVSGVSKLDTEAPKTNRTKVKQNKKGCMEFTGVYMRQEIQAHKGFIWTMKFSPDGQYLA 230

Query: 198 SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI-KFGKKKSSHVPVVIPDEVFQI 256
           +GGED ++R+W VT V +SCKSF  +G   SN KE K      KK  +  VVIP++VFQI
Sbjct: 231 TGGEDRIIRVWRVTLVDSSCKSFPSEGHCDSNLKEAKSNNLSTKKRMYSSVVIPEKVFQI 290

Query: 257 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 316
           EE+PLQE HGH  ++LDLAWS+SN+LLS SMDKTVR+W++GCN  LN+F H NYVTC+QF
Sbjct: 291 EETPLQEFHGHASEILDLAWSDSNHLLSSSMDKTVRLWRLGCNHSLNIFRHSNYVTCIQF 350

Query: 317 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 376
           NP+D NYFISGSIDGKVRIWGV EKRVV W DVRDVISAI Y PDG+GF+VG+I GTC F
Sbjct: 351 NPVDKNYFISGSIDGKVRIWGVSEKRVVHWTDVRDVISAISYQPDGRGFVVGTIKGTCRF 410

Query: 377 YKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK 435
           Y+ SG DL+LE +V    R++TSGN+IT IQFS++   R+MITSEDSK+R+ DGVD+++K
Sbjct: 411 YEVSGTDLQLEAEVHIQGRRRTSGNRITSIQFSQEICPRVMITSEDSKVRVFDGVDIVNK 470

Query: 436 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG 495
           FKGLPKSGSQMSASFT+ G+HIIS+G+DCRVYVWNYD LC   SK   SV+SCE FFSEG
Sbjct: 471 FKGLPKSGSQMSASFTSNGRHIISVGEDCRVYVWNYDGLCTSWSKHIKSVKSCEFFFSEG 530

Query: 496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS- 554
           VSVAV W G GTE + L   S R  ++     ETA W +DSERFSLGSWF  DG CRGS 
Sbjct: 531 VSVAVPWSGTGTEVRGL--GSRRSLTE-----ETASWRKDSERFSLGSWFFMDGRCRGSY 583

Query: 555 ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMI 614
           ATWP EKLP+WDV +    Y     +   QQQC+N+ D + ++S  WGLVIVTAG DG I
Sbjct: 584 ATWPEEKLPMWDVPVLDAEYQNQQIKSLHQQQCVNSNDHI-SLSEAWGLVIVTAGWDGKI 642

Query: 615 KTFHNYGLPIRL 626
           + FHNYGLPI L
Sbjct: 643 RAFHNYGLPIML 654

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461887|ref|XP_004148673.1| PREDICTED: uncharacterized protein LOC101207772 [Cucumis sativus] gi|449507515|ref|XP_004163054.1| PREDICTED: uncharacterized LOC101207772 [Cucumis sativus]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/679 (51%), Positives = 440/679 (64%), Gaps = 64/679 (9%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRSSMNRADE 60
           MLSSD G  DVFFDS D L  EES+VAEE     KL Y+IWMSEP+S+K+RR    R  +
Sbjct: 1   MLSSD-GDADVFFDSEDYLPLEESLVAEE-ADFSKLGYEIWMSEPQSIKKRR---ERFLQ 55

Query: 61  NLNCFDREMDSEANCMVD----------ELEQDQMNEC---------------------V 89
            +   D    S + C  D           +E +++ EC                     V
Sbjct: 56  EVGFVD--FASSSTCAQDSEIESSCSSERMELERLTECSGAVSSSDYTPSCNVEENDLVV 113

Query: 90  VTLEGESNGFSQSVDK---------FENPFPE-----CKGVNIKKVKKL--WKRIISMKK 133
              E +S  F               F  P  E     C+  ++ K K L  WK   +   
Sbjct: 114 CHNEMQSAEFDNEATSRLSSVSDSSFRRPQGEANVEACQDADVGKRKILTWWKSFKNKAA 173

Query: 134 RNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDG 193
           R      S + + NS K ++ +M+V Q+KK+C EF+ALY  Q+I AHKG IWT+KFSPDG
Sbjct: 174 RRRSADFSRESELNSPKSQSCRMKVYQHKKRCSEFSALYMRQQICAHKGLIWTMKFSPDG 233

Query: 194 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253
           +YLASGGEDGVVRIW VT   AS +   DDG + +  KEGK  F  K      VVIP++V
Sbjct: 234 KYLASGGEDGVVRIWRVTYANASSEFLADDGNYNTKPKEGKSSFSSKPLRFATVVIPEKV 293

Query: 254 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC 313
           FQI+E P+QELHGH  D+LD+AWS SN LLS S DKTVR+WQV  +QCLNVF H NYVTC
Sbjct: 294 FQIDELPIQELHGHSSDILDIAWSTSNCLLSSSKDKTVRLWQVSSDQCLNVFHHKNYVTC 353

Query: 314 VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT 373
           VQFNP+D+N+F+SGSIDGK+RIWGV ++RVVDWAD+RDVI+A+ Y PDGKGF VGSITGT
Sbjct: 354 VQFNPMDENFFVSGSIDGKIRIWGVKKQRVVDWADIRDVITAVSYRPDGKGFAVGSITGT 413

Query: 374 CHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 432
           C FY+ SG+ L L  +++   RKK SG +ITGIQF R+ SQR+MITSEDSK+RI +G ++
Sbjct: 414 CRFYETSGDYLHLSAQINVQGRKKASGKRITGIQFFRENSQRVMITSEDSKVRIFEGTEI 473

Query: 433 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 492
           IHK+KGLPKSGSQMSASFT  GKHI+S+G+D RVY+WNYD L  PSSK+  S +SCEHFF
Sbjct: 474 IHKYKGLPKSGSQMSASFTKNGKHIVSVGEDSRVYMWNYDSLFLPSSKEAKSQQSCEHFF 533

Query: 493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCR 552
           S+GVSVA+ W G+GTE     ++     ++K +    A W R+++RFSL +WFS DG  R
Sbjct: 534 SDGVSVAIPWSGVGTEPNCFSNNQALFSNRK-NYQRAASWTRETDRFSLSNWFSADGLFR 592

Query: 553 GSATWPAEKLPLWDVTI--DSDGYCQDPQQQRLQQQCLNNVDDVRAISA---TWGLVIVT 607
           GSATWP E+LPLWD+ I  D +G     Q     Q+ LN+  D     +   TWGLV+V 
Sbjct: 593 GSATWPEERLPLWDLPITEDENGSL---QHHDCHQKKLNSHRDAHNDGSQLETWGLVMVV 649

Query: 608 AGCDGMIKTFHNYGLPIRL 626
           AG DG IKTFHNYGLPI+L
Sbjct: 650 AGLDGTIKTFHNYGLPIKL 668

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511161|ref|XP_003524298.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max]

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 339/686 (49%), Positives = 442/686 (64%), Gaps = 71/686 (10%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYD-IWMSEPRSVKERR------- 52
           MLSSD+G  DVFFDS D LS ++SV+A+EE G G+  YD IW+ EP SVKERR       
Sbjct: 1   MLSSDDGDMDVFFDSVDSLSTQDSVLAKEEFGSGRCGYDEIWVKEPVSVKERRERFLQGL 60

Query: 53  -----SSMNRADENLNCFDREMD------------------------------------- 70
                SS   + E +N  D  +                                      
Sbjct: 61  GLADSSSKVCSQEKMNLDDSSISLGLERIRECSGAISNACILHTDQVVSEKLILSGGKAA 120

Query: 71  SEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKF-------ENPFPECKGVNIKKVKK 123
           S+    +DE +    +E    ++G+ + FS + ++        +  F +   ++ +K K 
Sbjct: 121 SKEKISLDEFKGCPQDEAEANIQGKEHEFSSTAEEHRPREAVSQEEFQDFD-MSKRKRKN 179

Query: 124 LWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGC 183
            WKR ++++K       S   K N+   K  +++V+QNKK+ +EF+ LY  QE++AHKG 
Sbjct: 180 WWKRFVNIRKSGEGNVRS---KLNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGL 236

Query: 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 243
           +WT+KFSP G+YLASGGEDGVVRIW VTS+  S   FT +     +  E      +KK S
Sbjct: 237 VWTMKFSPCGQYLASGGEDGVVRIWCVTSLDKSSICFTPEDSTSKSKVECDNSSPRKKHS 296

Query: 244 HVPVV-IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL 302
             P + +P+ VFQIEESPLQE  GH  DVLDLAWSNS+ LLS SMDKTVR+WQ+GCNQCL
Sbjct: 297 SQPFIFLPNSVFQIEESPLQEFFGHSNDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCL 356

Query: 303 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDG 362
           NVF H++YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RV+DWAD+RD ISAI Y  DG
Sbjct: 357 NVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWADIRDAISAISYQQDG 416

Query: 363 KGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421
           KGF+VGS+TGTC FY ASG   +LE ++D H +KK SGNKITGIQFS+  SQRIMITSED
Sbjct: 417 KGFVVGSVTGTCCFYVASGTYFQLEAQIDVHGKKKASGNKITGIQFSQKNSQRIMITSED 476

Query: 422 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 481
           SK+ + DG++++ K++GLPKSG QMS+SFT++GKHIIS+G+D  VY+WN+D++   SSKQ
Sbjct: 477 SKICVFDGIELVQKYRGLPKSGCQMSSSFTSSGKHIISVGEDSHVYIWNFDDMGNASSKQ 536

Query: 482 KNSVRSCEHFFSEGVSVAVQWPGIGTEQK-SLCSSSLRDCSQKWDNLETAPWIRDSERFS 540
             S RSCE+FFS+GV+VA+   G+  +++ S  + S          LE A   RD +RFS
Sbjct: 537 TKSERSCEYFFSKGVTVAIPRSGMKADKRDSSGNYSHHSSEMPTQQLEVASEARDHKRFS 596

Query: 541 LGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISAT 600
           LG+WF+ DG CRGS TWP EKLP WD+ I  D Y         QQ C  +    R +S T
Sbjct: 597 LGNWFAIDGTCRGSMTWPEEKLPSWDLPITEDEYGH-------QQLCYKDNCHGRNVSET 649

Query: 601 WGLVIVTAGCDGMIKTFHNYGLPIRL 626
           WGL IV AGCDG IKTFHN+GLP+RL
Sbjct: 650 WGLSIVAAGCDGTIKTFHNFGLPVRL 675

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528542|ref|XP_003532860.1| PREDICTED: uncharacterized protein LOC100806747 [Glycine max]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 300/551 (54%), Positives = 387/551 (70%), Gaps = 28/551 (5%)

Query: 85  MNECVVTLEGESNGFSQSVDKFE----NPFPECKGVNI--KKVKKLWKRIISMKKRNVET 138
           M E     +G+ + FS + ++      +   E +  N+  +K K  WKR ++++K     
Sbjct: 86  MYEADANFQGKVHEFSSTAEEHRPREADSQEEFQDFNMSKRKRKNWWKRFVNIRKGG--- 142

Query: 139 CMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLAS 198
                 + N+   K  +++V+QNKK+ +EF+ LY  QE++AHKG IW +KFSP G+YLAS
Sbjct: 143 ------EGNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGLIWKMKFSPCGQYLAS 196

Query: 199 GGEDGVVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257
           GGEDGVV IW VTS+  +S  S T+D    S  +        K SS   + +P+ +FQIE
Sbjct: 197 GGEDGVVCIWRVTSLDKSSICSTTEDSTSNSKVECDNSSPRNKHSSQPFIFLPNSIFQIE 256

Query: 258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 317
           ESPLQE  GH  DVLDLAWSNS+ LLS SMDKTVR+WQ+GCNQCLNVF H++YVTC+QFN
Sbjct: 257 ESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLNVFHHNDYVTCIQFN 316

Query: 318 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY 377
           P+D+NYFISGSIDGKVRIWG+ E+RV+DWAD+RDVISAI Y  DGKGF+VGS+TGTC FY
Sbjct: 317 PVDENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSVTGTCCFY 376

Query: 378 KASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 436
            ASG   +LE ++D H +KK SGNKITGIQFS+  SQRIMITSEDSK+ I DG +++ K+
Sbjct: 377 VASGTYFQLEAQIDVHGKKKVSGNKITGIQFSQKNSQRIMITSEDSKICIFDGTELVQKY 436

Query: 437 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV 496
           KGLPKSGSQMS SFT++GK+IIS+G+D  VY+WN+D++   SSKQ  S RSCE+FFS+GV
Sbjct: 437 KGLPKSGSQMSGSFTSSGKNIISVGEDSHVYIWNFDDMGNASSKQTKSERSCEYFFSKGV 496

Query: 497 SVAVQWPGIGTEQK-SLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSA 555
           +VA+ W G+  +Q+ S  + S R        LE AP  RD E FSLG+WF+ DG CRGS 
Sbjct: 497 TVAIPWSGMKADQRDSSGNYSHRSSEMPTQQLEVAPETRDHELFSLGNWFTTDGSCRGSM 556

Query: 556 TWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIK 615
           TWP EKLP WD+ I      ++ QQ   +  C +     R++S TWGL IV AGCDG IK
Sbjct: 557 TWPEEKLPSWDLPI-----AEEDQQLSHKDNCHD-----RSVSETWGLSIVAAGCDGTIK 606

Query: 616 TFHNYGLPIRL 626
           TFHN+GLP+RL
Sbjct: 607 TFHNFGLPVRL 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518745|ref|XP_003528038.1| PREDICTED: uncharacterized protein LOC100801576 [Glycine max]

 Score =  583 bits (1502), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 335/681 (49%), Positives = 424/681 (62%), Gaps = 71/681 (10%)

Query: 1   MLSSDEGVDDVFFDSTDCLS-FEESVVAEEELGPGKLDYDIWMSEPRSVKERRS------ 53
           ML SDEG  DVFFDS DC S   +SV+ E+E G     Y+IW++EP SV ERR       
Sbjct: 1   MLISDEGDSDVFFDSVDCFSPTRDSVLTEQEFG-----YEIWVNEPVSVMERREKFLQEM 55

Query: 54  -----------------SMNRADENLNCFDREMDS----EANCMVDELEQDQMNECVVT- 91
                            S + + E L   +R  DS     A+C     + DQ++E V++ 
Sbjct: 56  GLGDGSSKVCSQENNVMSSDDSSERLG-LERIRDSGAVSNASCSCILPDDDQVSELVLSG 114

Query: 92  ---------LEGESNGFSQSVDKFENPFPEC----------------KGVNIKKVKKLWK 126
                    L  E  G  +    FE    E                 K +  K+ K  WK
Sbjct: 115 SEATSEAQGLFDEHKGCPKDESCFEGKVYEVSCTDQEVRHRKAEVREKYMGEKEKKNWWK 174

Query: 127 RIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWT 186
             IS KK       S   K NS   K  ++ V+QNKK+ ME +ALY  QEI+AHKG IWT
Sbjct: 175 HFISSKKGGGGKVRS---KLNSSTNKTRRINVRQNKKRWMELSALYIGQEIRAHKGLIWT 231

Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 246
           +KFSP+G+YLASGGEDGV+RIW V ++  S   F  +    +  K       KK SS   
Sbjct: 232 MKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICFNAEDSAANKVKHDFSSSQKKHSSQSF 291

Query: 247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 306
           VV+P ++F+IEESPL E  GH  DVLDLAWSNS+ LLS S DKTVR+W++GC+QCL+VF 
Sbjct: 292 VVLPSKIFKIEESPLHEFSGHASDVLDLAWSNSDTLLSSSSDKTVRLWKIGCSQCLSVFH 351

Query: 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 366
           H +YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RVVDWAD+RDVISAI Y PDGKGF+
Sbjct: 352 HKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDGKGFV 411

Query: 367 VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 425
           VGS+ GTC FY ASG   +LE K+  + +K TSGNKITGIQFS+   QR+MITSEDS++R
Sbjct: 412 VGSLPGTCRFYVASGKHFQLETKIHVNGKKSTSGNKITGIQFSQKNHQRVMITSEDSRVR 471

Query: 426 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 485
           IL+G + +  +KGLP+SGSQMS SFT+ G+HI+S+G D RVY+WN+++L   SSKQ  S 
Sbjct: 472 ILEGTEFVQTYKGLPRSGSQMSGSFTSGGEHIVSVGGDSRVYIWNFNDLGNASSKQTKSK 531

Query: 486 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWF 545
            SCEHF SEGV+VA+ W  +  E++S  S+     S     LE +  +R+SERFS GSWF
Sbjct: 532 YSCEHFGSEGVTVALPWSCMSAEEQSGSSNDFAHHSSSQHQLEASHGVRESERFSFGSWF 591

Query: 546 SNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVI 605
           S DG CRGS TWP E LP WD+ +    +         Q+ C  +    + +S TWGL I
Sbjct: 592 SIDGSCRGSVTWPEETLPRWDLPLVEVEFDH-------QKLCTKDPSHEKHVSETWGLSI 644

Query: 606 VTAGCDGMIKTFHNYGLPIRL 626
           V AGCDG IKTFHN+GLPIRL
Sbjct: 645 VAAGCDGTIKTFHNFGLPIRL 665

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507482|ref|XP_003522494.1| PREDICTED: uncharacterized protein LOC100780979 [Glycine max]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 329/684 (48%), Positives = 431/684 (63%), Gaps = 74/684 (10%)

Query: 1   MLSSDEGVDDVFFDSTDCLS-FEESVVAEEELGPGKLDYDIWMSEPRSVKERR------- 52
           ML SDEG  D+FFDS DC S   ES++ ++E G     Y+IW++EP SV ERR       
Sbjct: 1   MLISDEGDSDLFFDSVDCFSPTRESLLTKQEFG-----YEIWVNEPVSVMERREKFLQGL 55

Query: 53  -------SSMNRADENLNCFD-----------REMDSEANCMVDELEQDQMNECVVT--- 91
                  S +   + N+   D           R+  + +N     L  DQ++E V++   
Sbjct: 56  GLGDGSSSKVCSQENNMMSSDDSSVRLGLERIRDSGAASNACSCILPDDQVSELVLSGSE 115

Query: 92  ---------------------LEGESNGFS---QSVDKFENPFPE-CKGVNI--KKVKKL 124
                                 EG+    S   Q V   +   PE C G ++  K+ K  
Sbjct: 116 ATSEAQALFDEHKGCPKDESCFEGKVYEVSCTDQEVRHRKVEVPEKCLGFDMGEKEKKNW 175

Query: 125 WKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCI 184
           WK  IS KK       S   K NS   K  ++ V+QNKK+ MEF+ALY  QEI+AH+G I
Sbjct: 176 WKHFISSKKGGGGKFRS---KLNSTTNKTRRINVRQNKKRWMEFSALYIGQEIRAHEGLI 232

Query: 185 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG-KIKFGKKKSS 243
           WT+KFSP+G+YLASGGEDGV+RIW V ++  S      +    S  K        K  S 
Sbjct: 233 WTMKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICLNAEDSAASKVKHDFSSSQKKHSSQ 292

Query: 244 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN 303
              +V+P+++F+IEESPL E +GH  DVLDLAWS+S+ LLS S DKTVR+W++GC+QCL+
Sbjct: 293 SSFIVLPNKIFKIEESPLHEFYGHASDVLDLAWSSSDTLLSSSSDKTVRLWKIGCSQCLS 352

Query: 304 VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 363
           VF H +YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RVVDWAD+RDVISAI Y PD K
Sbjct: 353 VFYHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDAK 412

Query: 364 GFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 422
           GF+VGS+TGTC FY ASG   +LE K+  + +K+TSGNKITGIQFS+   QR+MITS+DS
Sbjct: 413 GFVVGSLTGTCRFYVASGKYFQLETKIRVNGKKRTSGNKITGIQFSQKNHQRVMITSDDS 472

Query: 423 KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK 482
           K+RIL+G++++  +KGL +SGSQMS SFT+ G+HIIS+G D RVY+WN+++    SSKQ 
Sbjct: 473 KVRILEGIELVQTYKGLSRSGSQMSGSFTSGGEHIISVGGDSRVYIWNFNDSGNASSKQT 532

Query: 483 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLG 542
            S  SCEHF SEGV++A+ W G+  E++S  S+     S +   LE +  +R+SERFS G
Sbjct: 533 KSNYSCEHFGSEGVTIAIPWSGMSAEERSGSSNDFTHYSSQ-HQLEASHGVRESERFSFG 591

Query: 543 SWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWG 602
           SWFS DG CRGS TWP EKLP WD+ +    +         Q+ C  +    + +S TWG
Sbjct: 592 SWFSIDGSCRGSVTWPEEKLPSWDLPLVEVEFDH-------QKLCTKDPSHEKHVSETWG 644

Query: 603 LVIVTAGCDGMIKTFHNYGLPIRL 626
           L IV AGCDG IKTFHN+GLPIRL
Sbjct: 645 LSIVAAGCDGTIKTFHNFGLPIRL 668

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093348|ref|XP_002309892.1| predicted protein [Populus trichocarpa] gi|222852795|gb|EEE90342.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 303/554 (54%), Positives = 367/554 (66%), Gaps = 96/554 (17%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRSSMNRA-- 58
           MLSSDEG  D+FFDS D L          ELG  KL+YDIW++EP+SVKERR    R   
Sbjct: 1   MLSSDEGESDLFFDSVDYL----------ELGCDKLEYDIWLNEPQSVKERRQGFLRGMG 50

Query: 59  --------DENL-----------------NCFD------------REMDSEANCMVDELE 81
                   DENL                 +C +            RE +SEANCMVDE+ 
Sbjct: 51  LGGFASNIDENLGLERITECSEAVSSSLVSCTNVEEVNLVSYSAGREENSEANCMVDEIL 110

Query: 82  QDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMS 141
              M++     E E+ G S               V++++                     
Sbjct: 111 PFSMDKPGAASENENIGPS---------------VHLRQ--------------------- 134

Query: 142 EKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGE 201
                    PK N+ +VKQNKK  MEF+ +Y  QEIQAHKG IWT+KFSPDG+YLA+GGE
Sbjct: 135 -------GSPKTNRTKVKQNKKGFMEFSGVYMGQEIQAHKGFIWTMKFSPDGQYLATGGE 187

Query: 202 DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261
           D ++RIW VTSV +SCKSF+ +G   SN KEGK     KK  H  VVIP++VFQIEE+PL
Sbjct: 188 DRIIRIWRVTSVDSSCKSFSSEGHSDSNLKEGKSSLRTKKRMHSSVVIPEKVFQIEETPL 247

Query: 262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD 321
           QE HGH  ++LDLAWS+SN+LLS SMDKTVR+W VGCN CL +F H +YVTC+QFNP+D+
Sbjct: 248 QEFHGHTSEILDLAWSDSNHLLSSSMDKTVRLWLVGCNYCLGIFHHSSYVTCIQFNPVDE 307

Query: 322 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 381
           NYFISGSIDGKVR+WGV EKRVV WADVRDVISAICY PDG+GF+VG+I G+C FY+ SG
Sbjct: 308 NYFISGSIDGKVRVWGVSEKRVVHWADVRDVISAICYQPDGRGFVVGTIIGSCRFYEVSG 367

Query: 382 NDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLP 440
            DL+LE ++    R + SGN+ITGIQ   +   R+MITSEDSK+R+ DGVDV++KFKGLP
Sbjct: 368 TDLQLEAEIHIQGRNRNSGNRITGIQ---EICPRVMITSEDSKVRVFDGVDVVNKFKGLP 424

Query: 441 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV 500
           KSGSQMSASFT+ G+HIIS+G+DCRVYVWNYD LC P SK   SVRSCE+FFSEGVSVAV
Sbjct: 425 KSGSQMSASFTSKGRHIISVGEDCRVYVWNYDGLCTPWSKHTKSVRSCEYFFSEGVSVAV 484

Query: 501 QWPGIGTEQKSLCS 514
            W G GTE + L S
Sbjct: 485 PWSGPGTELRGLSS 498

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
TAIR|locus:2028539	593	AT1G48870 [Arabidopsis thalian	0.757	0.799	0.440	1.5e-108
TAIR|locus:2169769	698	AT5G24320 "AT5G24320" [Arabido	0.557	0.5	0.450	3.1e-104
TAIR|locus:2181733	905	AT5G02430 "AT5G02430" [Arabido	0.405	0.280	0.455	1e-98
TAIR|locus:2153443	825	AT5G54200 "AT5G54200" [Arabido	0.589	0.447	0.412	1.5e-98
TAIR|locus:2165700	709	AT5G42010 "AT5G42010" [Arabido	0.571	0.504	0.438	1e-95
TAIR|locus:2040731	903	AT2G37670 "AT2G37670" [Arabido	0.615	0.426	0.391	4.4e-94
TAIR|locus:2090146	883	AT3G15470 "AT3G15470" [Arabido	0.600	0.425	0.404	2.1e-93
TAIR|locus:2168606	654	AT5G53500 "AT5G53500" [Arabido	0.421	0.403	0.520	1.3e-90
TAIR|locus:2019494	647	AT1G64610 "AT1G64610" [Arabido	0.405	0.392	0.505	2.7e-88
WB|WBGene00006369	1043	sym-4 [Caenorhabditis elegans	0.522	0.313	0.333	1.9e-47

TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)]

 Score = 990 (353.6 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
 Identities = 229/520 (44%), Positives = 304/520 (58%)

Query:     4 SDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERR----SSMNRAD 59
             S+  VDD+FFDS+D LS  E VV EEE    + ++ +W  EP SV+ERR      M   +
Sbjct:     7 SEVVVDDLFFDSSDVLSIGEQVVVEEE-EVEEAEFQVWSGEPISVEERRVRFLKKMGLLE 65

Query:    60 ENLNCFDREM----DSEANCMVDELEQDQMNECVVTLE--GESNGFS-QSVDKFENPFPE 112
             E   C +R +    D   +   D    D   +C V  E  G +   S + ++  ++   +
Sbjct:    66 ER--CLERMVSDYSDEVTSSSSDSSLCDSGLQCCVREENYGSTTSISDEELEGVDDDDDD 123

Query:   113 CKGVNIKKVKKLWKRIISMK--KRNVETCMSEKRKPNSEKPKAN-----KMEVKQNKKKC 165
              + ++         R  S K  K+ +  C S   K    K K++     K++VK NKK  
Sbjct:   124 SEEIS-SNASTSPSRSSSKKSAKKWLFNCFSAGVKDKDFKYKSSEETMSKVKVKTNKKSH 182

Query:   166 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT-DDG 224
             +E +A Y  Q+I  HKG IWTLKFSPDG+YLA+GGEDGVV+IW +T   +   SF     
Sbjct:   183 VELSAAYMVQKINGHKGKIWTLKFSPDGKYLATGGEDGVVKIWRITLSDSLLASFLRQQE 242

Query:   225 GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLS 284
                  A                V+ P + F IEE+P QEL+GH GDVLDLAWS+SN LLS
Sbjct:   243 PINQQAAL--------------VLFPQKAFHIEETPFQELYGHTGDVLDLAWSDSNLLLS 288

Query:   285 CSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
              S DKTVR+W+ GC+QCL+VF H+NYVTCV+FNP++ N F SGSIDGK RIWG+ E+RVV
Sbjct:   289 ASKDKTVRLWRTGCDQCLHVFHHNNYVTCVEFNPVNKNNFASGSIDGKARIWGLSEERVV 348

Query:   345 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGNKIT 403
              W DVRD ISAI Y P+G GF+VG ITG C FY+   ND+ + E++    R     N+IT
Sbjct:   349 AWTDVRDSISAISYQPNGNGFVVGCITGNCRFYQILDNDVIMDEQILIRGR-----NRIT 403

Query:   404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF-TTTGKHIISIGD 462
              ++F    S++I+++SEDSK+RI D   +IHKFK     G Q SASF ++TGKHI+S+  
Sbjct:   404 AVEFCPGSSEKILVSSEDSKVRIFDKTQMIHKFKAPSNFGRQSSASFVSSTGKHILSVRR 463

Query:   463 DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW 502
                VY+WN D   FPS K   S RS E+F S GVS    W
Sbjct:   464 GVGVYLWNND--AFPSRKGAKSSRSFEYFHSPGVSAVAAW 501

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 3.1e-104, Sum P(3) = 3.1e-104
 Identities = 176/391 (45%), Positives = 238/391 (60%)

Query:   247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 306
             V+IP ++F++ + PL E  GH GD+LD++WS +N LLS S+D +VR+WQ+GC  CL +F 
Sbjct:   335 VIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFS 394

Query:   307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 366
             H+NYVT VQFNP+DD++FISGSIDGKVRIW   + +VVDWAD R +++A+CY PDG+  I
Sbjct:   395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQCQVVDWADARGIVTAVCYQPDGQAVI 454

Query:   367 VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF-----SRDESQRIMITSE 420
             +G++T  C FY  SG+ L+L+  +  H++KK+S  +I G QF     S D S R+M+ S 
Sbjct:   455 IGTLTSDCRFYNVSGHCLQLDGHICLHNKKKSSNKRIIGFQFLLQFDSTDPS-RVMVASA 513

Query:   421 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN---YD-ELCF 476
             DS++RI+ G +V+HK+KG   +G+Q+SASFT  GKHI+S  DD  VYVWN   +D E   
Sbjct:   514 DSQVRIISGRNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGHDPEQSS 573

Query:   477 P---SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWI 533
             P   S  ++  +RS E F S  VSVA+ W G       L   S           E +P +
Sbjct:   574 PGFFSHTKRLKIRSFEKF-SADVSVAIPWCGF---TPVLSGGS-----------ELSPSL 618

Query:   534 RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCXXXXXXXXXXXCLNNVDD 593
                  FSLG  +  D P +GSATWP EKL      + +               C    + 
Sbjct:   619 -----FSLGREYVLDSP-KGSATWPEEKLASSFSPVKA---IRRSHYKFLRSSCRRTSES 669

Query:   594 VRAISATWGLVIVTAGCDGMIKTFHNYGLPI 624
                 S  WGLVIVT G DG IK FHNYGLP+
Sbjct:   670 ----SHLWGLVIVTGGWDGRIKLFHNYGLPV 696

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.0e-98, Sum P(5) = 1.0e-98
 Identities = 119/261 (45%), Positives = 169/261 (64%)

Query:   250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN 309
             P+ VF + + P+    GH  DVLDL+WS S  LLS SMDKTVR+W +    CL +F H++
Sbjct:   501 PETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHND 560

Query:   310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 369
             YVTCVQFNP+D++YFISGS+D K+RIW +  ++VV+W D++++++A+CY PDG+   VGS
Sbjct:   561 YVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDGQAAFVGS 620

Query:   370 ITGTCHFYKASGNDLKLEK---VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426
             I G C  Y A   D KLE+   +D  ++KK    KIT  QFS      +++TS DS++R+
Sbjct:   621 INGHCRLYSAE--DCKLEQTNQIDLQNKKKAQAKKITAFQFSPINPSEVLVTSADSRIRV 678

Query:   427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE--LCFPSSKQKNS 484
             LDG +++ KF+G     SQM+AS+T   KHI+   +D +VYVW ++E  L     K    
Sbjct:   679 LDGTELVQKFRGFKNMNSQMTASYTVDAKHIVCASEDSQVYVWKHEEPRLGITGRKTVTM 738

Query:   485 VRSCEHFFSEGVSVAVQWPGI 505
               S E F  + VSVAV W G+
Sbjct:   739 CTSYETFPCKDVSVAVPWNGV 759

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 1.5e-98, Sum P(3) = 1.5e-98
 Identities = 161/390 (41%), Positives = 227/390 (58%)

Query:   247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 306
             V++P+ VF + E P+    GH  DVLDL+WS S +LLS SMDKTVR+W +    CL VF 
Sbjct:   447 VLVPEAVFGLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFS 506

Query:   307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 366
             H +YVTC+QFNP+DDNYFISGS+D KVRIW + + +VVDW D+ ++++A CY PDG+G +
Sbjct:   507 HSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGAL 566

Query:   367 VGSITGTCHFYKASGNDLKLEK-VDFHDRKK-TSGNKITGIQFSRDESQRIMITSEDSKL 424
             VGS  GTC  Y    N L+  + ++  +RKK T   KITG QF    S  +++TS DS+ 
Sbjct:   567 VGSYKGTCCLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQFVAGSSSEVLVTSADSRT 626

Query:   425 RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD-ELCFPSSKQKN 483
             R++DGVD++HKFKG   + SQ+SAS T+ GK ++S  +D  VYVWNYD +     SK+  
Sbjct:   627 RVVDGVDLVHKFKGFRNTNSQISASLTSNGKFLVSASEDSNVYVWNYDSDSRAGRSKRVT 686

Query:   484 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRD---SERFS 540
                S E+F+   VSVA  WPG  +   +  ++S    S   +N    P + D   ++  +
Sbjct:   687 VTNSYENFYCRDVSVAAPWPGKISNNHT--NNSPEQSSFTANNNPPTP-VNDPTNNKTVT 743

Query:   541 LGSWFSNDGPC---RGSATWPAEKLPLWDVTIDSDGYCXXXXXXXXXXXCLNNVD-DVRA 596
              G   S        R SATWP EKL L                       ++N+  + + 
Sbjct:   744 NGIISSATNRYFFDRVSATWPEEKLLL--------AAKNRARTSPRVSVDMSNIQVNTKP 795

Query:   597 ISATWGLVIVTAGCDGMIKTFHNYGLPIRL 626
              ++ W +VIVT    G I+ F N+G P+RL
Sbjct:   796 SASAWSMVIVTGSLRGEIRIFQNFGFPVRL 825

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.0e-95, Sum P(3) = 1.0e-95
 Identities = 170/388 (43%), Positives = 238/388 (61%)

Query:   248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-QCLNVFD 306
             V+P +VF I E+P  E  GH G++LDL+WS   +LLS S+D+TVR+W+VG + +C+ VF 
Sbjct:   343 VLPSKVFSISETPQHEFRGHTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDECIRVFS 402

Query:   307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 366
             H ++VTCV FNP+DDNYFISGSIDGKVRIW V + RVVD+ D+R +++A+CY PDGKG +
Sbjct:   403 HKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVSQFRVVDYTDIRQIVTALCYRPDGKGAV 462

Query:   367 VGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 425
             VGS+TG C FY  + N L+L++ +  H +KK    +ITG QF   +S ++M+TS DS++R
Sbjct:   463 VGSMTGECRFYHTTDNQLQLDRDISLHGKKKVPNKRITGFQFFPGDSDKVMVTSADSQIR 522

Query:   426 ILDGVDVIHKFKGLPKSGSQ-MS---ASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 481
             I+ GVD I K K      +  MS   ASFT+ GKHI+S  ++  ++VW++ +    +S Q
Sbjct:   523 IICGVDTICKLKKASSLRTTLMSPTFASFTSDGKHIVSTIEESGIHVWDFSQPNKKASSQ 582

Query:   482 K-NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFS 540
             K  ++RS E F S  VSVA+ W G G E      S + D  + + +    P   D     
Sbjct:   583 KPKTIRSYEGFLSRNVSVAIPWLGQGKED-----SIIADLEKSFAHF---PVPLD----- 629

Query:   541 LGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCXXXXXXXXXXXCLNNV-DDVRAISA 599
                +FS   P +G+ TWP EKL +  V   +                L +V  +V   + 
Sbjct:   630 ---YFS---PMKGATTWPEEKLGV--VAGTAAAAVSATVSSRSKLRLLKSVCQNVHGSTP 681

Query:   600 -TWGLVIVTAGCDGMIKTFHNYGLPIRL 626
               WGLVIVTA  DG I+ FHNYGLPIR+
Sbjct:   682 HLWGLVIVTATWDGSIRVFHNYGLPIRV 709

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 4.4e-94, Sum P(4) = 4.4e-94
 Identities = 159/406 (39%), Positives = 234/406 (57%)

Query:   117 NIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK-MEVKQNKKKCMEFTALYTSQ 175
             NIK V       ++ K  +  +  S K+  + +  KAN+ ++V+   K   E +AL+  Q
Sbjct:   339 NIKGVAHSMSLRVADKDVSDGSTDSPKKGKDHKHGKANEWVKVRPTGKSYKELSALHMCQ 398

Query:   176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT----------SVAASCKSFTDDGG 225
             EIQAH+G +WT+KFS D  YLASGG D V+ +W V           S+     S  D  G
Sbjct:   399 EIQAHEGAVWTIKFSQDAHYLASGGADRVIHVWEVQECELMSMNEGSLTPIHPSLCDSSG 458

Query:   226 FGSNAXXXXXXXXXXXS---SHVP--VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN 280
                                 +H+P  V +P+ VF   + P+  L GH   +LDL+WS S 
Sbjct:   459 NEITVVEKKKKGKGSSGRRHNHIPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQ 518

Query:   281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340
              LLS SMDKTVR+W +    CL +F H++YVTC+QF+P+D+NYF+SGS+D K+RIW + +
Sbjct:   519 LLLSSSMDKTVRLWDIETKTCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQD 578

Query:   341 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-KLEKVDFHDRKKTSG 399
             + VV+W+D+ ++++A CY PDG+G ++GS  G C  Y      L +  ++D    KK+  
Sbjct:   579 RHVVEWSDLHEMVTAACYTPDGQGALIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQA 638

Query:   400 N-KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII 458
               KIT  QFS      +++TS DS++RILDG +VIHKFKG   + SQ+SAS++  GK+II
Sbjct:   639 KRKITSFQFSPVNPSEVLVTSADSRIRILDGSEVIHKFKGFRNTCSQLSASYSQDGKYII 698

Query:   459 SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 504
                +D +VY+W  D   F  ++   + +S EHF  + VS AV W G
Sbjct:   699 CASEDSQVYLWKND---FHRTRSTLTTQSHEHFHCKDVSAAVPWHG 741

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 2.1e-93, Sum P(3) = 2.1e-93
 Identities = 161/398 (40%), Positives = 234/398 (58%)

Query:   155 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA 214
             ++ V+Q  K   E TALY +QEIQAH G IW++KFS DG+YLAS GED ++ IW V    
Sbjct:   387 RVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEAE 446

Query:   215 ASCKSFTD---------DGGFGSNAXXXXXXXXXXXS----SHVPVVIPDEVFQIEESPL 261
                +   D         +G                 S    S   + +PD +F + E P 
Sbjct:   447 KKGELLLDRPELLLLATNGSPEPTTMSPRRRGRTSISRKSLSLENIFVPDSLFGLSEKPF 506

Query:   262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD 321
                 GH  DVLDLAWS S +LLS SMDKTVR+W +    CL VF H +YVTC+QFNP+DD
Sbjct:   507 CSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFNPVDD 566

Query:   322 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 381
              YFISGS+D KVR+W + +++VVDW D+ +++++ CY PDG+G +VGS  G+C  Y AS 
Sbjct:   567 RYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCRMYSASD 626

Query:   382 NDLKLE-KVDFHDRKKTSGNK-ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL 439
             N L+ + +++  ++KK +  K ITG QF    S  +++TS DS++R++DG D+++K KG 
Sbjct:   627 NKLQQKSQINLQNKKKKAHQKKITGFQFVPGSSSEVLVTSSDSRIRVVDGTDLVNKLKGF 686

Query:   440 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS-----VRSCEHFFSE 494
               + SQ+SAS T  GK+++S  +D  VY+W Y+      S+  N+       S EHF S+
Sbjct:   687 RNTSSQISASITADGKYVVSASEDSHVYIWKYESPASRPSRSNNNKNVTVTNSYEHFHSQ 746

Query:   495 GVSVAVQWPGIGTEQK--SLCSSSLRDCSQKWDNLETA 530
              VS A+ WPG+ + +   +   +     +   DN+ TA
Sbjct:   747 DVSAAISWPGMASTENWGTQNRAGFNGSTNNLDNISTA 784

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
 Identities = 141/271 (52%), Positives = 190/271 (70%)

Query:   247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 306
             VV P +VF+I E PL E  GH G+VLD++WS  NYLLS SMDKTVR+W+VG N CL VF 
Sbjct:   307 VVFPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFA 366

Query:   307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 366
             H++YVT VQFNP+++NYF+SGSIDGKVRIW +    VVDWAD++D+ISA+CY PDG+G I
Sbjct:   367 HNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGI 426

Query:   367 VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 425
             +GS+ G+C F+  SG  L+L+ ++  H++KK+S  +ITG QF   E  ++++ S DSK+R
Sbjct:   427 IGSLNGSCRFFNMSGEFLELDSQIHLHNKKKSSNKRITGFQFLPQEPTKVLVVSADSKVR 486

Query:   426 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 485
             IL G +V+ K+KG+ K+ S  SAS T+ GKHI+S  +D  VY+W+ DE     S+ K  +
Sbjct:   487 ILQGNNVVRKYKGVCKTRSLTSASLTSDGKHIVSACEDSNVYIWSNDE----ESETKK-I 541

Query:   486 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS 516
             RS E F S   SVA  W G      +L  SS
Sbjct:   542 RSFERF-SANASVAATWCGFSDHNTTLPFSS 571

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
 Identities = 132/261 (50%), Positives = 182/261 (69%)

Query:   247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 306
             VV+P  +F I E PL E  GH G++LDL+WS   YLLS S+D+TVR+W+VGC++CL  F 
Sbjct:   301 VVLPPTIFSISEKPLHEFKGHIGEILDLSWSEKGYLLSSSVDETVRLWRVGCDECLRTFT 360

Query:   307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 366
             H+N+VTCV FNP+DDNYFISGSIDGKVRIW V   RVVD+ D+RD+++A+CY PD KG +
Sbjct:   361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVTRCRVVDYTDIRDIVTAVCYRPDAKGAV 420

Query:   367 VGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNKITGIQF--SRDESQRIMITSEDSK 423
             +GS+TG C FY    N L++++ ++ H +KK +  +I+G+Q+  S  +S ++M+TS DS+
Sbjct:   421 IGSMTGNCRFYHIFENQLQMDQEINVHGKKKVASKRISGLQYLPSDSDSDKVMVTSADSQ 480

Query:   424 LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF--PSSKQ 481
             +RI+ G DVI K K    S    SASF + GKHIIS  +D  + VW+Y +L    P S+ 
Sbjct:   481 IRIICGEDVICKLKA--SSLRTTSASFISDGKHIISTSEDSYINVWSYSQLPSKKPYSET 538

Query:   482 KNSVRSCEHFFSEGVSVAVQW 502
               S+RS E F S   SVA+ W
Sbjct:   539 PKSIRSYEGFLSHNASVAIPW 559

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

WB|WBGene00006369 sym-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 496 (179.7 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
 Identities = 118/354 (33%), Positives = 184/354 (51%)

Query:   153 ANKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 211
             +N +  +++KK   +F  L   QE+   H G IW +KFS  G+ +A+ G+D ++R+W V 
Sbjct:   588 SNIVRPRKSKKGPYDFEHLTVEQELNNEHTGAIWCIKFSICGKLMATAGQDSILRVWVVR 647

Query:   212 S-----------VAASCKSFTDDGGFGSNAXXXX--XXXXXXXSSHVPVVIPDEVFQIEE 258
             S            AA+     D      N              +S       D       
Sbjct:   648 SHLQYFSDMREKYAANANPEADPMNSVDNMEHFRPPSSMESVVNSEATTASDDNNGLFCA 707

Query:   259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP 318
              P   L GH  D+LD++WS + ++LS  MD+TV++W +  N+CL  F H ++VTCV F P
Sbjct:   708 KPFALLKGHTADILDVSWSKNYFILSSGMDRTVKLWHLSRNECLCCFQHIDFVTCVAFLP 767

Query:   319 IDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RDVISAICYIPDGKGFIVGSITGTCHFY 377
              DD YF+SGS+DGK+R+W + +K+V  W D  +  I+A+ ++  GK  +VG+  G C FY
Sbjct:   768 KDDRYFLSGSLDGKLRMWHIPDKKVAVWNDTEKKYITAMTFVKSGKFAVVGTYDGKCIFY 827

Query:   378 KASGNDLKLEK-VDFHDR--KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--V 432
               + + LK    VD      K   G+K+TG+    D   ++++TS DS++R+ D  D  +
Sbjct:   828 --TSDQLKYHTAVDVRSTRGKNARGHKVTGLTSHGD---KLLVTSNDSRIRMYDIRDKAL 882

Query:   433 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--KQKNS 484
               KFKG+    SQ+ A+F+  G+HII   +D  VY+W   +     S  K +NS
Sbjct:   883 TCKFKGVQNDHSQIRAAFSPDGRHIICGSEDKFVYIWRASDTTVALSVRKDRNS 936

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	626
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
smart00320	40	smart00320, WD40, WD40 repeats	3e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  119 bits (301), Expect = 5e-30
 Identities = 69/299 (23%), Positives = 118/299 (39%), Gaps = 63/299 (21%)

Query: 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF 237
           + H G +  +  S DG YLASG  D  +R+W                          ++ 
Sbjct: 48  KGHTGPVRDVAASADGTYLASGSSDKTIRLW-------------------------DLET 82

Query: 238 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV 296
           G+                     ++ L GH   V  +A+S     L S S DKT+++W V
Sbjct: 83  GEC--------------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122

Query: 297 GCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIW-GVCEKRVVDWADVRDVIS 354
              +CL     H  +V  V F+P D  +  S S DG +++W     K V         ++
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 355 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414
           ++ + PDG+  +  S  GT   +  S     L  +  H+      N +  + FS D    
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHE------NGVNSVAFSPD--GY 232

Query: 415 IMIT-SEDSKLRI--LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470
           ++ + SED  +R+  L   + +    G   S +  S +++  GK + S   D  + +W+
Sbjct: 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT--SLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 55/259 (21%), Positives = 99/259 (38%), Gaps = 65/259 (25%)

Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 234
           + +  H   + ++ FSPDGR L+S   D  +++W V +                      
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---------------------- 124

Query: 235 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 293
                                     L  L GH   V  +A+S +  ++ S S D T+++
Sbjct: 125 -----------------------GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Query: 294 WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RD 351
           W +   +C+     H   V  V F+P D    +S S DG +++W +   + +       +
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220

Query: 352 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF----HDRKKTSGNKITGIQF 407
            ++++ + PDG     GS  GT   +     DL+  +       H       N +T + +
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVW-----DLRTGECVQTLSGHT------NSVTSLAW 269

Query: 408 SRDESQRIMITSEDSKLRI 426
           S D  +R+   S D  +RI
Sbjct: 270 SPD-GKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.0 bits (245), Expect = 6e-22
 Identities = 71/344 (20%), Positives = 122/344 (35%), Gaps = 23/344 (6%)

Query: 143 KRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGED 202
                S     + + +       +      +S  ++ H+  I ++ FSPDG  L SG  D
Sbjct: 27  SLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSD 86

Query: 203 GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKK---KSSHVPVVIPDEVFQIEES 259
           G +++W + +     KS         +        G      SS +   +          
Sbjct: 87  GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK 146

Query: 260 PLQELHGHKGDVLDLAWSNSNYLL--SCSMDKTVRMWQVGCNQCLNVFDHHN-YVTCVQF 316
            ++ L GH   V  LA+S    LL    S+D T+++W +   + L+    H   V+ + F
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206

Query: 317 NPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG 372
           +P       SGS DG +R+W    G   +  +       V     + PDG     GS  G
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV---SSFSPDGSLLASGSSDG 263

Query: 373 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD--GV 430
           T   +    +   L  +  H         +  + FS D    +   S D  +R+ D    
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSS------SVLSVAFSPDGKL-LASGSSDGTVRLWDLETG 316

Query: 431 DVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDE 473
            ++         G   S SF+  G  +     DD  + +W+   
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.9 bits (224), Expect = 2e-19
 Identities = 66/318 (20%), Positives = 117/318 (36%), Gaps = 18/318 (5%)

Query: 174 SQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 232
            + ++ H   + +L FSPDG+ LASG   DG +++W + +      +        S+   
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAF 206

Query: 233 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 292
                    S      I        +     L GH   V+     + + L S S D T+R
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIR 266

Query: 293 MWQV-GCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 350
           +W +   +  L     H+  V  V F+P D     SGS DG VR+W +   +++    ++
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Query: 351 ---DVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406
                +S++ + PDG   + G S  GT   +                +     + +  + 
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT--------GKPLKTLEGHSNVLSVS 377

Query: 407 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV 466
           FS D  + +   S D  +R+ D             +    S  F+  GK + S   D  +
Sbjct: 378 FSPDG-RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTI 436

Query: 467 YVWNYDELCFPSSKQKNS 484
            +W+        S   + 
Sbjct: 437 RLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 48/164 (29%)

Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 234
             +  H G + ++ FSPDG  L S   DG +++W                    +   GK
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW--------------------DLSTGK 210

Query: 235 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL-SCSMDKTVRM 293
                                     L  L GH+  V  +A+S   YLL S S D T+R+
Sbjct: 211 -------------------------CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245

Query: 294 WQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIW 336
           W +   +C+     H N VT + ++P D     SGS DG +RIW
Sbjct: 246 WDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 36/278 (12%)

Query: 260 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 317
             + L GH G V  +A+S +   L + S D T+++W +   + L     H   V  V  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 318 PIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT 373
             D  Y  SGS D  +R+W    G C   V         +S++ + PDG+     S   T
Sbjct: 61  A-DGTYLASGSSDKTIRLWDLETGEC---VRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116

Query: 374 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-- 431
              +                        +  + FS D    +  +S+D  +++ D     
Sbjct: 117 IKVWDVETGKCLTT---LRGHTDW----VNSVAFSPD-GTFVASSSQDGTIKLWDLRTGK 168

Query: 432 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF 491
            +    G     +  S +F+  G+ ++S   D  + +W+       + K   ++R  E+ 
Sbjct: 169 CVATLTGHTGEVN--SVAFSPDGEKLLSSSSDGTIKLWDLS-----TGKCLGTLRGHENG 221

Query: 492 FSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET 529
                SVA       +    L +S   D + +  +L T
Sbjct: 222 V---NSVAF------SPDGYLLASGSEDGTIRVWDLRT 250

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 46/124 (37%)

Query: 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 232
               ++ H+  + ++ FSPDG  LASG EDG +R+W + +                    
Sbjct: 211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-------------------- 250

Query: 233 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTV 291
                                       +Q L GH   V  LAWS     L S S D T+
Sbjct: 251 -------------------------GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285

Query: 292 RMWQ 295
           R+W 
Sbjct: 286 RIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 15/35 (42%), Positives = 26/35 (74%)

Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 209
           + ++ H G + ++ FSPDG+YLASG +DG +++W 
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 209
           + ++ H G + ++ FSPDG  LASG +DG VR+W 
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 258 ESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMW 294
              L+ L GH G V  +A+S + N L S S D TVR+W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 259 SPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMW 294
             L+ L GH G V  +A+S +  YL S S D T+++W
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 300 QCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIW 336
           + L     H   VT V F+P D  Y  SGS DG +++W
Sbjct: 3   ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 300 QCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIW 336
           + L     H   VT V F+P D N   SGS DG VR+W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 18/103 (17%)

Query: 255 QIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCN----------QCL 302
           Q+ + P+ +L GH   +LDL ++   S  L S S D T+R+W++  N          QC+
Sbjct: 61  QMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120

Query: 303 NVFDHHNYVTCVQFNPIDDNYFI--SGSIDGKVRIWGV-CEKR 342
            +  H   ++ + +NP+  NY+I  S   D  V IW +  EKR
Sbjct: 121 -LKGHKKKISIIDWNPM--NYYIMCSSGFDSFVNIWDIENEKR 160

Length = 568

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 14/149 (9%)

Query: 177 IQAHKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI 235
           ++ H+G + +L FSPDG  L SGG +DG +R+W +                 SN      
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL-----RTGKPLKTLEGHSNVLSVSF 378

Query: 236 KFGKKKSSHVP----VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT 290
               +  S       V + D       S L+ L GH   V  L +S     L S S D T
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLS---TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435

Query: 291 VRMWQVGCNQCLNVFDHHNYVTCVQFNPI 319
           +R+W +  +     F     V   + + +
Sbjct: 436 IRLWDLKTSLKSVSFSPDGKVLASKSSDL 464

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 37/182 (20%)

Query: 176 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHV----------TSVAASCKSFTDDG 224
           E++ H+  +W++ +S  D   LASG +DG V++W +          T     C  F  + 
Sbjct: 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629

Query: 225 G----FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN 280
           G    FGS   + K+ +   ++  +P              L  + GH   V  + + +S+
Sbjct: 630 GRSLAFGS--ADHKVYYYDLRNPKLP--------------LCTMIGHSKTVSYVRFVDSS 673

Query: 281 YLLSCSMDKTVRMWQV-----GCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 334
            L+S S D T+++W +     G N+  L+ F  H  V       + D Y  +GS   +V 
Sbjct: 674 TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVF 733

Query: 335 IW 336
           ++
Sbjct: 734 VY 735

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	626
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0645	312	consensus WD40 repeat protein [General function pr	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
PTZ00421	493	coronin; Provisional	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG4227	609	consensus WD40 repeat protein [General function pr	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG0267	825	consensus Microtubule severing protein katanin p80	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.82
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.81
KOG1274	933	consensus WD40 repeat protein [General function pr	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.79
KOG1334	559	consensus WD40 repeat protein [General function pr	99.79
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.73
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
COG2319	466	FOG: WD40 repeat [General function prediction only	99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.69
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.69
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.69
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.68
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.68
KOG0649	325	consensus WD40 repeat protein [General function pr	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.66
KOG2139	445	consensus WD40 repeat protein [General function pr	99.65
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.64
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
PRK01742	429	tolB translocation protein TolB; Provisional	99.63
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.63
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
KOG1310	758	consensus WD40 repeat protein [General function pr	99.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.61
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.61
PRK01742	429	tolB translocation protein TolB; Provisional	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.6
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG0649	325	consensus WD40 repeat protein [General function pr	99.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.54
KOG2139	445	consensus WD40 repeat protein [General function pr	99.54
PRK03629	429	tolB translocation protein TolB; Provisional	99.53
PRK05137	435	tolB translocation protein TolB; Provisional	99.53
PRK02889	427	tolB translocation protein TolB; Provisional	99.52
KOG1334	559	consensus WD40 repeat protein [General function pr	99.52
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.51
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.5
KOG2315	566	consensus Predicted translation initiation factor	99.49
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.48
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.48
PRK04922	433	tolB translocation protein TolB; Provisional	99.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.46
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.41
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.4
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.4
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.39
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.38
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.37
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.37
PRK04792	448	tolB translocation protein TolB; Provisional	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.34
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.33
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.31
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
KOG2315	566	consensus Predicted translation initiation factor	99.3
PRK00178	430	tolB translocation protein TolB; Provisional	99.3
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.27
KOG2321	703	consensus WD40 repeat protein [General function pr	99.26
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.25
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.25
KOG4547	541	consensus WD40 repeat-containing protein [General	99.24
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.23
PRK01029	428	tolB translocation protein TolB; Provisional	99.22
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.18
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.17
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.17
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.16
COG4946	668	Uncharacterized protein related to the periplasmic	99.13
PRK01029	428	tolB translocation protein TolB; Provisional	99.11
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.09
KOG2314	698	consensus Translation initiation factor 3, subunit	99.08
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.07
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.06
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.06
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.05
KOG2314	698	consensus Translation initiation factor 3, subunit	99.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.04
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.02
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.0
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.98
KOG4547	541	consensus WD40 repeat-containing protein [General	98.98
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.98
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.97
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.97
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.96
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.96
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.93
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.92
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.89
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.88
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.88
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.88
COG4946	668	Uncharacterized protein related to the periplasmic	98.86
PRK04043	419	tolB translocation protein TolB; Provisional	98.85
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.85
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.83
PRK04043	419	tolB translocation protein TolB; Provisional	98.81
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.7
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.69
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.67
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.66
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.63
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.62
KOG2695	425	consensus WD40 repeat protein [General function pr	98.59
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.56
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.56
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.53
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.53
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.51
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.5
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.49
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.46
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.45
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.4
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.37
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.34
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.34
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.33
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.32
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.3
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.27
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.27
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.26
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.24
KOG2695	425	consensus WD40 repeat protein [General function pr	98.19
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.19
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.17
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.15
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.15
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.14
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.1
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.07
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.07
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.04
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.0
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.99
PRK02888	635	nitrous-oxide reductase; Validated	97.97
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.92
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.89
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.87
KOG3621	726	consensus WD40 repeat-containing protein [General	97.84
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.8
PRK02888	635	nitrous-oxide reductase; Validated	97.77
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.73
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.71
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.69
KOG3621	726	consensus WD40 repeat-containing protein [General	97.68
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.67
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.63
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.58
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.58
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.57
COG3391	381	Uncharacterized conserved protein [Function unknow	97.56
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.55
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.51
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.49
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.42
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.39
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.39
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.36
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.3
COG3391	381	Uncharacterized conserved protein [Function unknow	97.28
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.27
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.27
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.21
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.12
KOG2395	644	consensus Protein involved in vacuole import and d	96.97
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.91
PRK13616	591	lipoprotein LpqB; Provisional	96.86
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.86
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.66
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.65
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.57
PRK13616	591	lipoprotein LpqB; Provisional	96.51
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.48
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.46
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.38
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.34
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.34
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.08
KOG2395	644	consensus Protein involved in vacuole import and d	96.08
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.94
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.88
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.76
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.71
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.7
PHA02713	557	hypothetical protein; Provisional	95.52
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.51
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.51
KOG2444	238	consensus WD40 repeat protein [General function pr	95.41
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.18
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.13
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.12
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.99
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.89
KOG2444	238	consensus WD40 repeat protein [General function pr	94.72
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.64
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.57
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.56
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.44
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.43
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.41
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.22
PHA03098	534	kelch-like protein; Provisional	94.2
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.07
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.06
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.05
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.96
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.91
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.89
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.81
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.76
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.61
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.51
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.5
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.43
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.36
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.09
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.09
COG5276	370	Uncharacterized conserved protein [Function unknow	92.98
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.94
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.89
PRK10115	686	protease 2; Provisional	92.88
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.86
COG5167	776	VID27 Protein involved in vacuole import and degra	92.82
PHA02713	557	hypothetical protein; Provisional	92.59
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.54
COG5276	370	Uncharacterized conserved protein [Function unknow	92.21
PHA02790	480	Kelch-like protein; Provisional	91.39
PHA03098	534	kelch-like protein; Provisional	91.32
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.27
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.17
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.95
PRK13684	334	Ycf48-like protein; Provisional	90.27
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.18
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.17
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.98
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.88
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.65
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.28
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.07
COG5167	776	VID27 Protein involved in vacuole import and degra	89.0
PHA02790	480	Kelch-like protein; Provisional	88.66
PRK13684	334	Ycf48-like protein; Provisional	88.19
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.38
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.21
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.17
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.01
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.64
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	85.2
PF13449	326	Phytase-like: Esterase-like activity of phytase	85.09
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.56
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	84.3
KOG2377	657	consensus Uncharacterized conserved protein [Funct	83.51
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	83.46
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	83.17
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	82.28
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.22
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	82.2
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	81.92
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	81.64
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	80.44
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	80.03

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-60  Score=483.76  Aligned_cols=448  Identities=45%  Similarity=0.816  Sum_probs=338.2

Q ss_pred             chhHhhhcccccccccccccccccc-cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCC---------
Q 006909          154 NKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD---------  223 (626)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~---------  223 (626)
                      .++++++.++...++..++..|.+. +|.++|++|+||+||+|||+||.||.|+||.+.............         
T Consensus       239 ~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~  318 (712)
T KOG0283|consen  239 SRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA  318 (712)
T ss_pred             ceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh
Confidence            6788899999999999999999999 999999999999999999999999999999987733321111110         


Q ss_pred             -CCCcc-C----CCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccC
Q 006909          224 -GGFGS-N----AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG  297 (626)
Q Consensus       224 -~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~  297 (626)
                       +.... .    ...+.............+.++.+++.+..+|++.+.||.+.|.+|.|+.+++|+++|.|+||++|++.
T Consensus       319 ~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~  398 (712)
T KOG0283|consen  319 NSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPG  398 (712)
T ss_pred             ccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCC
Confidence             00000 0    01112222233333344788889999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 006909          298 CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY  377 (626)
Q Consensus       298 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~  377 (626)
                      ...|++.|.|.+.|+|++|+|.|.++|++|+.||.||||++...+++.+.+...-|++++|.|+|++.++|+.+|.+++|
T Consensus       399 ~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY  478 (712)
T KOG0283|consen  399 RKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY  478 (712)
T ss_pred             CcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC--CcceeeeeecCCCCCeEEEEEcCCC
Q 006909          378 KASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG--VDVIHKFKGLPKSGSQMSASFTTTG  454 (626)
Q Consensus       378 d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~sp~g  454 (626)
                      +..+.+.... .+..+..++.....||+++|.|.....+++.+.|..|+|||+  ...+..|++...........|+.||
T Consensus       479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg  558 (712)
T KOG0283|consen  479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG  558 (712)
T ss_pred             EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC
Confidence            9998887666 555565555555589999999987778999999999999999  6888999998788888899999999


Q ss_pred             CEEEEEeCCccEEEEECCCCC-CCCCCccCCccceeeeccCCcEEEEecCCCCcccc--cccCCCccccCccccccCCCC
Q 006909          455 KHIISIGDDCRVYVWNYDELC-FPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK--SLCSSSLRDCSQKWDNLETAP  531 (626)
Q Consensus       455 ~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~--~~~~~~~~~~~~~w~~~~~~~  531 (626)
                      ++|+++++|..||||+++... ...........+...|+......++.|........  .+....           ... 
T Consensus       559 k~IVs~seDs~VYiW~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~n~ss~~p~~~-----------~~~-  626 (712)
T KOG0283|consen  559 KHIVSASEDSWVYIWKNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAHNPSSNLPPLI-----------KAA-  626 (712)
T ss_pred             CEEEEeecCceEEEEeCCCCccccccccccccccccccccccccccccccccccccccccCCCCc-----------ccc-
Confidence            999999999999999997652 12233344455667777778888888887665542  111100           000 


Q ss_pred             cccCCCcccCCccccCCCC--cccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccccc--ccccceEEEE
Q 006909          532 WIRDSERFSLGSWFSNDGP--CRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAI--SATWGLVIVT  607 (626)
Q Consensus       532 ~~~~~~~~~~~~~~s~dg~--~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~dg~~ivt  607 (626)
                       ......+.   ..++...  -..+++|++.++..--....    ..     +..........+....  +.+||.+|+|
T Consensus       627 -~~~~~~~~---~s~~~~~~~~~~s~t~~e~~~~~s~~~~~----~~-----~~~~~~~~S~~~~~~~~~~~~wg~vivT  693 (712)
T KOG0283|consen  627 -LRPVNEFK---LSSPMRSLNSRGSATWPEEKLLDSPGASA----SS-----RSSIKFLMSGCQRSSSSSPHAWGMVIVT  693 (712)
T ss_pred             -cCcccccc---cCCccccccccccccCcccccccccCccc----cc-----ccccccccCCCccccccccCCCcceeee
Confidence             00000000   0111111  13456666554433211000    00     0000111122222211  3469999999


Q ss_pred             ecCCceEeeeeecCccccC
Q 006909          608 AGCDGMIKTFHNYGLPIRL  626 (626)
Q Consensus       608 ~g~Dg~Irvw~~~g~p~~~  626 (626)
                      |++||.||+++|||||+++
T Consensus       694 s~~~g~Ir~~~n~glp~~~  712 (712)
T KOG0283|consen  694 STLDGQIRCFQNYGLPRRV  712 (712)
T ss_pred             ccccceEEEEEecCCCCCC
Confidence            9999999999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.4e-47  Score=353.11  Aligned_cols=330  Identities=24%  Similarity=0.358  Sum_probs=272.8

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      -..+...+.||.++|.|++|+|+|++||||+.|.++|+||+.+                                     
T Consensus       104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-------------------------------------  146 (480)
T KOG0271|consen  104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-------------------------------------  146 (480)
T ss_pred             cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC-------------------------------------
Confidence            3456677899999999999999999999999999999999998                                     


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe-e-cCCCCeEEEEEeeC----CCC
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPI----DDN  322 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~-~-~~~~~v~~~~~~p~----~~~  322 (626)
                              ..|..+.++|...|.|++|+||| .|++|+.||+|++||..+|+++.. + +|..+|++++|.|.    ...
T Consensus       147 --------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r  218 (480)
T KOG0271|consen  147 --------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR  218 (480)
T ss_pred             --------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc
Confidence                    78899999999999999999999 899999999999999999887643 3 59999999999872    456


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          323 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       323 ~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +|++++.||.|+|||+..+.++ .+.+|..+|+|+.|--+| ++++|+.|++|++|+...+.+..       ..++|...
T Consensus       219 ~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r-------~lkGHahw  290 (480)
T KOG0271|consen  219 RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCR-------ELKGHAHW  290 (480)
T ss_pred             ceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHH-------hhcccchh
Confidence            8999999999999999987765 478999999999997666 89999999999999998765432       13445567


Q ss_pred             eEEEEEc-----------CCC------------------------CcEEEEEeCCCcEEEEeCCccee-eeeecCCCCCe
Q 006909          402 ITGIQFS-----------RDE------------------------SQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQ  445 (626)
Q Consensus       402 i~~l~~s-----------~~~------------------------~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~v  445 (626)
                      |+.++++           |.+                        +..+++|++|.++.+|+.....+ .-+..+|..-|
T Consensus       291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV  370 (480)
T KOG0271|consen  291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV  370 (480)
T ss_pred             eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence            7777766           222                        24699999999999999654332 22334589999


Q ss_pred             EEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCcccc
Q 006909          446 MSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWD  525 (626)
Q Consensus       446 ~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~  525 (626)
                      +.+.||||+++||++|-|..|++|+-.++                     .+++.                         
T Consensus       371 n~V~fSPd~r~IASaSFDkSVkLW~g~tG---------------------k~las-------------------------  404 (480)
T KOG0271|consen  371 NHVSFSPDGRYIASASFDKSVKLWDGRTG---------------------KFLAS-------------------------  404 (480)
T ss_pred             eeEEECCCccEEEEeecccceeeeeCCCc---------------------chhhh-------------------------
Confidence            99999999999999999999999998764                     22221                         


Q ss_pred             ccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccc--ccccccce
Q 006909          526 NLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGL  603 (626)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg~  603 (626)
                             +++|-..|+.++||.|++++++++. |.+|++|++.+.           ++......|...+-  .+++ ||.
T Consensus       405 -------fRGHv~~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tk-----------Kl~~DLpGh~DEVf~vDwsp-DG~  464 (480)
T KOG0271|consen  405 -------FRGHVAAVYQVAWSADSRLLVSGSK-DSTLKVWDVRTK-----------KLKQDLPGHADEVFAVDWSP-DGQ  464 (480)
T ss_pred             -------hhhccceeEEEEeccCccEEEEcCC-CceEEEEEeeee-----------eecccCCCCCceEEEEEecC-CCc
Confidence                   4556667888999999999999998 899999999987           33333333444443  4456 899


Q ss_pred             EEEEecCCceEeeee
Q 006909          604 VIVTAGCDGMIKTFH  618 (626)
Q Consensus       604 ~ivt~g~Dg~Irvw~  618 (626)
                      .+++||.|..+|+|.
T Consensus       465 rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  465 RVASGGKDKVLRLWR  479 (480)
T ss_pred             eeecCCCceEEEeec
Confidence            999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.6e-41  Score=319.47  Aligned_cols=280  Identities=20%  Similarity=0.310  Sum_probs=246.6

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      |-+.+|..+.||+|++.|||||.+|.++||+..+                                             .
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~---------------------------------------------~  207 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ---------------------------------------------C  207 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCC---------------------------------------------c
Confidence            7889999999999999999999999999999987                                             3


Q ss_pred             CCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                      ..+++|.||+..|.++.|+|.  + .++||+.||++++|++.+...+..+ +|...|..++|+| +|++|++++.|.+-+
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWR  286 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWR  286 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchh
Confidence            457899999999999999996  3 8999999999999999998888887 4889999999999 999999999999999


Q ss_pred             EEeCCCCe-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          335 IWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       335 iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      +||++++. +....+|...|.+++|+|||..+++|+.|..-+|||++++.....       ..+|...|.++.|+|+| +
T Consensus       287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~-------L~gH~k~I~~V~fsPNG-y  358 (459)
T KOG0272|consen  287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF-------LAGHIKEILSVAFSPNG-Y  358 (459)
T ss_pred             hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE-------ecccccceeeEeECCCc-e
Confidence            99999876 445789999999999999999999999999999999999987654       22345899999999998 8


Q ss_pred             EEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec
Q 006909          414 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  492 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  492 (626)
                      .|++|+.|++++|||++.....+....|..-|+.+.|+| .|.+|+|++.|++++||.-.+..                 
T Consensus       359 ~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~-----------------  421 (459)
T KOG0272|consen  359 HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS-----------------  421 (459)
T ss_pred             EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc-----------------
Confidence            999999999999999987666777778999999999998 78999999999999999977631                 


Q ss_pred             cCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909          493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       493 ~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                                 +-+                         .+.+|+.-|.++.+++||.+++++++ |.++++|.
T Consensus       422 -----------~~k-------------------------sLaGHe~kV~s~Dis~d~~~i~t~s~-DRT~KLW~  458 (459)
T KOG0272|consen  422 -----------PLK-------------------------SLAGHEGKVISLDISPDSQAIATSSF-DRTIKLWR  458 (459)
T ss_pred             -----------cch-------------------------hhcCCccceEEEEeccCCceEEEecc-Cceeeecc
Confidence                       000                         03455666777778888888888888 78888884

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.1e-40  Score=306.55  Aligned_cols=251  Identities=22%  Similarity=0.390  Sum_probs=216.9

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      .....+.++|...|.|++|+|||+.||+|+.||+|++||..++.                                    
T Consensus       147 eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~------------------------------------  190 (480)
T KOG0271|consen  147 ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ------------------------------------  190 (480)
T ss_pred             CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC------------------------------------
Confidence            34567889999999999999999999999999999999998853                                    


Q ss_pred             CccccccCCCceeeccCccceEEEEEcC------CCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCE
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSN------SNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~------~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~  323 (626)
                              .....+.+|...|++++|.|      ..+|++++.||+|+|||+..++++..+ +|+.+|+|+.|-  ...+
T Consensus       191 --------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gl  260 (480)
T KOG0271|consen  191 --------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGL  260 (480)
T ss_pred             --------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCce
Confidence                    34577889999999999976      238999999999999999999998887 599999999996  4679


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEe-----------eCCC-------------------------EEE
Q 006909          324 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI-----------PDGK-------------------------GFI  366 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~s-----------p~g~-------------------------~l~  366 (626)
                      +++||.|++|++|+...|.+.. +.+|...|+.++.+           |.++                         .++
T Consensus       261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV  340 (480)
T KOG0271|consen  261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV  340 (480)
T ss_pred             EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence            9999999999999998887654 77888899988776           3333                         499


Q ss_pred             EEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeE
Q 006909          367 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM  446 (626)
Q Consensus       367 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~  446 (626)
                      +|+.|.++.+|+......+...      ..+|..-|..+.||||+ +++++++.|..|++||.++....-...+|-+.|.
T Consensus       341 SgsDd~tlflW~p~~~kkpi~r------mtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VY  413 (480)
T KOG0271|consen  341 SGSDDFTLFLWNPFKSKKPITR------MTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVY  413 (480)
T ss_pred             EecCCceEEEecccccccchhh------hhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchhhhhhhccceeE
Confidence            9999999999997655543332      33456889999999998 8999999999999999887666555555999999


Q ss_pred             EEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          447 SASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       447 ~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .++|+.|.++|++||.|.++++|++.+.
T Consensus       414 qvawsaDsRLlVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  414 QVAWSADSRLLVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             EEEeccCccEEEEcCCCceEEEEEeeee
Confidence            9999999999999999999999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2e-38  Score=307.41  Aligned_cols=411  Identities=19%  Similarity=0.248  Sum_probs=305.4

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-------------cceeeeecCCCCCccCCCCCeeeec
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV-------------AASCKSFTDDGGFGSNAKEGKIKFG  238 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~  238 (626)
                      .....+.+|...++-.+|||.|-|+|+|...|+|||||....             ...-+.+..++..++...+++-+|+
T Consensus        50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg  129 (603)
T KOG0318|consen   50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG  129 (603)
T ss_pred             cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence            345567789999999999999999999999999999998762             2233445555555555544443332


Q ss_pred             CCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEE
Q 006909          239 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ  315 (626)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~  315 (626)
                      .       ++.++     .+..+.++.||...|+++.|-|..  +++||+.|++|.+|+-...+...+++ |...|.|+.
T Consensus       130 ~-------~F~~D-----SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR  197 (603)
T KOG0318|consen  130 H-------VFLWD-----SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR  197 (603)
T ss_pred             E-------EEEec-----CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence            1       11111     255678899999999999999987  89999999999999877666666664 889999999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe----ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEee
Q 006909          316 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF  391 (626)
Q Consensus       316 ~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~----~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  391 (626)
                      |+| +|.+|++++.||+|.+||-.+++.+..    ..|++.|.+++|+||++.+++++.|.+++|||+.+..+... +.+
T Consensus       198 ysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t-~~~  275 (603)
T KOG0318|consen  198 YSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST-WPM  275 (603)
T ss_pred             ECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE-eec
Confidence            999 999999999999999999999887653    36899999999999999999999999999999987654321 110


Q ss_pred             c-------------------------------------cccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--
Q 006909          392 H-------------------------------------DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--  432 (626)
Q Consensus       392 ~-------------------------------------~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--  432 (626)
                      .                                     ....+|...|+++..+|++ .+|++|+.||.|.-|+....  
T Consensus       276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccc
Confidence            0                                     1134578899999999998 89999999999999974311  


Q ss_pred             -----------eeeeeecC-------------------------------------------------------------
Q 006909          433 -----------IHKFKGLP-------------------------------------------------------------  440 (626)
Q Consensus       433 -----------~~~~~~~~-------------------------------------------------------------  440 (626)
                                 +..+....                                                             
T Consensus       355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~  434 (603)
T KOG0318|consen  355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ  434 (603)
T ss_pred             cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence                       00000000                                                             


Q ss_pred             -------CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC---CCCccCCccceeeeccCCcEEEEecCCCCcccc
Q 006909          441 -------KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP---SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK  510 (626)
Q Consensus       441 -------~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~  510 (626)
                             -.-...+++++|++..++.|+.|+.|+||.+......   ........+++++++|++.++|++-......++
T Consensus       435 ~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y  514 (603)
T KOG0318|consen  435 TKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY  514 (603)
T ss_pred             CcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence                   0011235788999999999999999999999986321   222334456677777777777776665666666


Q ss_pred             cccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccC
Q 006909          511 SLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNN  590 (626)
Q Consensus       511 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  590 (626)
                      ++.+...  ....|         .-|...+..++|||+..++|+++- |..|.||++....          ........|
T Consensus       515 d~~s~~~--~~~~w---------~FHtakI~~~aWsP~n~~vATGSl-Dt~Viiysv~kP~----------~~i~iknAH  572 (603)
T KOG0318|consen  515 DVASREV--KTNRW---------AFHTAKINCVAWSPNNKLVATGSL-DTNVIIYSVKKPA----------KHIIIKNAH  572 (603)
T ss_pred             EcccCce--eccee---------eeeeeeEEEEEeCCCceEEEeccc-cceEEEEEccChh----------hheEecccc
Confidence            6555432  11111         124556899999999999999999 8999999998762          222333445


Q ss_pred             CccccccccccceEEEEecCCceEeeeee
Q 006909          591 VDDVRAISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       591 ~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                      ..++..+.-.|...+||+|.|..||+|++
T Consensus       573 ~~gVn~v~wlde~tvvSsG~Da~iK~W~v  601 (603)
T KOG0318|consen  573 LGGVNSVAWLDESTVVSSGQDANIKVWNV  601 (603)
T ss_pred             ccCceeEEEecCceEEeccCcceeEEecc
Confidence            55555555557889999999999999986

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.1e-39  Score=303.95  Aligned_cols=249  Identities=23%  Similarity=0.390  Sum_probs=224.6

Q ss_pred             cccccccccccccCcEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909          169 TALYTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  246 (626)
Q Consensus       169 ~~~~~~~~l~~H~~~V~~l~fspd--g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (626)
                      +.....++|.||++.|.++.|+|.  +..||||+.||++++|++.+                                  
T Consensus       205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~----------------------------------  250 (459)
T KOG0272|consen  205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ----------------------------------  250 (459)
T ss_pred             CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC----------------------------------
Confidence            455788899999999999999997  56999999999999999987                                  


Q ss_pred             eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEE
Q 006909          247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF  324 (626)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l  324 (626)
                                 ..++..+.+|...|..++|+|+| +|+|++.|.+-++||++++..+... +|...|.+++|+| +|.++
T Consensus       251 -----------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~  318 (459)
T KOG0272|consen  251 -----------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLA  318 (459)
T ss_pred             -----------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCcee
Confidence                       57899999999999999999999 9999999999999999998776655 5999999999999 99999


Q ss_pred             EEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          325 ISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      ++|+.|..-+|||+++++.+ .+.+|..+|.+++|+|+|..|++|+.|++++|||++.... ...+      +.|.+-|+
T Consensus       319 ~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~i------pAH~nlVS  391 (459)
T KOG0272|consen  319 ATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTI------PAHSNLVS  391 (459)
T ss_pred             eccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceec------ccccchhh
Confidence            99999999999999998865 5778999999999999999999999999999999998766 3233      34458999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      .+.|+|+.+++|++++.|++++||...+....-...+|.+.|.++.+++++.+|++++.|+++++|.
T Consensus       392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             heEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999997679999999999999999886555555556999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.3e-37  Score=278.61  Aligned_cols=285  Identities=20%  Similarity=0.336  Sum_probs=235.5

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcc-----------eeeeecCCCCCccCCCCCee-eec
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA-----------SCKSFTDDGGFGSNAKEGKI-KFG  238 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~  238 (626)
                      +...++|+||.+.|.+|.|++|.++|++++.||.+.|||.-+...           ..-+|+|.+.+++.....+. .++
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            344588999999999999999999999999999999999877544           23356676666543332222 221


Q ss_pred             CCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEe
Q 006909          239 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN  317 (626)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~  317 (626)
                      .......         .-.....+.+.+|++.+.|+.|-+|+.|+|+|.|.+..+||+++++.+..|. |.+.|.++.+.
T Consensus       125 ~ls~~d~---------~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~  195 (343)
T KOG0286|consen  125 PLSTRDA---------EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS  195 (343)
T ss_pred             ecccccc---------cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence            1111100         0001335678999999999999999999999999999999999999999994 99999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909          318 PIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  396 (626)
Q Consensus       318 p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  396 (626)
                      |.+++.|++|+-|++.++||++.+..++ +.+|...|++++|.|+|..+++|+.|+++++||++..+.... ..    ..
T Consensus       196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-ys----~~  270 (343)
T KOG0286|consen  196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-YS----HD  270 (343)
T ss_pred             CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee-ec----cC
Confidence            9999999999999999999999987665 789999999999999999999999999999999998765332 11    12


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      ....+|++++||..| ++|++|..|.++.+||.-+....-...+|...|.++..+|||.-+++||.|.+++||.
T Consensus       271 ~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  271 SIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            224789999999998 8999999999999999876666666666999999999999999999999999999994

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.8e-38  Score=291.08  Aligned_cols=360  Identities=19%  Similarity=0.317  Sum_probs=286.8

Q ss_pred             hccccccceeeeeeccc--cccccccccccCCC-Ccc--cccChhhHHHHHHHHHHhhcc--ccchhccccCCCCCCCCc
Q 006909           80 LEQDQMNECVVTLEGES--NGFSQSVDKFENPF-PEC--KGVNIKKVKKLWKRIISMKKR--NVETCMSEKRKPNSEKPK  152 (626)
Q Consensus        80 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  152 (626)
                      |.++|+++.++.+..+.  ++..++...+-.+. ..+  ...+...++++|....++||+  .++...++...+......
T Consensus         5 ~~~~~~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~~~~~~~g~ll~kkwtSv~rlqKki~~Les~l~~~~~el~~g~p   84 (406)
T KOG0295|consen    5 LSERQRDEINMAIADLSGSNGYSESDRIFHKEASLATEMRKKDGGLLEKKWTSVDRLQKKIRELESKLDETGDELIAGDP   84 (406)
T ss_pred             ecccchHHHHHHHHhhhccccccccceeEeecCCCcccccccccceeeccccccchhHHHHHHHHhhhcccccccccCCC
Confidence            56788888888887774  34444444444433 333  334568999999999999987  344444443322221111


Q ss_pred             cchhHhhhcccccccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCC
Q 006909          153 ANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE  232 (626)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  232 (626)
                           ....+....+.+++.+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+                    
T Consensus        85 -----t~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t--------------------  139 (406)
T KOG0295|consen   85 -----TGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET--------------------  139 (406)
T ss_pred             -----CcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccc--------------------
Confidence                 1122333446788888999999999999999999999999999999999999998                    


Q ss_pred             CeeeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-CeeeEee-cCCC
Q 006909          233 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVF-DHHN  309 (626)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-~~~~~~~-~~~~  309 (626)
                                               ++....+.||+..|.+|+|+..| +|++++.|-.+++||..+ .++++.. +|..
T Consensus       140 -------------------------g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h  194 (406)
T KOG0295|consen  140 -------------------------GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH  194 (406)
T ss_pred             -------------------------hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence                                     44578899999999999999988 899999999999999976 4555544 6888


Q ss_pred             CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeE
Q 006909          310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  388 (626)
Q Consensus       310 ~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~  388 (626)
                      .|.++.|-| .++++++++.|.+|+.|++.++-++. +.+|...|..+..+.||..+++++.|.++++|-+.+.+.... 
T Consensus       195 ~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~-  272 (406)
T KOG0295|consen  195 GVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE-  272 (406)
T ss_pred             ceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh-
Confidence            999999999 89999999999999999999988765 778899999999999999999999999999999988865432 


Q ss_pred             EeeccccccCCCCeEEEEEcCC--------------CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC
Q 006909          389 VDFHDRKKTSGNKITGIQFSRD--------------ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  454 (626)
Q Consensus       389 ~~~~~~~~~~~~~i~~l~~s~~--------------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g  454 (626)
                            .+.|..+|.+++|.|.              +.+++.+++.|++|++||+..+...+...+|..+|..++|+|.|
T Consensus       273 ------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G  346 (406)
T KOG0295|consen  273 ------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG  346 (406)
T ss_pred             ------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC
Confidence                  3345578899988663              23699999999999999999998888888899999999999999


Q ss_pred             CEEEEEeCCccEEEEECCCCC-CCCCCccCCccceeeeccCCcE
Q 006909          455 KHIISIGDDCRVYVWNYDELC-FPSSKQKNSVRSCEHFFSEGVS  497 (626)
Q Consensus       455 ~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~g~~  497 (626)
                      +||+++.+|+++++||+++.. ............++.|+.+..+
T Consensus       347 kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~  390 (406)
T KOG0295|consen  347 KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPY  390 (406)
T ss_pred             eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCce
Confidence            999999999999999999873 3333334445566666665544

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-36  Score=270.64  Aligned_cols=293  Identities=16%  Similarity=0.273  Sum_probs=237.9

Q ss_pred             ccccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      .+..+|++|++.|+.++..+.+ ..|++++.|.++.+|++......                                  
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------------------   51 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------------------   51 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------------------
Confidence            4456789999999999999874 58999999999999999863110                                  


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEe
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                            -+.+++.+.||...|..++.++++ +.++++.|+++++||+.+++..+.| +|...|.+++|+| +...+++|+
T Consensus        52 ------~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGS  124 (315)
T KOG0279|consen   52 ------YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGS  124 (315)
T ss_pred             ------cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCC
Confidence                  156788999999999999999998 8899999999999999999988888 5999999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEEEeccC--CCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909          329 IDGKVRIWGVCEKRVVDWADV--RDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~~~~~--~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      .|.+|++|++.+.........  ++.|+|+.|+|+  ..+|+.++.|+++++||+++.+....       ..+|.+.++.
T Consensus       125 rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~-------~~gh~~~v~t  197 (315)
T KOG0279|consen  125 RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT-------FIGHSGYVNT  197 (315)
T ss_pred             CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc-------cccccccEEE
Confidence            999999999998877766554  789999999998  67999999999999999998765432       3445689999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCC
Q 006909          405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS  484 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~  484 (626)
                      +++|||| .++++|+.||.+.+||+++....+.. .+...|.+++|+|+.-+|+.+. +..|+|||+++...........
T Consensus       198 ~~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~  274 (315)
T KOG0279|consen  198 VTVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDG  274 (315)
T ss_pred             EEECCCC-CEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccc
Confidence            9999998 69999999999999999987775544 4788999999999877776665 5569999999874332222221


Q ss_pred             ccceeeeccCCcEEEEecCCCCcccccccCCC
Q 006909          485 VRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS  516 (626)
Q Consensus       485 ~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~  516 (626)
                      .-.. .-..+-..+.++|+++|..|+.--.+.
T Consensus       275 ~g~s-~~~~~~~clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  275 IGPS-SKAGDPICLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             cccc-cccCCcEEEEEEEcCCCcEEEeeecCC
Confidence            1110 001123457788888888887654443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-36  Score=286.77  Aligned_cols=316  Identities=21%  Similarity=0.373  Sum_probs=257.7

Q ss_pred             ccccccccccccCCCCcccccChhhHHHHHHHHHHhhccccchhccccCCCCCCCCccchhHhhhccccccccccccccc
Q 006909           96 SNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQ  175 (626)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (626)
                      ...+...+++++.++++..++|+++++.|.++.+..|+...--.++-           ..+...++........+.+..+
T Consensus       150 ~n~R~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsl-----------dsvsll~Dh~c~~~qip~qt~q  218 (519)
T KOG0293|consen  150 NNERDKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSL-----------DSVSLLSDHFCGRLQIPSQTWQ  218 (519)
T ss_pred             chhHHHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhccc-----------chhhhhhhcccCcccCCchhhh
Confidence            44667779999999999999999999999999999887643221110           0122222222222334567788


Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      .|..|++.|+-+.||++|+|||||+.|.+..||.+.....                                        
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----------------------------------------  258 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----------------------------------------  258 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----------------------------------------
Confidence            9999999999999999999999999999999999875211                                        


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                        -+..+++.+|..+|..+.||||. +|++|+.|..+.+||+.+|.+...+.+.  ..+.+++|.| |+..+++|+.|++
T Consensus       259 --~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~  335 (519)
T KOG0293|consen  259 --FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRT  335 (519)
T ss_pred             --eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCc
Confidence              23478899999999999999987 9999999999999999999999988754  7899999999 9999999999999


Q ss_pred             EEEEeCCCCeEEEeccCC-CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          333 VRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~~~-~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      +..||+.+.....+.+.+ ..|.+++..+||+++++.+.|..|++|+..+..... .+.       ...+|++++.|.++
T Consensus       336 i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lis-------e~~~its~~iS~d~  407 (519)
T KOG0293|consen  336 IIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-LIS-------EEQPITSFSISKDG  407 (519)
T ss_pred             EEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-ccc-------ccCceeEEEEcCCC
Confidence            999999988877777665 459999999999999999999999999987543321 111       13789999999997


Q ss_pred             CcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCC
Q 006909          412 SQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       412 ~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                       +++++.-.+..|++||+.+  .+..+.++.....+..-+|.- +..++++||+|+.||||+..++
T Consensus       408 -k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg  472 (519)
T KOG0293|consen  408 -KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG  472 (519)
T ss_pred             -cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence             7899999999999999885  445566665666777778864 5589999999999999999876

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.9e-35  Score=294.34  Aligned_cols=377  Identities=19%  Similarity=0.268  Sum_probs=297.3

Q ss_pred             cccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909          167 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  246 (626)
Q Consensus       167 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (626)
                      ++.++.+.+++.+|-+.|+++.|+.|.++|++|+.|.+++||.+...+                                
T Consensus       131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k--------------------------------  178 (893)
T KOG0291|consen  131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK--------------------------------  178 (893)
T ss_pred             ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc--------------------------------
Confidence            678888999999999999999999999999999999999999997621                                


Q ss_pred             eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-----------------------Cee-
Q 006909          247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----------------------NQC-  301 (626)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-----------------------~~~-  301 (626)
                                 +-....+.+|...|.+.-|..+. .+++.+.||.+.+|....                       ++. 
T Consensus       179 -----------~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek  247 (893)
T KOG0291|consen  179 -----------NLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK  247 (893)
T ss_pred             -----------ccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence                       12256778999999999999876 899999999999997650                       110 


Q ss_pred             --------eEe--e-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCC-CCeEEEEEeeCCCEEEEEe
Q 006909          302 --------LNV--F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGS  369 (626)
Q Consensus       302 --------~~~--~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~i~~i~~sp~g~~l~~g~  369 (626)
                              ...  + .....|++.+|++ .-+.|++|-..|...+|.+..-.++...... ..|..++|+..|.+|+.|+
T Consensus       248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~  326 (893)
T KOG0291|consen  248 THKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC  326 (893)
T ss_pred             hcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC
Confidence                    001  1 1336899999999 8899999999999999999998888765554 7899999999999999988


Q ss_pred             cC-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEE
Q 006909          370 IT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSA  448 (626)
Q Consensus       370 ~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  448 (626)
                      .. |.+-+|+........+       ..+|...+++++++||| +++++|+.||+|+|||........+...|...|+.+
T Consensus       327 ~klgQLlVweWqsEsYVlK-------QQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v  398 (893)
T KOG0291|consen  327 SKLGQLLVWEWQSESYVLK-------QQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAV  398 (893)
T ss_pred             CccceEEEEEeeccceeee-------ccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEE
Confidence            75 8999999987765443       34456899999999998 899999999999999999866666666699999999


Q ss_pred             EEcCCCCEEEEEeCCccEEEEECCCCCC--CCCCccCCccceeeeccCCcEEEEecCCCC--cccccccCCCccccCccc
Q 006909          449 SFTTTGKHIISIGDDCRVYVWNYDELCF--PSSKQKNSVRSCEHFFSEGVSVAVQWPGIG--TEQKSLCSSSLRDCSQKW  524 (626)
Q Consensus       449 ~~sp~g~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~~~~g~~~av~~s~~~--~~l~~~~~~~~~~~~~~w  524 (626)
                      .|+..|+.|++.+.||+|+.||+.....  ..........+|++.-|.|.++.++ ..+.  ..+|++..+.+       
T Consensus       399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG-~~d~F~IfvWS~qTGql-------  470 (893)
T KOG0291|consen  399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG-AQDSFEIFVWSVQTGQL-------  470 (893)
T ss_pred             EEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee-ccceEEEEEEEeecCee-------
Confidence            9999999999999999999999987521  2222333445677777777664443 2222  23333333211       


Q ss_pred             cccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceE
Q 006909          525 DNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLV  604 (626)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~  604 (626)
                           .-.+.+|+.+|.+++|+|+|..|++++| |.+|++||+-... .        ..+.+-..+.....+++| ||+-
T Consensus       471 -----lDiLsGHEgPVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s~-~--------~vEtl~i~sdvl~vsfrP-dG~e  534 (893)
T KOG0291|consen  471 -----LDILSGHEGPVSGLSFSPDGSLLASGSW-DKTVRIWDIFSSS-G--------TVETLEIRSDVLAVSFRP-DGKE  534 (893)
T ss_pred             -----eehhcCCCCcceeeEEccccCeEEeccc-cceEEEEEeeccC-c--------eeeeEeeccceeEEEEcC-CCCe
Confidence                 1136789999999999999999999999 8999999987541 1        112223344444467777 8999


Q ss_pred             EEEecCCceEeeeee
Q 006909          605 IVTAGCDGMIKTFHN  619 (626)
Q Consensus       605 ivt~g~Dg~Irvw~~  619 (626)
                      |+.+..||.|.+|+.
T Consensus       535 laVaTldgqItf~d~  549 (893)
T KOG0291|consen  535 LAVATLDGQITFFDI  549 (893)
T ss_pred             EEEEEecceEEEEEh
Confidence            999999999999985

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-35  Score=297.85  Aligned_cols=408  Identities=18%  Similarity=0.239  Sum_probs=302.2

Q ss_pred             cccccccccccc-ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCccee-----------eeecCCCCC---ccCCCC
Q 006909          168 FTALYTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-----------KSFTDDGGF---GSNAKE  232 (626)
Q Consensus       168 ~~~~~~~~~l~~-H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~-----------~~~~~~~~~---~~~~~~  232 (626)
                      ++.-.+.+.+++ |+++|.-|+|+|.|..||+|+.||.++|||+..+.+..           ..|.+....   .....+
T Consensus        91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D  170 (775)
T KOG0319|consen   91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD  170 (775)
T ss_pred             cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence            344466777788 99999999999999999999999999999998765432           222222221   111222


Q ss_pred             CeeeecCCCCCCceeecCCcccccc--CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec---
Q 006909          233 GKIKFGKKKSSHVPVVIPDEVFQIE--ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---  306 (626)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---  306 (626)
                      +.++                +|++.  ..+++.+..|.+.|++++|++++ .+++++.|..+.|||+.+.++.++..   
T Consensus       171 ~~v~----------------vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye  234 (775)
T KOG0319|consen  171 GTVR----------------VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE  234 (775)
T ss_pred             ceEE----------------EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhh
Confidence            2222                23332  12477888999999999999987 89999999999999974433222211   


Q ss_pred             --------------------------------------------------------------------------------
Q 006909          307 --------------------------------------------------------------------------------  306 (626)
Q Consensus       307 --------------------------------------------------------------------------------  306 (626)
                                                                                                      
T Consensus       235 ~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~  314 (775)
T KOG0319|consen  235 SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT  314 (775)
T ss_pred             heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence                                                                                            


Q ss_pred             -------CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEc
Q 006909          307 -------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  379 (626)
Q Consensus       307 -------~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~  379 (626)
                             .++.|..++|--...++++.+++.+.+|+|++.+..+.-+.+|...|.+++...+|.+|++|+.|.++++|.+
T Consensus       315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~  394 (775)
T KOG0319|consen  315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL  394 (775)
T ss_pred             EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence                   2223444554322567777888888888887777777778899999999997778899999999999999999


Q ss_pred             CCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-------ce--eeeeecCCCCCeEEEEE
Q 006909          380 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-------VI--HKFKGLPKSGSQMSASF  450 (626)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-------~~--~~~~~~~~~~~v~~~~~  450 (626)
                      +++.....   ......+|.+.|.+++++..+..+|++++.|+++++|++..       ..  ..+....|...|+++++
T Consensus       395 ~~~~~~~~---~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai  471 (775)
T KOG0319|consen  395 NNNCSKSL---CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI  471 (775)
T ss_pred             cCCcchhh---hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence            55443222   22234567799999999998888999999999999999764       11  11233568899999999


Q ss_pred             cCCCCEEEEEeCCccEEEEECCCCC--CCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccC
Q 006909          451 TTTGKHIISIGDDCRVYVWNYDELC--FPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE  528 (626)
Q Consensus       451 sp~g~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~  528 (626)
                      +|+.++|+|||.|.+.+||+++...  .....|... .-|+.|+|....+|.+-.+....+|.+..            .+
T Consensus       472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG-vw~V~Fs~~dq~laT~SgD~TvKIW~is~------------fS  538 (775)
T KOG0319|consen  472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG-VWCVSFSKNDQLLATCSGDKTVKIWSIST------------FS  538 (775)
T ss_pred             cCCCceEEecccccceeeecccCceEEEEeeCCccc-eEEEEeccccceeEeccCCceEEEEEecc------------ce
Confidence            9999999999999999999999652  233444443 34557777777766665555555565544            23


Q ss_pred             CCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccc-cceEEEE
Q 006909          529 TAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISAT-WGLVIVT  607 (626)
Q Consensus       529 ~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~ivt  607 (626)
                      ....+.+|...|....|-.+|+.++|++. +|.|++|++.++           .+......|...+-+++.. ...+++|
T Consensus       539 ClkT~eGH~~aVlra~F~~~~~qliS~~a-dGliKlWnikt~-----------eC~~tlD~H~DrvWaL~~~~~~~~~~t  606 (775)
T KOG0319|consen  539 CLKTFEGHTSAVLRASFIRNGKQLISAGA-DGLIKLWNIKTN-----------ECEMTLDAHNDRVWALSVSPLLDMFVT  606 (775)
T ss_pred             eeeeecCccceeEeeeeeeCCcEEEeccC-CCcEEEEeccch-----------hhhhhhhhccceeEEEeecCccceeEe
Confidence            44557889999999999999999999887 899999999998           6667777777777665533 6779999


Q ss_pred             ecCCceEeeeee
Q 006909          608 AGCDGMIKTFHN  619 (626)
Q Consensus       608 ~g~Dg~Irvw~~  619 (626)
                      ||.||.|.+|+=
T Consensus       607 gg~Dg~i~~wkD  618 (775)
T KOG0319|consen  607 GGGDGRIIFWKD  618 (775)
T ss_pred             cCCCeEEEEeec
Confidence            999999999973

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-34  Score=259.50  Aligned_cols=246  Identities=20%  Similarity=0.395  Sum_probs=206.5

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      ...+.|+||...|..+..++||++.++++.|+++++||+.+                                       
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~---------------------------------------   94 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT---------------------------------------   94 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC---------------------------------------
Confidence            34677889999999999999999999999999999999998                                       


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCC-CCEEEEE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID-DNYFISG  327 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~-~~~l~s~  327 (626)
                            +++.+.|.||...|.+++|++++ .+++|+.|++|++|++..........  +.+.|+|+.|+|.. ..+|+++
T Consensus        95 ------g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~  168 (315)
T KOG0279|consen   95 ------GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA  168 (315)
T ss_pred             ------CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence                  45678899999999999999987 99999999999999998665554444  37899999999932 6799999


Q ss_pred             eCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          328 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +.|++|++||+++.++.. +.+|.+.++.+.++|||...++|+.||.+.+||++..+.... +       .+...|.+++
T Consensus       169 s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys-l-------~a~~~v~sl~  240 (315)
T KOG0279|consen  169 SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS-L-------EAFDIVNSLC  240 (315)
T ss_pred             cCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe-c-------cCCCeEeeEE
Confidence            999999999999988764 778999999999999999999999999999999998876322 1       2247899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCCcceeee--e----ec---CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          407 FSRDESQRIMITSEDSKLRILDGVDVIHKF--K----GL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~----~~---~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      |+|+.  +.+++..+..|+|||+.......  .    +.   .......+++|+++|..|++|-.|+.|++|.+.
T Consensus       241 fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  241 FSPNR--YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ecCCc--eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            99984  66677777789999976432221  1    11   112234678999999999999999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.2e-34  Score=250.64  Aligned_cols=259  Identities=20%  Similarity=0.381  Sum_probs=223.7

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      .-.+.++++-..+.|+.+...||++.||+|+. -.||+||+.+..                                   
T Consensus        29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-----------------------------------   72 (311)
T KOG0315|consen   29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-----------------------------------   72 (311)
T ss_pred             cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-----------------------------------
Confidence            34566778777889999999999999999986 469999998742                                   


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                              ..|+.++.+|+..|+.+.|..+| .+++||.||+++|||++...+.+.+.|..+|+++..+| +...|++|.
T Consensus        73 --------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~d  143 (311)
T KOG0315|consen   73 --------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGD  143 (311)
T ss_pred             --------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeec
Confidence                    35789999999999999999988 89999999999999999999999999999999999999 888999999


Q ss_pred             CCCcEEEEeCCCCeEEE--eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          329 IDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      .+|.|++||+....+..  .......|.++...|||..++.+...|++++|++-+...... +....+.+.|...+..+.
T Consensus       144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~-l~P~~k~~ah~~~il~C~  222 (311)
T KOG0315|consen  144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE-LEPVHKFQAHNGHILRCL  222 (311)
T ss_pred             CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc-ceEhhheecccceEEEEE
Confidence            99999999998875443  344557899999999999999999999999999987554333 223334667789999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          407 FSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      +|||+ ++|++++.|.+++||++.+. ........|..++..++||.||+||++|+.|+.+++|++..+.
T Consensus       223 lSPd~-k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  223 LSPDV-KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             ECCCC-cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence            99997 89999999999999998866 3333445588899999999999999999999999999999874

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.9e-35  Score=284.53  Aligned_cols=276  Identities=23%  Similarity=0.455  Sum_probs=234.4

Q ss_pred             ccccccccccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      +-.+..++.||+..|+++.|.| .+.+|++|+.|+.|+||++-.                                    
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~------------------------------------  246 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD------------------------------------  246 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec------------------------------------
Confidence            4456778899999999999999 899999999999999999976                                    


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                              +..+++++.||..+|.+++|+++| .++|+|.|+.|++||+++|+++..|.....++|+.|+|.+.+.|++|
T Consensus       247 --------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G  318 (503)
T KOG0282|consen  247 --------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG  318 (503)
T ss_pred             --------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe
Confidence                    256789999999999999999998 89999999999999999999999999999999999999444999999


Q ss_pred             eCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          328 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +.|+.|+.||+++++++. ...|-+.|..+.|-++|+++++.+.|++++||+.+..-.........      .....++.
T Consensus       319 ~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~------~hsmP~~~  392 (503)
T KOG0282|consen  319 GSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE------MHTMPCLT  392 (503)
T ss_pred             cCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh------hccCccee
Confidence            999999999999999876 45667899999999999999999999999999988664432222211      24677899


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCC-----cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909          407 FSRDESQRIMITSEDSKLRILDGV-----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  481 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~  481 (626)
                      .+|++ .++++-+.|+.|.++.+.     +....++++.-.+.-..+.|||||.+|++|+.||.+.+||..+-...... 
T Consensus       393 ~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l-  470 (503)
T KOG0282|consen  393 LHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL-  470 (503)
T ss_pred             cCCCC-CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-
Confidence            99998 799999999999999865     45566777767778889999999999999999999999999875222111 


Q ss_pred             cCCccceeeeccCCcEEEEecCCCC
Q 006909          482 KNSVRSCEHFFSEGVSVAVQWPGIG  506 (626)
Q Consensus       482 ~~~~~~~~~~~~~g~~~av~~s~~~  506 (626)
                              . .+++..+.+.|.|..
T Consensus       471 --------k-ah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  471 --------K-AHDQPCIGVDWHPVE  486 (503)
T ss_pred             --------c-cCCcceEEEEecCCC
Confidence                    1 125677788888774

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5e-34  Score=259.12  Aligned_cols=248  Identities=27%  Similarity=0.472  Sum_probs=217.5

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      ..+.+|++.|+.++|+|+|.+|||||.|..|.+|++..                                          
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g------------------------------------------   78 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG------------------------------------------   78 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc------------------------------------------
Confidence            34679999999999999999999999999999999765                                          


Q ss_pred             cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                        +.+....+.+|.+.|..+.|.+++ .+++++.|++|+.||+++|++++.+. |...|+.+.-+.....++.+|+.|++
T Consensus        79 --dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t  156 (338)
T KOG0265|consen   79 --DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT  156 (338)
T ss_pred             --cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCce
Confidence              134456777999999999999987 99999999999999999999999986 88889998866656678889999999


Q ss_pred             EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          333 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      +++||++++..++....+.+++++.|...+..+.+|+-|+.|++||++.+.....       ..+|.++|+.+..+|+| 
T Consensus       157 ~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-------lsGh~DtIt~lsls~~g-  228 (338)
T KOG0265|consen  157 LKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-------LSGHADTITGLSLSRYG-  228 (338)
T ss_pred             EEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE-------eecccCceeeEEeccCC-
Confidence            9999999999998888899999999999999999999999999999987775432       33456899999999998 


Q ss_pred             cEEEEEeCCCcEEEEeCC------cceeeeeecCCC--CCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          413 QRIMITSEDSKLRILDGV------DVIHKFKGLPKS--GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~------~~~~~~~~~~~~--~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .++++-+.|.++++||.+      .++..+.++.|.  .....++|+|+++.+.+|+.|..+++||....
T Consensus       229 s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  229 SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence            799999999999999976      346667775554  34567899999999999999999999998874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.6e-33  Score=253.45  Aligned_cols=287  Identities=15%  Similarity=0.241  Sum_probs=234.6

Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      ...++|+||.+.|.++.|+++. +|+++|.||.+.|||.-+....+.+. ...+|..++|+| .++++++|+.|+...||
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEE
Confidence            3458899999999999999987 99999999999999998888877776 667999999999 99999999999999999


Q ss_pred             eCCCC--e-----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          337 GVCEK--R-----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       337 d~~~~--~-----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      ++.+.  +     ...+.+|.+.+.++.|-+|+ .|++++.|.++.+||+++++....   +    .+|.+.|.++.++|
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~---f----~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQV---F----HGHTGDVMSLSLSP  196 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEE---e----cCCcccEEEEecCC
Confidence            99754  1     23478999999999998754 799999999999999998876432   2    34579999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909          410 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  489 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  489 (626)
                      ..++.+++|+.|+..++||++..........|...|+++.|.|+|.-+++|++|++.++||+............      
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~------  270 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD------  270 (343)
T ss_pred             CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC------
Confidence            44589999999999999999976666566669999999999999999999999999999999975322211111      


Q ss_pred             eeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCC--cccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909          490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       490 ~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                        +....+..++||..|.+|+.-..   +....+|+.+....  .+.+|+..|..+..+|||..+++++| |..|+||.
T Consensus       271 --~~~~gitSv~FS~SGRlLfagy~---d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW-Ds~lriW~  343 (343)
T KOG0286|consen  271 --SIICGITSVAFSKSGRLLFAGYD---DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW-DSTLRIWA  343 (343)
T ss_pred             --cccCCceeEEEcccccEEEeeec---CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch-hHheeecC
Confidence              01122445666666666655322   24456777776654  56789999999999999999999999 89999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.9e-33  Score=247.52  Aligned_cols=271  Identities=19%  Similarity=0.312  Sum_probs=223.2

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEE
Q 006909          194 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  273 (626)
Q Consensus       194 ~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  273 (626)
                      -+|||+|.|.+||+|...+|                                             .+..+++...+.|+.
T Consensus        11 viLvsA~YDhTIRfWqa~tG---------------------------------------------~C~rTiqh~dsqVNr   45 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTG---------------------------------------------ICSRTIQHPDSQVNR   45 (311)
T ss_pred             eEEEeccCcceeeeeehhcC---------------------------------------------eEEEEEecCccceee
Confidence            48999999999999999984                                             446677767789999


Q ss_pred             EEEcCCCeEEEEeCCCcEEEeccCCCe--eeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCC
Q 006909          274 LAWSNSNYLLSCSMDKTVRMWQVGCNQ--CLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR  350 (626)
Q Consensus       274 l~~s~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  350 (626)
                      +...|++..+++.....|++||++++.  ++.+|. |...|+++.|.. +|+.+++|+.||+++|||++.-.+.+...+.
T Consensus        46 LeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~  124 (311)
T KOG0315|consen   46 LEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN  124 (311)
T ss_pred             EEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCC
Confidence            999999854444455689999998765  466674 889999999999 9999999999999999999998888888999


Q ss_pred             CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 006909          351 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  430 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~  430 (626)
                      .+|+++..+|+-..|++|..+|.|++||+.......+.+..      ...+|.++...||| .+++++...|..++|++-
T Consensus       125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe------~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE------DDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC------CCcceeeEEEcCCC-cEEEEecCCccEEEEEcc
Confidence            99999999999999999999999999999887654332222      23789999999998 689999999999999954


Q ss_pred             c------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCC
Q 006909          431 D------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  504 (626)
Q Consensus       431 ~------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~  504 (626)
                      .      .....+...|.+.+..+.+|||+++|+++|.|.+++||+.++. ..                 +..       
T Consensus       198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~k-----------------le~-------  252 (311)
T KOG0315|consen  198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FK-----------------LEL-------  252 (311)
T ss_pred             CCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-ee-----------------eEE-------
Confidence            2      2222233448899999999999999999999999999999873 00                 000       


Q ss_pred             CCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          505 IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       505 ~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                                                 .+.++.+.+-..+||.||+||++++. |+..++|+++.+
T Consensus       253 ---------------------------~l~gh~rWvWdc~FS~dg~YlvTass-d~~~rlW~~~~~  290 (311)
T KOG0315|consen  253 ---------------------------VLTGHQRWVWDCAFSADGEYLVTASS-DHTARLWDLSAG  290 (311)
T ss_pred             ---------------------------EeecCCceEEeeeeccCccEEEecCC-CCceeecccccC
Confidence                                       02334455666789999999999998 799999999988

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.4e-32  Score=263.57  Aligned_cols=269  Identities=23%  Similarity=0.361  Sum_probs=226.1

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      ...|++++|+.+|..||+|+.||.++||+...                                              ..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----------------------------------------------~l  268 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG----------------------------------------------NL  268 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc----------------------------------------------hh
Confidence            35799999999999999999999999999874                                              45


Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                      +.++..|.++|.++.|+..| +|++++.|+++.+||..++...+.|. |..+-..+.|-  +...|++.+.|+.|+++-+
T Consensus       269 ~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv  346 (524)
T KOG0273|consen  269 ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKV  346 (524)
T ss_pred             hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEe
Confidence            67888999999999999887 99999999999999999999999997 55555788997  5778999999999999998


Q ss_pred             CCCe-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC-----
Q 006909          339 CEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES-----  412 (626)
Q Consensus       339 ~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~-----  412 (626)
                      .... ...+.+|.+.|.++.|+|.|.+|++++.|++++||.........       ....|...|..+.|+|.|+     
T Consensus       347 ~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~-------~l~~Hskei~t~~wsp~g~v~~n~  419 (524)
T KOG0273|consen  347 GEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH-------DLQAHSKEIYTIKWSPTGPVTSNP  419 (524)
T ss_pred             cCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh-------hhhhhccceeeEeecCCCCccCCC
Confidence            7655 44678899999999999999999999999999999976554321       1334557899999998752     


Q ss_pred             ---cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909          413 ---QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  489 (626)
Q Consensus       413 ---~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  489 (626)
                         ..+++++.|++|++||+..++.......|..+|.+++|+|+|+|+|+|+.||.|.+|+++++.......        
T Consensus       420 ~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~--------  491 (524)
T KOG0273|consen  420 NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ--------  491 (524)
T ss_pred             cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec--------
Confidence               589999999999999999888888777799999999999999999999999999999999874332222        


Q ss_pred             eeccCCcEEEEecCCCCcccccccCC
Q 006909          490 HFFSEGVSVAVQWPGIGTEQKSLCSS  515 (626)
Q Consensus       490 ~~~~~g~~~av~~s~~~~~l~~~~~~  515 (626)
                         .++.+.-+.|+..|..+....++
T Consensus       492 ---~~~~Ifel~Wn~~G~kl~~~~sd  514 (524)
T KOG0273|consen  492 ---GTGGIFELCWNAAGDKLGACASD  514 (524)
T ss_pred             ---CCCeEEEEEEcCCCCEEEEEecC
Confidence               23445666777666666554444

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-33  Score=286.68  Aligned_cols=276  Identities=24%  Similarity=0.343  Sum_probs=220.0

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      ++..-...++|..|++|+.+||.|-.|..|++|.+...+.....-........           .......   -+..-.
T Consensus       373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d-----------~~sad~~---~~~~D~  438 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNID-----------TESADVD---VDMLDD  438 (707)
T ss_pred             EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccc-----------ccccchh---hhhccc
Confidence            33334556999999999999999999999999999863221110000000000           0000000   000011


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                      .+.....++.||.++|..+.|+|+. +|++||.|++||+|.+.+..++..+. |..+|+.++|+| .|-+||||+.|++.
T Consensus       439 ~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tA  517 (707)
T KOG0263|consen  439 DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTA  517 (707)
T ss_pred             cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCcee
Confidence            1234456699999999999999987 99999999999999999999988884 999999999999 99999999999999


Q ss_pred             EEEeCCCCeE-EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          334 RIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       334 ~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      ++|....... ..+.+|-..|.|+.|+|++.|+++|+.|.++++||+.++.....       ..+|.++|++++|+|+| 
T Consensus       518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi-------F~GH~~~V~al~~Sp~G-  589 (707)
T KOG0263|consen  518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI-------FTGHKGPVTALAFSPCG-  589 (707)
T ss_pred             eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE-------ecCCCCceEEEEEcCCC-
Confidence            9999876554 44778999999999999999999999999999999998876322       23456999999999998 


Q ss_pred             cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          413 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+|++|+.|+.|.+||+...........|.+.|.++.|+.+|..||+|+.|++|++||+...
T Consensus       590 r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  590 RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            89999999999999998865555555557999999999999999999999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-31  Score=269.62  Aligned_cols=402  Identities=17%  Similarity=0.217  Sum_probs=296.5

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC----------CcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS----------VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      .+...|++++.||+|.+|++..+.|...+-++..          ....++.|+|++.+.+.+....+.++......-. .
T Consensus        53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~-~  131 (893)
T KOG0291|consen   53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKN-E  131 (893)
T ss_pred             ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhc-c
Confidence            5677788889999888888888888776666543          2345677888877766655555554443322211 0


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEE
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYF  324 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l  324 (626)
                      ++      .....+++.+|...|.++.|+.|. +|++||.|.++++|+++..+-+..+   +|.++|.++-|.. +...+
T Consensus       132 ~~------pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~-~~~~l  204 (893)
T KOG0291|consen  132 FN------PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA-NSLDL  204 (893)
T ss_pred             cC------cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc-CcceE
Confidence            00      123356778999999999999886 8899999999999999876664433   5999999999998 88899


Q ss_pred             EEEeCCCcEEEEeCCC------------------------Ce-----E------EEeccCCCCeEEEEEeeCCCEEEEEe
Q 006909          325 ISGSIDGKVRIWGVCE------------------------KR-----V------VDWADVRDVISAICYIPDGKGFIVGS  369 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~------------------------~~-----~------~~~~~~~~~i~~i~~sp~g~~l~~g~  369 (626)
                      ++.+.||.+.+|....                        .+     .      ..+......+++.+|++.-+.|++|-
T Consensus       205 ~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF  284 (893)
T KOG0291|consen  205 YTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGF  284 (893)
T ss_pred             EEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEe
Confidence            9999999999997651                        11     0      00112236799999999999999999


Q ss_pred             cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEeCCcceeeeeecCCCCCeEEE
Q 006909          370 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGLPKSGSQMSA  448 (626)
Q Consensus       370 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~  448 (626)
                      ..|...+|.+....... .+...      ..+|..++|+..| .+|+.|+.. |.+-||+.......++..+|...++++
T Consensus       285 ssG~f~LyelP~f~lih-~LSis------~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l  356 (893)
T KOG0291|consen  285 SSGEFGLYELPDFNLIH-SLSIS------DQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSL  356 (893)
T ss_pred             cCCeeEEEecCCceEEE-Eeecc------cceeeEEEecccC-CEEEEcCCccceEEEEEeeccceeeeccccccceeeE
Confidence            99999999998776533 23322      2689999999987 688888765 899999988777777777899999999


Q ss_pred             EEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec-cCCcEEEEecCCCCcccccccCCCccccCcccccc
Q 006909          449 SFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL  527 (626)
Q Consensus       449 ~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~  527 (626)
                      +++|||++|++|++||.|+|||...+.           ....|. |...+.++.|+..|..+.+.+-|   +.++.|+..
T Consensus       357 ~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----------C~vTFteHts~Vt~v~f~~~g~~llssSLD---GtVRAwDlk  422 (893)
T KOG0291|consen  357 AYSPDGQLIATGAEDGKVKVWNTQSGF-----------CFVTFTEHTSGVTAVQFTARGNVLLSSSLD---GTVRAWDLK  422 (893)
T ss_pred             EECCCCcEEEeccCCCcEEEEeccCce-----------EEEEeccCCCceEEEEEEecCCEEEEeecC---CeEEeeeec
Confidence            999999999999999999999998861           112232 33445577777777777665554   345566653


Q ss_pred             CCCC--cc-cCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccc--ccccccc
Q 006909          528 ETAP--WI-RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWG  602 (626)
Q Consensus       528 ~~~~--~~-~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg  602 (626)
                      ....  .+ .+.......++.-|.|..+..++...-.|++|++++|           ++......|.+.+.  ++++ +|
T Consensus       423 RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-----------qllDiLsGHEgPVs~l~f~~-~~  490 (893)
T KOG0291|consen  423 RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-----------QLLDILSGHEGPVSGLSFSP-DG  490 (893)
T ss_pred             ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-----------eeeehhcCCCCcceeeEEcc-cc
Confidence            2211  11 1112224556777779988777775568999999999           55555666777665  3556 79


Q ss_pred             eEEEEecCCceEeeeeecCc
Q 006909          603 LVIVTAGCDGMIKTFHNYGL  622 (626)
Q Consensus       603 ~~ivt~g~Dg~Irvw~~~g~  622 (626)
                      ..|||||||.|||+|++|+-
T Consensus       491 ~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  491 SLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             CeEEeccccceEEEEEeecc
Confidence            99999999999999999984

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-32  Score=240.26  Aligned_cols=244  Identities=27%  Similarity=0.512  Sum_probs=214.5

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .+.|..|+++|.++.|+-||+|.+|++.|.+|++|+...                                         
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-----------------------------------------   48 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-----------------------------------------   48 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc-----------------------------------------
Confidence            456789999999999999999999999999999999876                                         


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                          +..++++.+|...|.+++.+.|+ .+++|+.|+.|.+||+.+|+.++.+. |...|+.++|+. +...+++|+.|.
T Consensus        49 ----g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~  123 (307)
T KOG0316|consen   49 ----GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDS  123 (307)
T ss_pred             ----cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccc
Confidence                56689999999999999999877 99999999999999999999999995 999999999998 889999999999


Q ss_pred             cEEEEeCCCCe--EE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          332 KVRIWGVCEKR--VV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       332 ~v~iwd~~~~~--~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      ++++||.++..  ++ .+....+.|.++...  +..+++|+.||+++.||++.+......         .+.+|+++.|+
T Consensus       124 s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy---------~g~pit~vs~s  192 (307)
T KOG0316|consen  124 SVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY---------FGHPITSVSFS  192 (307)
T ss_pred             eeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh---------cCCcceeEEec
Confidence            99999998754  23 344567788888765  568999999999999999988764321         23799999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          409 RDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      +++ +..++++.|+++++.|-.  +....++++.+...-..++++....++++|++||.|++||+.+..
T Consensus       193 ~d~-nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  193 KDG-NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             CCC-CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence            998 799999999999999955  566778887777777888999999999999999999999998863

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.7e-31  Score=258.04  Aligned_cols=339  Identities=18%  Similarity=0.286  Sum_probs=258.6

Q ss_pred             ccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909          168 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  247 (626)
Q Consensus       168 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (626)
                      -+++....+++.|..-|+|+.|+|||.++||++.||+|.|||=.+++.                                
T Consensus       177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~--------------------------------  224 (603)
T KOG0318|consen  177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK--------------------------------  224 (603)
T ss_pred             CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE--------------------------------
Confidence            356777788899999999999999999999999999999999877433                                


Q ss_pred             ecCCccccccCCCceeec---cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe-------------------
Q 006909          248 VIPDEVFQIEESPLQELH---GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-------------------  304 (626)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~-------------------  304 (626)
                                   +..+.   +|.+.|.+++|+||+ .++|++.|++++|||+.++.++++                   
T Consensus       225 -------------vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd  291 (603)
T KOG0318|consen  225 -------------VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD  291 (603)
T ss_pred             -------------EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence                         33444   899999999999998 999999999999999977654432                   


Q ss_pred             -------------------------ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe--ccCCCCeEEEE
Q 006909          305 -------------------------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--ADVRDVISAIC  357 (626)
Q Consensus       305 -------------------------~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~i~~i~  357 (626)
                                               .+|...|+++..+| ++.+|++|+.||.|.-|+..++..-.+  ..|...|.+++
T Consensus       292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~  370 (603)
T KOG0318|consen  292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA  370 (603)
T ss_pred             eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence                                     13788899999999 999999999999999999998887665  67889999998


Q ss_pred             EeeCCCEEEEEecCCcEEEEEcCCCceeeeE-Ee---------------------------eccc----cccCCCCeEEE
Q 006909          358 YIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VD---------------------------FHDR----KKTSGNKITGI  405 (626)
Q Consensus       358 ~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~-~~---------------------------~~~~----~~~~~~~i~~l  405 (626)
                      .+..+ .+++.+.|.++++.++......... ..                           +...    .........++
T Consensus       371 ~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v  449 (603)
T KOG0318|consen  371 ASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV  449 (603)
T ss_pred             ecCCC-cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence            87655 5677778889999877432211100 00                           0000    00112345688


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  483 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  483 (626)
                      +++|++ ..+++|+.|+.|+||.+..  .........|.++|+.++||||+.|||++...+.+.+||+.+...       
T Consensus       450 Av~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-------  521 (603)
T KOG0318|consen  450 AVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-------  521 (603)
T ss_pred             EEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-------
Confidence            999997 7999999999999999763  233334566999999999999999999999999999999998632       


Q ss_pred             CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCC---cccCCCcccCCccccCCCCcccccCCCCC
Q 006909          484 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAE  560 (626)
Q Consensus       484 ~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~s~~~~d~  560 (626)
                       ......|| ..++.+++|+|+...++.   ++++-++.+|.+-.+..   -...|...+++++|-.+.. +++++. |-
T Consensus       522 -~~~~w~FH-takI~~~aWsP~n~~vAT---GSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~t-vvSsG~-Da  594 (603)
T KOG0318|consen  522 -KTNRWAFH-TAKINCVAWSPNNKLVAT---GSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDEST-VVSSGQ-DA  594 (603)
T ss_pred             -ecceeeee-eeeEEEEEeCCCceEEEe---ccccceEEEEEccChhhheEeccccccCceeEEEecCce-EEeccC-cc
Confidence             11222344 477889999999987664   44455577777744322   2233444488888887766 666666 78


Q ss_pred             CCCCCCcc
Q 006909          561 KLPLWDVT  568 (626)
Q Consensus       561 ~i~vwd~~  568 (626)
                      .|++|+++
T Consensus       595 ~iK~W~v~  602 (603)
T KOG0318|consen  595 NIKVWNVT  602 (603)
T ss_pred             eeEEeccc
Confidence            99999874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8.6e-32  Score=250.73  Aligned_cols=325  Identities=16%  Similarity=0.230  Sum_probs=254.2

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      ..+|..|++.|.+++.+|+.+++||||.|-.-.||++.++                                        
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g----------------------------------------   96 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG----------------------------------------   96 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC----------------------------------------
Confidence            4567899999999999999999999999999999999884                                        


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                           .....+.+|...|+++.|+.+| +|+||+.+|.|+||+..++.....+. .-..+.-+.|+| .+.+|+.|+.||
T Consensus        97 -----e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DG  170 (399)
T KOG0296|consen   97 -----EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDG  170 (399)
T ss_pred             -----cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCC
Confidence                 3467888999999999999998 99999999999999999998887775 667888999999 999999999999


Q ss_pred             cEEEEeCCC-CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          332 KVRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       332 ~v~iwd~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      .+-+|.+.+ +.+..+.+|..++++-.|.|+|+.++++..||+|++|+..+...........      ....+++.++..
T Consensus       171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e------~~~~~~~~~~~~  244 (399)
T KOG0296|consen  171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE------GLELPCISLNLA  244 (399)
T ss_pred             cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc------cCcCCccccccc
Confidence            999999988 5566688999999999999999999999999999999999986543322111      256778888888


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeee--------cCCCC---CeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKG--------LPKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  479 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~--------~~~~~---~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~  479 (626)
                      + ..++.|+.++.+++-+........-.        ..+..   .|-.+.++..-++.|+|+-||+|.|||+....... 
T Consensus       245 ~-~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~-  322 (399)
T KOG0296|consen  245 G-STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH-  322 (399)
T ss_pred             c-ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe-
Confidence            6 68888999998888875433222211        11222   34455566667888999999999999998641110 


Q ss_pred             CccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCC
Q 006909          480 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPA  559 (626)
Q Consensus       480 ~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d  559 (626)
                             .|  -++++ ++.+.|-+                                            ..+|++++- +
T Consensus       323 -------~c--~he~~-V~~l~w~~--------------------------------------------t~~l~t~c~-~  347 (399)
T KOG0296|consen  323 -------IC--EHEDG-VTKLKWLN--------------------------------------------TDYLLTACA-N  347 (399)
T ss_pred             -------ec--cCCCc-eEEEEEcC--------------------------------------------cchheeecc-C
Confidence                   01  12222 23333333                                            234556665 6


Q ss_pred             CCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccccc--ccccceEEEEecCCceEeeeee
Q 006909          560 EKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAI--SATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       560 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                      ++|+.||..+|           ++...+..|..++..|  ++ +++++||+|.|++.+||..
T Consensus       348 g~v~~wDaRtG-----------~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  348 GKVRQWDARTG-----------QLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             ceEEeeecccc-----------ceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEec
Confidence            99999999999           5555566666666544  45 8999999999999999975

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.3e-32  Score=280.40  Aligned_cols=209  Identities=30%  Similarity=0.542  Sum_probs=189.5

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      .-...++|.||+++|..+.|+|+.++|+++++|++||+|.+.+                                     
T Consensus       440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-------------------------------------  482 (707)
T KOG0263|consen  440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-------------------------------------  482 (707)
T ss_pred             CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeeccc-------------------------------------
Confidence            3445667899999999999999999999999999999999987                                     


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                              ...+..+.||..+|.++.|+|-| +++|+|.|++.++|......+++.| +|.+.|.|+.|+| +.+|+++|
T Consensus       483 --------~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTG  553 (707)
T KOG0263|consen  483 --------WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATG  553 (707)
T ss_pred             --------ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccC
Confidence                    45577788999999999999999 8999999999999999999999988 5999999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          328 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      |.|.+||+||+.+|..++ +.+|.++|++++|+|+|++|++|+.||.|.+||+.++.....       ...|.+.|.++.
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~-------l~~Ht~ti~Sls  626 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ-------LKGHTGTIYSLS  626 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh-------hhcccCceeEEE
Confidence            999999999999887665 679999999999999999999999999999999998876433       333458999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCCcc
Q 006909          407 FSRDESQRIMITSEDSKLRILDGVDV  432 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~~~  432 (626)
                      |+.+| ..|++++.|++|++||....
T Consensus       627 FS~dg-~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  627 FSRDG-NVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EecCC-CEEEecCCCCeEEEEEchhh
Confidence            99998 79999999999999997643

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9.9e-32  Score=257.85  Aligned_cols=332  Identities=17%  Similarity=0.270  Sum_probs=250.8

Q ss_pred             cccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          175 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      +.+. |+.+|.+.+|+|-.. .||+|+.|-+.++|++......+.                        ...        
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~------------------------~q~--------  219 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGS------------------------TQL--------  219 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccc------------------------hhh--------
Confidence            4444 999999999999776 999999999999999874100000                        000        


Q ss_pred             ccccCCCceeec----cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909          254 FQIEESPLQELH----GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       254 ~~~~~~~~~~~~----~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                         ..+....+.    .....|++++|+.+| .|++|+.||.+++|+...+ .+.++ .|.++|.++.|+. .|++|+++
T Consensus       220 ---~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~tl~~HkgPI~slKWnk-~G~yilS~  294 (524)
T KOG0273|consen  220 ---VLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LISTLGQHKGPIFSLKWNK-KGTYILSG  294 (524)
T ss_pred             ---hhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhhhhhccCCceEEEEEcC-CCCEEEec
Confidence               000000011    124689999999988 9999999999999998754 44555 5999999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEEecc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          328 SIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +.|+++.+||..++....... |..+...+.|-.+ ..+++.+.||.|++|.+........       ..+|.+.|.++.
T Consensus       295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t-------~~GH~g~V~alk  366 (524)
T KOG0273|consen  295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKT-------FIGHHGEVNALK  366 (524)
T ss_pred             cCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCccee-------eecccCceEEEE
Confidence            999999999999988776544 4444477888654 4799999999999999977655332       222458999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC---------EEEEEeCCccEEEEECCCCCCC
Q 006909          407 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK---------HIISIGDDCRVYVWNYDELCFP  477 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~---------~l~s~s~dg~I~iwd~~~~~~~  477 (626)
                      |.|.| .+|++++.|++++||...+....-..+.|...|..+.|+|+|.         .|++++.|++|++||+..+   
T Consensus       367 ~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---  442 (524)
T KOG0273|consen  367 WNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---  442 (524)
T ss_pred             ECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---
Confidence            99998 7999999999999999775544444455888999999999764         6899999999999999874   


Q ss_pred             CCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCC
Q 006909          478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW  557 (626)
Q Consensus       478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~  557 (626)
                                        ..+++                                +..|..+|.+++|||+|+++++++.
T Consensus       443 ------------------v~i~~--------------------------------f~kH~~pVysvafS~~g~ylAsGs~  472 (524)
T KOG0273|consen  443 ------------------VPIHT--------------------------------LMKHQEPVYSVAFSPNGRYLASGSL  472 (524)
T ss_pred             ------------------ceeEe--------------------------------eccCCCceEEEEecCCCcEEEecCC
Confidence                              12121                                2345667899999999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCc-cccccccccceEEEEecCCceEeeeee
Q 006909          558 PAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVD-DVRAISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       558 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                       ++.|.+|+++++           ++.+......+ ....++. +|.+|..+-.||.+++-+.
T Consensus       473 -dg~V~iws~~~~-----------~l~~s~~~~~~Ifel~Wn~-~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  473 -DGCVHIWSTKTG-----------KLVKSYQGTGGIFELCWNA-AGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             -CCeeEeccccch-----------heeEeecCCCeEEEEEEcC-CCCEEEEEecCCCceEEEe
Confidence             799999999998           22222222211 1123344 6888888888999988653

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-31  Score=248.41  Aligned_cols=299  Identities=17%  Similarity=0.300  Sum_probs=241.0

Q ss_pred             cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      .+..+.+.+++|.+.|.|+++.|...+++||+.|++|+|||+.+                                    
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat------------------------------------  182 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT------------------------------------  182 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc------------------------------------
Confidence            45567889999999999999999999999999999999999998                                    


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEE
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s  326 (626)
                               ++...++.||...|..+++++-. ++++++.|+.|+.||++.++.++.+ +|-..|.|++.+| .-+.|++
T Consensus       183 ---------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t  252 (460)
T KOG0285|consen  183 ---------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVT  252 (460)
T ss_pred             ---------CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEe
Confidence                     44567889999999999999876 9999999999999999999999887 5999999999999 8899999


Q ss_pred             EeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          327 GSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      |+.|.++++||+++...+ .+.+|..+|..+.+.|-...+++|+.|++|++||+..++.... ..      .|...+.++
T Consensus       253 ~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t-lt------~hkksvral  325 (460)
T KOG0285|consen  253 GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT-LT------HHKKSVRAL  325 (460)
T ss_pred             cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe-ee------cccceeeEE
Confidence            999999999999997655 4778999999999999888999999999999999998876433 22      223789999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCc
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV  485 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  485 (626)
                      +.+|.. ..+++++.| .|+-|++...........|.+.+++++...|| ++++|+++|.|.+||..++......+....
T Consensus       326 ~lhP~e-~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vq  402 (460)
T KOG0285|consen  326 CLHPKE-NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ  402 (460)
T ss_pred             ecCCch-hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccccccc
Confidence            999995 566666654 68899987655444455588899999987765 788999999999999998833222211100


Q ss_pred             cceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccC
Q 006909          486 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE  528 (626)
Q Consensus       486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~  528 (626)
                      ..  ....+.-+++.+|...|..|.....+   +.+.+|...+
T Consensus       403 pG--Sl~sEagI~as~fDktg~rlit~ead---KtIk~~keDe  440 (460)
T KOG0285|consen  403 PG--SLESEAGIFASCFDKTGSRLITGEAD---KTIKMYKEDE  440 (460)
T ss_pred             CC--ccccccceeEEeecccCceEEeccCC---cceEEEeccc
Confidence            00  11223446788888888888765554   4566666633

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.4e-32  Score=259.12  Aligned_cols=250  Identities=19%  Similarity=0.348  Sum_probs=212.8

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      +.....+++|..+|++|.|+++|.++++|..+|.|++|+..-                                      
T Consensus       128 fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--------------------------------------  169 (464)
T KOG0284|consen  128 FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--------------------------------------  169 (464)
T ss_pred             eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--------------------------------------
Confidence            333445689999999999999999999999999999998763                                      


Q ss_pred             CccccccCCCceeeccCc-cceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909          251 DEVFQIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                              ..++.+.+|. ..|++++|+|+. .+++||.||+|+|||....+....+ +|.-.|.+++|+| ...++++|
T Consensus       170 --------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasg  240 (464)
T KOG0284|consen  170 --------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASG  240 (464)
T ss_pred             --------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEc
Confidence                    2245555554 999999999865 9999999999999999877776666 5888999999999 88999999


Q ss_pred             eCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          328 SIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +.|..|++||.+++.++ .+..|+..|..+.|+|++++|++++.|..+++||+++.+...       ..++|...++++.
T Consensus       241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~-------~~r~Hkkdv~~~~  313 (464)
T KOG0284|consen  241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF-------TYRGHKKDVTSLT  313 (464)
T ss_pred             cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH-------Hhhcchhhheeec
Confidence            99999999999998876 477899999999999999999999999999999999544322       1344568999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          407 FSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |+|-...+|.+|+.||.|..|.+. +.-.......|...|.+++|+|-|..|++|+.|.++++|.....
T Consensus       314 WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  314 WHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             cccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            999888899999999999999976 22222223558899999999999999999999999999987653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.1e-31  Score=264.47  Aligned_cols=401  Identities=18%  Similarity=0.224  Sum_probs=280.1

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeee-----------ecCCCC-CccCCCCCeeeecC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS-----------FTDDGG-FGSNAKEGKIKFGK  239 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~  239 (626)
                      ...-++.||+.+|+++.|+..|..||+||.|+.|.+||+..-......           |..+.. .+....++.+    
T Consensus        98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~i----  173 (888)
T KOG0306|consen   98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMI----  173 (888)
T ss_pred             ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceE----
Confidence            344567899999999999999999999999999999999753221111           111111 1112222222    


Q ss_pred             CCCCCceeecCCccccccCCCceeec-cCccceEEEEEcCCCeEEEEeCCCcEEEeccCC----------------C---
Q 006909          240 KKSSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC----------------N---  299 (626)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~----------------~---  299 (626)
                                  +.|+++.+...... .|.+.|..+++.+ ..+++++.|+.+++|++..                |   
T Consensus       174 ------------K~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~  240 (888)
T KOG0306|consen  174 ------------KFWDLETQHCFETHVDHRGEIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFI  240 (888)
T ss_pred             ------------EEEecccceeeeEEecccceEEEEEEec-ceEEEEecCCceEEEEeecccccccccccceeeccceee
Confidence                        34555554444443 6788899999887 6788888888999998710                0   


Q ss_pred             -----eeeEe----------------------------------------------------------------------
Q 006909          300 -----QCLNV----------------------------------------------------------------------  304 (626)
Q Consensus       300 -----~~~~~----------------------------------------------------------------------  304 (626)
                           +.+..                                                                      
T Consensus       241 rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~  320 (888)
T KOG0306|consen  241 RQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTS  320 (888)
T ss_pred             eccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheech
Confidence                 00000                                                                      


Q ss_pred             -------------------------------------------------ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          305 -------------------------------------------------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       305 -------------------------------------------------~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                                                                       .+|...|.+++++. +...+++|+ .+.+++
T Consensus       321 ~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~~~~~Sga-~~Siki  398 (888)
T KOG0306|consen  321 AKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DSILLASGA-GESIKI  398 (888)
T ss_pred             hheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-CceeeeecC-CCcEEE
Confidence                                                             01444566666665 444444443 578889


Q ss_pred             EeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          336 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       336 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      |+..+.+++...... .+.+..|.|.++++++|...|.+.+||+...... +.      .+.|.+.|.+++.+||+ ..+
T Consensus       399 Wn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~-Et------i~AHdgaIWsi~~~pD~-~g~  469 (888)
T KOG0306|consen  399 WNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLV-ET------IRAHDGAIWSISLSPDN-KGF  469 (888)
T ss_pred             EEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhh-hh------hhccccceeeeeecCCC-Cce
Confidence            988888777655544 7888889999999999999999999998776542 22      33567999999999998 799


Q ss_pred             EEEeCCCcEEEEeCCc-------ceeeeee-----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC-CCCCcc
Q 006909          416 MITSEDSKLRILDGVD-------VIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF-PSSKQK  482 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~-------~~~~~~~-----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~~  482 (626)
                      ++|+.|.+|++||..-       ....+..     ..-...|.++.+||||++|+.+=-|++++||-+++... ......
T Consensus       470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH  549 (888)
T KOG0306|consen  470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH  549 (888)
T ss_pred             EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc
Confidence            9999999999999431       1111111     12356799999999999999999999999999998733 333444


Q ss_pred             CCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCC
Q 006909          483 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKL  562 (626)
Q Consensus       483 ~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i  562 (626)
                      +-++.|+.++|++..++.+-.+-...+|.+.-+.            .+.-+..|.+.|..+.|-|+.....+++. |+++
T Consensus       550 kLPV~smDIS~DSklivTgSADKnVKiWGLdFGD------------CHKS~fAHdDSvm~V~F~P~~~~FFt~gK-D~kv  616 (888)
T KOG0306|consen  550 KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD------------CHKSFFAHDDSVMSVQFLPKTHLFFTCGK-DGKV  616 (888)
T ss_pred             ccceeEEeccCCcCeEEeccCCCceEEeccccch------------hhhhhhcccCceeEEEEcccceeEEEecC-cceE
Confidence            5566677788887776666444455555544332            23345678888999999999998999998 8999


Q ss_pred             CCCCcccCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeecCcccc
Q 006909          563 PLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYGLPIR  625 (626)
Q Consensus       563 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~g~p~~  625 (626)
                      +-||...-           ...+....|...+  .++++ +|.++||+|.|.+||+|...--|+.
T Consensus       617 KqWDg~kF-----------e~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~tde~~~  669 (888)
T KOG0306|consen  617 KQWDGEKF-----------EEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWERTDEILI  669 (888)
T ss_pred             Eeechhhh-----------hhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeeeccCccee
Confidence            99998776           2233333333333  35556 7999999999999999987765553

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.3e-30  Score=292.12  Aligned_cols=303  Identities=16%  Similarity=0.303  Sum_probs=230.4

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      .+.+|.+.|++++|+|+|++||||+.|++|+||++.......       .                              
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~-------~------------------------------  520 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG-------R------------------------------  520 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc-------c------------------------------
Confidence            455699999999999999999999999999999976411000       0                              


Q ss_pred             ccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                      ....+...+. +...|.+++|++.  .+|++++.||+|++||+.+++.+..+ .|...|++++|+|.++.+|++|+.|++
T Consensus       521 ~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~  599 (793)
T PLN00181        521 DIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS  599 (793)
T ss_pred             ccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE
Confidence            0011222333 3467999999874  38999999999999999999888877 489999999999767899999999999


Q ss_pred             EEEEeCCCCeEEEeccCCCCeEEEEEe-eCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          333 VRIWGVCEKRVVDWADVRDVISAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~~~~~i~~i~~s-p~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      |++||++++.......+...+.++.|+ ++|.+|++|+.||.|++||++........+      ..|...|+++.|.+ +
T Consensus       600 v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------~~h~~~V~~v~f~~-~  672 (793)
T PLN00181        600 VKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------IGHSKTVSYVRFVD-S  672 (793)
T ss_pred             EEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------cCCCCCEEEEEEeC-C
Confidence            999999988777655666789999995 579999999999999999998765332222      23457899999974 3


Q ss_pred             CcEEEEEeCCCcEEEEeCCc--------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909          412 SQRIMITSEDSKLRILDGVD--------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  483 (626)
Q Consensus       412 ~~~l~~~s~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  483 (626)
                       .++++++.|++|++||+..        ....+.  .|...+..++|+|++++|++|+.|+.|++|+.......      
T Consensus       673 -~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~------  743 (793)
T PLN00181        673 -STLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV------  743 (793)
T ss_pred             -CEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce------
Confidence             5899999999999999763        233333  47788899999999999999999999999997653100      


Q ss_pred             CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCC
Q 006909          484 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP  563 (626)
Q Consensus       484 ~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~  563 (626)
                        . ...+...+..                              ... ....+..++.+++|+|+|.++++++. ++.|+
T Consensus       744 --~-s~~~~~~~~~------------------------------~~~-~~~~~~~~V~~v~ws~~~~~lva~~~-dG~I~  788 (793)
T PLN00181        744 --L-SYKFKTIDPV------------------------------SGL-EVDDASQFISSVCWRGQSSTLVAANS-TGNIK  788 (793)
T ss_pred             --E-EEecccCCcc------------------------------ccc-ccCCCCcEEEEEEEcCCCCeEEEecC-CCcEE
Confidence              0 0000000000                              000 01234457889999999999999888 79999


Q ss_pred             CCCc
Q 006909          564 LWDV  567 (626)
Q Consensus       564 vwd~  567 (626)
                      +|++
T Consensus       789 i~~~  792 (793)
T PLN00181        789 ILEM  792 (793)
T ss_pred             EEec
Confidence            9975

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-31  Score=269.46  Aligned_cols=409  Identities=15%  Similarity=0.218  Sum_probs=289.3

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcc------------eeeeecCCCCCcc-CCCCCeeeecCCCCCCc
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA------------SCKSFTDDGGFGS-NAKEGKIKFGKKKSSHV  245 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  245 (626)
                      .-...|++++.+||+++|++++..+.+++|++.+++.            ....|.+.+.+.+ ...++.++.|...    
T Consensus        60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~----  135 (775)
T KOG0319|consen   60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIK----  135 (775)
T ss_pred             cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEee----
Confidence            3456799999999999999999999999999988643            2334555554332 2334444443332    


Q ss_pred             eeecCCccccccCCCceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCCee-eEee-cCCCCeEEEEEeeCC
Q 006909          246 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC-LNVF-DHHNYVTCVQFNPID  320 (626)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~p~~  320 (626)
                                 .+...+.|.||.+.|..+.|+|+-   .|++|..|+++++||+..... +.+. .|.+.|++++|.+ +
T Consensus       136 -----------~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d  203 (775)
T KOG0319|consen  136 -----------NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-D  203 (775)
T ss_pred             -----------CCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-C
Confidence                       245578999999999999999874   689999999999999985544 5554 4999999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC-----CCEEEEEecCCcEEEEEcCCCceeeeEEee----
Q 006909          321 DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD-----GKGFIVGSITGTCHFYKASGNDLKLEKVDF----  391 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~-----g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~----  391 (626)
                      +..+++++.|..+.+||+.+.+.....+....+-++.+-++     |.++++.+.+|.+++||..+......+-..    
T Consensus       204 ~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e  283 (775)
T KOG0319|consen  204 SLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE  283 (775)
T ss_pred             CceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh
Confidence            99999999999999999987777666777777888888777     678999999999999987653322110000    


Q ss_pred             --------------------------------cc------------------------------------------cccc
Q 006909          392 --------------------------------HD------------------------------------------RKKT  397 (626)
Q Consensus       392 --------------------------------~~------------------------------------------~~~~  397 (626)
                                                      ..                                          -..+
T Consensus       284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G  363 (775)
T KOG0319|consen  284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG  363 (775)
T ss_pred             hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC
Confidence                                            00                                          0122


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECC
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~  472 (626)
                      |...|.++....+| .+|++++.|.++++|.+.+    ....-.+.+|...|.+++++..+ .+++++|.|++|++|++.
T Consensus       364 H~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~  442 (775)
T KOG0319|consen  364 HTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP  442 (775)
T ss_pred             chhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence            45566666644454 6999999999999997632    22222345588999999997655 689999999999999998


Q ss_pred             CCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC--CCcccCCCcccCCccccCCCC
Q 006909          473 ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET--APWIRDSERFSLGSWFSNDGP  550 (626)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~~~~s~dg~  550 (626)
                      ....... ............++..+.+++.+|+...++..+.   ++..++|..-..  .-.+.+|.+-+..+.|+|..+
T Consensus       443 ~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq---DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq  518 (775)
T KOG0319|consen  443 KSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ---DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ  518 (775)
T ss_pred             Ccccccc-cceehhhHHHHhhcccccceEecCCCceEEeccc---ccceeeecccCceEEEEeeCCccceEEEEeccccc
Confidence            7211100 0110001111223444455555666555554333   344566665322  235788889999999999999


Q ss_pred             cccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccc-cccceEEEEecCCceEeeeeec
Q 006909          551 CRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAIS-ATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       551 ~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                      .+++++. |.+|+||.+.+.           .+...+..|.+-+...+ -.+|..|+||+.||.|++|++.
T Consensus       519 ~laT~Sg-D~TvKIW~is~f-----------SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  519 LLATCSG-DKTVKIWSISTF-----------SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             eeEeccC-CceEEEEEeccc-----------eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            9999998 899999999998           33344444544443222 1289999999999999999964

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=5e-30  Score=269.24  Aligned_cols=252  Identities=34%  Similarity=0.558  Sum_probs=209.8

Q ss_pred             ccccccc-cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          174 SQEIQAH-KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       174 ~~~l~~H-~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      .+.+.+| ...|.++.|+|+|++|++++.|+.+++|+......                                     
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------------------  193 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------------------  193 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------------------
Confidence            5555555 88999999999999999999999999999965210                                     


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEecc-CCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~-~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                            ...+.+.+|...|++++|+|++ ++++++.|++|+|||+ ..+.+++++ +|...|++++|+| .++++++|+.
T Consensus       194 ------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~  266 (456)
T KOG0266|consen  194 ------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSD  266 (456)
T ss_pred             ------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecC
Confidence                  1355668999999999999998 9999999999999999 556888888 5999999999999 8899999999


Q ss_pred             CCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee-eeEEeeccccccCCCCeEEEEE
Q 006909          330 DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       330 dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~  407 (626)
                      |++|+|||++++++. .+..|...|++++|++++++|++++.|+.|++||+.++... ...+...   .... ++++++|
T Consensus       267 D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~---~~~~-~~~~~~f  342 (456)
T KOG0266|consen  267 DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA---ENSA-PVTSVQF  342 (456)
T ss_pred             CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCC---CCCC-ceeEEEE
Confidence            999999999997765 47789999999999999999999999999999999988743 1111111   1112 6999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCcce--eeeeecCCC-CCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          408 SRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~-~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +|++ .++++++.|+.+++||+....  ..+.++... ..+.+...++.+.++++|+.|+.|++|++.++
T Consensus       343 sp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~  411 (456)
T KOG0266|consen  343 SPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG  411 (456)
T ss_pred             CCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence            9998 799999999999999988543  444443222 13445556789999999999999999999976

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=1.1e-29  Score=227.81  Aligned_cols=274  Identities=23%  Similarity=0.427  Sum_probs=213.4

Q ss_pred             cccccccccccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc-c--------------eeeeecCCCCCccCCC-CC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVA-A--------------SCKSFTDDGGFGSNAK-EG  233 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~-~--------------~~~~~~~~~~~~~~~~-~~  233 (626)
                      +...+.+++|++.|+.++|+|- |..|||||.|+.|+||+...+. .              ...+++|.+.+++.++ +.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            4456788999999999999998 8899999999999999998422 2              2334555555433322 22


Q ss_pred             eeeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC---eeeEee-cCC
Q 006909          234 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVF-DHH  308 (626)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~---~~~~~~-~~~  308 (626)
                      ...++.....             +.+.+.++.||...|.+++|+++| +|++|+.|+.|-||.+..+   .+...+ .|.
T Consensus        84 t~~Iw~k~~~-------------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht  150 (312)
T KOG0645|consen   84 TVVIWKKEDG-------------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT  150 (312)
T ss_pred             eEEEeecCCC-------------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence            2233222211             245688999999999999999988 9999999999999998744   455555 499


Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909          309 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  384 (626)
Q Consensus       309 ~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~  384 (626)
                      ..|..+.|+| ...+|+++|.|++|++|.-..+.    +..+.+|...|.+++|+|.|..|++++.|++++||-....- 
T Consensus       151 qDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~-  228 (312)
T KOG0645|consen  151 QDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL-  228 (312)
T ss_pred             ccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc-
Confidence            9999999999 99999999999999999866322    45577888899999999999999999999999999865221 


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----cee--ee-eecCCCCCeEEEEEcCC-CCE
Q 006909          385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIH--KF-KGLPKSGSQMSASFTTT-GKH  456 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~--~~-~~~~~~~~v~~~~~sp~-g~~  456 (626)
                                ...|..++..+.|. +|  .|++++.|+.|++|.-..    +..  .. ....|...|+++.|.|. .+.
T Consensus       229 ----------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~  295 (312)
T KOG0645|consen  229 ----------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNR  295 (312)
T ss_pred             ----------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCc
Confidence                      11223789999999 54  899999999999997432    111  11 12347779999999995 789


Q ss_pred             EEEEeCCccEEEEECC
Q 006909          457 IISIGDDCRVYVWNYD  472 (626)
Q Consensus       457 l~s~s~dg~I~iwd~~  472 (626)
                      |+++++||.|++|.+.
T Consensus       296 L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  296 LASGGDDGIVNFWELE  311 (312)
T ss_pred             eeecCCCceEEEEEec
Confidence            9999999999999875

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.3e-30  Score=252.53  Aligned_cols=275  Identities=14%  Similarity=0.289  Sum_probs=224.3

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ..+++..|+..|.++.|+|....++++-.+|.|.|||.++                                        
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyet----------------------------------------   44 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYET----------------------------------------   44 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEeccc----------------------------------------
Confidence            3456677999999999999999999999999999999987                                        


Q ss_pred             cccccCCCceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                           ...++.+.-..-+|.+..|-+. +.+++|+.|..|+||+.++++.+..|. |.+.|.|++.+| ...+++++|.|
T Consensus        45 -----qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDD  118 (794)
T KOG0276|consen   45 -----QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDD  118 (794)
T ss_pred             -----ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCc
Confidence                 3345666667778888888865 599999999999999999999999996 999999999999 88899999999


Q ss_pred             CcEEEEeCCCCe--EEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909          331 GKVRIWGVCEKR--VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       331 g~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  407 (626)
                      -+|++||...+-  ...+.+|...|.+++|+| |.+.+++++-|++|++|.+........       ..+|...|.++.|
T Consensus       119 m~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT-------l~gHekGVN~Vdy  191 (794)
T KOG0276|consen  119 MTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT-------LEGHEKGVNCVDY  191 (794)
T ss_pred             cEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee-------eeccccCcceEEe
Confidence            999999998754  345789999999999999 678999999999999999987654322       2234589999999


Q ss_pred             cCCC-CcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC-ccC
Q 006909          408 SRDE-SQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKN  483 (626)
Q Consensus       408 s~~~-~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~  483 (626)
                      -+.| .-+|++|++|.+|+|||..+  +++++.+  |...|..++|+|.-..|++||+||+++||+-.+-...... ...
T Consensus       192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG--Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl  269 (794)
T KOG0276|consen  192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG--HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL  269 (794)
T ss_pred             ccCCCcceEEecCCCceEEEeecchHHHHHHhhc--ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC
Confidence            8765 34899999999999999764  5556655  8889999999999999999999999999998875322221 111


Q ss_pred             CccceeeeccCCcEEEEec
Q 006909          484 SVRSCEHFFSEGVSVAVQW  502 (626)
Q Consensus       484 ~~~~~~~~~~~g~~~av~~  502 (626)
                      ...-|++..+.+..+++++
T Consensus       270 eRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  270 ERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             ceEEEEeecCCCCeEEEec
Confidence            2233444444444455553

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.2e-31  Score=258.36  Aligned_cols=293  Identities=23%  Similarity=0.319  Sum_probs=232.2

Q ss_pred             cCCCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCC-CeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          257 EESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~-~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                      ....++++.||+..|+++.|.| .+ +|++++.|+.|+||++.. +.++++| +|..+|..++|++ ++..|++++.|+.
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF  281 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeeccee
Confidence            3456789999999999999999 55 889999999999999976 8999999 5999999999999 9999999999999


Q ss_pred             EEEEeCCCCeEEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          333 VRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      |++||+++|++.........++|+.|+|++ +.+++|+.|+.|+.||+++++...+       ...|-+.|..+.|-++|
T Consensus       282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe-------Yd~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE-------YDRHLGAILDITFVDEG  354 (503)
T ss_pred             eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH-------HHhhhhheeeeEEccCC
Confidence            999999999999999999999999999998 8999999999999999999886433       22344789999999998


Q ss_pred             CcEEEEEeCCCcEEEEeCCccee-eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909          412 SQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  490 (626)
Q Consensus       412 ~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  490 (626)
                       .+++++++|++++||+.+..+. .+....+.....++..+|++++++.-+.|+.|.++.+............       
T Consensus       355 -~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f-------  426 (503)
T KOG0282|consen  355 -RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF-------  426 (503)
T ss_pred             -ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhh-------
Confidence             7999999999999999774432 2223334456677889999999999999999999997653111111000       


Q ss_pred             eccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                         .|..                                      -..+...+.|||||++|++++. +|++.+||..+.
T Consensus       427 ---eGh~--------------------------------------vaGys~~v~fSpDG~~l~SGds-dG~v~~wdwkt~  464 (503)
T KOG0282|consen  427 ---EGHS--------------------------------------VAGYSCQVDFSPDGRTLCSGDS-DGKVNFWDWKTT  464 (503)
T ss_pred             ---ccee--------------------------------------ccCceeeEEEcCCCCeEEeecC-CccEEEeechhh
Confidence               1111                                      0123456779999999999988 899999999886


Q ss_pred             CCCCCCChhhHHHHhhhccCCcc--ccccccccceEEEEecCCceEeeee
Q 006909          571 SDGYCQDPQQQRLQQQCLNNVDD--VRAISATWGLVIVTAGCDGMIKTFH  618 (626)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~dg~~ivt~g~Dg~Irvw~  618 (626)
                                 ++......|.+.  .+.+.+---..+||+||||.|++|+
T Consensus       465 -----------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  465 -----------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             -----------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                       333333333222  2233333456799999999999995

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=3.8e-31  Score=249.56  Aligned_cols=281  Identities=17%  Similarity=0.288  Sum_probs=225.2

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      -+..|..+.|.|+|+.|++|+..|.+.+|+..+.                                             .
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------------------------------n  129 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------------------------------N  129 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCcee---------------------------------------------e
Confidence            4568999999999999999999999999997541                                             1


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      ....++.|..+|.++.|++++ .++||+.+|.|++|+..-........ |...|++++|+| +...|++++.||+|+|||
T Consensus       130 FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  130 FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWD  208 (464)
T ss_pred             HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEe
Confidence            234567899999999999988 99999999999999987544433334 458999999999 889999999999999999


Q ss_pred             CCCCe-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          338 VCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       338 ~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      ....+ ...+.+|.-.|.+++|+|.-..+++|+.|..|++||.+++.+...   ++    .|...|..+.|+|++ ++|+
T Consensus       209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t---lh----~HKntVl~~~f~~n~-N~Ll  280 (464)
T KOG0284|consen  209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT---LH----GHKNTVLAVKFNPNG-NWLL  280 (464)
T ss_pred             ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh---hh----hccceEEEEEEcCCC-CeeE
Confidence            87644 344588999999999999999999999999999999999887543   22    234789999999998 8999


Q ss_pred             EEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCC
Q 006909          417 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG  495 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g  495 (626)
                      +++.|..++++|++.....+....|...++++.|+|- ..++.+|+.||.|..|.+.... +        ...+.+-+++
T Consensus       281 t~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-p--------~~~i~~AHd~  351 (464)
T KOG0284|consen  281 TGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE-P--------LGEIPPAHDG  351 (464)
T ss_pred             EccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc-c--------ccCCCccccc
Confidence            9999999999999966666666669999999999995 4678889999999999998321 1        1112233456


Q ss_pred             cEEEEecCCCCcccccccCCCccccCccccc
Q 006909          496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  526 (626)
Q Consensus       496 ~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~  526 (626)
                      .+..++|.|-|..|+..+.   ++.+++|..
T Consensus       352 ~iwsl~~hPlGhil~tgsn---d~t~rfw~r  379 (464)
T KOG0284|consen  352 EIWSLAYHPLGHILATGSN---DRTVRFWTR  379 (464)
T ss_pred             ceeeeeccccceeEeecCC---Ccceeeecc
Confidence            6667777777766655333   344555655

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=6.4e-29  Score=246.27  Aligned_cols=278  Identities=24%  Similarity=0.441  Sum_probs=222.2

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .++|++|.++|++++|+|++++|++++.||.|++|++.+.                                        
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----------------------------------------   41 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----------------------------------------   41 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----------------------------------------
Confidence            3567899999999999999999999999999999999862                                        


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                           .....+.+|...+..+.|+|++ .+++++.|+.|++||+.+++.+..+. |...+.++.|+| ++.++++++.++
T Consensus        42 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~  115 (289)
T cd00200          42 -----ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDK  115 (289)
T ss_pred             -----CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCC
Confidence                 3456677899999999999987 89999999999999999877777664 777999999999 788888888899


Q ss_pred             cEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          332 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       332 ~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      .|++||+.+++... +..+...+.+++|+|++.++++++.+|.+++||+...+.... +.      .+...+.++.|+|+
T Consensus       116 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~------~~~~~i~~~~~~~~  188 (289)
T cd00200         116 TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT-LT------GHTGEVNSVAFSPD  188 (289)
T ss_pred             eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee-Ee------cCccccceEEECCC
Confidence            99999999666544 456888999999999999998888899999999986554322 22      23468999999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  490 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  490 (626)
                      + ..+++++.++.|++||............+...+.++.|+|++.++++++.|+.|++|++.++.......         
T Consensus       189 ~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---------  258 (289)
T cd00200         189 G-EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---------  258 (289)
T ss_pred             c-CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---------
Confidence            7 688888889999999987544333333477799999999999999998889999999998642111110         


Q ss_pred             eccCCcEEEEecCCCCcccccccCC
Q 006909          491 FFSEGVSVAVQWPGIGTEQKSLCSS  515 (626)
Q Consensus       491 ~~~~g~~~av~~s~~~~~l~~~~~~  515 (626)
                       .+.+.+..+.|++++..++....+
T Consensus       259 -~~~~~i~~~~~~~~~~~l~~~~~d  282 (289)
T cd00200         259 -GHTNSVTSLAWSPDGKRLASGSAD  282 (289)
T ss_pred             -ccCCcEEEEEECCCCCEEEEecCC
Confidence             122345666777776666554443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-30  Score=241.30  Aligned_cols=248  Identities=23%  Similarity=0.390  Sum_probs=220.9

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      -.+...|+||++.|..++|+..|++||+++.|-.+++||..+.                                     
T Consensus       140 g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-------------------------------------  182 (406)
T KOG0295|consen  140 GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-------------------------------------  182 (406)
T ss_pred             hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-------------------------------------
Confidence            3447889999999999999999999999999999999999762                                     


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                             ..+++.+.+|...|.+++|-|.| ++++++.|.+|+.|++.++-++.+|. |..+|..++.+. ||.++++++
T Consensus       183 -------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s  254 (406)
T KOG0295|consen  183 -------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCS  254 (406)
T ss_pred             -------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecC
Confidence                   34577888999999999999987 99999999999999999999999995 889999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeC---------------CCEEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909          329 IDGKVRIWGVCEKRVV-DWADVRDVISAICYIPD---------------GKGFIVGSITGTCHFYKASGNDLKLEKVDFH  392 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~---------------g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~  392 (626)
                      .|.+|++|-+.++++. .+..|..+|.+++|.|.               +.++.+++.|++|++||+.++.+...     
T Consensus       255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t-----  329 (406)
T KOG0295|consen  255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT-----  329 (406)
T ss_pred             CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE-----
Confidence            9999999999888654 36788889999999773               25899999999999999999977554     


Q ss_pred             cccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          393 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       393 ~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                        ..+|.+.|.+++|+|.| ++|+++.+|+++++||+.+.........|...++++.|+.+..++++|+-|.++++|..
T Consensus       330 --L~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  330 --LVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             --EecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence              23346899999999998 89999999999999999877766666678999999999999999999999999999964

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=5.5e-30  Score=232.90  Aligned_cols=253  Identities=20%  Similarity=0.292  Sum_probs=219.8

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      ..-.-++++|+++|..+.|.+|++.|+++|.|.+|+.||+++                                      
T Consensus        80 ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t--------------------------------------  121 (338)
T KOG0265|consen   80 CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET--------------------------------------  121 (338)
T ss_pred             ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc--------------------------------------
Confidence            334456779999999999999999999999999999999998                                      


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                             ++.+..+++|..-|+.+.-+.-|  ++.+++.|+++++||+++..+++++...-.++++.|.. .+..+++|+
T Consensus       122 -------G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sgg  193 (338)
T KOG0265|consen  122 -------GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGG  193 (338)
T ss_pred             -------ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeecc
Confidence                   45578889999999999854445  67899999999999999999999999889999999998 899999999


Q ss_pred             CCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEE
Q 006909          329 IDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~  406 (626)
                      .|+.|++||++.+... .+.+|.+.|+.+..+|+|.++.+-+.|.++++||++-...... ...+.++...........+
T Consensus       194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence            9999999999887654 5789999999999999999999999999999999986544333 2233443334445677889


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          407 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      |+|++ ..+.+|+.|..+++||.......++..+|.+.|+.+.|+|...+|.+++.|.+|++=.
T Consensus       274 wsp~~-~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  274 WSPNG-TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ccCCC-CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            99997 7999999999999999887777888888999999999999999999999999998743

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.4e-30  Score=236.91  Aligned_cols=315  Identities=20%  Similarity=0.355  Sum_probs=240.5

Q ss_pred             CcccccChhhHHHHHHHHHHhhccccchhccccCCCCCCCCccchhHhhhcccccccccccccccccc-cccCcEEEEEE
Q 006909          111 PECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKF  189 (626)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~f  189 (626)
                      .+.-.+++.++..++.+.++-|.++.  ..........-.. ....+...+.     ..+..+.+.++ +.+.-+-|..|
T Consensus       150 ~EV~VVppSRLlaLlGQaLKWQqHQG--LLPPGt~iDLFRG-kAA~K~~~Ee-----~~Pt~l~r~IKFg~KSh~EcA~F  221 (508)
T KOG0275|consen  150 GEVHVVPPSRLLALLGQALKWQQHQG--LLPPGTTIDLFRG-KAAMKDQEEE-----RYPTQLARSIKFGQKSHVECARF  221 (508)
T ss_pred             CceEEcChHHHHHHHHHHhhhHhhcC--CCCCCceeeeccc-hhhhhhhHhh-----hchHHhhhheecccccchhheee
Confidence            44555788999999999888776642  1111111111011 1111111111     11112222222 55677889999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCcc
Q 006909          190 SPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKG  269 (626)
Q Consensus       190 spdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  269 (626)
                      ||||+||++|+.||-|.+||..+++...                                     ++..+....+.-|..
T Consensus       222 SPDgqyLvsgSvDGFiEVWny~~GKlrK-------------------------------------DLkYQAqd~fMMmd~  264 (508)
T KOG0275|consen  222 SPDGQYLVSGSVDGFIEVWNYTTGKLRK-------------------------------------DLKYQAQDNFMMMDD  264 (508)
T ss_pred             CCCCceEeeccccceeeeehhccchhhh-------------------------------------hhhhhhhcceeeccc
Confidence            9999999999999999999999865421                                     011222344556889


Q ss_pred             ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-
Q 006909          270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-  345 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-  345 (626)
                      .|.|+.|+.|. .|++|+.||.|++|.+.+|+|++.|.  |...|+|+.|+. ++..+++++.|.++++.-+.+|++.. 
T Consensus       265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKE  343 (508)
T KOG0275|consen  265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKE  343 (508)
T ss_pred             ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHH
Confidence            99999999887 99999999999999999999999995  999999999999 99999999999999999999988764 


Q ss_pred             eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 006909          346 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  425 (626)
Q Consensus       346 ~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~  425 (626)
                      +.+|...|+...|.++|..+++++.||+|++|+..+.++....-.     .+...+|.++..-|.++..++++...++|.
T Consensus       344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-----~~~d~~vnsv~~~PKnpeh~iVCNrsntv~  418 (508)
T KOG0275|consen  344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-----LGTDYPVNSVILLPKNPEHFIVCNRSNTVY  418 (508)
T ss_pred             hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-----CCCcccceeEEEcCCCCceEEEEcCCCeEE
Confidence            789999999999999999999999999999999998876443111     123478999999998888999999999999


Q ss_pred             EEeCC-cceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909          426 ILDGV-DVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       426 iwd~~-~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      |.++. ..+..+.. ....+...+++.+|.|.++.+.++|+.++.|.+.++..
T Consensus       419 imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L  471 (508)
T KOG0275|consen  419 IMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL  471 (508)
T ss_pred             EEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence            99976 34444432 33456677888999999999999999999999998743

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=9.1e-29  Score=221.89  Aligned_cols=207  Identities=22%  Similarity=0.386  Sum_probs=171.7

Q ss_pred             ceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCC---CeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          261 LQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC---NQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~---~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                      ++.+.+|.+.+..++|+|. | .|++|+.|+.|++|+...   -.+...+  .|...|.+++|+| .+++|++||.|.++
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATV   85 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceE
Confidence            6788899999999999998 6 799999999999999984   3344444  3999999999999 99999999999999


Q ss_pred             EEEeCCCCe---EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          334 RIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       334 ~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      .||.-..++   +-.+.+|...|.+++|+++|++||+++.|..+-||.+..... ++   ...-...|...|..+.|+|.
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fe---c~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FE---CIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EE---EEeeeccccccccEEEEcCC
Confidence            999876544   335789999999999999999999999999999999974332 22   12223345678999999998


Q ss_pred             CCcEEEEEeCCCcEEEEeCC---cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          411 ESQRIMITSEDSKLRILDGV---DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      . .+|++++.|++|++|+-.   .-........|...|.+++|++.|..|+++++|++++||.+..
T Consensus       162 ~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~  226 (312)
T KOG0645|consen  162 E-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT  226 (312)
T ss_pred             c-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc
Confidence            5 699999999999999744   2233333344777999999999999999999999999999653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.5e-29  Score=224.22  Aligned_cols=279  Identities=18%  Similarity=0.272  Sum_probs=234.8

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      +.+++|.+.|.+++|+.+|..||+|+.|+++++|++...+.                                       
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---------------------------------------   54 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---------------------------------------   54 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------------------------
Confidence            66789999999999999999999999999999999986321                                       


Q ss_pred             cccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                          ..-....+|.+.|-.++|+|..  .+++++.|++|++||++.+++.........-.-+.|+| ++++++.++.|..
T Consensus        55 ----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp-~g~~~~~~~kdD~  129 (313)
T KOG1407|consen   55 ----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSP-DGEYIAVGNKDDR  129 (313)
T ss_pred             ----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcC-CCCEEEEecCccc
Confidence                1123456899999999999854  89999999999999999999999998777777889999 9999999999999


Q ss_pred             EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          333 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      |.+.|.++.+++........+..++|+.+++.++.....|.|.|.....-+...       ....|.....||.|+|+| 
T Consensus       130 it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~-------si~AH~snCicI~f~p~G-  201 (313)
T KOG1407|consen  130 ITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ-------SIKAHPSNCICIEFDPDG-  201 (313)
T ss_pred             EEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc-------ccccCCcceEEEEECCCC-
Confidence            999999999998888888889999999888888888888999998876443321       234456889999999998 


Q ss_pred             cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec
Q 006909          413 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  492 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  492 (626)
                      +++++|+.|..+.+||+.+.+..-....+.-+|..++||.||++||+||+|..|-|=+++++.....           +.
T Consensus       202 ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e-----------I~  270 (313)
T KOG1407|consen  202 RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE-----------IP  270 (313)
T ss_pred             ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE-----------ee
Confidence            8999999999999999987665555555788999999999999999999999999999998743322           23


Q ss_pred             cCCcEEEEecCCCCcccccccCCC
Q 006909          493 SEGVSVAVQWPGIGTEQKSLCSSS  516 (626)
Q Consensus       493 ~~g~~~av~~s~~~~~l~~~~~~~  516 (626)
                      .++.+..|+|+|....|+..+.+.
T Consensus       271 ~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  271 CEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             ccCCceeEEecCCCceeeEEecCC
Confidence            356677778888777777666543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.7e-29  Score=263.69  Aligned_cols=250  Identities=25%  Similarity=0.410  Sum_probs=212.0

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      +.+++.+|...|++++|+|+|+++++|+.|++|+|||+...                                       
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---------------------------------------  235 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---------------------------------------  235 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---------------------------------------
Confidence            56677899999999999999999999999999999999431                                       


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                           ...++++.+|...|++++|+|++ .+++|+.|++|+|||+++++++..+. |...|++++|++ ++++|++++.|
T Consensus       236 -----~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d  309 (456)
T KOG0266|consen  236 -----GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYD  309 (456)
T ss_pred             -----CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCC
Confidence                 34578899999999999999998 99999999999999999999999995 999999999999 99999999999


Q ss_pred             CcEEEEeCCCCeE--E-EeccCCC--CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          331 GKVRIWGVCEKRV--V-DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       331 g~v~iwd~~~~~~--~-~~~~~~~--~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      +.|++||+.++..  . ....+..  .+++++|+|+++++++++.|+.+++||+..............   . ...+.+.
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~---~-~~~~~~~  385 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN---L-VRCIFSP  385 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC---c-ceeEecc
Confidence            9999999999883  2 3444433  589999999999999999999999999998776543222111   0 0244455


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCC-CCCeEEEEEcCCCCEEEEEe--CCccEEEEECC
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGKHIISIG--DDCRVYVWNYD  472 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~s~s--~dg~I~iwd~~  472 (626)
                      .+++.+ .++++|+.|+.|++||..+.........| ...+..++++|..+++++++  .|+.|++|..+
T Consensus       386 ~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  386 TLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cccCCC-CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            557776 79999999999999998865555555556 88899999999999999998  78999999865

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-28  Score=220.58  Aligned_cols=297  Identities=19%  Similarity=0.237  Sum_probs=232.0

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      |+||..+++.++|+.+|.+|.+++.|.++.||-..+                                            
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n--------------------------------------------   41 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN--------------------------------------------   41 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecC--------------------------------------------
Confidence            679999999999999999999999999999998766                                            


Q ss_pred             cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC-----C
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-----D  330 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-----d  330 (626)
                       ++.+.++.||++.|+|+....+. .+++|+.|.++++||+++|+++..+....+|..+.|++ ++++++....     .
T Consensus        42 -GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~  119 (327)
T KOG0643|consen   42 -GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF-GGNLILASTDKQMGYT  119 (327)
T ss_pred             -CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-CCcEEEEEehhhcCcc
Confidence             45688999999999999998765 99999999999999999999999999999999999999 8888776653     3


Q ss_pred             CcEEEEeCCC-------Ce-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          331 GKVRIWGVCE-------KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       331 g~v~iwd~~~-------~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      +.|.++|++.       .+ ...+..+...++.+-|.|-++.|++|..+|.|.+||++++.........|      ...|
T Consensus       120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h------~~~I  193 (327)
T KOG0643|consen  120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH------SSKI  193 (327)
T ss_pred             eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh------cccc
Confidence            6799999983       33 55677778899999999999999999999999999999987655443333      4699


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCcc
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK  482 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~  482 (626)
                      +.++++|+. .++++++.|.+-++||..+....-.. ....+|++.+++|...+++.|+.....-|=-....        
T Consensus       194 nd~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty-~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r--------  263 (327)
T KOG0643|consen  194 NDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTY-TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTR--------  263 (327)
T ss_pred             ccccccCCc-ceEEecccCccceeeeccceeeEEEe-eecccccceecccccceEEecCCceeeeeeeeccc--------
Confidence            999999997 79999999999999998754332222 24679999999999988888764322111111100        


Q ss_pred             CCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCC
Q 006909          483 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKL  562 (626)
Q Consensus       483 ~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i  562 (626)
                                 .|..        ...++.+..            .+..-...+|-.++.+++|+|||+-.+|++. |+.|
T Consensus       264 -----------~GKF--------EArFyh~i~------------eEEigrvkGHFGPINsvAfhPdGksYsSGGE-DG~V  311 (327)
T KOG0643|consen  264 -----------AGKF--------EARFYHLIF------------EEEIGRVKGHFGPINSVAFHPDGKSYSSGGE-DGYV  311 (327)
T ss_pred             -----------ccch--------hhhHHHHHH------------HHHhccccccccCcceeEECCCCcccccCCC-CceE
Confidence                       0000        001111000            0111224567778999999999999989888 7888


Q ss_pred             CCCCc
Q 006909          563 PLWDV  567 (626)
Q Consensus       563 ~vwd~  567 (626)
                      ++.-.
T Consensus       312 R~h~F  316 (327)
T KOG0643|consen  312 RLHHF  316 (327)
T ss_pred             EEEEe
Confidence            87543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=239.45  Aligned_cols=291  Identities=20%  Similarity=0.283  Sum_probs=222.1

Q ss_pred             CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee---eEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~---~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                      .+..+.+..|+..|.-+.||++| +||+++.|.+..+|++.....   ..++ +|..+|..+.|+| |.+++++++.+..
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~  292 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEV  292 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHh
Confidence            45567888999999999999999 999999999999998854433   3333 5999999999999 9999999999999


Q ss_pred             EEEEeCCCCeEEEeccCC--CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          333 VRIWGVCEKRVVDWADVR--DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~~~--~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      +.+||+.++.......+.  ..+.+++|.|||..+++|+.|++|..||+.++....  +....     ...|.+++.++|
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~--W~gvr-----~~~v~dlait~D  365 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN--WEGVR-----DPKVHDLAITYD  365 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc--ccccc-----cceeEEEEEcCC
Confidence            999999999988766554  889999999999999999999999999998775322  22111     256999999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  490 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  490 (626)
                      | +++++...|..|++++.......-. .....+|++++.|.+++++++.=.+..|++||++....+.+....       
T Consensus       366 g-k~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh-------  436 (519)
T KOG0293|consen  366 G-KYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH-------  436 (519)
T ss_pred             C-cEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc-------
Confidence            8 7888888999999999664333211 124578999999999999999999999999999965332221000       


Q ss_pred             eccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                                   ..+.++...+-+                              -.+..+++|++. |++|+||+...+
T Consensus       437 -------------kq~~fiIrSCFg------------------------------g~~~~fiaSGSE-D~kvyIWhr~sg  472 (519)
T KOG0293|consen  437 -------------KQGHFIIRSCFG------------------------------GGNDKFIASGSE-DSKVYIWHRISG  472 (519)
T ss_pred             -------------cccceEEEeccC------------------------------CCCcceEEecCC-CceEEEEEccCC
Confidence                         111111111111                              113346888888 899999999888


Q ss_pred             CCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeec
Q 006909          571 SDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                                 ++......|....  +++.|++..++|+||+||+||||.+-
T Consensus       473 -----------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  473 -----------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             -----------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence                       3333333444333  34557799999999999999999753

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.6e-29  Score=254.00  Aligned_cols=288  Identities=16%  Similarity=0.249  Sum_probs=234.6

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      +..-+..|..++|+|...+++++-..|.|++||..-                                            
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM--------------------------------------------   40 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--------------------------------------------   40 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhh--------------------------------------------
Confidence            334566799999999999999999999999999875                                            


Q ss_pred             cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                       +..+..|..|.++|..++|+|++ .++||+.|..|+||+..+.+|+.++ +|-+.|..+.|++ .-..++++|.|.+|+
T Consensus        41 -~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIr  118 (1202)
T KOG0292|consen   41 -GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIR  118 (1202)
T ss_pred             -hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEE
Confidence             45688899999999999999988 9999999999999999999999877 6999999999999 888999999999999


Q ss_pred             EEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEE----------------------ee
Q 006909          335 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV----------------------DF  391 (626)
Q Consensus       335 iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~----------------------~~  391 (626)
                      ||+..++.++. ..+|...|.|..|+|....+++++-|.+|++||+.+-+......                      ..
T Consensus       119 IWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV  198 (1202)
T KOG0292|consen  119 IWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV  198 (1202)
T ss_pred             EEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence            99999988765 78999999999999999999999999999999986532211100                      00


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909          392 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  469 (626)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw  469 (626)
                      .....+|...|+-++|+|.- -+|++|++|..|++|.....  ...-...+|..+|.++-|+|...+|++.|+|++|+||
T Consensus       199 K~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  199 KHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW  277 (1202)
T ss_pred             eeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence            11133567889999999986 59999999999999986532  2222335589999999999999999999999999999


Q ss_pred             ECCCCCCC-CCCccCCccceeeeccCCcEEEEecCCCCcccccc
Q 006909          470 NYDELCFP-SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL  512 (626)
Q Consensus       470 d~~~~~~~-~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~  512 (626)
                      |+...... ...+.....-+++.||....+|.+ ++.|-.++.+
T Consensus       278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkl  320 (1202)
T KOG0292|consen  278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKL  320 (1202)
T ss_pred             ecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEE
Confidence            99876322 222334455677788887776654 5555544443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.5e-27  Score=217.95  Aligned_cols=276  Identities=25%  Similarity=0.406  Sum_probs=214.9

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      +...+.++.-.+.|+++.|+++|.+|++++.|-+++|||..+                                      
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~--------------------------------------   45 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS--------------------------------------   45 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC--------------------------------------
Confidence            445566666788999999999999999999999999999988                                      


Q ss_pred             CccccccCCCceeeccCccceEEEEEcC-CCeEEEEeC--CCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEE
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSM--DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~l~s~s~--d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s  326 (626)
                             +..++++..+...|..++|.. +..++.++.  |.+|+..++.+++.++.|. |...|+.++.+| -++.+++
T Consensus        46 -------g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS  117 (311)
T KOG1446|consen   46 -------GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLS  117 (311)
T ss_pred             -------CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEe
Confidence                   345667777777888888864 456666665  8899999999999999995 999999999999 7799999


Q ss_pred             EeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc-eeeeEEeeccccccCCCCeEEE
Q 006909          327 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      ++.|++|++||++..++......... ..++|.|.|-++|++.....|++||++... -+...+....   ......+.+
T Consensus       118 ~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---~~~~ew~~l  193 (311)
T KOG1446|consen  118 SSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---NDEAEWTDL  193 (311)
T ss_pred             cccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---CCccceeee
Confidence            99999999999997666544433322 347899999999999998899999998763 3333333331   223688999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCC-eEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC--
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGS-QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--  480 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~-v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~--  480 (626)
                      .|+||| +.++.++..+.+++.|.-  .....+........ ....+|+||++++++|+.||+|.+|+++++......  
T Consensus       194 ~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  194 EFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             EEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            999998 789999999999999965  44555666544442 367889999999999999999999999988432222  


Q ss_pred             ccCCccceeeeccCCcE
Q 006909          481 QKNSVRSCEHFFSEGVS  497 (626)
Q Consensus       481 ~~~~~~~~~~~~~~g~~  497 (626)
                      .......|+.|.|.-..
T Consensus       273 ~~~~~~~~~~fnP~~~m  289 (311)
T KOG1446|consen  273 PNGGPVSCVRFNPRYAM  289 (311)
T ss_pred             CCCCCccccccCCceee
Confidence            22445556666664433

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=9.5e-29  Score=229.47  Aligned_cols=214  Identities=16%  Similarity=0.218  Sum_probs=189.3

Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                      ..-|....+..+.+.+|.+.|.|+++.|.+ .|++|+.|++|+|||+.+|+...++. |...|..+++++ ...|+++++
T Consensus       134 rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~g  212 (460)
T KOG0285|consen  134 RPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAG  212 (460)
T ss_pred             CccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEec
Confidence            344555667788899999999999999977 89999999999999999999988885 999999999999 888999999


Q ss_pred             CCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909          329 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  407 (626)
                      .|+.|+.||+...++++ ..+|-..|.|++.+|.-+.|++|+.|.++++||+++.....   .    ..+|..+|.++.+
T Consensus       213 edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~---~----l~GH~~~V~~V~~  285 (460)
T KOG0285|consen  213 EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH---V----LSGHTNPVASVMC  285 (460)
T ss_pred             CCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE---E----ecCCCCcceeEEe
Confidence            99999999999888664 78899999999999999999999999999999999865432   1    2345689999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          408 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .|-++ .+++++.|++|++||++.......+..|...+.+++.+|....+++++.| .|+-|++..+
T Consensus       286 ~~~dp-qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g  350 (460)
T KOG0285|consen  286 QPTDP-QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG  350 (460)
T ss_pred             ecCCC-ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc
Confidence            98764 79999999999999999887777777799999999999999999999877 5999998876

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=2.3e-29  Score=232.58  Aligned_cols=242  Identities=24%  Similarity=0.449  Sum_probs=203.7

Q ss_pred             ccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909          168 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  247 (626)
Q Consensus       168 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (626)
                      .....+.+.|.||+|.|.|+.|.  .+.|++|+.|.+|+|||+.+                                   
T Consensus       224 ~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t-----------------------------------  266 (499)
T KOG0281|consen  224 KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT-----------------------------------  266 (499)
T ss_pred             cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-----------------------------------
Confidence            35567788899999999999994  66999999999999999998                                   


Q ss_pred             ecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEe----ecCCCCeEEEEEeeCCCCE
Q 006909          248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV----FDHHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~----~~~~~~v~~~~~~p~~~~~  323 (626)
                                ++++.++.+|...|..+.|+. |+++++|.|.++.+||+.....+..    .+|...|+.+.|   +.++
T Consensus       267 ----------ge~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~ky  332 (499)
T KOG0281|consen  267 ----------GEPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKY  332 (499)
T ss_pred             ----------CchhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccce
Confidence                      567889999999999999975 7999999999999999987653322    259999999999   5579


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          324 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      +++++.|.+|++|++.+++.+. +.+|+..|-|+.+  .|+++++|+.|.+|++||+..+.+...       ..+|..-|
T Consensus       333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv-------LeGHEeLv  403 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-------LEGHEELV  403 (499)
T ss_pred             EEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH-------HhchHHhh
Confidence            9999999999999999998776 6688899988875  688999999999999999998876422       33455789


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEeCCccee---------eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIH---------KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      .++.|..   +.+++|+.||+|+|||+.....         ......|.+.|..+.|.  ...|++++.|.+|.|||+.+
T Consensus       404 RciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  404 RCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             hheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCC
Confidence            9999975   4899999999999999753222         22234578899999984  67899999999999999988


Q ss_pred             C
Q 006909          474 L  474 (626)
Q Consensus       474 ~  474 (626)
                      +
T Consensus       479 ~  479 (499)
T KOG0281|consen  479 G  479 (499)
T ss_pred             C
Confidence            6

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.3e-27  Score=239.64  Aligned_cols=291  Identities=19%  Similarity=0.306  Sum_probs=237.8

Q ss_pred             eeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                      .++.||...|..++++.++.++..+..+.+++|+..+.+|++++.-. .+.+..|.| .++++++|...|.+.+||+.+.
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehh
Confidence            35679999999999999986666666789999999999999999755 899999999 9999999999999999999987


Q ss_pred             eEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce----eeeEEee-ccccccCCCCeEEEEEcCCCCcEE
Q 006909          342 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDF-HDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       342 ~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~----~~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      .++. ...|.+.|.+++.+||++.+++|+.|.+|++||+.-...    ....+.+ +.+.-.-...|.|+.+|||| ++|
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~L  523 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLL  523 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEE
Confidence            7664 557999999999999999999999999999999742111    0000111 11111234789999999998 899


Q ss_pred             EEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCC
Q 006909          416 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG  495 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g  495 (626)
                      +++--|++++||-+.+....+...+|.-||.++..|||++.++|||.|.+|+||-++-|..-     ++     -|.++.
T Consensus       524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH-----KS-----~fAHdD  593 (888)
T KOG0306|consen  524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH-----KS-----FFAHDD  593 (888)
T ss_pred             EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh-----hh-----hhcccC
Confidence            99999999999999888877788889999999999999999999999999999999876211     10     133455


Q ss_pred             cEEEEecCCCCcccccccCCCccccCccccc--cCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909          496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN--LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  569 (626)
Q Consensus       496 ~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~  569 (626)
                      .+..+.|.|....+++++.+.   .++-|+.  ++......+|-.-+..++.+|+|.++++++. |..|++|.-..
T Consensus       594 Svm~V~F~P~~~~FFt~gKD~---kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh-D~sIRlwE~td  665 (888)
T KOG0306|consen  594 SVMSVQFLPKTHLFFTCGKDG---KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH-DKSIRLWERTD  665 (888)
T ss_pred             ceeEEEEcccceeEEEecCcc---eEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC-CceeEeeeccC
Confidence            667888888877777777664   4677744  5666677888888999999999999999998 89999997654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.3e-29  Score=234.20  Aligned_cols=244  Identities=22%  Similarity=0.331  Sum_probs=198.8

Q ss_pred             cccccccccc---cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCc
Q 006909          169 TALYTSQEIQ---AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  245 (626)
Q Consensus       169 ~~~~~~~~l~---~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (626)
                      .+.++.+++.   .....|.|+.+.  ...+++|..|.+|+|||..+                                 
T Consensus       182 ~Gr~~~~rinc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~---------------------------------  226 (499)
T KOG0281|consen  182 CGRHLLQRINCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS---------------------------------  226 (499)
T ss_pred             ccceeeeeecCCcccCCceEEEEec--chhhhcccccCceEEecccc---------------------------------
Confidence            3444455543   245789999984  45799999999999999987                                 


Q ss_pred             eeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEE
Q 006909          246 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF  324 (626)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l  324 (626)
                                  ...+..+.||++.|.|+.|.. ..+++||.|.+|+|||++++++++++ .|...|..+.|+   ++++
T Consensus       227 ------------~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---ng~m  290 (499)
T KOG0281|consen  227 ------------LECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYM  290 (499)
T ss_pred             ------------HHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---CCEE
Confidence                        455788999999999999864 38999999999999999999999887 688899999995   5899


Q ss_pred             EEEeCCCcEEEEeCCCCeEEE----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          325 ISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      ++++.|.++.+||+....-..    +.+|...|+.+.|+  .+++++++.|.+|++|++.+......       ..+|..
T Consensus       291 vtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRt-------l~gHkR  361 (499)
T KOG0281|consen  291 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRT-------LNGHKR  361 (499)
T ss_pred             EEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehh-------hhcccc
Confidence            999999999999998755322    56899999999985  55999999999999999998765322       223446


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  477 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~  477 (626)
                      .|.|+++..   +++++|+.|.+|++||+..+...-...+|..-|.++.|.  .+.|++|+.||+|+|||+..+..+
T Consensus       362 GIAClQYr~---rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  362 GIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             cceehhccC---eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCC
Confidence            788887742   699999999999999987544333334488899999994  788999999999999999987443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.1e-29  Score=220.10  Aligned_cols=240  Identities=20%  Similarity=0.371  Sum_probs=206.4

Q ss_pred             ccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          180 HKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       180 H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      -.+.+..++|+++. ..+++++.||+++|||...                                            ..
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------------------------~s   94 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------------------------------PS   94 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------------------------------CC
Confidence            45779999999865 4788899999999999654                                            25


Q ss_pred             CCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      .|++.++.|...|.++.|++-.  .++++|.|++|++|+..-++.+.+|. |...|...+|+|..++.|+++|.|+++++
T Consensus        95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l  174 (311)
T KOG0277|consen   95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL  174 (311)
T ss_pred             cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence            6899999999999999999753  78888999999999999999999995 88999999999999999999999999999


Q ss_pred             EeCCC-CeEEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          336 WGVCE-KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       336 wd~~~-~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      ||++. ++.+.+..|...|.++.|+. +.+.+++|+.|+.|+.||+++.+.++..+.      +|+-.|..++|||....
T Consensus       175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~------gh~~AVRkvk~Sph~~~  248 (311)
T KOG0277|consen  175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN------GHGLAVRKVKFSPHHAS  248 (311)
T ss_pred             EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec------CCceEEEEEecCcchhh
Confidence            99875 66666888889999999998 667889999999999999998887654443      34589999999998878


Q ss_pred             EEEEEeCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEEC
Q 006909          414 RIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~  471 (626)
                      .|++++.|-+++|||...   .+.++.  .|..-+..+.|++ ++.++|+++.|..++||+-
T Consensus       249 lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  249 LLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             HhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence            999999999999999652   233333  3888899999987 5679999999999999984

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.3e-27  Score=217.65  Aligned_cols=275  Identities=21%  Similarity=0.326  Sum_probs=217.7

Q ss_pred             cccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          179 AHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       179 ~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .-.+.|.+++||| ...+++.||.||+||+|++.....                                          
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~------------------------------------------   62 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ------------------------------------------   62 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCc------------------------------------------
Confidence            3567899999999 445677899999999999986210                                          


Q ss_pred             CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCC--EEEEEeCCCcEE
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN--YFISGSIDGKVR  334 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~s~s~dg~v~  334 (626)
                      ..+ +....|.++|.+++|+.+| .+++|+.|+.+++||+.+++....-.|..+|.++.|-+ ...  .|++||.|.+|+
T Consensus        63 ~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlK  140 (347)
T KOG0647|consen   63 LVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLK  140 (347)
T ss_pred             ccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-CCCcceeEeccccccee
Confidence            111 4455799999999999998 89999999999999999998888778999999999987 555  799999999999


Q ss_pred             EEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          335 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       335 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      .||++....+......+.+.++..-  ...++++..+..|.+|++++.......+...-     .-.+.|++..++. ..
T Consensus       141 fWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpL-----k~Q~R~va~f~d~-~~  212 (347)
T KOG0647|consen  141 FWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPL-----KWQTRCVACFQDK-DG  212 (347)
T ss_pred             ecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcc-----cceeeEEEEEecC-Cc
Confidence            9999999998888888888887754  34788999999999999987765544332221     2568899998886 46


Q ss_pred             EEEEeCCCcEEEEeCCcc----eeeeeecCCC-------CCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC-CCCCCcc
Q 006909          415 IMITSEDSKLRILDGVDV----IHKFKGLPKS-------GSQMSASFTTTGKHIISIGDDCRVYVWNYDELC-FPSSKQK  482 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~~----~~~~~~~~~~-------~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~-~~~~~~~  482 (626)
                      .+.|+-+|.+.|..+...    ...|+.|...       -.|++++|+|.-..|+|++.||++.+||-+... +......
T Consensus       213 ~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~  292 (347)
T KOG0647|consen  213 FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH  292 (347)
T ss_pred             eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence            699999999999876643    2344444321       147889999999999999999999999987652 2232344


Q ss_pred             CCccceeeeccCCcEEEEecCCC
Q 006909          483 NSVRSCEHFFSEGVSVAVQWPGI  505 (626)
Q Consensus       483 ~~~~~~~~~~~~g~~~av~~s~~  505 (626)
                      ...++|..|+.+|.++|.|.+-|
T Consensus       293 ~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  293 PQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             CCccceeEecCCCCEEEEEeecc
Confidence            55677889999999988874433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=4.2e-28  Score=221.16  Aligned_cols=234  Identities=21%  Similarity=0.369  Sum_probs=186.7

Q ss_pred             ccccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCC
Q 006909          164 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  243 (626)
Q Consensus       164 ~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (626)
                      .....+..+....+..|++++.+.+|||||.++|||+.|.+|+|.|++..-.....             ..+.....   
T Consensus        95 ~~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~-------------~em~~~~~---  158 (430)
T KOG0640|consen   95 GSSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP-------------KEMISGDT---  158 (430)
T ss_pred             cCCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch-------------hhhccCCc---
Confidence            33344556677778899999999999999999999999999999999743211100             00000000   


Q ss_pred             CceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee---eEeecCCCCeEEEEEeeC
Q 006909          244 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPI  319 (626)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~~p~  319 (626)
                                 +.....++++..|..+|+++.|+|.. .|++++.|++|+++|+.....   .+.|....+|.++.|+| 
T Consensus       159 -----------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-  226 (430)
T KOG0640|consen  159 -----------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-  226 (430)
T ss_pred             -----------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-
Confidence                       00123478899999999999999976 899999999999999975433   34456778999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEE----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc
Q 006909          320 DDNYFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  395 (626)
Q Consensus       320 ~~~~l~s~s~dg~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  395 (626)
                      .|.+++.|..-.++++||+.+-++..    -..|.+.|+++.+++.|+..++++.||.|++||--++++....-..|+  
T Consensus       227 sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~--  304 (430)
T KOG0640|consen  227 SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG--  304 (430)
T ss_pred             CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC--
Confidence            99999999999999999999987654    356788999999999999999999999999999877776544333444  


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                         +..|.+..|..+| +++++.+.|..+++|.+.+
T Consensus       305 ---gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  305 ---GSEVCSAVFTKNG-KYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             ---CceeeeEEEccCC-eEEeecCCcceeeeeeecC
Confidence               3789999999997 8999999999999998653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=2.7e-27  Score=220.82  Aligned_cols=273  Identities=17%  Similarity=0.241  Sum_probs=221.5

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeee-----------cCCCCC-ccCCCCCeeeecCC
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF-----------TDDGGF-GSNAKEGKIKFGKK  240 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~  240 (626)
                      ..-++.+|++.|+|+.||.||.+||||+.+|.|+||+..++.......           .+.+.. .+...++.+-+   
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWm---  174 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWM---  174 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEE---
Confidence            455688999999999999999999999999999999999876655443           333332 22333333333   


Q ss_pred             CCCCceeecCCccccccC-CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEE
Q 006909          241 KSSHVPVVIPDEVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQF  316 (626)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~  316 (626)
                                   |.+.. ...+.+.||..++++=.|.|+| +++++..||+|++||..+++++..+.  ......++.+
T Consensus       175 -------------w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~  241 (399)
T KOG0296|consen  175 -------------WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL  241 (399)
T ss_pred             -------------EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence                         33333 5567889999999999999999 89999999999999999999998885  3446788899


Q ss_pred             eeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc---------CCCCeEEEE---EeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909          317 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---------VRDVISAIC---YIPDGKGFIVGSITGTCHFYKASGNDL  384 (626)
Q Consensus       317 ~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~i~~i~---~sp~g~~l~~g~~dg~i~i~d~~~~~~  384 (626)
                      +. .+..++.|+.++.+++-+..+++++....         +...+.++.   ++..=.+.|+|+.||+|.|||+.....
T Consensus       242 ~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~  320 (399)
T KOG0296|consen  242 NL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL  320 (399)
T ss_pred             cc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh
Confidence            88 89999999999999999998888776443         233344444   444556889999999999999987654


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      ..        ...|...|+.+.|-++  .+|++++.+|.|+.||.++....+...+|...|..++++|+.++++|+|.|+
T Consensus       321 R~--------~c~he~~V~~l~w~~t--~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  321 RH--------ICEHEDGVTKLKWLNT--DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             he--------eccCCCceEEEEEcCc--chheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence            22        2233478999999994  5999999999999999999888888888999999999999999999999999


Q ss_pred             cEEEEECC
Q 006909          465 RVYVWNYD  472 (626)
Q Consensus       465 ~I~iwd~~  472 (626)
                      +.+||+.+
T Consensus       391 ~a~VF~v~  398 (399)
T KOG0296|consen  391 TALVFEVP  398 (399)
T ss_pred             eEEEEecC
Confidence            99999875

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.4e-27  Score=217.64  Aligned_cols=208  Identities=22%  Similarity=0.370  Sum_probs=176.3

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC------------C------eeeEee-cCCCCeEEEEEeeCC
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------N------QCLNVF-DHHNYVTCVQFNPID  320 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~------------~------~~~~~~-~~~~~v~~~~~~p~~  320 (626)
                      ...+..|.+++.+.+|++|| ++++|+.|..|+|.|++.            +      -.++++ .|.++|+++.|+| .
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r  183 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R  183 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence            45667899999999999999 889999999999999861            1      123444 5999999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCe---EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc
Q 006909          321 DNYFISGSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  397 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  397 (626)
                      ..+|++|+.|++|++||.....   ..+......+|.+++|+|.|.+|++|+.-.++++||+.+.++-....    ....
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan----Pd~q  259 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN----PDDQ  259 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC----cccc
Confidence            9999999999999999987533   33455667889999999999999999999999999999887654422    2445


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |.+.|+++.+++.| .+.++++.||.|+|||.-  .++..+........|.++.|+.+|+||++.+.|..+++|.+.++
T Consensus       260 ht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  260 HTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             cccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            67899999999998 799999999999999965  45566665556678999999999999999999999999999886

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.2e-27  Score=222.33  Aligned_cols=253  Identities=18%  Similarity=0.267  Sum_probs=212.0

Q ss_pred             ccccccccccCcEEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDG---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg---~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      ....++.||+++|.++++.-..   ..|++++.|.++++|.++.+...                                
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~--------------------------------  182 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK--------------------------------  182 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh--------------------------------
Confidence            3456788999999988875433   36999999999999998864321                                


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-------------------------Ceee
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------------------------NQCL  302 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-------------------------~~~~  302 (626)
                               ...++...||...|-++...+++ .+++||.|.+|+||+..+                         +.++
T Consensus       183 ---------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  183 ---------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             ---------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence                     12234445999999999999988 999999999999999321                         1122


Q ss_pred             Eee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC
Q 006909          303 NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  381 (626)
Q Consensus       303 ~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~  381 (626)
                      .++ +|..+|.++.|++  ...+++++.|.+|+.||+.++...........+++++++|..++|++|+.|..|++||.++
T Consensus       254 vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  254 VTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             EEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence            233 5999999999985  7789999999999999999999998888889999999999999999999999999999998


Q ss_pred             CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909          382 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISI  460 (626)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~  460 (626)
                      +.-......+.+    |.+.|.++.|+|...+.|++++.|+++++||++... ..+....|...|.++.|. ++.+|++|
T Consensus       332 ~~gs~v~~s~~g----H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSG  406 (423)
T KOG0313|consen  332 GDGSVVSQSLIG----HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSG  406 (423)
T ss_pred             CCCceeEEeeec----chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEec
Confidence            876555444444    458999999999988999999999999999999766 667777899999999996 57799999


Q ss_pred             eCCccEEEEECC
Q 006909          461 GDDCRVYVWNYD  472 (626)
Q Consensus       461 s~dg~I~iwd~~  472 (626)
                      +.|++|+|+.-.
T Consensus       407 GaD~~l~i~~~~  418 (423)
T KOG0313|consen  407 GADNKLRIFKGS  418 (423)
T ss_pred             cCcceEEEeccc
Confidence            999999999754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=8.6e-27  Score=238.33  Aligned_cols=381  Identities=17%  Similarity=0.186  Sum_probs=286.6

Q ss_pred             ccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909          168 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  247 (626)
Q Consensus       168 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (626)
                      +..-.+..+++++...|+++.=+|--..+|.|..+|+|.|+++..                                   
T Consensus       189 vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-----------------------------------  233 (910)
T KOG1539|consen  189 VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-----------------------------------  233 (910)
T ss_pred             eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-----------------------------------
Confidence            344567778899999999999999988999999999999999987                                   


Q ss_pred             ecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCE
Q 006909          248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~  323 (626)
                                .+.+.+++...+.|+.++|..||  .+++|+..|.+.+||++..+.+....  |.+.|..+.|.| ....
T Consensus       234 ----------dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epV  302 (910)
T KOG1539|consen  234 ----------DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPV  302 (910)
T ss_pred             ----------CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCce
Confidence                      34456666446999999999888  78888889999999999888877764  888999999999 8889


Q ss_pred             EEEEeCCCcEEEEeCCC--C--e-EEEeccCCCCeEEEEEe-eCCCEEEEEecCCcEEEEEcC-----------------
Q 006909          324 FISGSIDGKVRIWGVCE--K--R-VVDWADVRDVISAICYI-PDGKGFIVGSITGTCHFYKAS-----------------  380 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~--~--~-~~~~~~~~~~i~~i~~s-p~g~~l~~g~~dg~i~i~d~~-----------------  380 (626)
                      +++++.|+.+++|=..+  +  + +....+|..+..++.|. .+|..+.+++.|++.+.|++.                 
T Consensus       303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~  382 (910)
T KOG1539|consen  303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA  382 (910)
T ss_pred             EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence            99999999988884443  3  1 33356788888888887 577778888877766655542                 


Q ss_pred             ------------------------------------------------CCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          381 ------------------------------------------------GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       381 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                                                                      +...-...+. +.+.+.....+++++.++.| 
T Consensus       383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~CG-  460 (910)
T KOG1539|consen  383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSFCG-  460 (910)
T ss_pred             ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec-CccccccCcceEEEEEeccC-
Confidence                                                            1111000000 00111134678899999998 


Q ss_pred             cEEEEEeCCCcEEEEeCCcceeeeee---cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909          413 QRIMITSEDSKLRILDGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  489 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  489 (626)
                      ++.+.|+..|.|-+|++...+..-..   ..|..+|++++....++.+++++.+|.+++||+.+.........+....+.
T Consensus       461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~i  540 (910)
T KOG1539|consen  461 NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGI  540 (910)
T ss_pred             ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCccee
Confidence            79999999999999999877665444   468999999999999999999999999999999987544444444455555


Q ss_pred             eeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909          490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  569 (626)
Q Consensus       490 ~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~  569 (626)
                      ..+.....+|++...-...++....-            .-...+.+|+..+++++|||||+++++++. |++|++||+++
T Consensus       541 v~hr~s~l~a~~~ddf~I~vvD~~t~------------kvvR~f~gh~nritd~~FS~DgrWlisasm-D~tIr~wDlpt  607 (910)
T KOG1539|consen  541 VYHRVSDLLAIALDDFSIRVVDVVTR------------KVVREFWGHGNRITDMTFSPDGRWLISASM-DSTIRTWDLPT  607 (910)
T ss_pred             eeeehhhhhhhhcCceeEEEEEchhh------------hhhHHhhccccceeeeEeCCCCcEEEEeec-CCcEEEEeccC
Confidence            55555555555544444444433221            122346788889999999999999999999 89999999999


Q ss_pred             CCCCCCCChhhHHHHhh-hccCCccccccccccceEEEEecCC-ceEeeeeecC
Q 006909          570 DSDGYCQDPQQQRLQQQ-CLNNVDDVRAISATWGLVIVTAGCD-GMIKTFHNYG  621 (626)
Q Consensus       570 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~dg~~ivt~g~D-g~Irvw~~~g  621 (626)
                      +.           +... .....+....++| +|++|||+..| .-|.+|-|-.
T Consensus       608 ~~-----------lID~~~vd~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  608 GT-----------LIDGLLVDSPCTSLSFSP-NGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             cc-----------eeeeEecCCcceeeEECC-CCCEEEEEEecCceEEEEEchh
Confidence            82           2222 2344455567778 79999999999 4599998854

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-26  Score=212.10  Aligned_cols=310  Identities=19%  Similarity=0.241  Sum_probs=214.5

Q ss_pred             CccchhHhhhcccccccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------------cc
Q 006909          151 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV---------------AA  215 (626)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~---------------~~  215 (626)
                      ++.+..+..+.+.+...|.+.....+|++|.+.|++|+|+.||++|||++.|++|+||++...               ..
T Consensus        56 kkk~hqr~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp  135 (420)
T KOG2096|consen   56 KKKKHQRNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHP  135 (420)
T ss_pred             chhcccchhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCc
Confidence            344555666777777788888899999999999999999999999999999999999998752               12


Q ss_pred             eeeeecCCCCCccC-C-CCCeeeecCC-CCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcE
Q 006909          216 SCKSFTDDGGFGSN-A-KEGKIKFGKK-KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTV  291 (626)
Q Consensus       216 ~~~~~~~~~~~~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v  291 (626)
                      ....|.++...... . ....++.+.. .........+.-    .....+--..|.-.|..+-...++ +|++++.|.+|
T Consensus       136 T~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v----~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i  211 (420)
T KOG2096|consen  136 TRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFV----HIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKI  211 (420)
T ss_pred             eEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccc----cccccccchhcccceEEEeecCCceEEEEecCCCcE
Confidence            33445555443221 1 1122221111 000000000000    000111223466677777766666 89999999999


Q ss_pred             EEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC---CC------eEEEeccCCCCeEEEEEeeC
Q 006909          292 RMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC---EK------RVVDWADVRDVISAICYIPD  361 (626)
Q Consensus       292 ~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~---~~------~~~~~~~~~~~i~~i~~sp~  361 (626)
                      .+|++. |+.+..+. ....-+..+.+| +|+++++++..--|++|.+-   .|      ++..+.+|...|..++|+|+
T Consensus       212 ~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~  289 (420)
T KOG2096|consen  212 CLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS  289 (420)
T ss_pred             EEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence            999999 88888886 333556778999 99999999999999999863   22      34568899999999999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCCceeee---EEe-eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce--ee
Q 006909          362 GKGFIVGSITGTCHFYKASGNDLKLE---KVD-FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HK  435 (626)
Q Consensus       362 g~~l~~g~~dg~i~i~d~~~~~~~~~---~~~-~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~--~~  435 (626)
                      ...+++.+.||++++||+.-....-+   .+. ........+.....+.++|.|  .+++.+....++++..++..  ..
T Consensus       290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g--~~lA~s~gs~l~~~~se~g~~~~~  367 (420)
T KOG2096|consen  290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG--DSLAVSFGSDLKVFASEDGKDYPE  367 (420)
T ss_pred             cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC--cEEEeecCCceEEEEcccCccchh
Confidence            99999999999999999863221111   000 000011123444589999998  45556667889999866432  22


Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          436 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       436 ~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      ++ ..|...|.+++|+++|+++++++ |..+++..
T Consensus       368 ~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  368 LE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             HH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            22 23888999999999999999998 67787776

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=4.8e-28  Score=229.06  Aligned_cols=281  Identities=20%  Similarity=0.360  Sum_probs=229.4

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      .....+..|.+.|..+.|-++...|+||+.|..|++|++...+                                     
T Consensus       166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-------------------------------------  208 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-------------------------------------  208 (459)
T ss_pred             hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-------------------------------------
Confidence            3445678999999999999998899999999999999987632                                     


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                            ...+.++.|..+.|+.+.|.+++ ++++++.|+.+++|++...+...++ +|.+.|+++.|.. ....+++|+.
T Consensus       209 ------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~  281 (459)
T KOG0288|consen  209 ------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSA  281 (459)
T ss_pred             ------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccc
Confidence                  13467788888999999999887 8999999999999999999998888 4999999999987 5556999999


Q ss_pred             CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      |.+|++||+....+....-....+..|+.+  ...+++|..|++|++||.++...... +..       ++.|+++..++
T Consensus       282 DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s-v~~-------gg~vtSl~ls~  351 (459)
T KOG0288|consen  282 DRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS-VPL-------GGRVTSLDLSM  351 (459)
T ss_pred             cchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeE-eec-------CcceeeEeecc
Confidence            999999999998887766666777777766  55788999999999999998776443 222       26899999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCc--ceeeeeec--CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCc
Q 006909          410 DESQRIMITSEDSKLRILDGVD--VIHKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV  485 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~--~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  485 (626)
                      ++ ..+++++.|.++.+.|+++  ....+...  ......+.+.|||++.|+++||.||.|+||++.++.........  
T Consensus       352 ~g-~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s--  428 (459)
T KOG0288|consen  352 DG-LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS--  428 (459)
T ss_pred             CC-eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC--
Confidence            98 7888889999999999874  34444432  23345889999999999999999999999999987443333221  


Q ss_pred             cceeeeccCCcEEEEecCCCCcccccccCC
Q 006909          486 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSS  515 (626)
Q Consensus       486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~~~  515 (626)
                            +.+..+++++|+|.|..+...+.+
T Consensus       429 ------~s~~aI~s~~W~~sG~~Llsadk~  452 (459)
T KOG0288|consen  429 ------TSNAAITSLSWNPSGSGLLSADKQ  452 (459)
T ss_pred             ------CCCcceEEEEEcCCCchhhcccCC
Confidence                  112257899999999988876664

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=5.2e-26  Score=225.35  Aligned_cols=244  Identities=26%  Similarity=0.485  Sum_probs=204.8

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ....+.+|...|..+.|+|++++|++++.||.|++|++.+                                        
T Consensus        43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~----------------------------------------   82 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET----------------------------------------   82 (289)
T ss_pred             cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc----------------------------------------
Confidence            3455678999999999999999999999999999999986                                        


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                           ...+..+..|...|.++.|++++ ++++++.|+.|.+||+.+++....+. |...+.+++|+| ++.++++++.+
T Consensus        83 -----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~  156 (289)
T cd00200          83 -----GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQD  156 (289)
T ss_pred             -----ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCC
Confidence                 23456677888899999999987 66666669999999999888888776 888999999999 78888888889


Q ss_pred             CcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          331 GKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       331 g~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      +.|++||+++++.. .+..+...+.+++|+|+++.+++++.+|.+++||+........ +      ..+...+.++.|+|
T Consensus       157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~------~~~~~~i~~~~~~~  229 (289)
T cd00200         157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT-L------RGHENGVNSVAFSP  229 (289)
T ss_pred             CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc-h------hhcCCceEEEEEcC
Confidence            99999999876644 3556777999999999999999999999999999987544321 1      12346899999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          410 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      ++ .++++++.++.|++||............|...+.+++|+|++++|++++.|+.|++|+
T Consensus       230 ~~-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         230 DG-YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CC-cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            95 6788888899999999875444444445778999999999999999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.7e-27  Score=240.98  Aligned_cols=251  Identities=21%  Similarity=0.420  Sum_probs=211.3

Q ss_pred             cccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909          167 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  246 (626)
Q Consensus       167 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (626)
                      .+..-.+...+..|.|+|..++|+|++.++++||+|-.|+||+..+                                  
T Consensus        37 DYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~----------------------------------   82 (1202)
T KOG0292|consen   37 DYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT----------------------------------   82 (1202)
T ss_pred             hhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc----------------------------------
Confidence            3445567778899999999999999999999999999999999987                                  


Q ss_pred             eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEE
Q 006909          247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF  324 (626)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l  324 (626)
                                 ..++.++.||-..|..+.|++.- .++|+|.|.+|+||+..++.++..+ +|...|.|.+|+| ....+
T Consensus        83 -----------rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlI  150 (1202)
T KOG0292|consen   83 -----------RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLI  150 (1202)
T ss_pred             -----------ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceE
Confidence                       45678899999999999999876 9999999999999999999999988 5999999999999 99999


Q ss_pred             EEEeCCCcEEEEeCCCCe----------------------------EE--EeccCCCCeEEEEEeeCCCEEEEEecCCcE
Q 006909          325 ISGSIDGKVRIWGVCEKR----------------------------VV--DWADVRDVISAICYIPDGKGFIVGSITGTC  374 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~~~----------------------------~~--~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i  374 (626)
                      +++|.|.+||+||+..-+                            ++  .+.+|...|+-++|+|.-..+++|+.|..|
T Consensus       151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV  230 (1202)
T KOG0292|consen  151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV  230 (1202)
T ss_pred             EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence            999999999999985311                            11  145788889999999999999999999999


Q ss_pred             EEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcC
Q 006909          375 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTT  452 (626)
Q Consensus       375 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp  452 (626)
                      ++|..+..+.    +.. ...++|.+.|+++.|+|.. .++++.+.|++|+|||+.  +.+++++.  .....+.++-+|
T Consensus       231 KlWrmnetKa----WEv-DtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~v~tfrr--endRFW~laahP  302 (1202)
T KOG0292|consen  231 KLWRMNETKA----WEV-DTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTSVQTFRR--ENDRFWILAAHP  302 (1202)
T ss_pred             eEEEeccccc----eee-hhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccceeeeec--cCCeEEEEEecC
Confidence            9999875432    221 2255677999999999985 799999999999999976  45556654  567788888899


Q ss_pred             CCCEEEEEeCCccEEEEECC
Q 006909          453 TGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       453 ~g~~l~s~s~dg~I~iwd~~  472 (626)
                      ..+++++|. |+-+.||.++
T Consensus       303 ~lNLfAAgH-DsGm~VFkle  321 (1202)
T KOG0292|consen  303 ELNLFAAGH-DSGMIVFKLE  321 (1202)
T ss_pred             Ccceeeeec-CCceEEEEEc
Confidence            988777664 5556666665

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.2e-26  Score=210.63  Aligned_cols=269  Identities=19%  Similarity=0.260  Sum_probs=210.0

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      -.+.|.+|.|+|.+..|+.++.||++++|++...                                              
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~----------------------------------------------   45 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN----------------------------------------------   45 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch----------------------------------------------
Confidence            3578999999999999999999999999999862                                              


Q ss_pred             CceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909          260 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  339 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~  339 (626)
                      .+.....|..++.+++|.++..+++|+.||.|+.+|+.++.....-.|..+|.|+..++ ..+.+++|++|++|++||.+
T Consensus        46 ~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   46 SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecc
Confidence            23333458999999999998899999999999999999998888888999999999999 88899999999999999999


Q ss_pred             CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909          340 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  419 (626)
Q Consensus       340 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s  419 (626)
                      .............|.++..  .|+.|++|+.+..+.+||+++.......     +.......+.++++.|++ .=+++++
T Consensus       125 ~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~-----reS~lkyqtR~v~~~pn~-eGy~~sS  196 (323)
T KOG1036|consen  125 NKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR-----RESSLKYQTRCVALVPNG-EGYVVSS  196 (323)
T ss_pred             ccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh-----ccccceeEEEEEEEecCC-CceEEEe
Confidence            8666666666668887765  5779999999999999999987765421     111223678999999975 5688999


Q ss_pred             CCCcEEEEeCC------cceeeeeecCCC-------CCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCcc-CCc
Q 006909          420 EDSKLRILDGV------DVIHKFKGLPKS-------GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK-NSV  485 (626)
Q Consensus       420 ~dg~i~iwd~~------~~~~~~~~~~~~-------~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~  485 (626)
                      -||.|.+=...      .....|+.|...       -+|++++|+|--..++||+.||.|.+||+.+.+.....+. ...
T Consensus       197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~S  276 (323)
T KOG1036|consen  197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETS  276 (323)
T ss_pred             ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCc
Confidence            99998875433      222334433211       2789999999999999999999999999987632222222 223


Q ss_pred             cceeeeccCCcEEEEecC
Q 006909          486 RSCEHFFSEGVSVAVQWP  503 (626)
Q Consensus       486 ~~~~~~~~~g~~~av~~s  503 (626)
                      +..++|+.+|..+|++.+
T Consensus       277 I~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  277 ISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEEEeccCCCeEEEEec
Confidence            444566666666666544

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=212.76  Aligned_cols=243  Identities=21%  Similarity=0.341  Sum_probs=205.8

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ..-.+.+|.++|++++.+  |.|+|+||.|-+|+|||+..                                        
T Consensus        35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k----------------------------------------   72 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK----------------------------------------   72 (362)
T ss_pred             ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccc----------------------------------------
Confidence            344567999999999985  89999999999999999987                                        


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                           ...+..+..|.+.|+++.|.+.-   .|++|+.||.|.+|+.....++..+. |...|+.++.+| .+++.++.+
T Consensus        73 -----~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg  146 (362)
T KOG0294|consen   73 -----RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVG  146 (362)
T ss_pred             -----hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEc
Confidence                 34567777899999999999764   89999999999999999999999985 888999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          329 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      .|+.+++||+-.++...........+.+.|+|.|.+++++..+ .|-+|.+.+...... +..       ...+.++.|-
T Consensus       147 ~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~-i~~-------~~r~l~~~~l  217 (362)
T KOG0294|consen  147 GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFRE-IEN-------PKRILCATFL  217 (362)
T ss_pred             CCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhh-hhc-------cccceeeeec
Confidence            9999999999998887777777777789999999999998876 688898876654322 111       1457777776


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEE--cCCCCEEEEEeCCccEEEEECCCC
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ..  ..+++|..|+.|.+||............|...|-++.+  .|++.+|+++|.||.|+|||++..
T Consensus       218 ~~--~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  218 DG--SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CC--ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            65  48999999999999998865555555668899988874  578899999999999999999865

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=5.2e-28  Score=214.29  Aligned_cols=286  Identities=21%  Similarity=0.330  Sum_probs=236.7

Q ss_pred             cccccccCcEEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          175 QEIQAHKGCIWTLKFSP---DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fsp---dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      .+..||+.+|..++|||   +|-+|++++.||.-.+-+=++                                       
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t---------------------------------------   48 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT---------------------------------------   48 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC---------------------------------------
Confidence            45679999999999986   788999999999776655444                                       


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                            +.-+.++.||.+.|+....+.+- +.++++.|-+.+|||.-+|..+..|.|..-|.+++|+. +.++|++|+.+
T Consensus        49 ------gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~-ds~~lltgg~e  121 (334)
T KOG0278|consen   49 ------GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQ-DSNYLLTGGQE  121 (334)
T ss_pred             ------CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecc-cchhhhccchH
Confidence                  23478899999999999988776 77899999999999999999999999999999999999 99999999999


Q ss_pred             CcEEEEeCCCC--eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          331 GKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       331 g~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      ..+||||++..  .+..+.+|.+.|..+-|....+.+++++.|++||+||.+++.... .+.+.       .+|+++.++
T Consensus       122 kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~-sL~~~-------s~VtSlEvs  193 (334)
T KOG0278|consen  122 KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQ-SLEFN-------SPVTSLEVS  193 (334)
T ss_pred             HHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEE-EEecC-------CCCcceeec
Confidence            99999999764  456688999999999999999999999999999999999987643 33332       689999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccce
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC  488 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  488 (626)
                      ++|  .+++....+.|.+||..... .++...-...|.+.+.+|+...+++|++|..++.||+.++.....         
T Consensus       194 ~dG--~ilTia~gssV~Fwdaksf~-~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~---------  261 (334)
T KOG0278|consen  194 QDG--RILTIAYGSSVKFWDAKSFG-LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS---------  261 (334)
T ss_pred             cCC--CEEEEecCceeEEecccccc-ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee---------
Confidence            997  67888888999999976432 222222457899999999999999999999999999998621100         


Q ss_pred             eeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909          489 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  568 (626)
Q Consensus       489 ~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~  568 (626)
                                   +                              ..++-.+|..+.|||||...++++. ||+|++|...
T Consensus       262 -------------~------------------------------nkgh~gpVhcVrFSPdGE~yAsGSE-DGTirlWQt~  297 (334)
T KOG0278|consen  262 -------------Y------------------------------NKGHFGPVHCVRFSPDGELYASGSE-DGTIRLWQTT  297 (334)
T ss_pred             -------------c------------------------------ccCCCCceEEEEECCCCceeeccCC-CceEEEEEec
Confidence                         0                              1234445777788888888888888 8999999777


Q ss_pred             cC
Q 006909          569 ID  570 (626)
Q Consensus       569 ~~  570 (626)
                      .+
T Consensus       298 ~~  299 (334)
T KOG0278|consen  298 PG  299 (334)
T ss_pred             CC
Confidence            65

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=4e-26  Score=257.78  Aligned_cols=244  Identities=16%  Similarity=0.234  Sum_probs=198.4

Q ss_pred             ccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          180 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       180 H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      +...|.+++|+|. +.+||+|+.||+|+|||+.+                                             .
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~---------------------------------------------~  565 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR---------------------------------------------S  565 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC---------------------------------------------C
Confidence            3467899999874 78999999999999999986                                             3


Q ss_pred             CCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      ..+..+.+|...|++++|+| ++ +|++|+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.||.|++|
T Consensus       566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iw  645 (793)
T PLN00181        566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYY  645 (793)
T ss_pred             eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence            34667789999999999996 55 89999999999999999999988888778899999976579999999999999999


Q ss_pred             eCCCCe--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          337 GVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       337 d~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      |++...  ...+.+|...|.++.|. ++.++++++.|++|++||+.......... .......|...+..+.|+|++ .+
T Consensus       646 D~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~-~l~~~~gh~~~i~~v~~s~~~-~~  722 (793)
T PLN00181        646 DLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET-PLHSFMGHTNVKNFVGLSVSD-GY  722 (793)
T ss_pred             ECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc-ceEEEcCCCCCeeEEEEcCCC-CE
Confidence            998754  34567899999999997 78899999999999999997532110000 000123345788999999997 79


Q ss_pred             EEEEeCCCcEEEEeCCccee--eee-----------ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          415 IMITSEDSKLRILDGVDVIH--KFK-----------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~~~~--~~~-----------~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      |++|+.|+.|++|+......  .+.           ...+...|.+++|+|++.+|++|+.||.|+||++
T Consensus       723 lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        723 IATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            99999999999999653211  111           1224457999999999999999999999999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=5.1e-27  Score=227.67  Aligned_cols=255  Identities=21%  Similarity=0.344  Sum_probs=198.0

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      -.|++|+..|.++++.|.|..|+|||.|.+|++||+..+......|                                  
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~f----------------------------------  206 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSF----------------------------------  206 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhh----------------------------------
Confidence            3477999999999999999999999999999999998754432211                                  


Q ss_pred             cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe-------------ecCCCCeEEEEEeeCC
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-------------FDHHNYVTCVQFNPID  320 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~-------------~~~~~~v~~~~~~p~~  320 (626)
                          .  .........|+++.|++.+ .|++.+.....+|+|-...+....             -+|...++|.+|+|.+
T Consensus       207 ----r--~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~  280 (641)
T KOG0772|consen  207 ----R--QLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN  280 (641)
T ss_pred             ----h--ccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc
Confidence                1  1112345679999999987 777777778899999765544332             2488899999999988


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCe----EEE---eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc
Q 006909          321 DNYFISGSIDGKVRIWGVCEKR----VVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  393 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~----~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~  393 (626)
                      .+.|++++.||++|+||+...+    ++.   ..+.+-++++++|+|+|+.||+|+.||.|.+|+..+.........   
T Consensus       281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v---  357 (641)
T KOG0772|consen  281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV---  357 (641)
T ss_pred             ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe---
Confidence            8899999999999999997532    222   123345789999999999999999999999999855433222111   


Q ss_pred             ccccC--CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCCCEEEEEeC------
Q 006909          394 RKKTS--GNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIGD------  462 (626)
Q Consensus       394 ~~~~~--~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~------  462 (626)
                       ...|  +..|+||.||++| ++|++-+.|+++++||+++   ++....+....-+-+.++|||+.++|++|+.      
T Consensus       358 -k~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~  435 (641)
T KOG0772|consen  358 -KDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT  435 (641)
T ss_pred             -eeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCC
Confidence             2223  3489999999998 8999999999999999885   4444555556667789999999999999864      


Q ss_pred             CccEEEEECCCC
Q 006909          463 DCRVYVWNYDEL  474 (626)
Q Consensus       463 dg~I~iwd~~~~  474 (626)
                      .|++++||..+.
T Consensus       436 ~g~L~f~d~~t~  447 (641)
T KOG0772|consen  436 AGTLFFFDRMTL  447 (641)
T ss_pred             CceEEEEeccce
Confidence            478999998775

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=9.9e-27  Score=225.01  Aligned_cols=248  Identities=21%  Similarity=0.365  Sum_probs=208.2

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ..+++.-.+..|.+++|-.||++||+|...|.|+|+|..+                                        
T Consensus        60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----------------------------------------   99 (487)
T KOG0310|consen   60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----------------------------------------   99 (487)
T ss_pred             hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----------------------------------------
Confidence            3444556778999999999999999999999999999654                                        


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                           ...+..+.+|+.+|..+.|+|.+  .|++|+.|+.+++||+.+......+ +|+++|.|.+|+|.++.+++||+.
T Consensus       100 -----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY  174 (487)
T KOG0310|consen  100 -----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY  174 (487)
T ss_pred             -----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence                 23467888999999999999965  7889999999999999988864344 599999999999988889999999


Q ss_pred             CCcEEEEeCCCC-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          330 DGKVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       330 dg~v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      ||+|++||++.. ..+....|..+|..+.+-|.|..+++++ ...+++||+.++......      ...|...|||+.+.
T Consensus       175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~------~~~H~KtVTcL~l~  247 (487)
T KOG0310|consen  175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTS------MFNHNKTVTCLRLA  247 (487)
T ss_pred             CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhh------hhcccceEEEEEee
Confidence            999999999987 6677889999999999999999888876 458999999966544331      22245799999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .++ ..|++++-|+.|++||+.+..... .....++|.+++.+|+++.++.|..||.+.+=+....
T Consensus       248 s~~-~rLlS~sLD~~VKVfd~t~~Kvv~-s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  248 SDS-TRLLSGSLDRHVKVFDTTNYKVVH-SWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             cCC-ceEeecccccceEEEEccceEEEE-eeecccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence            987 799999999999999966543333 3346789999999999999999999998887755443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.6e-25  Score=222.98  Aligned_cols=248  Identities=15%  Similarity=0.260  Sum_probs=203.2

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      -..+|++|+|+.+.+.||.+-.||.|-||++...                                            .-
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------------------------w~   59 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------------------------WF   59 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------------------------ce
Confidence            4678999999999999999999999999999862                                            22


Q ss_pred             CceeeccC-ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          260 PLQELHGH-KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       260 ~~~~~~~h-~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      ....+.++ ...|.+++|++.+.|++.+.+|.|.-||+.+++....+. ..+.|++++.+| .+..++.|+.||.+..++
T Consensus        60 ~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s  138 (691)
T KOG2048|consen   60 LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFS  138 (691)
T ss_pred             eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEe
Confidence            23445554 568999999998999999999999999999999988886 677999999999 889999999999888888


Q ss_pred             CCCCeEEE---eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCc
Q 006909          338 VCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       338 ~~~~~~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      ...+.+..   +...++.|.+++|+|++..++.|+.||.|++||...+..... .....+..+....-|.++.|-.++  
T Consensus       139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--  216 (691)
T KOG2048|consen  139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--  216 (691)
T ss_pred             cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--
Confidence            87777654   334468899999999999999999999999999988765442 222222222234567888888885  


Q ss_pred             EEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          414 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .|++|...|+|.+||.......-....|.+.|.+++.++++.++++++.|+.|.-+...+.
T Consensus       217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence            8999999999999997644333333348899999999999999999999999998887765

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=5.1e-27  Score=209.50  Aligned_cols=286  Identities=22%  Similarity=0.298  Sum_probs=219.2

Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      +.+.+|...|.+++|+-+| .|++|+.|+++.+|+++..+.....   +|.+.|-.++|+|..++.|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5677899999999999988 9999999999999999877555444   48889999999998999999999999999999


Q ss_pred             CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       338 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      .+.+++......+..-.-+.|+|+|.+++++..|..|.+.|.++.+.... ..+       ...+..++|+.++ .+++.
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-~~~-------~~e~ne~~w~~~n-d~Ffl  164 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-EQF-------KFEVNEISWNNSN-DLFFL  164 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh-hcc-------cceeeeeeecCCC-CEEEE
Confidence            99999888777777777899999999999999999999999988765432 111       1457778888765 67777


Q ss_pred             EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcE
Q 006909          418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS  497 (626)
Q Consensus       418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~  497 (626)
                      ....|+|.|..............|.....++.|+|+|+|+|+|+.|..+.+||++...            |+..      
T Consensus       165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi------------C~R~------  226 (313)
T KOG1407|consen  165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI------------CERC------  226 (313)
T ss_pred             ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh------------hhee------
Confidence            7778999999876655555555688999999999999999999999999999998741            1000      


Q ss_pred             EEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCC
Q 006909          498 VAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQD  577 (626)
Q Consensus       498 ~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~  577 (626)
                                                         +.-.+=+|..+.||.||++||+|+. |.-|-|=++++|.      
T Consensus       227 -----------------------------------isRldwpVRTlSFS~dg~~lASaSE-Dh~IDIA~vetGd------  264 (313)
T KOG1407|consen  227 -----------------------------------ISRLDWPVRTLSFSHDGRMLASASE-DHFIDIAEVETGD------  264 (313)
T ss_pred             -----------------------------------eccccCceEEEEeccCcceeeccCc-cceEEeEecccCC------
Confidence                                               1112224667778888888888888 6777777777772      


Q ss_pred             hhhHHHHhhhccCCccc--cccccccceEEEEecCCceE------eeeeecCcc
Q 006909          578 PQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMI------KTFHNYGLP  623 (626)
Q Consensus       578 ~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~I------rvw~~~g~p  623 (626)
                          +.-  -.++.+..  +++.| ...+||-|.+|..=      -..++||||
T Consensus       265 ----~~~--eI~~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  265 ----RVW--EIPCEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             ----eEE--EeeccCCceeEEecC-CCceeeEEecCCCCccccccceeEEecCC
Confidence                111  11222222  34445 46677777766322      445567777

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=6.2e-27  Score=221.57  Aligned_cols=248  Identities=19%  Similarity=0.260  Sum_probs=213.1

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      .....+|.|-.++|++++|.++++++++++.|+.+++|++.+                                      
T Consensus       209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--------------------------------------  250 (459)
T KOG0288|consen  209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS--------------------------------------  250 (459)
T ss_pred             hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc--------------------------------------
Confidence            345678889999999999999999999999999999999987                                      


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                             ....+++.||+..|+++.|.... .+++|+.|.+|++||+....|.+++-....+..|..+   ...+++|-.
T Consensus       251 -------~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~  320 (459)
T KOG0288|consen  251 -------LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHF  320 (459)
T ss_pred             -------hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeeccc
Confidence                   45578999999999999998766 5999999999999999999999998878888888875   478999999


Q ss_pred             CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      |++|++||.++..........+.|+++..+++|..+.+++.|.++.+.|+++...... ....+.+.+  ...+.+.|||
T Consensus       321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~-~sA~g~k~a--sDwtrvvfSp  397 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT-FSAEGFKCA--SDWTRVVFSP  397 (459)
T ss_pred             ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEE-eeccccccc--cccceeEECC
Confidence            9999999999999988888888999999999999999999999999999998875432 333332222  3489999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcceeeee--ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          410 DESQRIMITSEDSKLRILDGVDVIHKFK--GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      ++ .|+++|+.||.|+||++.+......  .......|++++|+|.|.++++++.++.+.+|.
T Consensus       398 d~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  398 DG-SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CC-ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            98 7999999999999999875444443  333333699999999999999999999999993

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=3e-26  Score=205.25  Aligned_cols=232  Identities=16%  Similarity=0.205  Sum_probs=190.7

Q ss_pred             eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909          263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  340 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~  340 (626)
                      .+.||..+++.+.++.+| +|++|+.|.++.||-..+|+.+.++ +|.+.|+|+..+. +..++++|+.|.++++||+.+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence            467899999999999988 9999999999999999899999988 5999999999998 899999999999999999999


Q ss_pred             CeEEEeccCCCCeEEEEEeeCCCEEEEEec-----CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          341 KRVVDWADVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       341 ~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      |+++.......+|..+.|+++|++++..+.     .+.|.++|++........-........+...++.+.|.|-+ ..|
T Consensus        84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~i  162 (327)
T KOG0643|consen   84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETI  162 (327)
T ss_pred             CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-CEE
Confidence            999999999999999999999998887764     36899999985432111000000122334789999999997 799


Q ss_pred             EEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccC
Q 006909          416 MITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE  494 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  494 (626)
                      ++|..||.|.+||.++....... ..|...|+.+.+++|..++++++.|.+-++||..+...........+..+.+++|-
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~  242 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPL  242 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccc
Confidence            99999999999999876444433 55788999999999999999999999999999998755544445555555566654


Q ss_pred             Cc
Q 006909          495 GV  496 (626)
Q Consensus       495 g~  496 (626)
                      ..
T Consensus       243 ~d  244 (327)
T KOG0643|consen  243 LD  244 (327)
T ss_pred             cc
Confidence            33

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=209.80  Aligned_cols=253  Identities=18%  Similarity=0.308  Sum_probs=215.2

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      .+.+.++|.||++.|+.++.......+.+++.|.+.+||.+++                                     
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-------------------------------------  179 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-------------------------------------  179 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-------------------------------------
Confidence            4567888999999999999988778999999999999999998                                     


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEecc------CCC-----------------------
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV------GCN-----------------------  299 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~------~~~-----------------------  299 (626)
                              +.++.++.||.+.|++++|++++ ++++++.|++.+||..      ..+                       
T Consensus       180 --------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d  251 (481)
T KOG0300|consen  180 --------GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD  251 (481)
T ss_pred             --------ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence                    45678899999999999999998 7889999999999962      110                       


Q ss_pred             -----------eeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEE
Q 006909          300 -----------QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFI  366 (626)
Q Consensus       300 -----------~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~  366 (626)
                                 .++..+ +|...|.+..|.. .++.+++++.|.+..+||+.+++++. +.+|....+.++-+|..++++
T Consensus       252 ~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVv  330 (481)
T KOG0300|consen  252 SSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVV  330 (481)
T ss_pred             cccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEE
Confidence                       011122 4778899999998 99999999999999999999999876 678999999999999999999


Q ss_pred             EEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeE
Q 006909          367 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM  446 (626)
Q Consensus       367 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~  446 (626)
                      +++.|.+.++||++..-...  ..    ..+|...|+++.|..+.  .+++|+.|.+|+|||+++....+.......+++
T Consensus       331 TsSrDtTFRLWDFReaI~sV--~V----FQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N  402 (481)
T KOG0300|consen  331 TSSRDTTFRLWDFREAIQSV--AV----FQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN  402 (481)
T ss_pred             EeccCceeEeccchhhccee--ee----ecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence            99999999999998433222  22    33456899999999984  899999999999999988776666665678999


Q ss_pred             EEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909          447 SASFTTTGKHIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       447 ~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      .++.+..++.|+.--++..|++||++....
T Consensus       403 Rvavs~g~~iIAiPhDNRqvRlfDlnG~Rl  432 (481)
T KOG0300|consen  403 RVAVSKGHPIIAIPHDNRQVRLFDLNGNRL  432 (481)
T ss_pred             eeEeecCCceEEeccCCceEEEEecCCCcc
Confidence            999998888999999999999999998743

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=5e-26  Score=213.33  Aligned_cols=264  Identities=20%  Similarity=0.317  Sum_probs=213.6

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      -|.+.|.++...  +++++||+.||.++|||...                                              
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G----------------------------------------------  134 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG----------------------------------------------  134 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCC----------------------------------------------
Confidence            499999999987  77999999999999999863                                              


Q ss_pred             CCceeeccCccceEEEEEcC-C---CeEEEEeCCCcEEEeccCCCeeeEee-----cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909          259 SPLQELHGHKGDVLDLAWSN-S---NYLLSCSMDKTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~-~---~~l~s~s~d~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                      +....+.||.++|.+++|.. +   ..|++++.|.++++|.++.+......     +|...|-++...+ ++..+++|+.
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~  213 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSW  213 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecc
Confidence            56788899999999999863 3   26999999999999998876543221     6999999999999 9999999999


Q ss_pred             CCcEEEEeCCCC--------------------------eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc
Q 006909          330 DGKVRIWGVCEK--------------------------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  383 (626)
Q Consensus       330 dg~v~iwd~~~~--------------------------~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~  383 (626)
                      |.+|.||+....                          .++.+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.
T Consensus       214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence            999999993210                          1445778999999999988 6689999999999999999887


Q ss_pred             eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCC-CEEEE
Q 006909          384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG-KHIIS  459 (626)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g-~~l~s  459 (626)
                      ......   +     ...+.++.++|.. .+|++|+.|..|++||.++   ........+|...|.++.|+|.. .+|++
T Consensus       293 ~~~~~~---~-----~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S  363 (423)
T KOG0313|consen  293 LKSTLT---T-----NKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS  363 (423)
T ss_pred             ceeeee---c-----CcceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence            654322   1     2689999999985 8999999999999999773   23344445688999999999976 45789


Q ss_pred             EeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccc
Q 006909          460 IGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK  510 (626)
Q Consensus       460 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~  510 (626)
                      |+.|+++++||+++...+...        + -.++..++++.|+..+..+.
T Consensus       364 ~S~D~t~klWDvRS~k~plyd--------I-~~h~DKvl~vdW~~~~~IvS  405 (423)
T KOG0313|consen  364 GSYDNTVKLWDVRSTKAPLYD--------I-AGHNDKVLSVDWNEGGLIVS  405 (423)
T ss_pred             EecCCeEEEEEeccCCCccee--------e-ccCCceEEEEeccCCceEEe
Confidence            999999999999985323222        1 12367789999998765543

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=3.9e-25  Score=231.23  Aligned_cols=256  Identities=17%  Similarity=0.205  Sum_probs=190.3

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      |-..|+....++++..+++++.+.....|+...+... ......+.                              . ..
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v-~~~~~~G~------------------------------~-~~   66 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV-LKHTDYGK------------------------------L-AS   66 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEE-eecccccc------------------------------C-CC
Confidence            4456777788889888888888998899987653210 00000000                              0 11


Q ss_pred             CceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCe-------eeEee-cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909          260 PLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~-------~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                      ....+.+|.+.|++++|+| ++ +|++|+.|++|++||+.++.       ++..+ .|...|.+++|+|..+++|++|+.
T Consensus        67 ~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~  146 (493)
T PTZ00421         67 NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA  146 (493)
T ss_pred             CCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence            1234779999999999999 55 89999999999999997652       34444 588999999999944579999999


Q ss_pred             CCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          330 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      |++|+|||+.+++... +..|...|.+++|+|+|..|++++.|+.|++||++++.... .+..+.     ...+..+.|.
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~-tl~~H~-----~~~~~~~~w~  220 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS-SVEAHA-----SAKSQRCLWA  220 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE-EEecCC-----CCcceEEEEc
Confidence            9999999999877654 55688999999999999999999999999999999876532 222222     1334567888


Q ss_pred             CCCCcEEEEEe----CCCcEEEEeCCcceeeeee--cCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909          409 RDESQRIMITS----EDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       409 ~~~~~~l~~~s----~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~  474 (626)
                      +++ ..+++++    .|+.|++||+++....+..  ......+....|++++++|++++ .|+.|++||+.++
T Consensus       221 ~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        221 KRK-DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             CCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            886 4555543    4799999998754333322  22334566678999999999887 4999999999876

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=2.4e-25  Score=232.74  Aligned_cols=234  Identities=18%  Similarity=0.251  Sum_probs=181.7

Q ss_pred             ccccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          176 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       176 ~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      .+.+|++.|++++|+| ++++||+|+.||+|+|||+.+.....                                     
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-------------------------------------  112 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-------------------------------------  112 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-------------------------------------
Confidence            4679999999999999 88999999999999999997631100                                     


Q ss_pred             cccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                       ....++..+.+|...|.+++|+|++  +|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|+
T Consensus       113 -~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg  190 (493)
T PTZ00421        113 -NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDK  190 (493)
T ss_pred             -ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCC
Confidence             0124567889999999999999963  89999999999999999998888875 888999999999 999999999999


Q ss_pred             cEEEEeCCCCeEEE-eccCCCC-eEEEEEeeCCCEEEEEe----cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          332 KVRIWGVCEKRVVD-WADVRDV-ISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       332 ~v~iwd~~~~~~~~-~~~~~~~-i~~i~~sp~g~~l~~g~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      +|++||+++++.+. ...|... +..+.|.+++..+++++    .|+.|++||++.............     ...+...
T Consensus       191 ~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-----~~~~~~~  265 (493)
T PTZ00421        191 KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-----SSALFIP  265 (493)
T ss_pred             EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC-----CCceEEE
Confidence            99999999887654 4456543 45678889888877654    478999999987654433222221     2456667


Q ss_pred             EEcCCCCcEEEEEe-CCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcCCC
Q 006909          406 QFSRDESQRIMITS-EDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTG  454 (626)
Q Consensus       406 ~~s~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g  454 (626)
                      .|++++ .++++++ .|+.|++||+.+....+.. .....++..++|.|.-
T Consensus       266 ~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        266 FFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             EEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            789997 5677666 6999999998754433222 2245567888888853

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.5e-27  Score=220.66  Aligned_cols=247  Identities=19%  Similarity=0.320  Sum_probs=191.3

Q ss_pred             ccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          174 SQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ...|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...                                       
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---------------------------------------   99 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---------------------------------------   99 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---------------------------------------
Confidence            34468999999999999987 68999999999999999873                                       


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEE--------------------------------------Ee
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR--------------------------------------MW  294 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~--------------------------------------iw  294 (626)
                            .+..++..|.+.|..|++.. +.+++++.|++|+                                      ||
T Consensus       100 ------~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IW  172 (433)
T KOG0268|consen  100 ------ECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIW  172 (433)
T ss_pred             ------hhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeec
Confidence                  23344444555555555443 3444444555444                                      45


Q ss_pred             ccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCc
Q 006909          295 QVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT  373 (626)
Q Consensus       295 d~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~  373 (626)
                      |.....++..+. ....|.++.|+|....+|+++..|+.|.+||++++.++...-..-.-+.|+|+|.+-.+++|+.|..
T Consensus       173 D~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~n  252 (433)
T KOG0268|consen  173 DEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHN  252 (433)
T ss_pred             ccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeecccccc
Confidence            544444455554 4456899999998888999999999999999999988877767777889999999999999999999


Q ss_pred             EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcC
Q 006909          374 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTT  452 (626)
Q Consensus       374 i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp  452 (626)
                      ++.||++.-..+...      ...|...|.++.|+|.| +-+++|+.|.+|+||........-.. ......|.++.||.
T Consensus       253 lY~~DmR~l~~p~~v------~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~  325 (433)
T KOG0268|consen  253 LYTYDMRNLSRPLNV------HKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM  325 (433)
T ss_pred             ceehhhhhhcccchh------hcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec
Confidence            999999876655432      23456899999999998 78999999999999997643322111 11346799999999


Q ss_pred             CCCEEEEEeCCccEEEEECCC
Q 006909          453 TGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       453 ~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      |.+||++||+|+.|++|....
T Consensus       326 Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  326 DSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             cccEEEecCCCcceeeeecch
Confidence            999999999999999998764

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=5e-25  Score=231.18  Aligned_cols=240  Identities=16%  Similarity=0.225  Sum_probs=181.5

Q ss_pred             cccccccccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          173 TSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      ....+.+|.+.|++++|+|+ +.+||||+.||+|+|||+.+......                                 
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---------------------------------  112 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---------------------------------  112 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---------------------------------
Confidence            34567899999999999997 78999999999999999975311000                                 


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                          ....++..+.+|...|.+++|+|++  .|++++.|++|+|||+.+++.+..+.|...|.+++|+| ++.+|++++.
T Consensus       113 ----~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~  187 (568)
T PTZ00420        113 ----EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCV  187 (568)
T ss_pred             ----ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEec
Confidence                0013456678999999999999986  46799999999999999998887777888999999999 9999999999


Q ss_pred             CCcEEEEeCCCCeEEE-eccCCCCeEEE-----EEeeCCCEEEEEecCC----cEEEEEcCCCceeeeEEeeccccccCC
Q 006909          330 DGKVRIWGVCEKRVVD-WADVRDVISAI-----CYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKKTSG  399 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~-~~~~~~~i~~i-----~~sp~g~~l~~g~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~  399 (626)
                      |+.|+|||+++++.+. +..|.+.+.+.     .|++++.+|++++.++    .|++||++....+.........    .
T Consensus       188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~----~  263 (568)
T PTZ00420        188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA----S  263 (568)
T ss_pred             CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC----c
Confidence            9999999999987654 55676654332     3458889999988774    7999999965444433333221    2


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCC
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGK  455 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~  455 (626)
                      +.+...-..++| .++++|+.|+.|++|++... ...+....+..++.+++|.|...
T Consensus       264 ~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        264 APLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             cceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence            333333334444 78999999999999997643 22333334667888999999653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.1e-26  Score=226.72  Aligned_cols=247  Identities=20%  Similarity=0.397  Sum_probs=203.6

Q ss_pred             ccCcEE---EEEEc-CCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          180 HKGCIW---TLKFS-PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       180 H~~~V~---~l~fs-pdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      |...|.   .+..+ |.++||.|||.||.|++|++.......                                      
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~--------------------------------------   61 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP--------------------------------------   61 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc--------------------------------------
Confidence            445555   44444 467799999999999999987521100                                      


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC--eeeEeec-CCCCeEEEEE-eeCCCCEEEEEeCC
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNYVTCVQF-NPIDDNYFISGSID  330 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~--~~~~~~~-~~~~v~~~~~-~p~~~~~l~s~s~d  330 (626)
                       +......++.|...|++++...++ .|+++|.|-+|++|+...+  -|+.+++ |.++|.|+++ .+ +...+|+|+.|
T Consensus        62 -s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD  139 (735)
T KOG0308|consen   62 -STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLD  139 (735)
T ss_pred             -ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCC
Confidence             012366788899999999998877 8999999999999999877  5666675 9999999999 55 88999999999


Q ss_pred             CcEEEEeCCCCeE--E---------Eec-cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccC
Q 006909          331 GKVRIWGVCEKRV--V---------DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  398 (626)
Q Consensus       331 g~v~iwd~~~~~~--~---------~~~-~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  398 (626)
                      +.|.+||+.++..  +         ... ++...|++++.++.|..++.|+..+.+++||.++......       .++|
T Consensus       140 ~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk-------LrGH  212 (735)
T KOG0308|consen  140 RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK-------LRGH  212 (735)
T ss_pred             ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee-------eecc
Confidence            9999999997622  1         122 6788999999999999999999999999999998766443       2345


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ...|..+..++|| ..+++++.||+|++||+...........|...|.++..+|+-.++++|+.||.|+.=|+.+.
T Consensus       213 TdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  213 TDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            6899999999998 79999999999999999865555555558888999999999999999999999999999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=9.8e-27  Score=206.21  Aligned_cols=244  Identities=18%  Similarity=0.288  Sum_probs=206.4

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .-++.||+++|++..+..+....|+++.|-+-+|||..++                                        
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg----------------------------------------   91 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG----------------------------------------   91 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh----------------------------------------
Confidence            3467899999999999999989999999999999998874                                        


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee-eEee-cCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LNVF-DHHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                           ..++.+. |..-|..++|+.|. +|++|+.++.++|+|++..+. ...+ +|++.|..+.|.. ..+.|++.+.|
T Consensus        92 -----delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd  164 (334)
T KOG0278|consen   92 -----DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADD  164 (334)
T ss_pred             -----hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccC
Confidence                 3345553 88899999999876 999999999999999976433 2333 5999999999998 88889998999


Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      ++||+||.+++..+.....+.+|+++.++++|++|.++ ..+.|.+||..+..... ...+       ...|.+..++|+
T Consensus       165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lK-s~k~-------P~nV~SASL~P~  235 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLK-SYKM-------PCNVESASLHPK  235 (334)
T ss_pred             CceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEecccccccee-eccC-------ccccccccccCC
Confidence            99999999999999999999999999999999876655 56789999998766532 2222       267899999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      . ..+++|+.|..++.||..+....-. ...|.++|.++.|+|+|...++||+||+|++|....+
T Consensus       236 k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  236 K-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             C-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence            6 7999999999999999775544433 2558899999999999999999999999999998764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.9e-25  Score=214.58  Aligned_cols=292  Identities=19%  Similarity=0.275  Sum_probs=227.7

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .+.+..|.-+|+||+++|+.++.++++.||+|.=|++.++......+..+                            .+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~----------------------------ev  186 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD----------------------------EV  186 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc----------------------------hh
Confidence            45667899999999999999999999999999999998865321111000                            00


Q ss_pred             ccccCCCceee-ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          254 FQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       254 ~~~~~~~~~~~-~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                      ....+.+...- .+|...|.+++.++|| +|++|+.|..|.||+..+.+.++.+ .|.+.|.+++|-. ..+.+++++.|
T Consensus       187 ~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~D  265 (479)
T KOG0299|consen  187 LKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASAD  265 (479)
T ss_pred             hhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecC
Confidence            00012222222 4899999999999998 9999999999999999999999997 5999999999998 88899999999


Q ss_pred             CcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          331 GKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       331 g~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      ++|++|++.....+ .+.+|++.|..|....-++.+-+|+.|+++++|++.......        ..++.+.+-|++|-.
T Consensus       266 rsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli--------frg~~~sidcv~~In  337 (479)
T KOG0299|consen  266 RSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI--------FRGGEGSIDCVAFIN  337 (479)
T ss_pred             CceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceee--------eeCCCCCeeeEEEec
Confidence            99999999876544 578999999999999889888899999999999995443322        223357899999998


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcceeeeee--c----------CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909          410 DESQRIMITSEDSKLRILDGVDVIHKFKG--L----------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  477 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--~----------~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~  477 (626)
                      +  ..+++|+.+|.|.+|++.+....+..  .          .+..+|++++..|...++++|+.+|.|++|.+..+...
T Consensus       338 ~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  338 D--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA  415 (479)
T ss_pred             c--cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence            8  48999999999999997643333321  1          12238999999999999999999999999999987321


Q ss_pred             CCCccCCccceeeeccCCcEEEEecCCCCccccc
Q 006909          478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS  511 (626)
Q Consensus       478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~  511 (626)
                      .       ......+-.|.+.+++|+++|..++.
T Consensus       416 i-------~~l~~ls~~GfVNsl~f~~sgk~iva  442 (479)
T KOG0299|consen  416 I-------NLLYSLSLVGFVNSLAFSNSGKRIVA  442 (479)
T ss_pred             c-------ceeeecccccEEEEEEEccCCCEEEE
Confidence            1       11122334677888888888885554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=1.9e-25  Score=224.17  Aligned_cols=433  Identities=18%  Similarity=0.225  Sum_probs=290.1

Q ss_pred             cccccccccCcEEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCcceeee-----------ecCCCCC-ccCCCCCeeee
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKS-----------FTDDGGF-GSNAKEGKIKF  237 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~---~Latgs~Dg~i~iwd~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~  237 (626)
                      ...++.||.++|+|+.|-|+.+   ++++|+.||.|++|.+......++.           +...... .+.++++.+..
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v  125 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSV  125 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEE
Confidence            4567889999999999999887   8999999999999998832221111           1111000 01123344444


Q ss_pred             cCCCCCCce-----------------eecC-C-----------ccccc------cCCCceeeccCccceEEEEEcCC---
Q 006909          238 GKKKSSHVP-----------------VVIP-D-----------EVFQI------EESPLQELHGHKGDVLDLAWSNS---  279 (626)
Q Consensus       238 ~~~~~~~~~-----------------~~~~-~-----------~~~~~------~~~~~~~~~~h~~~V~~l~~s~~---  279 (626)
                      +...+....                 ...+ .           ....+      ....+..+.||...|.+++|...   
T Consensus       126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~  205 (764)
T KOG1063|consen  126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGD  205 (764)
T ss_pred             eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCC
Confidence            433221100                 0000 0           00000      12456788999999999999842   


Q ss_pred             C-eEEEEeCCCcEEEeccCCCe---------------------ee---E--------eecCCCCeEEEEEeeCCCCEEEE
Q 006909          280 N-YLLSCSMDKTVRMWQVGCNQ---------------------CL---N--------VFDHHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       280 ~-~l~s~s~d~~v~iwd~~~~~---------------------~~---~--------~~~~~~~v~~~~~~p~~~~~l~s  326 (626)
                      . +|+|+|.|..||||.+.-+.                     +.   .        ..+|.++|.++.|+| .+..|++
T Consensus       206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLS  284 (764)
T KOG1063|consen  206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLS  284 (764)
T ss_pred             cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhhee
Confidence            2 79999999999999763221                     11   1        015999999999999 8889999


Q ss_pred             EeCCCcEEEEeCCCCe-----EEE---eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccC
Q 006909          327 GSIDGKVRIWGVCEKR-----VVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  398 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~-----~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  398 (626)
                      ++.|.++.+|...+..     .+.   .-+.........|+|+++.+++-+..|..++|......    .+.......+|
T Consensus       285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~----~w~~~~~iSGH  360 (764)
T KOG1063|consen  285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT----FWTQEPVISGH  360 (764)
T ss_pred             cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc----ceeeccccccc
Confidence            9999999999765541     111   22334567889999999999999999999999833222    22233335567


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC----cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          399 GNKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ...|++++|.|.| .+|++.+.|.+-|++-..    +....-+...|.-.+++++|-+..-.+++|.+...+++|+....
T Consensus       361 ~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~  439 (764)
T KOG1063|consen  361 VDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKS  439 (764)
T ss_pred             cccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHH
Confidence            7999999999998 799999999999998633    11122222446778899999876667788888899999997431


Q ss_pred             -----------------------CCCCCC-ccC---------------------Cccceeeec-----------------
Q 006909          475 -----------------------CFPSSK-QKN---------------------SVRSCEHFF-----------------  492 (626)
Q Consensus       475 -----------------------~~~~~~-~~~---------------------~~~~~~~~~-----------------  492 (626)
                                             ..|... ..+                     ....+..+.                 
T Consensus       440 fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~  519 (764)
T KOG1063|consen  440 FVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVH  519 (764)
T ss_pred             HHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhH
Confidence                                   000000 000                     000011111                 


Q ss_pred             ----cCCcEEEEecCCCCcccccccCCCccc--cCccccccCCC--CcccCCCcccCCccccCCCCcccccCCCCCCCCC
Q 006909          493 ----SEGVSVAVQWPGIGTEQKSLCSSSLRD--CSQKWDNLETA--PWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPL  564 (626)
Q Consensus       493 ----~~g~~~av~~s~~~~~l~~~~~~~~~~--~~~~w~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~v  564 (626)
                          +.-.+.+++-+|+|..+++.+......  .+.+|....-.  ..+..|.-.|+.++|||||++|++++. |+++.+
T Consensus       520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-DRt~sl  598 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-DRTVSL  598 (764)
T ss_pred             HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-CceEEe
Confidence                122467888899999999887765432  36666664322  246778888999999999999999999 899999


Q ss_pred             CCcccCCCCCCCChhhHHHHhhhccCCcccc-----ccccccceEEEEecCCceEeeeeecCcc
Q 006909          565 WDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR-----AISATWGLVIVTAGCDGMIKTFHNYGLP  623 (626)
Q Consensus       565 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~dg~~ivt~g~Dg~Irvw~~~g~p  623 (626)
                      |......          .....+.....|..     .++| ++.++||||+|.+|++|...-+|
T Consensus       599 ~~~~~~~----------~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~  651 (764)
T KOG1063|consen  599 YEVQEDI----------KDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLR  651 (764)
T ss_pred             eeeeccc----------chhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCch
Confidence            9886653          11122333555554     2334 88999999999999999987665

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1.7e-24  Score=227.18  Aligned_cols=207  Identities=17%  Similarity=0.241  Sum_probs=159.0

Q ss_pred             CCceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCe--------eeEee-cCCCCeEEEEEeeCCCC-EEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ--------CLNVF-DHHNYVTCVQFNPIDDN-YFIS  326 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~--------~~~~~-~~~~~v~~~~~~p~~~~-~l~s  326 (626)
                      .++..+.+|.+.|.+++|+|+ + +|++|+.|++|+|||+.++.        ++..+ .|...|.+++|+| ++. +|++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaS  143 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCS  143 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEE
Confidence            456788899999999999996 3 89999999999999997542        22233 4889999999999 665 5679


Q ss_pred             EeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe----
Q 006909          327 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI----  402 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i----  402 (626)
                      ++.|++|++||+++++......+...|.+++|+|+|..|++++.|+.|++||++++.... .+..|      .+.+    
T Consensus       144 gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~-tl~gH------~g~~~s~~  216 (568)
T PTZ00420        144 SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS-SFHIH------DGGKNTKN  216 (568)
T ss_pred             EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE-EEecc------cCCceeEE
Confidence            999999999999988766555567889999999999999999999999999999876543 22222      2332    


Q ss_pred             -EEEEEcCCCCcEEEEEeCCC----cEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          403 -TGIQFSRDESQRIMITSEDS----KLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       403 -~~l~~s~~~~~~l~~~s~dg----~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                       ....|++++ .+|++++.|+    +|+|||+++   ++..+....+.+.+......++|.++++|+.|++|++|++..+
T Consensus       217 v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        217 IWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence             223456776 5788877664    799999874   3334444333444444445667999999999999999999765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.6e-25  Score=225.30  Aligned_cols=240  Identities=22%  Similarity=0.363  Sum_probs=202.3

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      +...|+++.|+++|.+||+|..+|.|.|||..+                                             ..
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~---------------------------------------------~k  250 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE---------------------------------------------QK  250 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhh---------------------------------------------cc
Confidence            488999999999999999999999999999987                                             34


Q ss_pred             Cceeecc-CccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEe-e-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          260 PLQELHG-HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       260 ~~~~~~~-h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~-~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      .+..+.+ |...|-+++|. ...+.+|+.|+.|..+|++..+.... + .|...|..+.|++ ++.++++|+.|+.+.||
T Consensus       251 ~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iw  328 (484)
T KOG0305|consen  251 KTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIW  328 (484)
T ss_pred             ccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEec
Confidence            4566666 99999999998 45899999999999999987766554 4 4899999999999 99999999999999999


Q ss_pred             eCCC-CeEEEeccCCCCeEEEEEee-CCCEEEEE--ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          337 GVCE-KRVVDWADVRDVISAICYIP-DGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       337 d~~~-~~~~~~~~~~~~i~~i~~sp-~g~~l~~g--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      |... .....+..|...|.+++|+| ....||+|  +.|+.|++||..++..... +       ..+..|+++.|++...
T Consensus       329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-v-------dtgsQVcsL~Wsk~~k  400 (484)
T KOG0305|consen  329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-V-------DTGSQVCSLIWSKKYK  400 (484)
T ss_pred             cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc-c-------ccCCceeeEEEcCCCC
Confidence            9955 45667889999999999999 45677775  4689999999997765432 1       1237899999999974


Q ss_pred             cEEEE-EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          413 QRIMI-TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       413 ~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .++.+ |..++.|.||+...........+|...|..++++|||..|++|+.|.++++|++-+.
T Consensus       401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            44443 345689999998766666666669999999999999999999999999999999774

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=5.5e-25  Score=209.56  Aligned_cols=237  Identities=19%  Similarity=0.298  Sum_probs=202.6

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      -.|+++...|....++||+.|..+.++|..+                                             ++.+
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s---------------------------------------------~q~l  254 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS---------------------------------------------NQIL  254 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecch---------------------------------------------hhhh
Confidence            5788999988878999999999999999886                                             5668


Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  339 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~  339 (626)
                      ..+.||...|+.+.++|+. .+++++.|..|+||......+.... .|..+|+.+..+| ++.||++++.|++..+.|++
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~  333 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDIS  333 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEcc
Confidence            8999999999999999987 8899999999999999766655544 4999999999999 99999999999999999999


Q ss_pred             CCeEEEeccCC---CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          340 EKRVVDWADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       340 ~~~~~~~~~~~---~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      ++.......+.   -.+++.+|+|||..|.+|+.||.++|||+.......       ...+|.++|..++|+.+| .+|+
T Consensus       334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a-------~Fpght~~vk~i~FsENG-Y~La  405 (506)
T KOG0289|consen  334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA-------KFPGHTGPVKAISFSENG-YWLA  405 (506)
T ss_pred             CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc-------cCCCCCCceeEEEeccCc-eEEE
Confidence            99887655553   448999999999999999999999999998876321       244567999999999998 8999


Q ss_pred             EEeCCCcEEEEeCCcce--eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          417 ITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      +++.|+.|++||+++..  .++... ....+.+++|.+.|.+|+.++.|=.|++++-.+
T Consensus       406 t~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  406 TAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT  463 (506)
T ss_pred             EEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence            99999999999998543  344443 233799999999999999998887777777443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.7e-25  Score=198.97  Aligned_cols=278  Identities=15%  Similarity=0.167  Sum_probs=208.8

Q ss_pred             EEEEEcC--CCeEEEE-------eCCCcEEEeccCCCeeeE---eecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909          272 LDLAWSN--SNYLLSC-------SMDKTVRMWQVGCNQCLN---VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  339 (626)
Q Consensus       272 ~~l~~s~--~~~l~s~-------s~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~  339 (626)
                      .++.|||  .++|+.+       ...|++.|.++...+-+.   .+.-.+.+..++|++...+.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            5678887  4544433       235889999986444443   445778899999999888999999999999999965


Q ss_pred             C--CeEEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          340 E--KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       340 ~--~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      .  +.+..+..|...|.++.|++ +++.+++++-|++|++|+.........       ..+|...|...+|+|.-+..++
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-------f~gh~~~Iy~a~~sp~~~nlfa  164 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT-------FNGHNSCIYQAAFSPHIPNLFA  164 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe-------ecCCccEEEEEecCCCCCCeEE
Confidence            3  45666889999999999998 566788899999999999876554322       3345689999999998889999


Q ss_pred             EEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCC
Q 006909          417 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG  495 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g  495 (626)
                      +++.|+++++||++..-.......|...+.++.|+. +.+.|+||+.|+.|++||+.+...|...               
T Consensus       165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e---------------  229 (311)
T KOG0277|consen  165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE---------------  229 (311)
T ss_pred             EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee---------------
Confidence            999999999999885544444555888999999986 5678899999999999999975322000               


Q ss_pred             cEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCC-cccccCCCCCCCCCCCcccCCCCC
Q 006909          496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGP-CRGSATWPAEKLPLWDVTIDSDGY  574 (626)
Q Consensus       496 ~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~~~~d~~i~vwd~~~~~~~~  574 (626)
                                                           +.+|+-.|..+.|||... .|+++++ |-++++||.....   
T Consensus       230 -------------------------------------L~gh~~AVRkvk~Sph~~~lLaSasY-DmT~riw~~~~~d---  268 (311)
T KOG0277|consen  230 -------------------------------------LNGHGLAVRKVKFSPHHASLLASASY-DMTVRIWDPERQD---  268 (311)
T ss_pred             -------------------------------------ecCCceEEEEEecCcchhhHhhhccc-cceEEecccccch---
Confidence                                                 122333345556666544 6888999 8999999988652   


Q ss_pred             CCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeee
Q 006909          575 CQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                             -++.....|..-+  ..++.-++..+|+.|||+.+.||+-
T Consensus       269 -------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  269 -------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -------hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence                   2233344444433  3455547889999999999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.3e-25  Score=222.68  Aligned_cols=246  Identities=19%  Similarity=0.270  Sum_probs=205.8

Q ss_pred             cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      ....+.+.+.-..-+|.+.+|-+--+++++|++|..|+||+..+                                    
T Consensus        43 etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt------------------------------------   86 (794)
T KOG0276|consen   43 ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT------------------------------------   86 (794)
T ss_pred             ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc------------------------------------
Confidence            33456666777788999999999889999999999999999998                                    


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC-eeeEee-cCCCCeEEEEEeeCCCCEEE
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~-~~~~~~-~~~~~v~~~~~~p~~~~~l~  325 (626)
                               ...++.+..|...|.+++.+|.. +++|+|.|-+|++||.+.+ .+.++| +|...|.+++|+|.|.+.|+
T Consensus        87 ---------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa  157 (794)
T KOG0276|consen   87 ---------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA  157 (794)
T ss_pred             ---------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence                     45689999999999999999987 9999999999999999754 566777 49999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCeE-EEeccCCCCeEEEEEeeCC--CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          326 SGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      +++.|++|++|.+.+... ..+.+|...|+|++|-+.|  .+|++|+.|.++++||..+..+...       ..+|...|
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T-------LeGHt~Nv  230 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT-------LEGHTNNV  230 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH-------hhcccccc
Confidence            999999999999977554 4577999999999998855  5999999999999999998876432       33456899


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  467 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~  467 (626)
                      ..+.|+|.= .++++|+.||+++||+..+....-...-....+.+++-.+.++.++.|.+.|.|.
T Consensus       231 s~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  231 SFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             eEEEecCCC-cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence            999999986 6999999999999999664332222222456788888888888888887666554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.7e-26  Score=200.10  Aligned_cols=249  Identities=21%  Similarity=0.337  Sum_probs=201.8

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .+|.+.|..+...--|+.|||++.|++|+|+.+.+...                                          
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------   45 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------   45 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence            57999999999888899999999999999999987321                                          


Q ss_pred             CCCceeeccCccceEEEEEcC--CC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCC-CCEEEEEeCC
Q 006909          258 ESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPID-DNYFISGSID  330 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~--~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~-~~~l~s~s~d  330 (626)
                      ..++.+|.||.++|..++|..  -| .|++|+.||.|.||.-.+++-.+..   .|...|++++|.|.+ +-.|++++.|
T Consensus        46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD  125 (299)
T KOG1332|consen   46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD  125 (299)
T ss_pred             ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence            245789999999999999974  34 9999999999999999888655544   388999999999943 4568899999


Q ss_pred             CcEEEEeCCCC-e---EEEeccCCCCeEEEEEeeC---C-----------CEEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909          331 GKVRIWGVCEK-R---VVDWADVRDVISAICYIPD---G-----------KGFIVGSITGTCHFYKASGNDLKLEKVDFH  392 (626)
Q Consensus       331 g~v~iwd~~~~-~---~~~~~~~~~~i~~i~~sp~---g-----------~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~  392 (626)
                      |.|.|.+.+.. .   ......|.-.|++++|.|.   |           +.|++|+.|..|+||+..+.....+     
T Consensus       126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e-----  200 (299)
T KOG1332|consen  126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE-----  200 (299)
T ss_pred             CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh-----
Confidence            99999988764 1   2235678889999999996   5           6799999999999999988754433     


Q ss_pred             cccccCCCCeEEEEEcCCC---CcEEEEEeCCCcEEEEeCCcceeee---eecCCCCCeEEEEEcCCCCEEEEEeCCccE
Q 006909          393 DRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDVIHKF---KGLPKSGSQMSASFTTTGKHIISIGDDCRV  466 (626)
Q Consensus       393 ~~~~~~~~~i~~l~~s~~~---~~~l~~~s~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I  466 (626)
                      .....|.+.|+.++|.|.-   ...|++++.||++.||.........   ........+..++||+.|+.|+.++.|+.|
T Consensus       201 ~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv  280 (299)
T KOG1332|consen  201 RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV  280 (299)
T ss_pred             hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEE
Confidence            2244567999999999963   3579999999999999865221111   123356789999999999999999999999


Q ss_pred             EEEECCC
Q 006909          467 YVWNYDE  473 (626)
Q Consensus       467 ~iwd~~~  473 (626)
                      .+|.-+.
T Consensus       281 tlwke~~  287 (299)
T KOG1332|consen  281 TLWKENV  287 (299)
T ss_pred             EEEEeCC
Confidence            9998553

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.8e-25  Score=193.94  Aligned_cols=281  Identities=16%  Similarity=0.175  Sum_probs=215.7

Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      +..+.+.+|.++|..+.|+-+| +.++|+.|.+|++|+...+.+++++. |...|..++.+. ++..|++|+.|..|.+|
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVW   86 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEE
Confidence            4567788999999999999887 99999999999999999999999995 888999999998 99999999999999999


Q ss_pred             eCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          337 GVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       337 d~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      |+.+|++.+ +.+|...|+.+.|+.+...+++|+.|.++++||-++......++....     ...|.++..+.   ..|
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-----~D~V~Si~v~~---heI  158 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-----KDGVSSIDVAE---HEI  158 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-----cCceeEEEecc---cEE
Confidence            999998764 789999999999999999999999999999999988765443332222     37889998875   479


Q ss_pred             EEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC--CCCccCCcccee-eec
Q 006909          416 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP--SSKQKNSVRSCE-HFF  492 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~~-~~~  492 (626)
                      ++|+.||+++.||++........  ...+|++++|+++++..+.++.|++|++-|-.++...  ...+.......- .+.
T Consensus       159 vaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~  236 (307)
T KOG0316|consen  159 VAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN  236 (307)
T ss_pred             EeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence            99999999999999876655544  4568999999999999999999999999999988432  233333222211 122


Q ss_pred             cCCcEEEEecCCCCcccccccCCCccccCccccccCCCC---cccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909          493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       493 ~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                      . .....++-+.||.             +.+|+.+.+..   +.......++.+++.|.-..+.+|+.  +.+..|-
T Consensus       237 q-sdthV~sgSEDG~-------------Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~--~~~~~~~  297 (307)
T KOG0316|consen  237 Q-SDTHVFSGSEDGK-------------VYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG--HGDLFWY  297 (307)
T ss_pred             c-cceeEEeccCCce-------------EEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC--Cceecee
Confidence            1 2222333344443             34455444332   22233334888999998776666663  4566674

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=2.1e-25  Score=214.39  Aligned_cols=255  Identities=20%  Similarity=0.331  Sum_probs=206.0

Q ss_pred             cccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          179 AHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      -|.+.|+.+.+-|... .+||++..+.|.|||...........                                   -+
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-----------------------------------~~  166 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-----------------------------------GE  166 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-----------------------------------cc
Confidence            5999999999999765 77888889999999998632111000                                   01


Q ss_pred             CCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCee-------eEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909          258 ESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~-------~~~~-~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                      ..|-..+.||...-.+++|++.  +.|++++.|++|++||+.....       ...+ .|...|..++|+|.+.+.|+++
T Consensus       167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv  246 (422)
T KOG0264|consen  167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV  246 (422)
T ss_pred             CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence            3456688899998899999975  5999999999999999965433       2223 4999999999999899999999


Q ss_pred             eCCCcEEEEeCCC--CeE-EEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          328 SIDGKVRIWGVCE--KRV-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       328 s~dg~v~iwd~~~--~~~-~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      +.|+.+.|||+++  .+. .....|...|+|++|+| ++..||+|+.|++|.+||+++.......+.      .|...|.
T Consensus       247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e------~H~dev~  320 (422)
T KOG0264|consen  247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE------GHEDEVF  320 (422)
T ss_pred             cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc------CCCcceE
Confidence            9999999999995  222 23567899999999999 567788999999999999998876544333      3458999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcc--------------eeeeeecCCCCCeEEEEEcCCCCE-EEEEeCCccEEE
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDV--------------IHKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYV  468 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~~sp~g~~-l~s~s~dg~I~i  468 (626)
                      ++.|+|.....|++++.|+.+.|||+...              ...|.-.+|...|..++|+|+..+ |+++++|+.+.|
T Consensus       321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI  400 (422)
T KOG0264|consen  321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI  400 (422)
T ss_pred             EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence            99999998889999999999999997532              223555678999999999999876 567889999999


Q ss_pred             EECCCC
Q 006909          469 WNYDEL  474 (626)
Q Consensus       469 wd~~~~  474 (626)
                      |.....
T Consensus       401 W~~s~~  406 (422)
T KOG0264|consen  401 WQMAEN  406 (422)
T ss_pred             eecccc
Confidence            998864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=5.5e-25  Score=230.18  Aligned_cols=249  Identities=21%  Similarity=0.372  Sum_probs=205.8

Q ss_pred             cccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCC
Q 006909          165 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  244 (626)
Q Consensus       165 ~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (626)
                      |.......+...+.||.+.|++++|..-+.+|++|+.|.+++|||..+                                
T Consensus       233 ~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s--------------------------------  280 (537)
T KOG0274|consen  233 WDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST--------------------------------  280 (537)
T ss_pred             eecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--------------------------------
Confidence            334445555556999999999999987788999999999999999887                                


Q ss_pred             ceeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCE
Q 006909          245 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~  323 (626)
                                   +.+.+.+.+|.+.|.++...+ ..+++|+.|.+|++|++.++.++.++. |..+|.++..   ++.+
T Consensus       281 -------------g~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~---~~~~  343 (537)
T KOG0274|consen  281 -------------GECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL---DEPL  343 (537)
T ss_pred             -------------CcEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe---cCCE
Confidence                         566889999999999998654 478889999999999999999999998 9999999999   5799


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC-ceeeeEEeeccccccCCCC
Q 006909          324 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~  401 (626)
                      +++|+.|++|++||+.+++++. +.+|...|.++.+.+. ..+++|+.|++|++||+.+. ++...       ...|..-
T Consensus       344 lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t-------l~~h~~~  415 (537)
T KOG0274|consen  344 LVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT-------LQGHTSL  415 (537)
T ss_pred             EEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh-------hcCCccc
Confidence            9999999999999999988775 7789999999987765 89999999999999999988 43221       2333456


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecC-CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      +..+.+..   ++|++++.|++|++||..+......... +...|..+++.  ...+++++.|+++++||++++.
T Consensus       416 v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  416 VSSLLLRD---NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             cccccccc---ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence            66665543   5899999999999999775444333333 56778887765  4678899999999999999873

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=2e-24  Score=226.05  Aligned_cols=233  Identities=19%  Similarity=0.353  Sum_probs=199.1

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      |...|.+..|.  ..++++++.|++|++|+..++                                             .
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~---------------------------------------------~  239 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG---------------------------------------------Y  239 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccc---------------------------------------------e
Confidence            67788999998  558999999999999999873                                             2


Q ss_pred             Ccee-eccCccceEEEEEcC-CCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          260 PLQE-LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       260 ~~~~-~~~h~~~V~~l~~s~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      .+.. +.||.+.|.++++.. +++|++|+.|.++++||..+|+|...+. |.+.|.++..   .+..+++|+.|.+|++|
T Consensus       240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~---~~~~~~sgs~D~tVkVW  316 (537)
T KOG0274|consen  240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI---DPFLLVSGSRDNTVKVW  316 (537)
T ss_pred             EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc---cCceEeeccCCceEEEE
Confidence            2344 889999999999976 4599999999999999999999999996 9999999988   45789999999999999


Q ss_pred             eCCCCeEEEecc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          337 GVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       337 d~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      ++.++..+.... |.++|.++.++  +.++++|+.||+|++||+...++...       ..+|...|+++.+.+.  .++
T Consensus       317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s-------l~gH~~~V~sl~~~~~--~~~  385 (537)
T KOG0274|consen  317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS-------LSGHTGRVYSLIVDSE--NRL  385 (537)
T ss_pred             eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee-------ecCCcceEEEEEecCc--ceE
Confidence            999999888776 99999999987  88999999999999999997665332       3346689999988874  489


Q ss_pred             EEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          416 MITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      ++|+.|++|++||+.+. ........|...+..+.  ..+++|++++.|++|++||..++.
T Consensus       386 ~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  386 LSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             EeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccCc
Confidence            99999999999998876 44444455777776554  458899999999999999999873

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.1e-24  Score=207.45  Aligned_cols=250  Identities=18%  Similarity=0.290  Sum_probs=211.6

Q ss_pred             cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      +...+..+|+||+..|+.+.|+|+...+++++.|..|+||.+..                                    
T Consensus       249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~------------------------------------  292 (506)
T KOG0289|consen  249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL------------------------------------  292 (506)
T ss_pred             chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc------------------------------------
Confidence            44567788999999999999999999999999999999999876                                    


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCC---CCeEEEEEeeCCCCEE
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDNYF  324 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~~p~~~~~l  324 (626)
                               .........|.++|+.+..+|.| ||++++.|++..+.|++++.++....+.   -.+++++|+| ||.+|
T Consensus       293 ---------~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLif  362 (506)
T KOG0289|consen  293 ---------SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIF  362 (506)
T ss_pred             ---------ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEE
Confidence                     22345566799999999999998 9999999999999999999998888654   3589999999 99999


Q ss_pred             EEEeCCCcEEEEeCCCCeE-EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          325 ISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      .+|..||.|+|||+..+.. ..+.+|.++|.+++|+.+|-+|++++.|+.|++||++.... +..+.....     ..+.
T Consensus       363 gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-~kt~~l~~~-----~~v~  436 (506)
T KOG0289|consen  363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-FKTIQLDEK-----KEVN  436 (506)
T ss_pred             eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-cceeecccc-----ccce
Confidence            9999999999999987664 45788999999999999999999999999999999987653 334444432     4799


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      ++.|.+.| .+|++++.|=+|++++-.  +.........|.+..+++.|....++++++|.|..++++.+
T Consensus       437 s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  437 SLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            99999998 788888887777777732  33333344457778899999999999999999999998865

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1.1e-24  Score=230.19  Aligned_cols=292  Identities=20%  Similarity=0.269  Sum_probs=217.9

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc-
Q 006909          180 HKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI-  256 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  256 (626)
                      |+..|.+++.+|||..+||||  .||.++||+........                                  ..++. 
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~----------------------------------~~~~~~   57 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK----------------------------------EEKNEN   57 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchh----------------------------------hhhhcc
Confidence            466799999999999999999  89999999987521100                                  00000 


Q ss_pred             cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC------------------CeeeEee-cCCCCeEEEEE
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------------NQCLNVF-DHHNYVTCVQF  316 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~------------------~~~~~~~-~~~~~v~~~~~  316 (626)
                      -...+.....|.+.|+|+.|+||| +||+||.|+.|.||....                  .++...+ +|...|..++|
T Consensus        58 l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W  137 (942)
T KOG0973|consen   58 LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW  137 (942)
T ss_pred             cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence            135567778899999999999999 999999999999998762                  1233334 59999999999


Q ss_pred             eeCCCCEEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc
Q 006909          317 NPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  395 (626)
Q Consensus       317 ~p~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  395 (626)
                      +| ++.+|++++.|++|.+|+.++.+.. .+.+|...|..+.|.|-|++|++-+.|++|++|.+.+...... +..+-..
T Consensus       138 sp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~-It~pf~~  215 (942)
T KOG0973|consen  138 SP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS-ITKPFEE  215 (942)
T ss_pred             CC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe-eccchhh
Confidence            99 9999999999999999999987654 4789999999999999999999999999999999776443222 2111112


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC-----CC-----------
Q 006909          396 KTSGNKITGIQFSRDESQRIMITSE----DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GK-----------  455 (626)
Q Consensus       396 ~~~~~~i~~l~~s~~~~~~l~~~s~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-----g~-----------  455 (626)
                      .........+.||||| .+|++...    -.++.|.+-.+........+|.+++..+.|+|.     .+           
T Consensus       216 ~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y  294 (942)
T KOG0973|consen  216 SPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY  294 (942)
T ss_pred             CCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence            2234568899999998 68887633    347888876555445555668999999999871     11           


Q ss_pred             -EEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCc
Q 006909          456 -HIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL  517 (626)
Q Consensus       456 -~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~  517 (626)
                       .+|+|+.|++|-||...........+        .++ +..++.++|+|||..|+.++.|+.
T Consensus       295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~--------~lf-~~SI~DmsWspdG~~LfacS~DGt  348 (942)
T KOG0973|consen  295 CIAAVGSQDRSLSVWNTALPRPLFVIH--------NLF-NKSIVDMSWSPDGFSLFACSLDGT  348 (942)
T ss_pred             EEEEEecCCccEEEEecCCCCchhhhh--------hhh-cCceeeeeEcCCCCeEEEEecCCe
Confidence             57899999999999985532111111        111 244677888888887777666553

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.4e-25  Score=212.11  Aligned_cols=271  Identities=14%  Similarity=0.184  Sum_probs=209.2

Q ss_pred             cCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          181 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       181 ~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      ...|.+++|||... -+|+.+. -.+.||+..+                                             ..
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~---------------------------------------------~~   59 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT---------------------------------------------RS   59 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecch---------------------------------------------hh
Confidence            35799999999654 3444443 4599998876                                             34


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      ..+++......|.++.|-.|| +|++|...|.|+|+|+.+...++.+ .|..+|..+.|+|.++..|++|+.|+.+++||
T Consensus        60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d  139 (487)
T KOG0310|consen   60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD  139 (487)
T ss_pred             hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence            456666778899999999999 7778888899999997776666666 49999999999998888899999999999999


Q ss_pred             CCCCeEE-EeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          338 VCEKRVV-DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       338 ~~~~~~~-~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      +.+..+. .+.+|.+.|.|.+|+|. +..+++|+.||.|++||++........+       .|+.+|..+.+-|.| ..+
T Consensus       140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-------nhg~pVe~vl~lpsg-s~i  211 (487)
T KOG0310|consen  140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-------NHGCPVESVLALPSG-SLI  211 (487)
T ss_pred             cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-------cCCCceeeEEEcCCC-CEE
Confidence            9988764 57899999999999995 5588999999999999999875322222       245899999999997 455


Q ss_pred             EEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccC
Q 006909          416 MITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE  494 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  494 (626)
                      ++++ .+.|+|||+....+.... ..|...|+|+.+..++..|++|+-|+.|++||+.+-...........+-.++.+|+
T Consensus       212 asAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d  290 (487)
T KOG0310|consen  212 ASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD  290 (487)
T ss_pred             EEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCC
Confidence            5554 578999998754444333 34899999999999999999999999999999877543333333333344466666


Q ss_pred             CcEEEEecCCCC
Q 006909          495 GVSVAVQWPGIG  506 (626)
Q Consensus       495 g~~~av~~s~~~  506 (626)
                      +..++++.+.+.
T Consensus       291 d~t~viGmsnGl  302 (487)
T KOG0310|consen  291 DQTVVIGMSNGL  302 (487)
T ss_pred             CceEEEecccce
Confidence            666666555443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=8.5e-25  Score=231.09  Aligned_cols=264  Identities=23%  Similarity=0.385  Sum_probs=201.6

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      +...|.+.|+|+.|+|||+|||+|++|+.|.||....... ...|...+      ..            ..        .
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~-~~~fgs~g------~~------------~~--------v  116 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS-GTVFGSTG------GA------------KN--------V  116 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC-cccccccc------cc------------cc--------c
Confidence            3457999999999999999999999999999999874110 00000000      00            00        0


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                      -..+.+..+.+|.+.|.+++|+|++ +|++++.|++|.|||..+...+..+. |...|..+.|.| -|++|++-+.|++|
T Consensus       117 E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrti  195 (942)
T KOG0973|consen  117 ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTL  195 (942)
T ss_pred             ceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceE
Confidence            0134577889999999999999988 99999999999999999998888885 999999999999 99999999999999


Q ss_pred             EEEeCCCCeEEEec-------cCCCCeEEEEEeeCCCEEEEEec----CCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          334 RIWGVCEKRVVDWA-------DVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       334 ~iwd~~~~~~~~~~-------~~~~~i~~i~~sp~g~~l~~g~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      ++|.+.+-.+.+..       .....+..+.|+|||++|++...    ..++.|.+-.+.+....       ..+|..++
T Consensus       196 kvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~-------LvGH~~p~  268 (942)
T KOG0973|consen  196 KVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKD-------LVGHSAPV  268 (942)
T ss_pred             EEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeee-------eecCCCce
Confidence            99997663333321       22345788999999999998643    23566666544332221       33456899


Q ss_pred             EEEEEcCC--------CC--------cEEEEEeCCCcEEEEeCCcceeeeeec-CCCCCeEEEEEcCCCCEEEEEeCCcc
Q 006909          403 TGIQFSRD--------ES--------QRIMITSEDSKLRILDGVDVIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCR  465 (626)
Q Consensus       403 ~~l~~s~~--------~~--------~~l~~~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg~  465 (626)
                      +++.|+|.        |.        ..+|+|+.|++|.||........+..+ -....|..++|+|||..|+.+|.||+
T Consensus       269 evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt  348 (942)
T KOG0973|consen  269 EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT  348 (942)
T ss_pred             EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence            99999872        11        168899999999999976554444432 14568999999999999999999999


Q ss_pred             EEEEECCCC
Q 006909          466 VYVWNYDEL  474 (626)
Q Consensus       466 I~iwd~~~~  474 (626)
                      |.+..++..
T Consensus       349 V~~i~Fee~  357 (942)
T KOG0973|consen  349 VALIHFEEK  357 (942)
T ss_pred             EEEEEcchH
Confidence            999999764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.3e-23  Score=183.56  Aligned_cols=251  Identities=20%  Similarity=0.339  Sum_probs=200.5

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      .+.+.-+.|++.|.|.+|||+|++||||+.|.+|++..+....+.                                   
T Consensus        80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~-----------------------------------  124 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN-----------------------------------  124 (350)
T ss_pred             EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccc-----------------------------------
Confidence            334445679999999999999999999999999999876542111                                   


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCC----C-eEEEE-eCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNS----N-YLLSC-SMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF  324 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~----~-~l~s~-s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l  324 (626)
                           ...+-.++.-|.+.|..++|..+    + .|+++ ..|..|.+-|...|+....+ +|.+.|.++- +- ++-.|
T Consensus       125 -----~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~  197 (350)
T KOG0641|consen  125 -----ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMF  197 (350)
T ss_pred             -----ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEE
Confidence                 02334567789999999999742    3 55554 45777888899999988887 4888888763 22 78999


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEeccC--------CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909          325 ISGSIDGKVRIWGVCEKRVVDWADV--------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  396 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~~~~~~~~~~--------~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  396 (626)
                      ++|+.|.+|++||++-..++...+.        ...|.+++..|.|++|++|..|..+.+||+++++....       ..
T Consensus       198 ~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~-------f~  270 (350)
T KOG0641|consen  198 ASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR-------FH  270 (350)
T ss_pred             EccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee-------eC
Confidence            9999999999999998776654322        25699999999999999999999999999999886543       22


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC----cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      .|...|.++.|+|.. .++++++.|..|++-|+.    ..........|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus       271 phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  271 PHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            345889999999986 899999999999999975    222333334588889999999999899999999999999875

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.6e-24  Score=208.28  Aligned_cols=245  Identities=24%  Similarity=0.386  Sum_probs=202.0

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      ++|...|.+++.||||+|||||+.|..|.||+..+                                             
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t---------------------------------------------  233 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT---------------------------------------------  233 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc---------------------------------------------
Confidence            48999999999999999999999999999999998                                             


Q ss_pred             CCCceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          258 ESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      .++++.+.+|.+.|.+++|-.. ..|++++.|.+|++|+++....+.++ +|.+.|.+|.... -++.+-+|+.|+++++
T Consensus       234 ~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rl  312 (479)
T KOG0299|consen  234 LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRL  312 (479)
T ss_pred             cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEE
Confidence            4567889999999999999865 48999999999999999887777655 7999999998876 6777777779999999


Q ss_pred             EeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc-----CCCCeEEEEEcCC
Q 006909          336 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-----SGNKITGIQFSRD  410 (626)
Q Consensus       336 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~i~~l~~s~~  410 (626)
                      |++.......+.++.+.+.|++|-.+ ..+++|+.+|.|.+|++...+.....-..|+....     +...|++++..|.
T Consensus       313 wKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~  391 (479)
T KOG0299|consen  313 WKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG  391 (479)
T ss_pred             EeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence            99987777778889999999999654 58999999999999999887766554444433222     1238999999998


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEE
Q 006909          411 ESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWN  470 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd  470 (626)
                      . .++++|+.+|.|++|-+.+.   +..+...+-.+.|++++|+++|+.|++| +....+--|-
T Consensus       392 s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  392 S-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             C-ceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence            5 89999999999999997755   4444445567899999999999976665 4444444443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=2.7e-23  Score=201.45  Aligned_cols=413  Identities=14%  Similarity=0.224  Sum_probs=273.8

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCC--------cEEEEEcCCCcc-----------eeeeecCCCCCccCCCCCe
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDG--------VVRIWHVTSVAA-----------SCKSFTDDGGFGSNAKEGK  234 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg--------~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~  234 (626)
                      ++-+.||+..|.||+.+||--.+|+|-.-|        .++|||..+...           .+..|+..       ..+.
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~-------~~G~  169 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKI-------NGGS  169 (626)
T ss_pred             cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeeccc-------CCCc
Confidence            344669999999999999988888876555        499999554322           22222211       1111


Q ss_pred             eeecCCCCCCceeecCCcccccc-CCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-----
Q 006909          235 IKFGKKKSSHVPVVIPDEVFQIE-ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-----  306 (626)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-----  306 (626)
                      .......++....    .+|+.. +............|....|+|.+  .+++++ .+.+..|+.+++...+...     
T Consensus       170 ~l~~vD~s~~h~l----SVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~  244 (626)
T KOG2106|consen  170 LLCAVDDSNPHML----SVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKR  244 (626)
T ss_pred             eEEEecCCCcccc----chhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccc
Confidence            1111111111111    122222 12233344456788899999965  555555 5789999999887766542     


Q ss_pred             CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909          307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  385 (626)
Q Consensus       307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~  385 (626)
                      ....|.|++|.+ ++ -+++|..+|.|.||+..+.+... ...|.+.|.+++...+|..|- |+.|..|..||-.-.+. 
T Consensus       245 ekk~Vl~v~F~e-ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~-  320 (626)
T KOG2106|consen  245 EKKFVLCVTFLE-NG-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKL-  320 (626)
T ss_pred             cceEEEEEEEcC-CC-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccccccc-
Confidence            346899999998 55 47899999999999998776543 448999999999999997555 99999999999321110 


Q ss_pred             eeEEeec---------------------------c--------ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 006909          386 LEKVDFH---------------------------D--------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  430 (626)
Q Consensus       386 ~~~~~~~---------------------------~--------~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~  430 (626)
                       ..+.++                           +        ....|......++.+|+. ..+++++.|+.+++|+-.
T Consensus       321 -r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~~~  398 (626)
T KOG2106|consen  321 -RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWNDH  398 (626)
T ss_pred             -ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEccCC
Confidence             000000                           0        012355667788889985 789999999999999943


Q ss_pred             cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccc
Q 006909          431 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK  510 (626)
Q Consensus       431 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~  510 (626)
                      +..-...   -..+..++.|+|.| .||.|+..|...+.|.++.............+++.|+|+|.++|++-.++..+++
T Consensus       399 k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  399 KLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             ceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence            3333222   35678899999999 9999999999999999987444333337788999999999999999888888888


Q ss_pred             cccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCC-hh--hHHHHhhh
Q 006909          511 SLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQD-PQ--QQRLQQQC  587 (626)
Q Consensus       511 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~-~~--~~~~~~~~  587 (626)
                      .++.+......          .-.-++.+++.+.||+|++++.+.+. |-.|..|......+..... ..  ...+...+
T Consensus       475 ~Vs~~g~~y~r----------~~k~~gs~ithLDwS~Ds~~~~~~S~-d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF  543 (626)
T KOG2106|consen  475 RVSANGRKYSR----------VGKCSGSPITHLDWSSDSQFLVSNSG-DYEILYWKPSECKQITSVKDVKWATYTCTLGF  543 (626)
T ss_pred             EECCCCcEEEE----------eeeecCceeEEeeecCCCceEEeccC-ceEEEEEccccCcccceecceeeeeeEEEEEE
Confidence            77665432211          11223378999999999999999887 6778889433321111000 00  00000001


Q ss_pred             c----cCCccccccccc-cceEEEEecCCceEeeeee
Q 006909          588 L----NNVDDVRAISAT-WGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       588 ~----~~~~~~~~~s~~-dg~~ivt~g~Dg~Irvw~~  619 (626)
                      .    .+...+.+++.+ .++++|+|.+-|.|++|++
T Consensus       544 ~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y  580 (626)
T KOG2106|consen  544 EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY  580 (626)
T ss_pred             EEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence            1    111111222222 6889999999999999985

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=2.6e-25  Score=203.93  Aligned_cols=280  Identities=18%  Similarity=0.259  Sum_probs=226.5

Q ss_pred             cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---------cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          266 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---------DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---------~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      |..+.+-|..|+||| +|++|+.||.|.+||..+|+..+.+         -+..+|.|+.|+. +...+++|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence            567788999999998 9999999999999999998776543         2778999999999 9999999999999999


Q ss_pred             EeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          336 WGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       336 wd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      |.+.+|.++...  .|...|+|+.|+.|+..+++++.|.++++.-+.+++...+       .++|...|+...|.++| .
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE-------frGHsSyvn~a~ft~dG-~  361 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE-------FRGHSSYVNEATFTDDG-H  361 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHH-------hcCccccccceEEcCCC-C
Confidence            999999987643  6889999999999999999999999999999988876432       55667899999999998 7


Q ss_pred             EEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909          414 RIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  490 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  490 (626)
                      ++++++.||+|++|+..  ++..+|+..+...+|+++-.-|. -.+++.+...++|+|-++...........+.      
T Consensus       362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkR------  435 (508)
T KOG0275|consen  362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKR------  435 (508)
T ss_pred             eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCc------
Confidence            99999999999999976  56777877777788888887774 4678888889999999998752221111110      


Q ss_pred             eccCCcEEEEecCCCCcccccccCCCccccCccccccCC--CCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909          491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET--APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                        -.|..++...+|.|..++..+.+..-+++.   ++.+  ...+.-++..+.+++-.|.-+.+++.+. |+.+++|.
T Consensus       436 --EgGdFi~~~lSpkGewiYcigED~vlYCF~---~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE-DgllKLWk  507 (508)
T KOG0275|consen  436 --EGGDFINAILSPKGEWIYCIGEDGVLYCFS---VLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE-DGLLKLWK  507 (508)
T ss_pred             --cCCceEEEEecCCCcEEEEEccCcEEEEEE---eecCceeeeeecccccccccccCcccchhhhhcc-cchhhhcC
Confidence              135666777777777777777766555443   1121  1245567778999999999999999988 89999994

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.1e-25  Score=207.82  Aligned_cols=280  Identities=15%  Similarity=0.236  Sum_probs=214.5

Q ss_pred             CceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          260 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      .+..+.||...|.+++=+|..  .+++|+.||.|+|||+.+..++.++. |.+.|..+++..   ..+++++.|.+|+.|
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQW  134 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeee
Confidence            356778999999999999976  79999999999999999999999996 888999999964   778899999999999


Q ss_pred             eCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          337 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       337 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      -+... ..........+..+.-+..+..+++++.  .|.|||..-.... ..+...      ...|.++.|+|-....|+
T Consensus       135 k~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv-~smswG------~Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  135 KIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPV-SSMSWG------ADSISSVKFNPVETSILA  204 (433)
T ss_pred             eccCC-cceeeeccccccccccccccccccccCc--eeeecccccCCcc-ceeecC------CCceeEEecCCCcchhee
Confidence            88764 4455556667777777777778888765  5899998755432 223222      267999999999878888


Q ss_pred             EEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccC
Q 006909          417 ITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE  494 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  494 (626)
                      ++..|+.|.+||++..  .....   ....-+.++|+|.+-.+++|++|..++.||+.....+...              
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi---~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v--------------  267 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVI---LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV--------------  267 (433)
T ss_pred             eeccCCceEEEecccCCccceee---eeccccceecCccccceeeccccccceehhhhhhcccchh--------------
Confidence            9999999999998743  33322   2345578999998888889999999999999875322222              


Q ss_pred             CcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCC
Q 006909          495 GVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGY  574 (626)
Q Consensus       495 g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~  574 (626)
                                                            ..+|...|..+.|||-|+-++++++ |..|+|+....+    
T Consensus       268 --------------------------------------~~dhvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~~----  304 (433)
T KOG0268|consen  268 --------------------------------------HKDHVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNHG----  304 (433)
T ss_pred             --------------------------------------hcccceeEEEeccCCCcchhccccc-cceEEEeecCCC----
Confidence                                                  2234444667778888888999999 899999988877    


Q ss_pred             CCChhhHHHHhhhcc-CCccc--cccccccceEEEEecCCceEeeeeec
Q 006909          575 CQDPQQQRLQQQCLN-NVDDV--RAISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       575 ~~~~~~~~~~~~~~~-~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                             .....++. --.|+  +.+|. |.++|++||+||.||+|+-+
T Consensus       305 -------~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  305 -------HSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             -------cchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecc
Confidence                   22222221 11222  34444 89999999999999999865

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=1.8e-24  Score=210.12  Aligned_cols=296  Identities=16%  Similarity=0.162  Sum_probs=206.8

Q ss_pred             CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee----eEeec--CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----LNVFD--HHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~----~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                      ......+.+|+..|+++++.|.| +|++|+.|.+|++||+.....    .+.+.  ....|++++|++ +++.|++.+..
T Consensus       157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~  235 (641)
T KOG0772|consen  157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGS  235 (641)
T ss_pred             ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecC
Confidence            44556788999999999999998 999999999999999975322    22222  456799999999 88888888888


Q ss_pred             CcEEEEeCCCCeEEE-------------eccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909          331 GKVRIWGVCEKRVVD-------------WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  396 (626)
Q Consensus       331 g~v~iwd~~~~~~~~-------------~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  396 (626)
                      ...+|+|-.+.+...             ..+|...++|.+|+|.. ..+++++.||++++||+.+.+.....+.... ..
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~-~~  314 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP-AG  314 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc-CC
Confidence            899999987765443             45677889999999965 5788999999999999988776555443322 22


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----ceeee-eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~-~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      ...-+++.++|+|+| .+||+|+.||.|.+|+...    ....+ ..|.....|+++.||+||++|++-+.|+++++||+
T Consensus       315 g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             CcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence            334678999999998 6899999999999999542    22222 22333448999999999999999999999999999


Q ss_pred             CCCCCCCCCccC----CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccc--cCCCCcccCCCcccCCccc
Q 006909          472 DELCFPSSKQKN----SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN--LETAPWIRDSERFSLGSWF  545 (626)
Q Consensus       472 ~~~~~~~~~~~~----~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~  545 (626)
                      .....+.....+    ....-+.|+|+..++...-+-...        .......+.+.  ++....+.-....|..+.|
T Consensus       394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~--------~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~W  465 (641)
T KOG0772|consen  394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG--------MTAGTLFFFDRMTLDTVYKIDISTASVVRCLW  465 (641)
T ss_pred             cccccchhhhcCCCccCCCCccccCCCceEEEecccccCC--------CCCceEEEEeccceeeEEEecCCCceEEEEee
Confidence            987544433222    112233567766665544331110        00011111111  1111112222445677788


Q ss_pred             cCCCCcccccCCCCCCCCCC
Q 006909          546 SNDGPCRGSATWPAEKLPLW  565 (626)
Q Consensus       546 s~dg~~l~s~~~~d~~i~vw  565 (626)
                      +|.-+.|..++. ||.++++
T Consensus       466 hpkLNQi~~gsg-dG~~~vy  484 (641)
T KOG0772|consen  466 HPKLNQIFAGSG-DGTAHVY  484 (641)
T ss_pred             cchhhheeeecC-CCceEEE
Confidence            888776666665 6777775

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=7.6e-24  Score=194.02  Aligned_cols=294  Identities=19%  Similarity=0.248  Sum_probs=217.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909          184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  263 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (626)
                      -.|+.|++.|.+||.|+.||.|.|||+.+                                             ...-+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T---------------------------------------------~~iar~   60 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDT---------------------------------------------FRIARM   60 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccc---------------------------------------------cchhhh
Confidence            78999999999999999999999999987                                             334567


Q ss_pred             eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe
Q 006909          264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  342 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~  342 (626)
                      +.+|..+|.+++||++| .|+|+|.|..|.+||+..|.+++.+....+|+.+.|+|.+.+.+++.-.+..-.+.++....
T Consensus        61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~  140 (405)
T KOG1273|consen   61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK  140 (405)
T ss_pred             hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence            88999999999999998 89999999999999999999999999999999999999777777766655555555554322


Q ss_pred             --EEEecc---CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          343 --VVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       343 --~~~~~~---~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                        ++....   ......+..|.+.|+++++|...|.+.+||..+.++... .....     ...|..+.++..| .+|++
T Consensus       141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas-~rits-----~~~IK~I~~s~~g-~~lii  213 (405)
T KOG1273|consen  141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS-FRITS-----VQAIKQIIVSRKG-RFLII  213 (405)
T ss_pred             eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee-eeech-----heeeeEEEEeccC-cEEEE
Confidence              221111   112233446899999999999999999999998766443 11111     2578899999997 79999


Q ss_pred             EeCCCcEEEEeCCcceee-----------eeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCCCCCCCccCCc
Q 006909          418 TSEDSKLRILDGVDVIHK-----------FKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSV  485 (626)
Q Consensus       418 ~s~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~  485 (626)
                      .+.|..|+.|++.+....           +...-+...-.+++|+.+|.|++.++. ...+|||.-..|......+..  
T Consensus       214 NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~--  291 (405)
T KOG1273|consen  214 NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT--  291 (405)
T ss_pred             ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC--
Confidence            999999999997633222           222223344567899999999998874 468999998877333222211  


Q ss_pred             cceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcc
Q 006909          486 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCR  552 (626)
Q Consensus       486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l  552 (626)
                             .....+.+.|.|-...+++..++    .+.+|.+.....          -.+|+||-+.+
T Consensus       292 -------kgE~l~DV~whp~rp~i~si~sg----~v~iw~~~~~en----------wsafAPdFqel  337 (405)
T KOG1273|consen  292 -------KGEELLDVNWHPVRPIIASIASG----VVYIWAVVQVEN----------WSAFAPDFQEL  337 (405)
T ss_pred             -------chhheeecccccceeeeeeccCC----ceEEEEeecccc----------hhhcCchHHHH
Confidence                   11345678888888888777553    356666644222          23577776644

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-22  Score=176.51  Aligned_cols=296  Identities=17%  Similarity=0.177  Sum_probs=210.5

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .-+..|.+++|+|.|.+.|.|+...+++|-.....-...      ........+.                        .
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r------~~hea~~~pp------------------------~   79 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLR------HAHEAAKQPP------------------------S   79 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcc------cccccccCCC------------------------e
Confidence            456789999999999999999999999987543310000      0000000000                        0


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE-----ee-cCCCCeEEEEEee---CCCCEEEEEe
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----VF-DHHNYVTCVQFNP---IDDNYFISGS  328 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~-----~~-~~~~~v~~~~~~p---~~~~~l~s~s  328 (626)
                      ...+.-+.|.+.|.|.+|+|+| ++++|+.|++|++.-++...+..     .| -|.+.|..++|..   ..+.+|++++
T Consensus        80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g  159 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG  159 (350)
T ss_pred             EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence            0122334689999999999998 88999999999998765443322     22 3889999999964   1345677765


Q ss_pred             C-CCcEEEEeCCCCeE-EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEE
Q 006909          329 I-DGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       329 ~-dg~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l  405 (626)
                      . |..|++-|...++. ..+.+|.+.|.++ ++-+|-.+++|+.|.+|++||++-+..... -..+++. ......|..+
T Consensus       160 agdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~-glessavaav  237 (350)
T KOG0641|consen  160 AGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG-GLESSAVAAV  237 (350)
T ss_pred             CCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC-CcccceeEEE
Confidence            4 56777778877664 4577888888876 556788999999999999999987655332 1111110 1123679999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCc
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV  485 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  485 (626)
                      +..|.| ++|++|-.|....+||++........++|...|.++.|+|...|+++++.|..|++-|++.....     ...
T Consensus       238 ~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~-----el~  311 (350)
T KOG0641|consen  238 AVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH-----ELP  311 (350)
T ss_pred             EECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh-----cCc
Confidence            999998 89999999999999999977777777889999999999999999999999999999999875211     111


Q ss_pred             cceeeeccCCcEEEEecCCCCccccccc
Q 006909          486 RSCEHFFSEGVSVAVQWPGIGTEQKSLC  513 (626)
Q Consensus       486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~  513 (626)
                      ...++-+ ....+.+.|.|....+.+.+
T Consensus       312 ~~vv~eh-kdk~i~~rwh~~d~sfisss  338 (350)
T KOG0641|consen  312 IMVVAEH-KDKAIQCRWHPQDFSFISSS  338 (350)
T ss_pred             eEEEEec-cCceEEEEecCccceeeecc
Confidence            1122223 34456778888776555433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=3.3e-22  Score=194.03  Aligned_cols=368  Identities=16%  Similarity=0.259  Sum_probs=256.8

Q ss_pred             cccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcc---------------eeeeecCCCCCccCCCCCeeeecCCCC
Q 006909          179 AHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAA---------------SCKSFTDDGGFGSNAKEGKIKFGKKKS  242 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (626)
                      .-...|....|+|.+. ++++.+ .|.+..|+...+..               .+..|..++..+...+.+.+.++....
T Consensus       198 ~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~  276 (626)
T KOG2106|consen  198 TSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGT  276 (626)
T ss_pred             eccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCC
Confidence            4556788899999665 555554 57899998876432               567788888888888888887776643


Q ss_pred             CCceeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCC-----------------------
Q 006909          243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-----------------------  299 (626)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~-----------------------  299 (626)
                      ...               .+....|.+.|.+++...+|.|++|+.|..|..||-.-.                       
T Consensus       277 ~~~---------------~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d  341 (626)
T KOG2106|consen  277 NRI---------------SKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD  341 (626)
T ss_pred             ceE---------------EeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCc
Confidence            322               233348999999999999999999999999999983100                       


Q ss_pred             ------------------eeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC
Q 006909          300 ------------------QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD  361 (626)
Q Consensus       300 ------------------~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~  361 (626)
                                        -.+..+.|......++.+| +.+.+++++.|+.+++|+  ..++.-......++.|+.|+|.
T Consensus       342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhps  418 (626)
T KOG2106|consen  342 ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPS  418 (626)
T ss_pred             EEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCc
Confidence                              0111234777888999999 899999999999999999  5556555667788999999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee--c
Q 006909          362 GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG--L  439 (626)
Q Consensus       362 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--~  439 (626)
                      | .+++|+..|...+.|..+.........        ..+++.+.|+|+| .+||.|+.|+.|+||-+...-..+..  .
T Consensus       419 g-~va~Gt~~G~w~V~d~e~~~lv~~~~d--------~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k  488 (626)
T KOG2106|consen  419 G-VVAVGTATGRWFVLDTETQDLVTIHTD--------NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGK  488 (626)
T ss_pred             c-eEEEeeccceEEEEecccceeEEEEec--------CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence            9 999999999999999988554332221        3789999999998 79999999999999987643333222  2


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccc
Q 006909          440 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD  519 (626)
Q Consensus       440 ~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~  519 (626)
                      .+..+|+.+.||+|+++|.+.+-|-.|..| ..+.+..... .+.    +.+....  ..+.|     .++.        
T Consensus       489 ~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW-~~~~~~~~ts-~kD----vkW~t~~--c~lGF-----~v~g--------  547 (626)
T KOG2106|consen  489 CSGSPITHLDWSSDSQFLVSNSGDYEILYW-KPSECKQITS-VKD----VKWATYT--CTLGF-----EVFG--------  547 (626)
T ss_pred             ecCceeEEeeecCCCceEEeccCceEEEEE-ccccCcccce-ecc----eeeeeeE--EEEEE-----EEec--------
Confidence            244899999999999999999999999999 4443221111 111    1111111  11111     1110        


Q ss_pred             cCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccccccc
Q 006909          520 CSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISA  599 (626)
Q Consensus       520 ~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  599 (626)
                                    ..++..+..++-|.+.++++++.. .++|+++..+-.+        ...+......|..|...++-
T Consensus       548 --------------~s~~t~i~a~~rs~~~~~lA~gdd-~g~v~lf~yPc~s--------~rA~~he~~ghs~~vt~V~F  604 (626)
T KOG2106|consen  548 --------------GSDGTDINAVARSHCEKLLASGDD-FGKVHLFSYPCSS--------PRAPSHEYGGHSSHVTNVAF  604 (626)
T ss_pred             --------------ccCCchHHHhhhhhhhhhhhcccc-CceEEEEccccCC--------CcccceeeccccceeEEEEE
Confidence                          112223556677788888999887 7999999776541        00112223445555544433


Q ss_pred             c-cceEEEEecCCceEeeeee
Q 006909          600 T-WGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       600 ~-dg~~ivt~g~Dg~Irvw~~  619 (626)
                      . +...+.+.|.|..|..|++
T Consensus       605 l~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  605 LCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eeCCceEEecCCCceEEEEEe
Confidence            2 2344555559999999985

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=3e-23  Score=208.48  Aligned_cols=410  Identities=19%  Similarity=0.239  Sum_probs=272.5

Q ss_pred             ccccccccccccCcEEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  246 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~---~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (626)
                      .+....++.||++.|.+++|...+.   +||++|.|..||||.+.-..... ............. ....          
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~-~~~~e~~~t~~~~-~~~f----------  247 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED-SNEREDSLTTLSN-LPVF----------  247 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc-ccccccccccccC-Ccee----------
Confidence            3456678899999999999987655   89999999999999986432111 0000000000000 0000          


Q ss_pred             eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC--eeeEee--c----CCCCeEEEEEe
Q 006909          247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF--D----HHNYVTCVQFN  317 (626)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~--~~~~~~--~----~~~~v~~~~~~  317 (626)
                        ....-.+..-.....+.||...|+++.|+|.+ .|+++|.|+++.+|...+.  --+...  +    .........|+
T Consensus       248 --~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~  325 (764)
T KOG1063|consen  248 --MILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS  325 (764)
T ss_pred             --eeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc
Confidence              00000000001113455999999999999999 8999999999999987654  222222  1    23357888999


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc
Q 006909          318 PIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  393 (626)
Q Consensus       318 p~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~  393 (626)
                      | +++.+++-+..|..++|-.....    .....+|-+.|+.++|+|.|.+|++.+.|.+-|+|-.-+.+..   +.-..
T Consensus       326 ~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~---wHEia  401 (764)
T KOG1063|consen  326 P-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE---WHEIA  401 (764)
T ss_pred             C-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc---eeeec
Confidence            9 99999999999999999844322    2336789999999999999999999999999999976644333   33344


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc--------------------------------ceeee-----
Q 006909          394 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--------------------------------VIHKF-----  436 (626)
Q Consensus       394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~--------------------------------~~~~~-----  436 (626)
                      +...|+..++|++|-+.. ..+++|.+...+|+|+...                                ....+     
T Consensus       402 RPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~  480 (764)
T KOG1063|consen  402 RPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN  480 (764)
T ss_pred             ccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence            566678899999999853 6889999999999984210                                00000     


Q ss_pred             ---------------------------------------eecCCCCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECC
Q 006909          437 ---------------------------------------KGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYD  472 (626)
Q Consensus       437 ---------------------------------------~~~~~~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~  472 (626)
                                                             +..+|.-.|.+++.+|+|+++|+++..     ..|++|+..
T Consensus       481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~  560 (764)
T KOG1063|consen  481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA  560 (764)
T ss_pred             cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc
Confidence                                                   012366778999999999999998754     469999998


Q ss_pred             CCCCCC-CCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCC------CcccCCCcccCCccc
Q 006909          473 ELCFPS-SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETA------PWIRDSERFSLGSWF  545 (626)
Q Consensus       473 ~~~~~~-~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~------~~~~~~~~~~~~~~~  545 (626)
                      +-.... ......           .+.-++||||+.+|.+++.|.   .+.+|...+..      .....|.+.+-+..|
T Consensus       561 ~W~~~~~L~~HsL-----------TVT~l~FSpdg~~LLsvsRDR---t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW  626 (764)
T KOG1063|consen  561 NWLQVQELEGHSL-----------TVTRLAFSPDGRYLLSVSRDR---TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW  626 (764)
T ss_pred             chhhhheecccce-----------EEEEEEECCCCcEEEEeecCc---eEEeeeeecccchhhhhccccccceEEEEccc
Confidence            763222 111111           233455566666555555542   23333332211      125678888999999


Q ss_pred             cCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccccccc--c----cceEEEEecCCceEeeeee
Q 006909          546 SNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISA--T----WGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       546 s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~----dg~~ivt~g~Dg~Irvw~~  619 (626)
                      +||++++++++. |.++.+|..+......++       +....++....++++-  .    .+.+++.|-.-|.|.+|+.
T Consensus       627 ~pde~~FaTaSR-DK~VkVW~~~~~~d~~i~-------~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~  698 (764)
T KOG1063|consen  627 SPDEKYFATASR-DKKVKVWEEPDLRDKYIS-------RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR  698 (764)
T ss_pred             CcccceeEEecC-CceEEEEeccCchhhhhh-------hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence            999999999999 899999988766111111       1133444445555442  1    2347788889999999996


Q ss_pred             c
Q 006909          620 Y  620 (626)
Q Consensus       620 ~  620 (626)
                      +
T Consensus       699 ~  699 (764)
T KOG1063|consen  699 K  699 (764)
T ss_pred             c
Confidence            5

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=7.8e-23  Score=211.97  Aligned_cols=270  Identities=17%  Similarity=0.245  Sum_probs=212.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      +|++.-+.++|.|+|.+|+|++.||.|++|+..+..                                           .
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------------------------------------------e   47 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------------------------------------------E   47 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------------------------------------------c
Confidence            799999999999999999999999999999976521                                           1


Q ss_pred             CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      . -..+.-+...|.+++... ++|++|+.+++|.+|.+..++.-..+ ...-++++++|+. +|++++.||.|-.|++.+
T Consensus        48 ~-P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~  124 (933)
T KOG1274|consen   48 E-PETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLN  124 (933)
T ss_pred             C-CchhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEe
Confidence            1 112222677888887543 48999999999999999888765444 4677899999998 999999999999999999


Q ss_pred             CCCC-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc-CCCCeEEEEEcCCCCcEE
Q 006909          338 VCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-SGNKITGIQFSRDESQRI  415 (626)
Q Consensus       338 ~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~l  415 (626)
                      +... ....+.+|..+|.++.|+|.+++||+.+.||.+++|++.++.+............. ....++.++|+|+| ..+
T Consensus       125 ~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~l  203 (933)
T KOG1274|consen  125 LDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTL  203 (933)
T ss_pred             ccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-CeE
Confidence            8764 45568899999999999999999999999999999999977654321111111111 13567789999997 478


Q ss_pred             EEEeCCCcEEEEeCCcceeeeee--cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeecc
Q 006909          416 MITSEDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFS  493 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  493 (626)
                      ++...|+.|++|+.......+..  ..+...+..+.|+|+|+|||+++.||.|.|||+++..  . -.....+.|++|.|
T Consensus       204 a~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~--~-~~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  204 AVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE--R-HEFKRAVCCEAWKP  280 (933)
T ss_pred             EeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch--h-ccccceeEEEecCC
Confidence            88889999999998765555544  3344558999999999999999999999999999731  1 22345667778887


Q ss_pred             CCcEE
Q 006909          494 EGVSV  498 (626)
Q Consensus       494 ~g~~~  498 (626)
                      +...+
T Consensus       281 ~~n~i  285 (933)
T KOG1274|consen  281 NANAI  285 (933)
T ss_pred             CCCee
Confidence            65543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.2e-23  Score=211.93  Aligned_cols=277  Identities=17%  Similarity=0.210  Sum_probs=213.4

Q ss_pred             ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecC-CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE-Eec
Q 006909          270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWA  347 (626)
Q Consensus       270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~  347 (626)
                      ..+-+.|+..+.|+.|. ...|.+|+..++........ ...|+++.|++ +|.+|++|..+|.|.|||....+.. .+.
T Consensus       179 Y~nlldWss~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~  256 (484)
T KOG0305|consen  179 YLNLLDWSSANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLR  256 (484)
T ss_pred             hhhHhhcccCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhcccccccc
Confidence            34556788666666654 35799999999987776653 88999999999 9999999999999999998775544 344


Q ss_pred             c-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909          348 D-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  426 (626)
Q Consensus       348 ~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i  426 (626)
                      . |...|.+++|.  +..+.+|+.++.|..+|++..+.....      ...|...|..+.|++|+ .++++|+.|+.+.|
T Consensus       257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~------~~~H~qeVCgLkws~d~-~~lASGgnDN~~~I  327 (484)
T KOG0305|consen  257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST------LQGHRQEVCGLKWSPDG-NQLASGGNDNVVFI  327 (484)
T ss_pred             CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh------hhcccceeeeeEECCCC-CeeccCCCccceEe
Confidence            5 78999999998  668999999999999999987765442      33456899999999998 89999999999999


Q ss_pred             EeCCcceeeeeecCCCCCeEEEEEcCC-CCEEEEEe--CCccEEEEECCCCCCCCCCccCCccceeeeccCCc--EEEEe
Q 006909          427 LDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV--SVAVQ  501 (626)
Q Consensus       427 wd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~--~~av~  501 (626)
                      ||.......+....|.+.|.+++|+|- ...||+|+  .|++|++||..++...........++.+.|++...  +.+..
T Consensus       328 wd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG  407 (484)
T KOG0305|consen  328 WDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHG  407 (484)
T ss_pred             ccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecC
Confidence            999776667777779999999999994 56788765  69999999999875555554454445555555442  22233


Q ss_pred             cCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          502 WPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       502 ~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      ++.+...+|...+            +.....+.+|...|..+++||||..+++++. |++|++|++-..
T Consensus       408 ~s~n~i~lw~~ps------------~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~-DETlrfw~~f~~  463 (484)
T KOG0305|consen  408 YSENQITLWKYPS------------MKLVAELLGHTSRVLYLALSPDGETIVTGAA-DETLRFWNLFDE  463 (484)
T ss_pred             CCCCcEEEEeccc------------cceeeeecCCcceeEEEEECCCCCEEEEecc-cCcEEeccccCC
Confidence            3333333333322            2223356778888999999999999999998 899999987653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=8.7e-23  Score=205.24  Aligned_cols=202  Identities=10%  Similarity=0.030  Sum_probs=136.8

Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC---CCCEEEEEeCCccEEEEECCCCCC
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT---TGKHIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      ..+.+++.+|+| ++|++|...|.++||++.+.........|...|.++.|+.   ..++|++++.|..|+|||+.....
T Consensus       460 ~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  460 FGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             cceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence            568899999998 8999999999999999987777666677999999999974   357899999999999999987632


Q ss_pred             CCC--CccCCccceeeeccCC-cEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCccc
Q 006909          477 PSS--KQKNSVRSCEHFFSEG-VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG  553 (626)
Q Consensus       477 ~~~--~~~~~~~~~~~~~~~g-~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  553 (626)
                      +..  ......++.+.|-.+| ..-.+....|...++........+.      +.+..........++.++.-|..++++
T Consensus       539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~------~f~r~t~t~~ktTlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR------LFPRHTQTLSKTTLYDMAVDPTSKLVV  612 (1080)
T ss_pred             hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce------eccccccccccceEEEeeeCCCcceEE
Confidence            221  1222233333443332 2222333333333333222211110      011111122233478889999999999


Q ss_pred             ccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccc---ccc--ccccceEEEEecCCceEeeeeecC
Q 006909          554 SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV---RAI--SATWGLVIVTAGCDGMIKTFHNYG  621 (626)
Q Consensus       554 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--s~~dg~~ivt~g~Dg~Irvw~~~g  621 (626)
                      ++.. |.+|+|+++..+           +....+....+|.   ..+  .| .|-||||.-.|.++.+++.+.
T Consensus       613 t~cQ-Drnirif~i~sg-----------Kq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~s  672 (1080)
T KOG1408|consen  613 TVCQ-DRNIRIFDIESG-----------KQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVS  672 (1080)
T ss_pred             EEec-ccceEEEecccc-----------ceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEecc
Confidence            9999 899999999998           5555555554442   222  34 699999999999999999763

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.4e-24  Score=216.39  Aligned_cols=244  Identities=16%  Similarity=0.266  Sum_probs=199.6

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          184 IWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       184 V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      +..++|+. +.++|||++..|.|.+||+...                                          +..+.+.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------------------------------~rnk~l~  127 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS------------------------------------------IRNKLLT  127 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCcc------------------------------------------ccchhhh
Confidence            44566653 4569999999999999999751                                          1145567


Q ss_pred             eeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909          263 ELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  339 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~  339 (626)
                      .|..|...++++.|++.  ++|++||.||+|++||++......++. ....|..+.|+|..+++|+++...|.+.+||++
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence            88899999999999975  499999999999999999888777774 677999999999999999999999999999998


Q ss_pred             CCe--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          340 EKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       340 ~~~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      .-.  ...+..|.++|.|+.|+|++.+||+|+.|+.|+|||..+...... ...+.     ..+|.++.|-|..+.+|++
T Consensus       208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~-~tInT-----iapv~rVkWRP~~~~hLAt  281 (839)
T KOG0269|consen  208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK-HTINT-----IAPVGRVKWRPARSYHLAT  281 (839)
T ss_pred             CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce-eEEee-----cceeeeeeeccCccchhhh
Confidence            754  345789999999999999999999999999999999987654333 22222     2789999999998778887


Q ss_pred             EeC--CCcEEEEeCCcceeeee-ecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCCC
Q 006909          418 TSE--DSKLRILDGVDVIHKFK-GLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       418 ~s~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      ++.  |-.|+|||++.+...+. ...|...++.++|.. |...+.+++.||+|..-.+++..
T Consensus       282 csmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  282 CSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             hhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            764  67999999986544433 345888999999954 55678899999999887777653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3e-22  Score=184.64  Aligned_cols=292  Identities=13%  Similarity=0.191  Sum_probs=211.0

Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC--CCcEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI--DGKVR  334 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~--dg~v~  334 (626)
                      ++.+.+..-...|+++.|+++| .+++++.|.+++|||..+++.++++. +.-.+..++|.. ..+.++.++.  |.+||
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceE
Confidence            3445555567899999999998 88889999999999999999999986 445678888877 6677777776  88999


Q ss_pred             EEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          335 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       335 iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      ..++.+.+.++ +.+|...|++++.+|-+..+++++.|++|++||++..+++.. +..        ..-..++|.|.| -
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-l~~--------~~~pi~AfDp~G-L  153 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-LNL--------SGRPIAAFDPEG-L  153 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-Eec--------CCCcceeECCCC-c
Confidence            99999887665 779999999999999999999999999999999997665432 111        233457899998 6


Q ss_pred             EEEEEeCCCcEEEEeCCc----ceeeeeec-CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccce
Q 006909          414 RIMITSEDSKLRILDGVD----VIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC  488 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~~----~~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  488 (626)
                      ++|++...+.|++||++.    +...+... ......+.+.|||||++|+.++..+.+++.|.-+|...         ..
T Consensus       154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~---------~t  224 (311)
T KOG1446|consen  154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVK---------ST  224 (311)
T ss_pred             EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEe---------ee
Confidence            777777777999999873    34444442 34667899999999999999999999999997765200         00


Q ss_pred             eeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909          489 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  568 (626)
Q Consensus       489 ~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~  568 (626)
                      ....           ++                              ......+..|+|||+++++++. ||+|.+|++.
T Consensus       225 fs~~-----------~~------------------------------~~~~~~~a~ftPds~Fvl~gs~-dg~i~vw~~~  262 (311)
T KOG1446|consen  225 FSGY-----------PN------------------------------AGNLPLSATFTPDSKFVLSGSD-DGTIHVWNLE  262 (311)
T ss_pred             Eeec-----------cC------------------------------CCCcceeEEECCCCcEEEEecC-CCcEEEEEcC
Confidence            0000           11                              1111134468899999999888 7999999999


Q ss_pred             cCCCCCCCChhhHHHHhhhcc-CCccccccccccceEEEEecCCceEeeee--ecCccc
Q 006909          569 IDSDGYCQDPQQQRLQQQCLN-NVDDVRAISATWGLVIVTAGCDGMIKTFH--NYGLPI  624 (626)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~--~~g~p~  624 (626)
                      ++.           ....... +.++...+.- +.++..-++.|..+-+|-  .+++|-
T Consensus       263 tg~-----------~v~~~~~~~~~~~~~~~f-nP~~~mf~sa~s~l~fw~p~~~~~~~  309 (311)
T KOG1446|consen  263 TGK-----------KVAVLRGPNGGPVSCVRF-NPRYAMFVSASSNLVFWLPDEDALPA  309 (311)
T ss_pred             CCc-----------EeeEecCCCCCCcccccc-CCceeeeeecCceEEEEeccccccCC
Confidence            883           1111111 2222222221 344444555557777775  455553

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.8e-23  Score=190.25  Aligned_cols=284  Identities=17%  Similarity=0.289  Sum_probs=213.1

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCc---cCCCCCeeeecC--CCCCCc
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG---SNAKEGKIKFGK--KKSSHV  245 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~  245 (626)
                      -.+..++.||.+.|++++|++.+.+++|++.|++..||...-.-.......+.+...   ....+.......  .....-
T Consensus       180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~  259 (481)
T KOG0300|consen  180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH  259 (481)
T ss_pred             ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence            345667889999999999999999999999999999997321100000000000000   000000000000  000000


Q ss_pred             eeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCE
Q 006909          246 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~  323 (626)
                                .-..|+..+.+|.+.|.+..|...+ .+++++.|.+..+||++++..+..+ +|....+.++-+| +.++
T Consensus       260 ----------tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrL  328 (481)
T KOG0300|consen  260 ----------TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRL  328 (481)
T ss_pred             ----------eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceE
Confidence                      0135788899999999999998877 8999999999999999999999988 5888999999999 9999


Q ss_pred             EEEEeCCCcEEEEeCCCC--eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          324 FISGSIDGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +++.+.|.+.++||.+..  .+..+.+|.+.|+++.|..+. .+++|+.|.+|++||+++...++..+...       .+
T Consensus       329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtd-------S~  400 (481)
T KOG0300|consen  329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTD-------SP  400 (481)
T ss_pred             EEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecC-------Cc
Confidence            999999999999999852  244588999999999998765 68999999999999999998877766543       67


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-eeee---eecCCCCCeEEEEEcCCC--CEEEEEeCCccEEEEECCCC
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKF---KGLPKSGSQMSASFTTTG--KHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~---~~~~~~~~v~~~~~sp~g--~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +..++.+..+ ..|+.--.+..|++||+... ...+   ....|...|.+++|..+-  .-|++++-|..+.=|++...
T Consensus       401 ~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  401 ANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             cceeEeecCC-ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            8899999875 58888889999999997621 1111   234578889999996543  45889999999999998764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.7e-23  Score=213.53  Aligned_cols=240  Identities=20%  Similarity=0.312  Sum_probs=180.1

Q ss_pred             eeec-cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC--------------------------------C--------
Q 006909          262 QELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--------------------------------N--------  299 (626)
Q Consensus       262 ~~~~-~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~--------------------------------~--------  299 (626)
                      +.+. .|.+.|+++.|++|| +||+|+.|+.|+||.+..                                .        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            4455 899999999999999 999999999999997654                                0        


Q ss_pred             --------------------eeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEE
Q 006909          300 --------------------QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICY  358 (626)
Q Consensus       300 --------------------~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~  358 (626)
                                          +++..| +|...|..+.|+  ..++|++++.|.+||+|++....++..+.|.+.|+|++|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF  417 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF  417 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence                                001112 488889999999  578999999999999999999999999999999999999


Q ss_pred             ee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeee
Q 006909          359 IP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK  437 (626)
Q Consensus       359 sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~  437 (626)
                      +| |.++|++|+-||.|+||++...+.... ..++       .-|++++|.|+| +..++|+.+|.+++|++........
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~-------~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLR-------DLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEee-hhhh-------hhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEe
Confidence            99 889999999999999999987765432 1111       679999999997 8999999999999999874432222


Q ss_pred             --ecCC------CCCeEEEEEcCCC-CEEEEEeCCccEEEEECCCC--CCCCCCcc-CCccceeeeccCCcEEEEecCCC
Q 006909          438 --GLPK------SGSQMSASFTTTG-KHIISIGDDCRVYVWNYDEL--CFPSSKQK-NSVRSCEHFFSEGVSVAVQWPGI  505 (626)
Q Consensus       438 --~~~~------~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~~~--~~~~~~~~-~~~~~~~~~~~~g~~~av~~s~~  505 (626)
                        ...+      ...|+++.|.|.. ..|++.+.|..|+|+|..+.  ....++.. ........|+.+|..+..+--+.
T Consensus       489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence              1111      2379999998744 35777788999999999554  22222211 11223345566666655554444


Q ss_pred             Ccccccc
Q 006909          506 GTEQKSL  512 (626)
Q Consensus       506 ~~~l~~~  512 (626)
                      ..++|..
T Consensus       569 ~VYiW~~  575 (712)
T KOG0283|consen  569 WVYIWKN  575 (712)
T ss_pred             eEEEEeC
Confidence            4455543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=1.1e-22  Score=204.64  Aligned_cols=282  Identities=20%  Similarity=0.308  Sum_probs=219.0

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      ...+.+++.||...|..+++.+. ..++++|.||++++|+-....                                   
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~-----------------------------------   46 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQ-----------------------------------   46 (745)
T ss_pred             cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcc-----------------------------------
Confidence            44567889999999999998754 489999999999999875421                                   


Q ss_pred             CCccccccCCCceeeccCccceEE-EEEcC-C-CeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLD-LAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~-l~~s~-~-~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~  325 (626)
                              ....+.+.+|.+-|.. +++-+ + +.+++|+.|++|.+|...+..++..+ +|...|.|+.... ++. ++
T Consensus        47 --------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~i  116 (745)
T KOG0301|consen   47 --------YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LI  116 (745)
T ss_pred             --------cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eE
Confidence                    2334567788888877 77765 3 48999999999999999999998888 5999999999775 554 99


Q ss_pred             EEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          326 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      +||.|.++++|-...- ...+.+|...|.++..-|++ .+++|+.|.+|++|.-.+  . ...      ..+|...|+++
T Consensus       117 SgSWD~TakvW~~~~l-~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~--~-l~t------f~gHtD~VRgL  185 (745)
T KOG0301|consen  117 SGSWDSTAKVWRIGEL-VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT--L-LKT------FSGHTDCVRGL  185 (745)
T ss_pred             ecccccceEEecchhh-hcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc--h-hhh------hccchhheeee
Confidence            9999999999965432 22378999999999999988 899999999999997532  1 111      34456899999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCc
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV  485 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  485 (626)
                      ++-+++  .+++++.||.|++|++ +....+..++|...+.+++..+++..++++++|++++||+......... ++...
T Consensus       186 ~vl~~~--~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~-lPtts  261 (745)
T KOG0301|consen  186 AVLDDS--HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVIT-LPTTS  261 (745)
T ss_pred             EEecCC--CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEe-cCccc
Confidence            999985  7999999999999998 4444555566999999999888899999999999999999884322222 23322


Q ss_pred             cceeeeccCCcEEEEecCCCCccccccc
Q 006909          486 RSCEHFFSEGVSVAVQWPGIGTEQKSLC  513 (626)
Q Consensus       486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~  513 (626)
                      +-+..+-++|.+ +++.|++-.++++..
T Consensus       262 iWsa~~L~NgDI-vvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  262 IWSAKVLLNGDI-VVGGSDGRVRVFTVD  288 (745)
T ss_pred             eEEEEEeeCCCE-EEeccCceEEEEEec
Confidence            333345556664 566666666666544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.4e-22  Score=186.05  Aligned_cols=283  Identities=18%  Similarity=0.202  Sum_probs=197.9

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe-----eeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-----CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                      +..+.+|...|++++|+.+| +|++++.|++|++|+++...     +++.--.-+..+.+.|.|.....+++.-...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            56788999999999999998 99999999999999997532     2222212346789999994444555666667899


Q ss_pred             EEeCCCCe-------EEE------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          335 IWGVCEKR-------VVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       335 iwd~~~~~-------~~~------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +|.+...+       .+.      ...|.-.+..+-....+++|++++.|..|.+|++++..+ . .+..      ....
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L-~-~idt------nq~~  230 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLL-Q-SIDT------NQSS  230 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCcee-e-eecc------cccc
Confidence            99764322       111      123444566666777889999999999999999994332 2 2221      1245


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeC--------CcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDG--------VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~--------~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      -+..+.||+| +++++++..-.|++|..        .+....+...+|...|..++|+++...+++.|.||+++|||++-
T Consensus       231 n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  231 NYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             ccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            6678899998 89999999999999983        24556667777999999999999999999999999999999864


Q ss_pred             CC----CCCCC-------c-cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccC
Q 006909          474 LC----FPSSK-------Q-KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSL  541 (626)
Q Consensus       474 ~~----~~~~~-------~-~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  541 (626)
                      ..    -+...       + .+....-+..+|+|.++|+++..+-..+..-...            .......-++..+.
T Consensus       310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~------------~~~~~e~~h~~~Is  377 (420)
T KOG2096|consen  310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK------------DYPELEDIHSTTIS  377 (420)
T ss_pred             eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc------------cchhHHHhhcCcee
Confidence            31    11110       0 1112224567788888777754443332221110            11123455677899


Q ss_pred             CccccCCCCcccccCCCCCCCCCCC
Q 006909          542 GSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       542 ~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                      +++|++||+++++.+  |..+++..
T Consensus       378 ~is~~~~g~~~atcG--dr~vrv~~  400 (420)
T KOG2096|consen  378 SISYSSDGKYIATCG--DRYVRVIR  400 (420)
T ss_pred             eEEecCCCcEEeeec--ceeeeeec
Confidence            999999999999987  46666653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=2.2e-22  Score=182.76  Aligned_cols=225  Identities=20%  Similarity=0.363  Sum_probs=174.9

Q ss_pred             ccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          178 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       178 ~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      +.|.+.|+++...+ .|+|+++|+.||.|.+||+++......     ..+++  +.            .      .+   
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-----s~li~--k~------------~------c~---   91 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-----SGLIA--KH------------K------CI---   91 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh-----cccee--he------------e------ee---
Confidence            35999999999987 689999999999999999987321000     00000  00            0      00   


Q ss_pred             cCCCceeeccCccceEEEEEcC--CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCC--CCEEEEEeCCCc
Q 006909          257 EESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID--DNYFISGSIDGK  332 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~s~dg~  332 (626)
                        -....-.+|.-.|..+.|-|  .|.+.+++.|.+++|||..+-+....|...+.|.+-+++|..  ..++++|..+-.
T Consensus        92 --v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~  169 (397)
T KOG4283|consen   92 --VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQ  169 (397)
T ss_pred             --ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCc
Confidence              01122347999999999987  469999999999999999999999999999999999999843  346788888889


Q ss_pred             EEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCE-EEEEecCCcEEEEEcCCCceeeeEEeecc--------ccccCCCCe
Q 006909          333 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHD--------RKKTSGNKI  402 (626)
Q Consensus       333 v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~~~~i  402 (626)
                      |++.|+.+|.... +.+|.+.|.++.|+|...+ |++|+.||.|++||++...--...+..+.        ....|.+.+
T Consensus       170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv  249 (397)
T KOG4283|consen  170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV  249 (397)
T ss_pred             EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence            9999999988764 7899999999999997765 67899999999999986533232222222        234577899


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEeCCcce
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRILDGVDVI  433 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~  433 (626)
                      .+++|+.++ .++++.+.|..+++|+..+..
T Consensus       250 ngla~tSd~-~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  250 NGLAWTSDA-RYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             eeeeecccc-hhhhhccCccceEEeecccCc
Confidence            999999998 799999999999999965433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6e-22  Score=190.52  Aligned_cols=280  Identities=15%  Similarity=0.186  Sum_probs=219.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      .+.|++|.|+|....|++|+.||+++||.+....                                           ...
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-------------------------------------------N~~  249 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------------------------------------------NPK  249 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCcc-------------------------------------------Chh
Confidence            5789999999999999999999999999987521                                           234


Q ss_pred             ceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec---C-CCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          261 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---H-HNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~---~-~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                      ++.+.-...+|.+.+|.|+|  .+++++....++.||+.+.+..+.-.   + ...+.....+| ++++|+..+..|.|.
T Consensus       250 lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~  328 (514)
T KOG2055|consen  250 LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIH  328 (514)
T ss_pred             heeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEE
Confidence            56666667899999999988  68899999999999999887655432   2 23577788899 999999999999999


Q ss_pred             EEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          335 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       335 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      +....+++.+......+.|..++|+.+|+.|++.+.+|.|.+||++...+.. .+.-.+.     -.-++++.++++ .+
T Consensus       329 lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~-rf~D~G~-----v~gts~~~S~ng-~y  401 (514)
T KOG2055|consen  329 LLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLH-RFVDDGS-----VHGTSLCISLNG-SY  401 (514)
T ss_pred             eehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEE-EEeecCc-----cceeeeeecCCC-ce
Confidence            9999999999989999999999999999999999999999999999885433 3333321     234677888987 69


Q ss_pred             EEEEeCCCcEEEEeCCcc------eeeeeecCCCCCeEEEEEcCCCCEEEEEeC--CccEEEEECCCC----CCCCCCcc
Q 006909          415 IMITSEDSKLRILDGVDV------IHKFKGLPKSGSQMSASFTTTGKHIISIGD--DCRVYVWNYDEL----CFPSSKQK  482 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~--dg~I~iwd~~~~----~~~~~~~~  482 (626)
                      ||+|+..|.|.|||..+.      ........-...|+++.|+||++.||.+|.  +..+++-.+.+.    ..|.....
T Consensus       402 lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~  481 (514)
T KOG2055|consen  402 LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK  481 (514)
T ss_pred             EEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc
Confidence            999999999999996532      222222224567999999999999988874  678999888875    22333334


Q ss_pred             CCccceeeeccCCcEEEEecCCCCccccc
Q 006909          483 NSVRSCEHFFSEGVSVAVQWPGIGTEQKS  511 (626)
Q Consensus       483 ~~~~~~~~~~~~g~~~av~~s~~~~~l~~  511 (626)
                      -.-..|++|+|.|-++|++--.....||.
T Consensus       482 vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  482 VGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             ccceEEEEecCCCceEEeecCCCceeeEe
Confidence            44567788888888888774444444443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=8.1e-23  Score=204.03  Aligned_cols=316  Identities=14%  Similarity=0.194  Sum_probs=235.7

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ....++.|.+.|+.+....+|+.|+++|.|-+|++|+...+.                                      
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--------------------------------------  106 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--------------------------------------  106 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------------------------------------
Confidence            356678999999999999999999999999999999987632                                      


Q ss_pred             cccccCCCceeeccCccceEEEEE-cCCC-eEEEEeCCCcEEEeccCCC--eeeEee----------cCCCCeEEEEEee
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAW-SNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF----------DHHNYVTCVQFNP  318 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~-s~~~-~l~s~s~d~~v~iwd~~~~--~~~~~~----------~~~~~v~~~~~~p  318 (626)
                           ..+..++..|...|.|+++ .+++ .+++|+-|+.|.+||++++  +.+..+          ++...|.+++.++
T Consensus       107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence                 1346778889999999999 5555 8999999999999999987  333332          3667899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCC-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc
Q 006909          319 IDDNYFISGSIDGKVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  397 (626)
Q Consensus       319 ~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  397 (626)
                       ++..|++|+..+.+++||.+++ +++.+.+|...|.++..++||..+++++.||+|++||+...++... +..|     
T Consensus       182 -t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T-~~vH-----  254 (735)
T KOG0308|consen  182 -TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT-YIVH-----  254 (735)
T ss_pred             -cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee-EEec-----
Confidence             8899999999999999999985 4667889999999999999999999999999999999987776544 3333     


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  477 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~  477 (626)
                       ...|.++..+|+= ..+.+|+.||.|..=|+++............+|..+..+...+-+-+++.|+.|+-|...-..  
T Consensus       255 -~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~--  330 (735)
T KOG0308|consen  255 -KEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI--  330 (735)
T ss_pred             -cCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc--
Confidence             3669999999885 799999999999999988643333333356677777776555555667789999999876421  


Q ss_pred             CCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCC
Q 006909          478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW  557 (626)
Q Consensus       478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~  557 (626)
                                  ++++.|.... .+..........              ...+.....++..+...+.-.|-+.+.+-.-
T Consensus       331 ------------~l~~s~~~~~-~~T~~~~~~~~~--------------~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa  383 (735)
T KOG0308|consen  331 ------------ALSVSGDLDF-FSTDSNNHSCDL--------------TNTPDSVIPGGAAIKKHAMLNDKRHVLTKDA  383 (735)
T ss_pred             ------------ccccCCCCCc-ccccCCCccccc--------------cCCCceeccCchhhhhhhhhcCcceEeeecC
Confidence                        2222232222 111111111110              0011112223334666677778888888666


Q ss_pred             CCCCCCCCCcccC
Q 006909          558 PAEKLPLWDVTID  570 (626)
Q Consensus       558 ~d~~i~vwd~~~~  570 (626)
                       .|.+.+||+-..
T Consensus       384 -~gnv~lwDIl~~  395 (735)
T KOG0308|consen  384 -KGNVALWDILAC  395 (735)
T ss_pred             -CCCEEEEEeeee
Confidence             688999998765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=2.5e-22  Score=202.02  Aligned_cols=341  Identities=16%  Similarity=0.185  Sum_probs=231.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909          184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  263 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (626)
                      .-++.|+|....|.+.-.|..++|||+.......+.                        ...+.....+|.++.-|.  
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~------------------------~s~lyHS~ciW~Ve~~p~--  380 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC------------------------SSMLYHSACIWDVENLPC--  380 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccce------------------------eeeeeccceeeeeccccc--
Confidence            347889999999999999999999999874321110                        111112223344333222  


Q ss_pred             eccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCC---eeeEe-----------------------------------e
Q 006909          264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN---QCLNV-----------------------------------F  305 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~---~~~~~-----------------------------------~  305 (626)
                       .-|...-.   .-|.+.+++|+.|++|++||+..+   +..+.                                   .
T Consensus       381 -nv~~~~~a---clp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~  456 (1080)
T KOG1408|consen  381 -NVHSPTAA---CLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTC  456 (1080)
T ss_pred             -cccCcccc---cCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhc
Confidence             11222111   124567999999999999998752   11110                                   1


Q ss_pred             cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE-EEeccCCCCeEEEEEee---CCCEEEEEecCCcEEEEEcCC
Q 006909          306 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASG  381 (626)
Q Consensus       306 ~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp---~g~~l~~g~~dg~i~i~d~~~  381 (626)
                      .....+.+++.+| ++++|++|..-|++++|++..-+. .....|...|.|+.|+.   ..++|++++.|.-|++||+..
T Consensus       457 d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  457 DSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             CcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            1234589999999 999999999999999999987554 45778999999999986   357899999999999999987


Q ss_pred             CceeeeEEeeccccccCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEeCC--cceeeeeecC---CCCCeEEEEEcCCCC
Q 006909          382 NDLKLEKVDFHDRKKTSGNKITGIQFSRDES-QRIMITSEDSKLRILDGV--DVIHKFKGLP---KSGSQMSASFTTTGK  455 (626)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~~l~~~s~dg~i~iwd~~--~~~~~~~~~~---~~~~v~~~~~sp~g~  455 (626)
                      +......+      ..|...|+++.|...|. ..+++++.|..|.+--.+  .....+..+.   ....+..++..|+.+
T Consensus       536 ny~l~qtl------d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k  609 (1080)
T KOG1408|consen  536 NYDLVQTL------DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK  609 (1080)
T ss_pred             ccchhhhh------cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc
Confidence            66544433      34458999999987653 467778888776543222  1122222221   245688999999999


Q ss_pred             EEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccC
Q 006909          456 HIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRD  535 (626)
Q Consensus       456 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~  535 (626)
                      ++++++.|..|+||++++++........       -..+|..+-+...|.|.+++..+++..-. +.....-+....+.+
T Consensus       610 ~v~t~cQDrnirif~i~sgKq~k~FKgs-------~~~eG~lIKv~lDPSgiY~atScsdktl~-~~Df~sgEcvA~m~G  681 (1080)
T KOG1408|consen  610 LVVTVCQDRNIRIFDIESGKQVKSFKGS-------RDHEGDLIKVILDPSGIYLATSCSDKTLC-FVDFVSGECVAQMTG  681 (1080)
T ss_pred             eEEEEecccceEEEeccccceeeeeccc-------ccCCCceEEEEECCCccEEEEeecCCceE-EEEeccchhhhhhcC
Confidence            9999999999999999998433222111       11235555555556666665555442211 111111233455788


Q ss_pred             CCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          536 SERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       536 ~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      |+..|+++.|++|-+.|.+++. |+.|+||.++..
T Consensus       682 HsE~VTG~kF~nDCkHlISvsg-DgCIFvW~lp~~  715 (1080)
T KOG1408|consen  682 HSEAVTGVKFLNDCKHLISVSG-DGCIFVWKLPLT  715 (1080)
T ss_pred             cchheeeeeecccchhheeecC-CceEEEEECchh
Confidence            9999999999999999999988 899999998753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1.8e-22  Score=195.41  Aligned_cols=268  Identities=17%  Similarity=0.286  Sum_probs=215.3

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      +|..-|.++.+|...+++.||+. |.|+|||+.....                                          .
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~------------------------------------------k  453 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN------------------------------------------K  453 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC------------------------------------------C
Confidence            79999999999999999999986 6799999976211                                          2


Q ss_pred             CCceeec--cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          259 SPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       259 ~~~~~~~--~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                      .|+..+.  .....|.++...||| .|++|+.-.++.|||+..........   ..-.+.+++.+| |.+..+++..||.
T Consensus       454 ~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGn  532 (705)
T KOG0639|consen  454 SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGN  532 (705)
T ss_pred             CccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCc
Confidence            2333332  235678899999998 89999999999999997665433332   223577889999 9999999999999


Q ss_pred             EEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          333 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       333 v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      |.|||+....++. +.+|.+.+.||.++++|..|.+|+-|.+++.||++....... ..+       ...|.++.++|.+
T Consensus       533 I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq-hdF-------~SQIfSLg~cP~~  604 (705)
T KOG0639|consen  533 IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-HDF-------SSQIFSLGYCPTG  604 (705)
T ss_pred             EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh-hhh-------hhhheecccCCCc
Confidence            9999999877664 889999999999999999999999999999999998765432 111       2679999999998


Q ss_pred             CcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeee
Q 006909          412 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF  491 (626)
Q Consensus       412 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  491 (626)
                       .++++|-.++.+.|...... ..+..+-|...|.++.|.+.|+++++.+.|+-+..|...-+...........+.++.+
T Consensus       605 -dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI  682 (705)
T KOG0639|consen  605 -DWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI  682 (705)
T ss_pred             -cceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeee
Confidence             79999999999999986544 4455566899999999999999999999999999999988755544444444455567


Q ss_pred             ccCCcEEEE
Q 006909          492 FSEGVSVAV  500 (626)
Q Consensus       492 ~~~g~~~av  500 (626)
                      +.+..++..
T Consensus       683 S~ddkyIVT  691 (705)
T KOG0639|consen  683 SFDDKYIVT  691 (705)
T ss_pred             ccCceEEEe
Confidence            777666444

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=1.3e-22  Score=195.31  Aligned_cols=220  Identities=19%  Similarity=0.329  Sum_probs=178.7

Q ss_pred             cccccccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      ....-+|.||++.=+.++|++... +|++|+.|++|++||+......                                 
T Consensus       167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~---------------------------------  213 (422)
T KOG0264|consen  167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE---------------------------------  213 (422)
T ss_pred             CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC---------------------------------
Confidence            344457889999889999999655 8999999999999999863210                                 


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCC--CeeeEee-cCCCCeEEEEEeeCCCCEE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPIDDNYF  324 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~--~~~~~~~-~~~~~v~~~~~~p~~~~~l  324 (626)
                           ...-.+...+.+|...|..++|++-  ..+++++.|+.+.|||+++  .++.... .|...|+|++|+|.++..|
T Consensus       214 -----~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il  288 (422)
T KOG0264|consen  214 -----DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL  288 (422)
T ss_pred             -----CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence                 0013456788899999999999985  3899999999999999995  3333333 4999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCC--CeEEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceee----------eEEee
Q 006909          325 ISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKL----------EKVDF  391 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~--~~~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~----------~~~~~  391 (626)
                      |+||.|++|.+||+|.  ..+..+.+|...|..+.|+|. ...|++++.|+.+.+||+..-....          +.+-.
T Consensus       289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~  368 (422)
T KOG0264|consen  289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI  368 (422)
T ss_pred             EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEE
Confidence            9999999999999986  456778999999999999995 4678889999999999996433221          11111


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          392 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                         ..+|...|..+.|+|+.+..|++.+.|+.+.||....
T Consensus       369 ---HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  369 ---HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ---ecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence               2356789999999999998999999999999999664

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=2.3e-21  Score=177.05  Aligned_cols=241  Identities=16%  Similarity=0.241  Sum_probs=195.1

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      ....+....|.++|.+++|+.||..+++|+.|+.+++||+.++                                     
T Consensus        62 ~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-------------------------------------  104 (347)
T KOG0647|consen   62 QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-------------------------------------  104 (347)
T ss_pred             cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-------------------------------------
Confidence            3444566789999999999999999999999999999999973                                     


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                               .+..+..|.++|..+.|-+..   .|+|||.|++|+.||.+....+.++..++.+.++..   -..+++.+
T Consensus       105 ---------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv---~~pm~vVa  172 (347)
T KOG0647|consen  105 ---------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV---LYPMAVVA  172 (347)
T ss_pred             ---------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc---cCceeEEE
Confidence                     356677899999999998642   799999999999999999999999999999999987   34688888


Q ss_pred             eCCCcEEEEeCCCCeEEE---eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeecccccc---CCC
Q 006909          328 SIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT---SGN  400 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~---~~~  400 (626)
                      ..++.|.+|+++.+....   ....+-.+.|++..++....+.|+-.|.+.+..+........ .+..|.....   .-.
T Consensus       173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY  252 (347)
T KOG0647|consen  173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY  252 (347)
T ss_pred             ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence            899999999997755332   234566789999999999999999999999999887533211 3444432111   124


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      .|.+|+|+|.- ..|++++.||++.+||-....+......+..+|++.+|+.+|.+++-+.
T Consensus       253 aVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  253 AVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             EecceEeeccc-ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            68899999985 6999999999999999664444444466899999999999999887653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=5.4e-21  Score=196.19  Aligned_cols=363  Identities=13%  Similarity=0.169  Sum_probs=262.3

Q ss_pred             EEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          184 IWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       184 V~~l~fspd--g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      |+++. +|.  -+.++.|+.+|.++||++.+                                             ++.+
T Consensus       162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt---------------------------------------------~K~v  195 (910)
T KOG1539|consen  162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRT---------------------------------------------GKVV  195 (910)
T ss_pred             eeeEe-cchhheeeEEEeecCCcEEEEEecc---------------------------------------------CcEE
Confidence            77776 453  34788899999999999998                                             4568


Q ss_pred             eeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEeecCC-CCeEEEEEeeCCCC-EEEEEeCCCcEEEEeC
Q 006909          262 QELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN-YFISGSIDGKVRIWGV  338 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~p~~~~-~l~s~s~dg~v~iwd~  338 (626)
                      .++.++...|+++.-+|- ..++.|..+|+|.+++++.++.+.+|+|. +.|++++|.. ||+ .+++|+..|.+.+||+
T Consensus       196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt-DG~p~las~~~~G~m~~wDL  274 (910)
T KOG1539|consen  196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT-DGNPLLASGRSNGDMAFWDL  274 (910)
T ss_pred             EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc-CCCeeEEeccCCceEEEEEc
Confidence            899999999999998885 48999999999999999999999999986 9999999998 665 5677777799999999


Q ss_pred             CCCeEEE--eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          339 CEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       339 ~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      ...++..  ...|.+.|....|.|....+++++.|..+++|-..++......+..   ..+|..+..++.|......++.
T Consensus       275 e~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~---R~GHs~Pp~~irfy~~~g~~il  351 (910)
T KOG1539|consen  275 EKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRS---RGGHSAPPSCIRFYGSQGHFIL  351 (910)
T ss_pred             CCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheee---ccCCCCCchheeeeccCcEEEE
Confidence            9887765  3367789999999999999999999999999987755543322222   3456678888888744447888


Q ss_pred             EEeCCCcEEEEeCC-----------------------------------------------------------------c
Q 006909          417 ITSEDSKLRILDGV-----------------------------------------------------------------D  431 (626)
Q Consensus       417 ~~s~dg~i~iwd~~-----------------------------------------------------------------~  431 (626)
                      +++.|++.+.+++.                                                                 +
T Consensus       352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n  431 (910)
T KOG1539|consen  352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN  431 (910)
T ss_pred             ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence            88888877666421                                                                 0


Q ss_pred             cee-eeeec-----CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCC
Q 006909          432 VIH-KFKGL-----PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  505 (626)
Q Consensus       432 ~~~-~~~~~-----~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~  505 (626)
                      ... .+...     .....+++++.++.|++.+.|...|.|-+|+++++........       ..-+++.+.+++-...
T Consensus       432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-------~~ah~~~V~gla~D~~  504 (910)
T KOG1539|consen  432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-------SPAHKGEVTGLAVDGT  504 (910)
T ss_pred             cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-------CccccCceeEEEecCC
Confidence            000 00000     0125678899999999999999999999999999843322210       0123455666665555


Q ss_pred             CcccccccCCCccccCccccccCCCC-cccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHH
Q 006909          506 GTEQKSLCSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ  584 (626)
Q Consensus       506 ~~~l~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  584 (626)
                      +..+.+.+.++.   ..+|+--.... .....+..+..+..+.....++.+-. +..|++.|..+.           +..
T Consensus       505 n~~~vsa~~~Gi---lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d-df~I~vvD~~t~-----------kvv  569 (910)
T KOG1539|consen  505 NRLLVSAGADGI---LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD-DFSIRVVDVVTR-----------KVV  569 (910)
T ss_pred             CceEEEccCcce---EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC-ceeEEEEEchhh-----------hhh
Confidence            555555444433   44555432221 11112333555555666666666655 688999999887           556


Q ss_pred             hhhccCCcccc--ccccccceEEEEecCCceEeeeee
Q 006909          585 QQCLNNVDDVR--AISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       585 ~~~~~~~~~~~--~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                      +.+..|...++  .||+ ||++|++|+.|++||+|++
T Consensus       570 R~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  570 REFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             HHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEec
Confidence            66666666665  4566 8999999999999999995

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=7.6e-22  Score=185.19  Aligned_cols=256  Identities=23%  Similarity=0.322  Sum_probs=196.5

Q ss_pred             ccccCcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          178 QAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~--~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      -+|.+.|+.+.-++-|+  +.|+=+..|.|.||++...-..   +...+                    .      .+-.
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~---l~~~~--------------------~------~~~~  198 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNA---LSEPG--------------------L------EVKD  198 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhh---hcCcc--------------------c------cccc
Confidence            37899999999888665  6677788999999998752110   00000                    0      0001


Q ss_pred             ccCCCceeeccCccceEEEEEcC--CCeEEEEeCCCcEEEeccCCCeeeE----eecCCCCeEEEEEeeCCCCEEEEEeC
Q 006909          256 IEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLN----VFDHHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~--~~~l~s~s~d~~v~iwd~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                      ....|+.++.+|...=+.|+|||  .|.|++|..-+.|++|...++.-..    ...|+..|..++|+|.....|++||.
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence            23678999999999999999998  4689999999999999998765432    22599999999999988899999999


Q ss_pred             CCcEEEEeCCCC---eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee--eEEeeccccccCCCCeEE
Q 006909          330 DGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       330 dg~v~iwd~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~i~~  404 (626)
                      ||+|+|||++.+   ..+....|...|+.|+|+..-.+|++|+.||+++|||++..+...  ..+..      |..+|++
T Consensus       279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~------Hk~pIts  352 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY------HKAPITS  352 (440)
T ss_pred             CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe------ccCCeeE
Confidence            999999999987   566778999999999999988899999999999999998765442  23333      3589999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEeCCc------------------ceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCcc
Q 006909          405 IQFSRDESQRIMITSEDSKLRILDGVD------------------VIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCR  465 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~  465 (626)
                      +.|+|.....|++++.|.+|.|||+.-                  +-+.+-.+.....+..+.|++.- .+|++.+.|| 
T Consensus       353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-  431 (440)
T KOG0302|consen  353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-  431 (440)
T ss_pred             EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-
Confidence            999998878999999999999999641                  01122223234567778898754 4677777777 


Q ss_pred             EEEE
Q 006909          466 VYVW  469 (626)
Q Consensus       466 I~iw  469 (626)
                      +.||
T Consensus       432 fnVf  435 (440)
T KOG0302|consen  432 FNVF  435 (440)
T ss_pred             eeEE
Confidence            4444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=8.8e-22  Score=194.79  Aligned_cols=290  Identities=17%  Similarity=0.348  Sum_probs=212.0

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcc----------eeeeecCCCCCc--cCCCCCeeeec
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA----------SCKSFTDDGGFG--SNAKEGKIKFG  238 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~----------~~~~~~~~~~~~--~~~~~~~~~~~  238 (626)
                      ..+...++||++.|.|+...|.|.+||+|+.||+|+||.+.++.+          .++.|.+.....  +.+....+.+.
T Consensus       390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence            345566789999999999999999999999999999999999866          466677665532  22222222211


Q ss_pred             CCCCC-C--------ceeecCC--------cccccc-----CCCceeeccCccceEEEEEcCCC-eEEEEeC---CCcEE
Q 006909          239 KKKSS-H--------VPVVIPD--------EVFQIE-----ESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVR  292 (626)
Q Consensus       239 ~~~~~-~--------~~~~~~~--------~~~~~~-----~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~---d~~v~  292 (626)
                      ..... .        .....+.        -.|...     ..-++..-.|...|..+.|+..| +|++..-   ...|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            11100 0        0000000        022211     11234555789999999999888 8887654   35699


Q ss_pred             EeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEec
Q 006909          293 MWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSI  370 (626)
Q Consensus       293 iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~  370 (626)
                      |.++.......-|. ..+.|.++.|+| ...+|++++. ..|+|||+..++++. +......|..++.+|.|..|++|+.
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence            99998777766664 677899999999 7777777664 689999998876654 4555677999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-------c----ceeeeeec
Q 006909          371 TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-------D----VIHKFKGL  439 (626)
Q Consensus       371 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-------~----~~~~~~~~  439 (626)
                      |+.+..||+.-...++..+..|      ...+++++|++.- .++++|+.||++.|+...       +    ++..+.++
T Consensus       628 d~k~~WfDldlsskPyk~lr~H------~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH  700 (733)
T KOG0650|consen  628 DKKMCWFDLDLSSKPYKTLRLH------EKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH  700 (733)
T ss_pred             CCeeEEEEcccCcchhHHhhhh------hhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence            9999999998776666555444      4789999999986 589999999999998632       1    22333332


Q ss_pred             C--CCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909          440 P--KSGSQMSASFTTTGKHIISIGDDCRVYVW  469 (626)
Q Consensus       440 ~--~~~~v~~~~~sp~g~~l~s~s~dg~I~iw  469 (626)
                      .  ....|..+.|+|...+|++++.||+|++|
T Consensus       701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeecccceEeecccCCCceEEecCCCceEEee
Confidence            1  22458889999999999999999999998

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1.2e-20  Score=189.39  Aligned_cols=251  Identities=15%  Similarity=0.159  Sum_probs=179.2

Q ss_pred             ccccccccCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~L-atgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      .+.+.+|.. +.+++|+|+|+.+ ++++.++.|++||..+++.                                     
T Consensus        24 ~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-------------------------------------   65 (300)
T TIGR03866        24 TRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-------------------------------------   65 (300)
T ss_pred             EEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-------------------------------------
Confidence            344544543 6789999999976 5677899999999886322                                     


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eEE-EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                              ...+..+. .+..++|+|++ .++ +++.++.|++||+.+++.+..+.+...+.+++|+| ++.++++++.+
T Consensus        66 --------~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~  135 (300)
T TIGR03866        66 --------IGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSET  135 (300)
T ss_pred             --------EEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecC
Confidence                    22233332 24578899987 454 45668999999999988888887666678999999 99999988876


Q ss_pred             C-cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccc-cccCCCCeEEEEE
Q 006909          331 G-KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDR-KKTSGNKITGIQF  407 (626)
Q Consensus       331 g-~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~  407 (626)
                      + .+.+||..+++..........+.+++|+|+|+.+++++ .++.|++||+.+.+.... +..... ..........++|
T Consensus       136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~  214 (300)
T TIGR03866       136 TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK-ITFEIPGVHPEAVQPVGIKL  214 (300)
T ss_pred             CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee-eeecccccccccCCccceEE
Confidence            5 46778998877765444445667899999999886554 589999999987754322 222110 0001123457889


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCC
Q 006909          408 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL  474 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~  474 (626)
                      +|++...+++...++.|.+||..+....... .+...+.+++|+|+|++|+++ +.++.|.+||+.++
T Consensus       215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~  281 (300)
T TIGR03866       215 TKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL  281 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            9998443455566778999998754332221 234578899999999999886 46899999999986

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=1.4e-21  Score=196.85  Aligned_cols=236  Identities=26%  Similarity=0.446  Sum_probs=195.1

Q ss_pred             cccccccCcEEE-EEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          175 QEIQAHKGCIWT-LKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       175 ~~l~~H~~~V~~-l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ..+.+|.+-|.+ ++|-+ ++..|++|+.|++|.+|....                                        
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~----------------------------------------   90 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ----------------------------------------   90 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCC----------------------------------------
Confidence            456789998888 88875 455799999999999999886                                        


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                           ..|+..+.||...|.+++...++.++|||.|.++++|-..  ++.... +|...|++++..| .+ .++||+.|.
T Consensus        91 -----~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDK  161 (745)
T KOG0301|consen   91 -----AEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP-EN-TYVTGSADK  161 (745)
T ss_pred             -----CCchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecC-CC-cEEeccCcc
Confidence                 6789999999999999998888889999999999999874  444444 5999999999998 54 999999999


Q ss_pred             cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          332 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      +|++|.- ...+..+.+|.+.|..+++-+++ .|++++.||.|++|++.+..+ .+   ++    +|...|.++...+++
T Consensus       162 tIklWk~-~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l-~~---~~----ghtn~vYsis~~~~~  231 (745)
T KOG0301|consen  162 TIKLWKG-GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVL-LE---MH----GHTNFVYSISMALSD  231 (745)
T ss_pred             eeeeccC-CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCcee-ee---ee----ccceEEEEEEecCCC
Confidence            9999976 33445578899999999998876 588999999999999955433 22   22    345789999966654


Q ss_pred             CcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          412 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       412 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                       ..++++++|++++||+...+.+.+..  ....++++.+-++|. |++|+.||.||||....
T Consensus       232 -~~Ivs~gEDrtlriW~~~e~~q~I~l--PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  232 -GLIVSTGEDRTLRIWKKDECVQVITL--PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             -CeEEEecCCceEEEeecCceEEEEec--CccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence             69999999999999998877777765  345889999888887 56677899999999873

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1e-21  Score=188.87  Aligned_cols=280  Identities=13%  Similarity=0.176  Sum_probs=211.3

Q ss_pred             ccceEEEEEcCCC-eEEEEeCCCcEEEeccCC--CeeeEeec-CCCCeEEEEEeeCCCC-EEEEEeCCCcEEEEeCCCCe
Q 006909          268 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--NQCLNVFD-HHNYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKR  342 (626)
Q Consensus       268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~--~~~~~~~~-~~~~v~~~~~~p~~~~-~l~s~s~dg~v~iwd~~~~~  342 (626)
                      .+.|+++.|+|.. .|++|+.|++++||.+..  +..++.+. ...+|.+++|.| +|. .+++++....++.||+.+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence            4689999999987 899999999999998863  34444444 456999999999 777 89999999999999999887


Q ss_pred             EEEeccC----CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909          343 VVDWADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  418 (626)
Q Consensus       343 ~~~~~~~----~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~  418 (626)
                      +..+...    ...+....++|++++|++.+..|.|.+....++..... +...       +.|..++|+.++ +.|+++
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s-~Kie-------G~v~~~~fsSds-k~l~~~  362 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS-FKIE-------GVVSDFTFSSDS-KELLAS  362 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe-eeec-------cEEeeEEEecCC-cEEEEE
Confidence            7654332    23577788999999999999999999999888776433 3332       689999999997 788888


Q ss_pred             eCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC-------CccCCcccee
Q 006909          419 SEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-------KQKNSVRSCE  489 (626)
Q Consensus       419 s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~-------~~~~~~~~~~  489 (626)
                      +.+|.|.+||++..  ...+... ..-.-++++.+++|.|||+||+.|.|.|||.++......       ......++.+
T Consensus       363 ~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl  441 (514)
T KOG2055|consen  363 GGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL  441 (514)
T ss_pred             cCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence            99999999998854  3333332 122346778889999999999999999999876421111       1222345667


Q ss_pred             eeccCCcEEEEecC--CCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909          490 HFFSEGVSVAVQWP--GIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV  567 (626)
Q Consensus       490 ~~~~~g~~~av~~s--~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~  567 (626)
                      .|+|++.++|++-.  ++...|..+.+...   +..|..      .-..-.++++++|||.|-+++.+.. .+++.+|.+
T Consensus       442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TV---FsNfP~------~n~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~kL  511 (514)
T KOG2055|consen  442 QFNHDAQILAIASRVKKNALRLVHVPSCTV---FSNFPT------SNTKVGHVTCMAFSPNSGYLAVGNE-AGRVHLFKL  511 (514)
T ss_pred             eeCcchhhhhhhhhccccceEEEeccceee---eccCCC------CCCcccceEEEEecCCCceEEeecC-CCceeeEee
Confidence            78888888887754  45556666666543   233333      3333456999999999999999998 699999976


Q ss_pred             c
Q 006909          568 T  568 (626)
Q Consensus       568 ~  568 (626)
                      .
T Consensus       512 ~  512 (514)
T KOG2055|consen  512 H  512 (514)
T ss_pred             c
Confidence            4

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=8.5e-21  Score=173.78  Aligned_cols=251  Identities=23%  Similarity=0.351  Sum_probs=186.9

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .+|.+-|+++.|.+.|+.+|||+.|++|+|||..+...                                         .
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------------------------~   48 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------------------------T   48 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------------------------c
Confidence            48999999999999999999999999999999754211                                         0


Q ss_pred             CCCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccC-----C-C-e--eeEee-cCCCCeEEEEEeeC-CCCE
Q 006909          258 ESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVG-----C-N-Q--CLNVF-DHHNYVTCVQFNPI-DDNY  323 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~-----~-~-~--~~~~~-~~~~~v~~~~~~p~-~~~~  323 (626)
                      .........|.+.|..+.|.+.  | .+++|+.|+++.||.=.     . + +  ...++ .....|+.+.|.|. -|-.
T Consensus        49 W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk  128 (361)
T KOG2445|consen   49 WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK  128 (361)
T ss_pred             eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE
Confidence            2234567789999999999753  4 89999999999999641     1 1 1  11222 46778999999983 3567


Q ss_pred             EEEEeCCCcEEEEeCCCCe-EEE-------------eccCCCCeEEEEEeeC---CCEEEEEecC-----CcEEEEEcCC
Q 006909          324 FISGSIDGKVRIWGVCEKR-VVD-------------WADVRDVISAICYIPD---GKGFIVGSIT-----GTCHFYKASG  381 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~-~~~-------------~~~~~~~i~~i~~sp~---g~~l~~g~~d-----g~i~i~d~~~  381 (626)
                      +++++.||.+|||+...-- +..             ...+..+..|+.|+|.   ..+|++|+.+     +.++||....
T Consensus       129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE  208 (361)
T ss_pred             EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence            9999999999999875421 111             1124566789999984   4678888876     5788888766


Q ss_pred             CceeeeEEeeccccccCCCCeEEEEEcCCCC---cEEEEEeCCCcEEEEeCCc-------------------ceeee-ee
Q 006909          382 NDLKLEKVDFHDRKKTSGNKITGIQFSRDES---QRIMITSEDSKLRILDGVD-------------------VIHKF-KG  438 (626)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~---~~l~~~s~dg~i~iwd~~~-------------------~~~~~-~~  438 (626)
                      +......   ......+..+|+.++|.|+-+   ..|++++.|| |+||.+..                   .+..+ ..
T Consensus       209 ~~rKw~k---va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~  284 (361)
T KOG2445|consen  209 NGRKWLK---VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL  284 (361)
T ss_pred             Ccceeee---ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence            5533321   122335679999999999732   4789999999 99998652                   11111 23


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          439 LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       439 ~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      ..|.+.|..+.|.-.|..|++.|+||.|++|...-
T Consensus       285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            45889999999999999999999999999998653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=4.7e-21  Score=175.84  Aligned_cols=277  Identities=18%  Similarity=0.226  Sum_probs=211.3

Q ss_pred             CccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909          267 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  345 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~  345 (626)
                      ....|+.+.|+|.+ .|+.++.||++++||+........+.|..++.+++|.  +...+++|+.||.|+.+|+.++....
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeecc--CCceEEEeccCceEEEEEecCCccee
Confidence            35789999999865 8888889999999999999888889999999999998  47889999999999999999999999


Q ss_pred             eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 006909          346 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  425 (626)
Q Consensus       346 ~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~  425 (626)
                      +..|..+|.+|.+++....+++|+.|++|++||.+.......   ..     ....|.++....   ..|++|+.+..+.
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~---~d-----~~kkVy~~~v~g---~~LvVg~~~r~v~  158 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT---FD-----QGKKVYCMDVSG---NRLVVGTSDRKVL  158 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc---cc-----cCceEEEEeccC---CEEEEeecCceEE
Confidence            999999999999999888999999999999999987332111   11     125788888765   4899999999999


Q ss_pred             EEeCCcceeeeee--cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecC
Q 006909          426 ILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  503 (626)
Q Consensus       426 iwd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s  503 (626)
                      +||+++....++.  ..-.-.+.++++-|++.-.+.++-||.|.+=.++..  +.....+....|..-..          
T Consensus       159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s--~~~~skkyaFkCHr~~~----------  226 (323)
T KOG1036|consen  159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS--EEAQSKKYAFKCHRLSE----------  226 (323)
T ss_pred             EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc--hHHhhhceeEEeeeccc----------
Confidence            9999876655533  223446789999998888899999999998777653  11111111111110000          


Q ss_pred             CCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHH
Q 006909          504 GIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRL  583 (626)
Q Consensus       504 ~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  583 (626)
                       ++.                           ...-+|.+++|+|--..+++++. ||.|-+||+...           +.
T Consensus       227 -~~~---------------------------~~~yPVNai~Fhp~~~tfaTgGs-DG~V~~Wd~~~r-----------Kr  266 (323)
T KOG1036|consen  227 -KDT---------------------------EIIYPVNAIAFHPIHGTFATGGS-DGIVNIWDLFNR-----------KR  266 (323)
T ss_pred             -CCc---------------------------eEEEEeceeEeccccceEEecCC-CceEEEccCcch-----------hh
Confidence             110                           01125788999998888999888 899999999887           44


Q ss_pred             HhhhccCCcccc--ccccccceEEEEec
Q 006909          584 QQQCLNNVDDVR--AISATWGLVIVTAG  609 (626)
Q Consensus       584 ~~~~~~~~~~~~--~~s~~dg~~ivt~g  609 (626)
                      ...+++....+.  +++. ||..||.|+
T Consensus       267 l~q~~~~~~SI~slsfs~-dG~~LAia~  293 (323)
T KOG1036|consen  267 LKQLAKYETSISSLSFSM-DGSLLAIAS  293 (323)
T ss_pred             hhhccCCCCceEEEEecc-CCCeEEEEe
Confidence            444555544343  4455 899999887

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=5.1e-23  Score=207.76  Aligned_cols=237  Identities=24%  Similarity=0.413  Sum_probs=205.4

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .+.+.+|...|.|+..-..++.+++|+.|..+-+|.+..                                         
T Consensus        21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-----------------------------------------   59 (825)
T KOG0267|consen   21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-----------------------------------------   59 (825)
T ss_pred             chhhhhhhhhhceeeeeccceeeccCCCceeeccccccC-----------------------------------------
Confidence            356678999999999988899999999999999998875                                         


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                          ..++..+.+|..+|.++.|+++. +|++|+.+|+|++||++.++.++++ +|...+..+.|+| -+.++++|+.|+
T Consensus        60 ----p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdt  134 (825)
T KOG0267|consen   60 ----PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDT  134 (825)
T ss_pred             ----CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccc
Confidence                23355688999999999999876 8889999999999999999888776 6999999999999 999999999999


Q ss_pred             cEEEEeCCC-CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          332 KVRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       332 ~v~iwd~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      .+++||.+. |....+.+|...+..+.|+|+|++++.|+.|.++++||+..++...+       ...|...+..+.|+|.
T Consensus       135 d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e-------f~~~e~~v~sle~hp~  207 (825)
T KOG0267|consen  135 DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE-------FKSHEGKVQSLEFHPL  207 (825)
T ss_pred             cceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc-------cccccccccccccCch
Confidence            999999994 55556677888999999999999999999999999999987775322       3445688999999998


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      . .+++.|+.|+++++||+.+....-.+......|.+..|+|+++.+++|....
T Consensus       208 e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  208 E-VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             h-hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            6 7889999999999999987766666666788999999999999999886543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=4.7e-22  Score=192.61  Aligned_cols=238  Identities=22%  Similarity=0.368  Sum_probs=201.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      -..-|.++.+.|||+.|++|+.-.++.|||+......                                           
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr-------------------------------------------  500 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR-------------------------------------------  500 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcc-------------------------------------------
Confidence            3567899999999999999999999999999863211                                           


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      ....+..-.-...+++.+||. ..++|..||.|.|||+.+...++.|. |.+.+.||.+++ +|..|-+|+.|++||.||
T Consensus       501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWD  579 (705)
T KOG0639|consen  501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWD  579 (705)
T ss_pred             hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehh
Confidence            112233334567788889987 77899999999999999999999995 999999999999 999999999999999999


Q ss_pred             CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       338 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      +++++..........|.++.++|++.++++|-.++.+.+......+.  .++..      |..-|.++.|.+.| +++++
T Consensus       580 lregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k--yqlhl------heScVLSlKFa~cG-kwfvS  650 (705)
T KOG0639|consen  580 LREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK--YQLHL------HESCVLSLKFAYCG-KWFVS  650 (705)
T ss_pred             hhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc--eeecc------cccEEEEEEecccC-ceeee
Confidence            99999888888889999999999999999999999998887765432  22222      34789999999998 89999


Q ss_pred             EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      .+.|+-+..|.+--....|... ....|.++.+|.|.+||+||+.|....||.+
T Consensus       651 tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  651 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999999999977666666654 5678999999999999999999988888865

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.9e-21  Score=186.42  Aligned_cols=252  Identities=21%  Similarity=0.314  Sum_probs=186.1

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceE
Q 006909          193 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL  272 (626)
Q Consensus       193 g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  272 (626)
                      |+|+|.|+.|..|.|||+.-.....-.+               .++...+.         ......+.-..-.+|+..|.
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~---------------~LGs~~sk---------~~~k~~k~~~~~~gHTdavl  247 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCV---------------TLGSKASK---------KKKKKGKRSNSASGHTDAVL  247 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccce---------------eechhhhh---------hhhhhcccccccccchHHHH
Confidence            5799999999999999986432211110               11100000         00000111223457999999


Q ss_pred             EEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEEecc
Q 006909          273 DLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWAD  348 (626)
Q Consensus       273 ~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~  348 (626)
                      +++|+..  +.|+|||.|.+|++||+.++++..++. |...|.++.|+|..+.+|++|+.|++|.+.|.+. ...-....
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk  327 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK  327 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence            9999865  589999999999999999999999997 8889999999998899999999999999999985 22223344


Q ss_pred             CCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909          349 VRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  427 (626)
Q Consensus       349 ~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw  427 (626)
                      ..+.|-.+.|.|.. ..+++++.||+++-+|++....+...+..|      ...|.++++++.-+.++++++.|+.|++|
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH------d~~ISgl~~n~~~p~~l~t~s~d~~Vklw  401 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH------DDEISGLSVNIQTPGLLSTASTDKVVKLW  401 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec------cCCcceEEecCCCCcceeeccccceEEEE
Confidence            56778899999954 577888999999999999887555555544      48999999999888899999999999999


Q ss_pred             eCCc--ceeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCC
Q 006909          428 DGVD--VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       428 d~~~--~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~  474 (626)
                      +...  ........-..+...++++.|+-. +++.|+..+.++|||+.+.
T Consensus       402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            9652  221111111223456677777654 4667777788999999875

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.6e-21  Score=186.59  Aligned_cols=246  Identities=17%  Similarity=0.195  Sum_probs=190.5

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      -.++|.|++-+|+|.+|+.|+..|.|++|.+.+|                                             .
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG---------------------------------------------~  114 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSG---------------------------------------------I  114 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccc---------------------------------------------c
Confidence            4678999999999999999989999999999984                                             4


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC---------CCeeeEeec-CCCCeEEEEEeeC-CCCEEEEE
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------CNQCLNVFD-HHNYVTCVQFNPI-DDNYFISG  327 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~---------~~~~~~~~~-~~~~v~~~~~~p~-~~~~l~s~  327 (626)
                      .+..+.+|-..|+|+.|+.|+ +|+|||.||.|.+|++-         +-.++..|. |.-+|+.+...+. ...+++++
T Consensus       115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta  194 (476)
T KOG0646|consen  115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA  194 (476)
T ss_pred             HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence            466778999999999999988 99999999999999762         234555664 8889999998762 34689999


Q ss_pred             eCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee----------EEeecccccc
Q 006909          328 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE----------KVDFHDRKKT  397 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~----------~~~~~~~~~~  397 (626)
                      |.|.++++||+..+.++........+++++.+|.++.+++|+.+|.|.+.++.+......          ..... ...+
T Consensus       195 S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~-~~~G  273 (476)
T KOG0646|consen  195 SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN-VLVG  273 (476)
T ss_pred             cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee-eecc
Confidence            999999999999999999889999999999999999999999999999988754331100          00001 1223


Q ss_pred             CCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECC
Q 006909          398 SGN--KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYD  472 (626)
Q Consensus       398 ~~~--~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~  472 (626)
                      |.+  .|+|++.+-|| .+|++|+.||+|+|||+......-......++|+.+.+.|-.+-++.+ .....+-.|++.
T Consensus       274 h~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  274 HENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK  350 (476)
T ss_pred             ccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence            444  99999999998 799999999999999976432222222256788888886654444433 223344444444

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=3.7e-21  Score=191.89  Aligned_cols=252  Identities=20%  Similarity=0.350  Sum_probs=186.5

Q ss_pred             EEEEcCC---CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          186 TLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       186 ~l~fspd---g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      +..|++.   ...||.+.+||.|.++|....                                       .+.+++..+.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~---------------------------------------~fr~ee~~lk   94 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSI---------------------------------------VFRLEERQLK   94 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhh---------------------------------------hcchhhhhhc
Confidence            3667653   348999999999999998762                                       2223445567


Q ss_pred             eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe---ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                      ....|...|.++.|.|.. .|++++.|.++++||+.+..+...   ++|...|.+++|.|.+...|++|+.||.|.|||+
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            778899999999999954 899999999999999999888765   4799999999999989999999999999999999


Q ss_pred             CCCeEE----------------------------EeccCCCCeEE---EEEeeCCCEEEEEec-CCcEEEEEcCCCceee
Q 006909          339 CEKRVV----------------------------DWADVRDVISA---ICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL  386 (626)
Q Consensus       339 ~~~~~~----------------------------~~~~~~~~i~~---i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~  386 (626)
                      +-...-                            ....+...|.+   +.+..|...||+++. |+.|+|||++......
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            643200                            01122233444   556678888998877 9999999999877654


Q ss_pred             eEEeeccc-ccc---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcCCCCEEE
Q 006909          387 EKVDFHDR-KKT---SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHII  458 (626)
Q Consensus       387 ~~~~~~~~-~~~---~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~g~~l~  458 (626)
                      ..-..... ...   ....++++.....| .+|++.+.|+.|+.|++..    +...+.+......-..-..+|++.+|+
T Consensus       255 r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~  333 (720)
T KOG0321|consen  255 RQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL  333 (720)
T ss_pred             ccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence            42211110 111   13467788888887 5677777799999999763    333444432333333445689999999


Q ss_pred             EEeCCccEEEEECCCCCCC
Q 006909          459 SIGDDCRVYVWNYDELCFP  477 (626)
Q Consensus       459 s~s~dg~I~iwd~~~~~~~  477 (626)
                      +|+.|...++|.+.+...+
T Consensus       334 SgSsd~~ayiw~vs~~e~~  352 (720)
T KOG0321|consen  334 SGSSDEQAYIWVVSSPEAP  352 (720)
T ss_pred             ccCCCcceeeeeecCccCC
Confidence            9999999999999987444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.9e-20  Score=186.11  Aligned_cols=380  Identities=16%  Similarity=0.209  Sum_probs=255.0

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      +.....+....++|++|+.+|.+..++.|++||.+..++...+...                                  
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~----------------------------------  145 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT----------------------------------  145 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE----------------------------------
Confidence            3344455667899999999999999999999997777777653221                                  


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-----c----CCCCeEEEEEeeCC
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-----D----HHNYVTCVQFNPID  320 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-----~----~~~~v~~~~~~p~~  320 (626)
                               ....|...++.|.+++|+|++ .+++|+.||.|++||+.+++.+...     +    ...-|+++.|-.  
T Consensus       146 ---------~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--  214 (691)
T KOG2048|consen  146 ---------YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--  214 (691)
T ss_pred             ---------EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--
Confidence                     123344457899999999999 5999999999999999999887732     1    223577888874  


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909          321 DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  399 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  399 (626)
                      ...|++|...|+|.+||...+.+.. ...|...|.+++..++++++++++.|+.|..|...+....   +........|.
T Consensus       215 d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---wv~~~~r~~h~  291 (691)
T KOG2048|consen  215 DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---WVINSRRDLHA  291 (691)
T ss_pred             cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc---eeeeccccCCc
Confidence            6689999999999999999888765 5678899999999999999999999999999998877553   33334455667


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeE-EEEEcCCCCEEEEEeCCccEEEEECCCCCC--
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNYDELCF--  476 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~--  476 (626)
                      ..|.+++..++   .+++|+.|..+.+-..+.............+-. .+...|..+ |+.--.+..+.+|.+.+...  
T Consensus       292 hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~-L~~~w~~h~v~lwrlGS~~~~g  367 (691)
T KOG2048|consen  292 HDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENR-LLVLWKAHGVDLWRLGSVILQG  367 (691)
T ss_pred             ccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccce-EEEEeccccccceeccCccccc
Confidence            89999999886   799999999998876543111110000000001 112233333 33333356677777765411  


Q ss_pred             --------CCCCccCCccceeeeccCCcEEEEec---------CC--------------------------CCccccccc
Q 006909          477 --------PSSKQKNSVRSCEHFFSEGVSVAVQW---------PG--------------------------IGTEQKSLC  513 (626)
Q Consensus       477 --------~~~~~~~~~~~~~~~~~~g~~~av~~---------s~--------------------------~~~~l~~~~  513 (626)
                              .........++|.+.+|+|..+|+..         .|                          ++..++.++
T Consensus       368 ~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s  447 (691)
T KOG2048|consen  368 EYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS  447 (691)
T ss_pred             ccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe
Confidence                    12223445678889999999988875         11                          111111111


Q ss_pred             CCCccccCccccccC--CC------Cccc-CCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHH
Q 006909          514 SSSLRDCSQKWDNLE--TA------PWIR-DSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ  584 (626)
Q Consensus       514 ~~~~~~~~~~w~~~~--~~------~~~~-~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  584 (626)
                      .+     ...|..++  .+      ...+ .....+..++.||||+++++++- .+.|.+|++.+..           ..
T Consensus       448 ~~-----~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t-~g~I~v~nl~~~~-----------~~  510 (691)
T KOG2048|consen  448 KN-----IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST-RGQIFVYNLETLE-----------SH  510 (691)
T ss_pred             cc-----cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec-cceEEEEEcccce-----------ee
Confidence            00     11111111  00      0111 12234778899999999999886 7999999999872           22


Q ss_pred             hhh--ccCCccccccccccceEEEEecCCceEeeeee
Q 006909          585 QQC--LNNVDDVRAISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       585 ~~~--~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                      .+.  .......+++++.+...||.+..|+.+.-|++
T Consensus       511 ~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi  547 (691)
T KOG2048|consen  511 LLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI  547 (691)
T ss_pred             cchhccCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence            222  12223334566556667888888899999887

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3e-21  Score=196.65  Aligned_cols=202  Identities=19%  Similarity=0.369  Sum_probs=162.7

Q ss_pred             ceEEEEEcC--CCeEEEEeCCCcEEEeccCC---CeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909          270 DVLDLAWSN--SNYLLSCSMDKTVRMWQVGC---NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  343 (626)
Q Consensus       270 ~V~~l~~s~--~~~l~s~s~d~~v~iwd~~~---~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~  343 (626)
                      .+.++.|+.  +++|++++..|.|.+||+..   .+.+..| .|...++++.|++...++|++||.||+|++||++....
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            456778874  35999999999999999986   4455556 49999999999999999999999999999999998664


Q ss_pred             E-EeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          344 V-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       344 ~-~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                      . .+.+....|..+.|+| .+.+|+++...|.+++||++.......+      ...|.++|.++.|+|++ .+||+|+.|
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k------~~AH~GpV~c~nwhPnr-~~lATGGRD  241 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK------LTAHNGPVLCLNWHPNR-EWLATGGRD  241 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH------hhcccCceEEEeecCCC-ceeeecCCC
Confidence            4 4556778899999999 6789999999999999999977654333      34456999999999986 799999999


Q ss_pred             CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCE-EEEEe--CCccEEEEECCCCCCCC
Q 006909          422 SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKH-IISIG--DDCRVYVWNYDELCFPS  478 (626)
Q Consensus       422 g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~-l~s~s--~dg~I~iwd~~~~~~~~  478 (626)
                      +.|+|||..... ..........+|..+.|-|..++ |++++  .|-.|+|||+.....|.
T Consensus       242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~  302 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY  302 (839)
T ss_pred             ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc
Confidence            999999976322 12222224678999999998765 55554  47899999999875554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.3e-20  Score=177.36  Aligned_cols=263  Identities=19%  Similarity=0.272  Sum_probs=197.0

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      +..+.+.+.+|.+.|+++.||.++++||+|+.|..+++|++...-.                                  
T Consensus        45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~----------------------------------   90 (609)
T KOG4227|consen   45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV----------------------------------   90 (609)
T ss_pred             cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh----------------------------------
Confidence            4456677889999999999999999999999999999999875211                                  


Q ss_pred             CCccccccCCCceeec-cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCC---CeEEEEEeeCCCCEE
Q 006909          250 PDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYF  324 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l  324 (626)
                           ....+|+.... .|.+.|.|++|...+ .+++|..+++|.+.|+++.+.+..+.|..   .|..+..+| ..+.|
T Consensus        91 -----~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~  164 (609)
T KOG4227|consen   91 -----RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTL  164 (609)
T ss_pred             -----hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceE
Confidence                 00134454443 456899999998766 89999999999999999999999998766   899999999 68999


Q ss_pred             EEEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909          325 ISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  399 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  399 (626)
                      ++.+.++.|.+||.+..+    ++..........++.|+|. ..+|++.+..+.+-+||.+.....+.+...........
T Consensus       165 ~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~  244 (609)
T KOG4227|consen  165 IVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN  244 (609)
T ss_pred             EEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccc
Confidence            999999999999998644    4445566677889999995 46778888899999999987765544222211111112


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-ceeeeeec------CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGL------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~------~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      ....++.|+|.| ..+++--....-.+||.-. ....++..      -+...+.+++|..|- .+++|+++-.|++|.+.
T Consensus       245 ~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP  322 (609)
T KOG4227|consen  245 TEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLP  322 (609)
T ss_pred             hhhhheeeCCCC-CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecC
Confidence            334678899998 5566666666666777543 23333332      123456778886544 49999999999999997


Q ss_pred             CC
Q 006909          473 EL  474 (626)
Q Consensus       473 ~~  474 (626)
                      ..
T Consensus       323 ~~  324 (609)
T KOG4227|consen  323 RA  324 (609)
T ss_pred             CC
Confidence            53

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=2e-19  Score=180.52  Aligned_cols=226  Identities=14%  Similarity=0.163  Sum_probs=163.5

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceE
Q 006909          193 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL  272 (626)
Q Consensus       193 g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  272 (626)
                      +..+++++.|+.|++||+.++                                             +.+..+.+|. .+.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~---------------------------------------------~~~~~~~~~~-~~~   34 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL---------------------------------------------EVTRTFPVGQ-RPR   34 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC---------------------------------------------ceEEEEECCC-CCC
Confidence            357889999999999999763                                             2344555443 367


Q ss_pred             EEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEE-EeCCCcEEEEeCCCCeEEEeccC
Q 006909          273 DLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGKVRIWGVCEKRVVDWADV  349 (626)
Q Consensus       273 ~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~s~dg~v~iwd~~~~~~~~~~~~  349 (626)
                      +++|+|++ .+ ++++.++.|++||..+++.+..+.....+..++|+| +++.+++ ++.++.|++||+.+.+.+.....
T Consensus        35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~  113 (300)
T TIGR03866        35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV  113 (300)
T ss_pred             ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence            89999987 44 567788999999999998877775444567889999 8876655 45689999999998877665555


Q ss_pred             CCCeEEEEEeeCCCEEEEEecCC-cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE-EEEeCCCcEEEE
Q 006909          350 RDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI-MITSEDSKLRIL  427 (626)
Q Consensus       350 ~~~i~~i~~sp~g~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l-~~~s~dg~i~iw  427 (626)
                      ...+.+++|+|+|+.++++..++ .+.+||..+...... .. .      ...+..++|+|++ +++ +++..++.|++|
T Consensus       114 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~-~~-~------~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~  184 (300)
T TIGR03866       114 GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN-VL-V------DQRPRFAEFTADG-KELWVSSEIGGTVSVI  184 (300)
T ss_pred             CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE-EE-c------CCCccEEEECCCC-CEEEEEcCCCCEEEEE
Confidence            55678899999999999988775 467789876544221 11 1      1345789999998 455 455569999999


Q ss_pred             eCCcce--eeeeecC-----CCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCC
Q 006909          428 DGVDVI--HKFKGLP-----KSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL  474 (626)
Q Consensus       428 d~~~~~--~~~~~~~-----~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~  474 (626)
                      |+.+..  ..+....     .......++|+|++++++.+ +.++.|.+||+.++
T Consensus       185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            987543  2222111     11234568899999986554 45678999999865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=2.8e-20  Score=169.18  Aligned_cols=283  Identities=14%  Similarity=0.182  Sum_probs=203.7

Q ss_pred             eccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCe------------eeEee----cCCCCeEEEEEeeCCCCEEE
Q 006909          264 LHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ------------CLNVF----DHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~------------~~~~~----~~~~~v~~~~~~p~~~~~l~  325 (626)
                      ...|.+.|+.+...+. | ++++|+.||.|.+||++...            |+...    .|.-.|..+.|-|.+..+|.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            3468899999999874 4 89999999999999996542            11111    26678999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          326 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      +++.|.++++||..+-+....+...+.|.+-+++|-   .-++++|..+-.|++.|+..+...-.       ..+|...|
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~-------LsGHr~~v  191 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT-------LSGHRDGV  191 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee-------eccccCce
Confidence            999999999999999998888888899999999883   45788899999999999998875321       34456899


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEeCCcce---eee------------eecCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRILDGVDVI---HKF------------KGLPKSGSQMSASFTTTGKHIISIGDDCRVY  467 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~---~~~------------~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~  467 (626)
                      .++.|+|.....|++|+.||.|++||++...   ..+            ....|.+.+.+++|+.++.++++++.|..++
T Consensus       192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r  271 (397)
T KOG4283|consen  192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR  271 (397)
T ss_pred             EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence            9999999987789999999999999976431   111            1234778899999999999999999999999


Q ss_pred             EEECCCCCCCCCCccC---Cccceeeec----cCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCccc
Q 006909          468 VWNYDELCFPSSKQKN---SVRSCEHFF----SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFS  540 (626)
Q Consensus       468 iwd~~~~~~~~~~~~~---~~~~~~~~~----~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  540 (626)
                      +|+..++.........   ......+++    ..+..+.+... ++..+..+..++.   ++.         ...+...+
T Consensus       272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~-~~lall~~~sgs~---ir~---------l~~h~k~i  338 (397)
T KOG4283|consen  272 VWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND-GSLALLNLLEGSF---VRR---------LSTHLKRI  338 (397)
T ss_pred             EeecccCcccccccccccccccccceEEEeecccceEEEEecC-CeEEEEEccCceE---EEe---------eeccccee
Confidence            9999987332221111   000111111    12223222222 3333444333322   222         22344456


Q ss_pred             CCccccCCCCcccccCCCCCCCCCCCc
Q 006909          541 LGSWFSNDGPCRGSATWPAEKLPLWDV  567 (626)
Q Consensus       541 ~~~~~s~dg~~l~s~~~~d~~i~vwd~  567 (626)
                      ...+|-|+-+...++.. ++.|..|-.
T Consensus       339 ~c~~~~~~fq~~~tg~~-d~ni~~w~p  364 (397)
T KOG4283|consen  339 NCAAYRPDFEQCFTGDM-NGNIYMWSP  364 (397)
T ss_pred             eEEeecCchhhhhcccc-CCccccccc
Confidence            66677777777777777 788999965

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=2.3e-20  Score=179.52  Aligned_cols=289  Identities=15%  Similarity=0.194  Sum_probs=212.1

Q ss_pred             cccccccccccccCcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909          169 TALYTSQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  246 (626)
Q Consensus       169 ~~~~~~~~l~~H~~~V~~l~fspdg~--~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (626)
                      ......++++-|.+.|++++|+|...  ++|+|..-|.|-+||+.+...                               
T Consensus       174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------------------------  222 (498)
T KOG4328|consen  174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------------------------  222 (498)
T ss_pred             ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------------------------
Confidence            44555667788999999999999654  889999999999999953111                               


Q ss_pred             eecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCC
Q 006909          247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD  321 (626)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~  321 (626)
                                ....+..+..|..+|.+|.|+|.+  .+++.|.||+|++-|++++..-..+.   .......+.|+. +.
T Consensus       223 ----------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~  291 (498)
T KOG4328|consen  223 ----------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ES  291 (498)
T ss_pred             ----------ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CC
Confidence                      123356677899999999999975  89999999999999998775544443   334677888887 66


Q ss_pred             CEEEEEeCCCcEEEEeCCCCe--EEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeee-EEeecccccc
Q 006909          322 NYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT  397 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~  397 (626)
                      ..++.+..=|...+||++++.  ...+.-|...|.+++++|- ..+|++++.|++.+|||++.-..... .+.    ...
T Consensus       292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls----t~~  367 (498)
T KOG4328|consen  292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS----TLP  367 (498)
T ss_pred             ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee----ccc
Confidence            666667666799999998754  3456677789999999995 56789999999999999986544332 111    223


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC----c--ceeeeeecCCC----CCeEEEEEcCCCCEEEEEeCCccEE
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV----D--VIHKFKGLPKS----GSQMSASFTTTGKHIISIGDDCRVY  467 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~----~--~~~~~~~~~~~----~~v~~~~~sp~g~~l~s~s~dg~I~  467 (626)
                      |...|.+..|||.+.. |++.+.|..|+|||..    .  +...+. |.+.    -......|.|+..+|++|-.-..|-
T Consensus       368 HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ID  445 (498)
T KOG4328|consen  368 HRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPID  445 (498)
T ss_pred             ccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCccee
Confidence            4578999999999865 9999999999999973    1  111121 1111    1345678999999999999999999


Q ss_pred             EEECCCCCCCCCC---ccCCccceeeeccCCcEEEEecCCC
Q 006909          468 VWNYDELCFPSSK---QKNSVRSCEHFFSEGVSVAVQWPGI  505 (626)
Q Consensus       468 iwd~~~~~~~~~~---~~~~~~~~~~~~~~g~~~av~~s~~  505 (626)
                      |+|-..+......   ....+.+..++||-+..++.+-+..
T Consensus       446 v~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~  486 (498)
T KOG4328|consen  446 VFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS  486 (498)
T ss_pred             EEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence            9999887532221   1224455567788766555544333

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=1.3e-20  Score=187.29  Aligned_cols=131  Identities=16%  Similarity=0.267  Sum_probs=107.9

Q ss_pred             eEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          353 ISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       353 i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      |+.+.|.| |...|++++.||.|++|.+..+...-...........|...|+++.|+|-....|++++.|.+|++||+.+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            45566777 56789999999999999998776654444444445667799999999997777999999999999999997


Q ss_pred             ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909          432 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  483 (626)
Q Consensus       432 ~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  483 (626)
                      ........+|.+.|.+++|||+|+.+++.+.||+|++|+-.....+......
T Consensus       710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g  761 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG  761 (1012)
T ss_pred             hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC
Confidence            7766666779999999999999999999999999999999887655554444

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=6.4e-21  Score=169.10  Aligned_cols=210  Identities=20%  Similarity=0.302  Sum_probs=169.6

Q ss_pred             cccccccccccCcEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          171 LYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      .++..+|.||.++|+.++|..  .|.+||+++.||.|.||.-++++                                  
T Consensus        46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~----------------------------------   91 (299)
T KOG1332|consen   46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR----------------------------------   91 (299)
T ss_pred             ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc----------------------------------
Confidence            356778999999999999975  79999999999999999988752                                  


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCC--eeeEe--ecCCCCeEEEEEeeCC-
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCN--QCLNV--FDHHNYVTCVQFNPID-  320 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~--~~~~~--~~~~~~v~~~~~~p~~-  320 (626)
                               .........|...|++++|.|.+   .|++++.||.|.|.+.+..  -....  +.|.-.|++++|.|.. 
T Consensus        92 ---------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   92 ---------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             ---------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence                     24466778899999999999874   7889999999999988654  22222  2488899999999831 


Q ss_pred             -C-----------CEEEEEeCCCcEEEEeCCCCe---EEEeccCCCCeEEEEEeeCC----CEEEEEecCCcEEEEEcCC
Q 006909          321 -D-----------NYFISGSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPDG----KGFIVGSITGTCHFYKASG  381 (626)
Q Consensus       321 -~-----------~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g----~~l~~g~~dg~i~i~d~~~  381 (626)
                       +           ..|++|+.|..|+||+...++   -..+.+|.+.|..++|.|.-    .+|++++.||++.||....
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence             2           569999999999999998753   22378899999999999964    5799999999999999874


Q ss_pred             CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909          382 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  428 (626)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd  428 (626)
                      ...+.+...++.    ....+..+.||..| +.|++++.|+.|.+|.
T Consensus       243 e~e~wk~tll~~----f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  243 EYEPWKKTLLEE----FPDVVWRVSWSLSG-NILAVSGGDNKVTLWK  284 (299)
T ss_pred             ccCccccccccc----CCcceEEEEEeccc-cEEEEecCCcEEEEEE
Confidence            433333222221    34789999999998 7999999999999997

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.5e-19  Score=174.66  Aligned_cols=199  Identities=24%  Similarity=0.359  Sum_probs=165.6

Q ss_pred             CccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC----
Q 006909          267 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----  340 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~----  340 (626)
                      -.++|.+++-+|+| +|+.|+..+.|++|.+.+|..+..+. |-..|+|+.|+- |+.+|++|+.||.|.+|.+..    
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence            46789999999999 45555599999999999999998884 889999999999 999999999999999997632    


Q ss_pred             ------CeEEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          341 ------KRVVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       341 ------~~~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                            .....+..|.-+|+.+...+.  ..++++++.|.++++||+..+.+... +.+.       ..+.+++..|.+ 
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt-i~fp-------~si~av~lDpae-  229 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT-ITFP-------SSIKAVALDPAE-  229 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE-EecC-------CcceeEEEcccc-
Confidence                  234567889999999988775  35899999999999999999876543 2222       689999999997 


Q ss_pred             cEEEEEeCCCcEEEEeCCc------------------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          413 QRIMITSEDSKLRILDGVD------------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ..+++|+.+|.|.+.++..                  ....+.++.....|++++++-||..|++|+.||.|.|||+.+.
T Consensus       230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence            7999999999999987431                  1233344434459999999999999999999999999999886


Q ss_pred             C
Q 006909          475 C  475 (626)
Q Consensus       475 ~  475 (626)
                      .
T Consensus       310 Q  310 (476)
T KOG0646|consen  310 Q  310 (476)
T ss_pred             H
Confidence            3

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=3.6e-20  Score=178.23  Aligned_cols=290  Identities=14%  Similarity=0.149  Sum_probs=207.1

Q ss_pred             CceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCCee----eEee-cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          260 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC----LNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~----~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                      ......-|.+.|++++|+|..   .+++|+.-|+|-+||+.+.+.    +..+ .|..+|.++.|+|.+...+++.|.||
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            345556789999999999853   788999999999999953322    2333 48999999999998899999999999


Q ss_pred             cEEEEeCCCCeEEE---eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          332 KVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       332 ~v~iwd~~~~~~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      +|++-|+.+.....   .......+..+.|+.+...++.+..=|...+||++.....+..+.++.      ..|++++++
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~------kKI~sv~~N  331 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK------KKITSVALN  331 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh------cccceeecC
Confidence            99999998765333   333456678888988888888888888999999999887766665554      589999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCccee----eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC---CCCCCCC--
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD---ELCFPSS--  479 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~---~~~~~~~--  479 (626)
                      |..+.+|++++.|++.+|||+++...    .+....|...|.++.|||.+-.|++.+.|..|+|||..   ....+..  
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I  411 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI  411 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence            99889999999999999999874332    34556789999999999998889999999999999984   1111111  


Q ss_pred             CccCCc-----cceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCccc-CCccccCCCCccc
Q 006909          480 KQKNSV-----RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFS-LGSWFSNDGPCRG  553 (626)
Q Consensus       480 ~~~~~~-----~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~  553 (626)
                      .|....     .--..|.|+..+++++-.+....++....+.....+           ..+....| .-..|+|-+..++
T Consensus       412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el-----------~~P~~~tI~~vn~~HP~~~~~~  480 (498)
T KOG4328|consen  412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL-----------HDPESSTIPSVNEFHPMRDTLA  480 (498)
T ss_pred             eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec-----------cCccccccccceeeccccccee
Confidence            111100     111245666666666655555444433332211100           11111112 2236888887666


Q ss_pred             ccCCCCCCCCCCC
Q 006909          554 SATWPAEKLPLWD  566 (626)
Q Consensus       554 s~~~~d~~i~vwd  566 (626)
                      +++..-|+|.+|-
T Consensus       481 aG~~s~Gki~vft  493 (498)
T KOG4328|consen  481 AGGNSSGKIYVFT  493 (498)
T ss_pred             ccCCccceEEEEe
Confidence            6665568888873

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=2.5e-19  Score=164.78  Aligned_cols=202  Identities=24%  Similarity=0.354  Sum_probs=164.9

Q ss_pred             ccccccccCcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          174 SQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~--~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      ...|..|.+.|+++.|.++-.  .|++|+.||.|.+|++..                                       
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---------------------------------------  116 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---------------------------------------  116 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------------------------------------
Confidence            445668999999999999876  999999999999999986                                       


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                            ...+..+.+|.+.|+.++.+|.+ +-++.+.|+.++.||+-.|+.-.........+.+.|+| .|.+|+.++.+
T Consensus       117 ------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~  189 (362)
T KOG0294|consen  117 ------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN  189 (362)
T ss_pred             ------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc
Confidence                  45688999999999999999999 55688999999999999888777776666666799999 99988888764


Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE--c
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF--S  408 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--s  408 (626)
                       .|-+|.+....+.........+.++.|. ++..+++|..++.|.+||........ .      ..+|..+|.++.+  .
T Consensus       190 -~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~-~------~~AH~~RVK~i~~~~~  260 (362)
T KOG0294|consen  190 -KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLT-E------FLAHENRVKDIASYTN  260 (362)
T ss_pred             -EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccce-e------eecchhheeeeEEEec
Confidence             5899999887766655555667777664 56689999999999999998743322 2      3345588999884  3


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCc
Q 006909          409 RDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      |++ .+|++++.||.|+|||+..
T Consensus       261 ~~~-~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  261 PEH-EYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             CCc-eEEEEeccCceEEEEEccc
Confidence            444 7999999999999999763

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=1.9e-19  Score=179.85  Aligned_cols=250  Identities=19%  Similarity=0.261  Sum_probs=181.0

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      ...+|.++|..++|-|....|++++.|.+++.||+......                                       
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~---------------------------------------  135 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV---------------------------------------  135 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee---------------------------------------
Confidence            34589999999999995569999999999999999874321                                       


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCee--------------------eEe--------e
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC--------------------LNV--------F  305 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~--------------------~~~--------~  305 (626)
                          -...+.||...|.+++|++.+  .|++|+.||.|.|||++....                    ...        .
T Consensus       136 ----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  136 ----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence                122477999999999999876  899999999999999864320                    000        0


Q ss_pred             cCCCC----eEEEEEeeCCCCEEEEEeC-CCcEEEEeCCCCeEEE---------eccC---CCCeEEEEEeeCCCEEEEE
Q 006909          306 DHHNY----VTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVD---------WADV---RDVISAICYIPDGKGFIVG  368 (626)
Q Consensus       306 ~~~~~----v~~~~~~p~~~~~l~s~s~-dg~v~iwd~~~~~~~~---------~~~~---~~~i~~i~~sp~g~~l~~g  368 (626)
                      .+...    |+.+.| . |...||+++. |+.|+|||++......         +..+   ...+.++.....|.+|.+.
T Consensus       212 A~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As  289 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS  289 (720)
T ss_pred             cccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence            12333    444555 4 8899999988 9999999998754321         1122   3457788888889999999


Q ss_pred             ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeee-eecCCCCCeEE
Q 006909          369 SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMS  447 (626)
Q Consensus       369 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~  447 (626)
                      +.|+.|++|++.+......... .+ .... ..-..-..+|++ .++++|+.|...++|.+..+.... ...+|...|++
T Consensus       290 CtD~sIy~ynm~s~s~sP~~~~-sg-~~~~-sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~  365 (720)
T KOG0321|consen  290 CTDNSIYFYNMRSLSISPVAEF-SG-KLNS-SFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTT  365 (720)
T ss_pred             ecCCcEEEEeccccCcCchhhc-cC-cccc-eeeeeeecCCCC-ceEeccCCCcceeeeeecCccCChhhhhCcceEEEE
Confidence            9999999999987654322111 11 0001 111223468887 799999999999999987544322 22448889999


Q ss_pred             EEEcCCC-CEEEEEeCCccEEEEECCCC
Q 006909          448 ASFTTTG-KHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       448 ~~~sp~g-~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++|.|.. .-++++++|..++||++.++
T Consensus       366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  366 VRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             EeeccccCCCceeeccCcceEEEeccCc
Confidence            9997743 34677799999999999776

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=1.8e-19  Score=166.51  Aligned_cols=290  Identities=18%  Similarity=0.272  Sum_probs=206.0

Q ss_pred             cccccccCcEEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          175 QEIQAHKGCIWTLKFSP-----DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fsp-----dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      +....|+.+|..++|.+     +-+.+||+|.+ .+.||........                                 
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i---------------------------------   77 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI---------------------------------   77 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce---------------------------------
Confidence            34568999999999985     33478887764 5889887642100                                 


Q ss_pred             CCccccccCCCceeec--cCccceEEEEEcC---C-C-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCC
Q 006909          250 PDEVFQIEESPLQELH--GHKGDVLDLAWSN---S-N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDD  321 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~--~h~~~V~~l~~s~---~-~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~  321 (626)
                               ..++...  .|......++|+-   + + ++++++.-|.|+|.|+.++++...+ +|...|+.+.++|...
T Consensus        78 ---------r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~  148 (385)
T KOG1034|consen   78 ---------RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP  148 (385)
T ss_pred             ---------eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCC
Confidence                     0111111  4677778888862   2 2 8999999999999999999998877 5999999999999888


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEE----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee---E------
Q 006909          322 NYFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE---K------  388 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~---~------  388 (626)
                      ++++++|.|.+|++|++++..++.    ..+|++.|.++.|+++|.++++++.|.++++|++...+....   .      
T Consensus       149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~  228 (385)
T KOG1034|consen  149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPN  228 (385)
T ss_pred             cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCC
Confidence            999999999999999999999886    457899999999999999999999999999999984332111   0      


Q ss_pred             ----------Eeecc--ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc----------------eeeeeecC
Q 006909          389 ----------VDFHD--RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV----------------IHKFKGLP  440 (626)
Q Consensus       389 ----------~~~~~--~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~  440 (626)
                                ..+..  ....|...|.|+.|--   .++++-+.++.|..|...+.                ...+....
T Consensus       229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~  305 (385)
T KOG1034|consen  229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM  305 (385)
T ss_pred             CccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence                      11111  1233455666666664   48999999999999975311                11122211


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCC
Q 006909          441 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS  516 (626)
Q Consensus       441 ~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~  516 (626)
                      ...+....+|.|-++.||.|...|.|++||++....+...      +..+--....+...+++.||..|...+.+.
T Consensus       306 c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t------tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~  375 (385)
T KOG1034|consen  306 CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT------TLTHSKSGSTVRQTSFSRDGSILVLVCDDG  375 (385)
T ss_pred             cceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc------eEEeccccceeeeeeecccCcEEEEEeCCC
Confidence            2223445667788999999999999999999986332111      000001123455677788888777766654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=7e-21  Score=192.44  Aligned_cols=226  Identities=18%  Similarity=0.281  Sum_probs=181.5

Q ss_pred             eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                      +..|...|.++..-..+ .+++|+.|..+.+|.+....++..+ .|..+|.++.|++ ...+|+.|+.+|+|++||+...
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhh
Confidence            44688888888875444 7889999999999999877777665 6999999999999 9999999999999999999887


Q ss_pred             eEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909          342 RVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  420 (626)
Q Consensus       342 ~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~  420 (626)
                      +.+ .+.+|...+.++.|+|-+.+++.|+.|+.+.+||.+...+...       ..+|...+..+.|+|+| .+++.++.
T Consensus       103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~-------~~s~~~vv~~l~lsP~G-r~v~~g~e  174 (825)
T KOG0267|consen  103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT-------YKSHTRVVDVLRLSPDG-RWVASGGE  174 (825)
T ss_pred             hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee-------ecCCcceeEEEeecCCC-ceeeccCC
Confidence            654 5789999999999999999999999999999999986555332       22355789999999998 89999999


Q ss_pred             CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc-cCCccceeeeccCCcEE
Q 006909          421 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSV  498 (626)
Q Consensus       421 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~g~~~  498 (626)
                      |.+++|||.......-....|.+.+..+.|+|..-++++||.|++|++||+++........ ....+.+..|.|++..+
T Consensus       175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~  253 (825)
T KOG0267|consen  175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV  253 (825)
T ss_pred             cceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceee
Confidence            9999999986544333333488999999999999999999999999999999753322221 12233445666665543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=4.6e-19  Score=162.87  Aligned_cols=293  Identities=12%  Similarity=0.151  Sum_probs=197.5

Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc
Q 006909          271 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  348 (626)
Q Consensus       271 V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  348 (626)
                      ..|+.|++.| +|++|+.||.|.|||+.+...-+.+. |..+|++++|++ +|+.|+++|.|..|.+||+..+.+.....
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            7899999988 99999999999999999988877775 999999999999 99999999999999999999999999899


Q ss_pred             CCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909          349 VRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  427 (626)
Q Consensus       349 ~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw  427 (626)
                      ...+|..+.|+|... ..++.-.+..-.+.++.......-  .... .........+..|.+.| +++++|...|.+.++
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L--p~d~-d~dln~sas~~~fdr~g-~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL--PKDD-DGDLNSSASHGVFDRRG-KYIITGTSKGKLLVY  180 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeec--cCCC-ccccccccccccccCCC-CEEEEecCcceEEEE
Confidence            999999999999544 333343444455666554322111  1110 00011122334688887 799999999999999


Q ss_pred             eCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCC
Q 006909          428 DGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  505 (626)
Q Consensus       428 d~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~  505 (626)
                      |..+  ++..++.. ....|..+-|+..|++|+..+.|+.|+.|++.......+.              |..     -|.
T Consensus       181 ~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~--------------~e~-----e~~  240 (405)
T KOG1273|consen  181 DAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD--------------GEV-----EPE  240 (405)
T ss_pred             ecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc--------------CCc-----Chh
Confidence            9764  44444442 2367888999999999999999999999998853111100              000     000


Q ss_pred             CcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHh
Q 006909          506 GTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQ  585 (626)
Q Consensus       506 ~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  585 (626)
                       ..+.              +.....        .=..+.||.||.|++.++..-+.|.||....|           .+..
T Consensus       241 -~K~q--------------DvVNk~--------~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-----------sLVK  286 (405)
T KOG1273|consen  241 -HKLQ--------------DVVNKL--------QWKKCCFSGDGEYVCAGSARAHALYIWEKSIG-----------SLVK  286 (405)
T ss_pred             -HHHH--------------HHHhhh--------hhhheeecCCccEEEeccccceeEEEEecCCc-----------ceee
Confidence             0000              000000        01234577777777766654577888888777           3333


Q ss_pred             hhccCCccc---cccccccceEEEEecCCceEeeeeecCccc
Q 006909          586 QCLNNVDDV---RAISATWGLVIVTAGCDGMIKTFHNYGLPI  624 (626)
Q Consensus       586 ~~~~~~~~~---~~~s~~dg~~ivt~g~Dg~Irvw~~~g~p~  624 (626)
                      ..+...|..   .++.+ -...|++- ..|+|++|..-..|=
T Consensus       287 ILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~~en  326 (405)
T KOG1273|consen  287 ILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQVEN  326 (405)
T ss_pred             eecCCchhheeeccccc-ceeeeeec-cCCceEEEEeecccc
Confidence            333333221   12223 23345555 679999999877663

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=2e-19  Score=172.72  Aligned_cols=205  Identities=21%  Similarity=0.276  Sum_probs=169.1

Q ss_pred             ccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          178 QAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      .+|+++|.+|+|+..-+ .||+||.|.+|++||+.+                                            
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~--------------------------------------------  275 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT--------------------------------------------  275 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCC--------------------------------------------
Confidence            48999999999987654 899999999999999998                                            


Q ss_pred             cCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCC-CeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                       ++|..++..|...|.++.|+|..  .|++|+.|++|.+.|.+. ...-..+...+.|-.++|.|...+.++++..||+|
T Consensus       276 -g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v  354 (463)
T KOG0270|consen  276 -GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTV  354 (463)
T ss_pred             -CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceE
Confidence             45677788899999999999875  899999999999999984 33334556788999999999889999999999999


Q ss_pred             EEEeCCCC--eEEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          334 RIWGVCEK--RVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       334 ~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      +-+|+|..  .+.....|.+.|.++++++.- ..+++++.++.+++|++..............     -+...|+++.|+
T Consensus       355 ~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~-----~~rl~c~~~~~~  429 (463)
T KOG0270|consen  355 YYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK-----LGRLHCFALDPD  429 (463)
T ss_pred             EeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc-----ccceeecccCCC
Confidence            99999874  455688999999999999854 4688899999999999986654322111111     145778888998


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcc
Q 006909          411 ESQRIMITSEDSKLRILDGVDV  432 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~  432 (626)
                      -..+++.|+..+.++|||+.+.
T Consensus       430 ~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  430 VAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             cceEEEecCccceEEEeecccC
Confidence            7778999999999999997643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=1.1e-18  Score=165.05  Aligned_cols=234  Identities=22%  Similarity=0.349  Sum_probs=182.1

Q ss_pred             cccccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          177 IQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       177 l~~H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      ..||+++|..++|+|- ...||+||+|.+|.||++-.....                                      .
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------------------------~  118 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------------------------R  118 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------------------------c
Confidence            4699999999999994 458999999999999998763221                                      0


Q ss_pred             ccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                      --..|+..|.||...|--++|+|.  +.|++++.|.+|.+||+.+|..+.++.|.+.|.++.|+. +|.+|++++.|..|
T Consensus       119 ~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkv  197 (472)
T KOG0303|consen  119 DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKV  197 (472)
T ss_pred             CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeeccccee
Confidence            114678999999999999999996  589999999999999999999999999999999999999 99999999999999


Q ss_pred             EEEeCCCCeEEEec-cCCC-CeEEEEEeeCCCEEEEEe---cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          334 RIWGVCEKRVVDWA-DVRD-VISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       334 ~iwd~~~~~~~~~~-~~~~-~i~~i~~sp~g~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      ||||.++++++... .|.+ ....+.|-.+|..+-+|.   .+..+-+||..+-..+.....+..     .+.|.---|.
T Consensus       198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-----SnGvl~PFyD  272 (472)
T KOG0303|consen  198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-----SNGVLLPFYD  272 (472)
T ss_pred             EEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-----CCceEEeeec
Confidence            99999999988754 4433 345566778888555553   367899999887665544333333     2566666678


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCC
Q 006909          409 RDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTG  454 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g  454 (626)
                      +|.+-..++|-.|+.|+.|.+.+.   ++-+.......+...+.|-|..
T Consensus       273 ~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  273 PDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             CCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence            887556667888999999997632   3333333345667777777654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=6.3e-20  Score=195.33  Aligned_cols=248  Identities=16%  Similarity=0.237  Sum_probs=197.6

Q ss_pred             CcEEEEEEcCCCCE----EEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          182 GCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       182 ~~V~~l~fspdg~~----Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      ..-+.++|.+.|..    ||.|.+||.|.+||......                                       ..+
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------------------------~~~  105 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------------------------NAS  105 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------------------------Ccc
Confidence            34677889887765    99999999999999875100                                       011


Q ss_pred             CCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                      ...+.++..|++.|..+.|++..  .|++|+.||.|.|||+.+-+.-...   ...+.|.+++|+....++|++++.+|.
T Consensus       106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~  185 (1049)
T KOG0307|consen  106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR  185 (1049)
T ss_pred             hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence            34467778899999999999853  8999999999999999875444443   256789999999867788999999999


Q ss_pred             EEEEeCCCCeEE-EeccCC--CCeEEEEEeeCC-CEEEEEecCC---cEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          333 VRIWGVCEKRVV-DWADVR--DVISAICYIPDG-KGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       333 v~iwd~~~~~~~-~~~~~~--~~i~~i~~sp~g-~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      +.|||++.++.+ .+..+.  ..+..+.|+|++ ..+++++.|.   .|.+||++....+......      |...|.++
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~------H~~Gilsl  259 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG------HQRGILSL  259 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc------cccceeee
Confidence            999999987543 443333  357899999976 4566666653   7999999877766554433      45799999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCC
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~  474 (626)
                      .|++.+..++++++.|+.|.+|+..+............++..+.|+|... .+++++-||.|-|+.+.+.
T Consensus       260 sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  260 SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             ccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            99999888999999999999999988766666666778999999999876 7788889999999999876

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=2.5e-19  Score=168.43  Aligned_cols=207  Identities=20%  Similarity=0.361  Sum_probs=161.9

Q ss_pred             cccccccccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909          169 TALYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  247 (626)
Q Consensus       169 ~~~~~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (626)
                      .......++.+|.+.=+.++|||--. .|+||.--+.|++|...++.-                                
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W--------------------------------  246 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW--------------------------------  246 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCce--------------------------------
Confidence            44556667889999999999999322 588887778899999887432                                


Q ss_pred             ecCCccccccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCC---eeeEeecCCCCeEEEEEeeCCCC
Q 006909          248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDN  322 (626)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~p~~~~  322 (626)
                             ...   ...+.+|+..|-.|+|||.  +.|++||.||+|+|||++.+   .++.+-.|...|+.|.|+. ...
T Consensus       247 -------~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~  315 (440)
T KOG0302|consen  247 -------KVD---QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REP  315 (440)
T ss_pred             -------eec---CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-Ccc
Confidence                   222   2345679999999999985  59999999999999999988   5555556999999999998 666


Q ss_pred             EEEEEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCce-------------
Q 006909          323 YFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDL-------------  384 (626)
Q Consensus       323 ~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~-------------  384 (626)
                      +|++|+.||+++|||++.-+    +..+..|+.+|++|.|+|. ...|++++.|.+|.+||+....-             
T Consensus       316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~  395 (440)
T KOG0302|consen  316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQ  395 (440)
T ss_pred             eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchh
Confidence            99999999999999998633    3467889999999999994 56788899999999999864322             


Q ss_pred             --eeeEEeec-cccccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909          385 --KLEKVDFH-DRKKTSGNKITGIQFSRDESQRIMITSEDSK  423 (626)
Q Consensus       385 --~~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~  423 (626)
                        +...+-.| +     ...+..+.|+++-+.++++.+.||-
T Consensus       396 dlPpQLLFVHqG-----Qke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  396 DLPPQLLFVHQG-----QKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             cCCceeEEEecc-----hhHhhhheeccCCCCeEEEecccce
Confidence              11111111 2     2567788999987778998888873

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=1.7e-18  Score=171.71  Aligned_cols=293  Identities=18%  Similarity=0.170  Sum_probs=207.0

Q ss_pred             cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      ...+...+.||++.|.+|...|.| .|++|+.||+|+||.+.+|.|++++...+.|.|++|+|.....++.+..+..+.|
T Consensus       389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI  468 (733)
T ss_pred             cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence            344456778999999999999988 9999999999999999999999999999999999999943334444444444544


Q ss_pred             EeCCCC--------------------------------------eEEEeccCCCCeEEEEEeeCCCEEEEEecC---CcE
Q 006909          336 WGVCEK--------------------------------------RVVDWADVRDVISAICYIPDGKGFIVGSIT---GTC  374 (626)
Q Consensus       336 wd~~~~--------------------------------------~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d---g~i  374 (626)
                      .+..-|                                      .+.....|...|..+.|+..|.||++...+   ..|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            443211                                      012345567789999999999999997664   478


Q ss_pred             EEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC
Q 006909          375 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  454 (626)
Q Consensus       375 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g  454 (626)
                      .|+++.....+.   .+    ....+.|.++.|+|..+ +|++++ ...|+|||+.....+-+.......|..++.+|.|
T Consensus       549 liHQLSK~~sQ~---PF----~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  549 LIHQLSKRKSQS---PF----RKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             EEEecccccccC---ch----hhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence            888887654431   11    12237899999999864 455444 4689999987654444445567789999999999


Q ss_pred             CEEEEEeCCccEEEEECCCCCCCC--CCccCCccceeeeccCCcEEEEecCCCCcccccc---cCCCccccCccccccCC
Q 006909          455 KHIISIGDDCRVYVWNYDELCFPS--SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL---CSSSLRDCSQKWDNLET  529 (626)
Q Consensus       455 ~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~---~~~~~~~~~~~w~~~~~  529 (626)
                      ..|+.++.|+.+..+|++-...+.  ..+.......++||+.-..+|.+ ++||..+..-   -++.+...     .+-.
T Consensus       620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~-sdDgtv~Vfhg~VY~Dl~qnp-----liVP  693 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG-SDDGTVIVFHGMVYNDLLQNP-----LIVP  693 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee-cCCCcEEEEeeeeehhhhcCC-----ceEe
Confidence            999999999999999998663332  22333445556888877777766 5555544321   12211110     0112


Q ss_pred             CCcccCCCcc----cCCccccCCCCcccccCCCCCCCCCC
Q 006909          530 APWIRDSERF----SLGSWFSNDGPCRGSATWPAEKLPLW  565 (626)
Q Consensus       530 ~~~~~~~~~~----~~~~~~s~dg~~l~s~~~~d~~i~vw  565 (626)
                      ...+++|...    |....|+|.--++.+++. ++.|++|
T Consensus       694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA-d~tirlf  732 (733)
T KOG0650|consen  694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA-DGTIRLF  732 (733)
T ss_pred             eeeccCceeecccceEeecccCCCceEEecCC-CceEEee
Confidence            2234455443    777889999999999988 7899988

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=4.6e-18  Score=155.99  Aligned_cols=269  Identities=16%  Similarity=0.216  Sum_probs=185.0

Q ss_pred             ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC----eeeEeec-CCCCeEEEEEee-CCCCEEEEEeCCCcEEEEe
Q 006909          265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNP-IDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~p-~~~~~l~s~s~dg~v~iwd  337 (626)
                      .+|..-|.++.|.+.| ++++|+.|++|+|||....    .+....+ |.+.|..+.|.+ .-|+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            3789999999999988 9999999999999997433    3333333 999999999964 4578999999999999997


Q ss_pred             CCC----------CeEEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeecc-------ccccC
Q 006909          338 VCE----------KRVVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-------RKKTS  398 (626)
Q Consensus       338 ~~~----------~~~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~~  398 (626)
                      -..          .+...+.+.+..|+.++|.|.  |-.+++++.||.+|||+....-. +..+.+..       ....+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhhhhhhccCCcccc
Confidence            521          113346677889999999994  77899999999999999754321 11222221       12234


Q ss_pred             CCCeEEEEEcCCC--CcEEEEEeCC-----CcEEEEeCC----cceeeeeecCCCCCeEEEEEcCCC----CEEEEEeCC
Q 006909          399 GNKITGIQFSRDE--SQRIMITSED-----SKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTG----KHIISIGDD  463 (626)
Q Consensus       399 ~~~i~~l~~s~~~--~~~l~~~s~d-----g~i~iwd~~----~~~~~~~~~~~~~~v~~~~~sp~g----~~l~s~s~d  463 (626)
                      ..+..|+.|+|..  ..+|++|+.+     +.++||...    +....-....|..+|+.++|.|+-    ..||+++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            5678899998752  3478888776     588999744    333333445689999999999963    579999999


Q ss_pred             ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCc
Q 006909          464 CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGS  543 (626)
Q Consensus       464 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  543 (626)
                      | |+||++.....+...             ++..     .|+..  ..             -.++....+.+|.+.|-.+
T Consensus       249 g-v~I~~v~~~~s~i~~-------------ee~~-----~~~~~--~~-------------l~v~~vs~~~~H~~~VWrv  294 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEE-------------EEVL-----APDLM--TD-------------LPVEKVSELDDHNGEVWRV  294 (361)
T ss_pred             c-EEEEEEeeccchhhh-------------hccc-----CCCCc--cc-------------cceEEeeeccCCCCceEEE
Confidence            9 999999864221110             0100     00000  00             0011122245566667777


Q ss_pred             cccCCCCcccccCCCCCCCCCCCccc
Q 006909          544 WFSNDGPCRGSATWPAEKLPLWDVTI  569 (626)
Q Consensus       544 ~~s~dg~~l~s~~~~d~~i~vwd~~~  569 (626)
                      .|..-|..|.|.+. ||.+++|...-
T Consensus       295 ~wNmtGtiLsStGd-DG~VRLWkany  319 (361)
T KOG2445|consen  295 RWNMTGTILSSTGD-DGCVRLWKANY  319 (361)
T ss_pred             EEeeeeeEEeecCC-Cceeeehhhhh
Confidence            77777887777666 78888886553

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=5.3e-18  Score=176.45  Aligned_cols=262  Identities=14%  Similarity=0.136  Sum_probs=194.7

Q ss_pred             ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC-eeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                      ..|+...+.|+|.|+| .|++|+.||.|++|+.... ..-..+. +...|.+++.   ..++|++|+.+++|.+|....+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCC
Confidence            4788899999999998 8999999999999988665 4444444 7888888887   5569999999999999999887


Q ss_pred             eEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909          342 RVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  420 (626)
Q Consensus       342 ~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~  420 (626)
                      +.- .+....-++.+++|+.+|+++|.|+.|-.|++.+.........       .++|..+|.++.|+|.+ .+||+.+.
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~-------lrgh~apVl~l~~~p~~-~fLAvss~  158 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV-------LRGHDAPVLQLSYDPKG-NFLAVSSC  158 (933)
T ss_pred             CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee-------ecccCCceeeeeEcCCC-CEEEEEec
Confidence            655 3455667899999999999999999999999999887665332       34556899999999998 89999999


Q ss_pred             CCcEEEEeCCcceee--eee------cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC---ccCCcccee
Q 006909          421 DSKLRILDGVDVIHK--FKG------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK---QKNSVRSCE  489 (626)
Q Consensus       421 dg~i~iwd~~~~~~~--~~~------~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~~~~~  489 (626)
                      ||.|++||+.+....  +.+      ......+..++|+|+|..++..+.|+.|++|+..+.......   ......+++
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL  238 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence            999999998743322  221      112445678999999888888889999999999987433322   222335555


Q ss_pred             eeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCccc
Q 006909          490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG  553 (626)
Q Consensus       490 ~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  553 (626)
                      .|+|.|.++|.+.-.++..+|...+.               . .......|..++|-|++..+-
T Consensus       239 ~wsPnG~YiAAs~~~g~I~vWnv~t~---------------~-~~~~~~~Vc~~aw~p~~n~it  286 (933)
T KOG1274|consen  239 QWSPNGKYIAASTLDGQILVWNVDTH---------------E-RHEFKRAVCCEAWKPNANAIT  286 (933)
T ss_pred             EEcCCCcEEeeeccCCcEEEEecccc---------------h-hccccceeEEEecCCCCCeeE
Confidence            66666666666655555555543321               0 112233467777777777443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.8e-19  Score=177.88  Aligned_cols=258  Identities=19%  Similarity=0.302  Sum_probs=187.7

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      ++..|.+.|+.++|.|....|++++.||+|++|++......                                     -.
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------------------------~~  331 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------------------------AE  331 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-------------------------------------cc
Confidence            77889999999999999999999999999999999541100                                     00


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe----------eeE-eecCCCCeEEEEEeeCCCCE
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----------CLN-VFDHHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~----------~~~-~~~~~~~v~~~~~~p~~~~~  323 (626)
                      ....++.++.+|.++|.|+++.+++ .+++|+.||+|+.|++....          ... ..+|.+.|+.+++++ ....
T Consensus       332 ~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~  410 (577)
T KOG0642|consen  332 KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDR  410 (577)
T ss_pred             cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccc
Confidence            1246789999999999999999887 89999999999999664211          111 226999999999999 8888


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEeccC--CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc---ccC
Q 006909          324 FISGSIDGKVRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK---KTS  398 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~  398 (626)
                      |++++.||+|++|+........+...  .+...++++-..  .++....+.....+++...........+....   ...
T Consensus       411 Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss--~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~  488 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS--RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRR  488 (577)
T ss_pred             eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc--hhHhhhhhcccccccchhhhhhhheeeccccCCCcccc
Confidence            99999999999999887666333322  233344444332  22222223334444443333222211111111   111


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ...+..+.++|.+ .+.+++..|+.|+++|..+.........|...++++++.|+|.+|++++.|+.+++|.+...
T Consensus       489 ~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  489 YPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             cCccceEEecCCC-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            2457778888887 68999999999999998766666655668899999999999999999999999999999764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=1e-18  Score=161.55  Aligned_cols=245  Identities=21%  Similarity=0.364  Sum_probs=183.9

Q ss_pred             cccCcEEEEEEcCCC----CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          179 AHKGCIWTLKFSPDG----RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       179 ~H~~~V~~l~fspdg----~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      .|...-..++|+-|.    .+||.||.-|.|+|.|+.+                                          
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~------------------------------------------  124 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS------------------------------------------  124 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch------------------------------------------
Confidence            377777888887543    3899999999999999987                                          


Q ss_pred             cccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec----CCCCeEEEEEeeCCCCEEEEEe
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                         .+....+.+|...|+.|.++|..  +++++|.|..|++|++.+..|+..|+    |.+.|.++.|++ ++.+|++++
T Consensus       125 ---~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScG  200 (385)
T KOG1034|consen  125 ---GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCG  200 (385)
T ss_pred             ---hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccC
Confidence               44567788999999999999986  99999999999999999999999994    999999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEEE-----------------------------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEc
Q 006909          329 IDGKVRIWGVCEKRVVD-----------------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  379 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~-----------------------------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~  379 (626)
                      .|.++++|++...+...                             ..-|+..|.|+.|-  |+++++-+.++.|..|..
T Consensus       201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP  278 (385)
T ss_pred             CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence            99999999997433111                             11233444444443  578899888999999987


Q ss_pred             CCCceeee-------EEeeccccccCCCCeEEEE--EcCCCCcEEEEEeCCCcEEEEeCCcce----eeeeecCCCCCeE
Q 006909          380 SGNDLKLE-------KVDFHDRKKTSGNKITGIQ--FSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQM  446 (626)
Q Consensus       380 ~~~~~~~~-------~~~~~~~~~~~~~~i~~l~--~s~~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~  446 (626)
                      ..-.....       ....-++.......|.-+.  |.|-+ ..|+.|...|.|.+||+....    .++........|.
T Consensus       279 gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR  357 (385)
T KOG1034|consen  279 GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR  357 (385)
T ss_pred             chhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence            21111100       0111111222234444444  45555 689999999999999987422    2333333456889


Q ss_pred             EEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          447 SASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       447 ~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      ..+|+.||..|+...+|++|--||.-
T Consensus       358 Q~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  358 QTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999999999999999999999864

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=7.1e-18  Score=155.64  Aligned_cols=247  Identities=21%  Similarity=0.342  Sum_probs=174.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceee
Q 006909          185 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  264 (626)
Q Consensus       185 ~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (626)
                      ..+.|||||..|++-+.|..+.+|++.........            .+...                     ......+
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~------------~~~~~---------------------~~~~~~~   99 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA------------DGPLN---------------------FSKHLSY   99 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCC------------CCccc---------------------cccceeE
Confidence            45899999999999999999999998642110000            00000                     0001111


Q ss_pred             -ccCccceEEEEEc-------CCC-eEEEEeCCCcEEEeccCCCeeeEeec---CCC---CeEEEEEeeCCCCEEEEEeC
Q 006909          265 -HGHKGDVLDLAWS-------NSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHN---YVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       265 -~~h~~~V~~l~~s-------~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~---~v~~~~~~p~~~~~l~s~s~  329 (626)
                       ......|...+|-       |+. ++++.+.+.-|++||.-+|+....+.   |..   ...+++|+| +|.+|++|. 
T Consensus       100 r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-  177 (406)
T KOG2919|consen  100 RYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-  177 (406)
T ss_pred             EeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-
Confidence             1234567777774       443 88999999999999999998887764   444   356899999 999998775 


Q ss_pred             CCcEEEEeC-CCCeEE---E-----eccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909          330 DGKVRIWGV-CEKRVV---D-----WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  399 (626)
Q Consensus       330 dg~v~iwd~-~~~~~~---~-----~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  399 (626)
                      ...|++||+ +.|+-.   .     ..+..+.|.+++|+| +.+.+++|+....+-||.-.+...... +      ..|.
T Consensus       178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l-l------ggh~  250 (406)
T KOG2919|consen  178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL-L------GGHG  250 (406)
T ss_pred             cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee-e------cccC
Confidence            688999999 555422   2     233467899999999 455899999999998988766554322 1      1346


Q ss_pred             CCeEEEEEcCCCCcEEEEEeC-CCcEEEEeCCcceee-eeecCCCC---CeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          400 NKITGIQFSRDESQRIMITSE-DSKLRILDGVDVIHK-FKGLPKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~-dg~i~iwd~~~~~~~-~~~~~~~~---~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +.|+.++|.++| +.|++|+. |..|..||++..... +....|..   .-.-....|++++|++|+.||.|++||+++.
T Consensus       251 gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  251 GGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             CCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence            899999999998 56777665 789999998854332 22222322   2233455799999999999999999999984

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=2.1e-18  Score=167.35  Aligned_cols=207  Identities=18%  Similarity=0.265  Sum_probs=162.3

Q ss_pred             CeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCC--CCeEEE
Q 006909          280 NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR--DVISAI  356 (626)
Q Consensus       280 ~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~i~~i  356 (626)
                      -++++|+..++|+|||++...+.+.+ .|...|+++.++- ...+|++++..|.|.|..+.++.......+.  ..|.-+
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll  170 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL  170 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence            48999999999999999966666655 4999999999998 8899999999999999999988766555443  456689


Q ss_pred             EEeeCCCE-EEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee
Q 006909          357 CYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK  435 (626)
Q Consensus       357 ~~sp~g~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~  435 (626)
                      .|+|..+. |.+++.+|.|.+||+.+.......      ...|..+...|+|+|.+..+|++.+.|..|.+||++.....
T Consensus       171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~------~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~  244 (673)
T KOG4378|consen  171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA------SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST  244 (673)
T ss_pred             ecccccceeeEeeccCCeEEEEeccCCCcccch------hhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence            99997765 556888999999999887654332      33455889999999998889999999999999998733221


Q ss_pred             eeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc--cCCccceeeeccC
Q 006909          436 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ--KNSVRSCEHFFSE  494 (626)
Q Consensus       436 ~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~  494 (626)
                       .......+...++|+++|.+|+.|+..|.|+.||+.....|....  ....+.+++|.+.
T Consensus       245 -~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  245 -DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             -ceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence             112246789999999999999999999999999999875443321  1223455566543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.80  E-value=3.3e-18  Score=171.27  Aligned_cols=268  Identities=21%  Similarity=0.305  Sum_probs=200.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      .|..++|-|||..|+.+..+ .+.|||...                                             +..++
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~nd---------------------------------------------G~llq   47 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSD---------------------------------------------GTLLQ   47 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCC---------------------------------------------ccccc
Confidence            79999999999988777644 599999987                                             56688


Q ss_pred             eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                      ++++|...|++++|+.+| .+++|+.|+.|.+|.-.- +-+-.+.|.+.|.|+.|+| -.+.+++++.. ..-+|....+
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK  124 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQK  124 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeeccCCeeeEeecCc-hHHHhhhcchh-hccccChhhh
Confidence            999999999999999998 899999999999998652 2334567999999999999 88889998864 4778987665


Q ss_pred             eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC----cEEEE
Q 006909          342 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES----QRIMI  417 (626)
Q Consensus       342 ~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~----~~l~~  417 (626)
                      .+.. ......+.+++|..||++++.|-.+|+|.+-+..+....  .+.   +..+...+|.+++|+|..+    ..+++
T Consensus       125 ~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~--~I~---Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  125 SVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV--KIE---RPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             hHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce--EEe---CCCCCCCCceEEEecCCCCCCccceEEE
Confidence            4433 334567889999999999999999999999865544322  111   2334468999999999632    35666


Q ss_pred             EeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCc
Q 006909          418 TSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV  496 (626)
Q Consensus       418 ~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~  496 (626)
                      .....++.++.+.. .+..-  ..-.-...++.+-++|.|++.|+.|+.+.+|..++-..-.......-+-.+..+|++.
T Consensus       199 ~DW~qTLSFy~LsG~~Igk~--r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ  276 (1081)
T KOG1538|consen  199 ADWGQTLSFYQLSGKQIGKD--RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQ  276 (1081)
T ss_pred             EeccceeEEEEecceeeccc--ccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCc
Confidence            66667777776432 11111  1123345688889999999999999999999987754444444444455567889999


Q ss_pred             EEEEecCCCCc
Q 006909          497 SVAVQWPGIGT  507 (626)
Q Consensus       497 ~~av~~s~~~~  507 (626)
                      +++++.-++..
T Consensus       277 ~v~~GCqDGTi  287 (1081)
T KOG1538|consen  277 YVVVGCQDGTI  287 (1081)
T ss_pred             eEEEEEccCee
Confidence            88887544443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=2.3e-16  Score=165.61  Aligned_cols=369  Identities=24%  Similarity=0.351  Sum_probs=239.2

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      .+.+|...|.++.|.+.+..++.++.|+.+.+|+.....                                         
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----------------------------------------   98 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-----------------------------------------   98 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-----------------------------------------
Confidence            466899999999999999999999999999999988632                                         


Q ss_pred             ccCCCceeeccCc-cceEEEEE-cCCC--eEEEEeC-CCcEEEeccCC-CeeeEee-cCCCCeEEEEEeeCCCCEEEEEe
Q 006909          256 IEESPLQELHGHK-GDVLDLAW-SNSN--YLLSCSM-DKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       256 ~~~~~~~~~~~h~-~~V~~l~~-s~~~--~l~s~s~-d~~v~iwd~~~-~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                         ..+..+.++. ..+..+.+ ++++  .++..+. |+.+.+|+... ......+ .|...|..++|+| ++..+++++
T Consensus        99 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  174 (466)
T COG2319          99 ---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGS  174 (466)
T ss_pred             ---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecC
Confidence               0233344433 36666666 6655  3444444 99999999997 4554444 5889999999999 888888888


Q ss_pred             C-CCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          329 I-DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       329 ~-dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      . |+.+++|++..+... ....|...+.+++|+|++. .+++++.|+.+++||...........      ..|.... ..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~-~~  247 (466)
T COG2319         175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL------SGHSDSV-VS  247 (466)
T ss_pred             CCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec------CCCCcce-eE
Confidence            5 999999999975544 4556899999999999998 44455999999999877444322111      1122332 22


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCccee-eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCC
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS  484 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~  484 (626)
                      .|+|++ .++++++.|+.+++|+...... ......|...+.++.|+|++..+++++.|+.+.+|+..+........   
T Consensus       248 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---  323 (466)
T COG2319         248 SFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT---  323 (466)
T ss_pred             eECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee---
Confidence            899997 7888999999999999774332 22224568899999999999999999989999999887763221111   


Q ss_pred             ccceeeeccCCcEEEEecCCCCcccccc-cCCCccccCccccccCCCC-cccCCCcccCCccccCCCCcccccCCCCCCC
Q 006909          485 VRSCEHFFSEGVSVAVQWPGIGTEQKSL-CSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRGSATWPAEKL  562 (626)
Q Consensus       485 ~~~~~~~~~~g~~~av~~s~~~~~l~~~-~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i  562 (626)
                           ...+.+.+..+.+.+++..+... ..+   ..+..|....... ........+..+.+++ ..........++.+
T Consensus       324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  394 (466)
T COG2319         324 -----LKGHEGPVSSLSFSPDGSLLVSGGSDD---GTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTV  394 (466)
T ss_pred             -----ecccCCceEEEEECCCCCEEEEeecCC---CcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCce
Confidence                 01111123333331111122111 111   2222233322221 1111111156777777 43233312236789


Q ss_pred             CCCCcccCCCCCCCChhhHHHHhhhccC--CccccccccccceEEEEecCCceEeeeeecC
Q 006909          563 PLWDVTIDSDGYCQDPQQQRLQQQCLNN--VDDVRAISATWGLVIVTAGCDGMIKTFHNYG  621 (626)
Q Consensus       563 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~~g  621 (626)
                      .+|+.....           ........  ......+++ ++..+++++.++++++|+...
T Consensus       395 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         395 RLWDLSTGS-----------LLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EEEecccCe-----------eeeeccCCCCcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence            999988762           11111111  111122233 788899999999999999765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.79  E-value=4.7e-18  Score=170.24  Aligned_cols=244  Identities=18%  Similarity=0.293  Sum_probs=191.8

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      .-.+.++|+||++.|+|++|+.||+.+|+|+.|..|.||+-.-                                     
T Consensus        42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-------------------------------------   84 (1081)
T KOG1538|consen   42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-------------------------------------   84 (1081)
T ss_pred             CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-------------------------------------
Confidence            3456789999999999999999999999999999999997643                                     


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                              +.  .--..|...|.|+.|+|-+ .|++|+-. ..-+|..... .+........+.+++|.. +|.+|+.|-
T Consensus        85 --------EG--~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtn-DGqylalG~  151 (1081)
T KOG1538|consen   85 --------EG--ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTN-DGQYLALGM  151 (1081)
T ss_pred             --------cc--eeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecC-CCcEEEEec
Confidence                    00  1123699999999999976 78887764 5678877643 233334566889999998 999999999


Q ss_pred             CCCcEEEEeCCCCeEEEec---cCCCCeEEEEEeeCC-----CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          329 IDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDG-----KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g-----~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      .+|+|.+-+-...+...+.   +...+|.+++|+|..     ..+++.....++.+|.+.+.....        .+.-+.
T Consensus       152 ~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk--------~r~L~F  223 (1081)
T KOG1538|consen  152 FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK--------DRALNF  223 (1081)
T ss_pred             cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc--------cccCCC
Confidence            9999999887665544433   467889999999953     578888888899999887654321        222235


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      ...|+++.++| .+++.|+.|+.+.+|. ++.+..-+......+|.++...|++++++.|+.||+|-.|++..
T Consensus       224 dP~CisYf~NG-Ey~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  224 DPCCISYFTNG-EYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             CchhheeccCC-cEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            56789999998 7999999999999997 34444333333677999999999999999999999999999853

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.7e-18  Score=168.06  Aligned_cols=288  Identities=20%  Similarity=0.270  Sum_probs=214.2

Q ss_pred             cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      ..+.+...|..|.|.|+.+.|...|..|++|+.|..|.+||+..+..                                 
T Consensus       130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~---------------------------------  176 (559)
T KOG1334|consen  130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP---------------------------------  176 (559)
T ss_pred             HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc---------------------------------
Confidence            34556677889999999999999999999999999999999987321                                 


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCC---CeEEEEeCCCcEEEeccC-CCeeeEe---ecCCCCeEEEEEeeCCC
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVG-CNQCLNV---FDHHNYVTCVQFNPIDD  321 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~---~~l~s~s~d~~v~iwd~~-~~~~~~~---~~~~~~v~~~~~~p~~~  321 (626)
                                 .+.-..||...|....|.|.   ..+++++.||.|++=.+. ++.+..+   ..|.++|.-++.-|.+.
T Consensus       177 -----------~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp  245 (559)
T KOG1334|consen  177 -----------KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP  245 (559)
T ss_pred             -----------ccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC
Confidence                       12333478888888888874   389999999999998764 3433322   25999999999999888


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEE----eccCCC---CeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCcee-----eeE
Q 006909          322 NYFISGSIDGKVRIWGVCEKRVVD----WADVRD---VISAICYIPDGK-GFIVGSITGTCHFYKASGNDLK-----LEK  388 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~~~~~~~----~~~~~~---~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~-----~~~  388 (626)
                      ..|.+++.|+.+.-+|++.+....    ......   ...+++.+|... .+++|+.|..+++||.+.-...     +..
T Consensus       246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~  325 (559)
T KOG1334|consen  246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDK  325 (559)
T ss_pred             CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhh
Confidence            999999999999999998754322    222222   567889999654 8999999999999998754432     111


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--------------cc-eeeeeecCCCCCeEEEEE-cC
Q 006909          389 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--------------DV-IHKFKGLPKSGSQMSASF-TT  452 (626)
Q Consensus       389 ~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--------------~~-~~~~~~~~~~~~v~~~~~-sp  452 (626)
                      +..+.........|++++|+.++ .-++++..|-.|+++.-.              .. .+.|+++.+...|..+.| -|
T Consensus       326 f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP  404 (559)
T KOG1334|consen  326 FCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP  404 (559)
T ss_pred             cCCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC
Confidence            21111122334679999999887 467777788889998521              11 233778777788888876 68


Q ss_pred             CCCEEEEEeCCccEEEEECCCCCCC-CCCccCCccceeeeccCCcEEEEe
Q 006909          453 TGKHIISIGDDCRVYVWNYDELCFP-SSKQKNSVRSCEHFFSEGVSVAVQ  501 (626)
Q Consensus       453 ~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~g~~~av~  501 (626)
                      ...|+++||+-|.|.||+-.++... ....-..++.|+.-||.-.++|.+
T Consensus       405 rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  405 RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS  454 (559)
T ss_pred             ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence            8999999999999999999887332 222333478888888877766554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.78  E-value=3.7e-18  Score=165.64  Aligned_cols=214  Identities=16%  Similarity=0.274  Sum_probs=172.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceee
Q 006909          185 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  264 (626)
Q Consensus       185 ~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (626)
                      .|++......|+++||..+.|+|||+..                                             ....+.+
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~---------------------------------------------kl~hr~l  117 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRA---------------------------------------------KLIHRFL  117 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHH---------------------------------------------HHHhhhc
Confidence            3444334448999999999999999985                                             2335677


Q ss_pred             ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                      .+|+..|+++.++... +|++++..|.|.|..+.+++....|.+.  ..|.-+.|+|....+|.+++.+|.|.+||+.+.
T Consensus       118 kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~  197 (673)
T KOG4378|consen  118 KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM  197 (673)
T ss_pred             cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence            8999999999998654 9999999999999999999998888755  467799999966677889999999999999876


Q ss_pred             eEEE--eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909          342 RVVD--WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  418 (626)
Q Consensus       342 ~~~~--~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~  418 (626)
                      ....  ...|..+...|||+|. ..+|++.+.|..|.+||....... ..+..       ..+.+.++|+++| .+|++|
T Consensus       198 sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y-------~~Plstvaf~~~G-~~L~aG  268 (673)
T KOG4378|consen  198 SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST-DRLTY-------SHPLSTVAFSECG-TYLCAG  268 (673)
T ss_pred             CcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc-ceeee-------cCCcceeeecCCc-eEEEee
Confidence            6543  4578899999999995 567788899999999999865432 22222       2689999999998 899999


Q ss_pred             eCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCC
Q 006909          419 SEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG  454 (626)
Q Consensus       419 s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g  454 (626)
                      ...|.|..||++.   ++...  +.|...|++++|-|.-
T Consensus       269 ~s~G~~i~YD~R~~k~Pv~v~--sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  269 NSKGELIAYDMRSTKAPVAVR--SAHDASVTRVAFQPSP  305 (673)
T ss_pred             cCCceEEEEecccCCCCceEe--eecccceeEEEeeecc
Confidence            9999999999873   33333  4478889999997654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=4.7e-19  Score=181.68  Aligned_cols=275  Identities=23%  Similarity=0.366  Sum_probs=202.5

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      .+..+.|.||..+|.|+.|...|.+++||+.|..++||..++                                      
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--------------------------------------  221 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--------------------------------------  221 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccc--------------------------------------
Confidence            445667889999999999999999999999999999999887                                      


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEe
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                             ..++....||.+.|+.++.+.++ .++++|.|..|++|.+.++.++..+ +|++.|++++|+| -    .+.+
T Consensus       222 -------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-~----~sss  289 (1113)
T KOG0644|consen  222 -------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-R----ASSS  289 (1113)
T ss_pred             -------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-c----ccCC
Confidence                   45577889999999999999877 8899999999999999999998877 5999999999999 2    3778


Q ss_pred             CCCcEEEEeCCCCeEEE-----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          329 IDGKVRIWGVCEKRVVD-----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~-----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      .||++++||.+-.....     ......-+.++.|...+..+++|+.|+.-..|.+.......             ..+.
T Consensus       290 ~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-------------~~li  356 (1113)
T KOG0644|consen  290 DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-------------NLLI  356 (1113)
T ss_pred             CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc-------------cceE
Confidence            89999999998222211     12234557788888899999999999988887654322111             1122


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCE-EEEEeCCccEEEEECCCCCCCCCC
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYVWNYDELCFPSSK  480 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~-l~s~s~dg~I~iwd~~~~~~~~~~  480 (626)
                      -+.++.+-..+.+++-.+-.+.+|++.+.  .+...+  |...+..+.++|-... ..+++.||.+.|||+-.+......
T Consensus       357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  357 FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY  434 (1113)
T ss_pred             EEeccccccccceeeeeeeEeeeeecccchhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence            22222232246677777888999997765  444444  7778888999996654 568899999999999887322221


Q ss_pred             cc-CCccceeeeccCCcEEEEecCCCCcccccc
Q 006909          481 QK-NSVRSCEHFFSEGVSVAVQWPGIGTEQKSL  512 (626)
Q Consensus       481 ~~-~~~~~~~~~~~~g~~~av~~s~~~~~l~~~  512 (626)
                      .. .....-.+|+++|..+++.  ++...+..+
T Consensus       435 ~~gh~kl~d~kFSqdgts~~ls--d~hgql~i~  465 (1113)
T KOG0644|consen  435 FIGHGKLVDGKFSQDGTSIALS--DDHGQLYIL  465 (1113)
T ss_pred             ecccceeeccccCCCCceEecC--CCCCceEEe
Confidence            11 1122223788888876664  444444433

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=4.6e-17  Score=148.25  Aligned_cols=230  Identities=18%  Similarity=0.331  Sum_probs=170.8

Q ss_pred             ccCccceEEEEEcCCC------eEEEEeCCCcEEEeccCC--Ceee--Ee------ecCCCCeEEEEEeeCCCCEEEEEe
Q 006909          265 HGHKGDVLDLAWSNSN------YLLSCSMDKTVRMWQVGC--NQCL--NV------FDHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       265 ~~h~~~V~~l~~s~~~------~l~s~s~d~~v~iwd~~~--~~~~--~~------~~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                      ..|..+++.+.|.|+.      +|+|++ | .+|+|.+..  .+..  ..      -.+..++++..|+..+.+++.+.|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            3688999999999863      344443 3 699999863  2211  11      136679999999999999999999


Q ss_pred             CCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          329 IDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       329 ~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      .|-+..|||+.++.    ...+..|...|..++|...+ +.+++.+.||.+|+||++......  +....  .....+..
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST--IIYE~--p~~~~pLl  246 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST--IIYED--PSPSTPLL  246 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce--EEecC--CCCCCcce
Confidence            99999999999873    34578999999999999855 578899999999999998765432  22221  12246889


Q ss_pred             EEEEcCCCCcEEEEEeCC-CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCCCCCCCC
Q 006909          404 GIQFSRDESQRIMITSED-SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSK  480 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~d-g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~  480 (626)
                      .++|+++..+++++-..| ..|.|.|++.+. .......|.+.|++++|.|. ..+|+++++|..+.+||+......   
T Consensus       247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~---  323 (364)
T KOG0290|consen  247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE---  323 (364)
T ss_pred             eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc---
Confidence            999999988888887665 589999988432 23334559999999999996 578999999999999999875221   


Q ss_pred             ccCCccceeeeccCCcEEEEecCCC
Q 006909          481 QKNSVRSCEHFFSEGVSVAVQWPGI  505 (626)
Q Consensus       481 ~~~~~~~~~~~~~~g~~~av~~s~~  505 (626)
                        ......+++...+.+.-+.|++.
T Consensus       324 --~~~dPilay~a~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  324 --NGEDPILAYTAGGEVNQIQWSSS  346 (364)
T ss_pred             --CCCCchhhhhccceeeeeeeccc
Confidence              11122334445666777777744

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.78  E-value=9.7e-18  Score=150.67  Aligned_cols=243  Identities=15%  Similarity=0.288  Sum_probs=176.9

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      ...|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+                                       
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r---------------------------------------   46 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER---------------------------------------   46 (323)
T ss_pred             eeEeccccchheehhhccchh-hhcccccceEEEEEeecCc---------------------------------------
Confidence            445679999999999988775 8999999999999998843                                       


Q ss_pred             ccccCCCceeec-cCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeE-----------------------------
Q 006909          254 FQIEESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN-----------------------------  303 (626)
Q Consensus       254 ~~~~~~~~~~~~-~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~-----------------------------  303 (626)
                            +...+. .|...|+.+.--|++.|.+-+.|+.+.+|++..+..+.                             
T Consensus        47 ------~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y  120 (323)
T KOG0322|consen   47 ------DLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY  120 (323)
T ss_pred             ------cchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec
Confidence                  233333 34556666666666667777777777777664321110                             


Q ss_pred             --------------------ee-----cCCCCeEEEEEeeCCCC--EEEEEeCCCcEEEEeCCCCe-----------EEE
Q 006909          304 --------------------VF-----DHHNYVTCVQFNPIDDN--YFISGSIDGKVRIWGVCEKR-----------VVD  345 (626)
Q Consensus       304 --------------------~~-----~~~~~v~~~~~~p~~~~--~l~s~s~dg~v~iwd~~~~~-----------~~~  345 (626)
                                          ..     ...+.+.|..+...++.  +++.|-.+|.|.+||+.++.           +..
T Consensus       121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~  200 (323)
T KOG0322|consen  121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP  200 (323)
T ss_pred             CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence                                00     01233555554332333  46678889999999998863           223


Q ss_pred             eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc--eeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909          346 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND--LKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  422 (626)
Q Consensus       346 ~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~--~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg  422 (626)
                      ...|..+|.++.|.+.-..=++|+.+..+..|.+....  ++.. .....      .-.|..+..-||+ +.+++++.|+
T Consensus       201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk------npGv~gvrIRpD~-KIlATAGWD~  273 (323)
T KOG0322|consen  201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK------NPGVSGVRIRPDG-KILATAGWDH  273 (323)
T ss_pred             hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec------CCCccceEEccCC-cEEeecccCC
Confidence            55788999999999877777888889999999886542  2222 11111      2568889999997 7999999999


Q ss_pred             cEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          423 KLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       423 ~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      .|+||..++  +...++.  |.+.|++++|+|+...+|++|.|++|.+|++
T Consensus       274 RiRVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  274 RIRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cEEEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999775  4444554  7899999999999999999999999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=7.7e-17  Score=167.67  Aligned_cols=424  Identities=14%  Similarity=0.181  Sum_probs=252.5

Q ss_pred             ccccccccccCcEEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccC------CCCCeeeecCCCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN------AKEGKIKFGKKKS  242 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~---~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  242 (626)
                      .+.+.|.+|..+++.+.+.|...   ++.+++.||.|++||...+.... .+.........      .......+.....
T Consensus        48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk-t~~~~~~v~~~~~~~~~a~~s~~~~~s~~~  126 (792)
T KOG1963|consen   48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK-TFDNNLPVHALVYKPAQADISANVYVSVED  126 (792)
T ss_pred             hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE-EEecCCceeEEEechhHhCccceeEeeccc
Confidence            34557889999999999988654   78899999999999998764422 11111111000      0000011000000


Q ss_pred             CCceeecCC----c-----cccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEe-----ecCC
Q 006909          243 SHVPVVIPD----E-----VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHH  308 (626)
Q Consensus       243 ~~~~~~~~~----~-----~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~-----~~~~  308 (626)
                      .........    .     +-.....+...+..|.. -.+|.+++.+.+.....+..+.+|+...+.....     ..|.
T Consensus       127 ~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Ht  205 (792)
T KOG1963|consen  127 YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHT  205 (792)
T ss_pred             ceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhc
Confidence            000000000    0     00001111222233333 4567788888777777788899999987551111     1377


Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc
Q 006909          309 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  383 (626)
Q Consensus       309 ~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~  383 (626)
                      -.++|.+++| +++++++|..||.|.+|.--.     .....+.=|...|++++|+++|.+|++|+..|.+.+|.+.+++
T Consensus       206 f~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  206 FNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             ccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            7799999999 999999999999999995432     2233344577899999999999999999999999999999887


Q ss_pred             eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee--eeeec---------CCCCCeEEEEEcC
Q 006909          384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KFKGL---------PKSGSQMSASFTT  452 (626)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~---------~~~~~v~~~~~sp  452 (626)
                      ...-        +.-+.+|..+.++||+ .+.+....|+.|.+....+...  .+.+.         ...+-.+.++++|
T Consensus       285 kqfL--------PRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp  355 (792)
T KOG1963|consen  285 KQFL--------PRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP  355 (792)
T ss_pred             cccc--------cccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence            4321        1124899999999997 6888888899999998643211  11111         1234567888999


Q ss_pred             CCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCC-----cEEEEecCCCCcccccccCC-------Ccccc
Q 006909          453 TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG-----VSVAVQWPGIGTEQKSLCSS-------SLRDC  520 (626)
Q Consensus       453 ~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~av~~s~~~~~l~~~~~~-------~~~~~  520 (626)
                      .-+.++-.+..|.|.+||+-+.......+.-    -...+++.     .+.+++.+-.|..++.....       .....
T Consensus       356 r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~----~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~  431 (792)
T KOG1963|consen  356 RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVC----DENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS  431 (792)
T ss_pred             CCCceeecCCCceEEEEeccccceeeeEEEE----eecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence            7777888889999999999875322111110    00111111     12345555556655543211       11233


Q ss_pred             CccccccCCC-------CcccCCCcccCCccc-cCCCC-cccccCCCCCCCCCCCcccCC------CCCCCChhhHHHHh
Q 006909          521 SQKWDNLETA-------PWIRDSERFSLGSWF-SNDGP-CRGSATWPAEKLPLWDVTIDS------DGYCQDPQQQRLQQ  585 (626)
Q Consensus       521 ~~~w~~~~~~-------~~~~~~~~~~~~~~~-s~dg~-~l~s~~~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~  585 (626)
                      +++|......       ....+|+......+| ++-.. +.++++. ++.+++|-....+      ..-.|     ....
T Consensus       432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~-dg~~KiW~~~~~~n~~k~~s~W~c-----~~i~  505 (792)
T KOG1963|consen  432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASV-DGDFKIWVFTDDSNIYKKSSNWTC-----KAIG  505 (792)
T ss_pred             EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEecc-CCeEEEEEEecccccCcCccceEE-----eeee
Confidence            5666653321       223445444333333 34333 6777777 7899999774331      00011     0011


Q ss_pred             hhccCCccccccccccceEEEEecCCceEeeeee
Q 006909          586 QCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       586 ~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                      .++.......+++. || .++++|.|++|.+|+.
T Consensus       506 sy~k~~i~a~~fs~-dG-slla~s~~~~Itiwd~  537 (792)
T KOG1963|consen  506 SYHKTPITALCFSQ-DG-SLLAVSFDDTITIWDY  537 (792)
T ss_pred             ccccCcccchhhcC-CC-cEEEEecCCEEEEecC
Confidence            12222222234455 77 5888899999999984

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=2.2e-17  Score=157.09  Aligned_cols=265  Identities=22%  Similarity=0.389  Sum_probs=183.6

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ....|..|..+|+++.|+|+|..||+|+++|.|.+|........    ..+.  .                   ......
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~----~~d~--e-------------------~~~~ke  111 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF----DADT--E-------------------ADLNKE  111 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc----cccc--h-------------------hhhCcc
Confidence            34567899999999999999999999999999999987641110    0000  0                   000000


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                          .....+.+.+|...|..++|+|++ .+++++.|..+++||+..|+....+. |...|..++|.| -++++++-+.|
T Consensus       112 ----~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~d  186 (434)
T KOG1009|consen  112 ----KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSD  186 (434)
T ss_pred             ----ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccC
Confidence                012246677899999999999998 89999999999999999999998885 999999999999 89999999999


Q ss_pred             CcEEEEeCCCCeEEEecc--------------------C----CCCeEEEEEeeCCCEEEEEec----CC-----cEEEE
Q 006909          331 GKVRIWGVCEKRVVDWAD--------------------V----RDVISAICYIPDGKGFIVGSI----TG-----TCHFY  377 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~--------------------~----~~~i~~i~~sp~g~~l~~g~~----dg-----~i~i~  377 (626)
                      ...+.+.+...++.....                    |    +.-...++|+|+|..+++...    .+     +.++|
T Consensus       187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvf  266 (434)
T KOG1009|consen  187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVF  266 (434)
T ss_pred             cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEee
Confidence            888877776544332111                    0    111345789999999988542    22     23444


Q ss_pred             EcCCCceeeeEEeeccccccCCCCeEEEEEcCC--------C--------CcEEEEEeCCCcEEEEeCCcce--eeeeec
Q 006909          378 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD--------E--------SQRIMITSEDSKLRILDGVDVI--HKFKGL  439 (626)
Q Consensus       378 d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--------~--------~~~l~~~s~dg~i~iwd~~~~~--~~~~~~  439 (626)
                      +-..-..+...+..      ...+...+.|+|-        .        -+.+++....+.|.|||+....  ......
T Consensus       267 srk~l~rP~~~lp~------~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~ni  340 (434)
T KOG1009|consen  267 SRKDLKRPAARLPS------PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNI  340 (434)
T ss_pred             ccccccCceeecCC------CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeee
Confidence            43322222221111      1234444444331        0        0244555566789999988643  333322


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          440 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       440 ~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                       |-..++.++|+++|.+|+..|.||-..+--++..
T Consensus       341 -hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  341 -HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             -eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence             7789999999999999999999998888777765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=3.8e-17  Score=154.69  Aligned_cols=206  Identities=20%  Similarity=0.303  Sum_probs=162.4

Q ss_pred             ceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeee-------E-eecCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          261 LQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCL-------N-VFDHHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~-------~-~~~~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                      .-.+.||+++|.+++|+|-  ..++|||.|.+|.||++-.+...       . ..+|...|.-++|+|...+.|++++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            4456799999999999984  48999999999999998654332       2 235999999999999889999999999


Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      .+|.+|++.+++.+....|.+.|.+++|+.+|.+|++.+.|..|+|||.+.+....+.....      +.....+.|-.+
T Consensus       154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he------G~k~~Raifl~~  227 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE------GAKPARAIFLAS  227 (472)
T ss_pred             ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc------CCCcceeEEecc
Confidence            99999999999977777799999999999999999999999999999999988765542222      245566778888


Q ss_pred             CCcEEEEEe----CCCcEEEEeCCcceee--eeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909          411 ESQRIMITS----EDSKLRILDGVDVIHK--FKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       411 ~~~~l~~~s----~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~  474 (626)
                      | . +++.+    .+.++-+||..+....  +........|.---|.+|...|..++ .|+.|+-|.+.+.
T Consensus       228 g-~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  228 G-K-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             C-c-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            7 4 55543    3578999996543222  22223445666666788888877655 6999999999875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.5e-17  Score=153.42  Aligned_cols=191  Identities=14%  Similarity=0.237  Sum_probs=150.3

Q ss_pred             CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeC-CCCEEEEEeCCCcEEEEeCCCCeEE---EeccCC-CCe
Q 006909          280 NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGSIDGKVRIWGVCEKRVV---DWADVR-DVI  353 (626)
Q Consensus       280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~-~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~~~-~~i  353 (626)
                      ..++++-..|.|++||..+++.+..|. ++..++.++|... .++.+.+++.||+|++||++.....   .+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            468888889999999999999999995 7778888888763 4678999999999999999875432   334443 567


Q ss_pred             EEEEEeeCCCEEEEEec----CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909          354 SAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       354 ~~i~~sp~g~~l~~g~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~  429 (626)
                      .+++....++.+++|+.    +-.+.+||++..+..+..+     ...|...||++.|+|..+.+|++|+.||-|.|||+
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~-----~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL-----NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh-----hhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            77777778888888864    5689999999887643322     23456899999999999999999999999999998


Q ss_pred             Ccce---eeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECCCCC
Q 006909          430 VDVI---HKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       430 ~~~~---~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      ....   .......+...|..+.|..++ +.|.+-+...+..+|+++.+.
T Consensus       196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            6321   122223356779999998777 558888899999999999873

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.8e-18  Score=182.93  Aligned_cols=238  Identities=16%  Similarity=0.221  Sum_probs=171.4

Q ss_pred             ccceEEEEEcCC-----CeEEEEeCCCcEEEeccCC---Ceee---Eee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          268 KGDVLDLAWSNS-----NYLLSCSMDKTVRMWQVGC---NQCL---NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       268 ~~~V~~l~~s~~-----~~l~s~s~d~~v~iwd~~~---~~~~---~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      ....+.++|.+.     |.|+.|..||.|.+||...   +...   .++ .|++.|..+.|++..++.|++|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            456788999753     4699999999999999865   3222   222 499999999999978889999999999999


Q ss_pred             EeCCCCeEEE---eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          336 WGVCEKRVVD---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       336 wd~~~~~~~~---~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      ||+..-+.-.   .....+.|.+++|+.. ...|++++.+|.+.|||++..+..+..-...+     ...+..++|+|++
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~-----~~~~S~l~WhP~~  218 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG-----RMHCSVLAWHPDH  218 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC-----ccceeeeeeCCCC
Confidence            9998733222   2234577999999874 45788899999999999998865443222221     1558899999999


Q ss_pred             CcEEEEEeCCC---cEEEEeCC---cceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECCCCCCCCCCcc-C
Q 006909          412 SQRIMITSEDS---KLRILDGV---DVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQK-N  483 (626)
Q Consensus       412 ~~~l~~~s~dg---~i~iwd~~---~~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~  483 (626)
                      ...+++++.|.   .|.+||++   ...+.+++  |...|.++.|++.+ .+|++++.|+.|.+|+.+++........ .
T Consensus       219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~  296 (1049)
T KOG0307|consen  219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG  296 (1049)
T ss_pred             ceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC
Confidence            88888888774   79999987   34555544  88999999999876 8999999999999999999743322211 1


Q ss_pred             CccceeeeccCCc-EEEEecCCCCcccccc
Q 006909          484 SVRSCEHFFSEGV-SVAVQWPGIGTEQKSL  512 (626)
Q Consensus       484 ~~~~~~~~~~~g~-~~av~~s~~~~~l~~~  512 (626)
                      .-..-+.|.|... .+|++.-.+...++.+
T Consensus       297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  297 NWCFDVQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             cceeeeeecCCCcchhhhheeccceeeeee
Confidence            2222234555444 3344433333444443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=7.2e-17  Score=152.33  Aligned_cols=208  Identities=19%  Similarity=0.307  Sum_probs=164.2

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC------CCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~------~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                      .+.+.+|.+.|++|.|+.++ .|++|+.|..+++|+++      +.+++....  |...|.|++|+. .+.++++|..++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~  127 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcc
Confidence            45677999999999999877 89999999999999984      345666654  557999999998 888999999999


Q ss_pred             cEEEEeCCCCeEEEeccCCC---CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          332 KVRIWGVCEKRVVDWADVRD---VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~~~~~---~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      +|.+.|+.+.+.+....+..   .|..+..+|-.+.|++.+.++.|.+||.+........+....    .+.....+.|+
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN----~~~~F~t~~F~  203 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN----SGKNFYTAEFH  203 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC----CCccceeeeec
Confidence            99999999999887777655   899999999999999999999999999987764444332221    23567888999


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeee------eecCC-CCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKF------KGLPK-SGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~------~~~~~-~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      |-.+.+|++.+..+-+.+||.+.....+      .+... ...-+++.|+|+|+.+++--....-.+||+-+
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence            9988999999999999999977433221      11111 22336788999999988776555556667655

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=4.6e-17  Score=151.63  Aligned_cols=258  Identities=19%  Similarity=0.269  Sum_probs=180.8

Q ss_pred             cccccccccccCcEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          171 LYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      ....+.+++|+..++.++|..  .+..+.+|+.||+|++||+.....                                 
T Consensus        60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e---------------------------------  106 (376)
T KOG1188|consen   60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE---------------------------------  106 (376)
T ss_pred             hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh---------------------------------
Confidence            446678899999999999987  456899999999999999987322                                 


Q ss_pred             cCCccccccCCCceeeccCc-cceEEEEEcCCC-eEEEEe----CCCcEEEeccCCCee-eEee--cCCCCeEEEEEeeC
Q 006909          249 IPDEVFQIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCS----MDKTVRMWQVGCNQC-LNVF--DHHNYVTCVQFNPI  319 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~-~l~s~s----~d~~v~iwd~~~~~~-~~~~--~~~~~v~~~~~~p~  319 (626)
                                .+.....+|. .+..+++.+-.+ .+++|.    .+-.|.+||++..+. +..+  .|.+.|++++|+|.
T Consensus       107 ----------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~  176 (376)
T KOG1188|consen  107 ----------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS  176 (376)
T ss_pred             ----------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence                      2233444454 466667665333 555543    356799999988766 6655  39999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEee---
Q 006909          320 DDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDF---  391 (626)
Q Consensus       320 ~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---  391 (626)
                      ++++|++||.||-|.+||+....    +.....+...|.++.|..++ +.|.+-+..++..+|+++.+.........   
T Consensus       177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~  256 (376)
T KOG1188|consen  177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS  256 (376)
T ss_pred             CCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch
Confidence            99999999999999999997642    45567788889999999887 56888899999999999877643221000   


Q ss_pred             -cc-ccccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEeCC--------cceeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909          392 -HD-RKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGV--------DVIHKFKGLPKSGSQMSASFTTTGKHIISI  460 (626)
Q Consensus       392 -~~-~~~~~~~~i~~l~~s~~~~~~l~~~s~-dg~i~iwd~~--------~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~  460 (626)
                       .. +.......+... .+|.+...+++++. -++..++-..        +....+.+ +|..-|.++.|...+.++.||
T Consensus       257 ~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~TG  334 (376)
T KOG1188|consen  257 ADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYTG  334 (376)
T ss_pred             hhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeecc
Confidence             00 000011122222 23433345555544 5666665422        22233332 266678889998899999999


Q ss_pred             eCCccEEEEECCC
Q 006909          461 GDDCRVYVWNYDE  473 (626)
Q Consensus       461 s~dg~I~iwd~~~  473 (626)
                      ++||.+.+|..+.
T Consensus       335 GEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  335 GEDGLLQAWKVED  347 (376)
T ss_pred             CCCceEEEEecCC
Confidence            9999999999744

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=6e-16  Score=163.03  Aligned_cols=284  Identities=15%  Similarity=0.166  Sum_probs=193.7

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .+..+.-..+.|+|-...++++...-.|+|||.+.++..                                         
T Consensus      1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l----------------------------------------- 1099 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL----------------------------------------- 1099 (1387)
T ss_pred             hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCcee-----------------------------------------
Confidence            344556778999999999999987788999999875431                                         


Q ss_pred             CCCceeec---cCccceEEEEEcCC---CeEEEEeCCCcEEEeccC-C----CeeeEeec--------CCCCeEEEEEee
Q 006909          258 ESPLQELH---GHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVG-C----NQCLNVFD--------HHNYVTCVQFNP  318 (626)
Q Consensus       258 ~~~~~~~~---~h~~~V~~l~~s~~---~~l~s~s~d~~v~iwd~~-~----~~~~~~~~--------~~~~v~~~~~~p  318 (626)
                          ..+.   .....|+.+.+-++   .++++|+.||.|+||+-- .    .+.+..+.        ..+.-.-+.|..
T Consensus      1100 ----~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ 1175 (1387)
T KOG1517|consen 1100 ----NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ 1175 (1387)
T ss_pred             ----ccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh
Confidence                1111   23457888888653   289999999999999642 2    22332221        111124567877


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEec--cCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc
Q 006909          319 IDDNYFISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  395 (626)
Q Consensus       319 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  395 (626)
                       ...+|++++.-..|+|||.....++.-.  +....|++++-+. .|+.+++|..||.+++||.+..........    .
T Consensus      1176 -~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~----~ 1250 (1387)
T KOG1517|consen 1176 -QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV----Y 1250 (1387)
T ss_pred             -hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee----e
Confidence             4445555555789999999988777633  3445567665433 579999999999999999987654321111    1


Q ss_pred             ccCCCC--eEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-ceee-eeecCC---CCCeEEEEEcCCCCEEEEEeCCccEEE
Q 006909          396 KTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHK-FKGLPK---SGSQMSASFTTTGKHIISIGDDCRVYV  468 (626)
Q Consensus       396 ~~~~~~--i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~~~~-~~~~~~---~~~v~~~~~sp~g~~l~s~s~dg~I~i  468 (626)
                      +.|...  |..+.+.+.|-..|++|+.+|.|++||++. .... +....|   .+..+++..+++...+|+|+. +.|+|
T Consensus      1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred             cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE
Confidence            222233  999999998866799999999999999875 2222 222112   235899999999999999998 99999


Q ss_pred             EECCCCCCC-------CCCccCCccceeeeccCCcEEEEecCCCCcccccc
Q 006909          469 WNYDELCFP-------SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL  512 (626)
Q Consensus       469 wd~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~  512 (626)
                      |++......       .........+|++|||....+|+++.+....+++.
T Consensus      1330 y~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1330 YSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             EecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence            999876221       22233344588889988888787755554444443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.73  E-value=8.4e-16  Score=146.39  Aligned_cols=287  Identities=17%  Similarity=0.287  Sum_probs=191.3

Q ss_pred             cCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          181 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       181 ~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      ..+|.++.|.++.. .||||+.|..|+||.+.......             ....                       -.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-------------~~~~-----------------------V~   56 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-------------GDMK-----------------------VE   56 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCC-------------Ccee-----------------------EE
Confidence            46799999999877 99999999999999987632110             0001                       12


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC--------C-----C---eeeEee-cCCCCeEEEEEeeCCC
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--------C-----N---QCLNVF-DHHNYVTCVQFNPIDD  321 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~--------~-----~---~~~~~~-~~~~~v~~~~~~p~~~  321 (626)
                      .+..+..|...|+++.|+|+| .|++|+.+|.|.+|...        +     .   ...+.. .|...|..++|+| ++
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~  135 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DS  135 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CC
Confidence            356778999999999999998 99999999999999765        2     1   111222 3889999999999 99


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEE--eeccc-ccc
Q 006909          322 NYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV--DFHDR-KKT  397 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~--~~~~~-~~~  397 (626)
                      +++++++.|..+++||+..+.+.. ..+|...+..++|.|-++++++-+.|...+.+.+...+.....-  .+... ...
T Consensus       136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~  215 (434)
T KOG1009|consen  136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE  215 (434)
T ss_pred             ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence            999999999999999999999876 56788999999999999999999999877777766544322210  11100 000


Q ss_pred             -------------CCCCeEEEEEcCCCCcEEEEEeC----C-----CcEEEEeCCc---ceeeeeecCCCCCeEEEEEcC
Q 006909          398 -------------SGNKITGIQFSRDESQRIMITSE----D-----SKLRILDGVD---VIHKFKGLPKSGSQMSASFTT  452 (626)
Q Consensus       398 -------------~~~~i~~l~~s~~~~~~l~~~s~----d-----g~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp  452 (626)
                                   .......++|+|+| .++++.+.    +     ++.++++...   +...+..  ...+...+.|+|
T Consensus       216 ~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~p  292 (434)
T KOG1009|consen  216 REGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSP  292 (434)
T ss_pred             CCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeee
Confidence                         11223457789998 56666432    2     2345555332   2222211  223333444333


Q ss_pred             ------------------CCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccC
Q 006909          453 ------------------TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  514 (626)
Q Consensus       453 ------------------~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~  514 (626)
                                        -+-.++.++ .+.|+|||.++.. |.     ....-+++   ..+..++|++||..++..+.
T Consensus       293 Vy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~-P~-----~~v~nihy---~~iTDiaws~dg~~l~vSS~  362 (434)
T KOG1009|consen  293 VYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLE-PL-----AVVDNIHY---SAITDIAWSDDGSVLLVSST  362 (434)
T ss_pred             eEEEeccccccccccccccceEEEEee-cceEEEecccccc-ce-----EEEeeeee---eeecceeecCCCcEEEEecc
Confidence                              233344554 5689999988741 11     11112233   23667888888888887666


Q ss_pred             CCc
Q 006909          515 SSL  517 (626)
Q Consensus       515 ~~~  517 (626)
                      |+.
T Consensus       363 DGy  365 (434)
T KOG1009|consen  363 DGF  365 (434)
T ss_pred             CCc
Confidence            543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=4.5e-16  Score=162.03  Aligned_cols=248  Identities=19%  Similarity=0.181  Sum_probs=182.8

Q ss_pred             ccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          180 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       180 H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      -...|+|++|+|. ..+||.|..+|.|.+||+..+.....                                       .
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------------------------------s  281 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---------------------------------------S  281 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---------------------------------------c
Confidence            4678999999995 55888889999999999987432100                                       0


Q ss_pred             CCceeeccCccceEEEEEcCC---CeEEEEeCCCcEEEeccCCCee------eEee-------cCCCCeEEEEEeeCCCC
Q 006909          259 SPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQC------LNVF-------DHHNYVTCVQFNPIDDN  322 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~---~~l~s~s~d~~v~iwd~~~~~~------~~~~-------~~~~~v~~~~~~p~~~~  322 (626)
                      ..-.....|..+++.+.|..+   ..+++++.||.|..|+++.-..      ....       .....+++++|.+.+.+
T Consensus       282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~  361 (555)
T KOG1587|consen  282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN  361 (555)
T ss_pred             ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence            011223469999999999754   2699999999999998753322      1111       12346899999998999


Q ss_pred             EEEEEeCCCcEEEEeC---CCCe------EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc
Q 006909          323 YFISGSIDGKVRIWGV---CEKR------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  393 (626)
Q Consensus       323 ~l~s~s~dg~v~iwd~---~~~~------~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~  393 (626)
                      .|+.|+.+|.|.--..   +...      ......|.++|+++.++|-+..++..+.|.+++||.......+......  
T Consensus       362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~--  439 (555)
T KOG1587|consen  362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS--  439 (555)
T ss_pred             eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh--
Confidence            9999999999877333   2222      2245677899999999998877766666999999998733333322221  


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909          394 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  469 (626)
Q Consensus       394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw  469 (626)
                          +...+++++|||..+..++++..||.|.+||+..    +......  +......+.|+++|+.|++|...|++++|
T Consensus       440 ----~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~  513 (555)
T KOG1587|consen  440 ----SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHIL  513 (555)
T ss_pred             ----ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEE
Confidence                2256999999999888999999999999999752    2222222  34556778888999999999999999999


Q ss_pred             ECCCC
Q 006909          470 NYDEL  474 (626)
Q Consensus       470 d~~~~  474 (626)
                      ++...
T Consensus       514 ~l~~~  518 (555)
T KOG1587|consen  514 KLSES  518 (555)
T ss_pred             EcCch
Confidence            99864

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.73  E-value=4.3e-17  Score=146.55  Aligned_cols=296  Identities=14%  Similarity=0.131  Sum_probs=195.3

Q ss_pred             CCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      ..|...+.+|.+.|+++.|..+++|++|...|.|++|++.+.+....+.  +...|+.+..-| + ..+.+-+.|+.+.+
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLIL   81 (323)
T ss_pred             CCCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEE
Confidence            3466777899999999999999999999999999999999988887776  677899999888 4 77888999999999


Q ss_pred             EeCCCCeEEEeccCCCCeEEEEEeeC-----CC----EEEEEecCC-cEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          336 WGVCEKRVVDWADVRDVISAICYIPD-----GK----GFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       336 wd~~~~~~~~~~~~~~~i~~i~~sp~-----g~----~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      |++..+..+....  -.++++-|.+.     ++    .++.-+... .+++-|.  +.. ..............+.+++.
T Consensus        82 w~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~--g~~-tqv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   82 WTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG--GDT-TQVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             EEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhcc--Ccc-ceeEccCchhccccCceeee
Confidence            9998766554322  33444444432     21    111111100 0111111  111 11111112223344677777


Q ss_pred             EEcCC-CC-cEEEEEeCCCcEEEEeCCccee----------eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          406 QFSRD-ES-QRIMITSEDSKLRILDGVDVIH----------KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       406 ~~s~~-~~-~~l~~~s~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      .+..+ ++ -++++|.++|.+.+||+.....          ......|..+|.++.|.+.-..=++|+.+..+..|+++.
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH  236 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence            75432 22 3566788899999999875422          222345788999999987666667788888888888875


Q ss_pred             CCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCccc
Q 006909          474 LCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG  553 (626)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  553 (626)
                      .......              +..                                   +.....-+.++.+-||++.+|
T Consensus       237 s~gslq~--------------~~e-----------------------------------~~lknpGv~gvrIRpD~KIlA  267 (323)
T KOG0322|consen  237 STGSLQI--------------RKE-----------------------------------ITLKNPGVSGVRIRPDGKILA  267 (323)
T ss_pred             ccCcccc--------------cce-----------------------------------EEecCCCccceEEccCCcEEe
Confidence            3100000              000                                   001111256677889999999


Q ss_pred             ccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEecCCceEeeeeec
Q 006909          554 SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       554 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                      +|+| |++|+|++-.+..         +.....++.......+|++ +..++|.||.|++|.+|+.|
T Consensus       268 TAGW-D~RiRVyswrtl~---------pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  268 TAGW-DHRIRVYSWRTLN---------PLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKLY  323 (323)
T ss_pred             eccc-CCcEEEEEeccCC---------chhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeecC
Confidence            9999 8999999888872         1222334444444567777 67899999999999999987

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.4e-15  Score=158.36  Aligned_cols=340  Identities=17%  Similarity=0.232  Sum_probs=225.3

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .|+-.++|.++||+++++|+|..||.|.+|.--...                                         ...
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-----------------------------------------~~~  241 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-----------------------------------------DDS  241 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccc-----------------------------------------ccc
Confidence            577889999999999999999999999999643200                                         012


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      ...+.++=|...|++++|+++| +|++|+..|.+.+|.+.+++....-+..++|..+.++| ++++.+....|+.|.+..
T Consensus       242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~  320 (792)
T KOG1963|consen  242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIK  320 (792)
T ss_pred             ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEe
Confidence            2356677799999999999998 99999999999999999998444446889999999999 999999999999999987


Q ss_pred             CCCCeEEEe------------ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccc---cccCCCC
Q 006909          338 VCEKRVVDW------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDR---KKTSGNK  401 (626)
Q Consensus       338 ~~~~~~~~~------------~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~---~~~~~~~  401 (626)
                      ..+......            ....+-.+.++++|.-+.++..+..|.|.+||+-+.....+ .+..+..   ...+...
T Consensus       321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~  400 (792)
T KOG1963|consen  321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVG  400 (792)
T ss_pred             ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEe
Confidence            754332221            11244567889999888899999999999999988776544 1111111   1122346


Q ss_pred             eEEEEEcCCCCcEEEEEeC--------CC--cEEEEeCCcceee-----eeecCCCCCeEEEEEc-CCCC-EEEEEeCCc
Q 006909          402 ITGIQFSRDESQRIMITSE--------DS--KLRILDGVDVIHK-----FKGLPKSGSQMSASFT-TTGK-HIISIGDDC  464 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~--------dg--~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~s-p~g~-~l~s~s~dg  464 (626)
                      ++.++.+..| .++++.-.        ||  .+++|--....+.     ....+|...+...+|. +... ..++++.||
T Consensus       401 itav~~~~~g-s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg  479 (792)
T KOG1963|consen  401 ITAVARSRFG-SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG  479 (792)
T ss_pred             eeeehhhccc-eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC
Confidence            7788888886 68887632        33  5677864322222     2224566655555554 3333 789999999


Q ss_pred             cEEEEECCCCCCCCCCccCCccceeeec--cCCcEEEEecCCCCcccccccCCCccccCccccccCCCCc---ccCCCcc
Q 006909          465 RVYVWNYDELCFPSSKQKNSVRSCEHFF--SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPW---IRDSERF  539 (626)
Q Consensus       465 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~--~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~  539 (626)
                      .++||-+.+.....  .......|.+.+  +.-...+.+|+.||..|+....    ..+.+|+..+...+   .......
T Consensus       480 ~~KiW~~~~~~n~~--k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~----~~Itiwd~~~~~~l~~~~~~~~~~  553 (792)
T KOG1963|consen  480 DFKIWVFTDDSNIY--KKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFD----DTITIWDYDTKNELLCTEGSRNWP  553 (792)
T ss_pred             eEEEEEEecccccC--cCccceEEeeeeccccCcccchhhcCCCcEEEEecC----CEEEEecCCChhhhhccccccccc
Confidence            99999996542221  223344444443  3445667788888877665333    33566666542111   1111112


Q ss_pred             cCCccccC----CCCcccccCCCCCCCCCCCcccC
Q 006909          540 SLGSWFSN----DGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       540 ~~~~~~s~----dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      +..+.|-.    ++. +..++.  ..+.+|++-..
T Consensus       554 ~~~~~~~~~~~~~~~-~~~~~~--~~l~~WNll~~  585 (792)
T KOG1963|consen  554 IAELLFTAQTQNDGA-LVHATQ--QRLSVWNLLSM  585 (792)
T ss_pred             hHhHhhhcccccccc-eeeccC--ceEehHhhhhh
Confidence            33333322    232 333443  56888988765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.71  E-value=1e-15  Score=139.63  Aligned_cols=242  Identities=14%  Similarity=0.220  Sum_probs=176.3

Q ss_pred             cccCcEEEEEEcCCCC-----EEEEEeCCCcEEEEEcCCC--cceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          179 AHKGCIWTLKFSPDGR-----YLASGGEDGVVRIWHVTSV--AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~-----~Latgs~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      .|.-+++.+.|.|+..     +|||.+.  .+|+|.+...  ........                              
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L------------------------------  141 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVL------------------------------  141 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhh------------------------------
Confidence            6899999999999863     6777653  6999998741  11100000                              


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCee----eEeecCCCCeEEEEEeeCCCCEEE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC----LNVFDHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~~p~~~~~l~  325 (626)
                              ....-..+..++++..|+.-  +++.++|-|.+..|||++++..    .+.+.|...|..++|....-+.|+
T Consensus       142 --------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA  213 (364)
T KOG0290|consen  142 --------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA  213 (364)
T ss_pred             --------ccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE
Confidence                    00111235679999999853  4899999999999999998733    345579999999999985567899


Q ss_pred             EEeCCCcEEEEeCCCCe---EEEeccC-CCCeEEEEEee-CCCEEEEEecC-CcEEEEEcCCCceeeeEEeeccccccCC
Q 006909          326 SGSIDGKVRIWGVCEKR---VVDWADV-RDVISAICYIP-DGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSG  399 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~---~~~~~~~-~~~i~~i~~sp-~g~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~  399 (626)
                      +.+.||.||+||++..+   ++..... ..+...++|++ |-+++|+-..| ..|.+.|++....++..      ...|.
T Consensus       214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~------L~~H~  287 (364)
T KOG0290|consen  214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR------LRNHQ  287 (364)
T ss_pred             EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh------hhcCc
Confidence            99999999999998754   2222222 56788899988 45677775554 57999999987766543      33456


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-----eeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEE
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVY  467 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~  467 (626)
                      +.|.+++|.|..+..|.+++.|..+.|||+.....     .+......+.|+.+.|++ .+.+|+.+.. +.+.
T Consensus       288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kkle  360 (364)
T KOG0290|consen  288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLE  360 (364)
T ss_pred             ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-Ceee
Confidence            89999999999889999999999999999864433     111122567899999985 5677777653 3443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=4.9e-15  Score=150.64  Aligned_cols=281  Identities=12%  Similarity=0.164  Sum_probs=174.7

Q ss_pred             EEEEeCCCcEEEeccCC-Ce--eeEeecCCCCeEEEEEeeCCCCEEEEEe-CCCcEEEEeCC-CCeEE--EeccCCCCeE
Q 006909          282 LLSCSMDKTVRMWQVGC-NQ--CLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVC-EKRVV--DWADVRDVIS  354 (626)
Q Consensus       282 l~s~s~d~~v~iwd~~~-~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~v~iwd~~-~~~~~--~~~~~~~~i~  354 (626)
                      +++...++.|.+||+.+ +.  .+..+.+......++++| ++++|++++ .++.|.+|++. .+.+.  ..........
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            44557789999999964 33  445555666788899999 999887664 57889999986 34332  2223344577


Q ss_pred             EEEEeeCCCEEEEEec-CCcEEEEEcCCCceeeeEEe-eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc
Q 006909          355 AICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVD-FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV  432 (626)
Q Consensus       355 ~i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~  432 (626)
                      .++++|+++++++++. ++.|.+|++........... ...     .....+++++|++...+++...++.|.+||+.+.
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-----LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-----CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            8999999999888764 78999999974332211111 111     1346778899998544456667799999997642


Q ss_pred             ee-------eeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCC
Q 006909          433 IH-------KFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  504 (626)
Q Consensus       433 ~~-------~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~  504 (626)
                      ..       ..... .......+.|+|+|++++++.. +++|.+|+++......    .    .        ...+...|
T Consensus       159 g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~----~----~--------~~~~~~~p  221 (330)
T PRK11028        159 GHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI----E----C--------VQTLDMMP  221 (330)
T ss_pred             CcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE----E----E--------EEEEecCC
Confidence            11       11111 2345678999999999988876 8999999997420000    0    0        00000000


Q ss_pred             CCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHH
Q 006909          505 IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ  584 (626)
Q Consensus       505 ~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  584 (626)
                      ..                           .........++++|||+++.++...++.|.+|++.... ....     ...
T Consensus       222 ~~---------------------------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~-~~~~-----~~~  268 (330)
T PRK11028        222 AD---------------------------FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG-SVLS-----FEG  268 (330)
T ss_pred             Cc---------------------------CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC-CeEE-----EeE
Confidence            00                           00112234577899999888776556789999885431 0000     000


Q ss_pred             hhhccCCccccccccccceEEEEecC-CceEeeeee
Q 006909          585 QQCLNNVDDVRAISATWGLVIVTAGC-DGMIKTFHN  619 (626)
Q Consensus       585 ~~~~~~~~~~~~~s~~dg~~ivt~g~-Dg~Irvw~~  619 (626)
                      ........+...+++ ||++|+++.. +++|.+|+.
T Consensus       269 ~~~~~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        269 HQPTETQPRGFNIDH-SGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             EEeccccCCceEECC-CCCEEEEEEccCCcEEEEEE
Confidence            000011122345666 7888777665 999999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.5e-16  Score=156.48  Aligned_cols=242  Identities=18%  Similarity=0.312  Sum_probs=167.3

Q ss_pred             cccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909          167 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  246 (626)
Q Consensus       167 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (626)
                      .+.++-+.++|.||+|.|+|+.|+.+|.+|++|++|-.+.|||.-.                                  
T Consensus        36 ~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~----------------------------------   81 (758)
T KOG1310|consen   36 WLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE----------------------------------   81 (758)
T ss_pred             HHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchh----------------------------------
Confidence            4566778889999999999999999999999999999999999875                                  


Q ss_pred             eecCCccccccCCCceee-ccCccceEEEEEcCC---CeEEEEeCCCcEEEeccCCC----------eeeEee-cCCCCe
Q 006909          247 VVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCN----------QCLNVF-DHHNYV  311 (626)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s~~---~~l~s~s~d~~v~iwd~~~~----------~~~~~~-~~~~~v  311 (626)
                                 .++++.+ .||...|.++.|-|.   ..+++|+.|..|+++|+...          .....+ .|...|
T Consensus        82 -----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rV  150 (758)
T KOG1310|consen   82 -----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRV  150 (758)
T ss_pred             -----------cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhh
Confidence                       3344444 489999999999873   38999999999999999741          122223 388899


Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-----------eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEc
Q 006909          312 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-----------WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKA  379 (626)
Q Consensus       312 ~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-----------~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~  379 (626)
                      ..++..|..++.|.+++.||+|+-+|++......           ....--...++.++|. ..+|++|+.|-..++||.
T Consensus       151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            9999999556999999999999999998633211           1122234678899994 568999999999999996


Q ss_pred             CCCceeeeEEeeccccccCCCCeEEEE-EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEE
Q 006909          380 SGNDLKLEKVDFHDRKKTSGNKITGIQ-FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII  458 (626)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~i~~l~-~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  458 (626)
                      +........-...  .........|+. |+|.+   +  ...+|.+..              ....++-+.|+|+|.-|+
T Consensus       231 Rr~lks~~s~~~~--~~~pp~~~~cv~yf~p~h---l--kn~~gn~~~--------------~~~~~t~vtfnpNGtElL  289 (758)
T KOG1310|consen  231 RRVLKSFRSDGTM--NTCPPKDCRCVRYFSPGH---L--KNSQGNLDR--------------YITCCTYVTFNPNGTELL  289 (758)
T ss_pred             hhhccCCCCCccc--cCCCCcccchhheecCcc---c--cCccccccc--------------ceeeeEEEEECCCCcEEE
Confidence            4322211100000  000011222232 33432   1  111111110              112356688999998776


Q ss_pred             EEeCCccEEEEECCCC
Q 006909          459 SIGDDCRVYVWNYDEL  474 (626)
Q Consensus       459 s~s~dg~I~iwd~~~~  474 (626)
                      ..-..-.|+++|+...
T Consensus       290 vs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  290 VSWGGEHVYLFDVNED  305 (758)
T ss_pred             EeeCCeEEEEEeecCC
Confidence            6655668999999876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.70  E-value=5.4e-14  Score=147.49  Aligned_cols=249  Identities=27%  Similarity=0.468  Sum_probs=189.3

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      ......+.+|...|..++|+|+++++++++. |+.+++|++..                                     
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  187 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-------------------------------------  187 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-------------------------------------
Confidence            4556677899999999999999999999886 99999999986                                     


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeE-ee-cCCCCeEEEEEeeCCCCEEE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLN-VF-DHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~~p~~~~~l~  325 (626)
                              ...+..+.+|...|.+++|+|++  .+++++.|+.|++||...+..+. .+ .|...+ ...|+| ++..++
T Consensus       188 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~  257 (466)
T COG2319         188 --------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLA  257 (466)
T ss_pred             --------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEE
Confidence                    24466677799999999999887  44455999999999988777777 34 366654 338998 778899


Q ss_pred             EEeCCCcEEEEeCCCCeE--EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          326 SGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      +++.|+.+++|++.....  .....|...+.++.|+|++..+++++.|+.+.+|+...........     ...+...+.
T Consensus       258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  332 (466)
T COG2319         258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-----LKGHEGPVS  332 (466)
T ss_pred             EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-----ecccCCceE
Confidence            999999999999986553  3335678899999999988888889999999999887766543322     122334688


Q ss_pred             EEEEcCCCCcEEEEE-eCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEE-EeCCccEEEEECCCC
Q 006909          404 GIQFSRDESQRIMIT-SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDEL  474 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s-~s~dg~I~iwd~~~~  474 (626)
                      .+.|.+++ ..++.+ ..|+.+.+|+.......... .....+..+.+++ ...++. +..++.+.+|+....
T Consensus       333 ~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  402 (466)
T COG2319         333 SLSFSPDG-SLLVSGGSDDGTIRLWDLRTGKPLKTL-EGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG  402 (466)
T ss_pred             EEEECCCC-CEEEEeecCCCcEEeeecCCCceeEEe-cCCceEEEEEECC-CCCEEEEecCCCceEEEecccC
Confidence            99994332 345554 68899999997765522222 1222388899988 544444 688999999999876

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.69  E-value=2e-14  Score=146.26  Aligned_cols=248  Identities=13%  Similarity=0.207  Sum_probs=160.6

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe-CCCcEEEEEcCC-CcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          180 HKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs-~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      +.+....++++|++++|++++ .++.|.+|++.. +...                                         
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-----------------------------------------   71 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-----------------------------------------   71 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-----------------------------------------
Confidence            345677899999999887764 578899999863 1110                                         


Q ss_pred             CCCceeeccCccceEEEEEcCCC-eEEEEe-CCCcEEEeccCCC-e---eeEeecCCCCeEEEEEeeCCCCEEEEEe-CC
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCN-Q---CLNVFDHHNYVTCVQFNPIDDNYFISGS-ID  330 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d~~v~iwd~~~~-~---~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~d  330 (626)
                        ..... ........++++|++ +|++++ .++.|.+|++.+. .   .+..+.+.....+++++| +++++++++ .+
T Consensus        72 --~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~  147 (330)
T PRK11028         72 --FAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKE  147 (330)
T ss_pred             --Eeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCC
Confidence              01111 112245689999988 555554 4889999999642 2   233333445577889999 888876554 56


Q ss_pred             CcEEEEeCCC-CeEEE------eccCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcCCC--ceeee-EEeeccccccCC
Q 006909          331 GKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGN--DLKLE-KVDFHDRKKTSG  399 (626)
Q Consensus       331 g~v~iwd~~~-~~~~~------~~~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~~--~~~~~-~~~~~~~~~~~~  399 (626)
                      +.|.+||+.+ +.+..      ..........+.|+|+|++++++.. ++.|.+|++...  ..... .+..........
T Consensus       148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~  227 (330)
T PRK11028        148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT  227 (330)
T ss_pred             CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence            8999999976 32211      1122345678999999999988876 899999999742  22111 111111100112


Q ss_pred             CCeEEEEEcCCCCcEEEEEe-CCCcEEEEeCCcc--eeeeee-cCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCC
Q 006909          400 NKITGIQFSRDESQRIMITS-EDSKLRILDGVDV--IHKFKG-LPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDE  473 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s-~dg~i~iwd~~~~--~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~  473 (626)
                      .....+.++|++ ++++++. .++.|.+|++...  ...+.. ..-......+.|+|+|++|+++.. +++|.+|+++.
T Consensus       228 ~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        228 RWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             ccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            234468999998 5666664 4789999997422  111111 111234567899999999998775 89999998863

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.69  E-value=2.3e-15  Score=137.08  Aligned_cols=258  Identities=16%  Similarity=0.246  Sum_probs=184.0

Q ss_pred             ccccccccccCcEEEEEEcCCC-CEEEEEeCC-------CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDG-RYLASGGED-------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  243 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg-~~Latgs~D-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (626)
                      .+.+.|..|.+.|+.++-+|-. +.|+|+-.+       ..+.||.+........                         
T Consensus        54 l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~-------------------------  108 (370)
T KOG1007|consen   54 LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN-------------------------  108 (370)
T ss_pred             hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc-------------------------
Confidence            3456677899999999999954 467766442       2467888765211100                         


Q ss_pred             CceeecCCccccccCCCceeec-cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee-eEee------cCCCCeEEE
Q 006909          244 HVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LNVF------DHHNYVTCV  314 (626)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~-~~~~------~~~~~v~~~  314 (626)
                                 ...-+.+..+. .+-+.|.|+.|.|++ .+++-. |..|.+|++..+.. +..+      .+....++-
T Consensus       109 -----------~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg  176 (370)
T KOG1007|consen  109 -----------SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSG  176 (370)
T ss_pred             -----------cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceeccc
Confidence                       00012233333 455699999999987 555554 88999999987665 3332      245677888


Q ss_pred             EEee-CCCCEEEEEeCCCcEEEEeCCCCeEEE--eccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEe
Q 006909          315 QFNP-IDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVD  390 (626)
Q Consensus       315 ~~~p-~~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~  390 (626)
                      +|+| .+++.+++.+ |+++..||+++.....  ...|...|..+.|+|+-+ +|++++.||.|+|||.+..+.++....
T Consensus       177 ~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~  255 (370)
T KOG1007|consen  177 AWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP  255 (370)
T ss_pred             ccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence            9999 6777777765 7999999999755433  345777899999999865 577889999999999998877665443


Q ss_pred             eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-----------------------cee------eeeecCC
Q 006909          391 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-----------------------VIH------KFKGLPK  441 (626)
Q Consensus       391 ~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-----------------------~~~------~~~~~~~  441 (626)
                      .      |...|.++.|+|.-.+++++++.|..|.+|-...                       ...      .-....|
T Consensus       256 ~------HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh  329 (370)
T KOG1007|consen  256 G------HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH  329 (370)
T ss_pred             C------CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence            3      3479999999998778999999999999995210                       000      0112347


Q ss_pred             CCCeEEEEEcCCCCEE-EEEeCCccEEEEECCC
Q 006909          442 SGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDE  473 (626)
Q Consensus       442 ~~~v~~~~~sp~g~~l-~s~s~dg~I~iwd~~~  473 (626)
                      ...|.+++||.-..++ |+-+.||.+.|=++..
T Consensus       330 EDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  330 EDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            8899999999877665 5678999999877654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.69  E-value=1.2e-15  Score=141.44  Aligned_cols=223  Identities=16%  Similarity=0.242  Sum_probs=159.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec
Q 006909          186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  265 (626)
Q Consensus       186 ~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (626)
                      -++|||+|+|+|+++.- .+.|-|..+.+                                              ++.+.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq----------------------------------------------~~qlf   45 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ----------------------------------------------LHQLF   45 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhh----------------------------------------------HHHHH
Confidence            47899999999999865 68788877622                                              12222


Q ss_pred             cCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCC-CEEEEEeCCCcEEEEeCCCC
Q 006909          266 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~-~~l~s~s~dg~v~iwd~~~~  341 (626)
                      .--..|..+.|..+.  .|.....|+.|.+|++...+-...+. ....+.++.|+| +| .+|.+...+-.|.+|.+.+.
T Consensus        46 ~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   46 LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEeccc
Confidence            224567788898776  56677888999999999888887775 667899999999 88 55666777889999999999


Q ss_pred             eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          342 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       342 ~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                      ......-.+..+..++|+|+|++.+..+.-.....+.+...+    .+.+-++.....-..+++.|+||| ..|      
T Consensus       125 ~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~----~W~ll~~f~~dT~DltgieWsPdg-~~l------  193 (447)
T KOG4497|consen  125 KGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK----AWILLKEFKLDTIDLTGIEWSPDG-NWL------  193 (447)
T ss_pred             eeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH----HHHHHHhcCCCcccccCceECCCC-cEE------
Confidence            888877778888999999999999988765332222222110    111112223334567899999997 444      


Q ss_pred             CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          422 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       422 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                         .+||.--....+.. ...-.+..++|+|.+++|+.|+.|+.++|-+-
T Consensus       194 ---aVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  194 ---AVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH  239 (447)
T ss_pred             ---EEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhce
Confidence               45663322222222 13356888999999999999999999988654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.69  E-value=6.6e-15  Score=136.23  Aligned_cols=276  Identities=14%  Similarity=0.165  Sum_probs=185.5

Q ss_pred             ceEEEEEcCCC-eEEEEeCCCcEEEeccCCC-------e-------eeEeecCCCCeEEEEEe-------eCCCCEEEEE
Q 006909          270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-------Q-------CLNVFDHHNYVTCVQFN-------PIDDNYFISG  327 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~-------~-------~~~~~~~~~~v~~~~~~-------p~~~~~l~s~  327 (626)
                      -...+.|+||| .|++-+.|..+++|++...       .       ....+.....|...+|-       | +.+++++.
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~s  129 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVS  129 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeec
Confidence            34567899999 8999999999999987321       1       11122355667777775       4 77899999


Q ss_pred             eCCCcEEEEeCCCCeEEEe---ccCC---CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee--EEeeccccccCC
Q 006909          328 SIDGKVRIWGVCEKRVVDW---ADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--KVDFHDRKKTSG  399 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~~---~~~~---~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~  399 (626)
                      +.+.-|++||.-++++...   ..|.   ....+++|+|||..|++|. ...|++||+........  ....++ +.+..
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~-k~gq~  207 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-KFGQK  207 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcc-ccccc
Confidence            9999999999999887652   2333   3456899999999998875 66999999943322222  121221 33334


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCCCCC
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPS  478 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~  478 (626)
                      +-|.+++|+|-.+..+++++....+-||.-......+...+|.+.|+.+.|.++|+.|++|+. |-.|..||++....+.
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv  287 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV  287 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence            778999999998789999999998888765444444444469999999999999999999874 7899999998753332


Q ss_pred             CCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccC---CCCcccCCCcccCCccccCCCCccccc
Q 006909          479 SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE---TAPWIRDSERFSLGSWFSNDGPCRGSA  555 (626)
Q Consensus       479 ~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~s~  555 (626)
                      ..-...+.      .....+-....|.+..|++-.   .++.+.+|+.-.   .......+...+.++++.|-=.+++++
T Consensus       288 ~~L~rhv~------~TNQRI~FDld~~~~~LasG~---tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats  358 (406)
T KOG2919|consen  288 YALERHVG------DTNQRILFDLDPKGEILASGD---TDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS  358 (406)
T ss_pred             hhhhhhcc------CccceEEEecCCCCceeeccC---CCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence            22111110      011122233344454444322   334466666643   223455566779999999996666666


Q ss_pred             CC
Q 006909          556 TW  557 (626)
Q Consensus       556 ~~  557 (626)
                      +.
T Consensus       359 sG  360 (406)
T KOG2919|consen  359 SG  360 (406)
T ss_pred             cC
Confidence            64

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=5.5e-16  Score=148.79  Aligned_cols=192  Identities=26%  Similarity=0.381  Sum_probs=149.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceee
Q 006909          185 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  264 (626)
Q Consensus       185 ~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (626)
                      .+++|+++|..|++|+.||++|||++.+                                             ...+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps---------------------------------------------~~t~l~e  182 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS---------------------------------------------MLTILEE  182 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc---------------------------------------------chhhhhh
Confidence            7899999999999999999999999776                                             2345566


Q ss_pred             ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCC---CE--EEEEeCCCcEEE
Q 006909          265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD---NY--FISGSIDGKVRI  335 (626)
Q Consensus       265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~---~~--l~s~s~dg~v~i  335 (626)
                      ..|...|.++.|+||+ .|++.+.| ..+||++.++.++....   .......+.|+. ++   .+  ++....-+.|+.
T Consensus       183 ~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~  260 (398)
T KOG0771|consen  183 IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRL  260 (398)
T ss_pred             HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeE
Confidence            7899999999999999 88899999 89999999997766553   334566778876 55   33  333344466777


Q ss_pred             EeCCC--C----eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          336 WGVCE--K----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       336 wd~~~--~----~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      ||+..  +    +..+.......|++++.+++|++++.|+.||.|.+|+....+.....      +..|...|+.+.|+|
T Consensus       261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v------k~aH~~~VT~ltF~P  334 (398)
T KOG0771|consen  261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV------KEAHLGFVTGLTFSP  334 (398)
T ss_pred             EEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee------hhhheeeeeeEEEcC
Confidence            76542  1    22233444568999999999999999999999999998876654332      345568999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCC
Q 006909          410 DESQRIMITSEDSKLRILDGV  430 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~  430 (626)
                      +. +++++.+.+.++.|..+.
T Consensus       335 ds-r~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  335 DS-RYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             Cc-CcccccccCCceeEEEEe
Confidence            95 789999999888887643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.68  E-value=2e-15  Score=148.17  Aligned_cols=189  Identities=15%  Similarity=0.316  Sum_probs=145.7

Q ss_pred             CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      +........|.+.|.+-.|+|+| -|++++.||.|++|.-...-.....+...+|.|++|.|...+.+++.+  +.+.|=
T Consensus        94 ~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IK  171 (737)
T KOG1524|consen   94 ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIK  171 (737)
T ss_pred             chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEe
Confidence            33445667899999999999999 899999999999998653322222357789999999995555555544  566666


Q ss_pred             eCC-CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          337 GVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       337 d~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      .+. ..+++++..|.+-|.++.|++..+.+++|+.|-..++||..+..+-.        ...|..+|++++|.|+  ..+
T Consensus       172 pL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~--------S~~~ey~ITSva~npd--~~~  241 (737)
T KOG1524|consen  172 PLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT--------SAAEEYAITSVAFNPE--KDY  241 (737)
T ss_pred             ecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc--------CChhccceeeeeeccc--cce
Confidence            665 35678899999999999999999999999999999999987654321        2334589999999999  466


Q ss_pred             EEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          416 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      +.++. ++++          +. .+..+.|..++||+||..++.|+..|.+.+=.
T Consensus       242 ~v~S~-nt~R----------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  242 LLWSY-NTAR----------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             eeeee-eeee----------ec-CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence            66654 2233          22 23678999999999999999999988876643

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.68  E-value=6.3e-15  Score=136.42  Aligned_cols=240  Identities=19%  Similarity=0.326  Sum_probs=181.0

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      -..+|+|.+|++|+..+|.+.....|.||.......                                          .+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~------------------------------------------w~   46 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL------------------------------------------WE   46 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC------------------------------------------ce
Confidence            457899999999999999999999999999876321                                          45


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEecc-CCCeee---EeecCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQCL---NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~-~~~~~~---~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                      +.+++..|...|+++.|+|.. .|++|+.|..-+||.. ..+.-.   ..+.++..++++.|+| .++.|++|+....|.
T Consensus        47 ~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~is  125 (361)
T KOG1523|consen   47 PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLIS  125 (361)
T ss_pred             eceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEE
Confidence            688999999999999999975 9999999999999998 444332   3346999999999999 999999999999999


Q ss_pred             EEeCCCCeEE-----EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee--------EEee---ccccccC
Q 006909          335 IWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--------KVDF---HDRKKTS  398 (626)
Q Consensus       335 iwd~~~~~~~-----~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~--------~~~~---~~~~~~~  398 (626)
                      ||-.+...--     ....++..|++++|+|++-++++|+.|+.+++|..--....-.        .+.+   .......
T Consensus       126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~  205 (361)
T KOG1523|consen  126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS  205 (361)
T ss_pred             EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence            9988765532     2356678899999999999999999999999997521110000        0000   0011134


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee-eeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      ++.+..+.|+|+| ..|+-.+.|+.+.+-|....... .......-+..++.|-.+ +.++.++.|.
T Consensus       206 ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~~c  270 (361)
T KOG1523|consen  206 GGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE-NSVVAAGYDC  270 (361)
T ss_pred             CCceeeeEeCCCC-CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC-CceeecCCCC
Confidence            5789999999998 79999999999999996644321 111112356777777544 3455555563

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.68  E-value=9.1e-15  Score=156.70  Aligned_cols=220  Identities=17%  Similarity=0.198  Sum_probs=157.4

Q ss_pred             eecCCccccccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCC-------CeeeEeec-CCCCeEEEEE
Q 006909          247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC-------NQCLNVFD-HHNYVTCVQF  316 (626)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~-------~~~~~~~~-~~~~v~~~~~  316 (626)
                      +..+..-|...+..+..++.|...|..++.++.  .+++|||.||+|++||...       .++..++. ....+.++.+
T Consensus      1027 ~~~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1027 VGSPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred             cCCCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe
Confidence            344555678888889999999999999999864  3999999999999999842       22333444 5678999999


Q ss_pred             eeCCCCEEEEEeCCCcEEEEeCCCCeE-------EEecc--CCCCeEEE-EEee-CCC-EEEEEecCCcEEEEEcCCCce
Q 006909          317 NPIDDNYFISGSIDGKVRIWGVCEKRV-------VDWAD--VRDVISAI-CYIP-DGK-GFIVGSITGTCHFYKASGNDL  384 (626)
Q Consensus       317 ~p~~~~~l~s~s~dg~v~iwd~~~~~~-------~~~~~--~~~~i~~i-~~sp-~g~-~l~~g~~dg~i~i~d~~~~~~  384 (626)
                      .+ .++.+|.++.||.|++.++.....       .....  ..+.+.++ +|.. .+. .++.++..+.|..||++....
T Consensus      1107 ~~-~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1107 CG-NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred             cc-CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence            99 999999999999999998865211       11111  12223322 3322 233 688889999999999987654


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCC---CEEEE
Q 006909          385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTG---KHIIS  459 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g---~~l~s  459 (626)
                      ... ...    ....+.|++++.+|.+ +++++|+..|.+.+||++-.  +.... +++..+++.+..+|..   ...++
T Consensus      1186 ~w~-lk~----~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1186 AWR-LKN----QLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWE-HPARAPIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred             HHh-hhc----CccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeeccc-CcccCCcceEEeeccCCCCceEEE
Confidence            332 111    1113789999999997 79999999999999998733  33333 3455788888776643   45555


Q ss_pred             Ee--CCccEEEEECCCC
Q 006909          460 IG--DDCRVYVWNYDEL  474 (626)
Q Consensus       460 ~s--~dg~I~iwd~~~~  474 (626)
                      ++  ..+.|.+|++.++
T Consensus      1259 ~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             ecccCCCceeeeecccC
Confidence            54  4688999999987

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=6.5e-15  Score=131.05  Aligned_cols=245  Identities=14%  Similarity=0.211  Sum_probs=174.1

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      ..|.+-+++|.+++|+.|..+|.|-+..+.+.......                                   .....++
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-----------------------------------~~gk~~i   55 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-----------------------------------PPGKLKI   55 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC-----------------------------------CCCCcce
Confidence            34777889999999999999999999998763211100                                   0012345


Q ss_pred             eeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCee-------eEee--cC-----CCCeEEEEEeeCCCCEEEEE
Q 006909          262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC-------LNVF--DH-----HNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~-------~~~~--~~-----~~~v~~~~~~p~~~~~l~s~  327 (626)
                      ...++|.++|+.++|. +..|++|+. |.|+-|..+....       ....  .+     -..|+++...| ..+-++++
T Consensus        56 v~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~A  132 (325)
T KOG0649|consen   56 VPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFA  132 (325)
T ss_pred             eeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEe
Confidence            5568999999999998 456777765 9999987643211       1111  12     23688999999 66666666


Q ss_pred             eCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc---ccc-cCCCCe
Q 006909          328 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKK-TSGNKI  402 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~---~~~-~~~~~i  402 (626)
                      +.|+.++.||+++|++.. +.+|.+.+.++.--.....+++|+.||++++||.++.+.... +....   ..+ ..+..|
T Consensus       133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~-ie~yk~~~~lRp~~g~wi  211 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM-IEPYKNPNLLRPDWGKWI  211 (325)
T ss_pred             cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE-eccccChhhcCcccCcee
Confidence            689999999999999765 789999999999866566899999999999999998876432 21111   111 124557


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+++-+.|   ++++ +....+.+|.++.  ...++..   .+++..+.|.  .+.+++++..+.|.-|.+...
T Consensus       212 gala~~ed---WlvC-GgGp~lslwhLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  212 GALAVNED---WLVC-GGGPKLSLWHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             EEEeccCc---eEEe-cCCCceeEEeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeeccE
Confidence            77776654   5554 4567899999874  4455544   4667778885  457888888889999998763

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=1.1e-14  Score=151.72  Aligned_cols=246  Identities=15%  Similarity=0.116  Sum_probs=173.7

Q ss_pred             CccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCee--eE-----eecCCCCeEEEEEeeCCC--CEEEEEeCCCcEEE
Q 006909          267 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC--LN-----VFDHHNYVTCVQFNPIDD--NYFISGSIDGKVRI  335 (626)
Q Consensus       267 h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~--~~-----~~~~~~~v~~~~~~p~~~--~~l~s~s~dg~v~i  335 (626)
                      -...|.+++|+|..  +++.|..+|.|.+||+..+..  ..     ...|..+++.+.|.. +.  .-|++++.||.|..
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~  319 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICS  319 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcEee
Confidence            46789999999864  889999999999999987655  22     224889999999976 43  34999999999999


Q ss_pred             EeCCCCeE------EEec-------cCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceee-eEEeeccccccCCC
Q 006909          336 WGVCEKRV------VDWA-------DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGN  400 (626)
Q Consensus       336 wd~~~~~~------~~~~-------~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~  400 (626)
                      |+++.-..      ....       .....++++.|.+ +-..+++|+.+|.|.--+-.+..... .....+.....|.+
T Consensus       320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            98764221      1111       2234688999988 55789999999998875544444333 12233434556779


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCCC-CC
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC-FP  477 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~~-~~  477 (626)
                      +|+.+.++|-+...+++++ |.+++||... .....+....+...+++++|||... .++++..||.|.+||+.... .|
T Consensus       400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P  478 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP  478 (555)
T ss_pred             ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence            9999999999866666666 9999999966 4444444444667799999999875 45666779999999997651 12


Q ss_pred             CCC--ccCCccceeeeccCCcEEEEecCCCCcccccccC
Q 006909          478 SSK--QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  514 (626)
Q Consensus       478 ~~~--~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~  514 (626)
                      ...  ....+..+..+++.|..++++-..+...++.+..
T Consensus       479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  479 VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            111  1244555666777788888876666556555543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.66  E-value=4.4e-15  Score=135.32  Aligned_cols=219  Identities=18%  Similarity=0.273  Sum_probs=162.6

Q ss_pred             ccccccc-cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          172 YTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       172 ~~~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      .+...|. .|-+.|.|+.|.|++..||+-. |..|.+|++.+......                                
T Consensus       113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~va--------------------------------  159 (370)
T KOG1007|consen  113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVA--------------------------------  159 (370)
T ss_pred             hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhe--------------------------------
Confidence            3334443 5667999999999999999876 78899999987432110                                


Q ss_pred             CccccccCCCceeeccCccceEEEEEcC--CCeEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEE
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s  326 (626)
                             .-+...-.+|....++-+|+|  ++.-+....|+++..||+++..+...+.  |...|..+.|+|....+|++
T Consensus       160 -------ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt  232 (370)
T KOG1007|consen  160 -------EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVT  232 (370)
T ss_pred             -------eecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEE
Confidence                   000111123667778889998  4555556678999999999988888774  88899999999966778999


Q ss_pred             EeCCCcEEEEeCCCC--eEEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeee----------------
Q 006909          327 GSIDGKVRIWGVCEK--RVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE----------------  387 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~----------------  387 (626)
                      |+.||.|++||.+.-  .+....+|...|.++.|+|. .+++++|+.|..+.+|....-.....                
T Consensus       233 ~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse  312 (370)
T KOG1007|consen  233 CGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE  312 (370)
T ss_pred             cCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhH
Confidence            999999999999864  35567899999999999995 56788899999999987643221100                


Q ss_pred             -E-Eeecc----ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 006909          388 -K-VDFHD----RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  430 (626)
Q Consensus       388 -~-~~~~~----~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~  430 (626)
                       . ..+..    ....|...|.+++|+.-.+-.+++-+.||.+.|=.+.
T Consensus       313 er~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  313 ERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             HhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence             0 00111    2334678999999998888889999999999886643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.66  E-value=4.1e-14  Score=151.75  Aligned_cols=263  Identities=11%  Similarity=0.173  Sum_probs=176.4

Q ss_pred             ccccccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      .-.+...|..|...|..++.++.. .+++|||.||+|++|+.........                              
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~------------------------------ 1086 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG------------------------------ 1086 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc------------------------------
Confidence            344566788899999999988765 8999999999999999876221000                              


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe-------eeEeec--CCC-CeEEEEEe
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVFD--HHN-YVTCVQFN  317 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~-------~~~~~~--~~~-~v~~~~~~  317 (626)
                              ......++..-...+.++...+.+ .+|.++.||.|++.+++...       +.+...  ..+ .|..-+|.
T Consensus      1087 --------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~ 1158 (1431)
T KOG1240|consen 1087 --------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFT 1158 (1431)
T ss_pred             --------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccc
Confidence                    011123333346778888888776 89999999999999987521       111111  222 33344454


Q ss_pred             eCCCC-EEEEEeCCCcEEEEeCCCCeEE---EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc
Q 006909          318 PIDDN-YFISGSIDGKVRIWGVCEKRVV---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  393 (626)
Q Consensus       318 p~~~~-~l~s~s~dg~v~iwd~~~~~~~---~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~  393 (626)
                      ..... .++.+..-+.|..||++.....   +.....+.|++++.+|.+.++++|+..|.+.+||++-.... ..+....
T Consensus      1159 ~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i-~sw~~P~ 1237 (1431)
T KOG1240|consen 1159 AIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI-LSWEHPA 1237 (1431)
T ss_pred             ccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee-ecccCcc
Confidence            43444 6777888899999999875533   33445678999999999999999999999999999865443 2333332


Q ss_pred             ccccCCCCeEEEEEcCCCC--cEEE-EEe-CCCcEEEEeCCcceeeeeec-------------------CCCCCeEEEEE
Q 006909          394 RKKTSGNKITGIQFSRDES--QRIM-ITS-EDSKLRILDGVDVIHKFKGL-------------------PKSGSQMSASF  450 (626)
Q Consensus       394 ~~~~~~~~i~~l~~s~~~~--~~l~-~~s-~dg~i~iwd~~~~~~~~~~~-------------------~~~~~v~~~~~  450 (626)
                      +     .+|+.+..+|-.+  ...+ +++ ..+.|.+|+..+........                   ++.-.....++
T Consensus      1238 ~-----~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~ 1312 (1431)
T KOG1240|consen 1238 R-----APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV 1312 (1431)
T ss_pred             c-----CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeec
Confidence            2     6777777665432  3444 444 57899999976443322211                   11112233444


Q ss_pred             cCCCCEEEEEeCCccEEEEECCCCCC
Q 006909          451 TTTGKHIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       451 sp~g~~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      ..-+.++++|+.|..|+.||......
T Consensus      1313 ~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1313 CEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             ccCCceeeecCCccceeeccCCCccc
Confidence            45567899999999999999987643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=9.7e-15  Score=144.79  Aligned_cols=295  Identities=17%  Similarity=0.189  Sum_probs=194.3

Q ss_pred             ccccccccccccccccccccCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcceeeeecCCCC-CccCCCCCeeeecC
Q 006909          162 KKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGG-FGSNAKEGKIKFGK  239 (626)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-atgs~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  239 (626)
                      ++..+.+....+.|.| +|...-+.|..+|||+|+ |||..--.|++||+.+............. ......++      
T Consensus        33 kkd~~~~~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD------  105 (703)
T KOG2321|consen   33 KKDVDYRQRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDD------  105 (703)
T ss_pred             hhchHHHHHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccc------
Confidence            3334444555666666 689999999999999965 56666778999999875443221111100 00000000      


Q ss_pred             CCCCCceeecCCcccccc--CCCceeeccCccceEEEEEc-CCCeEEEEeCCCcEEEeccCCCeeeEeecC-CCCeEEEE
Q 006909          240 KKSSHVPVVIPDEVFQIE--ESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQ  315 (626)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~V~~l~~s-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~  315 (626)
                        -+..+..-.+....+.  ......+ --...-.+++++ |+--|+.++....|.-++++.|+.+..|.. ...++++.
T Consensus       106 --~SK~v~L~~DR~IefHak~G~hy~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~  182 (703)
T KOG2321|consen  106 --YSKSVFLQNDRTIEFHAKYGRHYRT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS  182 (703)
T ss_pred             --hhhheEeecCceeeehhhcCeeeee-ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence              0000000000000000  0000000 001223455555 333455555666799999999999999974 47999999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc-------CC-----CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc
Q 006909          316 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-------VR-----DVISAICYIPDGKGFIVGSITGTCHFYKASGND  383 (626)
Q Consensus       316 ~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-------~~-----~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~  383 (626)
                      .++ ...+|++|+.+|.|..||.+....+....       +.     ..|+++.|+.+|-.+++|+.+|.+.|||++...
T Consensus       183 in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~  261 (703)
T KOG2321|consen  183 INE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK  261 (703)
T ss_pred             ecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence            999 88899999999999999999876544222       22     239999999999999999999999999999877


Q ss_pred             eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                      .....-.      ....+|..+.|.+.+.+--+++.....++|||-.+....... .....++.+|+-|++.+++++-++
T Consensus       262 pl~~kdh------~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asi-Ept~~lND~C~~p~sGm~f~Ane~  334 (703)
T KOG2321|consen  262 PLLVKDH------GYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASI-EPTSDLNDFCFVPGSGMFFTANES  334 (703)
T ss_pred             ceeeccc------CCccceeeecccccCCCceEEecchHHhhhcccccCCceeec-cccCCcCceeeecCCceEEEecCC
Confidence            6543221      123789999998775455566666789999996554433333 245669999999999999999999


Q ss_pred             ccEEEEECCCC
Q 006909          464 CRVYVWNYDEL  474 (626)
Q Consensus       464 g~I~iwd~~~~  474 (626)
                      +.+..|-+...
T Consensus       335 ~~m~~yyiP~L  345 (703)
T KOG2321|consen  335 SKMHTYYIPSL  345 (703)
T ss_pred             CcceeEEcccc
Confidence            98888877654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.7e-14  Score=132.60  Aligned_cols=273  Identities=17%  Similarity=0.216  Sum_probs=182.3

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      .-.+..++|++.-..+|++..|-+|+||+-...                                             . 
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst---------------------------------------------~-  131 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST---------------------------------------------C-  131 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCC---------------------------------------------C-
Confidence            345788999987778899999999999987641                                             1 


Q ss_pred             ceeec-cCccceEEEEEcCCC--eEEEEeCCCcEEEeccCC----Ce--------eeEeec--CCCCeEEEEEeeCCCCE
Q 006909          261 LQELH-GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC----NQ--------CLNVFD--HHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       261 ~~~~~-~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~----~~--------~~~~~~--~~~~v~~~~~~p~~~~~  323 (626)
                      ...++ .....|+|++|-|.+  .|+.|+.. -|.+|....    +.        +...++  .+.+|++++|++ ++..
T Consensus       132 pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~  209 (445)
T KOG2139|consen  132 PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTI  209 (445)
T ss_pred             CceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCE
Confidence            11121 235689999999965  67777765 499996532    11        112222  336899999999 9999


Q ss_pred             EEEEeCC-CcEEEEeCCCCeEEEec-cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          324 FISGSID-GKVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       324 l~s~s~d-g~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +++++.+ ..|.|||..++..+.+. ...+.++-+.|+|||.+|.+++-|+..++|.....-. .+.+...      .+.
T Consensus       210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-~erw~lg------sgr  282 (445)
T KOG2139|consen  210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-KERWILG------SGR  282 (445)
T ss_pred             EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce-ecceecc------CCc
Confidence            9998864 67999999998877766 4557788999999999999999999999996543222 1122221      258


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEe--CCcce--------eee--------eecC----CCCCeEEEEEcCCCCEEEE
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILD--GVDVI--------HKF--------KGLP----KSGSQMSASFTTTGKHIIS  459 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd--~~~~~--------~~~--------~~~~----~~~~v~~~~~sp~g~~l~s  459 (626)
                      |...+|+|+|..+|++.+....++-..  .+...        ...        ....    -.+.+.+++|.|.|.+|++
T Consensus       283 vqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav  362 (445)
T KOG2139|consen  283 VQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV  362 (445)
T ss_pred             eeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence            999999999976677766655444322  11000        000        0001    2457789999999999998


Q ss_pred             EeCC--------ccEEEEECCCCCCCC-C--C-ccCCccceeeecc---CCcEEEEecCCCCcc
Q 006909          460 IGDD--------CRVYVWNYDELCFPS-S--K-QKNSVRSCEHFFS---EGVSVAVQWPGIGTE  508 (626)
Q Consensus       460 ~s~d--------g~I~iwd~~~~~~~~-~--~-~~~~~~~~~~~~~---~g~~~av~~s~~~~~  508 (626)
                      .-..        ..|.+||........ .  . -.......+.|+|   +|..+.++|+-+...
T Consensus       363 ~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq  426 (445)
T KOG2139|consen  363 IFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQ  426 (445)
T ss_pred             EEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceE
Confidence            6543        346777776541110 0  0 1111133445554   788999999876544

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.64  E-value=3.5e-15  Score=149.15  Aligned_cols=207  Identities=18%  Similarity=0.296  Sum_probs=155.4

Q ss_pred             ccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          180 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       180 H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      ....|+.+.|.| |...||.+++||.|++|.+..+...                                      ....
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--------------------------------------e~~~  667 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP--------------------------------------ENEM  667 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCC--------------------------------------cccC
Confidence            456799999999 6679999999999999999864221                                      1125


Q ss_pred             CCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      .+...+.+|...|+.+.|+|=  +.|+++++|.+|++||+.++.....+ +|.+.|..++|+| +|+.+++.+.||+|++
T Consensus       668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRV  746 (1012)
T ss_pred             CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEE
Confidence            677889999999999999984  58999999999999999998876666 6999999999999 9999999999999999


Q ss_pred             EeCCCCeEEEecc---CCCCeEEEEEeeCCCEEEEEecCC----cEEEEEcCCCce-eeeEEeeccccccCCCCeEEEEE
Q 006909          336 WGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       336 wd~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~~g~~dg----~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~  407 (626)
                      |..++++.-...+   ....--.|.|.-+|+++++.+.|.    .|.+||..+-.. .+....+...     ..+.--.+
T Consensus       747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva-----ps~LvP~Y  821 (1012)
T KOG1445|consen  747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA-----PSPLVPHY  821 (1012)
T ss_pred             eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc-----Cccccccc
Confidence            9988765332111   123344677888999999887764    688888765442 1111111100     11222235


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCC
Q 006909          408 SRDESQRIMITSEDSKLRILDGV  430 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~  430 (626)
                      .+|.+.++++|-.|..|.+|.+.
T Consensus       822 D~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  822 DYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             cCCCceEEEecCCCceEEEEEec
Confidence            56665788899999999999864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=1.8e-13  Score=129.25  Aligned_cols=235  Identities=11%  Similarity=0.177  Sum_probs=174.0

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      ...+..+.|..+...|..|+.|| -++|+......                                             
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k---------------------------------------------   38 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK---------------------------------------------   38 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHH---------------------------------------------
Confidence            44678888999999999999999 68888765211                                             


Q ss_pred             ceeeccCccceEEEEEcCCCeEEEEeCC--CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          261 LQELHGHKGDVLDLAWSNSNYLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~~l~s~s~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                      ..........|.-+-|+. .+++..+.+  ..+++.++..+..+..+....+|.++.++.   +.|+++-. ..|+|||+
T Consensus        39 ~~~~~~~~~~IvEmLFSS-SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr---~RLvV~Le-e~IyIydI  113 (391)
T KOG2110|consen   39 CFSKDTEGVSIVEMLFSS-SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR---KRLVVCLE-ESIYIYDI  113 (391)
T ss_pred             hhcccCCCeEEEEeeccc-ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc---ceEEEEEc-ccEEEEec
Confidence            000011123455556654 344444434  459999999999999998999999999964   55665554 44999999


Q ss_pred             CCCeEEEec----cCCCCeEEEEEeeCCCEEEEE--ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          339 CEKRVVDWA----DVRDVISAICYIPDGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       339 ~~~~~~~~~----~~~~~i~~i~~sp~g~~l~~g--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      ++.+++...    .+...+.++++++.+.+++.-  ...|.|.+||+.+-+... .+.      .|.+.+.+++|+++| 
T Consensus       114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~-~I~------aH~~~lAalafs~~G-  185 (391)
T KOG2110|consen  114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN-TIN------AHKGPLAALAFSPDG-  185 (391)
T ss_pred             ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee-EEE------ecCCceeEEEECCCC-
Confidence            998877633    445567777777777788863  346899999998765432 333      345899999999998 


Q ss_pred             cEEEEEeCCCc-EEEEeCCcceeeeeecC--CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          413 QRIMITSEDSK-LRILDGVDVIHKFKGLP--KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       413 ~~l~~~s~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+||++++.|+ |||+.+.+....++...  ....|.+++|+|++++|++.|..++|+||.++..
T Consensus       186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            79999999986 68999887666555432  2456889999999999999999999999999875

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=4.8e-13  Score=124.09  Aligned_cols=277  Identities=13%  Similarity=0.238  Sum_probs=180.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909          184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  263 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (626)
                      ..+++|+.|...++.|.++| .+||+++..+...                                           ...
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~-------------------------------------------~r~   43 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA-------------------------------------------SRQ   43 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhh-------------------------------------------hhc
Confidence            44599999999999998888 8999987522110                                           000


Q ss_pred             eccCccceEEEEEcCCCeE-EEEeCC------CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          264 LHGHKGDVLDLAWSNSNYL-LSCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~~l-~s~s~d------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      +..-.-.+..+-|- .++| +.|+.+      ..|.|||=....++..+....+|.++.+.+   +.+++.- .+.|+||
T Consensus        44 ~~~~G~~~veMLfR-~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~Vy  118 (346)
T KOG2111|consen   44 FIDGGFKIVEMLFR-SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVY  118 (346)
T ss_pred             cccCchhhhhHhhh-hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEE
Confidence            00000111122221 2322 233333      469999988889999999999999999975   5555554 5789999


Q ss_pred             eCCC-CeEEE---eccCCCCeEEEEEeeCCCEEEE-EecCCcEEEEEcCCCcee-eeEEeeccccccCCCCeEEEEEcCC
Q 006909          337 GVCE-KRVVD---WADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       337 d~~~-~~~~~---~~~~~~~i~~i~~sp~g~~l~~-g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      .... -+...   .........+++-+.+..+||. |..-|.|+|-|+...... ...+      .+|...|.|++++.+
T Consensus       119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I------~AH~s~Iacv~Ln~~  192 (346)
T KOG2111|consen  119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII------NAHDSDIACVALNLQ  192 (346)
T ss_pred             EcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE------EcccCceeEEEEcCC
Confidence            8863 22222   2222333433333223334444 556799999999766542 2223      344589999999999


Q ss_pred             CCcEEEEEeCCCc-EEEEeCCccee--eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC--------
Q 006909          411 ESQRIMITSEDSK-LRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--------  479 (626)
Q Consensus       411 ~~~~l~~~s~dg~-i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~--------  479 (626)
                      | .++|++|..|+ |||||..+...  .++.-...+.|.+++|||++.+|+++|+-|+|+||.+........        
T Consensus       193 G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~  271 (346)
T KOG2111|consen  193 G-TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFK  271 (346)
T ss_pred             c-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccc
Confidence            8 79999999996 79999875443  444334567899999999999999999999999999986422211        


Q ss_pred             -----CccCCccceeeec-cCCcEEEEecCCCCcccccccCCC
Q 006909          480 -----KQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSS  516 (626)
Q Consensus       480 -----~~~~~~~~~~~~~-~~g~~~av~~s~~~~~l~~~~~~~  516 (626)
                           +...+..+...|+ |.|....++|..+...+..++.|+
T Consensus       272 ~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dg  314 (346)
T KOG2111|consen  272 RLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADG  314 (346)
T ss_pred             ccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCC
Confidence                 1112234455554 567777888887755444444443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=3.3e-14  Score=149.18  Aligned_cols=198  Identities=17%  Similarity=0.146  Sum_probs=138.1

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe-CCCcEEE
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRI  335 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~v~i  335 (626)
                      .+.+..|...+...+|+|+| .|+.++.+   ..|++||+.+++.............++|+| +++.|+.++ .+|.+.|
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~I  274 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNI  274 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEE
Confidence            34566788889999999998 67766543   369999998876543333333445789999 999888764 6776554


Q ss_pred             --EeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          336 --WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       336 --wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                        ||+.++....+..+...+....|+|||+.|+..+ .+|...+|++.........+   ..    ..  ....|+|+| 
T Consensus       275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~----~~--~~~~~SpDG-  344 (429)
T PRK01742        275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GG----RG--YSAQISADG-  344 (429)
T ss_pred             EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cC----CC--CCccCCCCC-
Confidence              5777787777777777888999999999877655 57888888875433222221   11    12  357899998 


Q ss_pred             cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          413 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      ++|+.++.++ +.+||+.+.........  .....+.|+|+|++|+.++.++.+.+|.+.
T Consensus       345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        345 KTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             CEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            5777666654 56689765432221111  123567899999999999999988888764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=4.2e-15  Score=147.40  Aligned_cols=225  Identities=19%  Similarity=0.237  Sum_probs=159.6

Q ss_pred             cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      ..+....+|++|.++|.|+++++++.++.+||.||+|+.|++....-      ++...                      
T Consensus       332 ~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d------p~ds~----------------------  383 (577)
T KOG0642|consen  332 KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD------PDDSY----------------------  383 (577)
T ss_pred             cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC------ccccc----------------------
Confidence            34455678899999999999999999999999999999998763100      00000                      


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEE
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYF  324 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l  324 (626)
                            + .......+.||++.|+.+++|+.. .|++|+.||+|++|+...... .+|.   ..+....+.+-.....+.
T Consensus       384 ------d-p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~  455 (577)
T KOG0642|consen  384 ------D-PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHS  455 (577)
T ss_pred             ------C-cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhh
Confidence                  0 012346788999999999999865 899999999999999977666 4453   334556666654122333


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEecc--------CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909          325 ISGSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  396 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~~~~~~~~~--------~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  396 (626)
                      ++...-+.--++++.......+..        ....+.-+.++|.+...+++..|+.|+++|..++......       .
T Consensus       456 ~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~-------~  528 (577)
T KOG0642|consen  456 LASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM-------V  528 (577)
T ss_pred             hhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe-------e
Confidence            333333333344444333222221        1245778889999999999999999999999988765432       2


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeee
Q 006909          397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK  437 (626)
Q Consensus       397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~  437 (626)
                      .|...++++++.|+| -+|++++.|+.+++|.+........
T Consensus       529 a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~~~~e  568 (577)
T KOG0642|consen  529 AHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKTCVLE  568 (577)
T ss_pred             eccceecceeecCCC-ceEEeecCCceeehhhccchheeec
Confidence            334789999999998 6999999999999998765444433

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=1.1e-13  Score=128.28  Aligned_cols=207  Identities=15%  Similarity=0.205  Sum_probs=162.6

Q ss_pred             eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe---eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~---~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      .+.--..+|+|.+|++++ .++.+.....|.||.....+   ...++ .|...|+++.|+| ..+.|++++.|..-++|.
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence            344456799999999998 88888888899999987665   34445 3889999999999 899999999999999999


Q ss_pred             CCCCe----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          338 VCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       338 ~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      ...+.    ...+..+...++++.|+|.++.|++|+....|.+|-++...--..   ....++.....|+++.|+|++ -
T Consensus        84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV---sKhikkPirStv~sldWhpnn-V  159 (361)
T KOG1523|consen   84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV---SKHIKKPIRSTVTSLDWHPNN-V  159 (361)
T ss_pred             cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh---hhhhCCccccceeeeeccCCc-c
Confidence            84432    345678889999999999999999999999999998765432110   001122334789999999997 7


Q ss_pred             EEEEEeCCCcEEEEeCC-----c-------------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          414 RIMITSEDSKLRILDGV-----D-------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++++|+.|+..+|+..-     +             .....+.....+.+..+.|+|+|..|+-.+.|.++.+=|....
T Consensus       160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            89999999999999621     0             0011111135678999999999999999999999999998876

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=4e-15  Score=146.53  Aligned_cols=241  Identities=18%  Similarity=0.240  Sum_probs=172.0

Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeCC-CCEEEEEeCCCcEEE
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPID-DNYFISGSIDGKVRI  335 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~~-~~~l~s~s~dg~v~i  335 (626)
                      ...++.||++.|+++.|+.+| +|++||.|-.+.|||.-..+.+..+  +|...|.++.|-|.. ..++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            356789999999999999998 9999999999999999988888877  499999999999954 457889999999999


Q ss_pred             EeCCCCe-----------EEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccc---cccCCC
Q 006909          336 WGVCEKR-----------VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTSGN  400 (626)
Q Consensus       336 wd~~~~~-----------~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~  400 (626)
                      +|+...+           ...+..|...|..++..|++ +.+.+++.||+|+-||++....-......+..   ....--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            9997421           22356778889999999988 88999999999999999864321110000000   000013


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCC-----CeEEE-EEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG-----SQMSA-SFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~-~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ...++..+|..+.+|++|+.|-..++||.+.....+.......     ...++ .|+|.+-    ...+|.+.       
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~~-------  270 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNLD-------  270 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cCcccccc-------
Confidence            4678999999989999999999999999765554444311100     00111 1233221    11112111       


Q ss_pred             CCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCc
Q 006909          475 CFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL  517 (626)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~  517 (626)
                            +.-...+.+.|+|+|.-+.+.|+....+++.+..+..
T Consensus       271 ------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  271 ------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             ------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence                  1112345678999999999999999999998877643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=7.2e-14  Score=147.66  Aligned_cols=255  Identities=21%  Similarity=0.297  Sum_probs=176.4

Q ss_pred             cCcEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          181 KGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       181 ~~~V~~l~fsp--dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      ...|+.|.+-.  |..+|++|+.||.|+||+--....                 ++..         .+..        .
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~-----------------~~~e---------LVTa--------w 1154 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW-----------------KKPE---------LVTA--------W 1154 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEeccccccc-----------------CCce---------eEEe--------e
Confidence            35688888754  345899999999999997432110                 0000         0000        0


Q ss_pred             CCcee-eccCccceEEEEEcC-CCeEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          259 SPLQE-LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       259 ~~~~~-~~~h~~~V~~l~~s~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                      ..+.. +.+-.+.=.-+.|.. .|+|++++.-..|+|||....++...+.  ....|+++.-+-..++.++.|..||.|+
T Consensus      1155 ~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvR 1234 (1387)
T KOG1517|consen 1155 SSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVR 1234 (1387)
T ss_pred             ccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceE
Confidence            00111 111111114456764 4688888878999999999888887764  5557888876665789999999999999


Q ss_pred             EEeCCCCe----EEEeccCCCC--eEEEEEeeCCCE-EEEEecCCcEEEEEcCCCcee-eeEEeeccccccCCCCeEEEE
Q 006909          335 IWGVCEKR----VVDWADVRDV--ISAICYIPDGKG-FIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       335 iwd~~~~~----~~~~~~~~~~--i~~i~~sp~g~~-l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +||.+...    +..+..|...  |..+.+.+.|-. |++|+.+|.|++||++..... ...+..+..   .++..+++.
T Consensus      1235 vyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~---yGs~lTal~ 1311 (1387)
T KOG1517|consen 1235 VYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE---YGSALTALT 1311 (1387)
T ss_pred             EeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc---cCccceeee
Confidence            99987633    3446667666  999999997765 999999999999999985221 112222211   123599999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCC-cceeeeee-----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          407 FSRDESQRIMITSEDSKLRILDGV-DVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~-----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+++. ..+++|+. +.|+||++. +....++.     ....+.+.+++|+|..-++|+|+.|..|.||.....
T Consensus      1312 VH~ha-piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1312 VHEHA-PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             eccCC-CeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            99986 58888887 999999965 22222221     113457799999999999999999999999988764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=1.3e-13  Score=131.17  Aligned_cols=221  Identities=14%  Similarity=0.092  Sum_probs=169.5

Q ss_pred             eeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCe----eeEeecCCCCeEEEEEeeCCCCEEEEEeCC--CcEEEE
Q 006909          263 ELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGSID--GKVRIW  336 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d--g~v~iw  336 (626)
                      .....+.+|..++.. ++.|++|-.+|.+.+|....+.    .+..+.....+..+.-+|....++++|+..  ..+.+|
T Consensus       100 ~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             ccccccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeee
Confidence            334456677777653 5789999999999999987543    233344456677888888677888889988  889999


Q ss_pred             eCCCCeEEEe-c-------c--CCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909          337 GVCEKRVVDW-A-------D--VRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       337 d~~~~~~~~~-~-------~--~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      |+.+.+.+-. .       +  .+-.++++.|-+.  ...|++++.-+.+++||.+.++.++..+.+..      .++++
T Consensus       179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E------~~is~  252 (412)
T KOG3881|consen  179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE------NPISS  252 (412)
T ss_pred             ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc------Cccee
Confidence            9988743321 1       1  1234778889887  88999999999999999998888887777664      79999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909          405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  483 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  483 (626)
                      +...|++ +++++|..-+.+..+|++....... .....+.+.++..+|.+++|+++|-|+.|+|+|+++.........+
T Consensus       253 ~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK  331 (412)
T KOG3881|consen  253 TGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK  331 (412)
T ss_pred             eeecCCC-cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh
Confidence            9999998 7999999999999999986544333 2346789999999999999999999999999999986444444444


Q ss_pred             Cccceeee
Q 006909          484 SVRSCEHF  491 (626)
Q Consensus       484 ~~~~~~~~  491 (626)
                      ...+++.+
T Consensus       332 s~lt~il~  339 (412)
T KOG3881|consen  332 SRLTFILL  339 (412)
T ss_pred             ccccEEEe
Confidence            44444333

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.61  E-value=2.3e-14  Score=140.85  Aligned_cols=261  Identities=17%  Similarity=0.199  Sum_probs=171.2

Q ss_pred             cCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCe-EEEEEee------CCCCEEEEEeCCCcEEEEe
Q 006909          266 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYV-TCVQFNP------IDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v-~~~~~~p------~~~~~l~s~s~dg~v~iwd  337 (626)
                      .|...|.++.|+.+.-++.++.|..+.+|.--+........ ....+ +.+..-+      .....|+.++.||.+.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            46677789999887766666666666666543333222221 11111 1111111      1345788889999999987


Q ss_pred             CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       338 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      -...-......|.+.+.+-.|+|+|..|++++.||.|++|.-.+.-...        ......+|.|++|.|+....+++
T Consensus        92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt--------l~Q~~~~v~c~~W~p~S~~vl~c  163 (737)
T KOG1524|consen   92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST--------VVQNEESIRCARWAPNSNSIVFC  163 (737)
T ss_pred             ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHH--------HhhcCceeEEEEECCCCCceEEe
Confidence            6554445577899999999999999999999999999999876542211        11123789999999997655555


Q ss_pred             EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcE
Q 006909          418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS  497 (626)
Q Consensus       418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~  497 (626)
                      .+  +.+.|=.+......++-..|.+-|.++.|++..+.|++|++|-..+|||-.+.........           +-.+
T Consensus       164 ~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~-----------ey~I  230 (737)
T KOG1524|consen  164 QG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAE-----------EYAI  230 (737)
T ss_pred             cC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChh-----------ccce
Confidence            44  4555545554445555556999999999999999999999999999999876532222222           2345


Q ss_pred             EEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCC
Q 006909          498 VAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKL  562 (626)
Q Consensus       498 ~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i  562 (626)
                      ..++|+|+..  +.+.+-..            ..+..+....+..++||+||..++.++. .|.+
T Consensus       231 TSva~npd~~--~~v~S~nt------------~R~~~p~~GSifnlsWS~DGTQ~a~gt~-~G~v  280 (737)
T KOG1524|consen  231 TSVAFNPEKD--YLLWSYNT------------ARFSSPRVGSIFNLSWSADGTQATCGTS-TGQL  280 (737)
T ss_pred             eeeeeccccc--eeeeeeee------------eeecCCCccceEEEEEcCCCceeecccc-CceE
Confidence            6677777722  22222110            0012333445888999999998877766 3443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=5.8e-14  Score=147.37  Aligned_cols=206  Identities=14%  Similarity=0.118  Sum_probs=133.5

Q ss_pred             CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC---CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCE
Q 006909          288 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG  364 (626)
Q Consensus       288 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~  364 (626)
                      +..|.+||...........+...+...+|+| +++.|+.++.+   ..|++||+.+++...+.........++|+|||+.
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            4789999997665444446778899999999 99999888754   3699999998765544444445567899999998


Q ss_pred             EEEEe-cCCcEEEE--EcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeec
Q 006909          365 FIVGS-ITGTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGL  439 (626)
Q Consensus       365 l~~g~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~  439 (626)
                      |+.+. .+|.+.||  |+.++..  ..+..      +...+....|+|||..+++++..++...||++.  .......  
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~--~~lt~------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--  331 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTP--SQLTS------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--  331 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCe--Eeecc------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--
Confidence            88765 67876665  5544432  22211      124577899999985445555567888888753  2211111  


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcc
Q 006909          440 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTE  508 (626)
Q Consensus       440 ~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~  508 (626)
                      .+..  ....|+|+|++|+.++.++ +.+||+.++......... ......|+|+|..++.+...++..
T Consensus       332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g~~~  396 (429)
T PRK01742        332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF-LDESPSISPNGIMIIYSSTQGLGK  396 (429)
T ss_pred             cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC-CCCCceECCCCCEEEEEEcCCCce
Confidence            1222  3578999999999887754 666999876322111111 112335666666665554444433

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.6e-14  Score=138.82  Aligned_cols=197  Identities=17%  Similarity=0.202  Sum_probs=150.0

Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc-
Q 006909          272 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-  348 (626)
Q Consensus       272 ~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-  348 (626)
                      ..++|+++| .|++++.||++|||+..+...+... .|...|.++.|+| ++..|++.+.| ..+||+++++..+.... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            788999986 9999999999999997666555444 6999999999999 99999999999 89999999986554333 


Q ss_pred             --CCCCeEEEEEeeCC-----CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          349 --VRDVISAICYIPDG-----KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       349 --~~~~i~~i~~sp~g-----~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                        .......+.|+.++     ..++.....+.|+.|++...... ...... ........|++++.+++| ++++.|+.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~-~~~~~~~siSsl~VS~dG-kf~AlGT~d  302 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLR-KKIKRFKSISSLAVSDDG-KFLALGTMD  302 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchh-hhhhccCcceeEEEcCCC-cEEEEeccC
Confidence              33446677788776     23333444567777776543331 100000 011122589999999998 899999999


Q ss_pred             CcEEEEeCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          422 SKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       422 g~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      |.|-|++..+....+. ...|...|+.+.|+|+.+++++.+.|.++.|..+.-
T Consensus       303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999876554433 355888999999999999999999999999988764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.60  E-value=9.5e-14  Score=136.88  Aligned_cols=189  Identities=19%  Similarity=0.262  Sum_probs=148.1

Q ss_pred             CCC-eEEEEeCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----------
Q 006909          278 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----------  340 (626)
Q Consensus       278 ~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-----------  340 (626)
                      |.+ -|+.+-.-|.|.+.|.......+.+.     ....|+|+.|-|.+...|+.+-.+|.+++||..-           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            445 67788888899998887644444342     4568999999998888899999999999997631           


Q ss_pred             ---Ce---------------EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          341 ---KR---------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       341 ---~~---------------~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                         +.               +..+.-....|+.++|+|||++||+.+.||.++|||..+..+...       .+.--+..
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~-------mkSYFGGL  335 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV-------MKSYFGGL  335 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH-------HHhhccce
Confidence               00               111222345788999999999999999999999999987665322       12223689


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC------------------------------
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT------------------------------  452 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp------------------------------  452 (626)
                      .|++|+||| ++|++|++|.-|.||...+....-.+++|..+|..++|.|                              
T Consensus       336 LCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~  414 (636)
T KOG2394|consen  336 LCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN  414 (636)
T ss_pred             EEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence            999999998 8999999999999999988888888899999999999983                              


Q ss_pred             -C----C-------------CEEEEEeCCccEEEEECCCC
Q 006909          453 -T----G-------------KHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       453 -~----g-------------~~l~s~s~dg~I~iwd~~~~  474 (626)
                       +    +             -.+.+.+.|-.+.+||+...
T Consensus       415 ~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  415 GTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED  454 (636)
T ss_pred             CCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence             0    0             13667889999999999865

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2.2e-12  Score=135.16  Aligned_cols=200  Identities=14%  Similarity=0.182  Sum_probs=137.2

Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEe---CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCCC--cEE
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCS---MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDG--KVR  334 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s---~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg--~v~  334 (626)
                      +.+..+...+...+|+|+| .|+..+   .+..|.+|++.+++..........+..++|+| +++.|+.. +.+|  .|+
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEE
Confidence            4445567789999999998 566443   24579999998887655444445566789999 99888765 4444  589


Q ss_pred             EEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-CcEEEE--EcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          335 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       335 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      +||+.+++...+......+....|+|+|+.|+..+.+ +...+|  |+.++..  ..+...      ........|+|||
T Consensus       271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~lt~~------~~~~~~~~~SpDG  342 (429)
T PRK03629        271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRITWE------GSQNQDADVSSDG  342 (429)
T ss_pred             EEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEeecC------CCCccCEEECCCC
Confidence            9999998888777777778899999999988877654 444555  5555432  222222      1345678899998


Q ss_pred             CcEEEEEeC-C--CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEeCCcc---EEEEECCCC
Q 006909          412 SQRIMITSE-D--SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR---VYVWNYDEL  474 (626)
Q Consensus       412 ~~~l~~~s~-d--g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~---I~iwd~~~~  474 (626)
                       ++|+..+. +  ..|.+||+.... ..+..   ........|+|||++|+.++.++.   +++++++..
T Consensus       343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~  408 (429)
T PRK03629        343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR  408 (429)
T ss_pred             -CEEEEEEccCCCceEEEEECCCCCeEEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence             45555443 3  358888876432 22221   122346789999999999987764   778888654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=2.3e-12  Score=115.02  Aligned_cols=243  Identities=21%  Similarity=0.298  Sum_probs=162.4

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      .++|.++|+.|+|.  ..+|++|+ ||.|+=|..........                               ....|..
T Consensus        58 eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~-------------------------------~K~lwe~  103 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLA-------------------------------TKRLWEV  103 (325)
T ss_pred             ccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhcc-------------------------------chhhhhh
Confidence            37999999999998  34788876 59999998876322100                               0001110


Q ss_pred             cCCCceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          257 EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                       ..|.+.-...-..|+++...|. +-++.++.|+.++-||+++|+..+.+. |+++|.++.--. ....+++|+.||++|
T Consensus       104 -~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvR  181 (325)
T KOG0649|consen  104 -KIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVR  181 (325)
T ss_pred             -cCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEE
Confidence             0111111122346888888875 467777799999999999999999995 999999998855 567899999999999


Q ss_pred             EEeCCCCeEEEeccCC-----------CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          335 IWGVCEKRVVDWADVR-----------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       335 iwd~~~~~~~~~~~~~-----------~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      +||+++++.+......           ..|.+++  -+..++++|+ ...+.+|.++..+... .+.+.       .++.
T Consensus       182 vWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~-vfpip-------a~v~  250 (325)
T KOG0649|consen  182 VWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTC-VFPIP-------ARVH  250 (325)
T ss_pred             EEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceE-EEecc-------ccee
Confidence            9999998877644322           2344554  3455777664 5689999999876533 23333       5678


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC-CCEEEEEeCCccEEEEE
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN  470 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd  470 (626)
                      .+.|..+   .+++++..+.|.-|.+.......... ......+.+|+.. -++|-.++..+.+.|+.
T Consensus       251 ~v~F~~d---~vl~~G~g~~v~~~~l~Gvl~a~ip~-~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  251 LVDFVDD---CVLIGGEGNHVQSYTLNGVLQANIPV-ESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             Eeeeecc---eEEEeccccceeeeeeccEEEEeccC-CccceeeecccCCceEEEEecccceeeeeee
Confidence            8888776   68888888899999876444333221 2223344444322 34555566666666653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.54  E-value=1.1e-14  Score=150.03  Aligned_cols=280  Identities=18%  Similarity=0.267  Sum_probs=193.1

Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      .++.+.||...|+|+.|...| ++++|+.|..|+||..+++.++... +|.+.|+.++.+. ++-+++++|.|..|++|-
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEe
Confidence            456788999999999999888 8999999999999999999999888 5999999999988 788899999999999999


Q ss_pred             CCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          338 VCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       338 ~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      +..+..+. +.+|.+.|++++|+|-.    +.+.||++++||.+-......   ...........+.++.|...+ ..++
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~---prp~~~~~~~~~~s~~~~~~~-~~f~  332 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV---PRPLKFTEKDLVDSILFENNG-DRFL  332 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccC---CCCCCcccccceeeeeccccc-cccc
Confidence            99988775 67999999999999965    678899999999882211111   011111223667788888887 6899


Q ss_pred             EEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCCCCC-CCCccCCccceeeeccC
Q 006909          417 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFP-SSKQKNSVRSCEHFFSE  494 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~  494 (626)
                      +++.|+.-..|.......      +...+.-+.++.+ ..+.+++-.+-.+.+|++.++... ...........+.+||-
T Consensus       333 Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF  406 (1113)
T ss_pred             cccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence            999999999887442111      1111111122212 256677777889999999987322 11222233344555655


Q ss_pred             CcEEEEecCCCCcccccccCCCccccCccccccCCCC---cccCCCcccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909          495 GVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  569 (626)
Q Consensus       495 g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~  569 (626)
                      ...++....-|             +...+|+.-++.|   ...++. -+..-.||+||..++.... -|.+.|.....
T Consensus       407 n~ri~msag~d-------------gst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~-hgql~i~g~gq  469 (1113)
T KOG0644|consen  407 NPRIAMSAGYD-------------GSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDD-HGQLYILGTGQ  469 (1113)
T ss_pred             CcHhhhhccCC-------------CceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCC-CCceEEeccCC
Confidence            44444433333             3345555544443   222322 2566789999997765554 46676654443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.8e-12  Score=136.44  Aligned_cols=202  Identities=18%  Similarity=0.220  Sum_probs=138.7

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEeCCC--cE
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG--KV  333 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg--~v  333 (626)
                      .+.+..|...+.+.+|+|+| .|+.++.+   ..|.+||+.+++............+.+|+| +++.++ +.+.+|  .|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCceE
Confidence            34455677789999999998 67766533   469999998887655444555566889999 888765 455555  59


Q ss_pred             EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CCc--EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      ++||+.+++...+..+.......+|+|||+.|+.++. +|.  |+++++.++..  ..+...+      .....++|+|+
T Consensus       275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~~lt~~g------~~~~~~~~SpD  346 (433)
T PRK04922        275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--ERLTFQG------NYNARASVSPD  346 (433)
T ss_pred             EEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEeecCC------CCccCEEECCC
Confidence            9999999888777766666678999999999887764 444  66666655443  2222222      33456899999


Q ss_pred             CCcEEEEEeCC-C--cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC---ccEEEEECCCC
Q 006909          411 ESQRIMITSED-S--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL  474 (626)
Q Consensus       411 ~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d---g~I~iwd~~~~  474 (626)
                      | ++|+..+.+ +  .|.+||..........  +........|+|||++|+..+.+   +.|+++++.+.
T Consensus       347 G-~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        347 G-KKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             C-CEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            8 566555433 2  6899997643322111  22244567899999998877653   46888888653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.54  E-value=2.8e-14  Score=138.19  Aligned_cols=255  Identities=14%  Similarity=0.146  Sum_probs=192.6

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCC----------CCCccCCCCCeeeecCCCCCCceeecC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD----------GGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      .-.-..+.++.+|++|+.|+.-|.|-.+|+.++...+.....+          ..+.+.+....+.              
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~y--------------  194 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVY--------------  194 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEE--------------
Confidence            3346789999999999999999999999999987765543222          2222222222222              


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                        +++..+..++-+..| ..|..+.|-|-. +|++++..|.++.-|+.+|+.+..+. ..+.+..+.-+| -+..+-+|.
T Consensus       195 --vYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~Gh  270 (545)
T KOG1272|consen  195 --VYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGH  270 (545)
T ss_pred             --EecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcC
Confidence              222235555666544 468899999988 77888999999999999999998886 566888899999 778889999


Q ss_pred             CCCcEEEEeCCCCe-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909          329 IDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       329 ~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  407 (626)
                      ..|+|.+|.....+ ++.+..|.++|.+|++.++|+++++.+.|..++|||+++.........        ..+...+++
T Consensus       271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--------p~~a~~ls~  342 (545)
T KOG1272|consen  271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--------PHPASNLSL  342 (545)
T ss_pred             CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--------CCCcccccc
Confidence            99999999988765 557889999999999999999999999999999999998764322111        146778889


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCC-----cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          408 SRDESQRIMITSEDSKLRILDGV-----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      |..|   +++.+....|.||.-.     .....+..+...++|..+.|.|-...|-.|...|
T Consensus       343 Sqkg---lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  343 SQKG---LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             cccc---ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            8875   5666777789999621     2233344455567899999999888887776555

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=5.1e-12  Score=119.10  Aligned_cols=257  Identities=14%  Similarity=0.272  Sum_probs=167.5

Q ss_pred             cCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          181 KGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       181 ~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      ...|+||+|-|.+ +-|+.|+..| |.||...........               ++.+..                ...
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~---------------~~~~s~----------------~~~  187 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRN---------------IRMMST----------------HHL  187 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccc---------------cccccc----------------cch
Confidence            4579999999965 4788888766 999987641110000               000000                011


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeC-CCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~-d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      .+....|| .+|+++.|.+|| .+++++. |..|.|||..++..+... ...+.++-+.|+| ++++|+.++-|+..++|
T Consensus       188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw  265 (445)
T KOG2139|consen  188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLW  265 (445)
T ss_pred             hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeee
Confidence            23334466 799999999998 7777665 578999999999888776 4566789999999 99999999999999999


Q ss_pred             eC-CCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc--eeee----------EEeec-----cccccC
Q 006909          337 GV-CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND--LKLE----------KVDFH-----DRKKTS  398 (626)
Q Consensus       337 d~-~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~--~~~~----------~~~~~-----~~~~~~  398 (626)
                      .. ++-....+....+.|...+|+|+|+.|+.... |.-++|.+.-..  ....          ...+.     .....-
T Consensus       266 ~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~  344 (445)
T KOG2139|consen  266 QENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLC  344 (445)
T ss_pred             hhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccc
Confidence            54 44455566666779999999999998776543 333444442111  1000          00000     011122


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCC--------cEEEEeCCc-ceeeee--ecCCCCCeEEEEEcC---CCCEEEEEeCCc
Q 006909          399 GNKITGIQFSRDESQRIMITSEDS--------KLRILDGVD-VIHKFK--GLPKSGSQMSASFTT---TGKHIISIGDDC  464 (626)
Q Consensus       399 ~~~i~~l~~s~~~~~~l~~~s~dg--------~i~iwd~~~-~~~~~~--~~~~~~~v~~~~~sp---~g~~l~s~s~dg  464 (626)
                      .+.+.+++|.|.| .++++.-..+        .|.+||++. ....+.  +.........++|+|   +|.+|..+=.-|
T Consensus       345 cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTG  423 (445)
T KOG2139|consen  345 CGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTG  423 (445)
T ss_pred             cCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccC
Confidence            5678899999998 6888776543        366788663 222222  222333456677766   567777777778


Q ss_pred             cEEEEECCC
Q 006909          465 RVYVWNYDE  473 (626)
Q Consensus       465 ~I~iwd~~~  473 (626)
                      .+.-|++.-
T Consensus       424 riq~ypl~f  432 (445)
T KOG2139|consen  424 RIQRYPLTF  432 (445)
T ss_pred             ceEeeeeEE
Confidence            888777653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=2e-12  Score=135.37  Aligned_cols=219  Identities=13%  Similarity=0.061  Sum_probs=147.2

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      +.+..+...+.+.+|||||+.||..+.   +..|.+|++.++...                                   
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-----------------------------------  236 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-----------------------------------  236 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence            445567788999999999998887542   356889998764321                                   


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEEE-EeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLS-CSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s-~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                              .+..+.+   .+..++|+|+| .|+. .+.++  .|.+||+.++.......+...+....|+| +++.|+..
T Consensus       237 --------~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~  304 (429)
T PRK03629        237 --------QVASFPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYT  304 (429)
T ss_pred             --------EccCCCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEE
Confidence                    1122223   33457999998 5553 34454  48899999887766665666788999999 99988777


Q ss_pred             eCC-C--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC---CcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          328 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       328 s~d-g--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +.+ +  .|.++|+.++....+...........|+|+|++++..+.+   ..|.+||+.++....  +.  ..     ..
T Consensus       305 s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~--Lt--~~-----~~  375 (429)
T PRK03629        305 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--LT--DT-----FL  375 (429)
T ss_pred             eCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE--eC--CC-----CC
Confidence            654 3  4555577777666555555556778999999999886654   358888987765321  11  11     12


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCc---EEEEeCCc-ceeeeeecCCCCCeEEEEEcC
Q 006909          402 ITGIQFSRDESQRIMITSEDSK---LRILDGVD-VIHKFKGLPKSGSQMSASFTT  452 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~---i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp  452 (626)
                      .....|+||| +.|+.++.++.   +.++++.. ....+..  +.+.+...+|+|
T Consensus       376 ~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~--~~~~~~~p~Wsp  427 (429)
T PRK03629        376 DETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFKARLPA--TDGQVKFPAWSP  427 (429)
T ss_pred             CCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCeEECcc--CCCCcCCcccCC
Confidence            3467899998 67777776654   66677542 2333333  566778888887

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=6e-12  Score=132.62  Aligned_cols=202  Identities=15%  Similarity=0.192  Sum_probs=142.4

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeC---CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEeCCCc--E
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGK--V  333 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg~--v  333 (626)
                      .+.+..|...+...+|+|+| .|+..+.   +..|.+||+.+++......+...+...+|+| +++.|+ +.+.++.  |
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~I  272 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDI  272 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceE
Confidence            45566788899999999998 6666553   4689999999887765555667778899999 888765 5555554  7


Q ss_pred             EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      ++||+.++....+..+........|+|||+.|+..+. +|  .|+++|+.+....  .+...      ...+....|+|+
T Consensus       273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~--~lt~~------~~~~~~~~~Spd  344 (435)
T PRK05137        273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR--RISFG------GGRYSTPVWSPR  344 (435)
T ss_pred             EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE--EeecC------CCcccCeEECCC
Confidence            7889999888877777777788999999999887764 33  6777887665432  22211      144667889999


Q ss_pred             CCcEEEEEeCC---CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC------ccEEEEECCCC
Q 006909          411 ESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD------CRVYVWNYDEL  474 (626)
Q Consensus       411 ~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d------g~I~iwd~~~~  474 (626)
                      | +.|+..+.+   ..|.+||..........  ....+....|+|||++|+..+.+      ..|+++++.++
T Consensus       345 G-~~ia~~~~~~~~~~i~~~d~~~~~~~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        345 G-DLIAFTKQGGGQFSIGVMKPDGSGERILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             C-CEEEEEEcCCCceEEEEEECCCCceEecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            8 566555433   36788886432222111  22346778999999998876543      25788888664

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=6.4e-12  Score=131.76  Aligned_cols=202  Identities=17%  Similarity=0.199  Sum_probs=133.9

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEeCCCcEEE
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRI  335 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg~v~i  335 (626)
                      .+.+..+...+.+.+|+|+| .|+..+.+   ..|.+||+.+++..........+.+.+|+| +++.|+ +.+.+|...|
T Consensus       188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~I  266 (427)
T PRK02889        188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQI  266 (427)
T ss_pred             ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceE
Confidence            34455677889999999998 66665543   359999999887765544556677899999 988776 5567776555


Q ss_pred             E--eCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          336 W--GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       336 w--d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      |  |+.++....+..+........|+|||+.|+..+. +|...+|.+.........+...+      .......|+|+| 
T Consensus       267 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g------~~~~~~~~SpDG-  339 (427)
T PRK02889        267 YTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG------SYNTSPRISPDG-  339 (427)
T ss_pred             EEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC------CCcCceEECCCC-
Confidence            5  5666666666666666677899999998886654 46666666542221122222222      234467899998 


Q ss_pred             cEEEEEeCCC---cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc---cEEEEECC
Q 006909          413 QRIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYD  472 (626)
Q Consensus       413 ~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg---~I~iwd~~  472 (626)
                      ++|+..+.++   .|.+||..........  .........|+|||++|+.++.++   .+++.++.
T Consensus       340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~  403 (427)
T PRK02889        340 KLLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD  403 (427)
T ss_pred             CEEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence            5666665543   6999997643322211  223346789999999998887654   35555554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=2.4e-13  Score=132.62  Aligned_cols=308  Identities=17%  Similarity=0.182  Sum_probs=213.9

Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeCCC-CEEEEEeCCCcEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDD-NYFISGSIDGKVR  334 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~~~-~~l~s~s~dg~v~  334 (626)
                      .....|.+|.+.|+.+.|+..| .|+++|.|..|.+||...+.....|  +|...|....|-|..+ ..+++.+.||.|+
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            3456788999999999999887 8999999999999999988888777  4888888888988543 5689999999999


Q ss_pred             EEeCCC-Ce---EEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          335 IWGVCE-KR---VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       335 iwd~~~-~~---~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      +=.+.. +.   ......|.++|.-++.-|+. ..|.+++.|+.+.-+|++......... .........-....++..|
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCC
Confidence            887643 32   23467899999999999964 568899999999999998765433322 1111111112567889999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCccee--------eeee----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909          410 DESQRIMITSEDSKLRILDGVDVIH--------KFKG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  477 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~~--------~~~~----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~  477 (626)
                      .....+++++.|-.+++||.+....        .+..    ......|++++|+.++.-|.++-.|-.||+++-.-+...
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~  371 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS  371 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence            9888999999999999999763211        1111    123457899999988777777777888999954332111


Q ss_pred             CCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCC--CcccCCccc-cCCCCcccc
Q 006909          478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDS--ERFSLGSWF-SNDGPCRGS  554 (626)
Q Consensus       478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~-s~dg~~l~s  554 (626)
                      ...      +.   +|...++        ..+                       ..+|  ...|.++.| -|...++++
T Consensus       372 ~p~------~~---s~~~~~~--------k~v-----------------------YKGHrN~~TVKgVNFfGPrsEyVvS  411 (559)
T KOG1334|consen  372 EPD------PS---SPREQYV--------KRV-----------------------YKGHRNSRTVKGVNFFGPRSEYVVS  411 (559)
T ss_pred             CCC------CC---cchhhcc--------chh-----------------------hcccccccccceeeeccCccceEEe
Confidence            000      00   0000000        000                       0111  112445544 678889999


Q ss_pred             cCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccc-cccceEEEEecCCceEeeeee
Q 006909          555 ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAIS-ATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       555 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                      ++. =|.|++|+-.++           +..+........++.+- +++--+|||.|-|.-|+||-=
T Consensus       412 GSD-CGhIFiW~K~t~-----------eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  412 GSD-CGHIFIWDKKTG-----------EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             cCc-cceEEEEecchh-----------HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence            987 489999999988           55555555444334433 346778999999999999963

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.51  E-value=6.9e-14  Score=135.53  Aligned_cols=227  Identities=12%  Similarity=0.123  Sum_probs=182.1

Q ss_pred             ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc
Q 006909          270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  348 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  348 (626)
                      .-..+.++.+| .|+.|+..|.|-.+|..+++....+.....|..+.|.. +.++||++- ...++|||-.+-++. ...
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~~GtElH-Clk  207 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVAQ-KKYVYVYDNNGTELH-CLK  207 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhhh-hceEEEecCCCcEEe-ehh
Confidence            34567888888 89999999999999999999999999889999999998 777777764 578999997655544 444


Q ss_pred             CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909          349 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  428 (626)
Q Consensus       349 ~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd  428 (626)
                      ....|..+.|-|..-+|++++..|.++.-|++.+++...       .....+.+..++-+|-+ ..+-+|...|+|.+|.
T Consensus       208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~-------~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS-------IRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWS  279 (545)
T ss_pred             hcCchhhhcccchhheeeecccCCceEEEeechhhhhHH-------HHccCCccchhhcCCcc-ceEEEcCCCceEEecC
Confidence            556788999999999999999999999999999887543       12223678888889986 6888999999999999


Q ss_pred             CCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcc
Q 006909          429 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTE  508 (626)
Q Consensus       429 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~  508 (626)
                      ........+...|.++|.++++.++|+|++|++.|..++|||+.+...+.........+.++++..| .+|+++.+.-..
T Consensus       280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~i  358 (545)
T KOG1272|consen  280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQI  358 (545)
T ss_pred             CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeee
Confidence            7755555556669999999999999999999999999999999987655444444455556677655 457776655443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.51  E-value=9e-12  Score=115.95  Aligned_cols=245  Identities=14%  Similarity=0.179  Sum_probs=164.8

Q ss_pred             CcEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          182 GCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latg-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      +.|..+.|..|..+++.+ ..|+.|.+|++...+-                                             
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew---------------------------------------------   83 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW---------------------------------------------   83 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeeccee---------------------------------------------
Confidence            467888999888766654 6788999999976322                                             


Q ss_pred             ceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC--------
Q 006909          261 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--------  330 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d--------  330 (626)
                      ...+......+..+.|+|+|  .|.+...+-.|.+|.+.+......-.....+..++|+| ++++.+.++.-        
T Consensus        84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i  162 (447)
T KOG4497|consen   84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQI  162 (447)
T ss_pred             EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHH
Confidence            23344456789999999998  67788889999999998877765554455678899999 88887765532        


Q ss_pred             ----------------------------CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC
Q 006909          331 ----------------------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  382 (626)
Q Consensus       331 ----------------------------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~  382 (626)
                                                  ..+.+||.--.-.+......-.+..++|+|.++++++|+.|+.+++.+--+-
T Consensus       163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW  242 (447)
T KOG4497|consen  163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW  242 (447)
T ss_pred             HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence                                        1233333221111112223356889999999999999999998876432110


Q ss_pred             ce--------------------------------------------------eee----EEeec-----cccccCCCCeE
Q 006909          383 DL--------------------------------------------------KLE----KVDFH-----DRKKTSGNKIT  403 (626)
Q Consensus       383 ~~--------------------------------------------------~~~----~~~~~-----~~~~~~~~~i~  403 (626)
                      +.                                                  ..+    ...++     .....+...+.
T Consensus       243 k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g  322 (447)
T KOG4497|consen  243 KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAG  322 (447)
T ss_pred             eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccc
Confidence            00                                                  000    00000     11112234566


Q ss_pred             EEEEcCCCCcEEEEEeCC--CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          404 GIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      -++|++|. .++++-...  +.+.+||+++... ........+|....|+|....|+.+.....+++|.....
T Consensus       323 ~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l-~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  323 KLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL-HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             eeeecCCc-eEEeeecCCCCceEEEEechhhhh-hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence            79999995 566665443  6899999875432 222235678999999999999888888888999998764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=4.5e-12  Score=133.55  Aligned_cols=220  Identities=13%  Similarity=0.143  Sum_probs=149.3

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      .+.+..|.+.|.+.+|||||+.|+..+.   +..|.+||+.++..                                   
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----------------------------------  238 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----------------------------------  238 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----------------------------------
Confidence            3456678899999999999999888763   46899999976421                                   


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eE-EEEeCCCc--EEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEE
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  326 (626)
                                 ..+..+.+.+...+|+|+| .| ++.+.++.  |.+||+.++.......+........|+| +++.|+.
T Consensus       239 -----------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f  306 (435)
T PRK05137        239 -----------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVF  306 (435)
T ss_pred             -----------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEE
Confidence                       2333455667788999998 44 46666655  7777998887765555666677899999 9998887


Q ss_pred             EeC-CC--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC---CcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          327 GSI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       327 ~s~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      .+. +|  .|+++|+.++....+......+....|+|+|+.|+....+   ..|.+||+.+....  .+. .      ..
T Consensus       307 ~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~lt-~------~~  377 (435)
T PRK05137        307 ESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--ILT-S------GF  377 (435)
T ss_pred             EECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE--ecc-C------CC
Confidence            764 33  6888898887776665555667778999999999887654   35778887654321  111 1      12


Q ss_pred             CeEEEEEcCCCCcEEEEEeC-C-----CcEEEEeCCcceeeeeecCCCCCeEEEEEcC
Q 006909          401 KITGIQFSRDESQRIMITSE-D-----SKLRILDGVDVIHKFKGLPKSGSQMSASFTT  452 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~-d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  452 (626)
                      .+..+.|+||| +.|+..+. .     ..+.++|+...... .. ...+.+...+|+|
T Consensus       378 ~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l-~~~~~~~~p~Wsp  432 (435)
T PRK05137        378 LVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRNER-EV-PTPGDASDPAWSP  432 (435)
T ss_pred             CCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCceE-Ec-cCCCCccCcccCC
Confidence            46678999998 45544433 3     25777776532221 11 1233456667765

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=1.6e-11  Score=122.32  Aligned_cols=321  Identities=17%  Similarity=0.211  Sum_probs=194.6

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      ..++..++|++|+++|.+. +..++|++..+..                                             .+
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~---------------------------------------------~~   68 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK---------------------------------------------VV   68 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc---------------------------------------------EE
Confidence            3478899999999988865 5679999987632                                             11


Q ss_pred             eeeccCccceEEEEEcCCC-eEEE-----EeC-----CCcEEEeccCCCeeeEeecC-CCCeEEEEEeeCCCCEEEEEeC
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLS-----CSM-----DKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s-----~s~-----d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                      .+.  ....+.++.|+|-+ +|.+     ...     ...+.+|+++++.....+.. ...-++..|++ +..+.+- -.
T Consensus        69 lt~--~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~-dEsl~ar-lv  144 (566)
T KOG2315|consen   69 LCV--ELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSI-DESLAAR-LV  144 (566)
T ss_pred             EEe--ccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCccccccc-chhhhhh-hh
Confidence            111  12267888888876 4443     112     23477999998655555531 11126889998 6654432 23


Q ss_pred             CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCC--CEEEE-----EecCCcEEEEEcCCCce--eeeEEeeccccccCCC
Q 006909          330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDG--KGFIV-----GSITGTCHFYKASGNDL--KLEKVDFHDRKKTSGN  400 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g--~~l~~-----g~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~  400 (626)
                      .+.+.+|++..-+.....-+...|+.+.++|.+  ..+++     ++.-+.+++|.......  ....-.+-      ..
T Consensus       145 ~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF------ka  218 (566)
T KOG2315|consen  145 SNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF------KA  218 (566)
T ss_pred             cceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc------cc
Confidence            467999999886665556667789999999873  34443     34456899998762211  11111111      12


Q ss_pred             CeEEEEEcCCCCcEEEEEeCC-----------CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE--eCCccEE
Q 006909          401 KITGIQFSRDESQRIMITSED-----------SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI--GDDCRVY  467 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~--s~dg~I~  467 (626)
                      .=..+.|++-|..+|+.++.|           .+++++++......+.. ...++|.++.|+|+|+-++.+  -.-..+.
T Consensus       219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvt  297 (566)
T KOG2315|consen  219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVT  297 (566)
T ss_pred             ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEE
Confidence            334677888876666665543           36777777633333333 357899999999999766553  4567888


Q ss_pred             EEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccC
Q 006909          468 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSN  547 (626)
Q Consensus       468 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~  547 (626)
                      |||++..  +.           .-.|.|...++-|+|.|.++...+-+.+                              
T Consensus       298 ifnlr~~--~v-----------~df~egpRN~~~fnp~g~ii~lAGFGNL------------------------------  334 (566)
T KOG2315|consen  298 IFNLRGK--PV-----------FDFPEGPRNTAFFNPHGNIILLAGFGNL------------------------------  334 (566)
T ss_pred             EEcCCCC--Ee-----------EeCCCCCccceEECCCCCEEEEeecCCC------------------------------
Confidence            9988763  11           1123344444444444444333233222                              


Q ss_pred             CCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEec------CCceEeeeeecC
Q 006909          548 DGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAG------CDGMIKTFHNYG  621 (626)
Q Consensus       548 dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g------~Dg~Irvw~~~g  621 (626)
                                 -|.+.+||+...           +..............+++ ||++|+||.      -|.-|+|||.+|
T Consensus       335 -----------~G~mEvwDv~n~-----------K~i~~~~a~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  335 -----------PGDMEVWDVPNR-----------KLIAKFKAANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             -----------CCceEEEeccch-----------hhccccccCCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecC
Confidence                       245667776654           222222222333345666 788888877      367899999999


Q ss_pred             cccc
Q 006909          622 LPIR  625 (626)
Q Consensus       622 ~p~~  625 (626)
                      -+++
T Consensus       392 ~~l~  395 (566)
T KOG2315|consen  392 SLLH  395 (566)
T ss_pred             ceee
Confidence            8764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.48  E-value=6.6e-12  Score=117.56  Aligned_cols=263  Identities=17%  Similarity=0.301  Sum_probs=170.2

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      -.+-|.++.|..+|.+||||..+|.|.++.-+.....                 ...+...-+++          ..+..
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-----------------ey~~~t~fqsh----------epEFD   76 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-----------------EYNFQTEFQSH----------EPEFD   76 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeeccccccc-----------------ceeeeeeeecc----------Ccccc
Confidence            3456899999999999999999999999976542110                 00000000000          00001


Q ss_pred             CceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCCe-----------------------------------e
Q 006909          260 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ-----------------------------------C  301 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~-----------------------------------~  301 (626)
                      .+..+ .-...|+.+.|.+++   .++..+.|++|++|.+....                                   +
T Consensus        77 YLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p  155 (433)
T KOG1354|consen   77 YLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP  155 (433)
T ss_pred             hhhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee
Confidence            11111 124678999998764   77888899999999874221                                   1


Q ss_pred             eEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-C---eEEEeccC-----CCCeEEEEEee-CCCEEEEEe
Q 006909          302 LNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-K---RVVDWADV-----RDVISAICYIP-DGKGFIVGS  369 (626)
Q Consensus       302 ~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~---~~~~~~~~-----~~~i~~i~~sp-~g~~l~~g~  369 (626)
                      .+.+  .|.-.|+++.++. +...++++. |=.|.+|++.- .   .++...++     ...|++..|+| ..+.++-.+
T Consensus       156 rRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  156 RRVYANAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeeccccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence            1122  2677789999998 888888865 67899999853 2   23333332     35689999999 467888899


Q ss_pred             cCCcEEEEEcCCCceeeeEEee-cc-c-------cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC---cceeeee
Q 006909          370 ITGTCHFYKASGNDLKLEKVDF-HD-R-------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---DVIHKFK  437 (626)
Q Consensus       370 ~dg~i~i~d~~~~~~~~~~~~~-~~-~-------~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~---~~~~~~~  437 (626)
                      ..|+|++.|++...+-.....+ .. .       ....-..|..+.|+++| +++++-. --+|++||+.   .++..+.
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRD-yltvk~wD~nme~~pv~t~~  311 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRD-YLTVKLWDLNMEAKPVETYP  311 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEec-cceeEEEeccccCCcceEEe
Confidence            9999999999844322110000 00 0       00112568899999998 5666543 3799999974   3444554


Q ss_pred             ecCC----------CCC---eEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          438 GLPK----------SGS---QMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       438 ~~~~----------~~~---v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+..          ...   -..++|+-++.+++||+..+..+++++..+
T Consensus       312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  312 VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            4221          112   245789999999999999999999997665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=5.7e-12  Score=132.18  Aligned_cols=208  Identities=15%  Similarity=0.148  Sum_probs=130.7

Q ss_pred             CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC---CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEE
Q 006909          289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF  365 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l  365 (626)
                      ..|.++|...........+...+.+.+|+| +++.|+..+.+   ..|.+||+.+++...+......+.+..|+|||+.|
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            467788876544444456778899999999 99998887643   35999999998877666566677889999999988


Q ss_pred             EE-EecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC--Ccc-eeeeeecCC
Q 006909          366 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG--VDV-IHKFKGLPK  441 (626)
Q Consensus       366 ~~-g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~--~~~-~~~~~~~~~  441 (626)
                      +. .+.+|...+|.+.........+..      +........|+|||..+++++..++...||..  ... ...+..  .
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~  326 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSGLRRLTQ------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--T  326 (427)
T ss_pred             EEEEccCCCceEEEEECCCCCcEECCC------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--C
Confidence            75 567777666655322111222211      12345678899998444444444566666653  322 222222  2


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCc---cEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCC
Q 006909          442 SGSQMSASFTTTGKHIISIGDDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG  506 (626)
Q Consensus       442 ~~~v~~~~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~  506 (626)
                      ........|+|||++|+..+.++   .|++||+.++......... ......|+|+|..++.+....|
T Consensus       327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g  393 (427)
T PRK02889        327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-RDESPSFAPNGRYILYATQQGG  393 (427)
T ss_pred             CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-CccCceECCCCCEEEEEEecCC
Confidence            23344678999999999877554   6999999876322211111 1123456666665555544333

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.48  E-value=3.2e-11  Score=114.33  Aligned_cols=235  Identities=10%  Similarity=0.024  Sum_probs=159.7

Q ss_pred             ccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeee-EeecCCCCeEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCeE
Q 006909          268 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRV  343 (626)
Q Consensus       268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~s~dg--~v~iwd~~~~~~  343 (626)
                      ...+..+.|+.+. .|..|+.|| .+++........ ........|.-+-|+   ..++|..+.+.  .+++++.+.+..
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCce
Confidence            3456677788777 555666666 678877644331 111233456666674   46666666554  499999988887


Q ss_pred             EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE--eCC
Q 006909          344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT--SED  421 (626)
Q Consensus       344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~--s~d  421 (626)
                      +-.......|.++.++.+  +|++.-.+. |+|||+++.+..-.....    ..+...+..+.+++.+ .+++.-  ...
T Consensus        81 ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~----~~n~~gl~AlS~n~~n-~ylAyp~s~t~  152 (391)
T KOG2110|consen   81 ICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETT----PPNPKGLCALSPNNAN-CYLAYPGSTTS  152 (391)
T ss_pred             EEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhcc----CCCccceEeeccCCCC-ceEEecCCCCC
Confidence            776777788888887644  677666554 999999988764322111    1223556666666665 466643  335


Q ss_pred             CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCcc-EEEEECCCCCCCCCCcc---CCccceeeeccCCcE
Q 006909          422 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR-VYVWNYDELCFPSSKQK---NSVRSCEHFFSEGVS  497 (626)
Q Consensus       422 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~-I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~g~~  497 (626)
                      |.|.|||+.+.........|.+.+.+++|+++|.+|||+|+.|+ |+|+.+.++.....-+.   -..+..+.|+|++.+
T Consensus       153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~  232 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF  232 (391)
T ss_pred             ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence            89999999887777666779999999999999999999999886 69999998843322222   223344577777777


Q ss_pred             EEEecCCCCcccccccC
Q 006909          498 VAVQWPGIGTEQKSLCS  514 (626)
Q Consensus       498 ~av~~s~~~~~l~~~~~  514 (626)
                      ++++-+-+...++.+..
T Consensus       233 L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  233 LAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEecCCCeEEEEEecc
Confidence            77776666666666554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=6.7e-12  Score=132.08  Aligned_cols=220  Identities=15%  Similarity=0.159  Sum_probs=146.0

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      .+.+..|...+.+.+|+|||+.|+..+.+   ..|.+||+.++..                                   
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----------------------------------  240 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----------------------------------  240 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----------------------------------
Confidence            34566788899999999999999987743   4699999876422                                   


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eE-EEEeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEE
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  326 (626)
                                 ..+..+.+...+.+|+|+| .| ++.+.++  .|.+||+.+++......+.......+|+| +++.|+.
T Consensus       241 -----------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f  308 (433)
T PRK04922        241 -----------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYF  308 (433)
T ss_pred             -----------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEE
Confidence                       1222233344578999998 44 4555555  59999999887665555555567889999 9998887


Q ss_pred             EeC-CCc--EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC---cEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          327 GSI-DGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       327 ~s~-dg~--v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      ++. +|.  |+++|+.+++...+.........++|+|+|++++..+.++   .|.+||+.++...  .+. ++      .
T Consensus       309 ~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt-~~------~  379 (433)
T PRK04922        309 TSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT-PG------S  379 (433)
T ss_pred             EECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC-CC------C
Confidence            764 444  7777887776655444444555789999999998876543   6899998776543  111 11      2


Q ss_pred             CeEEEEEcCCCCcEEEEEeC-C--CcEEEEeCCcc-eeeeeecCCCCCeEEEEEcC
Q 006909          401 KITGIQFSRDESQRIMITSE-D--SKLRILDGVDV-IHKFKGLPKSGSQMSASFTT  452 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~-d--g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp  452 (626)
                      ......|+||| ++++..+. .  +.|.+++.... ...+.  .+.+.+...+|+|
T Consensus       380 ~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~~~~l~--~~~g~~~~p~wsp  432 (433)
T PRK04922        380 LDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRVRQRLV--SADGEVREPAWSP  432 (433)
T ss_pred             CCCCceECCCC-CEEEEEEecCCceEEEEEECCCCceEEcc--cCCCCCCCCccCC
Confidence            33456899998 45555444 2  35777776532 22222  2345566677776

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.46  E-value=6.7e-12  Score=115.85  Aligned_cols=113  Identities=19%  Similarity=0.416  Sum_probs=91.4

Q ss_pred             CccceEEEEEcCCC-eEE--EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC---CcEEEEeCCC
Q 006909          267 HKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE  340 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~--s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~v~iwd~~~  340 (626)
                      ..++|.+++|+|++ .++  +|..++.|.+||++ ++.+..+. ...++.+.|+| +|+++++|+.+   |.|.+||+++
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~  134 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK  134 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence            34579999999987 543  45567899999997 66666664 46788999999 99999998754   6699999998


Q ss_pred             CeEEEeccCCCCeEEEEEeeCCCEEEEEec------CCcEEEEEcCCCc
Q 006909          341 KRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGND  383 (626)
Q Consensus       341 ~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~------dg~i~i~d~~~~~  383 (626)
                      .+.+....+.. ++.++|+|+|+++++++.      |+.++||+..+..
T Consensus       135 ~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~  182 (194)
T PF08662_consen  135 KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL  182 (194)
T ss_pred             CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence            88887666654 789999999999999874      6888999987553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.41  E-value=8.8e-11  Score=119.41  Aligned_cols=324  Identities=13%  Similarity=0.090  Sum_probs=181.4

Q ss_pred             EEEEeCCCcEEEeccCCCeeeEeecCCCCe-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee
Q 006909          282 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYV-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP  360 (626)
Q Consensus       282 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp  360 (626)
                      +++-..++.|.+.|..+.+.+..+.....+ ..+.|+| +++++++++.||.|.++|+.+.+++...........+++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~   87 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP   87 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence            456667899999999999999999754444 4577889 99999999999999999999999988888888889999999


Q ss_pred             CCCEEEEEe-cCCcEEEEEcCCCceeeeEEeecc-ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-eee
Q 006909          361 DGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHD-RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFK  437 (626)
Q Consensus       361 ~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~  437 (626)
                      ||++++++. ..+.+.++|..+.+.... +.... .......++..+..+|....++++.-+.+.|.+.|..+... ...
T Consensus        88 DG~~~~v~n~~~~~v~v~D~~tle~v~~-I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDAETLEPVKT-IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEETTT--EEEE-EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred             CCCEEEEEecCCCceeEeccccccceee-cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence            999999875 689999999988765433 22111 11113457888888888754555666668999999654311 112


Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCCCCCCCCcc---CCccceee-eccC-CcEEEEecCCCCccc-c
Q 006909          438 GLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSSKQK---NSVRSCEH-FFSE-GVSVAVQWPGIGTEQ-K  510 (626)
Q Consensus       438 ~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~-~~~~-g~~~av~~s~~~~~l-~  510 (626)
                      ............|+|+++|++.+ ..++.|-++|..+.........   ........ .||. |.+.+..  ..+... .
T Consensus       167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~--~~~~~~~~  244 (369)
T PF02239_consen  167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS--GLGYFAIP  244 (369)
T ss_dssp             EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE--BSSSSEEE
T ss_pred             eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec--cccceecc
Confidence            22234567889999999987765 4567899999888632211111   00111111 2333 2333332  122222 2


Q ss_pred             cccCCCcc-ccCccccccCCCCcccCCCcccCCccccCCCCccccc---CCCCCCCCCCCcccCCCCCCCChhhHHHHhh
Q 006909          511 SLCSSSLR-DCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSA---TWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQ  586 (626)
Q Consensus       511 ~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~---~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  586 (626)
                      ....+... .....|......+.   .+.. .-+..+||++++...   ......|.++|..+.. .. .     . ...
T Consensus       245 ~ig~~~v~v~d~~~wkvv~~I~~---~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~-~-----~-i~~  312 (369)
T PF02239_consen  245 LIGTDPVSVHDDYAWKVVKTIPT---QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VV-K-----T-ITP  312 (369)
T ss_dssp             EEE--TTT-STTTBTSEEEEEE----SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EE-E-------HHH
T ss_pred             cccCCccccchhhcCeEEEEEEC---CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc-ee-E-----E-Eec
Confidence            23333322 22344555443332   2222 556679999988765   3324688889888751 00 0     0 001


Q ss_pred             hccCCccccccccccceEEE-EecCCc-eEeeeeecCc
Q 006909          587 CLNNVDDVRAISATWGLVIV-TAGCDG-MIKTFHNYGL  622 (626)
Q Consensus       587 ~~~~~~~~~~~s~~dg~~iv-t~g~Dg-~Irvw~~~g~  622 (626)
                      ..........+++ ||+.+- |...++ .|.+|+..-|
T Consensus       313 ~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  313 GPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             HHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTT
T ss_pred             cCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCc
Confidence            1111122245666 676544 433333 7999986543

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=2.8e-11  Score=115.52  Aligned_cols=203  Identities=18%  Similarity=0.218  Sum_probs=153.1

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      ....+++|..++.. || .|++|-.+|.+.+|....+...                                        
T Consensus       101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h----------------------------------------  138 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH----------------------------------------  138 (412)
T ss_pred             cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc----------------------------------------
Confidence            34566778777765 34 6777888999999998864321                                        


Q ss_pred             cCCCceeeccCccceEEEEEcCC--CeEEEEeCC--CcEEEeccCCCeeeEeec----------CCCCeEEEEEeeCC--
Q 006909          257 EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMD--KTVRMWQVGCNQCLNVFD----------HHNYVTCVQFNPID--  320 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d--~~v~iwd~~~~~~~~~~~----------~~~~v~~~~~~p~~--  320 (626)
                       ..++..+..+ ..+..+.-++.  +.+++|+..  ..+.|||++..+.+..-.          .+-+++.+.|.+ .  
T Consensus       139 -ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~  215 (412)
T KOG3881|consen  139 -SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSP  215 (412)
T ss_pred             -cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCC
Confidence             1223333333 34444554543  367779988  889999999875554431          344678899988 5  


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCe--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccC
Q 006909          321 DNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  398 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  398 (626)
                      ...|++++.-+.|++||.+.++  +..+.-...+++++...|+|+.+++|..-|.+..||++++......      ....
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~------~kg~  289 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG------LKGI  289 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc------cCCc
Confidence            7889999999999999998654  3445566789999999999999999999999999999988765432      2233


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      .+.|+++..+|.. .++++++-|..|+|+|+.+
T Consensus       290 tGsirsih~hp~~-~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  290 TGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             cCCcceEEEcCCC-ceEEeeccceeEEEeeccc
Confidence            4899999999996 7999999999999999876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.40  E-value=3.6e-11  Score=111.01  Aligned_cols=149  Identities=14%  Similarity=0.294  Sum_probs=102.6

Q ss_pred             EEEEEeeCCCCEEEEEeC----------CCcEEEEeC--CCCeEEEe-ccCCCCeEEEEEeeCCCEEEEE--ecCCcEEE
Q 006909          312 TCVQFNPIDDNYFISGSI----------DGKVRIWGV--CEKRVVDW-ADVRDVISAICYIPDGKGFIVG--SITGTCHF  376 (626)
Q Consensus       312 ~~~~~~p~~~~~l~s~s~----------dg~v~iwd~--~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~g--~~dg~i~i  376 (626)
                      ..+.|+| .|++|+.-..          -+...+|.+  .......+ ....++|.+++|+|+|+.|++.  ..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            3567888 7776654332          123444444  43333332 2334579999999999987664  45679999


Q ss_pred             EEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC---CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC
Q 006909          377 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT  453 (626)
Q Consensus       377 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  453 (626)
                      ||++....    ..+.      ...+..+.|+|+| +++++++.   .|.|.+||..+.......  ....++.++|+|+
T Consensus        88 yd~~~~~i----~~~~------~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~~WsPd  154 (194)
T PF08662_consen   88 YDVKGKKI----FSFG------TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDVEWSPD  154 (194)
T ss_pred             EcCcccEe----Eeec------CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEEEEcCC
Confidence            99962221    1222      2567889999998 67777764   467999999866555444  2345789999999


Q ss_pred             CCEEEEEeC------CccEEEEECCCC
Q 006909          454 GKHIISIGD------DCRVYVWNYDEL  474 (626)
Q Consensus       454 g~~l~s~s~------dg~I~iwd~~~~  474 (626)
                      |++|++++.      |+.++||++.+.
T Consensus       155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  155 GRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CCEEEEEEeccceeccccEEEEEecCe
Confidence            999999874      788999999764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.39  E-value=1.3e-10  Score=118.18  Aligned_cols=292  Identities=14%  Similarity=0.066  Sum_probs=159.3

Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe-CCCcEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIW  336 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~v~iw  336 (626)
                      +.+..+......-..+.|+||+ ++++++.||.|.++|+.+++.+..+.......++++++ ++++++++. ..+.+.++
T Consensus        27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~-DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP-DGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE---TTTEEEEEEEETTEEEEE
T ss_pred             eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC-CCCEEEEEecCCCceeEe
Confidence            3455555444444557789988 78888999999999999999999998888889999999 999988775 57999999


Q ss_pred             eCCCCeEEEecc--------CCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909          337 GVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       337 d~~~~~~~~~~~--------~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  407 (626)
                      |.++.+++....        ....+.++..+|....+++.-.+ +.|-+.|..............      ........|
T Consensus       106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~------g~~~~D~~~  179 (369)
T PF02239_consen  106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV------GRFPHDGGF  179 (369)
T ss_dssp             ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--------TTEEEEEE
T ss_pred             ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc------ccccccccc
Confidence            999988766432        23467788888988867666554 888888877654332211111      256778999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCcceeeeee----cCCCCCeEEEEEcCCC-CEEEEEe---------CCccEEEEECCC
Q 006909          408 SRDESQRIMITSEDSKLRILDGVDVIHKFKG----LPKSGSQMSASFTTTG-KHIISIG---------DDCRVYVWNYDE  473 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~sp~g-~~l~s~s---------~dg~I~iwd~~~  473 (626)
                      +|++..++++...++.|-++|..+.......    ..|..+...+ .+|.. ...++.+         ....+.+|+..+
T Consensus       180 dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~  258 (369)
T PF02239_consen  180 DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA  258 (369)
T ss_dssp             -TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred             CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhc
Confidence            9998545555677889999998765433322    1233333332 23332 1122221         122333444443


Q ss_pred             CCCCCCCccCCccceeeeccCCcEEEEe--cCCCCcccccccCCCccccCccccccCC--CCcc-cCCCcccCCccccCC
Q 006909          474 LCFPSSKQKNSVRSCEHFFSEGVSVAVQ--WPGIGTEQKSLCSSSLRDCSQKWDNLET--APWI-RDSERFSLGSWFSND  548 (626)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~g~~~av~--~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~~~-~~~~~~~~~~~~s~d  548 (626)
                      .............-.+..||++..+.+.  .+++...            +.+.+....  ...+ ...+..+..+.|++|
T Consensus       259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~------------v~viD~~tl~~~~~i~~~~~~~~~h~ef~~d  326 (369)
T PF02239_consen  259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADT------------VQVIDKKTLKVVKTITPGPGKRVVHMEFNPD  326 (369)
T ss_dssp             TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-------------EEEEECCGTEEEE-HHHHHT--EEEEEE-TT
T ss_pred             CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCce------------EEEEECcCcceeEEEeccCCCcEeccEECCC
Confidence            3211111111111223334444444443  1122122            222222111  1111 111223778899999


Q ss_pred             CCcccccCCCCC-CCCCCCcccC
Q 006909          549 GPCRGSATWPAE-KLPLWDVTID  570 (626)
Q Consensus       549 g~~l~s~~~~d~-~i~vwd~~~~  570 (626)
                      |+.+-.+.|..+ .|.++|..+.
T Consensus       327 G~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  327 GKEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             SSEEEEEEE--TTEEEEEETTTT
T ss_pred             CCEEEEEEecCCCEEEEEECCCc
Confidence            998777776444 7999999886

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.38  E-value=1.1e-11  Score=116.21  Aligned_cols=239  Identities=14%  Similarity=0.303  Sum_probs=154.4

Q ss_pred             cCcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          181 KGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       181 ~~~V~~l~fspdg~--~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      ...|+.+.|.++++  .++..+.|.+|++|.+.........+..... ........++........         ..++.
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~-~~~~~~~~lr~p~~~~~~---------~~vea  153 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEE-GPPGTITSLRLPVEGRHD---------LEVEA  153 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeecccccccccccccc-CCCCccceeeceeecccc---------ceeee
Confidence            34688889988765  5666678999999998764332211100000 001111111111111111         11123


Q ss_pred             CCceeec-cCccceEEEEEcCCCeEEEEeCCCcEEEeccCC-CeeeEeec--------CCCCeEEEEEeeCCCCEEEEEe
Q 006909          259 SPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD--------HHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       259 ~~~~~~~-~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~--------~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                      .|.+.+. +|+-.|++|.++.|+..+.++.|-.|.+|+++- .++.....        ...-|++..|+|...+.|+-.+
T Consensus       154 ~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  154 SPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence            3444443 799999999999998555556778999999863 33333322        3346899999998888999999


Q ss_pred             CCCcEEEEeCCCCeEEE-----------------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEee
Q 006909          329 IDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF  391 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~-----------------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  391 (626)
                      ..|+|++-|++...+..                 +...-..|..+.|+++|+++++-.. -++++||+.....+......
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v  312 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV  312 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence            99999999998644321                 1112245888999999999987543 58999999877766666665


Q ss_pred             ccccccC------CCC---eEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          392 HDRKKTS------GNK---ITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       392 ~~~~~~~------~~~---i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      +...+..      ...   -..++|+.++ .++++|+..+.++++++..
T Consensus       313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  313 HEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             hHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCC
Confidence            5432211      112   2357888887 6999999999999999553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.37  E-value=3.3e-10  Score=119.43  Aligned_cols=201  Identities=18%  Similarity=0.258  Sum_probs=137.2

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEE-EeCCC--cE
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDG--KV  333 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~s~dg--~v  333 (626)
                      .+.+..+...+...+|+|+| +|+.++.+   ..|++||+.+++......+...+.+++|+| +++.|+. .+.++  .|
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDI  260 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccE
Confidence            34455566678899999998 66655543   479999999887665555666677899999 8887664 44444  58


Q ss_pred             EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      ++||+.++....+..+........|+|+|+.|+..+. .+  .|+++++.+....  .+...      ...+..+.|+|+
T Consensus       261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--~l~~~------~~~~~~~~~spd  332 (417)
T TIGR02800       261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--RLTFR------GGYNASPSWSPD  332 (417)
T ss_pred             EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecC------CCCccCeEECCC
Confidence            9999998877776666655667899999998887654 33  5777777665432  22222      245677899999


Q ss_pred             CCcEEEEEeCCC---cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc---cEEEEECCC
Q 006909          411 ESQRIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYDE  473 (626)
Q Consensus       411 ~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg---~I~iwd~~~  473 (626)
                      | .+++.++.++   .|.+||+.........  .........|+|+|++|+..+.++   .+++.+...
T Consensus       333 g-~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       333 G-DLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             C-CEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            8 5777766665   7888887653222211  122344568999999998877654   455655443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.37  E-value=1.8e-11  Score=121.06  Aligned_cols=162  Identities=20%  Similarity=0.391  Sum_probs=115.8

Q ss_pred             cCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          181 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       181 ~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      +..|+|++|-|.+. .++.+-.+|.+.+||.......     ...........+...+...            .......
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~-----t~p~~~~~k~~~~f~i~t~------------ksk~~rN  281 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA-----TAPSYQALKDGDQFAILTS------------KSKKTRN  281 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccC-----CCCcccccCCCCeeEEeee------------eccccCC
Confidence            47899999999655 4555567899999987421000     0000000000000000000            0001124


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      |+..+.--.+.|+..+|+||| +|++.+.||.++|+|..+.+.+..+. --+...|++|+| |+++|++|+.|.-|.||.
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwS  360 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWS  360 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEE
Confidence            555555556799999999998 99999999999999999888777664 456789999999 999999999999999999


Q ss_pred             CCCCeEEE-eccCCCCeEEEEEee
Q 006909          338 VCEKRVVD-WADVRDVISAICYIP  360 (626)
Q Consensus       338 ~~~~~~~~-~~~~~~~i~~i~~sp  360 (626)
                      +..++++. -.+|+..|+.++|.|
T Consensus       361 f~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  361 FEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccceEEEeccccccceeeEeecc
Confidence            99988876 478999999999998

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=2.8e-10  Score=119.81  Aligned_cols=202  Identities=17%  Similarity=0.186  Sum_probs=128.7

Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeC-CC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEE-EeCCCc--EE
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGK--VR  334 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~s~dg~--v~  334 (626)
                      +.+..+...+....|+|+| .|+..+. ++  .|.+||+.+++..............+|+| +++.|+. .+.+|.  |+
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEE
Confidence            3444566788899999998 5665443 33  58888998877644433334445789999 8887765 455664  88


Q ss_pred             EEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          335 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       335 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      ++|+.+++...+..+.......+|+|||+.++..+. ++  .|.++|+.+++..  .+...+      .......|+|||
T Consensus       290 ~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~--~Lt~~g------~~~~~~~~SpDG  361 (448)
T PRK04792        290 VVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS--RLTFEG------EQNLGGSITPDG  361 (448)
T ss_pred             EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EEecCC------CCCcCeeECCCC
Confidence            889998888777766666788999999998877654 34  4666676655432  222222      223456899998


Q ss_pred             CcEEEEEeCCCc--EEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC-c--cEEEEECCCC
Q 006909          412 SQRIMITSEDSK--LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-C--RVYVWNYDEL  474 (626)
Q Consensus       412 ~~~l~~~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d-g--~I~iwd~~~~  474 (626)
                      ..++++...++.  |.++|+.........  .........|+|+|++|+..+.+ +  .+++++.+..
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDLETGAMQVLT--STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCCCeEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            544444444554  455676543222111  11122345799999998876643 3  4777787543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.34  E-value=1.5e-10  Score=122.09  Aligned_cols=198  Identities=16%  Similarity=0.146  Sum_probs=135.6

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      +.+..|...+.+.+|+|||++||.++.+   ..|++||+.++..                                    
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~------------------------------------  226 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR------------------------------------  226 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE------------------------------------
Confidence            4455677789999999999999987654   4799999876321                                    


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEE-EEeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~-s~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                                ..+..+...+.+++|+|++ .|+ +.+.++  .|.+||+.++.......+........|+| +++.|+..
T Consensus       227 ----------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~  295 (417)
T TIGR02800       227 ----------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFT  295 (417)
T ss_pred             ----------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEE
Confidence                      1222344556678999998 454 444444  58889998876655555555556778999 99888766


Q ss_pred             eCC-C--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC---cEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          328 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       328 s~d-g--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +.. +  .|+++|+.+++...+......+..+.|+|+|++++.++.++   .|.+||+.+.....  +. ..      ..
T Consensus       296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~--l~-~~------~~  366 (417)
T TIGR02800       296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV--LT-DT------GL  366 (417)
T ss_pred             ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE--cc-CC------CC
Confidence            543 3  58888988887766665666778889999999999988776   78888887644321  11 11      12


Q ss_pred             eEEEEEcCCCCcEEEEEeCCC---cEEEEeC
Q 006909          402 ITGIQFSRDESQRIMITSEDS---KLRILDG  429 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg---~i~iwd~  429 (626)
                      .....|+|+|. .|+.++.++   .+.+.+.
T Consensus       367 ~~~p~~spdg~-~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       367 DESPSFAPNGR-MILYATTRGGRGVLGLVST  396 (417)
T ss_pred             CCCceECCCCC-EEEEEEeCCCcEEEEEEEC
Confidence            34568999984 555554443   3444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.33  E-value=1.3e-09  Score=101.68  Aligned_cols=162  Identities=15%  Similarity=0.213  Sum_probs=119.1

Q ss_pred             CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccC-CCeeeEeec---CCCCeEEEEEeeCCCC-EEEE-EeCCCc
Q 006909          259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVFD---HHNYVTCVQFNPIDDN-YFIS-GSIDGK  332 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~---~~~~v~~~~~~p~~~~-~l~s-~s~dg~  332 (626)
                      .++.++. ...+|.++.+.++..++.  ..+.|.||... +.+.++.+.   .+..+  ++..|..+. +||. |-.-|.
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGl--C~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGL--CSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCce--EeecCCCCceEEEcCCCccce
Confidence            3444443 567899999988663333  34689999987 455666654   23333  334443333 3333 334589


Q ss_pred             EEEEeCCCCeE---EEeccCCCCeEEEEEeeCCCEEEEEecCCc-EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          333 VRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       333 v~iwd~~~~~~---~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      |.|-|+...+.   ..+..|...|.|++++.+|..+|+++..|+ |||||..++....+.-.-.     ....|.+++||
T Consensus       161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-----d~A~iy~iaFS  235 (346)
T KOG2111|consen  161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-----DRADIYCIAFS  235 (346)
T ss_pred             EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-----chheEEEEEeC
Confidence            99999977555   678899999999999999999999999996 6999999998766532222     23789999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCc
Q 006909          409 RDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      |+. .+|+++|+.|+++|+.++.
T Consensus       236 p~~-s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  236 PNS-SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CCc-cEEEEEcCCCeEEEEEeec
Confidence            997 7999999999999998653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=4.8e-10  Score=118.42  Aligned_cols=206  Identities=13%  Similarity=0.163  Sum_probs=137.3

Q ss_pred             cCCCceeeccCccceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEeCCC
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG  331 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg  331 (626)
                      .+...+.+..+...+....|+|+| .|+..+.+   ..|.+||+.+++..........+....|+| +++.|+ +.+.+|
T Consensus       187 ~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g  265 (430)
T PRK00178        187 DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDG  265 (430)
T ss_pred             CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCC
Confidence            344456666777889999999998 66655543   368999999887655444445566789999 888776 444455


Q ss_pred             --cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          332 --KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       332 --~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                        .|++||+.++....+..+........|+|+|+.++..+. +|  .|+++++.++...  .+...+      .......
T Consensus       266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--~lt~~~------~~~~~~~  337 (430)
T PRK00178        266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--RVTFVG------NYNARPR  337 (430)
T ss_pred             CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCC------CCccceE
Confidence              588889999887777766666778899999998877654 33  5677777665532  222211      2334578


Q ss_pred             EcCCCCcEEEEEeC-CC--cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC---ccEEEEECCCC
Q 006909          407 FSRDESQRIMITSE-DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL  474 (626)
Q Consensus       407 ~s~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d---g~I~iwd~~~~  474 (626)
                      |+|+|. .++..+. ++  .|.++|+.........  .........|+|||++|+..+.+   ..|++++++..
T Consensus       338 ~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        338 LSADGK-TLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             ECCCCC-EEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            999984 5555543 33  5778887643322211  12223356899999999877654   35777777543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=1.1e-10  Score=119.02  Aligned_cols=249  Identities=17%  Similarity=0.268  Sum_probs=176.2

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      .....|+.|+....|+|+||.||.++|-.+.+...       +......+...+                       -.-
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~-------d~~~~glaa~sn-----------------------Lsm   63 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTT-------DLNKSGLAAASN-----------------------LSM   63 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCC-------cccccccccccc-----------------------cch
Confidence            34578999999999999999999999998876321       000000000000                       122


Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      -+++.||.+.|..+.|+.++ .|-++..+|.|.+|-+-.|+.....   ...+.|.+++|+. +|..+...-.||.|.+=
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVG  142 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVG  142 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEE
Confidence            46788999999999999766 7889999999999999877655443   3567899999999 99999999999999888


Q ss_pred             eCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee---ee-EEeeccccccCCCCeEEEEEc----
Q 006909          337 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK---LE-KVDFHDRKKTSGNKITGIQFS----  408 (626)
Q Consensus       337 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~---~~-~~~~~~~~~~~~~~i~~l~~s----  408 (626)
                      .+.+.++....-.......+.|++|.+.++.+-.+|.+.+||..++-..   .. .+...+.....+..|..+.|.    
T Consensus       143 svdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  143 SVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             eeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            7777665543333334557899999999999999999999998754321   11 122222223334456667764    


Q ss_pred             ----CCCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          409 ----RDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       409 ----~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                          |+. -.++++...|.+.|....+ ....+..  ..-.+..+.|+++|..|+.++.+
T Consensus       223 ~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  223 QPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             ccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence                354 4799999999998876432 2222222  23567889999999999998864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=3.1e-10  Score=119.42  Aligned_cols=220  Identities=15%  Similarity=0.135  Sum_probs=136.0

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeC-CC--cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGE-DG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      +.+..+...+.+..|||||+.|+..+. ++  .|.+||+.++...                                   
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-----------------------------------  255 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-----------------------------------  255 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence            345567778999999999998887654 33  5778888763221                                   


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEE-EEeCCCc--EEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~-s~s~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                              .+..+   .+.....+|+|+| .|+ +.+.++.  |.++|+.+++......+.......+|+| +++.++..
T Consensus       256 --------~lt~~---~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~  323 (448)
T PRK04792        256 --------KVTSF---PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFT  323 (448)
T ss_pred             --------EecCC---CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEE
Confidence                    11111   2223467899998 454 5566665  7777888887655555555667889999 88887766


Q ss_pred             eC-CC--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-C--cEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          328 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       328 s~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +. ++  .|.++|+.+++...+..........+|+|+|++++..+.+ +  .|.++|+.++....  +. ..      ..
T Consensus       324 s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~--lt-~~------~~  394 (448)
T PRK04792        324 SERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV--LT-ST------RL  394 (448)
T ss_pred             ECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE--cc-CC------CC
Confidence            53 33  4777788877765544333334557899999998886653 4  45556776654321  11 11      11


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCc--EEEEeCCc-ceeeeeecCCCCCeEEEEEcC
Q 006909          402 ITGIQFSRDESQRIMITSEDSK--LRILDGVD-VIHKFKGLPKSGSQMSASFTT  452 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~--i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp  452 (626)
                      .....|+|+|..++++...++.  +.+++... ....+.  .+.+.+...+|+|
T Consensus       395 d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~--~~~g~~~~p~Wsp  446 (448)
T PRK04792        395 DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP--AGQGEVKSPAWSP  446 (448)
T ss_pred             CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc--CCCCCcCCCccCC
Confidence            2234799998544555555554  66666542 222222  2345566677776

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=1.4e-09  Score=108.73  Aligned_cols=263  Identities=14%  Similarity=0.212  Sum_probs=166.3

Q ss_pred             cEEEEEEcCCCCEEEEEe-----CC-----CcEEEEEcCCCcce-----------eeeecCCCCCccCCCCCeeeecCCC
Q 006909          183 CIWTLKFSPDGRYLASGG-----ED-----GVVRIWHVTSVAAS-----------CKSFTDDGGFGSNAKEGKIKFGKKK  241 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs-----~D-----g~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  241 (626)
                      .++++.|||-|.||.|=-     .+     -.+++|+++++...           +..|+.+..+.+-.....+.|....
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~  154 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLG  154 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecC
Confidence            688999999999998731     12     34779999883221           1122222222222222223222222


Q ss_pred             CCCceeecCCccccccCCCceeeccCccceEEEEEcCCC---eEEE-----EeCCCcEEEeccCCCeeeEeec----CCC
Q 006909          242 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLS-----CSMDKTVRMWQVGCNQCLNVFD----HHN  309 (626)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~---~l~s-----~s~d~~v~iwd~~~~~~~~~~~----~~~  309 (626)
                      +                .....-.-|...|+.+.++|.+   .+++     .+.-..|+||...-........    ...
T Consensus       155 ~----------------f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka  218 (566)
T KOG2315|consen  155 S----------------FKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA  218 (566)
T ss_pred             C----------------ccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc
Confidence            1                1111222357789999999873   4443     3555679999876322222211    222


Q ss_pred             CeEEEEEeeCCCCEEEEEeC--C---------CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEE--EecCCcEEE
Q 006909          310 YVTCVQFNPIDDNYFISGSI--D---------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHF  376 (626)
Q Consensus       310 ~v~~~~~~p~~~~~l~s~s~--d---------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~--g~~dg~i~i  376 (626)
                      .-..+.|++....+|+.++.  |         .++++.++.+..+.......++|+++.|+|+|+.+++  |..-..+.|
T Consensus       219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti  298 (566)
T KOG2315|consen  219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI  298 (566)
T ss_pred             ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence            33456787733344444433  2         3688888886566656666899999999999987766  556678999


Q ss_pred             EEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEeCCcceeeeeecCCCCCeEEEEEcCC
Q 006909          377 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTT  453 (626)
Q Consensus       377 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  453 (626)
                      ||++..-.    ..+.      .++-.++-|+|.| ++++.++.+   |.+-|||+.+.......  ....-+-+.|+||
T Consensus       299 fnlr~~~v----~df~------egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i~~~--~a~~tt~~eW~Pd  365 (566)
T KOG2315|consen  299 FNLRGKPV----FDFP------EGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLIAKF--KAANTTVFEWSPD  365 (566)
T ss_pred             EcCCCCEe----EeCC------CCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhcccc--ccCCceEEEEcCC
Confidence            99986532    1122      2677889999998 566666554   89999998763333332  3345567899999


Q ss_pred             CCEEEEEeC------CccEEEEECCCC
Q 006909          454 GKHIISIGD------DCRVYVWNYDEL  474 (626)
Q Consensus       454 g~~l~s~s~------dg~I~iwd~~~~  474 (626)
                      |.+++|++.      |+.++||++.+.
T Consensus       366 Ge~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  366 GEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             CcEEEEEeccccEEecCCeEEEEecCc
Confidence            999999874      788999999875

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=5e-10  Score=118.27  Aligned_cols=220  Identities=15%  Similarity=0.132  Sum_probs=139.1

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      +.+..|...+...+|||||+.|+..+.+   ..|.+|++.++..                                    
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~------------------------------------  235 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR------------------------------------  235 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE------------------------------------
Confidence            4555778889999999999999876643   3588888876422                                    


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEE-EEeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~-s~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                                ..+....+.+....|+|+| .|+ +.+.++  .|.+||+.++.......+........|+| +++.++..
T Consensus       236 ----------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~  304 (430)
T PRK00178        236 ----------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFT  304 (430)
T ss_pred             ----------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEE
Confidence                      1112222334568999998 554 555555  58888999887655545555566789999 88887766


Q ss_pred             eC-CC--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-C--cEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          328 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       328 s~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +. +|  .|+++|+.+++...+...........|+|+|+.++..+.. +  .|.++|+.++....  +. ..      ..
T Consensus       305 s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt-~~------~~  375 (430)
T PRK00178        305 SDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LT-DT------SL  375 (430)
T ss_pred             ECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--cc-CC------CC
Confidence            54 33  5778888877765544333334567899999999887654 3  57888887765322  11 11      11


Q ss_pred             eEEEEEcCCCCcEEEEEeCCC--cEEEEeCCcce-eeeeecCCCCCeEEEEEcC
Q 006909          402 ITGIQFSRDESQRIMITSEDS--KLRILDGVDVI-HKFKGLPKSGSQMSASFTT  452 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg--~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp  452 (626)
                      .....|+|+|..++++...++  .|.+++..... ..+.  ...+.+...+|+|
T Consensus       376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~--~~~g~~~~p~ws~  427 (430)
T PRK00178        376 DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP--TAQGEVREPSWSP  427 (430)
T ss_pred             CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc--CCCCCcCCCccCC
Confidence            224589999854444444444  45666654222 2222  2344566667765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.27  E-value=1.5e-08  Score=103.28  Aligned_cols=250  Identities=16%  Similarity=0.172  Sum_probs=158.1

Q ss_pred             cCcEEEEEEcCCCCEEEEEeC----CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          181 KGCIWTLKFSPDGRYLASGGE----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      ......++++|++++|.+...    +|.|..|++.....                  .                      
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g------------------~----------------------   75 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG------------------T----------------------   75 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT------------------E----------------------
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc------------------e----------------------
Confidence            344567889999999998876    46888888765200                  0                      


Q ss_pred             cCCCceeeccCccceEEEEEcCCC-eEEEEe-CCCcEEEeccCC-CeeeEe---ec-----------CCCCeEEEEEeeC
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-NQCLNV---FD-----------HHNYVTCVQFNPI  319 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d~~v~iwd~~~-~~~~~~---~~-----------~~~~v~~~~~~p~  319 (626)
                       -..+............++++|++ +|+++. .+|.|.++++.. +.....   +.           ......++.++| 
T Consensus        76 -L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-  153 (345)
T PF10282_consen   76 -LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-  153 (345)
T ss_dssp             -EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-
T ss_pred             -eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-
Confidence             01122222233455678889987 555554 589999999976 433322   21           234578999999 


Q ss_pred             CCCEEEEEeC-CCcEEEEeCCCCe--EEE----eccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcC--CCceeee-E
Q 006909          320 DDNYFISGSI-DGKVRIWGVCEKR--VVD----WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLE-K  388 (626)
Q Consensus       320 ~~~~l~s~s~-dg~v~iwd~~~~~--~~~----~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~--~~~~~~~-~  388 (626)
                      +++++++... ...|.+|++....  +..    ..........+.|+|+++++++.. .++.|.+|++.  .+..... .
T Consensus       154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~  233 (345)
T PF10282_consen  154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT  233 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence            9998887654 3479999987644  322    234556788999999999887765 46789999998  3322221 1


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc---ceeeeee-cCCCCCeEEEEEcCCCCEEEEEe-CC
Q 006909          389 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKG-LPKSGSQMSASFTTTGKHIISIG-DD  463 (626)
Q Consensus       389 ~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s-~d  463 (626)
                      +...............|+++|||..++++....+.|.+|++..   ....... .........+.++|+|++|+++. .+
T Consensus       234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred             eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence            1111111111236889999999854444555678999999731   1222211 21344589999999999999887 45


Q ss_pred             ccEEEEECC
Q 006909          464 CRVYVWNYD  472 (626)
Q Consensus       464 g~I~iwd~~  472 (626)
                      +.|.+|+++
T Consensus       314 ~~v~vf~~d  322 (345)
T PF10282_consen  314 NTVSVFDID  322 (345)
T ss_dssp             TEEEEEEEE
T ss_pred             CeEEEEEEe
Confidence            789999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=5.5e-10  Score=111.59  Aligned_cols=208  Identities=9%  Similarity=0.087  Sum_probs=146.3

Q ss_pred             cCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEe----------------------------ec---------
Q 006909          266 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNV----------------------------FD---------  306 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~----------------------------~~---------  306 (626)
                      .|...-+.|..+|||  .+++|...-.|++||+.+-..-..                            +.         
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            577888999999998  577888889999999864321100                            00         


Q ss_pred             ---CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccC-CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC
Q 006909          307 ---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGN  382 (626)
Q Consensus       307 ---~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~  382 (626)
                         .+..-..++++..... |++++....|+-+++..|+.+..... .+.++++..++...+|++|+.+|.+.+||.+..
T Consensus       129 ~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence               0111233444432333 44444456788889999987765444 488999999999999999999999999999876


Q ss_pred             ceeeeEEeeccccccCC-----CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeee-eecCCCCCeEEEEEcCC--C
Q 006909          383 DLKLEKVDFHDRKKTSG-----NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFTTT--G  454 (626)
Q Consensus       383 ~~~~~~~~~~~~~~~~~-----~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~--g  454 (626)
                      .... .+........+.     ..|+++.|+.+| -.+++|+.+|.|.|||++.....+ +.+...-+|..+.|-+.  +
T Consensus       208 srv~-~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q  285 (703)
T KOG2321|consen  208 SRVG-TLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ  285 (703)
T ss_pred             hhhe-eeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence            5432 232222222222     349999999997 789999999999999998544433 34556778999999765  4


Q ss_pred             CEEEEEeCCccEEEEECCCCCCC
Q 006909          455 KHIISIGDDCRVYVWNYDELCFP  477 (626)
Q Consensus       455 ~~l~s~s~dg~I~iwd~~~~~~~  477 (626)
                      +.|++. +...++|||-.++...
T Consensus       286 ~~v~S~-Dk~~~kiWd~~~Gk~~  307 (703)
T KOG2321|consen  286 NKVVSM-DKRILKIWDECTGKPM  307 (703)
T ss_pred             ceEEec-chHHhhhcccccCCce
Confidence            555554 4578999999987443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.25  E-value=5.4e-10  Score=105.03  Aligned_cols=253  Identities=15%  Similarity=0.161  Sum_probs=174.6

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      .+.+.+.++||.+.|+....-|-..-+.+.+.|.+++||--.+...                                  
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q----------------------------------   58 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ----------------------------------   58 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc----------------------------------
Confidence            3445677889999999999999888899999999999996443110                                  


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC----CCeeeEee-cCCCCeEEEEEeeCCCCE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG----CNQCLNVF-DHHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~----~~~~~~~~-~~~~~v~~~~~~p~~~~~  323 (626)
                              .- .........+++++.+.+.. .|+.+-..|++.-+.+.    .....+.. .|...+..+-|+. ....
T Consensus        59 --------~w-psI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~  128 (404)
T KOG1409|consen   59 --------YW-PSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEW  128 (404)
T ss_pred             --------cC-chhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC-Ccee
Confidence                    00 01112345788899998876 78888888988887553    22333333 4889999999988 7888


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          324 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      +++.+.|..+.---.+.+..+.-.......+++.+.-.  +..+|...|.+..-.+....+..     ..+...|.+.++
T Consensus       129 V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~-----i~~~~~h~~~~~  201 (404)
T KOG1409|consen  129 VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQL-----ITTFNGHTGEVT  201 (404)
T ss_pred             EEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCce-----EEEEcCcccceE
Confidence            99999887665333333332211111111111222111  55667777777666554333322     223455679999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +++|.+.. .+++++..|..+.+||+. .....+....|...|..+..-+.-+.+++++.||.|-+|+.+..
T Consensus       202 ~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  202 CLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             EEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            99999985 799999999999999975 33344555568888988888888899999999999999999865

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.25  E-value=2.1e-09  Score=106.18  Aligned_cols=324  Identities=14%  Similarity=0.125  Sum_probs=194.6

Q ss_pred             CccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC---------------
Q 006909          267 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG---------------  331 (626)
Q Consensus       267 h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---------------  331 (626)
                      ..-++..+.|||.|.++....-..|.+|.-..+..+..+.|. .|..+.|+| .+++|.+=+..+               
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n  108 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP-DVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKN  108 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhheeeeecC-CceecccCc-ccceeeeeccCCccChhhccCCccccC
Confidence            556889999999996555556667999999887777777665 489999999 999999865443               


Q ss_pred             cEEEEeCCCCeEEEeccCC-CC--eE-EEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909          332 KVRIWGVCEKRVVDWADVR-DV--IS-AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~~~~-~~--i~-~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  407 (626)
                      .+.+||+.++.++...... .+  .. -+.|+.+.+++|-. ....++|+++ +......  .+.   ......|....|
T Consensus       109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~--p~~---~lr~~gi~dFsi  181 (561)
T COG5354         109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEH--PFK---NLRPVGILDFSI  181 (561)
T ss_pred             ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccC--chh---hccccceeeEEe
Confidence            4999999999988644332 22  22 57888888877655 4457999997 3332211  111   111357888999


Q ss_pred             cCCC-CcEEEE-----EeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEe-----------CCccEEE
Q 006909          408 SRDE-SQRIMI-----TSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIG-----------DDCRVYV  468 (626)
Q Consensus       408 s~~~-~~~l~~-----~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-----------~dg~I~i  468 (626)
                      +|.+ ...|+.     ....+.+++|.+...  +..-..  ....-..+.|.+.|++|+.--           ...++++
T Consensus       182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl  259 (561)
T COG5354         182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL  259 (561)
T ss_pred             cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--EeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence            9974 222333     355678999986521  111111  122234678899998876421           1357888


Q ss_pred             EECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCC
Q 006909          469 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSND  548 (626)
Q Consensus       469 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~d  548 (626)
                      +++.....+......           +.+...+|.|.+..+..+.+-. .......+. .+.-.....+..-..+.|||.
T Consensus       260 ~~~~e~~i~V~~~~~-----------~pVhdf~W~p~S~~F~vi~g~~-pa~~s~~~l-r~Nl~~~~Pe~~rNT~~fsp~  326 (561)
T COG5354         260 LRITERSIPVEKDLK-----------DPVHDFTWEPLSSRFAVISGYM-PASVSVFDL-RGNLRFYFPEQKRNTIFFSPH  326 (561)
T ss_pred             Eeecccccceecccc-----------ccceeeeecccCCceeEEeccc-ccceeeccc-ccceEEecCCcccccccccCc
Confidence            988865333332222           3444555555555444333110 000000000 011111222223455679999


Q ss_pred             CCcccccCCCC--CCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEec------CCceEeeeeec
Q 006909          549 GPCRGSATWPA--EKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAG------CDGMIKTFHNY  620 (626)
Q Consensus       549 g~~l~s~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g------~Dg~Irvw~~~  620 (626)
                      +++++.++.+.  +.+.+||.....          ...-.+....+....+++ ||+++-++.      .|..|+|||++
T Consensus       327 ~r~il~agF~nl~gni~i~~~~~rf----------~~~~~~~~~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         327 ERYILFAGFDNLQGNIEIFDPAGRF----------KVAGAFNGLNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             ccEEEEecCCccccceEEeccCCce----------EEEEEeecCCceEeeccC-CceEEEecCCCcccccCcceEEEEec
Confidence            99998876532  577888876541          001112223333334566 898877764      58899999999


Q ss_pred             Ccccc
Q 006909          621 GLPIR  625 (626)
Q Consensus       621 g~p~~  625 (626)
                      |-++.
T Consensus       396 g~~~f  400 (561)
T COG5354         396 GAKVF  400 (561)
T ss_pred             Cchhh
Confidence            98864

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.24  E-value=1.3e-09  Score=109.72  Aligned_cols=139  Identities=15%  Similarity=0.206  Sum_probs=114.3

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEE
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAI  356 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i  356 (626)
                      .++-|...|.|.+|++..|+....+.   |.+.|.++.++. +-..|.+++.|+.+..|+...+.... +...+..+.++
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl  150 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL  150 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence            68888899999999999999988874   899999999998 88899999999999999999888665 56677789999


Q ss_pred             EEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC-----CCcEEEEEeCCCcEEEEeC
Q 006909          357 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD-----ESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       357 ~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-----~~~~l~~~s~dg~i~iwd~  429 (626)
                      +++|||+.+++++  +.|++||+++.+....       ..+|.++|.+++|.-+     |..+|.+...+..+.+|-.
T Consensus       151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~-------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  151 CISPDGKILLTAS--RQIKVLDIETKEVVIT-------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             EEcCCCCEEEecc--ceEEEEEccCceEEEE-------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            9999999998876  5899999998876432       4445799999999776     5344445555666777753

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.23  E-value=1.8e-09  Score=106.73  Aligned_cols=319  Identities=16%  Similarity=0.160  Sum_probs=188.6

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      -.-++..++|||.|.+|++....| |.+|.-.....                                            
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~--------------------------------------------   65 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK--------------------------------------------   65 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhh--------------------------------------------
Confidence            345788999999999999987766 88997665321                                            


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCC---------------CcEEEeccCCCeeeEeec-CCCC--eE-EEEEeeC
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMD---------------KTVRMWQVGCNQCLNVFD-HHNY--VT-CVQFNPI  319 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---------------~~v~iwd~~~~~~~~~~~-~~~~--v~-~~~~~p~  319 (626)
                       +..+  ....|..+.|+|.+ +|.+-+..               ..+.+||+.++..+..+. ...+  .+ -+.|+- 
T Consensus        66 -l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-  141 (561)
T COG5354          66 -LVRF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-  141 (561)
T ss_pred             -eeee--ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-
Confidence             1111  12457777777776 66654332               359999999999999885 2222  33 567877 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEE--eccC-CCCeEEEEEeeCC--CEEEE-----EecCCcEEEEEcCCCceeeeEE
Q 006909          320 DDNYFISGSIDGKVRIWGVCEKRVVD--WADV-RDVISAICYIPDG--KGFIV-----GSITGTCHFYKASGNDLKLEKV  389 (626)
Q Consensus       320 ~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~-~~~i~~i~~sp~g--~~l~~-----g~~dg~i~i~d~~~~~~~~~~~  389 (626)
                      +.++++-. ....++|+++ ++....  .... ...|....|+|.+  ..|+.     +...+.+++|.+..+.......
T Consensus       142 ~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~  219 (561)
T COG5354         142 DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN  219 (561)
T ss_pred             cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee
Confidence            77766554 3457999997 443332  1222 3568888899964  33444     4567789999988555443322


Q ss_pred             eeccccccCCCCeEEEEEcCCCCcEEEEEe----------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEE
Q 006909          390 DFHDRKKTSGNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS  459 (626)
Q Consensus       390 ~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  459 (626)
                      -+.       ..-..+.|.+.|..+++-.-          ....++|+++...-..... ...++|...+|.|.++.+++
T Consensus       220 lfk-------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~v  291 (561)
T COG5354         220 LFK-------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAV  291 (561)
T ss_pred             eEe-------ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeE
Confidence            221       22346778888743333221          1256788886632222221 35789999999999887665


Q ss_pred             Ee--CCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcc-cCC
Q 006909          460 IG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWI-RDS  536 (626)
Q Consensus       460 ~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~-~~~  536 (626)
                      .+  .+..+-++|+.+...-..  .........|+|.+.++.++           .-+.+.+.+-+|+........ .-.
T Consensus       292 i~g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fsp~~r~il~a-----------gF~nl~gni~i~~~~~rf~~~~~~~  358 (561)
T COG5354         292 ISGYMPASVSVFDLRGNLRFYF--PEQKRNTIFFSPHERYILFA-----------GFDNLQGNIEIFDPAGRFKVAGAFN  358 (561)
T ss_pred             EecccccceeecccccceEEec--CCcccccccccCcccEEEEe-----------cCCccccceEEeccCCceEEEEEee
Confidence            54  678999999987511111  11111223455555554443           333333334444442211111 001


Q ss_pred             CcccCCccccCCCCcccccC-----CCCCCCCCCCcccC
Q 006909          537 ERFSLGSWFSNDGPCRGSAT-----WPAEKLPLWDVTID  570 (626)
Q Consensus       537 ~~~~~~~~~s~dg~~l~s~~-----~~d~~i~vwd~~~~  570 (626)
                      +....-..|||||+++.+++     ..|..|.+|++...
T Consensus       359 ~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         359 GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            11123346999999776653     23557889988754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=8.6e-09  Score=107.74  Aligned_cols=203  Identities=11%  Similarity=0.081  Sum_probs=124.6

Q ss_pred             eeccCccceEEEEEcCCC-e--EE-EEeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC-CC----
Q 006909          263 ELHGHKGDVLDLAWSNSN-Y--LL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-DG----  331 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~-~--l~-s~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg----  331 (626)
                      .+......+..-+|+||| .  ++ +...++  .|.+.++.+++........+.....+|+| +|+.|+..+. +|    
T Consensus       179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di  257 (428)
T PRK01029        179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRYGNPDL  257 (428)
T ss_pred             EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCCCCcce
Confidence            344445556777999997 3  32 444443  57777888887665555556666789999 9988876653 22    


Q ss_pred             cEEEEeCCC---CeEEEeccC-CCCeEEEEEeeCCCEEEEEe-cCCcEEEEE--cCCCceeeeEEeeccccccCCCCeEE
Q 006909          332 KVRIWGVCE---KRVVDWADV-RDVISAICYIPDGKGFIVGS-ITGTCHFYK--ASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       332 ~v~iwd~~~---~~~~~~~~~-~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      .+.+|++..   +....+... .......+|+|||+.|+..+ .+|...+|.  +.........+...      ...+..
T Consensus       258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~------~~~~~~  331 (428)
T PRK01029        258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK------YRNSSC  331 (428)
T ss_pred             eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC------CCCccc
Confidence            344467654   333333333 23456789999999888765 466555554  43211111112111      245678


Q ss_pred             EEEcCCCCcEEEEEeC-C--CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC---CccEEEEECCCC
Q 006909          405 IQFSRDESQRIMITSE-D--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYVWNYDEL  474 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~---dg~I~iwd~~~~  474 (626)
                      ..|+||| ++|+..+. +  ..|.+||+.......... ....+....|+|||++|+..+.   ...|+++|+.++
T Consensus       332 p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        332 PAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             eeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            8999998 45555443 3  468999976443222111 2345677899999998875443   357889998875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.18  E-value=3.2e-09  Score=108.18  Aligned_cols=281  Identities=15%  Similarity=0.165  Sum_probs=162.4

Q ss_pred             EEEEeCC----CcEEEecc--CCCeee--EeecCCCCeEEEEEeeCCCCEEEEEeC----CCcEEEEeCCC--CeEEE--
Q 006909          282 LLSCSMD----KTVRMWQV--GCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSI----DGKVRIWGVCE--KRVVD--  345 (626)
Q Consensus       282 l~s~s~d----~~v~iwd~--~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~s~----dg~v~iwd~~~--~~~~~--  345 (626)
                      ++.|+..    +.|.+|++  .+++..  ..+........++++| ++++|+++..    ++.|..|.+..  +.+..  
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4555555    68888887  444443  2233555677889999 8899988876    46888888765  34332  


Q ss_pred             -eccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEE---eecc----ccccCCCCeEEEEEcCCCCcEEE
Q 006909          346 -WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKV---DFHD----RKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       346 -~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~---~~~~----~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                       ..........++++|++++|+++. .+|.+.+|++..........   ...+    ..+.......++.|+|+|..+++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence             222455667899999999999886 48999999998753333221   1111    11223456789999999844444


Q ss_pred             EEeCCCcEEEEeCCcce------eeeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECC--CCCCCCCCccCCccc
Q 006909          417 ITSEDSKLRILDGVDVI------HKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYD--ELCFPSSKQKNSVRS  487 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~--~~~~~~~~~~~~~~~  487 (626)
                      +.-....|.+|+.....      ..+. .........+.|+|++++++...+ +++|.++++.  ++............ 
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~-  238 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP-  238 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE-
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc-
Confidence            44455789999875322      1222 345567889999999999877664 6889999998  32110000000000 


Q ss_pred             eeeeccCCcEEEEecCCCCcccccccCCCccccCccccc------cCCCCcccCCCcccCCccccCCCCcccccCCCCCC
Q 006909          488 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN------LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK  561 (626)
Q Consensus       488 ~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~------~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~  561 (626)
                       ..+......-+++.+|+|..|+......-.  +...+.      +.........+..-..++++|||++|+++...++.
T Consensus       239 -~~~~~~~~~~~i~ispdg~~lyvsnr~~~s--I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  239 -EGFTGENAPAEIAISPDGRFLYVSNRGSNS--ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT  315 (345)
T ss_dssp             -TTSCSSSSEEEEEE-TTSSEEEEEECTTTE--EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             -ccccccCCceeEEEecCCCEEEEEeccCCE--EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence             000011122344445555554433322110  000011      11111223334456788999999999988876788


Q ss_pred             CCCCCcc
Q 006909          562 LPLWDVT  568 (626)
Q Consensus       562 i~vwd~~  568 (626)
                      |.++++.
T Consensus       316 v~vf~~d  322 (345)
T PF10282_consen  316 VSVFDID  322 (345)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            8888664

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.17  E-value=3.7e-08  Score=111.19  Aligned_cols=283  Identities=11%  Similarity=0.213  Sum_probs=171.2

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceee-eecC-----CCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCK-SFTD-----DGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      -...|.+++||||+..||....+++|.+-.-. ...... ....     ......++......|-....+.+.....+. 
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p-  196 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP-  196 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC-
Confidence            35689999999999999999999988876432 111111 1111     111111222221222111111110000000 


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeC---C---CcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEE
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---D---KTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~---d---~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~  325 (626)
                       .........+. +...-..|+|-.|| ++++.+.   .   ..++||+-+ |....+-. -.+--.+++|.| .|+++|
T Consensus       197 -~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA  272 (928)
T PF04762_consen  197 -TVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIA  272 (928)
T ss_pred             -CCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEE
Confidence             00000112233 55567789999999 6666553   2   579999977 55444333 223345789999 999999


Q ss_pred             EEeC---CCcEEEEeCCCCeEEE----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeecccccc
Q 006909          326 SGSI---DGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT  397 (626)
Q Consensus       326 s~s~---dg~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~  397 (626)
                      +...   ...|.+|.-++-+--.    .......|..+.|++++..|++...|. |.+|-..+...-.+ .+.+..    
T Consensus       273 ~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~----  347 (928)
T PF04762_consen  273 SSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS----  347 (928)
T ss_pred             EEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC----
Confidence            8765   3457777755433222    224456799999999999999987665 99999988776544 233322    


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC------c--------ceeeeee---------------------cCCC
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV------D--------VIHKFKG---------------------LPKS  442 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~------~--------~~~~~~~---------------------~~~~  442 (626)
                       ...+..+.|+|..+..|.+.+.+|.+..++..      .        ....+.+                     ..-.
T Consensus       348 -~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~  426 (928)
T PF04762_consen  348 -SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELP  426 (928)
T ss_pred             -CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCC
Confidence             13455599999877778888877776655411      0        0001100                     1135


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          443 GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       443 ~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+|..++|++++..+++-..||.|.+|.....
T Consensus       427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            68999999999988999999999999996654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=1.4e-07  Score=90.31  Aligned_cols=252  Identities=15%  Similarity=0.195  Sum_probs=169.2

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCC--CcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTS--VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~D---g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      -++.+.++-|+|+|++++|.++-.+   |.|-.|.+..  +.....                                  
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l----------------------------------   81 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL----------------------------------   81 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe----------------------------------
Confidence            3678889999999999999988654   6677777664  111100                                  


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eEEEEeC-CCcEEEeccCC-Cee---eEeecCCCC----------eEEEEE
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGC-NQC---LNVFDHHNY----------VTCVQF  316 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~-d~~v~iwd~~~-~~~---~~~~~~~~~----------v~~~~~  316 (626)
                             ......+  .+-..+++++++ +|+++.. .|.|.++-+.. |..   +..+.|.+.          +.+..+
T Consensus        82 -------n~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~  152 (346)
T COG2706          82 -------NRQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF  152 (346)
T ss_pred             -------eccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee
Confidence                   0111112  223778889988 6666554 57899998855 433   233445554          889999


Q ss_pred             eeCCCCEEEEEeCC-CcEEEEeCCCCeEEE----eccCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcCCCceeeeEEe
Q 006909          317 NPIDDNYFISGSID-GKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVD  390 (626)
Q Consensus       317 ~p~~~~~l~s~s~d-g~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~  390 (626)
                      .| +++++++.... -.|.+|++..+.+..    ..........|.|+|++++..+.++ +++|.+|........+..++
T Consensus       153 tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ  231 (346)
T COG2706         153 TP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ  231 (346)
T ss_pred             CC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence            99 99999887642 369999999877553    2244566889999999999887654 88999999987543333332


Q ss_pred             ecccc---ccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEeCCcc---eeeeee-cCCCCCeEEEEEcCCCCEEEEEeC
Q 006909          391 FHDRK---KTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDV---IHKFKG-LPKSGSQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       391 ~~~~~---~~~~~~i~~l~~s~~~~~~l~~~s~-dg~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~  462 (626)
                      .....   -........|..++|| ++|.++.. ...|.++.+...   ...... ..+........|+|.|++|+++..
T Consensus       232 ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         232 TIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             eeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence            22111   1223567789999998 56666544 357888875522   222222 223445788999999999999987


Q ss_pred             C-ccEEEEECCCC
Q 006909          463 D-CRVYVWNYDEL  474 (626)
Q Consensus       463 d-g~I~iwd~~~~  474 (626)
                      + ..|.+|.++..
T Consensus       311 ~sd~i~vf~~d~~  323 (346)
T COG2706         311 KSDNITVFERDKE  323 (346)
T ss_pred             CCCcEEEEEEcCC
Confidence            5 57999988754

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.16  E-value=1.3e-09  Score=116.43  Aligned_cols=185  Identities=12%  Similarity=0.173  Sum_probs=148.6

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeE-----EEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEEeccCCCC
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-----CVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDV  352 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~-----~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~  352 (626)
                      +..++.++.+..+.+||...+.......+...+.     -+.+++ +.-++++|+.-+.|.+|+... .......+|.+.
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            3478888888999999999888777776555322     223455 667899999999999999864 334468899999


Q ss_pred             eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-c
Q 006909          353 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-D  431 (626)
Q Consensus       353 i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~  431 (626)
                      |.++.++-||+++++.+.|.++++|++.+.+...      ...-+|..+|..+.|.|+   .+++++.|-+.++|+.. .
T Consensus       178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~  248 (967)
T KOG0974|consen  178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGT  248 (967)
T ss_pred             eEEEEEccCCcEEEEEecCcceeeeecccccccC------cccccccceeEEEEeccc---eeEEeccceEEEEEecccc
Confidence            9999999999999999999999999999877643      123345689999999997   89999999999999754 2


Q ss_pred             ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          432 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       432 ~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ....+..+ ....+..++..++...++|++.|+.+++|++.+.
T Consensus       249 ~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  249 QLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            23344443 3567899999999999999999999999998654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.13  E-value=1.1e-07  Score=93.21  Aligned_cols=172  Identities=16%  Similarity=0.168  Sum_probs=132.6

Q ss_pred             CCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC-cEEEEeCCCCeEEEeccCCCCeEEE
Q 006909          278 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-KVRIWGVCEKRVVDWADVRDVISAI  356 (626)
Q Consensus       278 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~i~~i  356 (626)
                      +..+++..|. |.+.|.+...+-.+ .+++...|.-..+.- +++-++.|..|| .+-|+|..+++.......-+.|.++
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~i-qv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av  407 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSI-QVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAV  407 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeE-EcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEE
Confidence            4447777766 66777777655444 345666788888887 777899999999 8999999999999988999999999


Q ss_pred             EEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEeCCcc
Q 006909          357 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS----KLRILDGVDV  432 (626)
Q Consensus       357 ~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg----~i~iwd~~~~  432 (626)
                      ..+|+|++++++.....+-++|+.++.....       .+...+-|+.+.|+|++ +++|-+--+|    .|+++|....
T Consensus       408 ~vs~dGK~~vvaNdr~el~vididngnv~~i-------dkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         408 KVSPDGKKVVVANDRFELWVIDIDNGNVRLI-------DKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             EEcCCCcEEEEEcCceEEEEEEecCCCeeEe-------cccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCC
Confidence            9999999999999999999999998876433       11223789999999997 7888877665    6899997643


Q ss_pred             eeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909          433 IHKFKGLPKSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       433 ~~~~~~~~~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      . .+......+.-.+-+|.|++++|.--+
T Consensus       480 K-iy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         480 K-IYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             e-EEEecCCcccccCcccCCCCcEEEEEe
Confidence            2 233322444556778999999987654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=1.6e-08  Score=105.78  Aligned_cols=179  Identities=11%  Similarity=0.032  Sum_probs=111.5

Q ss_pred             CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCE--E-EEEeCCC--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC
Q 006909          289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY--F-ISGSIDG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGK  363 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~--l-~s~s~dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~  363 (626)
                      ..|.+.|...+...........+..-+|+| +++.  + ++...+|  .|.+.++.+++...+....+......|+|||+
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence            357777877665544444555677889999 8864  2 2333333  58888999888777766677777889999999


Q ss_pred             EEEEEec-CC----cEEEEEcCCCce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE--eCCc--c-
Q 006909          364 GFIVGSI-TG----TCHFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD--V-  432 (626)
Q Consensus       364 ~l~~g~~-dg----~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw--d~~~--~-  432 (626)
                      .|+..+. +|    .+..|++..+.. ....+....     .......+|+|||..++++...+|...||  ++..  . 
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~-----~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~  318 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA-----FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS  318 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCC-----CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence            8887653 23    233466654211 111111110     12345689999985444444456755555  4321  1 


Q ss_pred             eeeeeecCCCCCeEEEEEcCCCCEEEEEeCC---ccEEEEECCCCC
Q 006909          433 IHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELC  475 (626)
Q Consensus       433 ~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d---g~I~iwd~~~~~  475 (626)
                      ...+..  ....+....|||||++|+..+.+   ..|++||+.++.
T Consensus       319 ~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        319 PRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             eEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            222222  33466788999999999876643   479999998873

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.09  E-value=2.1e-08  Score=99.71  Aligned_cols=271  Identities=11%  Similarity=0.025  Sum_probs=153.1

Q ss_pred             CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC----------CCcEEEEeCCCCeEEEeccCCC-------
Q 006909          289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI----------DGKVRIWGVCEKRVVDWADVRD-------  351 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~-------  351 (626)
                      ++|.+.|..+++.+.++........+ ++| +++.|+.+..          +..|.+||..+.+.+.......       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            78999999999999988754444455 999 8888777655          7899999999988876544322       


Q ss_pred             -CeEEEEEeeCCCEEEEEe-c-CCcEEEEEcCCCceeeeEEeeccc-cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909          352 -VISAICYIPDGKGFIVGS-I-TGTCHFYKASGNDLKLEKVDFHDR-KKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  427 (626)
Q Consensus       352 -~i~~i~~sp~g~~l~~g~-~-dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw  427 (626)
                       ....++++|||+++++.. . +..+.+.|+.+.+...+ +...+. .......-..+..+.||....++-..+|+...=
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e-i~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM-MDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE-EeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence             234789999999999876 3 68999999998876543 221110 000001111222334443222233333332210


Q ss_pred             eCCcceeeeeecCCCCCe-EEEEEcC-CCCEEEEEeCCccEEEEECCCCCCCCCCccCCcc---ceeeeccCCcEEEEec
Q 006909          428 DGVDVIHKFKGLPKSGSQ-MSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR---SCEHFFSEGVSVAVQW  502 (626)
Q Consensus       428 d~~~~~~~~~~~~~~~~v-~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~~~~g~~~av~~  502 (626)
                          ....+..  ...++ ..-.|++ +|+++....+ |+|++-|+.+.............   .-..+.|.|... +++
T Consensus       184 ----~~~vf~~--~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~-ia~  255 (352)
T TIGR02658       184 ----PTEVFHP--EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ-VAY  255 (352)
T ss_pred             ----eeeeecC--CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee-EEE
Confidence                0011111  00000 0003455 8888887776 99999997654222111111000   011355655443 677


Q ss_pred             CCCCcccccccCCCcc-------ccCccccccCCCC-cccCCCcccCCccccCCCC-cccccCCCCCCCCCCCcccC
Q 006909          503 PGIGTEQKSLCSSSLR-------DCSQKWDNLETAP-WIRDSERFSLGSWFSNDGP-CRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       503 s~~~~~l~~~~~~~~~-------~~~~~w~~~~~~~-~~~~~~~~~~~~~~s~dg~-~l~s~~~~d~~i~vwd~~~~  570 (626)
                      ++++..++.+......       ..+.+.+...... ....-+..+.+++++|||+ .+.+..+..+.|.+.|..++
T Consensus       256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            7777777764321110       0111112211111 1112345678999999999 77666655678999998877

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.8e-08  Score=100.66  Aligned_cols=317  Identities=14%  Similarity=0.192  Sum_probs=190.4

Q ss_pred             ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC-----------CCcEEEEe
Q 006909          270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-----------DGKVRIWG  337 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-----------dg~v~iwd  337 (626)
                      .-+-+.|||-| +|+|--. .-|.+|--.+...++.|.|++ |.-+.|+| +.+||++=+.           ...+.|||
T Consensus       212 Tetyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeeEEecCCceEEEEEec-cceeeecCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEE
Confidence            34678999999 6665544 458999888777788887765 88999999 9999998653           24699999


Q ss_pred             CCCCeEEEeccC----CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          338 VCEKRVVDWADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       338 ~~~~~~~~~~~~----~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      +++|.+......    ...-.-+.||.|++++|.-.. ..|.||+.....+. .      .+......|....|+|.+ +
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~ll-d------~Kslki~gIr~FswsP~~-~  359 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLL-D------KKSLKISGIRDFSWSPTS-N  359 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeee-c------ccccCCccccCcccCCCc-c
Confidence            999987653322    122334689999999998776 57899987653321 1      122223678899999985 5


Q ss_pred             EEEEEeCC-----CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe----------CCccEEEEECCCCCCCC
Q 006909          414 RIMITSED-----SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG----------DDCRVYVWNYDELCFPS  478 (626)
Q Consensus       414 ~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s----------~dg~I~iwd~~~~~~~~  478 (626)
                      +||-=...     ..+.+..+......-...-+.-.-..+.|-.+|.+|+.--          .-..+-|+.+.....+.
T Consensus       360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv  439 (698)
T KOG2314|consen  360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV  439 (698)
T ss_pred             eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence            55543221     2334443322111111100111223456777888887532          12245566665542221


Q ss_pred             CCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC---CCcc-cCCCcccCCccccCCCCcccc
Q 006909          479 SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET---APWI-RDSERFSLGSWFSNDGPCRGS  554 (626)
Q Consensus       479 ~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~---~~~~-~~~~~~~~~~~~s~dg~~l~s  554 (626)
                                ...--...+++.+|-|.|..++.+.......++.+...-..   ..+. .-...+...+.|||.|++++.
T Consensus       440 ----------e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvv  509 (698)
T KOG2314|consen  440 ----------EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVV  509 (698)
T ss_pred             ----------eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEE
Confidence                      11222355788899999988887766555444443333211   1111 112245788899999998776


Q ss_pred             cCCC--CCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccc----cccccccceEEEEecC------CceEeeeeecCc
Q 006909          555 ATWP--AEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV----RAISATWGLVIVTAGC------DGMIKTFHNYGL  622 (626)
Q Consensus       555 ~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~dg~~ivt~g~------Dg~Irvw~~~g~  622 (626)
                      +..-  .+.+..+|....           ..+  ...+..|-    ..+.| .|+|++|++.      |.--|+|...|-
T Consensus       510 a~l~s~~g~l~F~D~~~a-----------~~k--~~~~~eh~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  510 AALVSRRGDLEFYDTDYA-----------DLK--DTASPEHFAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             EEecccccceEEEecchh-----------hhh--hccCccccccccceECC-CCCEEEEeeehhhhccccceEEEEeecH
Confidence            5431  466777777643           111  22233332    23445 5999999874      444567776663

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.07  E-value=9.7e-09  Score=94.83  Aligned_cols=197  Identities=14%  Similarity=0.166  Sum_probs=134.3

Q ss_pred             ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE--ee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEE
Q 006909          270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVV  344 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~--~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~  344 (626)
                      ...++.|++.+ .++++-.+|.+.+-+........  .. .|.-+++.+.|+..+++.+++|+.|+.+..||++. ++.+
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            34577888876 78888888998865554444333  33 38888999999887889999999999999999993 3222


Q ss_pred             --EeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          345 --DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       345 --~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                        ...-|...|.+|.-+| .+.++++|+.|-.|++||.++...++....       ..+.|..+.++|.-...+++++.-
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-------v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-------VGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-------cccceEEEEecchhhhHHHHHHHh
Confidence              2445778888888776 688999999999999999997665543222       237899999999754455556655


Q ss_pred             CcEEEEeCCcceeee----e-ecCCCCCeEEEEEcCCCCEEEEEe-CCccEE-EEECCC
Q 006909          422 SKLRILDGVDVIHKF----K-GLPKSGSQMSASFTTTGKHIISIG-DDCRVY-VWNYDE  473 (626)
Q Consensus       422 g~i~iwd~~~~~~~~----~-~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~-iwd~~~  473 (626)
                      +-.+|.+..+....+    . ...|.+-.....|.....+|+|++ .|+.|+ +|-..+
T Consensus       276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            666676654322211    1 122444455555544445677765 466654 665443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.06  E-value=4.9e-07  Score=90.04  Aligned_cols=243  Identities=12%  Similarity=0.090  Sum_probs=143.2

Q ss_pred             EcCCCCEEEEEeC----------CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          189 FSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       189 fspdg~~Latgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      +||||+.|+.+..          +..|.+||..+.+.......+.                                   
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~-----------------------------------   97 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE-----------------------------------   97 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC-----------------------------------
Confidence            9999997777655          7889999999854422111110                                   


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEe-C-CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCS-M-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~-d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      .|.  +. .......++++|+| +|+... . +..|.+.|+.+++.+..+.-.....-...++ +..+  .-+.||....
T Consensus        98 ~p~--~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e-~~~~--~~~~Dg~~~~  171 (352)
T TIGR02658        98 GPR--FL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN-DTFF--MHCRDGSLAK  171 (352)
T ss_pred             Cch--hh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC-CccE--EEeecCceEE
Confidence            000  00 12233467889998 555444 3 7899999999999999887555333333332 2222  2334555444


Q ss_pred             EeCCC-CeEE-E---eccC-CCCe-EEEEEee-CCCEEEEEecCCcEEEEEcCCCceeee-EEeecccc----ccCCCCe
Q 006909          336 WGVCE-KRVV-D---WADV-RDVI-SAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRK----KTSGNKI  402 (626)
Q Consensus       336 wd~~~-~~~~-~---~~~~-~~~i-~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~----~~~~~~i  402 (626)
                      ..+.. ++.. .   .... ..++ ..-.|.+ +|+++.+... |+|.+.|+.+...... .+......    .-....+
T Consensus       172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~  250 (352)
T TIGR02658       172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW  250 (352)
T ss_pred             EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence            33321 2111 0   1111 0000 0003456 8888888777 9999999765543322 22211100    1123445


Q ss_pred             EEEEEcCCCCcEEEEEe---------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-EEEEEe-CCccEEEEEC
Q 006909          403 TGIQFSRDESQRIMITS---------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNY  471 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s-~dg~I~iwd~  471 (626)
                      .-++++|++.+.++...         ..+.|.++|..+........ -...+..++++||++ +|++.. .++.|.+.|.
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            55999999854444332         22589999987655544433 345889999999999 887666 5788999999


Q ss_pred             CCC
Q 006909          472 DEL  474 (626)
Q Consensus       472 ~~~  474 (626)
                      .++
T Consensus       330 ~t~  332 (352)
T TIGR02658       330 ETG  332 (352)
T ss_pred             cCC
Confidence            886

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.06  E-value=1.4e-09  Score=116.11  Aligned_cols=147  Identities=24%  Similarity=0.428  Sum_probs=125.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeecc
Q 006909          187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG  266 (626)
Q Consensus       187 l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (626)
                      +-++++.-++++|+.-+.|.+|+....                                            +.+. .+.|
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~d--------------------------------------------n~p~-~l~G  173 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHED--------------------------------------------NKPI-RLKG  173 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEecccc--------------------------------------------CCcc-eecc
Confidence            345667779999999999999998631                                            2222 6789


Q ss_pred             CccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE--eecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909          267 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  343 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~  343 (626)
                      |.+.|..+.|+.+| +++++|.|.++++|++++.+...  -|+|+..|..+.|.| +  .+++++.|.+.++|+....++
T Consensus       174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l  250 (967)
T KOG0974|consen  174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQL  250 (967)
T ss_pred             cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEeccccee
Confidence            99999999999888 99999999999999999887765  568999999999998 4  999999999999998877776


Q ss_pred             EEeccCC-CCeEEEEEeeCCCEEEEEecCCcEEEEEcCC
Q 006909          344 VDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASG  381 (626)
Q Consensus       344 ~~~~~~~-~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~  381 (626)
                      ..+..|. ..|..++..++...+++++.||.+++|++.+
T Consensus       251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            6666664 5689999999999999999999999999864

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=2.1e-08  Score=103.81  Aligned_cols=261  Identities=14%  Similarity=0.188  Sum_probs=172.3

Q ss_pred             ccccccccccccCcEEEEEEcCCC------------CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeee
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDG------------RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF  237 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg------------~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (626)
                      ..+..+.+.-|+..|+.+.|.|-.            -.||++...|.|.+||+..+                        
T Consensus        44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~------------------------   99 (1062)
T KOG1912|consen   44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA------------------------   99 (1062)
T ss_pred             hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh------------------------
Confidence            456778888999999999998731            26788888899999999862                        


Q ss_pred             cCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCC-----CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCe
Q 006909          238 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-----NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYV  311 (626)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-----~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v  311 (626)
                                           ..+..+..|..++.+++|-+.     ..|++-....+|.+|+..+|+....+. .....
T Consensus       100 ---------------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL  158 (1062)
T KOG1912|consen  100 ---------------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL  158 (1062)
T ss_pred             ---------------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence                                 334556678889999999752     267777777899999999999988876 45567


Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEeCCC-------CeEEE-eccCCC------------C-------------eEEEEE
Q 006909          312 TCVQFNPIDDNYFISGSIDGKVRIWGVCE-------KRVVD-WADVRD------------V-------------ISAICY  358 (626)
Q Consensus       312 ~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-------~~~~~-~~~~~~------------~-------------i~~i~~  358 (626)
                      .|+.+.|.+.+.+..-+..|.|.+-+.-.       ++... ...|.+            .             .-.++|
T Consensus       159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf  238 (1062)
T KOG1912|consen  159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF  238 (1062)
T ss_pred             eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence            78999999999888888888888776532       22222 122211            0             113467


Q ss_pred             eeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEeCCcceeeee
Q 006909          359 IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES-QRIMITSEDSKLRILDGVDVIHKFK  437 (626)
Q Consensus       359 sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~  437 (626)
                      +|.-+.++.......+.++|++-..... .+.+..      +.+.-+.+-|++. ..|++...||.+.+|-.+..-..++
T Consensus       239 ~p~~rn~lfi~~prellv~dle~~~~l~-vvpier------~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~  311 (1062)
T KOG1912|consen  239 SPHWRNILFITFPRELLVFDLEYECCLA-VVPIER------GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFK  311 (1062)
T ss_pred             ChhhhceEEEEeccceEEEcchhhceeE-EEEecc------CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccc
Confidence            8877777777778899999998665433 333332      4455566766642 4688899999999997443222221


Q ss_pred             ec-----------------CCCCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCCCCCCCCcc
Q 006909          438 GL-----------------PKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQK  482 (626)
Q Consensus       438 ~~-----------------~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~  482 (626)
                      ..                 ...-.+....-.|. ...++.--.+|.+.+|.+.++........
T Consensus       312 ~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s  374 (1062)
T KOG1912|consen  312 KPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRS  374 (1062)
T ss_pred             ccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccc
Confidence            10                 01111112222343 33344444578899999998754444433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=4.9e-08  Score=97.57  Aligned_cols=232  Identities=14%  Similarity=0.209  Sum_probs=144.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909          184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  263 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (626)
                      =+.+.|||-|.||+|--.-| |.+|-=.+                                             ...++.
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~---------------------------------------------f~r~~R  246 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGES---------------------------------------------FDRIQR  246 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCcc---------------------------------------------HHHHHh
Confidence            45789999999999998877 88994332                                             111222


Q ss_pred             eccCccceEEEEEcCCC-eEEEEeC-----------CCcEEEeccCCCeeeEeecC---CCCeE-EEEEeeCCCCEEEEE
Q 006909          264 LHGHKGDVLDLAWSNSN-YLLSCSM-----------DKTVRMWQVGCNQCLNVFDH---HNYVT-CVQFNPIDDNYFISG  327 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~-~l~s~s~-----------d~~v~iwd~~~~~~~~~~~~---~~~v~-~~~~~p~~~~~l~s~  327 (626)
                      + .|. .|.-+.|||.. +|+|-+.           ...++|||+.+|...+.|..   ...+. -..|+. +++++|-.
T Consensus       247 F-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm  323 (698)
T KOG2314|consen  247 F-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARM  323 (698)
T ss_pred             c-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEe
Confidence            2 243 57888999976 8887542           25799999999999888853   22222 458888 99999887


Q ss_pred             eCCCcEEEEeCCCCeEEEeccC-CCCeEEEEEeeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          328 SIDGKVRIWGVCEKRVVDWADV-RDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~~~~~-~~~i~~i~~sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      .. ..|.||+..+-.++..... -..|....|+|.++.||--+..     ..+.+..+.+.+...... +.      .-.
T Consensus       324 ~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n-lf------nVs  395 (698)
T KOG2314|consen  324 TG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN-LF------NVS  395 (698)
T ss_pred             cc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc-ce------eee
Confidence            76 5699998876444433222 3568889999998877754322     234444444333221110 00      111


Q ss_pred             eEEEEEcCCCCcEEEEEe----------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC---CccEEE
Q 006909          402 ITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYV  468 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~---dg~I~i  468 (626)
                      =..+.|..+| .+|+.--          .-..+.|+.++..........-...|...+|-|.|..+++-+.   ..++.+
T Consensus       396 DckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsf  474 (698)
T KOG2314|consen  396 DCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSF  474 (698)
T ss_pred             ccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeE
Confidence            2345566766 4544321          1123455555433222223334678899999999988776543   368999


Q ss_pred             EECCC
Q 006909          469 WNYDE  473 (626)
Q Consensus       469 wd~~~  473 (626)
                      |.+++
T Consensus       475 Y~~e~  479 (698)
T KOG2314|consen  475 YAVET  479 (698)
T ss_pred             EEeec
Confidence            99884

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.04  E-value=2.4e-07  Score=106.82  Aligned_cols=206  Identities=13%  Similarity=0.142  Sum_probs=135.2

Q ss_pred             cceEEEEEcCCC-eEEEE-eCCCcEEEeccCCCeeeEeec-----------------CCCCeEEEEEeeCCCCEEEEEeC
Q 006909          269 GDVLDLAWSNSN-YLLSC-SMDKTVRMWQVGCNQCLNVFD-----------------HHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       269 ~~V~~l~~s~~~-~l~s~-s~d~~v~iwd~~~~~~~~~~~-----------------~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                      .....+++.+++ .|+.+ ...+.|+++|..++.......                 .-.....++++|.++.++++.+.
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            345788898765 55544 445789999987765432211                 01234689999855666677777


Q ss_pred             CCcEEEEeCCCCeEEEeccC---------------CCCeEEEEEeeCCCEEEE-EecCCcEEEEEcCCCceeeeEE----
Q 006909          330 DGKVRIWGVCEKRVVDWADV---------------RDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKV----  389 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~~~~~---------------~~~i~~i~~sp~g~~l~~-g~~dg~i~i~d~~~~~~~~~~~----  389 (626)
                      ++.|++||..++.+..+.+.               -.....|+++|+|+.|++ -+.++.|++||+.++......-    
T Consensus       704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            89999999987765433211               123567999999985554 4556899999988654321100    


Q ss_pred             ------eeccc----cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce-eeeeecC------------CCCCeE
Q 006909          390 ------DFHDR----KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLP------------KSGSQM  446 (626)
Q Consensus       390 ------~~~~~----~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~------------~~~~v~  446 (626)
                            .+...    .........+++++++| .++++-+.++.|++||..+.. ..+.+.+            .-....
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~  862 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA  862 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence                  00000    00011235689999998 688888889999999976432 2222211            112567


Q ss_pred             EEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          447 SASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       447 ~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      .++++++|+.+++-+.++.|++||+.++.
T Consensus       863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        863 GLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            89999999998888899999999998763

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.02  E-value=2.9e-08  Score=93.67  Aligned_cols=199  Identities=13%  Similarity=0.269  Sum_probs=146.0

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      -..+++++.+.++...|+.|-..|++.-+.+...-.                                         ...
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------------------------km~  105 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------------------------KMT  105 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------------------------hcc
Confidence            467899999999999999999999998887654100                                         023


Q ss_pred             CceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          260 PLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                      ..+....|...|..+.|+-. ..+++++.|+.+.---.+.+..+..+......+++.+.- .  +.+.|...|.|.+-.+
T Consensus       106 ~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~-~--~~fvGd~~gqvt~lr~  182 (404)
T KOG1409|consen  106 FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA-L--YAFVGDHSGQITMLKL  182 (404)
T ss_pred             hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee-E--EEEecccccceEEEEE
Confidence            35666789999999999854 489999999877655555555554444344444444433 2  5566666666655443


Q ss_pred             ---CCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          339 ---CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       339 ---~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                         .-+.+..+.+|.+.+.+++|.|....+.+|..|..+.+||+............+      ...|..+...+-- +.+
T Consensus       183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh------~~kV~~l~~~~~t-~~l  255 (404)
T KOG1409|consen  183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH------NDKVQALSYAQHT-RQL  255 (404)
T ss_pred             eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc------hhhhhhhhhhhhh-eee
Confidence               334566788999999999999999999999999999999998776654433333      3677777776664 689


Q ss_pred             EEEeCCCcEEEEeC
Q 006909          416 MITSEDSKLRILDG  429 (626)
Q Consensus       416 ~~~s~dg~i~iwd~  429 (626)
                      ++++.||.|.+|+.
T Consensus       256 ~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  256 ISCGEDGGIVVWNM  269 (404)
T ss_pred             eeccCCCeEEEEec
Confidence            99999999999974

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.00  E-value=7.5e-08  Score=87.87  Aligned_cols=188  Identities=13%  Similarity=0.084  Sum_probs=130.4

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe--EE--EeccCCCCeE
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--VV--DWADVRDVIS  354 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~--~~--~~~~~~~~i~  354 (626)
                      .+..++.|.++++.+++.+..-... |.  -.+.++++++ ++.++++.+....|..|.+....  ..  ......+.-.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF  207 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF  207 (344)
T ss_pred             ceeeccCCcceeEEEEecCccccee-eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence            5778889999999988754332222 22  2488999999 99999999999999999886532  22  2344556667


Q ss_pred             EEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc-EEEEEeCCCcEEEEeCCcce
Q 006909          355 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ-RIMITSEDSKLRILDGVDVI  433 (626)
Q Consensus       355 ~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~l~~~s~dg~i~iwd~~~~~  433 (626)
                      +.+|+.....+|+++.||++.|||++....+.....  ..++.|.+.+..+.|++.|.. +|+..-.-+.+.+.|+++..
T Consensus       208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s--strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS--STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             eeeeccCcceEEEEecCCcEEEEEecccccchhhhc--ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            889999999999999999999999998776554322  224457899999999986643 44555556889999988644


Q ss_pred             eeeee--c------CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          434 HKFKG--L------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       434 ~~~~~--~------~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      .....  .      +....+....|+.++.-+.+.+++ .+.=|++..
T Consensus       286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             eeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence            32222  1      112336677777777666665543 355566554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.98  E-value=5.4e-09  Score=117.07  Aligned_cols=187  Identities=18%  Similarity=0.276  Sum_probs=148.9

Q ss_pred             cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe
Q 006909          266 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  342 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~  342 (626)
                      .|-..|.++.-+|.. +.+||+.||.|++|....++.+..++  ....|+.+.|+. .|+.+..+..||.+.+|......
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCcc
Confidence            345667777777765 89999999999999999998888775  447899999999 99999999999999999998777


Q ss_pred             EEEeccCCCCeEEEEEeeCCCEEEEEe---cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909          343 VVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  419 (626)
Q Consensus       343 ~~~~~~~~~~i~~i~~sp~g~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s  419 (626)
                      ......|....+.+.|-.  ..+++++   .++.+.+||..-........      ..|...++++++.|.. +.|++|+
T Consensus      2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~------~~H~~gaT~l~~~P~~-qllisgg 2355 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH------TCHDGGATVLAYAPKH-QLLISGG 2355 (2439)
T ss_pred             eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee------eecCCCceEEEEcCcc-eEEEecC
Confidence            778888988888888876  4566643   46899999975433221111      3456899999999995 8999999


Q ss_pred             CCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          420 EDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       420 ~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+|.|++||++.  .++.+..           ++ ...++++|+..|.|+||++...
T Consensus      2356 r~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             CcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc
Confidence            999999999874  3333322           33 5778999999999999999875

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.98  E-value=1e-07  Score=96.38  Aligned_cols=183  Identities=16%  Similarity=0.202  Sum_probs=143.6

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeec----CCCCeEEEEEe------e-------------CCCCEEEEEeCCCcEEEEe
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFN------P-------------IDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~------p-------------~~~~~l~s~s~dg~v~iwd  337 (626)
                      +++....||.+++|+...++....|.    ..+..++..|.      |             .+...++-|...|.|.+|+
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys   86 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS   86 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence            89999999999999999999888774    34455555553      1             1445688888899999999


Q ss_pred             CCCCeEEEe---ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          338 VCEKRVVDW---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       338 ~~~~~~~~~---~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      +..+++...   ..|.+.|.++.++.+-..|.+++.|+.+..|+......... +...      ...+.+++.+||| ..
T Consensus        87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~-~~~~------~~~~~sl~is~D~-~~  158 (541)
T KOG4547|consen   87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI-WKEQ------KPLVSSLCISPDG-KI  158 (541)
T ss_pred             ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee-eccC------CCccceEEEcCCC-CE
Confidence            999987653   46889999999999999999999999999999987665332 2222      2578899999997 67


Q ss_pred             EEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC-----CCEEEEE-eCCccEEEEECCC
Q 006909          415 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GKHIISI-GDDCRVYVWNYDE  473 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-----g~~l~s~-s~dg~I~iwd~~~  473 (626)
                      +++++  ++|++||+.+........+|.++|.+++|..+     |.+++++ ..+.-|.+|-+..
T Consensus       159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            77776  58999998876665555669999999999876     6776654 3456788888775

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.98  E-value=5.2e-07  Score=83.92  Aligned_cols=189  Identities=15%  Similarity=0.191  Sum_probs=114.6

Q ss_pred             cceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--------CCCCeEEEEEeeCC-----CCEEEEEeCCCcEE
Q 006909          269 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPID-----DNYFISGSIDGKVR  334 (626)
Q Consensus       269 ~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~p~~-----~~~l~s~s~dg~v~  334 (626)
                      ..=..++|+||+ .|+.+...|+|+++|+....+. .+.        ....|..+.|.+..     ...|++-..+|.++
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            345678999998 8888889999999999854332 221        33567777776522     23566677788887


Q ss_pred             EEeCCCC---e---E--EEe-ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          335 IWGVCEK---R---V--VDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       335 iwd~~~~---~---~--~~~-~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      -|-+..+   .   .  ..+ ......|.++.|+|..+.|++|+....      ..+.           .......+++-
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-----------s~a~~~GLtaW  185 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-----------SKASSCGLTAW  185 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-----------ccccccCceEE
Confidence            7765321   1   1  112 234678999999999999988875432      0000           00111334444


Q ss_pred             EEcCCCCcEEEEEeCCCcE-------EEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          406 QFSRDESQRIMITSEDSKL-------RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i-------~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      ..-.+.+.+..+.+.+..+       .+|.+.+...-.........|..|+.||||..||+...+|.|.+|++.+..
T Consensus       186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             EEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            4333333333332222211       223222111111112246789999999999999999999999999999863

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=1.6e-09  Score=107.57  Aligned_cols=246  Identities=13%  Similarity=0.175  Sum_probs=164.1

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      +.+.||+..|..++--.+.+-+++++.|.+|++|.+.......                                     
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~-------------------------------------  771 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI-------------------------------------  771 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc-------------------------------------
Confidence            4567999999999877788899999999999999987511000                                     


Q ss_pred             cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeC-CCCEEEEE-e
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPI-DDNYFISG-S  328 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~-~~~~l~s~-s  328 (626)
                       -...+..++..|+.+|.++.|-.+. ++++  .|+.|++||.--++.+....   ..+.+..+..-|. +..+++.| +
T Consensus       772 -~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs  848 (1034)
T KOG4190|consen  772 -GTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS  848 (1034)
T ss_pred             -ccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc
Confidence             0023456778899999999998776 5544  47889999988777766442   2223333333331 34444444 7


Q ss_pred             CCCcEEEEeCCCCeEEE------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          329 IDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      ...+|+++|.+..+-..      ..+....+.+++..+.|++++++-.+|.|.+.|.+++.....-..+       ....
T Consensus       849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-------ecdl  921 (1034)
T KOG4190|consen  849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM-------ECDL  921 (1034)
T ss_pred             chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc-------cchh
Confidence            78899999999865332      2344566899999999999999999999999999988754321111       1222


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEE-EeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRI-LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      ..++- |.+ +.++....|.++.+ |...+.+..+...+...+..-+  -.-|.-|+++...+.+.+|.-
T Consensus       922 lqlaa-psd-q~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  922 LQLAA-PSD-QALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYAD  987 (1034)
T ss_pred             hhhcC-chh-HHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEec
Confidence            22322 332 57888888888988 8866666655543222222111  123667777776677777753

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.97  E-value=2.7e-07  Score=88.40  Aligned_cols=277  Identities=12%  Similarity=0.109  Sum_probs=162.2

Q ss_pred             CCcEEEeccCCC----eeeEeecCCCCeEEEEEeeCCCCEEEEEeCC---CcEEEEeCCC--CeEEEe---ccCCCCeEE
Q 006909          288 DKTVRMWQVGCN----QCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE--KRVVDW---ADVRDVISA  355 (626)
Q Consensus       288 d~~v~iwd~~~~----~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~v~iwd~~~--~~~~~~---~~~~~~i~~  355 (626)
                      +.-|.+|++.+.    ..+........++-++|+| +.++|.++-.+   |.|.-|.+..  |++...   .....+.+.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence            467999998732    2334445778899999999 88888887654   6677666553  665432   222334488


Q ss_pred             EEEeeCCCEEEEEec-CCcEEEEEcCCCceeeeE--EeeccccccC----CCCeEEEEEcCCCCcEEEEEeC-CCcEEEE
Q 006909          356 ICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEK--VDFHDRKKTS----GNKITGIQFSRDESQRIMITSE-DSKLRIL  427 (626)
Q Consensus       356 i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~~~--~~~~~~~~~~----~~~i~~l~~s~~~~~~l~~~s~-dg~i~iw  427 (626)
                      ++++++|++++++.. .|.|.++-++........  ...+.....|    ...+-...+.|++ ++|++..- -..|.+|
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y  172 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEE
Confidence            999999999888764 589999999764333222  2222111111    1226778899998 56665543 4689999


Q ss_pred             eCCcceeeeee---cCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecC
Q 006909          428 DGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  503 (626)
Q Consensus       428 d~~~~~~~~~~---~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s  503 (626)
                      +..+.......   .........+.|+|++++....++ +++|-+|.++........-......-..|..+...-++.-+
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis  252 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS  252 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence            97643222111   134566788999999999988775 89999999987411000000000000112222233344445


Q ss_pred             CCCcccccccCCCccccCccccc------cCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909          504 GIGTEQKSLCSSSLRDCSQKWDN------LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  568 (626)
Q Consensus       504 ~~~~~l~~~~~~~~~~~~~~w~~------~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~  568 (626)
                      ++|..|+.+...--  ++....+      +.........+.+-....|+++|++|+.+......|.++...
T Consensus       253 ~dGrFLYasNRg~d--sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         253 PDGRFLYASNRGHD--SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCCCEEEEecCCCC--eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            55555544332110  0000011      111222334445567778999999998888755677777443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.96  E-value=2.8e-07  Score=85.32  Aligned_cols=201  Identities=10%  Similarity=0.066  Sum_probs=140.4

Q ss_pred             CccceEEEEEcC---CC--eEEEEeCCCcEEEeccCCCeeeEeec------CC-CCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          267 HKGDVLDLAWSN---SN--YLLSCSMDKTVRMWQVGCNQCLNVFD------HH-NYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       267 h~~~V~~l~~s~---~~--~l~s~s~d~~v~iwd~~~~~~~~~~~------~~-~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                      -++.+..+.|.-   ++  .++-+-..|.|.++..........+.      .. ....++.|++ .+..++++..+|.+.
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~-~~~~i~vs~s~G~~~  146 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST-SGTKIFVSDSRGSIS  146 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec-cCceEEEEcCCCcEE
Confidence            345677777762   23  56677778889998765444433332      11 1255788888 788888888899988


Q ss_pred             EEeCCCCeE---EEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          335 IWGVCEKRV---VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       335 iwd~~~~~~---~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      +-+.....+   ..+..|...+....|+. +.+.+.+|+.|+.+..||++....-    .++ ..+.|...|.+|.-+|.
T Consensus       147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~----i~~-n~kvH~~GV~SI~ss~~  221 (339)
T KOG0280|consen  147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF----IWH-NSKVHTSGVVSIYSSPP  221 (339)
T ss_pred             EEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce----eee-cceeeecceEEEecCCC
Confidence            665544433   34778888888888876 4468899999999999999833311    111 13344588999999987


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC--EEEEEeCCccEEEEECCCC
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+.++++|+.|-.|++||+++..+.+......+.|..+.++|.-.  .|+++ .-+-.+|-+.+..
T Consensus       222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~  286 (339)
T KOG0280|consen  222 KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDK  286 (339)
T ss_pred             CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHH-HhcCceEEEeccc
Confidence            778999999999999999997766666555678999999998543  33333 3333566666554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=2.9e-08  Score=101.82  Aligned_cols=250  Identities=16%  Similarity=0.236  Sum_probs=169.4

Q ss_pred             cccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909          167 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  246 (626)
Q Consensus       167 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (626)
                      ..+.+.+-|+|.||.+.|.-+.|+.+.+.|-|...+|.|.||-+-.+....                             
T Consensus        57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E-----------------------------  107 (1189)
T KOG2041|consen   57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE-----------------------------  107 (1189)
T ss_pred             cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH-----------------------------
Confidence            345677889999999999999999999999999999999999887642210                             


Q ss_pred             eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE
Q 006909          247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  325 (626)
                                    ...-....+.|.+++|+.+| .++..-.||.|.+=.++.++....--.......+.|++ +...++
T Consensus       108 --------------EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~L  172 (1189)
T KOG2041|consen  108 --------------EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQAL  172 (1189)
T ss_pred             --------------HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHH
Confidence                          01111245678899999887 78888888888777666544322211222345789999 888888


Q ss_pred             EEeCCCcEEEEeCCCCe--------EEE----eccCCCCeEEEEEe--------eCCCEEEEEecCCcEEEEEcCCCcee
Q 006909          326 SGSIDGKVRIWGVCEKR--------VVD----WADVRDVISAICYI--------PDGKGFIVGSITGTCHFYKASGNDLK  385 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~--------~~~----~~~~~~~i~~i~~s--------p~g~~l~~g~~dg~i~i~d~~~~~~~  385 (626)
                      .+-.+|.+.+||....-        .+.    +......|..+.|.        |+...|+++..+|.+.+..-.+...+
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            88889999999986521        111    11222335556653        47789999999999988766554433


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC---------CcEEEEeC-CcceeeeeecCCCCCeEEEEEcCCCC
Q 006909          386 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---------SKLRILDG-VDVIHKFKGLPKSGSQMSASFTTTGK  455 (626)
Q Consensus       386 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d---------g~i~iwd~-~~~~~~~~~~~~~~~v~~~~~sp~g~  455 (626)
                      .. +. .      +..+.+..|+++| ..|++++.+         +.|.+|.. ......++.  ....|++++|-..|-
T Consensus       253 vv-~d-t------gm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv--pg~~It~lsWEg~gL  321 (1189)
T KOG2041|consen  253 VV-VD-T------GMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV--PGSCITGLSWEGTGL  321 (1189)
T ss_pred             eE-Ee-c------ccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhheEEEec--CCceeeeeEEcCCce
Confidence            22 11 1      2678999999998 688887654         35666663 244444444  456788888876665


Q ss_pred             EEEEEeCCccEEEEECC
Q 006909          456 HIISIGDDCRVYVWNYD  472 (626)
Q Consensus       456 ~l~s~s~dg~I~iwd~~  472 (626)
                      .++.+- |+.|++=++.
T Consensus       322 riA~Av-dsfiyfanIR  337 (1189)
T KOG2041|consen  322 RIAIAV-DSFIYFANIR  337 (1189)
T ss_pred             EEEEEe-cceEEEEeec
Confidence            555542 4555554443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.93  E-value=2.2e-08  Score=93.01  Aligned_cols=250  Identities=19%  Similarity=0.342  Sum_probs=161.4

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      ..+.|+++.|...|.|||||...|.|.+|.-.... .|.                                       .+
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~ce---------------------------------------yk   64 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCE---------------------------------------YK   64 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeeccccc-ccc---------------------------------------hh
Confidence            44679999999999999999999999999765422 110                                       11


Q ss_pred             CceeeccC------------ccceEEEEEcCC-C--eEEEEeCCCcEEEeccCCCe-------------------e----
Q 006909          260 PLQELHGH------------KGDVLDLAWSNS-N--YLLSCSMDKTVRMWQVGCNQ-------------------C----  301 (626)
Q Consensus       260 ~~~~~~~h------------~~~V~~l~~s~~-~--~l~s~s~d~~v~iwd~~~~~-------------------~----  301 (626)
                      ....+++|            ...|..+.|..+ +  .++..+.|++|++|.+....                   +    
T Consensus        65 f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~  144 (460)
T COG5170          65 FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST  144 (460)
T ss_pred             hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCH
Confidence            12222222            356888888754 3  67888899999999864220                   0    


Q ss_pred             --------------e-----Eee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC--C--eEEEeccCC-----C
Q 006909          302 --------------L-----NVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--K--RVVDWADVR-----D  351 (626)
Q Consensus       302 --------------~-----~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~--~--~~~~~~~~~-----~  351 (626)
                                    +     +.+  .|.-.++++.|+. +...++++. |=.|.+|++.-  +  .++...+|.     .
T Consensus       145 ~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLte  222 (460)
T COG5170         145 KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTE  222 (460)
T ss_pred             HHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHH
Confidence                          0     001  2556678889987 777777654 67899998753  1  233344433     4


Q ss_pred             CeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceee-----eEEeecc----ccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          352 VISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKL-----EKVDFHD----RKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       352 ~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~-----~~~~~~~----~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                      .|++..|+|. ...+.-.+..|.|++-|++...+-.     ......+    -.......|..+.|+++| +++++ -.-
T Consensus       223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIls-Rdy  300 (460)
T COG5170         223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILS-RDY  300 (460)
T ss_pred             HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEE-ecc
Confidence            5888999994 5667778889999999998433211     1010000    011123578899999997 45554 445


Q ss_pred             CcEEEEeCC---cceeeeeecC----------CCCCe---EEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          422 SKLRILDGV---DVIHKFKGLP----------KSGSQ---MSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       422 g~i~iwd~~---~~~~~~~~~~----------~~~~v---~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      .+|+|||.+   .++.+...+.          ....|   ..+.||-|.+.+++|+..+..-||-..+
T Consensus       301 ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         301 LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence            799999976   3444332211          11222   3578899999999999988888877544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.92  E-value=5.4e-09  Score=117.07  Aligned_cols=193  Identities=18%  Similarity=0.274  Sum_probs=136.0

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC--ccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVF  254 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  254 (626)
                      ++.|-..|.+|.-+|.-.+.+||+.||.|++|....+...+..-+...     .....+++...+.+...+....  ..|
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-----s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-----SRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-----chhhhhhhcccCCceeeeccCCceeec
Confidence            445667889999999999999999999999999877655433222211     1111222222222222222222  345


Q ss_pred             cccCCCceeeccCccceEEEEEcCCCeEEEE---eCCCcEEEeccCCC--eeeEeecCCCCeEEEEEeeCCCCEEEEEeC
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSNYLLSC---SMDKTVRMWQVGCN--QCLNVFDHHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~---s~d~~v~iwd~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                      +....+....+.|.....+..|-. ..++++   +.++.+.+||..-.  ..+-...|.+.++++++.| ....|++|+.
T Consensus      2279 q~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr 2356 (2439)
T KOG1064|consen 2279 QASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGR 2356 (2439)
T ss_pred             ccCCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCC
Confidence            666778888889999999999977 445554   45788999997432  2222245999999999999 9999999999


Q ss_pred             CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909          330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  385 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~  385 (626)
                      +|.|++||++..+++.....        ++ ...++++|+..|.++||++......
T Consensus      2357 ~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             cCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchh
Confidence            99999999998776653332        33 5668999999999999999877543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.89  E-value=4.1e-07  Score=104.86  Aligned_cols=201  Identities=16%  Similarity=0.129  Sum_probs=130.6

Q ss_pred             EEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEeecC---------------CCCeEEEEEeeCCCCEEEEEe-CCCcE
Q 006909          272 LDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDH---------------HNYVTCVQFNPIDDNYFISGS-IDGKV  333 (626)
Q Consensus       272 ~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~~~---------------~~~v~~~~~~p~~~~~l~s~s-~dg~v  333 (626)
                      ..+++++. + .+++-+.++.|++||... ..+..+..               -.....+++++ +++.|+++. .++.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            46778764 5 566667788899999864 44443321               12357889998 777665554 45679


Q ss_pred             EEEeCCCCeEEEeccC-----------------CCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEe-----
Q 006909          334 RIWGVCEKRVVDWADV-----------------RDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVD-----  390 (626)
Q Consensus       334 ~iwd~~~~~~~~~~~~-----------------~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----  390 (626)
                      +++|+.++.+..+.+.                 -.....++++| ++..+++.+.++.|++||..++......-.     
T Consensus       649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~  728 (1057)
T PLN02919        649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN  728 (1057)
T ss_pred             EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence            9999988776543221                 12346799999 566666677788999999876643211000     


Q ss_pred             eccc--cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee-eee-c-------------------CCCCCeEE
Q 006909          391 FHDR--KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKG-L-------------------PKSGSQMS  447 (626)
Q Consensus       391 ~~~~--~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~-~-------------------~~~~~v~~  447 (626)
                      ..+.  ..........++++|++..++++.+.++.|++||..+.... ..+ .                   ..-....+
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence            0000  00112356789999998556677777899999997643211 110 0                   00113468


Q ss_pred             EEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          448 ASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       448 ~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++++++|+.+++-+.++.|++||..++
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg  835 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATK  835 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCC
Confidence            899999998888889999999998864

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.88  E-value=5.3e-06  Score=80.38  Aligned_cols=221  Identities=16%  Similarity=0.184  Sum_probs=144.9

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceee
Q 006909          186 TLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  264 (626)
Q Consensus       186 ~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (626)
                      ++.|.+ +|.++++--..+.|..|+..++..                                              ..+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------------------------~~~   37 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------------------------EVI   37 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------------------------EEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------------------------EEE
Confidence            567887 676777776788899999876321                                              111


Q ss_pred             ccCccceEEEEEc-CCCeEEEEeCCCcEEEeccCCCeeeEeec------CCCCeEEEEEeeCCCCEEEEEeCC-------
Q 006909          265 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSID-------  330 (626)
Q Consensus       265 ~~h~~~V~~l~~s-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~~~~v~~~~~~p~~~~~l~s~s~d-------  330 (626)
                      .. .. ...+++. +++.|+.+...+ +.++|..+++......      .....+.+++.| +|++.++....       
T Consensus        38 ~~-~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~  113 (246)
T PF08450_consen   38 DL-PG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGID  113 (246)
T ss_dssp             ES-SS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGG
T ss_pred             ec-CC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccccc
Confidence            11 11 6677777 778777777755 5555998886654443      234688999999 99977776543       


Q ss_pred             -CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEE-EEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEE
Q 006909          331 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       331 -g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~  407 (626)
                       |.|..++.. ++.......-...+.|+|+|+++.|+ +-+..+.|..|++........ ...+.. .....+..-.+++
T Consensus       114 ~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~pDG~~v  191 (246)
T PF08450_consen  114 PGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGGPGYPDGLAV  191 (246)
T ss_dssp             SEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEE
T ss_pred             ccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCCCcCCCcceE
Confidence             557778877 56555555566788999999999776 456678899999875443121 111111 1111134788999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecCCCCCeEEEEE-cCCCCEEEEEe
Q 006909          408 SRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASF-TTTGKHIISIG  461 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~-sp~g~~l~s~s  461 (626)
                      ..+| +++++....+.|.+++.. +....+...  ...+++++| .++.+.|+..+
T Consensus       192 D~~G-~l~va~~~~~~I~~~~p~G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  192 DSDG-NLWVADWGGGRIVVFDPDGKLLREIELP--VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             BTTS--EEEEEETTTEEEEEETTSCEEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred             cCCC-CEEEEEcCCCEEEEECCCccEEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence            9998 677777789999999976 333444432  348999999 46766665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.88  E-value=5.7e-07  Score=93.31  Aligned_cols=184  Identities=10%  Similarity=-0.006  Sum_probs=114.3

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeE----
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS----  354 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~----  354 (626)
                      ++.++.++.++.+..+|..+|+.+........+.+.-..  .+..++.++.++.|+.||..+++.+-.........    
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~  182 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG  182 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence            467888889999999999999988877654444332222  34567778889999999999887654332222111    


Q ss_pred             --EEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc-cCCCC---e-EEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909          355 --AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-TSGNK---I-TGIQFSRDESQRIMITSEDSKLRIL  427 (626)
Q Consensus       355 --~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~---i-~~l~~s~~~~~~l~~~s~dg~i~iw  427 (626)
                        +...  .+..++++..+|.+..+|..+++...... ...... .....   + ....+. +  ..+++++.+|.+..|
T Consensus       183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~~~-~--~~vy~~~~~g~l~a~  256 (377)
T TIGR03300       183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPVVD-G--GQVYAVSYQGRVAAL  256 (377)
T ss_pred             CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccEEE-C--CEEEEEEcCCEEEEE
Confidence              1111  13477888889999999998876543311 110000 00000   0 111121 2  378888889999999


Q ss_pred             eCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          428 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       428 d~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |..+........ . .......  ..+..|+.++.||.|+.+|..++
T Consensus       257 d~~tG~~~W~~~-~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG  299 (377)
T TIGR03300       257 DLRSGRVLWKRD-A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSG  299 (377)
T ss_pred             ECCCCcEEEeec-c-CCccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence            987665444432 1 1111122  34678888888999999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.88  E-value=1.1e-06  Score=99.50  Aligned_cols=243  Identities=12%  Similarity=0.205  Sum_probs=155.1

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      ...+.|.++.|-++...|+.+..+|.|.+.......                                          ..
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~------------------------------------------~~  110 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDP------------------------------------------DE  110 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC------------------------------------------CC
Confidence            345789999999999999999999999988332100                                          01


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC---------------CCeee--------Eeec--------
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------------CNQCL--------NVFD--------  306 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~---------------~~~~~--------~~~~--------  306 (626)
                      ..+.....-...|.+++||||+ .|+..+.+++|.+..-.               ..+.+        ..|.        
T Consensus       111 ~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa  190 (928)
T PF04762_consen  111 DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAA  190 (928)
T ss_pred             ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhh
Confidence            1122333346789999999998 77777777887765311               00111        1110        


Q ss_pred             -----------------CCCCeEEEEEeeCCCCEEEEEeC---C---CcEEEEeCCCCeEEEec-cCCCCeEEEEEeeCC
Q 006909          307 -----------------HHNYVTCVQFNPIDDNYFISGSI---D---GKVRIWGVCEKRVVDWA-DVRDVISAICYIPDG  362 (626)
Q Consensus       307 -----------------~~~~v~~~~~~p~~~~~l~s~s~---d---g~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g  362 (626)
                                       ....-..++|-. ||.+||+.+.   .   ..+|||+-. |.+.... ...+--.+++|.|.|
T Consensus       191 ~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG  268 (928)
T PF04762_consen  191 RQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG  268 (928)
T ss_pred             hhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC
Confidence                             112345678888 9999998875   2   479999976 5544322 333445678999999


Q ss_pred             CEEEEEec---CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce----ee
Q 006909          363 KGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----HK  435 (626)
Q Consensus       363 ~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~----~~  435 (626)
                      ++||+...   ...|.+|.-++-+..--.+..    ......|..+.|++++ ..|++...|. |.+|-..+..    +.
T Consensus       269 ~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~----~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqe  342 (928)
T PF04762_consen  269 NLIASSQRLPDRHDVVFFERNGLRHGEFTLRF----DPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQE  342 (928)
T ss_pred             CEEEEEEEcCCCcEEEEEecCCcEeeeEecCC----CCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence            99988765   346677765543322112221    1234689999999997 6777766555 9999877532    22


Q ss_pred             eeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECC
Q 006909          436 FKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       436 ~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~  472 (626)
                      +.. .....+..+.|+|.. ..|...+.+|.+..+++.
T Consensus       343 i~~-~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  343 IRF-SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             EEc-cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence            222 233445569999965 446667766877776654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.86  E-value=1.1e-06  Score=86.48  Aligned_cols=246  Identities=10%  Similarity=0.135  Sum_probs=163.4

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDG-VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      +|.+.|.-..+..+++-++.|..|| .+-|+|..++.                                           
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-------------------------------------------  393 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-------------------------------------------  393 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-------------------------------------------
Confidence            7889999999999999999999999 89999988642                                           


Q ss_pred             CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC----
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG----  331 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg----  331 (626)
                         ++.+.+.-+.|.++..+++| .++.+-....+.+.|++++.....-+ ..+-|+.+.|+| +++.+|-+--+|    
T Consensus       394 ---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq  469 (668)
T COG4946         394 ---VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQ  469 (668)
T ss_pred             ---EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeee
Confidence               44555667889999999998 57777777888889999887644332 556799999999 999999876665    


Q ss_pred             cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-------CCcEEEEEcCCCceeeeEEeeccc----------
Q 006909          332 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-------TGTCHFYKASGNDLKLEKVDFHDR----------  394 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-------dg~i~i~d~~~~~~~~~~~~~~~~----------  394 (626)
                      .|+++|+.+++..........=.+-+|.|++++|..-+.       |..+.=+....-..+.......+.          
T Consensus       470 ~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~  549 (668)
T COG4946         470 SIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDE  549 (668)
T ss_pred             eEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchh
Confidence            589999999999887777777778889999998876543       222222221111111100000000          


Q ss_pred             ccc---------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC---------------cceeeeee-----cCCCCCe
Q 006909          395 KKT---------SGNKITGIQFSRDESQRIMITSEDSKLRILDGV---------------DVIHKFKG-----LPKSGSQ  445 (626)
Q Consensus       395 ~~~---------~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~---------------~~~~~~~~-----~~~~~~v  445 (626)
                      ...         ....+.-+-..+ +...-+++-.+|.|.++...               ..+..+..     ..-...+
T Consensus       550 ~~~ea~e~dle~ie~r~eP~pVee-~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nv  628 (668)
T COG4946         550 ANSEAGEVDLEGIEDRVEPFPVEE-GDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNV  628 (668)
T ss_pred             cCccccceehhhhcccccccccCc-cceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhccc
Confidence            000         000111111111 22445566666666666421               01111111     1123578


Q ss_pred             EEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          446 MSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       446 ~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      .++..|+|+..|+. -.||.+++++++.
T Consensus       629 ss~rlS~D~s~ilv-k~d~kl~~f~vek  655 (668)
T COG4946         629 SSFRLSSDGSKILV-KLDGKLRLFDVEK  655 (668)
T ss_pred             ceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence            89999999999998 7899999999986

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.85  E-value=1.2e-06  Score=91.01  Aligned_cols=191  Identities=12%  Similarity=0.150  Sum_probs=124.0

Q ss_pred             ceEEEEEcCCC-e-EEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCC--CcEEEEeCCCC
Q 006909          270 DVLDLAWSNSN-Y-LLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SID--GKVRIWGVCEK  341 (626)
Q Consensus       270 ~V~~l~~s~~~-~-l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~d--g~v~iwd~~~~  341 (626)
                      .+....|+|+| . ++..+.+   ..|.++|+.+++........+......|+| +++.++.. +.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence            77889999998 3 5544433   568899999887766666666677788999 88766543 333  46888899888


Q ss_pred             eEEEeccCCCCeEEEEEeeCCCEEEEEecC-C--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909          342 RVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  418 (626)
Q Consensus       342 ~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~  418 (626)
                      ....+...........|+|||+.|+..+.. |  .|.++|+.++...  .+...+      ..  ...|+|+|..++++.
T Consensus       268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--rlt~~g------~~--~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--QVVFHG------KN--NSSVSTYKNYIVYSS  337 (419)
T ss_pred             cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--eCccCC------Cc--CceECCCCCEEEEEE
Confidence            877766655545567899999988876643 3  5777777765542  122111      11  248999985444444


Q ss_pred             eCC--------CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEeCC---ccEEEEECCCC
Q 006909          419 SED--------SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL  474 (626)
Q Consensus       419 s~d--------g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d---g~I~iwd~~~~  474 (626)
                      ...        ..|.+.|+.... ..+..   ........|+|||+.|+..+.+   ..+.+.+++..
T Consensus       338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        338 RETNNEFGKNTFNLYLISTNSDYIRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             cCCCcccCCCCcEEEEEECCCCCeEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            332        367778865332 22222   1233358899999988776643   24666676653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.85  E-value=1.9e-08  Score=103.45  Aligned_cols=199  Identities=18%  Similarity=0.309  Sum_probs=140.2

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      -.+++.++..+|.|+-+|.++.-| +.+-|+...                                            ..
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p--------------------------------------------~~   57 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDP--------------------------------------------FT   57 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCC--------------------------------------------CC
Confidence            356788999999999999999877 566677652                                            12


Q ss_pred             Cceeec-cCccceEEEEEcCCC---eEEEEeCCCcEEEeccCC--CeeeE--eecCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          260 PLQELH-GHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGC--NQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       260 ~~~~~~-~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~--~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                      +..-+. --.-.|-.+.|++..   +-+.......-.+|++..  .+.+.  ..+|...|+.+.|+|.....+++++.|.
T Consensus        58 ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt  137 (1081)
T KOG0309|consen   58 PPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT  137 (1081)
T ss_pred             CceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccc
Confidence            222221 112346667777532   333333344566788742  23333  2368899999999998889999999999


Q ss_pred             cEEEEeCCCCe--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          332 KVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       332 ~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      .|..||+++..  +..+..-....+.+.|+.....+.+.+....|.+||++.+..+...+..      |...|..+.|..
T Consensus       138 ~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~------~vs~vn~~~fnr  211 (1081)
T KOG0309|consen  138 YVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG------HVSSVNSIDFNR  211 (1081)
T ss_pred             cceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc------cceeeehHHHhh
Confidence            99999998754  3345555677788999986666777788889999999987766543332      346788888876


Q ss_pred             CCCcEEEEEeCCCcEEEEeC
Q 006909          410 DESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~  429 (626)
                      --...+++.+.|++|+.||.
T Consensus       212 ~~~s~~~s~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  212 FKYSEIMSSSNDGTVKFWDY  231 (1081)
T ss_pred             hhhhhhcccCCCCceeeecc
Confidence            54457888999999999973

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.83  E-value=6.2e-07  Score=82.02  Aligned_cols=191  Identities=13%  Similarity=-0.023  Sum_probs=129.7

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCC-CCeEE
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISA  355 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~i~~  355 (626)
                      +++|+.|+.-|...+|...+.+.....  .+...|+-+.=.-.....+..++.|.++++.++..+......... -.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            458999999999999999876654333  233333221111002234666788899999887654432211111 33889


Q ss_pred             EEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee
Q 006909          356 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK  435 (626)
Q Consensus       356 i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~  435 (626)
                      ++++++++++++.+....|.+|.+.........+...    .....-.+..|+... ..+|++..||++.|||++.....
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a----~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA----PTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec----ccCCCceeeeeccCc-ceEEEEecCCcEEEEEecccccc
Confidence            9999999999999999999999997665443332211    112445677888876 68999999999999998743222


Q ss_pred             -----eeecCCCCCeEEEEEcCCCC--EEEEEeCCccEEEEECCCC
Q 006909          436 -----FKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       436 -----~~~~~~~~~v~~~~~sp~g~--~l~s~s~dg~I~iwd~~~~  474 (626)
                           -....|.+.+..+.|++-|.  +|+..-.-+.+.+-|+.+.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence                 12244889999999998663  4555555688999999886

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=1.2e-06  Score=90.97  Aligned_cols=191  Identities=10%  Similarity=0.034  Sum_probs=118.0

Q ss_pred             CcEEEEEEcCCCCE-EEEEeCC---CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          182 GCIWTLKFSPDGRY-LASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       182 ~~V~~l~fspdg~~-Latgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      +.+....|||||+. ++..+.+   ..|.++|+.++..                                          
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~------------------------------------------  225 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK------------------------------------------  225 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE------------------------------------------
Confidence            37889999999984 6644433   4588888876432                                          


Q ss_pred             CCCceeeccCccceEEEEEcCCC-eE-EEEeCC--CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC-C-
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-G-  331 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-g-  331 (626)
                          ..+....+......|+||| .+ ++.+.+  ..|.++|+.++.......+........|+| +++.|+..+.. + 
T Consensus       226 ----~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~  300 (419)
T PRK04043        226 ----EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGY  300 (419)
T ss_pred             ----EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCC
Confidence                2222234455667899998 44 344434  457777888776554444443344568999 99887776642 3 


Q ss_pred             -cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC---------CcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          332 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       332 -~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                       .|.+.|+.+++..........  ...|+|+|+.++.....         ..|.+.|+.++...  .+...       ..
T Consensus       301 ~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~~-------~~  369 (419)
T PRK04043        301 PNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTAN-------GV  369 (419)
T ss_pred             ceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCCC-------CC
Confidence             588889988877554432222  24899999998877654         26778888776532  11111       12


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCc--EEEEeCC
Q 006909          402 ITGIQFSRDESQRIMITSEDSK--LRILDGV  430 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~--i~iwd~~  430 (626)
                      .....|+|||...+++....+.  +.+.++.
T Consensus       370 ~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        370 NQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             cCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence            2357899998544444433333  4455543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=5.8e-08  Score=96.72  Aligned_cols=210  Identities=19%  Similarity=0.252  Sum_probs=145.1

Q ss_pred             CCCceeeccCccceEEEEEc-CCCeEEEEeCCCcEEEeccCC-------CeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909          258 ESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGC-------NQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s-~~~~l~s~s~d~~v~iwd~~~-------~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                      .-.+..+.||+..|..++-- +.+-+++++.|++|++|.++.       ..|..++. |..+|..+.|.. +.+++++  
T Consensus       725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--  801 (1034)
T KOG4190|consen  725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--  801 (1034)
T ss_pred             eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--
Confidence            33466788999999988654 446899999999999998853       23445553 999999999988 7777765  


Q ss_pred             CCCcEEEEeCCCCeEEE---eccCCCCeEEEEEee--CCCEEEEE-ecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          329 IDGKVRIWGVCEKRVVD---WADVRDVISAICYIP--DGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~---~~~~~~~i~~i~~sp--~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      .||.|.+||.--+++..   .....+.+..+..-|  +...++.| +...+++++|.+......+-....  .......+
T Consensus       802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn--a~~Pna~~  879 (1034)
T KOG4190|consen  802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN--APGPNALT  879 (1034)
T ss_pred             ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc--CCCCchhe
Confidence            47899999987666543   122223333333334  33444444 678899999998877654421111  22334678


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEE-EECCCC
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV-WNYDEL  474 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~i-wd~~~~  474 (626)
                      .+++..+.| ++++++-..|+|.+.|.++....-...+.......++ .|..+.|+....|.++-+ |..-++
T Consensus       880 R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  880 RAIAVADKG-NKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             eEEEeccCc-chhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence            899999998 7999999999999999887654333322333333333 366778888888999988 887766

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=5.7e-07  Score=87.97  Aligned_cols=287  Identities=16%  Similarity=0.133  Sum_probs=189.8

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      -|.+.|+.+.-+ -.+++.+++.||.++.|.-.....                                          -
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG------------------------------------------v   43 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG------------------------------------------V   43 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc------------------------------------------e
Confidence            388888887655 356999999999999997543100                                          1


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeC-CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCC----CEEEEEeCCCc
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD----NYFISGSIDGK  332 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~-d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~s~s~dg~  332 (626)
                      +.+..+..|...|.+++.+-++ .+.|.+. |..++++|+++-..+..+........+.|....|    ...++.-.++.
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~  123 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK  123 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence            2355667899999999999888 6667677 9999999998877665554333333334433123    22333445789


Q ss_pred             EEEEeCCCCe---EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc-eeeeEEeecc-------ccccCCCC
Q 006909          333 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDFHD-------RKKTSGNK  401 (626)
Q Consensus       333 v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~~-------~~~~~~~~  401 (626)
                      +.++|-....   .....-|..+|..+.++|.+..+++....|.|..|.....- .+...+.+.-       ........
T Consensus       124 i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~  203 (558)
T KOG0882|consen  124 IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTE  203 (558)
T ss_pred             cEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccC
Confidence            9999976543   23345678999999999999999999999999999987411 1111111100       01112356


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeee---------------ee----------------cCCCCCeEEE
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKF---------------KG----------------LPKSGSQMSA  448 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~---------------~~----------------~~~~~~v~~~  448 (626)
                      .+++.|+|+| ..+.+-+.|..|++++....  .+.+               ..                ......-+.+
T Consensus       204 pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~  282 (558)
T KOG0882|consen  204 PTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNA  282 (558)
T ss_pred             ccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccccee
Confidence            7899999998 78898899999999974321  1100               00                0012344568


Q ss_pred             EEcCCCCEEEEEeCCccEEEEECCCCCCCC--------------------------CCccCCccceeeeccCCcEEEEec
Q 006909          449 SFTTTGKHIISIGDDCRVYVWNYDELCFPS--------------------------SKQKNSVRSCEHFFSEGVSVAVQW  502 (626)
Q Consensus       449 ~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~--------------------------~~~~~~~~~~~~~~~~g~~~av~~  502 (626)
                      .|...|++|+-|+-=| |+|.++.++....                          ..........+.+.++-.+++++|
T Consensus       283 ~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~  361 (558)
T KOG0882|consen  283 VFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAF  361 (558)
T ss_pred             EEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeee
Confidence            8999999999887554 7777777652110                          001112334445777788889999


Q ss_pred             CCCCcccc
Q 006909          503 PGIGTEQK  510 (626)
Q Consensus       503 s~~~~~l~  510 (626)
                      -.+.-+++
T Consensus       362 kk~rfylf  369 (558)
T KOG0882|consen  362 KKNRFYLF  369 (558)
T ss_pred             ecceEEEE
Confidence            88888777

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.67  E-value=4.2e-08  Score=64.51  Aligned_cols=37  Identities=38%  Similarity=0.869  Sum_probs=34.8

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH  209 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd  209 (626)
                      +.+++++|++.|++|+|+|++.+|++|+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.66  E-value=9.4e-08  Score=88.92  Aligned_cols=236  Identities=13%  Similarity=0.248  Sum_probs=141.8

Q ss_pred             CcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcceeeeecC--CC-CCc---cCCCCCeeeecCCCCCCceeecCCcc
Q 006909          182 GCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTD--DG-GFG---SNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       182 ~~V~~l~fspdg~--~Latgs~Dg~i~iwd~~~~~~~~~~~~~--~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      ..|..+.|-.++.  .++..+.|.+|++|.+.......+.-..  ++ ...   .......+...........+      
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~ii------  159 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEII------  159 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEE------
Confidence            3577787765543  5555678999999998764322111000  00 000   00001111111111111111      


Q ss_pred             ccccCCCceee-ccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCe-eeEee---c-----CCCCeEEEEEeeCCCCE
Q 006909          254 FQIEESPLQEL-HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF---D-----HHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       254 ~~~~~~~~~~~-~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~-~~~~~---~-----~~~~v~~~~~~p~~~~~  323 (626)
                         ...|.+.. ..|...|+++.|+.+...+.++.|-.|.+|+++-.. +....   .     ...-|++..|+|...+.
T Consensus       160 ---aa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~  236 (460)
T COG5170         160 ---AAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV  236 (460)
T ss_pred             ---EeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence               12233333 578999999999988755555677889999986322 22221   1     23458899999977777


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEE-----------------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee
Q 006909          324 FISGSIDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  386 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~-----------------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~  386 (626)
                      +.-.+..|.|++-|++...+..                 +......|..+.|+++|+++++-+ --++++||++..+.+.
T Consensus       237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pi  315 (460)
T COG5170         237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPI  315 (460)
T ss_pred             EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCc
Confidence            8888889999999998543221                 122235688899999999888754 3589999999888777


Q ss_pred             eEEeecccccc------CCCCe---EEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909          387 EKVDFHDRKKT------SGNKI---TGIQFSRDESQRIMITSEDSKLRILD  428 (626)
Q Consensus       387 ~~~~~~~~~~~------~~~~i---~~l~~s~~~~~~l~~~s~dg~i~iwd  428 (626)
                      ..+.++.....      ....|   ..+.|+.|. ..+++|+..+..-+|-
T Consensus       316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp  365 (460)
T COG5170         316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYP  365 (460)
T ss_pred             eeechHHHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeec
Confidence            76655432111      11222   246777775 6788888877766664

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.63  E-value=4.1e-07  Score=87.95  Aligned_cols=160  Identities=14%  Similarity=0.159  Sum_probs=114.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      .+..+..+|++++||.+..+....++++......                                         .+...
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~-----------------------------------------~kl~~  102 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKG-----------------------------------------AKLLD  102 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCc-----------------------------------------ceeee
Confidence            4556677888999998888887777777652110                                         01111


Q ss_pred             ee--ccCccceEEEEEcCCCe-EEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909          263 EL--HGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  339 (626)
Q Consensus       263 ~~--~~h~~~V~~l~~s~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~  339 (626)
                      ..  ..-...+..+....... ...++....+.+|....+.+...++|-.-++.++|+| |+++++++..|..|++-...
T Consensus       103 ~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~yp  181 (390)
T KOG3914|consen  103 VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYP  181 (390)
T ss_pred             EeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecC
Confidence            11  11223333343333332 2245566677788877788888889999999999999 99999999999999998776


Q ss_pred             CCeEEE--eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909          340 EKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  385 (626)
Q Consensus       340 ~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~  385 (626)
                      .--.+.  ..+|+.-|..++.-++- .|++|+.|+++++||+.+++..
T Consensus       182 a~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  182 ATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             cccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcc
Confidence            544443  56799999999987654 5899999999999999988764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.62  E-value=5.5e-07  Score=82.02  Aligned_cols=92  Identities=16%  Similarity=0.180  Sum_probs=70.2

Q ss_pred             cEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE--EeccCCCCeEEEEEee-CCCEE
Q 006909          290 TVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICYIP-DGKGF  365 (626)
Q Consensus       290 ~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp-~g~~l  365 (626)
                      ..+.|+++..+.+..- .....|++++-+|...+.+++|+.||.+-+||.+.....  .+..|+.++..+-|+| ++..|
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            3555655433222111 233459999999977888899999999999999876432  3667899999999999 67899


Q ss_pred             EEEecCCcEEEEEcCC
Q 006909          366 IVGSITGTCHFYKASG  381 (626)
Q Consensus       366 ~~g~~dg~i~i~d~~~  381 (626)
                      ++++.||.+-.||..+
T Consensus       240 ft~sedGslw~wdas~  255 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAST  255 (319)
T ss_pred             eEecCCCcEEEEcCCC
Confidence            9999999999999875

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=2e-07  Score=88.16  Aligned_cols=146  Identities=15%  Similarity=0.236  Sum_probs=112.0

Q ss_pred             EEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909          325 ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      ++.+.+-.|-+-|+.++....+. .+..|.++.|...++.+..|..+|.|..+|++....-.. +  ..+...|+..|++
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~-~--~a~rlyh~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG-W--CAQRLYHDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC-c--ceEEEEcCcchhh
Confidence            55566778999999888766554 777899999999999999999999999999986522110 0  0012224578999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEeCC--c---ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          405 IQFSRDESQRIMITSEDSKLRILDGV--D---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~dg~i~iwd~~--~---~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++.-.-..++|++.+.+|+|++||.+  +   .+..+.+|.+...-.-+...+....|+++++|...+||.+..+
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence            88776223799999999999999976  2   3667777666555556667788899999999999999999976

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.56  E-value=3.1e-05  Score=80.30  Aligned_cols=177  Identities=12%  Similarity=0.066  Sum_probs=109.0

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCC--------eEEEEEee-CCCCEEEEEeCCCcEEEEeCCCCeEEEeccC
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGVCEKRVVDWADV  349 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~~p-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  349 (626)
                      ++.++.+..++.+..+|..+|+.+.......+        ...+.-+| ..+..++.++.+|.++.+|..+++..-....
T Consensus       190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~  269 (377)
T TIGR03300       190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA  269 (377)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence            35778888889999999999987665431110        00010011 0346788888899999999998876543332


Q ss_pred             CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909          350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       350 ~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~  429 (626)
                      .. ....  ...+..+++++.+|.+..+|..+++..........      ....+....  + ..+++++.+|.|+++|.
T Consensus       270 ~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~------~~~ssp~i~--g-~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       270 SS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY------RQLTAPAVV--G-GYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             CC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccC------CccccCEEE--C-CEEEEEeCCCEEEEEEC
Confidence            21 1122  23567888889999999999988865433211111      112222222  3 48889999999999998


Q ss_pred             CcceeeeeecCCCCCe-EEEEEcCCCCEEEEEeCCccEEEE
Q 006909          430 VDVIHKFKGLPKSGSQ-MSASFTTTGKHIISIGDDCRVYVW  469 (626)
Q Consensus       430 ~~~~~~~~~~~~~~~v-~~~~~sp~g~~l~s~s~dg~I~iw  469 (626)
                      .+.....+...+...+ .+..+.  +..|+.++.||.|+.|
T Consensus       338 ~tG~~~~~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       338 EDGSFVARLKTDGSGIASPPVVV--GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             CCCCEEEEEEcCCCccccCCEEE--CCEEEEEeCCceEEEe
Confidence            7655444433233222 222222  3458888899999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.56  E-value=4.6e-05  Score=73.41  Aligned_cols=192  Identities=16%  Similarity=0.131  Sum_probs=122.6

Q ss_pred             EcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe-ccCC----
Q 006909          276 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADVR----  350 (626)
Q Consensus       276 ~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~----  350 (626)
                      ...++.+++++.++.|..||..+|+.+..+.....+......  .+..++.++.++.|+.+|..++++.-. ....    
T Consensus        33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccc
Confidence            335678888899999999999999998888644433222222  466777777888999999998887643 2211    


Q ss_pred             CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc-c---CCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909          351 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-T---SGNKITGIQFSRDESQRIMITSEDSKLRI  426 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~---~~~~i~~l~~s~~~~~~l~~~s~dg~i~i  426 (626)
                      ...........+..++++..++.+..+|+.+++....... ..... .   ....+..-....++  .+++++.++.+.-
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~  187 (238)
T PF13360_consen  111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVA  187 (238)
T ss_dssp             STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEE
T ss_pred             ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEE
Confidence            1223334444588999999999999999999887544222 21000 0   00112232333343  6777777775433


Q ss_pred             EeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       427 wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      +|..+........  ...+.. ...+++..|+.++.++.|++||+.++.
T Consensus       188 ~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  188 VDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             EECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            3988776555432  222222 135678888888899999999999873

...

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.53  E-value=8.7e-06  Score=85.01  Aligned_cols=246  Identities=13%  Similarity=0.170  Sum_probs=162.2

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      |...-.++.|+|.| ++|-|+. ..|.+-|..+                                             .+
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s---------------------------------------------~q   46 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRS---------------------------------------------LQ   46 (1062)
T ss_pred             CcccccccccCccc-eEEEecC-ceEEEEehhh---------------------------------------------hh
Confidence            33346788999987 7777775 4577777765                                             45


Q ss_pred             CceeeccCccceEEEEEcCC------------C-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeC--CC-C
Q 006909          260 PLQELHGHKGDVLDLAWSNS------------N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI--DD-N  322 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~------------~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~--~~-~  322 (626)
                      .++.+.-|...|+.+.|.|-            . .|+++...|.|.+||...+..+..+. +..++..++|-|.  +. .
T Consensus        47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd  126 (1062)
T KOG1912|consen   47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD  126 (1062)
T ss_pred             hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh
Confidence            57788889999999999751            1 57788888999999999888888886 5668999999773  22 4


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCce---eeeEEeeccc--c
Q 006909          323 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDL---KLEKVDFHDR--K  395 (626)
Q Consensus       323 ~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~~~~--~  395 (626)
                      .|+.-....++.+|+..+|+..- .........|+.+.| |.+.+.+-+..|.+.+-+.-....   +.+.+.....  .
T Consensus       127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sd  206 (1062)
T KOG1912|consen  127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSD  206 (1062)
T ss_pred             eeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccc
Confidence            56666666899999998887654 334445566688988 667777777788777776533221   1111111110  0


Q ss_pred             -----------ccCCC------C---eEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCC
Q 006909          396 -----------KTSGN------K---ITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT  453 (626)
Q Consensus       396 -----------~~~~~------~---i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~  453 (626)
                                 ..+..      -   ...++|+|.- +.++-......+.|+|+.  .............++..+--.|.
T Consensus       207 l~~lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~  285 (1062)
T KOG1912|consen  207 LAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR  285 (1062)
T ss_pred             hhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence                       00000      0   1135678875 345555567789999976  34444444333334444333444


Q ss_pred             CCEEEEEeCCccEEEEECCC
Q 006909          454 GKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       454 g~~l~s~s~dg~I~iwd~~~  473 (626)
                      ...|++...||.+.+|-...
T Consensus       286 rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  286 RDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             cceEEEEecCCeEEEEEeec
Confidence            56799999999999998765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.53  E-value=2e-07  Score=96.28  Aligned_cols=212  Identities=17%  Similarity=0.288  Sum_probs=143.4

Q ss_pred             cccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          175 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      -.+.||+.+|+.+.|.|... .|||++.|-.+..||+.+.                                        
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp----------------------------------------  147 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP----------------------------------------  147 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCC----------------------------------------
Confidence            45679999999999998755 8999999999999999873                                        


Q ss_pred             ccccCCCceeeccCccceEEEEEcC-CCeEEEEeCCCcEEEeccCCCe-eeEee-cCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~-~~~l~s~s~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                          ..++.....-......++|+- ++.+++.+..+.|++||.+.|. ++..+ +|...|+.++|+......+.+.+.|
T Consensus       148 ----~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d  223 (1081)
T KOG0309|consen  148 ----HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND  223 (1081)
T ss_pred             ----CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence                233444444455667788884 4567777788899999997654 44444 4778899999987667789999999


Q ss_pred             CcEEEEeCCCC--eEEEeccCCCCeEEEEEeeCCCEEEEEec--CCcEEEEEcCCCceeeeEE---eeccccccCCCCeE
Q 006909          331 GKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKV---DFHDRKKTSGNKIT  403 (626)
Q Consensus       331 g~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~i~  403 (626)
                      |+|+.||....  +.........+|.--++.|-|+..++--.  +..+.+++-++........   .......+|...|.
T Consensus       224 ~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~  303 (1081)
T KOG0309|consen  224 GTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL  303 (1081)
T ss_pred             CceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence            99999998643  33344555667777778886654444322  2244444433322221110   01112344556666


Q ss_pred             EEEEcCCC---------CcEEEEEeCCCcEEEEeCC
Q 006909          404 GIQFSRDE---------SQRIMITSEDSKLRILDGV  430 (626)
Q Consensus       404 ~l~~s~~~---------~~~l~~~s~dg~i~iwd~~  430 (626)
                      .+.|-..+         ...|++=+.|.++++|-+.
T Consensus       304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             HHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            66553321         2479999999999999754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.51  E-value=0.00017  Score=69.86  Aligned_cols=188  Identities=14%  Similarity=0.122  Sum_probs=121.3

Q ss_pred             EEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc--
Q 006909          273 DLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--  348 (626)
Q Consensus       273 ~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--  348 (626)
                      +++|.+ ++ ++++--..+.|..|+..++.... +.... ...+++...+ ..++.+... .+.++|..+++...+..  
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence            567887 56 45555568899999998776543 33333 7777887415 555555554 45666998887654333  


Q ss_pred             ----CCCCeEEEEEeeCCCEEEEEecC--------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          349 ----VRDVISAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       349 ----~~~~i~~i~~sp~g~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                          .....+.+++.|+|+..++....        |.+..++.. .+.... .  ..     ......|+|+|++..+++
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~--~~-----~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-A--DG-----LGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-E--EE-----ESSEEEEEEETTSSEEEE
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-e--cC-----cccccceEECCcchheee
Confidence                33567899999999966665433        456666665 332211 1  11     146789999999855556


Q ss_pred             EEeCCCcEEEEeCC--cc----eeeeeecC-CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          417 ITSEDSKLRILDGV--DV----IHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       417 ~~s~dg~i~iwd~~--~~----~~~~~~~~-~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      +-+..+.|..++..  ..    ...+.... ..+..-.+++..+|++.++....+.|.+++.+.
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G  214 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG  214 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence            77888999999864  21    12222221 223478899999999888888889999999874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.50  E-value=2.3e-06  Score=82.86  Aligned_cols=153  Identities=14%  Similarity=0.101  Sum_probs=104.2

Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEeccCCCe----eeEeecCCCCeEEEEEeeCCCCEEEEEeCCC---cEEEEeCCCCeE
Q 006909          272 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRV  343 (626)
Q Consensus       272 ~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---~v~iwd~~~~~~  343 (626)
                      ..+..++++ +++.+..++...++++....    ++..+.....-+++.|.. +......+..-|   .+.+|....+..
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccCc
Confidence            334455666 56666666666666664332    333333444445555555 444444444444   455555555777


Q ss_pred             EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909          344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK  423 (626)
Q Consensus       344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~  423 (626)
                      ....+|-..++.++++||+++++++..|..|++-....... .     +.-.-+|...|..++..++  +.|++++.|++
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-I-----esfclGH~eFVS~isl~~~--~~LlS~sGD~t  216 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-I-----ESFCLGHKEFVSTISLTDN--YLLLSGSGDKT  216 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-h-----hhhccccHhheeeeeeccC--ceeeecCCCCc
Confidence            88899999999999999999999999999999977654332 1     2223345688999999987  57999999999


Q ss_pred             EEEEeCCcce
Q 006909          424 LRILDGVDVI  433 (626)
Q Consensus       424 i~iwd~~~~~  433 (626)
                      |++||..++.
T Consensus       217 lr~Wd~~sgk  226 (390)
T KOG3914|consen  217 LRLWDITSGK  226 (390)
T ss_pred             EEEEecccCC
Confidence            9999977543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=9.3e-08  Score=100.43  Aligned_cols=226  Identities=17%  Similarity=0.187  Sum_probs=150.7

Q ss_pred             cccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCC
Q 006909          165 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  244 (626)
Q Consensus       165 ~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (626)
                      ..-|+++...++++.|+..-+|++|+-+.++|+.|+..|.|+++++.+|                               
T Consensus      1085 ~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG------------------------------- 1133 (1516)
T KOG1832|consen 1085 QFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG------------------------------- 1133 (1516)
T ss_pred             hhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc-------------------------------
Confidence            4457888889999999999999999999999999999999999999884                               


Q ss_pred             ceeecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCC-cEEEeccCC-CeeeEeecCCCCeEEEEEeeCC
Q 006909          245 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDK-TVRMWQVGC-NQCLNVFDHHNYVTCVQFNPID  320 (626)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~-~v~iwd~~~-~~~~~~~~~~~~v~~~~~~p~~  320 (626)
                                    .......+|.+.|+.+.-+.+|  .|.+++... ...+|++.. +...++|.   .-.++.|+. .
T Consensus      1134 --------------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---ed~~vkFsn-~ 1195 (1516)
T KOG1832|consen 1134 --------------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---EDKAVKFSN-S 1195 (1516)
T ss_pred             --------------cccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc---ccceeehhh-h
Confidence                          3355667899999999988777  344444433 578999853 34444443   345778886 4


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEe-----ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc
Q 006909          321 DNYFISGSIDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  395 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~~~~~-----~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  395 (626)
                      -..-+.|.....+.+||+.++.....     ......-++..|+|+.+.++   .||  .+||++..+.... +.   +.
T Consensus      1196 ~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~-FD---~f 1266 (1516)
T KOG1832|consen 1196 LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHR-FD---QF 1266 (1516)
T ss_pred             HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhh-hh---hh
Confidence            44444555556789999998765432     12223346788999887765   344  5799987643211 10   00


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909          396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI  460 (626)
Q Consensus       396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~  460 (626)
                          .--..=.|+|.| ..+++.+.     |||+++....-..  ..-.-..+.|...|..++..
T Consensus      1267 ----t~~~~G~FHP~g-~eVIINSE-----IwD~RTF~lLh~V--P~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1267 ----TDYGGGGFHPSG-NEVIINSE-----IWDMRTFKLLHSV--PSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             ----eecccccccCCC-ceEEeech-----hhhhHHHHHHhcC--ccccceEEEeccCccchhhh
Confidence                011122589998 56776665     8998753221111  12234567888888776643

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.46  E-value=1.3e-06  Score=79.67  Aligned_cols=196  Identities=11%  Similarity=0.189  Sum_probs=120.0

Q ss_pred             eEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEee---------CCCCEEEEEeCCCcEEEEeC
Q 006909          271 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNP---------IDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       271 V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p---------~~~~~l~s~s~dg~v~iwd~  338 (626)
                      |+.+.+..+-.|+++..++.+.......+.+....+   ..++..+++.+.         ..++-++++..||.+.+++.
T Consensus        39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            666666666678888888777776665554443322   112222222211         14567999999999999988


Q ss_pred             CCCeEEE--eccCCCCeEEEEEeeCCCEEEEEe-----cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          339 CEKRVVD--WADVRDVISAICYIPDGKGFIVGS-----ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       339 ~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      +.-..+.  .......--+.++...++.+.++.     .-+..+.|+++........       ......|++++-+|..
T Consensus       119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-------~~~~~~v~~l~~hp~q  191 (319)
T KOG4714|consen  119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS-------KKALDAVTALCSHPAQ  191 (319)
T ss_pred             hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc-------ccccccchhhhCCccc
Confidence            6511110  011111112233334454444432     1234555655433322111       1112459999999987


Q ss_pred             CcEEEEEeCCCcEEEEeCCcceeeee-ecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCC
Q 006909          412 SQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       412 ~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      ...+++|+.||.+-+||.++...... ...|...+..+.|+| ++..|+++++||.+..||..+
T Consensus       192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            77889999999999999886532221 134889999999998 568999999999999999875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.45  E-value=8e-05  Score=69.66  Aligned_cols=191  Identities=14%  Similarity=0.134  Sum_probs=105.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909          184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  263 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (626)
                      =..++||||+.+||.+...|+|+++|+.......+.....                                       .
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~---------------------------------------~   86 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMS---------------------------------------F   86 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccc---------------------------------------c
Confidence            3469999999999999999999999997632221111000                                       0


Q ss_pred             eccCccceEEEEEcCC-------CeEEEEeCCCcEEEeccC-----CCeeeEeec----CCCCeEEEEEeeCCCCEEEEE
Q 006909          264 LHGHKGDVLDLAWSNS-------NYLLSCSMDKTVRMWQVG-----CNQCLNVFD----HHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~-------~~l~s~s~d~~v~iwd~~-----~~~~~~~~~----~~~~v~~~~~~p~~~~~l~s~  327 (626)
                      ...-...|..+.|.+.       ..|+.-..+|.++-|-+.     ..+....|.    +...|+++.++| ..++|+.|
T Consensus        87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVg  165 (282)
T PF15492_consen   87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVG  165 (282)
T ss_pred             CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEe
Confidence            0012345555555421       157777777777777652     223344443    467899999999 77887777


Q ss_pred             eCCCc-EEEEeCCCCeEEEeccCCCCeEEEEE---eeCCCEEEEEecCCc------EEEEEcCCCceeeeEEeecccccc
Q 006909          328 SIDGK-VRIWGVCEKRVVDWADVRDVISAICY---IPDGKGFIVGSITGT------CHFYKASGNDLKLEKVDFHDRKKT  397 (626)
Q Consensus       328 s~dg~-v~iwd~~~~~~~~~~~~~~~i~~i~~---sp~g~~l~~g~~dg~------i~i~d~~~~~~~~~~~~~~~~~~~  397 (626)
                      +.... -..+.          .....+++-..   .|..+. ++...++.      ..++.+-+..       +..+...
T Consensus       166 G~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~-------~fs~~~~  227 (282)
T PF15492_consen  166 GCEQNQDGMSK----------ASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFK-------FFSRQGQ  227 (282)
T ss_pred             ccCCCCCcccc----------ccccCceEEEEcCCCCcEEE-ccccCccccccccccceeecccee-------eeecccc
Confidence            64322 00000          11111111111   111111 11111111      1122221111       1111122


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI  433 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~  433 (626)
                      ....|..|..|||| ..|++...+|.|.+|++....
T Consensus       228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcch
Confidence            24789999999998 799999999999999976543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=8.2e-05  Score=79.07  Aligned_cols=198  Identities=21%  Similarity=0.258  Sum_probs=130.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      .|+|  +++.+..+|.|+.+|.|.+.+-.                                              .+.++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s----------------------------------------------~~~~~   58 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSS----------------------------------------------FQLIR   58 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEeccc----------------------------------------------ceeee
Confidence            4554  56788899999999988777643                                              12235


Q ss_pred             eeccCccc-eEEEEEcCC-CeEEEEeCCC-----cEEEeccCC------Ceee---Eeec-----CCCCeEEEEEeeCCC
Q 006909          263 ELHGHKGD-VLDLAWSNS-NYLLSCSMDK-----TVRMWQVGC------NQCL---NVFD-----HHNYVTCVQFNPIDD  321 (626)
Q Consensus       263 ~~~~h~~~-V~~l~~s~~-~~l~s~s~d~-----~v~iwd~~~------~~~~---~~~~-----~~~~v~~~~~~p~~~  321 (626)
                      .++.+... |..+....+ +.|++.+.|+     .|+||+++.      .+++   +.+.     .+.++.+++.+. +-
T Consensus        59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l  137 (933)
T KOG2114|consen   59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DL  137 (933)
T ss_pred             hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cc
Confidence            56666666 444433333 3788777665     499999853      3444   2333     345788999998 88


Q ss_pred             CEEEEEeCCCcEEEEeCC-----CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909          322 NYFISGSIDGKVRIWGVC-----EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  396 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~-----~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  396 (626)
                      +.+|+|-.+|.|..+.-.     ..+.......+.+|+.+.+..+++.++.......|.+|.+.+..........     
T Consensus       138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~-----  212 (933)
T KOG2114|consen  138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDN-----  212 (933)
T ss_pred             cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeecc-----
Confidence            899999999999988421     1233334566789999999999988555555668999999865522222332     


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeee
Q 006909          397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK  437 (626)
Q Consensus       397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~  437 (626)
                       ++..+.|..+++...+ ++++ .+..+.+|+.......+.
T Consensus       213 -~G~~lnCss~~~~t~q-fIca-~~e~l~fY~sd~~~~cfa  250 (933)
T KOG2114|consen  213 -NGISLNCSSFSDGTYQ-FICA-GSEFLYFYDSDGRGPCFA  250 (933)
T ss_pred             -CCccceeeecCCCCcc-EEEe-cCceEEEEcCCCcceeee
Confidence             3478899999887422 3333 345788998764443333

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.37  E-value=0.00053  Score=66.24  Aligned_cols=232  Identities=12%  Similarity=0.109  Sum_probs=142.2

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCc-EEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          184 IWTLKFSP-DGRYLASGGEDGV-VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       184 V~~l~fsp-dg~~Latgs~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      ...++.+| .+..++.+-.-|+ ..+||..++......                                     ...+-
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-------------------------------------~a~~g   49 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-------------------------------------WAPPG   49 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-------------------------------------cCCCC
Confidence            44577788 5556777766664 678888876543221                                     12334


Q ss_pred             eeeccCccceEEEEEcCCC-eEEEE-----eCCCcEEEeccC-CCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe-----
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSC-----SMDKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS-----  328 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~-----s~d~~v~iwd~~-~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s-----  328 (626)
                      +.|.||.      .|+++| +|++.     +..|.|-|||.. +.+.+..+. +.-....+.+.| ++..|+.+-     
T Consensus        50 RHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~T  122 (305)
T PF07433_consen   50 RHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIET  122 (305)
T ss_pred             CEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCcc
Confidence            5677775      689998 66654     334789999998 566666774 444556778899 887777652     


Q ss_pred             -------------CCCcEEEEeCCCCeEEEe-----ccCCCCeEEEEEeeCCCEEEEEecCCc-------EEEEEcCCCc
Q 006909          329 -------------IDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITGT-------CHFYKASGND  383 (626)
Q Consensus       329 -------------~dg~v~iwd~~~~~~~~~-----~~~~~~i~~i~~sp~g~~l~~g~~dg~-------i~i~d~~~~~  383 (626)
                                   .+..+.+.|..+++++..     ..++..|..+++.++|..++..-..|.       +-+++.... 
T Consensus       123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-  201 (305)
T PF07433_consen  123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-  201 (305)
T ss_pred             CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-
Confidence                         123466667777776653     346678999999999865555433331       223322221 


Q ss_pred             eeeeEEeecc-ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 006909          384 LKLEKVDFHD-RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       384 ~~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~  462 (626)
                        ...+.... ......+.+-+|++++++....+++-..+.+.+||..+....-..  .-..+..++-.+++ ++++.+ 
T Consensus       202 --~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGva~~~~~-f~~ssG-  275 (305)
T PF07433_consen  202 --LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGVAPTDDG-FLVSSG-  275 (305)
T ss_pred             --ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeeeeecCCc-eEEeCC-
Confidence              11111110 011224678999999998544556667789999997765433322  33456667766666 666654 


Q ss_pred             CccE
Q 006909          463 DCRV  466 (626)
Q Consensus       463 dg~I  466 (626)
                      .|.+
T Consensus       276 ~G~~  279 (305)
T PF07433_consen  276 QGQL  279 (305)
T ss_pred             CccE
Confidence            3443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=9e-06  Score=85.52  Aligned_cols=178  Identities=16%  Similarity=0.166  Sum_probs=121.7

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee
Q 006909          307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  386 (626)
Q Consensus       307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~  386 (626)
                      ....++|++++   +.+|+.|+.+|.|++++..... .....|...      ..+|.++++++.||++.|..+-+.+...
T Consensus        38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            34567788884   6899999999999999987654 333444333      5689999999999999998887665432


Q ss_pred             eEEeeccccccCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909          387 EKVDFHDRKKTSGNKITGIQFSRD----ESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI  460 (626)
Q Consensus       387 ~~~~~~~~~~~~~~~i~~l~~s~~----~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~  460 (626)
                       +..++       .++.+++++|+    .++.+++|+..| +.++.-+  ........+...++|.+++|.  |++||-+
T Consensus       108 -~~df~-------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa  176 (846)
T KOG2066|consen  108 -QYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA  176 (846)
T ss_pred             -eEecC-------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe
Confidence             23332       68999999998    346899999988 7777622  122222455578899999996  8888888


Q ss_pred             eCCccEEEEECCCCCCCCCC-------ccCCccceeeeccCCcEEEEecCCCCc
Q 006909          461 GDDCRVYVWNYDELCFPSSK-------QKNSVRSCEHFFSEGVSVAVQWPGIGT  507 (626)
Q Consensus       461 s~dg~I~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~av~~s~~~~  507 (626)
                      +++| |+|||+...+.....       ........+.|.+ ...+.++|...-.
T Consensus       177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~  228 (846)
T KOG2066|consen  177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVK  228 (846)
T ss_pred             cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEE
Confidence            7666 999999887322111       1111122233444 4556888876533

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=2.3e-05  Score=82.62  Aligned_cols=186  Identities=16%  Similarity=0.235  Sum_probs=132.6

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      .+.++|++++  +++|+-|..+|.|++.+...                                              .+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~----------------------------------------------~~   70 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG----------------------------------------------NP   70 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC----------------------------------------------cc
Confidence            4568888887  67999999999999998764                                              12


Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCC-----CCEEEEEeCCCcEE
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID-----DNYFISGSIDGKVR  334 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~s~s~dg~v~  334 (626)
                       .+...|...      ..+| +++|||.||+|.|-.+.+.+...++....++.+++++| +     .+.+++|+..| +.
T Consensus        71 -~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P-d~~~~~sk~fv~GG~ag-lv  141 (846)
T KOG2066|consen   71 -KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP-DFSRQQSKQFVSGGMAG-LV  141 (846)
T ss_pred             -ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc-chhhhhhhheeecCcce-EE
Confidence             222334433      3345 99999999999999999999989999999999999999 5     56799999888 77


Q ss_pred             EEeCC---CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          335 IWGVC---EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       335 iwd~~---~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      ++.-+   ....+......++|.+++|.  |+++|=++.+ .|++||+...+.... +...............+.|.++.
T Consensus       142 L~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~-Gv~vyd~~~~~~l~~-i~~p~~~~R~e~fpphl~W~~~~  217 (846)
T KOG2066|consen  142 LSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDD-GVKVYDTPTRQRLTN-IPPPSQSVRPELFPPHLHWQDED  217 (846)
T ss_pred             EehhhhhcCccceeeecCccceEEEEec--CcEEEEecCC-CcEEEeccccceeec-cCCCCCCCCcccCCCceEecCCC
Confidence            77532   23333456778899999996  6566666544 589999987765433 22222222233445678898874


Q ss_pred             CcEEEEEeCCCcEEEEeCC
Q 006909          412 SQRIMITSEDSKLRILDGV  430 (626)
Q Consensus       412 ~~~l~~~s~dg~i~iwd~~  430 (626)
                        .|+.|= ..+|+|..++
T Consensus       218 --~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  218 --RLVIGW-GDSVKICSIK  233 (846)
T ss_pred             --eEEEec-CCeEEEEEEe
Confidence              555553 4467777655

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.33  E-value=1.3e-05  Score=85.37  Aligned_cols=177  Identities=12%  Similarity=0.152  Sum_probs=136.1

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeecCCC-CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEE
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICY  358 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~  358 (626)
                      .++-|+....+..+|+.+.+..+...... .|+-++.   +++.+.+|...|+|.+-|.++-+.+. +..|.+.|..+. 
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD-  224 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD-  224 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee-
Confidence            57777777788889999888877765333 4555554   67899999999999999999877654 678888887665 


Q ss_pred             eeCCCEEEEEec---------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe-
Q 006909          359 IPDGKGFIVGSI---------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD-  428 (626)
Q Consensus       359 sp~g~~l~~g~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd-  428 (626)
                       -.|+.|++++.         |.-|++||++..+.... +.++       ....-+.|.|.-...+++++..|...+-| 
T Consensus       225 -v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-I~~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~  295 (1118)
T KOG1275|consen  225 -VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-IQFP-------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDT  295 (1118)
T ss_pred             -ccCCeEEEeecccccccccccchhhhhhhhhhhccCC-cccc-------cCchhhhhcccccceEEEEecccceeeccc
Confidence             46888888765         45689999998765322 2222       22355778888778999999999999999 


Q ss_pred             --CCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          429 --GVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       429 --~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                        +.++ ...+...+....+.++++|++|+.++.|..+|.|.+|.
T Consensus       296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence              4444 44444555666799999999999999999999999998

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=9.8e-05  Score=71.81  Aligned_cols=82  Identities=16%  Similarity=0.208  Sum_probs=72.3

Q ss_pred             CceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          260 PLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      +...+.+|...|.+++|+|.  |++..++.+.+|+|.|+++..++..+.....+++++|.-.+.+++..|..+|.|.+||
T Consensus       185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence            34567788999999999986  4788999999999999999999998887799999999986778889999999999999


Q ss_pred             CCCC
Q 006909          338 VCEK  341 (626)
Q Consensus       338 ~~~~  341 (626)
                      ++..
T Consensus       265 ~R~~  268 (463)
T KOG1645|consen  265 MRQP  268 (463)
T ss_pred             ccCC
Confidence            9863

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=7.2e-06  Score=80.48  Aligned_cols=203  Identities=13%  Similarity=0.167  Sum_probs=143.4

Q ss_pred             cCccceEEEEEcCCCeEEEEeCCCcEEEeccCC--C-eeeEee-cCCCCeEEEEEeeCCCCEEEEEeC-CCcEEEEeCCC
Q 006909          266 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC--N-QCLNVF-DHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCE  340 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~--~-~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~-dg~v~iwd~~~  340 (626)
                      -|...|+.+......++++++.||.++.|.-..  + +.+..+ .|...|.+++.+- ++..+.|++. |..++++|+..
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence            378888888877778999999999999997543  1 222223 3778888888888 8999999777 99999999977


Q ss_pred             CeEEEeccCCCCeEEEEEee-CC---CEEEE-EecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          341 KRVVDWADVRDVISAICYIP-DG---KGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       341 ~~~~~~~~~~~~i~~i~~sp-~g---~~l~~-g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      -..............+.|.. .|   ..+++ ...+|.+.++|-....++...     ....|..+|..+.+.+.+ ..+
T Consensus        86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~-----fkklH~sPV~~i~y~qa~-Ds~  159 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY-----FKKLHFSPVKKIRYNQAG-DSA  159 (558)
T ss_pred             cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce-----ecccccCceEEEEeeccc-cce
Confidence            55443333222222233322 22   13333 345789999998766543321     133455899999999987 678


Q ss_pred             EEEeCCCcEEEEeCCccee---------------eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          416 MITSEDSKLRILDGVDVIH---------------KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~~~---------------~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      ++....|.|.-|......+               .+..........++.|+|+|..+.+-+.|..|+++++.++.
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence            8888899999998652110               11112245677899999999999999999999999999873

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.27  E-value=1.5e-06  Score=57.02  Aligned_cols=36  Identities=33%  Similarity=0.722  Sum_probs=33.7

Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEec
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ  295 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd  295 (626)
                      ++.++.+|.+.|++|+|+|++ +|++++.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            568899999999999999986 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.27  E-value=0.00018  Score=79.37  Aligned_cols=200  Identities=12%  Similarity=0.161  Sum_probs=128.1

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      -.+.|.++.|..++.-++.+..+|.|.+-|..+...                                            
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--------------------------------------------  102 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL--------------------------------------------  102 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccce--------------------------------------------
Confidence            346899999999999999999999999988776322                                            


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEecc----CCCeee-------------------Eeec---------
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV----GCNQCL-------------------NVFD---------  306 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~----~~~~~~-------------------~~~~---------  306 (626)
                        .....-...|.+++|+||+ .++..+..+++.+-.-    -.-+.+                   ..|.         
T Consensus       103 --eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~  180 (1265)
T KOG1920|consen  103 --EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAAR  180 (1265)
T ss_pred             --eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccc
Confidence              2222335789999999987 6666666666665421    111111                   1111         


Q ss_pred             -------------CCCCeEEEEEeeCCCCEEEEE-----eCCCcEEEEeCCCCeEEEe-ccCCCCeEEEEEeeCCCEEEE
Q 006909          307 -------------HHNYVTCVQFNPIDDNYFISG-----SIDGKVRIWGVCEKRVVDW-ADVRDVISAICYIPDGKGFIV  367 (626)
Q Consensus       307 -------------~~~~v~~~~~~p~~~~~l~s~-----s~dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~  367 (626)
                                   ..+.=+.|.|-- +|.++++.     .....|++||.. +.+-.. ....+.-.+++|-|.|..+++
T Consensus       181 ~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~  258 (1265)
T KOG1920|consen  181 QKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAA  258 (1265)
T ss_pred             ccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEee
Confidence                         011123588877 89898873     223789999987 443322 222344568999999999887


Q ss_pred             Ee---cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE---EeCCCcEEEEeCCcc
Q 006909          368 GS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI---TSEDSKLRILDGVDV  432 (626)
Q Consensus       368 g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~---~s~dg~i~iwd~~~~  432 (626)
                      -.   .++.|.+|.-++-...-..+.    .+.....+..++|+.++ ..|++   ......|++|-+.+.
T Consensus       259 iq~~~sd~~IvffErNGL~hg~f~l~----~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  259 IQCKTSDSDIVFFERNGLRHGEFVLP----FPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecCCCCcEEEEecCCccccccccC----CcccccchheeeecCCC-CceeeeecccccceEEEEEecCe
Confidence            43   456788988765433211111    12223459999999996 56766   344455999987653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.26  E-value=2.4e-05  Score=83.37  Aligned_cols=148  Identities=16%  Similarity=0.238  Sum_probs=112.7

Q ss_pred             ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC---------CCcEEEEeCC
Q 006909          270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---------DGKVRIWGVC  339 (626)
Q Consensus       270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~---------dg~v~iwd~~  339 (626)
                      .|.-+.. .+..+.+|...|+|.+-|..+.+.++++. |.+.|..+..   .|+.|++++.         |.-|+|||++
T Consensus       179 ~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  179 GVTIMRY-NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             ceEEEEe-cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhh
Confidence            3554443 23478899999999999999999999996 9999998877   6889998875         4568999999


Q ss_pred             CCeEEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEE---cCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          340 EKRVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYK---ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       340 ~~~~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      .-+.+..........-+.|+|. ...+++.+..|...+-|   +.+.......+...      +..+..+.+++++ +.+
T Consensus       255 mmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~------~s~i~~fDiSsn~-~al  327 (1118)
T KOG1275|consen  255 MMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN------GSGISAFDISSNG-DAL  327 (1118)
T ss_pred             hhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC------CCcceeEEecCCC-ceE
Confidence            8776655554444466778884 46788999999999999   44332222222211      2559999999997 799


Q ss_pred             EEEeCCCcEEEEe
Q 006909          416 MITSEDSKLRILD  428 (626)
Q Consensus       416 ~~~s~dg~i~iwd  428 (626)
                      +.|..+|.|.+|.
T Consensus       328 afgd~~g~v~~wa  340 (1118)
T KOG1275|consen  328 AFGDHEGHVNLWA  340 (1118)
T ss_pred             EEecccCcEeeec
Confidence            9999999999997

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.24  E-value=0.00034  Score=72.96  Aligned_cols=188  Identities=12%  Similarity=0.041  Sum_probs=111.3

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEE--
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAI--  356 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i--  356 (626)
                      ++.++.++.++.+..+|..+|+.+........+.+--.-  .+..++.++.++.|..+|..+++.+-......+...+  
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            457788888999999999999998887654444332111  2456777888899999999998876332222111000  


Q ss_pred             EEee--CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccC-CCCeEEEEEcC--CCCcEEEEEeCCCcEEEEeCCc
Q 006909          357 CYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQFSR--DESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       357 ~~sp--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~s~--~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      .-+|  .+..+++++.+|.+..+|..+++..... ......... ......+..+|  .+ ..+++++.++.+..+|..+
T Consensus       198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~t  275 (394)
T PRK11138        198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRS  275 (394)
T ss_pred             CCCCEEECCEEEEEcCCCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCC
Confidence            0011  2346777888999999998887754331 111000000 00000111111  12 3677777889999999876


Q ss_pred             ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          432 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       432 ~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .....+...  .....+.  ..+..|+.++.+|.++.+|..++
T Consensus       276 G~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG  314 (394)
T PRK11138        276 GQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGG  314 (394)
T ss_pred             CCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCC
Confidence            655544321  1111122  24667777888899999998776

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.19  E-value=6.5e-06  Score=78.14  Aligned_cols=153  Identities=16%  Similarity=0.265  Sum_probs=115.9

Q ss_pred             EEcCC--CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-----eEEEec
Q 006909          275 AWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-----RVVDWA  347 (626)
Q Consensus       275 ~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~-----~~~~~~  347 (626)
                      +|+-+  ++-++.+.+..|-+-|+++|.. +.|...+.|.++.|.. .+++++.|..+|.|..+|++.+     ......
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl  295 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL  295 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccc-cccccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence            66532  4457777888899999987744 4556778899999998 8999999999999999999864     355667


Q ss_pred             cCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909          348 DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  426 (626)
Q Consensus       348 ~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i  426 (626)
                      -|...|+++..-. ++++|++.+.+|+|++||++.-+.........+|...+.  ..-+...+.. ..++++++|...+|
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a--~l~~~v~~ee-g~I~s~GdDcytRi  372 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA--YLPAHVKEEE-GSIFSVGDDCYTRI  372 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc--cccccccccc-ceEEEccCeeEEEE
Confidence            7889999998777 889999999999999999987776544444454432221  1122334444 58888999999999


Q ss_pred             EeCCcc
Q 006909          427 LDGVDV  432 (626)
Q Consensus       427 wd~~~~  432 (626)
                      |.+...
T Consensus       373 Wsl~~g  378 (425)
T KOG2695|consen  373 WSLDSG  378 (425)
T ss_pred             EecccC
Confidence            998754

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.19  E-value=1.4e-06  Score=91.81  Aligned_cols=195  Identities=16%  Similarity=0.188  Sum_probs=134.6

Q ss_pred             CCceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC--cEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG--KVR  334 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg--~v~  334 (626)
                      .+.+.+..|+...+|++|+.+ +.|+.|+..|.|+++++.+|....... |..+|+.+.-+. +|..+++.+.-.  -..
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence            456678889999999999975 499999999999999999998887775 999999999888 888776655433  467


Q ss_pred             EEeCCC-CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          335 IWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       335 iwd~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      +|++.. +...   ..-..-.++.|+.....-++|+......+||+.+.......+...   .+....-.+..|+|+. .
T Consensus      1171 LW~~~s~~~~~---Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~---~~~~y~~n~a~FsP~D-~ 1243 (1516)
T KOG1832|consen 1171 LWDASSTGGPR---HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT---VTSSYSNNLAHFSPCD-T 1243 (1516)
T ss_pred             HhccccccCcc---ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc---hhhhhhccccccCCCc-c
Confidence            898864 1111   112334567888776667778888899999999876543311111   0111233677899986 4


Q ss_pred             EEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          414 RIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +++-   ||  .+||.+..  ++.|...  . .-..-.|+|.|.-++..++     |||+.+.
T Consensus      1244 LIln---dG--vLWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1244 LILN---DG--VLWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred             eEee---Cc--eeeeeccHHHHhhhhhh--e-ecccccccCCCceEEeech-----hhhhHHH
Confidence            4442   33  47887744  2223221  1 1123468999999998765     8999885

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.17  E-value=0.00029  Score=72.57  Aligned_cols=116  Identities=16%  Similarity=0.183  Sum_probs=86.0

Q ss_pred             ecCCCCeEEEEEeeCCCCEEEEEe----CCCc----EEEEeCCCCeEE----EeccCCCCeEEEEEeeCCCEEEEEecCC
Q 006909          305 FDHHNYVTCVQFNPIDDNYFISGS----IDGK----VRIWGVCEKRVV----DWADVRDVISAICYIPDGKGFIVGSITG  372 (626)
Q Consensus       305 ~~~~~~v~~~~~~p~~~~~l~s~s----~dg~----v~iwd~~~~~~~----~~~~~~~~i~~i~~sp~g~~l~~g~~dg  372 (626)
                      ........++.|+..+++.+.+..    .+|.    -.+|++..+++.    .....+..+.+++++|+...++.|+.||
T Consensus       202 irTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg  281 (545)
T PF11768_consen  202 IRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG  281 (545)
T ss_pred             EEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC
Confidence            344555577888875666666543    3343    356776655432    3456788999999999999999999999


Q ss_pred             cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 006909          373 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  430 (626)
Q Consensus       373 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~  430 (626)
                      .|.+||...+.....+.         .-.++.++|+|+| ..+++|+..|.+.+||+.
T Consensus       282 SiiLyD~~~~~t~~~ka---------~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  282 SIILYDTTRGVTLLAKA---------EFIPTLIAWHPDG-AIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             eEEEEEcCCCeeeeeee---------cccceEEEEcCCC-cEEEEEcCCceEEEEEee
Confidence            99999987664332211         2467899999998 799999999999999965

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.15  E-value=0.0031  Score=61.00  Aligned_cols=200  Identities=13%  Similarity=0.148  Sum_probs=127.7

Q ss_pred             EEEEEcCCC--eEEEEeCCCc-EEEeccCCCeeeEeecCCC---CeEEEEEeeCCCCEEEEEeC-----CCcEEEEeCCC
Q 006909          272 LDLAWSNSN--YLLSCSMDKT-VRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSI-----DGKVRIWGVCE  340 (626)
Q Consensus       272 ~~l~~s~~~--~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~s~s~-----dg~v~iwd~~~  340 (626)
                      ..++.+|..  .++.+-.-|+ ..+||..+++....+....   .--...|+| ++++|++.-.     .|.|-|||...
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence            346667743  5556655554 6789999998887774211   122468999 9999998754     37899999983


Q ss_pred             --CeEEEeccCCCCeEEEEEeeCCCEEEEEec------------------CCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          341 --KRVVDWADVRDVISAICYIPDGKGFIVGSI------------------TGTCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       341 --~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                        .++-.+..+.-....+.+.|||+.|+++..                  +.++.+.|..++.+.-. ..+.  ...+..
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q-~~Lp--~~~~~l  163 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ-VELP--PDLHQL  163 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee-eecC--cccccc
Confidence              233346666666778889999988888632                  23455566666654322 2221  112346


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCC-------cEEEEeCCcceeeeee-----cCCCCCeEEEEEcCCCCEEEEEe-CCccEE
Q 006909          401 KITGIQFSRDESQRIMITSEDS-------KLRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIG-DDCRVY  467 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg-------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~  467 (626)
                      .|..+++.++| ..++..-..|       -|-+++.......+..     ..-...+-++++++++.++++.+ .-+.+.
T Consensus       164 SiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~  242 (305)
T PF07433_consen  164 SIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA  242 (305)
T ss_pred             ceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence            89999999997 3333332222       2445554433333322     12346789999999999886665 568999


Q ss_pred             EEECCCCCC
Q 006909          468 VWNYDELCF  476 (626)
Q Consensus       468 iwd~~~~~~  476 (626)
                      +||..++..
T Consensus       243 ~~d~~tg~~  251 (305)
T PF07433_consen  243 VWDAATGRL  251 (305)
T ss_pred             EEECCCCCE
Confidence            999998743

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.15  E-value=0.0015  Score=66.83  Aligned_cols=231  Identities=13%  Similarity=0.135  Sum_probs=121.0

Q ss_pred             ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-C-----------------CCCeEEEEEeeCCCCEEEEEeC
Q 006909          268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-H-----------------HNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~-----------------~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                      ...+....|+|+|..++--.++.|.+++..++...+... .                 -+.-..+.|+| ++++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEE
Confidence            567888999999844444456789999987775544321 1                 11235688999 9888886543


Q ss_pred             C-Cc-----------------------------------EEEEeCCCCeEEEe------ccCCCCeEEEEEeeCCCEEEE
Q 006909          330 D-GK-----------------------------------VRIWGVCEKRVVDW------ADVRDVISAICYIPDGKGFIV  367 (626)
Q Consensus       330 d-g~-----------------------------------v~iwd~~~~~~~~~------~~~~~~i~~i~~sp~g~~l~~  367 (626)
                      | ..                                   +.|+|+.+++...+      ......+..+.|.++++.|++
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            3 11                                   33344444332211      122345788999999985554


Q ss_pred             Eec--CC---cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEE--eCCcceeeeeec
Q 006909          368 GSI--TG---TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRIL--DGVDVIHKFKGL  439 (626)
Q Consensus       368 g~~--dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~~~~~l~~~s~dg~i~iw--d~~~~~~~~~~~  439 (626)
                      .-.  +.   .+.++|..++...........   .--..-..+.|. +++..++.....+|.-+||  +....... ...
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~---~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT  276 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSD---GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLT  276 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESS---SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCC---cceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccc
Confidence            333  22   466777776555433211111   111222355554 7776778788888865555  44433322 222


Q ss_pred             CCCCCeE-EEEEcCCCCEEE-EEeCC----ccEEEEECC-CCCCCCCCccCCccceeeeccCCcEEEEecC
Q 006909          440 PKSGSQM-SASFTTTGKHII-SIGDD----CRVYVWNYD-ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  503 (626)
Q Consensus       440 ~~~~~v~-~~~~sp~g~~l~-s~s~d----g~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s  503 (626)
                      ...-.|. -+.++++++.|+ ++..+    ..|+.-++. ++................|+|+|..++..++
T Consensus       277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            2344554 467788877665 45442    366666776 4321111111111123455555555555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.14  E-value=0.00059  Score=75.56  Aligned_cols=197  Identities=10%  Similarity=0.116  Sum_probs=131.7

Q ss_pred             ccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC----CCCe
Q 006909          268 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV----CEKR  342 (626)
Q Consensus       268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~----~~~~  342 (626)
                      ...|.++.|..+. .++.+..+|.|.+-|..+......-.-.+.|.+++|+| ++..++..+..+++.+-+-    -..+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhcc
Confidence            3689999998765 77888888999999888776655445678899999999 9999998888777765432    0000


Q ss_pred             -E----------E---------Eecc---------------------CCCCeEEEEEeeCCCEEEEE-----ecCCcEEE
Q 006909          343 -V----------V---------DWAD---------------------VRDVISAICYIPDGKGFIVG-----SITGTCHF  376 (626)
Q Consensus       343 -~----------~---------~~~~---------------------~~~~i~~i~~sp~g~~l~~g-----~~dg~i~i  376 (626)
                       +          +         .+.+                     ..+.=++|+|--||+++++.     .....|++
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence             0          0         0110                     11123458999999999983     33379999


Q ss_pred             EEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE---eCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEE
Q 006909          377 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT---SEDSKLRILDGVDV---IHKFKGLPKSGSQMSASF  450 (626)
Q Consensus       377 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~---s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~  450 (626)
                      ||-. +.+.....       ...+--.+++|-|.| .++++.   ..|+.|.++.-+..   ...+........+..++|
T Consensus       227 ~drE-g~Lns~se-------~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W  297 (1265)
T KOG1920|consen  227 YDRE-GALNSTSE-------PVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW  297 (1265)
T ss_pred             eccc-chhhcccC-------cccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence            9987 33221111       111345679999988 567665   34567999984322   222222324445899999


Q ss_pred             cCCCCEEEE---EeCCccEEEEECCCC
Q 006909          451 TTTGKHIIS---IGDDCRVYVWNYDEL  474 (626)
Q Consensus       451 sp~g~~l~s---~s~dg~I~iwd~~~~  474 (626)
                      +.++..|++   ......|++|-+.+-
T Consensus       298 ns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  298 NSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cCCCCceeeeecccccceEEEEEecCe
Confidence            999999988   445556999998764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.13  E-value=0.0013  Score=68.53  Aligned_cols=179  Identities=9%  Similarity=0.043  Sum_probs=108.6

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCC--------eEEEEEee-CCCCEEEEEeCCCcEEEEeCCCCeEEEeccC
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGVCEKRVVDWADV  349 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~~p-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  349 (626)
                      ++.++.++.++.+...|..+|+.+..+....+        ...+.-+| ..+..++.++.+|.+..+|..+++.+-....
T Consensus       205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~  284 (394)
T PRK11138        205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY  284 (394)
T ss_pred             CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence            35677788889999999998887665532111        01111111 1345677778899999999998876532222


Q ss_pred             CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909          350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       350 ~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~  429 (626)
                      .. ...+  ...+..+++++.+|.+..+|..+++..........      ....+.... +  .++++++.+|.|.++|.
T Consensus       285 ~~-~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~------~~~~sp~v~-~--g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        285 GS-VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH------RLLTAPVLY-N--GYLVVGDSEGYLHWINR  352 (394)
T ss_pred             CC-ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCC------CcccCCEEE-C--CEEEEEeCCCEEEEEEC
Confidence            11 1112  23566888889999999999988765432111111      112222222 3  37888999999999998


Q ss_pred             CcceeeeeecCCCCCeE-EEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          430 VDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       430 ~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      .+.....+.......+. ...+  .+..|+.++.||.|+.++.
T Consensus       353 ~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        353 EDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            76554443321222222 1222  2557888899999998875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.10  E-value=0.0014  Score=62.98  Aligned_cols=181  Identities=16%  Similarity=0.078  Sum_probs=110.8

Q ss_pred             CCcEEEeccCCCeeeEeecCCCCeEEEE--EeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEE
Q 006909          288 DKTVRMWQVGCNQCLNVFDHHNYVTCVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF  365 (626)
Q Consensus       288 d~~v~iwd~~~~~~~~~~~~~~~v~~~~--~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l  365 (626)
                      +|+|..||..+|+.+.............  ..+ ++..+++++.++.|..||..+++.+-.......+...- ...+..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence            6889999999999998886422122222  222 56778888899999999999988765444333322222 3356677


Q ss_pred             EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCC-
Q 006909          366 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS-  444 (626)
Q Consensus       366 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-  444 (626)
                      ++++.++.++.+|..+++........... ...........+.  + ..++++..++.|..+|..+............. 
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSP-PAGVRSSSSPAVD--G-DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSC-TCSTB--SEEEEE--T-TEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccceeeeEecccCCcceeeeecccccc-ccccccccCceEe--c-CEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            88888899999998888875542221110 0001112223333  3 47888888999999998866554444222211 


Q ss_pred             ---------eEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          445 ---------QMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       445 ---------v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                               +..-....++ .++.++.++.+..+|+.++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~  194 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE  194 (238)
T ss_dssp             S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE
T ss_pred             CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC
Confidence                     1122222344 77777777764444998874

...

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.07  E-value=2.8e-06  Score=86.89  Aligned_cols=203  Identities=15%  Similarity=0.198  Sum_probs=134.4

Q ss_pred             cCcEEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          181 KGCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       181 ~~~V~~l~fspdg--~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      ...+.|++.+-+.  ..++.|..+|.|-+-.+....-                                           
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------------------------------------   92 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------------------------------------   92 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------------------------------------
Confidence            3457777766543  4888999999998887765211                                           


Q ss_pred             CCceeeccCccceEEEEEcCC--CeEEEE----eCCCcEEEeccCCC--eeeEe--e--cCCCCeEEEEEeeCCCCEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNS--NYLLSC----SMDKTVRMWQVGCN--QCLNV--F--DHHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~--~~l~s~----s~d~~v~iwd~~~~--~~~~~--~--~~~~~v~~~~~~p~~~~~l~s  326 (626)
                      .......+|....++++|++-  +.|++|    -.|..+.|||+.++  .+...  |  .......+++|.. +.+++++
T Consensus        93 Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvla  171 (783)
T KOG1008|consen   93 SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLA  171 (783)
T ss_pred             ccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhc
Confidence            112344578889999999974  366665    23567999999876  22211  1  1234566888886 8899999


Q ss_pred             EeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEE-cCCCceeeeEEeeccccccCCCCeEE
Q 006909          327 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYK-ASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      |.....+.++|++........-....+..+.+.| .+.+++.-. ||.|.+|| ..+-+.++..+. +. .......+..
T Consensus       172 Gm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~-~~-~N~~~~~l~~  248 (783)
T KOG1008|consen  172 GMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL-RN-ENKKPKQLFA  248 (783)
T ss_pred             ccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHh-hC-CCCcccceee
Confidence            9999999999998543322222233566778888 777777665 99999999 433333222211 11 1112346899


Q ss_pred             EEEcCCCCcEEEEEeCC-CcEEEEeCC
Q 006909          405 IQFSRDESQRIMITSED-SKLRILDGV  430 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~d-g~i~iwd~~  430 (626)
                      ++|+|.....+++...| ++|+++|+.
T Consensus       249 ~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  249 LAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             EEeccCCcchhhhhccCcceEEEeccc
Confidence            99999765577777665 789999854

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.07  E-value=0.00078  Score=70.05  Aligned_cols=224  Identities=16%  Similarity=0.165  Sum_probs=121.6

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      ...-....+.++|+|++++.++ ||.-.|+.....                                             
T Consensus        30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~---------------------------------------------   63 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAW---------------------------------------------   63 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTT---------------------------------------------
T ss_pred             CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCC---------------------------------------------
Confidence            3444578999999999999854 777888873321                                             


Q ss_pred             CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                         +.  ...+.-...+|.+.+.+++-...++|.|+.--+......+..+..+..+-.    |..|+..+. +.|.+||+
T Consensus        64 ---r~--k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw  133 (443)
T PF04053_consen   64 ---RN--KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDW  133 (443)
T ss_dssp             ---EE--EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-T
T ss_pred             ---cc--cccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEh
Confidence               11  123455678899888888888889999963223333344444434444432    666666654 48999999


Q ss_pred             CCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC----------ceeeeEEeeccccccCCCCeEEEEEc
Q 006909          339 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN----------DLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       339 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      .+++++....... |..+.|+++|.+++..+.+ .+.+++....          +.....+.-.      ...|.+.+|.
T Consensus       134 ~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~------~~~IkSg~W~  205 (443)
T PF04053_consen  134 ETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI------SERIKSGCWV  205 (443)
T ss_dssp             TT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEE
T ss_pred             hHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe------cceeEEEEEE
Confidence            9999988777664 8999999999999998755 6777665433          0011111110      1578888898


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      .+  -++.+...  .|+.+=..+ ..++..  -..++.-+.+.|..+.+.....|+.|..+.++.
T Consensus       206 ~d--~fiYtT~~--~lkYl~~Ge-~~~i~~--ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  206 ED--CFIYTTSN--HLKYLVNGE-TGIIAH--LDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             TT--EEEEE-TT--EEEEEETTE-EEEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             cC--EEEEEcCC--eEEEEEcCC-cceEEE--cCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            76  34444443  666643222 222222  234566667777778888888888888888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.06  E-value=0.0053  Score=56.72  Aligned_cols=105  Identities=10%  Similarity=-0.002  Sum_probs=81.4

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCe-EEEEEe
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI-SAICYI  359 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i-~~i~~s  359 (626)
                      +++.|+..+.+.--|..+|......-....+.+-+.-  -+++++.|...|.+++.+..+|...-....-+.| ......
T Consensus        25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d  102 (354)
T KOG4649|consen   25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD  102 (354)
T ss_pred             EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence            7888899999999999999888776666666665555  4788999999999999999998544333222222 234457


Q ss_pred             eCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909          360 PDGKGFIVGSITGTCHFYKASGNDLKLE  387 (626)
Q Consensus       360 p~g~~l~~g~~dg~i~i~d~~~~~~~~~  387 (626)
                      +++..+..|+.|++.+..|.++.....+
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEEe
Confidence            8999999999999999999988776554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.04  E-value=0.00033  Score=72.12  Aligned_cols=92  Identities=11%  Similarity=0.136  Sum_probs=71.1

Q ss_pred             EEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC
Q 006909          375 HFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT  453 (626)
Q Consensus       375 ~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~  453 (626)
                      .+|+...++.... .....     ....+.+.+++|+. ..++.|+.||.|.+||..........  ..-.++.++|+|+
T Consensus       239 ciYE~~r~klqrvsvtsip-----L~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~~~k--a~~~P~~iaWHp~  310 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIP-----LPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTLLAK--AEFIPTLIAWHPD  310 (545)
T ss_pred             EEEEeecCceeEEEEEEEe-----cCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeeeeee--ecccceEEEEcCC
Confidence            4677665544322 12222     23789999999997 79999999999999998766555543  3456788999999


Q ss_pred             CCEEEEEeCCccEEEEECCCC
Q 006909          454 GKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       454 g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |..+++|+..|.+.+||+.-.
T Consensus       311 gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  311 GAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CcEEEEEcCCceEEEEEeecC
Confidence            999999999999999998754

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.00  E-value=0.0025  Score=65.46  Aligned_cols=262  Identities=16%  Similarity=0.174  Sum_probs=123.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCccee-eeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc---cccC
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-KSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF---QIEE  258 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  258 (626)
                      .|+.|.|+++..-||.|...|.|.||.+...+... ....+....      ..-++.........+.+.++.-   .-..
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~di~~r~~~~~~~gf   76 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDY------NFRRFSLNNSPGKLTDISDRAPPSLKEGF   76 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------------S--GGGSS-SEEE-GGG--TT-SEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCc------ccccccccCCCcceEEehhhCCccccccc
Confidence            58999999999999999999999999886532211 000000000      0000000000111111111000   0012


Q ss_pred             CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec---------CCCCeEEEEEee----CCC---C
Q 006909          259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNP----IDD---N  322 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~~p----~~~---~  322 (626)
                      .|...+....++|++++.|.=|+++.|..+|.+.|.|++....+..-.         ....|+++.|..    .++   -
T Consensus        77 ~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   77 LPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             CchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            344555666899999999988999999999999999999887776532         234688888863    111   2


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC--cEEEEEcCCCceeeeEEe-eccccccCC
Q 006909          323 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVD-FHDRKKTSG  399 (626)
Q Consensus       323 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~-~~~~~~~~~  399 (626)
                      .+++|...|.+.+|.+.-     .......+..+...       ....+.  .|..++..++........ +.+.  ..+
T Consensus       157 ~L~vGTn~G~v~~fkIlp-----~~~g~f~v~~~~~~-------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l--~~g  222 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILP-----SSNGRFSVQFAGAT-------TNHDSPILSIIPINADTGESALATISAMQGL--SKG  222 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE------GGG-EEEEEEEEE---------SS----EEEEEETTT--B-B-BHHHHHGG--GGT
T ss_pred             EEEEEeCCCCEEEEEEec-----CCCCceEEEEeecc-------ccCCCceEEEEEEECCCCCcccCchhHhhcc--ccC
Confidence            567777778887776520     00000001111000       011111  222333333332211100 0000  000


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEc-----CCCCEEEEEeCCccEEEEECCCC
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT-----TTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----p~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ..+          .-+++...+..++++...+.....+..........+++-     ..+..|++-..+|.|+++.+...
T Consensus       223 ~~i----------~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  223 ISI----------PGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             --------------EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred             CCc----------CcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence            111          124444557889999876554444433122223334442     35677888889999999999986

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.99  E-value=0.00051  Score=72.87  Aligned_cols=69  Identities=13%  Similarity=0.222  Sum_probs=58.4

Q ss_pred             ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909          270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  339 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~  339 (626)
                      .+++++|+|.. .|+.|-.-|.+.+|...+.+..... .|+.+|..+.|+| +|+.++++..-|.|.+|...
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence            35569999988 7788888899999998766554443 4999999999999 99999999999999999764

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.97  E-value=0.0015  Score=69.17  Aligned_cols=132  Identities=17%  Similarity=0.050  Sum_probs=81.7

Q ss_pred             CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      .+.+.+.|..+.++............+.++|+|+++++.+.+    .++...+......   ...+.-      ..  .-
T Consensus       214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~---~vvfni------~~--ie  282 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW---VVVFNI------AR--IE  282 (635)
T ss_pred             eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCce---EEEEch------HH--HH
Confidence            355777787776666555555566778899999999888632    2333333222110   000000      00  01


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCC
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELC  475 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~  475 (626)
                      ++.++| ++...  .++.|.+.|..+    ........+-......+.++|||+++++++. +.+|.|.|+.+..
T Consensus       283 a~vkdG-K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        283 EAVKAG-KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             HhhhCC-CEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            344566 34444  367899999876    3233333335667889999999999887765 8999999998853

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.95  E-value=4.9e-06  Score=85.18  Aligned_cols=198  Identities=14%  Similarity=0.200  Sum_probs=130.1

Q ss_pred             ccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCeee-E--eecCCCCeEEEEEeeCCCCEEEEEe----CCCcEEEEe
Q 006909          268 KGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCL-N--VFDHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWG  337 (626)
Q Consensus       268 ~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~~~-~--~~~~~~~v~~~~~~p~~~~~l~s~s----~dg~v~iwd  337 (626)
                      ...+.|+++.-+  . .++.|..+|.|-+-.++...-. .  +-++..++++++|++.|.+.||.|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            456777776533  2 6888899999998877543322 2  2247789999999998788888773    356799999


Q ss_pred             CCCCeE-----EEec-cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          338 VCEKRV-----VDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       338 ~~~~~~-----~~~~-~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      +.++-.     ..+. +......++||..+.+.+++|.....+.++|++........+  .      ...+.++...|-.
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--n------Tk~vqG~tVdp~~  207 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--N------TKYVQGITVDPFS  207 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--h------hhhcccceecCCC
Confidence            987621     1122 234456689999889999999999999999998432211111  1      1356667777733


Q ss_pred             CcEEEEEeCCCcEEEEeC-CcceeeeeecCCC-----CCeEEEEEcCCCC-EEEEEe-CCccEEEEECCCC
Q 006909          412 SQRIMITSEDSKLRILDG-VDVIHKFKGLPKS-----GSQMSASFTTTGK-HIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       412 ~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~~~-----~~v~~~~~sp~g~-~l~s~s-~dg~I~iwd~~~~  474 (626)
                      +.++++.. ||.|.+||. .+....+....+.     ..+..++|.|... .+++.+ +.++|+.+++...
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence            35665555 999999993 3322222221122     2488999998643 344444 4589999998754

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.92  E-value=0.0059  Score=58.20  Aligned_cols=205  Identities=13%  Similarity=0.218  Sum_probs=117.5

Q ss_pred             eeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          262 QELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      +.+.+-...+..|+|.|+ + +++.....+.|...+.. |+.++.+.  .....-.|++.. ++.++++--.++.+.+++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence            445566667999999996 4 55566667778777864 77887775  345678888875 665666555688899988


Q ss_pred             CCCC--e--E---EE----ec-cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC--CceeeeEEeecc--ccccCCCC
Q 006909          338 VCEK--R--V---VD----WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHD--RKKTSGNK  401 (626)
Q Consensus       338 ~~~~--~--~---~~----~~-~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~--~~~~~~~~~~~~--~~~~~~~~  401 (626)
                      +...  .  .   ..    .. .....+-.++|+|.++.|+++-...-..+|.+..  ............  ........
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            7321  1  1   11    11 2345689999999988888888887778888765  211111111111  01223356


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecC-------CCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDCRVYVW  469 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~s~s~dg~I~iw  469 (626)
                      +.+++++|....+++.+..+..|..+|.. +.+..+....       .-...-.++|.++|++.+ .++-+..++|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence            88999999876788888888999999955 3333333321       113567899999996555 4566666665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.00019  Score=69.93  Aligned_cols=214  Identities=9%  Similarity=-0.028  Sum_probs=117.4

Q ss_pred             eccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 006909          346 WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL  424 (626)
Q Consensus       346 ~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i  424 (626)
                      ...+...|..++|+|..+ ++..++.+..|.|.|+.+...... ...       ...+.+++|.-+...+|.+|...|.|
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-y~a-------~~~~wSC~wDlde~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-YIA-------YNQIWSCCWDLDERHVIYAGLQNGMV  260 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-eec-------cCCceeeeeccCCcceeEEeccCceE
Confidence            445667799999999877 677899999999999998765332 111       16899999999988899999999999


Q ss_pred             EEEeCCcceeee---eecCCCCCeEEEE------EcCCCCEEEEEeCCccEEEEECCCC--CCCCCCccCCccceeeec-
Q 006909          425 RILDGVDVIHKF---KGLPKSGSQMSAS------FTTTGKHIISIGDDCRVYVWNYDEL--CFPSSKQKNSVRSCEHFF-  492 (626)
Q Consensus       425 ~iwd~~~~~~~~---~~~~~~~~v~~~~------~sp~g~~l~s~s~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~-  492 (626)
                      .|||++.....+   ...-...+|..++      ..+.|.+++..+.+  +..|++...  ..+........-.|+.+. 
T Consensus       261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy  338 (463)
T KOG1645|consen  261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQY  338 (463)
T ss_pred             EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeee
Confidence            999987543222   2211233444333      23445566655543  556665432  223222333333343333 


Q ss_pred             -cCCcEEEEecCCCCcccc---cc-cCCCccccCccccccCCCCcccCCCcc-cCCccccCCCCcccccCCCCCCCCCCC
Q 006909          493 -SEGVSVAVQWPGIGTEQK---SL-CSSSLRDCSQKWDNLETAPWIRDSERF-SLGSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       493 -~~g~~~av~~s~~~~~l~---~~-~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                       +-...+.+.+.|+...-.   .+ ..+..++ .++|..-...-........ -..+.-.+|..+++......+.+.+||
T Consensus       339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D  417 (463)
T KOG1645|consen  339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD  417 (463)
T ss_pred             cCccceEEEEecCCCCCccceeeeeeeccccC-ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence             333455555555322111   00 1111111 2222221111000000001 112223566666665444457899999


Q ss_pred             cccC
Q 006909          567 VTID  570 (626)
Q Consensus       567 ~~~~  570 (626)
                      ..+.
T Consensus       418 ~~s~  421 (463)
T KOG1645|consen  418 PHSF  421 (463)
T ss_pred             cchh
Confidence            9887

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.87  E-value=0.00071  Score=70.10  Aligned_cols=193  Identities=16%  Similarity=0.208  Sum_probs=119.8

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEE---EeCC-CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCCCc--
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLS---CSMD-KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGK--  332 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s---~s~d-~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~--  332 (626)
                      ...+..-...+..-+|+|++ .++.   -... ..+.++|+.+++..........-..-+|+| +++.|+.. ..||.  
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~  263 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPD  263 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCcc
Confidence            33444445567777888887 2221   1222 459999999988777776666667779999 87776554 45554  


Q ss_pred             EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          333 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      |.++|+.++....+....+.-..-.|+|||++++..+. .|  .|.+++..+...  ..+....      ..-..-.|+|
T Consensus       264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~------~~~~~p~~Sp  335 (425)
T COG0823         264 IYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSG------GGNSNPVWSP  335 (425)
T ss_pred             EEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccC------CCCcCccCCC
Confidence            67778888886666655555567889999999887654 34  456666665554  2333332      1222678999


Q ss_pred             CCCcEEEEEeCCCc--EEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          410 DESQRIMITSEDSK--LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       410 ~~~~~l~~~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                      ||..+++....+|.  |.+.|..+... .............+|.|+|+.++..+..
T Consensus       336 dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         336 DGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence            99544444544455  55555443322 2222234444566788888887766543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.005  Score=64.70  Aligned_cols=116  Identities=16%  Similarity=0.179  Sum_probs=86.3

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      |...|.--+++..++|++.|+.-|.+.+|+-..+...                                           
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-------------------------------------------   68 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-------------------------------------------   68 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhh-------------------------------------------
Confidence            5566777788888999999999999999987763221                                           


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe-----e--cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-----F--DHHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~-----~--~~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                       .....+-.+.+..+..+++. ++++|+..|.|.++.+..+..-..     .  .|...|+|++|++ ++..+++|...|
T Consensus        69 -~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~G  146 (726)
T KOG3621|consen   69 -KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQG  146 (726)
T ss_pred             -cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCc
Confidence             11222334556666777766 677788888999998865433211     1  2788999999999 999999999999


Q ss_pred             cEEEEeCCC
Q 006909          332 KVRIWGVCE  340 (626)
Q Consensus       332 ~v~iwd~~~  340 (626)
                      +|.+-.+..
T Consensus       147 kv~~~~L~s  155 (726)
T KOG3621|consen  147 KVVLTELDS  155 (726)
T ss_pred             eEEEEEech
Confidence            998887765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.80  E-value=0.0066  Score=61.35  Aligned_cols=171  Identities=13%  Similarity=0.122  Sum_probs=103.1

Q ss_pred             CcEEEeccCCC-----ee--eEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe-EEEeccCCCCeEEEEEee
Q 006909          289 KTVRMWQVGCN-----QC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIP  360 (626)
Q Consensus       289 ~~v~iwd~~~~-----~~--~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp  360 (626)
                      |.|.++++...     +.  +......++|++++-.  ++. |+.+. ++.|.+|++...+ +.........+...+...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            88999999874     22  2233478899998876  444 44443 5899999998877 666544444444445555


Q ss_pred             CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc---------
Q 006909          361 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---------  431 (626)
Q Consensus       361 ~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~---------  431 (626)
                      .++++++|.....+.++..+........+.-.    .....++++.|-+++ ..++++..+|.+.++....         
T Consensus       138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d----~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~  212 (321)
T PF03178_consen  138 FKNYILVGDAMKSVSLLRYDEENNKLILVARD----YQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGD  212 (321)
T ss_dssp             ETTEEEEEESSSSEEEEEEETTTE-EEEEEEE----SS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTT
T ss_pred             cccEEEEEEcccCEEEEEEEccCCEEEEEEec----CCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCccccccc
Confidence            57799999999999988665433222222111    113568999998776 5999999999999987431         


Q ss_pred             -ceeeeeecCCCCCeEEE---EEcC--CCC------EEEEEeCCccEEE
Q 006909          432 -VIHKFKGLPKSGSQMSA---SFTT--TGK------HIISIGDDCRVYV  468 (626)
Q Consensus       432 -~~~~~~~~~~~~~v~~~---~~sp--~g~------~l~s~s~dg~I~i  468 (626)
                       .............|+++   ++.|  .+.      .++.++.+|.|.+
T Consensus       213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence             11112222234556666   4444  122      3667777887773

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.77  E-value=0.004  Score=66.01  Aligned_cols=184  Identities=13%  Similarity=0.051  Sum_probs=116.4

Q ss_pred             cCCCe-E-EEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC----CcEEEEeCCCCeEEEeccCC
Q 006909          277 SNSNY-L-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID----GKVRIWGVCEKRVVDWADVR  350 (626)
Q Consensus       277 s~~~~-l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~  350 (626)
                      .|+|. + .+.-..+.+.+.|.++.+....+.-......++++| ++.++++.+.+    .++..-+.............
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            34552 2 234455778888998888877776666667889999 99988887632    22333333221111111111


Q ss_pred             CCeEEEEEeeCCCEEEEEecCCcEEEEEcCC----CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909          351 DVISAICYIPDGKGFIVGSITGTCHFYKASG----NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  426 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i  426 (626)
                      . +  -.+.++|++..+  .++.|.+.|..+    .......+..       +.....+.++|||...++++..+++|.|
T Consensus       280 ~-i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-------GKsPHGV~vSPDGkylyVanklS~tVSV  347 (635)
T PRK02888        280 R-I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-------PKNPHGVNTSPDGKYFIANGKLSPTVTV  347 (635)
T ss_pred             H-H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-------CCCccceEECCCCCEEEEeCCCCCcEEE
Confidence            0 0  023457887776  367899999887    2222222222       2567889999999666666777999999


Q ss_pred             EeCCcceeee----------ee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          427 LDGVDVIHKF----------KG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       427 wd~~~~~~~~----------~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      +|+.+....+          .. ..-.......+|+++|+...|---|..|..||+..
T Consensus       348 IDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            9987544211          11 11123445678999999888888899999999986

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.73  E-value=0.00063  Score=72.23  Aligned_cols=69  Identities=22%  Similarity=0.389  Sum_probs=57.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909          184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  263 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (626)
                      +++++|+|..-.||.|-.-|.+.+|...+.                                             +.-..
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~---------------------------------------------e~htv   96 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---------------------------------------------ETHTV   96 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCc---------------------------------------------eeeee
Confidence            567999999889999999999999987652                                             11223


Q ss_pred             eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC
Q 006909          264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG  297 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~  297 (626)
                      ...|+.+|..+.||++| .++++..-|.|.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            34699999999999998 89999999999999765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.71  E-value=0.0029  Score=64.76  Aligned_cols=83  Identities=12%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCC----------------
Q 006909          287 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR----------------  350 (626)
Q Consensus       287 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----------------  350 (626)
                      ..+.+.|+|+.+++..........+....|+| +++.++... ++.|.+++..++....+....                
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred             cceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence            34678999999987766655567888999999 999998886 578999998877665533221                


Q ss_pred             --CCeEEEEEeeCCCEEEEEecC
Q 006909          351 --DVISAICYIPDGKGFIVGSIT  371 (626)
Q Consensus       351 --~~i~~i~~sp~g~~l~~g~~d  371 (626)
                        +.-.++-|+|||++|+....|
T Consensus        99 v~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             TSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccccccceEECCCCCEEEEEEEC
Confidence              223578899999999886543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.0031  Score=67.56  Aligned_cols=158  Identities=9%  Similarity=0.111  Sum_probs=105.4

Q ss_pred             EeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCC-eEEEEEeeCCCEEEEEecCC-----cEEEEEcCCCcee----
Q 006909          316 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLK----  385 (626)
Q Consensus       316 ~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-i~~i~~sp~g~~l~~g~~dg-----~i~i~d~~~~~~~----  385 (626)
                      |++ .+..++.|+.+|.|.+.+-.-.....+..+... |..+....+..+|++.+.|+     .+++|++...+..    
T Consensus        31 ~~s-~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   31 CSS-STGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             EcC-CCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            455 788999999999998887654444555555555 44444433446777766654     5899998643211    


Q ss_pred             -eeEEeecc-ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC----cceeeeeecCCCCCeEEEEEcCCCCEEEE
Q 006909          386 -LEKVDFHD-RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIIS  459 (626)
Q Consensus       386 -~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  459 (626)
                       ........ ..+....++++++.+.+- ..+++|-.+|.|..+...    ...+.-..+....+|+++.+..+++.++-
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence             10111112 233456789999999985 799999999999999743    22233333556789999999988887433


Q ss_pred             EeCCccEEEEECCCCC
Q 006909          460 IGDDCRVYVWNYDELC  475 (626)
Q Consensus       460 ~s~dg~I~iwd~~~~~  475 (626)
                      +..-..|.+|.+.+..
T Consensus       189 v~Tt~~V~~y~l~gr~  204 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRT  204 (933)
T ss_pred             EEecceeEEEEecCCC
Confidence            3345679999998543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.68  E-value=0.00045  Score=72.19  Aligned_cols=162  Identities=10%  Similarity=0.135  Sum_probs=109.0

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc--CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909          307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  384 (626)
Q Consensus       307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~  384 (626)
                      ++..|.--++.. ++.+++.|+.-|.+++|+-.++.......  ..+.+..++++++..++|.|+..|.|.++-+... .
T Consensus        32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-L  109 (726)
T ss_pred             CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-C
Confidence            344444444454 78999999999999999988877665444  5667778889999999999999999999998873 3


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-cee---eeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909          385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIH---KFKGLPKSGSQMSASFTTTGKHIISI  460 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~~~---~~~~~~~~~~v~~~~~sp~g~~l~s~  460 (626)
                      +............|...|++++|++++ ..+++|...|+|..-.+.. ...   ..........|..+... ++.+|++.
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVSt  187 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVST  187 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhh
Confidence            333333333334477999999999998 7999999999998877654 111   11112234566666653 33344433


Q ss_pred             eCCccEEEEECCCC
Q 006909          461 GDDCRVYVWNYDEL  474 (626)
Q Consensus       461 s~dg~I~iwd~~~~  474 (626)
                      . - .-.+++.+..
T Consensus       188 l-~-r~~Lc~tE~e  199 (726)
T KOG3621|consen  188 L-T-RCILCQTEAE  199 (726)
T ss_pred             h-h-hhheeecchh
Confidence            2 2 2334455443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.67  E-value=0.03  Score=56.58  Aligned_cols=173  Identities=17%  Similarity=0.324  Sum_probs=112.7

Q ss_pred             CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCC------CCEEEEEeC----------CCcEEEEeCCCC-----eE--
Q 006909          289 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID------DNYFISGSI----------DGKVRIWGVCEK-----RV--  343 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~------~~~l~s~s~----------dg~v~iwd~~~~-----~~--  343 (626)
                      ..|++.|..+.+.+..+.  ....+.+++.....      ..+|+.|+.          .|.|.++++...     ++  
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            358888888888777664  44556655543312      467777653          288999999884     32  


Q ss_pred             EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc-eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909          344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  422 (626)
Q Consensus       344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg  422 (626)
                      +......++|++++-- ++ +|+++ .++.|.+|++...+ .... .....     ...++++....+   ++++|....
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~-~~~~~-----~~~i~sl~~~~~---~I~vgD~~~  149 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKK-AFYDS-----PFYITSLSVFKN---YILVGDAMK  149 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEE-EEE-B-----SSSEEEEEEETT---EEEEEESSS
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhh-heecc-----eEEEEEEecccc---EEEEEEccc
Confidence            3345668889998865 44 44444 45899999999887 3222 22222     146777776643   889998888


Q ss_pred             cEEEE--eCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          423 KLRIL--DGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       423 ~i~iw--d~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      .+.++  +.... ...+........++++.|-++++.++.+..+|.|.++..+.
T Consensus       150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            88877  43222 33333333456788898987778999999999999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.63  E-value=0.0013  Score=72.15  Aligned_cols=148  Identities=18%  Similarity=0.180  Sum_probs=99.2

Q ss_pred             CCCEEEEE-eCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC-------CCEEEEEecCCcEEEEEcCCCceeeeEEee
Q 006909          320 DDNYFISG-SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD-------GKGFIVGSITGTCHFYKASGNDLKLEKVDF  391 (626)
Q Consensus       320 ~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~-------g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  391 (626)
                      +.++|+.- .....|+-.|+..|+++..-.....+.-..+.|+       ....++|-.+..+..||.+-.....  ...
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~--v~~  569 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL--VDS  569 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce--eec
Confidence            33444433 3457899999999998874443333333445554       3356778889999999998644211  111


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          392 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      ..+........+|++-+.+|  +||+|+.+|.||+||-......-...+-..+|..+..+.||++|++.+ +..|.+++.
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            22222345678899999887  899999999999999332222222233578999999999999998776 567777775


Q ss_pred             C
Q 006909          472 D  472 (626)
Q Consensus       472 ~  472 (626)
                      .
T Consensus       647 ~  647 (794)
T PF08553_consen  647 L  647 (794)
T ss_pred             e
Confidence            3

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.58  E-value=0.046  Score=56.93  Aligned_cols=173  Identities=14%  Similarity=0.200  Sum_probs=94.3

Q ss_pred             cEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc---CCCC-----eEEEEEee
Q 006909          290 TVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---VRDV-----ISAICYIP  360 (626)
Q Consensus       290 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~-----i~~i~~sp  360 (626)
                      .|.||+.. |+.+..+. ..+.+.++.|+.  ...|+....||.+++||+.+.. ....+   ....     +.+..+..
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence            48999886 55555553 337899999986  4556677789999999997554 11111   1111     22223333


Q ss_pred             CCCEEEEEecCCcEEEEEcCCCceeeeEE-eeccccc--cCCCCeEE-EEEcCCCCcEEEEEeCCCcEEEEeCCcceeee
Q 006909          361 DGKGFIVGSITGTCHFYKASGNDLKLEKV-DFHDRKK--TSGNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKF  436 (626)
Q Consensus       361 ~g~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~~~~~~--~~~~~i~~-l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~  436 (626)
                      +|  +++-+.++.+.+..--......... .......  ........ ..++.+. ...+....++.+.+.+.... .. 
T Consensus       138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~-~~-  212 (410)
T PF04841_consen  138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSF-KQ-  212 (410)
T ss_pred             CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccc-cc-
Confidence            44  4444555555444322211111111 0110000  00011111 2344443 34455555666765553322 11 


Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          437 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       437 ~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                        ....+++..++.||+|++||.-..+|.+.|.+.+-
T Consensus       213 --i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  213 --IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             --ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence              12346899999999999999999999999887543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.58  E-value=0.08  Score=52.15  Aligned_cols=198  Identities=13%  Similarity=0.127  Sum_probs=113.9

Q ss_pred             EEEcCCC-eEE--EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC-CCeEEE----
Q 006909          274 LAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVD----  345 (626)
Q Consensus       274 l~~s~~~-~l~--s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~-~~~~~~----  345 (626)
                      ++++.++ +++  -.+--..|.|-|+..++.+..+...+   |...-|..+.-|.+.+.||++.-..+. .|+...    
T Consensus       100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~  176 (342)
T PF06433_consen  100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK  176 (342)
T ss_dssp             EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred             eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence            4556666 322  23445578888999888888887665   333334344668888899999888776 344322    


Q ss_pred             -eccCCCC-eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccc----cCCCCeEEEEEcCCCCcEEEEE
Q 006909          346 -WADVRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKK----TSGNKITGIQFSRDESQRIMIT  418 (626)
Q Consensus       346 -~~~~~~~-i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~----~~~~~i~~l~~s~~~~~~l~~~  418 (626)
                       +....++ +..-.+...+..++--+.+|.|+-.|+........ .+.......    =..+...-+++++....+++.-
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence             1112222 22334555566677788999999999988764433 332211000    0113344567776543333322


Q ss_pred             eC-------C--CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-EEEEEe-CCccEEEEECCCCC
Q 006909          419 SE-------D--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNYDELC  475 (626)
Q Consensus       419 s~-------d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s-~dg~I~iwd~~~~~  475 (626)
                      ..       |  ..|.++|+.+.....+.. -..++.++..+.+.+ +|++.+ .++.|.+||..++.
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            11       1  257778877655544442 134577899988775 665544 57899999999873

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.57  E-value=0.005  Score=49.75  Aligned_cols=101  Identities=24%  Similarity=0.284  Sum_probs=72.3

Q ss_pred             EEEEEEcC---CC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          184 IWTLKFSP---DG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       184 V~~l~fsp---dg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      |++|++..   || +.|+.|+.|..||||+=..                                               
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------------------------------   34 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------------------------------   34 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------------------------
Confidence            67777654   33 4899999999999998553                                               


Q ss_pred             CceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCC---CEEEEEeCCCcEE
Q 006909          260 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD---NYFISGSIDGKVR  334 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~s~s~dg~v~  334 (626)
                      .+.++. -++.|++++-...+.++.+-.+|+|-+|+-  ...+...+....+.++++...++   ..|++|-.+|.|-
T Consensus        35 ~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   35 IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            122322 456788888887789999999999999976  33344445555688887765232   3688888888774

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.03  Score=57.92  Aligned_cols=200  Identities=15%  Similarity=0.146  Sum_probs=136.7

Q ss_pred             eEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC---CCcEEEEeCCCCeEEE
Q 006909          271 VLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---DGKVRIWGVCEKRVVD  345 (626)
Q Consensus       271 V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---dg~v~iwd~~~~~~~~  345 (626)
                      -..++.++.+  .+++...++.|.+.|..+...............++++| +++.+..+..   ++++.+.|..+..+..
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            3456677665  45555567899999988888888776555778999999 7766665554   6889999998888776


Q ss_pred             eccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC--C
Q 006909          346 WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--S  422 (626)
Q Consensus       346 ~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d--g  422 (626)
                      .......-..++++|+|+.+++.. .++.+.+.|..+.....   ...............+.++|+|.+..++...+  +
T Consensus       155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~  231 (381)
T COG3391         155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN  231 (381)
T ss_pred             EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---cccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence            644433338999999999777665 78899999977655431   00000111224567789999985444444443  5


Q ss_pred             cEEEEeCCcceeeeeecCCCC-CeEEEEEcCCCCEEEEEeCC-ccEEEEECCCC
Q 006909          423 KLRILDGVDVIHKFKGLPKSG-SQMSASFTTTGKHIISIGDD-CRVYVWNYDEL  474 (626)
Q Consensus       423 ~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~s~s~d-g~I~iwd~~~~  474 (626)
                      .+...|............-.. ....+.++|+|+++.+.... +.+.+-|..+.
T Consensus       232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            888888775443333111112 56678899999999888544 78888888765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.55  E-value=0.059  Score=54.09  Aligned_cols=195  Identities=11%  Similarity=0.048  Sum_probs=97.1

Q ss_pred             EEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEee-CCCCEEEEEe----------------------
Q 006909          274 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP-IDDNYFISGS----------------------  328 (626)
Q Consensus       274 l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p-~~~~~l~s~s----------------------  328 (626)
                      ..+++++ .++-......|+--|+.+.+....+. ....+-...|.. .++..++-.-                      
T Consensus        86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~  165 (386)
T PF14583_consen   86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR  165 (386)
T ss_dssp             -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred             eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence            3445554 55445455678888888877666555 344554556643 1344433221                      


Q ss_pred             CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC-----cEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          329 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      ....|.-.|+.+++...+......+..+.|+|....+++=+..|     .-|||-++........+..+    .....+.
T Consensus       166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~----~~~e~~g  241 (386)
T PF14583_consen  166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR----MEGESVG  241 (386)
T ss_dssp             --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEE
T ss_pred             CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC----CCCcccc
Confidence            11346666888888887778888889999999665565544443     24778776544433322211    1234556


Q ss_pred             EEEEcCCCCcEEEEEe-C---CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc---------------
Q 006909          404 GIQFSRDESQRIMITS-E---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---------------  464 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s-~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg---------------  464 (626)
                      .=-|.|||..+...+. .   +..|.-+|..+.......  .......+.-++||++++.=+.|.               
T Consensus       242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~  319 (386)
T PF14583_consen  242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEND  319 (386)
T ss_dssp             EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE------------------
T ss_pred             cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCC
Confidence            6678999865555443 2   224555565544322211  111333455578999887644432               


Q ss_pred             -cEEEEECCCC
Q 006909          465 -RVYVWNYDEL  474 (626)
Q Consensus       465 -~I~iwd~~~~  474 (626)
                       -|+++++..+
T Consensus       320 p~i~~~~~~~~  330 (386)
T PF14583_consen  320 PWIYLFDVEAG  330 (386)
T ss_dssp             -EEEEEETTTT
T ss_pred             cEEEEeccccC
Confidence             4666777665

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.51  E-value=0.17  Score=53.18  Aligned_cols=240  Identities=15%  Similarity=0.182  Sum_probs=128.3

Q ss_pred             cEEEEEEcCCCCEEEEE-eCCC----cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          183 CIWTLKFSPDGRYLASG-GEDG----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       183 ~V~~l~fspdg~~Latg-s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .+...++||||++||-+ +..|    .|+++|+.++.....                                       
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d---------------------------------------  165 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD---------------------------------------  165 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE---------------------------------------
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC---------------------------------------
Confidence            44568899999988865 3334    599999988532110                                       


Q ss_pred             CCCceeeccCccceEEEEEcCCC-e-EEEEeC----------CCcEEEeccCCCeee--Eeec--CCCC-eEEEEEeeCC
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-Y-LLSCSM----------DKTVRMWQVGCNQCL--NVFD--HHNY-VTCVQFNPID  320 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~-l~s~s~----------d~~v~iwd~~~~~~~--~~~~--~~~~-v~~~~~~p~~  320 (626)
                           .+..  .....+.|.+++ . +.+...          ...|+.|.+.+...-  ..+.  .... ...+..++ +
T Consensus       166 -----~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d  237 (414)
T PF02897_consen  166 -----GIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-D  237 (414)
T ss_dssp             -----EEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-T
T ss_pred             -----cccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-c
Confidence                 1111  112238999886 3 344322          234788888776443  4443  2223 66788888 8


Q ss_pred             CCEEEEEeCC----CcEEEEeCCCC-----eEEEeccCCCCeEEEEEeeCCCEEEEEe---cCCcEEEEEcCCCceee-e
Q 006909          321 DNYFISGSID----GKVRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKL-E  387 (626)
Q Consensus       321 ~~~l~s~s~d----g~v~iwd~~~~-----~~~~~~~~~~~i~~i~~sp~g~~l~~g~---~dg~i~i~d~~~~~~~~-~  387 (626)
                      +++++..+..    ..+.+.|+..+     ....+......+....-+..+.+++...   ..+.|...++....... .
T Consensus       238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~  317 (414)
T PF02897_consen  238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW  317 (414)
T ss_dssp             SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE
T ss_pred             ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccce
Confidence            8887754432    34788888764     4444444444444433333444444332   23567777777665311 1


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEE-EeC-
Q 006909          388 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIIS-IGD-  462 (626)
Q Consensus       388 ~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg--~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s-~s~-  462 (626)
                      .......   ....+..+....+  .+++....++  .|++++.. ............+.|..+...++++.+.. .+. 
T Consensus       318 ~~l~~~~---~~~~l~~~~~~~~--~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~  392 (414)
T PF02897_consen  318 TVLIPED---EDVSLEDVSLFKD--YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSF  392 (414)
T ss_dssp             EEEE--S---SSEEEEEEEEETT--EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEET
T ss_pred             eEEcCCC---CceeEEEEEEECC--EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCC
Confidence            1111111   0124566665544  4666665554  67888987 43333333334455666665566654433 221 


Q ss_pred             --CccEEEEECCCC
Q 006909          463 --DCRVYVWNYDEL  474 (626)
Q Consensus       463 --dg~I~iwd~~~~  474 (626)
                        -++++.||+.++
T Consensus       393 ~~P~~~y~~d~~t~  406 (414)
T PF02897_consen  393 TTPPTVYRYDLATG  406 (414)
T ss_dssp             TEEEEEEEEETTTT
T ss_pred             CCCCEEEEEECCCC
Confidence              368888998876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.49  E-value=0.046  Score=54.13  Aligned_cols=181  Identities=12%  Similarity=0.124  Sum_probs=102.1

Q ss_pred             EEcCCCeEEEEeCCCcEEEeccCCCeeeEeec------CCCCeEEEEEeeCCCCEEEEEeC-----------CCcEEEEe
Q 006909          275 AWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSI-----------DGKVRIWG  337 (626)
Q Consensus       275 ~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~~~~v~~~~~~p~~~~~l~s~s~-----------dg~v~iwd  337 (626)
                      .....+.|+++...  +.+++.+++..+..+.      .....+.+...| +|.+.++...           -|.|+.+|
T Consensus        73 ~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~  149 (307)
T COG3386          73 LIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVD  149 (307)
T ss_pred             eecCCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEc
Confidence            33445577766543  5667766555533321      224566778888 7777665443           13455555


Q ss_pred             CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       338 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      ...........+-...+.|+||||++.|+..... +.|.-|++........ ..... ......+..-.++...+| .+.
T Consensus       150 p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~-~~~~~~G~PDG~~vDadG-~lw  227 (307)
T COG3386         150 PDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV-DFDEEPGLPDGMAVDADG-NLW  227 (307)
T ss_pred             CCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE-EccCCCCCCCceEEeCCC-CEE
Confidence            4333333344445667889999999988887654 7888887763111111 00000 011123556677788887 455


Q ss_pred             EEEeCCC-cEEEEeCC-cceeeeeecCCCCCeEEEEEc-CCCCEEEEEeC
Q 006909          416 MITSEDS-KLRILDGV-DVIHKFKGLPKSGSQMSASFT-TTGKHIISIGD  462 (626)
Q Consensus       416 ~~~s~dg-~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s-p~g~~l~s~s~  462 (626)
                      +++..+| .|.+|+.. .....+..  ....+++++|- |+.+.|+..+.
T Consensus       228 ~~a~~~g~~v~~~~pdG~l~~~i~l--P~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         228 VAAVWGGGRVVRFNPDGKLLGEIKL--PVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EecccCCceEEEECCCCcEEEEEEC--CCCCCccceEeCCCcCEEEEEec
Confidence            4444443 89999876 33444443  33677778874 55565555443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.43  E-value=0.0078  Score=48.66  Aligned_cols=103  Identities=20%  Similarity=0.347  Sum_probs=73.0

Q ss_pred             eEEEEEeeCCC---CEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909          311 VTCVQFNPIDD---NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  387 (626)
Q Consensus       311 v~~~~~~p~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~  387 (626)
                      |+++++...++   +.|++|+.|..||+|+-  .+++........|++++-... ..++.+..+|+|-+|+-.....   
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW---   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW---   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee---
Confidence            66777765443   68999999999999964  366666677788888887766 5799999999999998643222   


Q ss_pred             EEeeccccccCCCCeEEEEEc---CCCCcEEEEEeCCCcEEE
Q 006909          388 KVDFHDRKKTSGNKITGIQFS---RDESQRIMITSEDSKLRI  426 (626)
Q Consensus       388 ~~~~~~~~~~~~~~i~~l~~s---~~~~~~l~~~s~dg~i~i  426 (626)
                        .....     ..++++++.   .||..-|++|-.+|.|-+
T Consensus        76 --RiKSK-----~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   76 --RIKSK-----NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             --eeccC-----CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence              22221     346666553   455567899988888753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.42  E-value=0.069  Score=57.26  Aligned_cols=181  Identities=12%  Similarity=0.105  Sum_probs=100.9

Q ss_pred             CCCcEEEeccCCCeeeEeecCCC---------------------Ce-EEEEEeeCCCCEEEEEeCCC-------------
Q 006909          287 MDKTVRMWQVGCNQCLNVFDHHN---------------------YV-TCVQFNPIDDNYFISGSIDG-------------  331 (626)
Q Consensus       287 ~d~~v~iwd~~~~~~~~~~~~~~---------------------~v-~~~~~~p~~~~~l~s~s~dg-------------  331 (626)
                      .++.|..+|..+|+.+..+....                     .+ ...++.+ .+..++.++.++             
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~  251 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD  251 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence            46788889999998887764211                     01 1234444 456777777555             


Q ss_pred             -----cEEEEeCCCCeEEEeccCC-C------CeEEEEEe----eCCC---EEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909          332 -----KVRIWGVCEKRVVDWADVR-D------VISAICYI----PDGK---GFIVGSITGTCHFYKASGNDLKLEKVDFH  392 (626)
Q Consensus       332 -----~v~iwd~~~~~~~~~~~~~-~------~i~~i~~s----p~g~---~l~~g~~dg~i~i~d~~~~~~~~~~~~~~  392 (626)
                           .|.-+|..+++.+=..... .      ......+.    -+|.   .+++++.+|.+..+|..+++.........
T Consensus       252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~  331 (488)
T cd00216         252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE  331 (488)
T ss_pred             CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence                 6888899988865322111 0      00111111    1333   57888899999999999988765422110


Q ss_pred             cccccCCCCeEEEEEcCCCCcEEEEE------------------eCCCcEEEEeCCcceeeeeecCCC--------CCeE
Q 006909          393 DRKKTSGNKITGIQFSRDESQRIMIT------------------SEDSKLRILDGVDVIHKFKGLPKS--------GSQM  446 (626)
Q Consensus       393 ~~~~~~~~~i~~l~~s~~~~~~l~~~------------------s~dg~i~iwd~~~~~~~~~~~~~~--------~~v~  446 (626)
                                ..+..+| +  .++.+                  ..+|.+.-.|..+.....+.....        .+..
T Consensus       332 ----------~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~  398 (488)
T cd00216         332 ----------QPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW  398 (488)
T ss_pred             ----------cccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc
Confidence                      1112222 1  12221                  234566666665544443332110        1111


Q ss_pred             EEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909          447 SASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  481 (626)
Q Consensus       447 ~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~  481 (626)
                      .-.....+..|+.++.||.|+.+|..++.......
T Consensus       399 ~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         399 GGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             CcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence            11111246789999999999999999986554443

The alignment model contains an 8-bladed beta-propeller.

>smart00320 WD40 WD40 repeats

Probab=97.39  E-value=0.00026  Score=45.17  Aligned_cols=36  Identities=39%  Similarity=0.939  Sum_probs=32.3

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH  209 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd  209 (626)
                      ...+.+|...|++++|++++.++++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345668999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.39  E-value=0.023  Score=54.24  Aligned_cols=202  Identities=15%  Similarity=0.198  Sum_probs=107.0

Q ss_pred             ccccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      .+.|.+-...+..+.|+|+.+ ++|+....+.|...+.. ++.                                     
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v-------------------------------------   55 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV-------------------------------------   55 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-------------------------------------
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE-------------------------------------
Confidence            345666666799999999866 55555566777666653 221                                     


Q ss_pred             cccccCCCcee--eccCccceEEEEEcCCCeEEEEe-CCCcEEEeccCCCe------eeEeec------CCCCeEEEEEe
Q 006909          253 VFQIEESPLQE--LHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQ------CLNVFD------HHNYVTCVQFN  317 (626)
Q Consensus       253 ~~~~~~~~~~~--~~~h~~~V~~l~~s~~~~l~s~s-~d~~v~iwd~~~~~------~~~~~~------~~~~v~~~~~~  317 (626)
                              +..  +.+ .+..-.|++..++.++..+ .++.+.+.++....      ....+.      ++..+-.++|+
T Consensus        56 --------lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D  126 (248)
T PF06977_consen   56 --------LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD  126 (248)
T ss_dssp             --------EEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred             --------EEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence                    222  222 3567788888878555444 58889988883221      112221      44568999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCC---CeEE---Ee------ccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCce
Q 006909          318 PIDDNYFISGSIDGKVRIWGVCE---KRVV---DW------ADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDL  384 (626)
Q Consensus       318 p~~~~~l~s~s~dg~v~iwd~~~---~~~~---~~------~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~  384 (626)
                      | .++.|+.+-......+|.+..   ....   ..      ...-..+.+++++|. |++++.+.....+..+|..+.-.
T Consensus       127 ~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~  205 (248)
T PF06977_consen  127 P-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVV  205 (248)
T ss_dssp             T-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EE
T ss_pred             C-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEE
Confidence            9 666677777666677776653   1111   11      112345789999995 55666777788888888554422


Q ss_pred             eeeEEeecccc---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909          385 KLEKVDFHDRK---KTSGNKITGIQFSRDESQRIMITSEDSKLRIL  427 (626)
Q Consensus       385 ~~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw  427 (626)
                        ....+....   ...-...-+|+|.++|  .|.+.+.-+..+++
T Consensus       206 --~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  206 --SSLSLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLFYRF  247 (248)
T ss_dssp             --EEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred             --EEEEeCCcccCcccccCCccEEEECCCC--CEEEEcCCceEEEe
Confidence              222222110   0112457899999997  56666666655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.36  E-value=0.15  Score=50.19  Aligned_cols=190  Identities=12%  Similarity=0.155  Sum_probs=103.9

Q ss_pred             ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE---------------eecCCCCeEEEE-EeeCCCCEEEEEeCCCc
Q 006909          270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN---------------VFDHHNYVTCVQ-FNPIDDNYFISGSIDGK  332 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~---------------~~~~~~~v~~~~-~~p~~~~~l~s~s~dg~  332 (626)
                      .|..+...++- .|++- .|+.+.++++..-....               .+.....+...+ -....+...+......+
T Consensus        37 ~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~  115 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK  115 (275)
T ss_pred             eEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence            39999988864 44433 34999999986543333               122333444444 11213444444445568


Q ss_pred             EEEEeCCCC-----eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc------cccCCCC
Q 006909          333 VRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR------KKTSGNK  401 (626)
Q Consensus       333 v~iwd~~~~-----~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~~~  401 (626)
                      |.+|.....     ...........+.+++|.  ++.+++|..+ ...+.|+.+..... .......      ......+
T Consensus       116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~-l~~~~~~~~~~~~~~~~~~~  191 (275)
T PF00780_consen  116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSE-LLDPSDSSSSFKSRNSSSKP  191 (275)
T ss_pred             EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceE-EeCccCCcchhhhcccCCCc
Confidence            998877652     344556667889999998  5578888755 57888888554321 1111110      0111234


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCC-cce--eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGV-DVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~~~--~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +..+....+  .+|++.  +..-.+.|.. ...  ..+..   ...+.++++.  ..||+..+.+ .|.||++.++
T Consensus       192 ~~~~~~~~~--e~Ll~~--~~~g~fv~~~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~  257 (275)
T PF00780_consen  192 LGIFQLSDN--EFLLCY--DNIGVFVNKNGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETG  257 (275)
T ss_pred             eEEEEeCCc--eEEEEe--cceEEEEcCCCCcCcccEEEc---CCchhEEEEE--CCEEEEECCC-EEEEEECcCC
Confidence            444444433  355442  2233333322 111  12222   2345566663  5688887764 5999999987

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.30  E-value=0.014  Score=60.75  Aligned_cols=157  Identities=13%  Similarity=0.127  Sum_probs=97.0

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEe---CC-CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCC--cEEEEEc
Q 006909          307 HHNYVTCVQFNPIDDNYFISGS---ID-GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITG--TCHFYKA  379 (626)
Q Consensus       307 ~~~~v~~~~~~p~~~~~l~s~s---~d-g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg--~i~i~d~  379 (626)
                      ....+..-+|+| ++..++..+   .. ..+.++|+.+++..........-....|+|||+.|+... .||  .|+++|+
T Consensus       191 ~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            344566678888 766554432   22 358999999887666666666666788999999887654 455  4666677


Q ss_pred             CCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE--eCCc-ceeeeeecCCCCCeEEEEEcCCCCE
Q 006909          380 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFTTTGKH  456 (626)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw--d~~~-~~~~~~~~~~~~~v~~~~~sp~g~~  456 (626)
                      .+..... ....       .+.-+.-.|+|||...+++.+..|.-.||  +... ....+...  ...-..-.|+|||++
T Consensus       270 ~~~~~~~-Lt~~-------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~--~~~~~~p~~SpdG~~  339 (425)
T COG0823         270 DGKNLPR-LTNG-------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS--GGGNSNPVWSPDGDK  339 (425)
T ss_pred             CCCccee-cccC-------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc--CCCCcCccCCCCCCE
Confidence            6665321 1111       12333678999997777777777766555  4332 12222221  111226778999999


Q ss_pred             EEEEeCC-cc--EEEEECCCC
Q 006909          457 IISIGDD-CR--VYVWNYDEL  474 (626)
Q Consensus       457 l~s~s~d-g~--I~iwd~~~~  474 (626)
                      |+..+.. |.  |.+.++.++
T Consensus       340 i~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         340 IVFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             EEEEeccCCceeeEEeccCCC
Confidence            9887743 44  666666554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.14  Score=52.88  Aligned_cols=225  Identities=14%  Similarity=0.112  Sum_probs=139.1

Q ss_pred             ceEEEEEcCCC-e-EEEEeCCCcEEEeccCCCeeeEeecCC-CCeEEEEEeeCCCC-EEEEEeCCCcEEEEeCCCCeEEE
Q 006909          270 DVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKRVVD  345 (626)
Q Consensus       270 ~V~~l~~s~~~-~-l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~p~~~~-~l~s~s~dg~v~iwd~~~~~~~~  345 (626)
                      ....+...+++ . .++-.....+..-+............. .....++.++ .+. .+++...++.|.+.|..+.....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~-~~~~vyv~~~~~~~v~vid~~~~~~~~  110 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNP-AGNKVYVTTGDSNTVSVIDTATNTVLG  110 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCC-CCCeEEEecCCCCeEEEEcCcccceee
Confidence            34455666665 2 222222224555555422222222222 4456778888 555 56666667899999988888777


Q ss_pred             eccCCCCeEEEEEeeCCCEEEEEec---CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909          346 WADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  422 (626)
Q Consensus       346 ~~~~~~~i~~i~~sp~g~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg  422 (626)
                      ..........++++|+++.+.++..   ++++.+.|..+...... . ..+.     .+ ..+++.|+|...+++-..++
T Consensus       111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~-~vG~-----~P-~~~a~~p~g~~vyv~~~~~~  182 (381)
T COG3391         111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-I-PVGN-----TP-TGVAVDPDGNKVYVTNSDDN  182 (381)
T ss_pred             EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-E-ecCC-----Cc-ceEEECCCCCeEEEEecCCC
Confidence            6666668889999999988888776   57888888877765443 2 2221     23 89999999965666666889


Q ss_pred             cEEEEeCCcceeee-e---ecCCCCCeEEEEEcCCCCEEEEEeCC---ccEEEEECCCCCCCCC-CccCC-ccceeeecc
Q 006909          423 KLRILDGVDVIHKF-K---GLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELCFPSS-KQKNS-VRSCEHFFS  493 (626)
Q Consensus       423 ~i~iwd~~~~~~~~-~---~~~~~~~v~~~~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~-~~~~~-~~~~~~~~~  493 (626)
                      .|.+.|........ .   ...-......+.++|+|.++......   +.+...|..++..... ..... ......+.|
T Consensus       183 ~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p  262 (381)
T COG3391         183 TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP  262 (381)
T ss_pred             eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence            99999965432221 1   11123445678899999977765543   5888888887633222 11111 223345667


Q ss_pred             CCcEEEEecC
Q 006909          494 EGVSVAVQWP  503 (626)
Q Consensus       494 ~g~~~av~~s  503 (626)
                      +|...-++-+
T Consensus       263 ~g~~~yv~~~  272 (381)
T COG3391         263 AGKAAYVANS  272 (381)
T ss_pred             CCCEEEEEec
Confidence            7766555533

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0012  Score=68.38  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=78.7

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeE-EEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909          307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS-AICYIPDGKGFIVGSITGTCHFYKASGNDLK  385 (626)
Q Consensus       307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~-~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~  385 (626)
                      ....+.-+.|+| .-.++|.+..+|.|.+..+.-.++..+.-+...++ +++|.|||+.+++|-.||+|++.|+..+...
T Consensus        19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            455688899999 89999999999999999988777777775666666 9999999999999999999999999987764


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCC
Q 006909          386 LEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       386 ~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      ...      .......|+++.|.+.
T Consensus        98 ~~~------~~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen   98 VSF------LFSVETDISKGIWDRI  116 (665)
T ss_pred             ecc------ccccccchheeecccc
Confidence            331      1222367888888753

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.27  E-value=0.23  Score=51.80  Aligned_cols=183  Identities=11%  Similarity=0.147  Sum_probs=95.9

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec---CCCCe-----EEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYV-----TCVQFNPIDDNYFISGSIDGKVRIWGVCE  340 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v-----~~~~~~p~~~~~l~s~s~dg~v~iwd~~~  340 (626)
                      +.|.++.|..+..|+....||.++++|+.... ...+.   ....|     ....+.. +| .++ -..++.+.+..--.
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~G-ivv-Lt~~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NG-IVV-LTGNNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CC-EEE-ECCCCeEEEEeCcc
Confidence            89999999998888899999999999997433 11111   11122     2222222 33 222 23345554443222


Q ss_pred             Ce-EE-EeccCCCCeE---------E-EEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          341 KR-VV-DWADVRDVIS---------A-ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       341 ~~-~~-~~~~~~~~i~---------~-i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      .. .. ..........         . ..++.+....+....++.+.+.+-.....           ....+++..|+.|
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-----------i~~~~~i~~iavS  225 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-----------IDSDGPIIKIAVS  225 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-----------ccCCCCeEEEEEC
Confidence            21 11 1111111000         0 22333444444444445555333222100           0112689999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          409 RDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      |+| ++++.-..+|.+.+....  +....+... .......+.|.-+...++.-  ...|.+..
T Consensus       226 png-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  226 PNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             CCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            998 689988999999998743  333333322 23466677787554443333  33455554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.21  E-value=0.023  Score=62.74  Aligned_cols=135  Identities=19%  Similarity=0.264  Sum_probs=90.9

Q ss_pred             EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEee------CCCCEEEEEeCCCcEEEEeCCCC--eEEE----eccCCC
Q 006909          284 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP------IDDNYFISGSIDGKVRIWGVCEK--RVVD----WADVRD  351 (626)
Q Consensus       284 s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p------~~~~~l~s~s~dg~v~iwd~~~~--~~~~----~~~~~~  351 (626)
                      .......|+-.|++.|+.+..+.....+.-..+.|      .++...+.|-.+..+..||.|-.  +++.    ......
T Consensus       499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            33456789999999999999887443332333333      12344566777888999998853  2332    123445


Q ss_pred             CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909          352 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  428 (626)
Q Consensus       352 ~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd  428 (626)
                      ..+|++-+.+| +||+|+.+|.||+||--+.+       .....++-+.+|.+|..+.|| +++++.+ +..+.+++
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~-------AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR-------AKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLID  645 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecccchh-------hhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEE
Confidence            67888888888 89999999999999954321       122233446899999999998 4555444 55666766

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.12  E-value=0.23  Score=46.27  Aligned_cols=100  Identities=11%  Similarity=0.040  Sum_probs=68.5

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCC-eEEEE
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAIC  357 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-i~~i~  357 (626)
                      .++++.|+..|.+++.+..+|.....|..-+.|.+-+....++..+..|+.|++.+..|.++...+......+. ..+-+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~  142 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV  142 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence            45799999999999999999988888875555554433333899999999999999999988776654333332 33445


Q ss_pred             EeeCCCEEEEEecCCcEEEEE
Q 006909          358 YIPDGKGFIVGSITGTCHFYK  378 (626)
Q Consensus       358 ~sp~g~~l~~g~~dg~i~i~d  378 (626)
                      ..|-...|.++...|.+.--.
T Consensus       143 i~~g~~sly~a~t~G~vlavt  163 (354)
T KOG4649|consen  143 IAPGDGSLYAAITAGAVLAVT  163 (354)
T ss_pred             ecCCCceEEEEeccceEEEEc
Confidence            556333444455555544333

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.014  Score=59.56  Aligned_cols=145  Identities=14%  Similarity=0.131  Sum_probs=98.1

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC-------EEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909          324 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-------GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  396 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-------~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  396 (626)
                      |.++.....++-.|+..|+++..-.....|+-+.+.|+.+       .-++|-.+..|.-||.+-..... ..-.+.+..
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k-l~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK-LAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce-eeeeecccc
Confidence            3445555678888999999887555555588888888754       23567778889999987443311 111122222


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      .......|++-..+|  +|++|+.+|.|++||-......-..++-..+|..+..+.+|++|+..+ +..+.+-++.
T Consensus       428 ~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  428 STKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            334566777777776  899999999999999532222222334677899999999999998776 5566666653

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.0041  Score=64.47  Aligned_cols=92  Identities=16%  Similarity=0.174  Sum_probs=77.3

Q ss_pred             CccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeE-EEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909          267 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  343 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~-~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~  343 (626)
                      -...|.-+.|+|.- .+|.+..+|.|.+..+. .+.+.++. +...++ +++|.| +|+.++.|-.||+|++.|+.++..
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence            34568889999975 89999999999999998 78888887 777777 999999 999999999999999999998876


Q ss_pred             EEe--ccCCCCeEEEEEee
Q 006909          344 VDW--ADVRDVISAICYIP  360 (626)
Q Consensus       344 ~~~--~~~~~~i~~i~~sp  360 (626)
                      +.-  ......|.++-|.+
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            654  45566777777763

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.86  E-value=0.083  Score=57.44  Aligned_cols=186  Identities=12%  Similarity=0.091  Sum_probs=98.8

Q ss_pred             cCccceEEEEEcCCC-eEEEEe------CCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC------
Q 006909          266 GHKGDVLDLAWSNSN-YLLSCS------MDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------  330 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s~s------~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d------  330 (626)
                      +....+...+++|+| .++...      .|.  .|.+++.. +.. ..+-.....+.-.|+| ++..+.+.+..      
T Consensus       347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECC-CCCceEEEecCcceEEE
Confidence            333467888999998 444332      243  45555543 222 2222223478889999 87777666532      


Q ss_pred             ------CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEE---EEcCCCceeee-EEeeccccccCCC
Q 006909          331 ------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF---YKASGNDLKLE-KVDFHDRKKTSGN  400 (626)
Q Consensus       331 ------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i---~d~~~~~~~~~-~~~~~~~~~~~~~  400 (626)
                            +.+.+.++..+....  .....|..+.|+|||..++... +|.|++   -....+...+. ...+.   .....
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~---~~l~~  497 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG---PGLGD  497 (591)
T ss_pred             eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee---cccCC
Confidence                  233333444433332  3456799999999999988866 467766   33233332111 01111   11123


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEe--CCcceeee-eecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILD--GVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd--~~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      .+.++.|.+++ . |+++..++...+|.  +.-..... .......++..++-+++  .|+....++
T Consensus       498 ~~~~l~W~~~~-~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g  560 (591)
T PRK13616        498 TAVSLDWRTGD-S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA  560 (591)
T ss_pred             ccccceEecCC-E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence            46889999997 3 45655555555554  32221111 22112455666665542  344444455

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.86  E-value=0.59  Score=50.13  Aligned_cols=155  Identities=15%  Similarity=0.137  Sum_probs=91.6

Q ss_pred             CeEEEEeCCCcEEEeccCCCeeeEeecCCCC------eE-EEEEeeCCCCEEEEEe---------CCCcEEEEeCCCCeE
Q 006909          280 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------VT-CVQFNPIDDNYFISGS---------IDGKVRIWGVCEKRV  343 (626)
Q Consensus       280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~------v~-~~~~~p~~~~~l~s~s---------~dg~v~iwd~~~~~~  343 (626)
                      +.++.++.++.|.-+|.++|+.+..+.....      +. ...+.   +..++.++         .++.|..+|..+++.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            6888888999999999999999988764332      11 12222   24455554         367889999988875


Q ss_pred             EEeccCC-C--------------------Ce-EEEEEeeCCCEEEEEecCC------------------cEEEEEcCCCc
Q 006909          344 VDWADVR-D--------------------VI-SAICYIPDGKGFIVGSITG------------------TCHFYKASGND  383 (626)
Q Consensus       344 ~~~~~~~-~--------------------~i-~~i~~sp~g~~l~~g~~dg------------------~i~i~d~~~~~  383 (626)
                      +=..... .                    .+ .+..+.+.+..+++++.++                  .+.-+|..+++
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            5322110 0                    01 1345555667888887665                  68889998888


Q ss_pred             eeeeEEee-cccc--ccCCCCe-EEEEEcCCC--CcEEEEEeCCCcEEEEeCCcceeeeee
Q 006909          384 LKLEKVDF-HDRK--KTSGNKI-TGIQFSRDE--SQRIMITSEDSKLRILDGVDVIHKFKG  438 (626)
Q Consensus       384 ~~~~~~~~-~~~~--~~~~~~i-~~l~~s~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~  438 (626)
                      ........ +...  .....++ ..+. .-++  ...+++++.+|.+..+|..+.......
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence            76542111 1000  0000111 1111 0122  125778888999999998876655543

The alignment model contains an 8-bladed beta-propeller.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.66  E-value=0.19  Score=54.66  Aligned_cols=195  Identities=16%  Similarity=0.170  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCeEEEEeCC------CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc-----EEEEeCC
Q 006909          271 VLDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-----VRIWGVC  339 (626)
Q Consensus       271 V~~l~~s~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~-----v~iwd~~  339 (626)
                      -.+++..++...++|+.|      .++..||..+++-...-.-...-........++.+.++|+.||.     |-.||..
T Consensus       325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence            344555555577888888      35778888877754432222222222222227889999999864     7788887


Q ss_pred             CCeEEEeccCCCCeEEEEE-eeCCCEEEEEecCC------cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          340 EKRVVDWADVRDVISAICY-IPDGKGFIVGSITG------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       340 ~~~~~~~~~~~~~i~~i~~-sp~g~~l~~g~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      +.+-............... .-+|+..++|+.++      ++..||..++...... .+...     ..-..++...+  
T Consensus       405 ~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~-~M~~~-----R~~~g~a~~~~--  476 (571)
T KOG4441|consen  405 TNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA-PMNTR-----RSGFGVAVLNG--  476 (571)
T ss_pred             CCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC-Ccccc-----cccceEEEECC--
Confidence            7654333323222222222 34777888888654      5678888877654321 11111     11122343333  


Q ss_pred             cEEEEEeCCC-----cEEEEeCCcceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCc-----cEEEEECCCC
Q 006909          413 QRIMITSEDS-----KLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL  474 (626)
Q Consensus       413 ~~l~~~s~dg-----~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg-----~I~iwd~~~~  474 (626)
                      .++++|+.|+     +|..||..+..-.... ......-..++ .-+++..+.|+.||     +|-.||..+.
T Consensus       477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCCCC
Confidence            6788888776     3677876543222221 11111111112 12566677777665     4566655543

>smart00320 WD40 WD40 repeats

Probab=96.65  E-value=0.0038  Score=39.41  Aligned_cols=36  Identities=42%  Similarity=0.752  Sum_probs=31.2

Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEec
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ  295 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd  295 (626)
                      +...+..|...|.++.|++.+ .+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456667899999999999875 899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.57  E-value=0.51  Score=45.17  Aligned_cols=165  Identities=10%  Similarity=0.154  Sum_probs=110.4

Q ss_pred             ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                      .|-...|.++.|+|+. .|++......-.||=...|+.+.++.  .-.....+.+.. ++.+.++--.++.+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence            3445569999999986 77777777777888777899998885  223445677776 6677777677888888876543


Q ss_pred             e-EEE---------eccC-CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee--EEeecc-ccccCCCCeEEEEE
Q 006909          342 R-VVD---------WADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--KVDFHD-RKKTSGNKITGIQF  407 (626)
Q Consensus       342 ~-~~~---------~~~~-~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~--~~~~~~-~~~~~~~~i~~l~~  407 (626)
                      . ...         ...+ ....-.++|.|....|.++-.-.-+.||.+........  ....+. ...-.-..|.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            2 111         1112 45677899999999999998888888887764332211  000000 00011245778889


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCC
Q 006909          408 SRDESQRIMITSEDSKLRILDGV  430 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~  430 (626)
                      .+....+++.+.+++.+.-.|..
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecC
Confidence            87765677778888888888755

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.51  E-value=0.22  Score=54.20  Aligned_cols=142  Identities=11%  Similarity=0.102  Sum_probs=77.8

Q ss_pred             eEEEEEcCCC-eEEEEeCC------------CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE--
Q 006909          271 VLDLAWSNSN-YLLSCSMD------------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI--  335 (626)
Q Consensus       271 V~~l~~s~~~-~l~s~s~d------------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i--  335 (626)
                      .+.-.|+|+| .|++.+..            +.+.+.++..+....  .....|..+.|+| +|..++... ++.|.+  
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence            6667888885 55554322            233333444333322  3356799999999 999888766 577777  


Q ss_pred             -EeCCCCeEEE-----e-ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEc--CCCceeeeEEeeccccccCCCCeEEEE
Q 006909          336 -WGVCEKRVVD-----W-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKA--SGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       336 -wd~~~~~~~~-----~-~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                       -....+...-     + ......+.++.|..++.+ +++..++...+|.+  .+.....  +  ..  .....++..++
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~--~--~~--~n~~~~v~~va  547 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDA--L--PS--RNLSAPVVAVA  547 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEecCCccccc--c--CC--CCccCceEEEe
Confidence             4434444111     1 223344688999999984 46665554445544  3322111  0  00  01125666776


Q ss_pred             EcCCCCcEEEEEeCCCcEEE
Q 006909          407 FSRDESQRIMITSEDSKLRI  426 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~i  426 (626)
                      -+++   .++++..++.+.+
T Consensus       548 a~~~---~iyv~~~~g~~~l  564 (591)
T PRK13616        548 ASPS---TVYVTDARAVLQL  564 (591)
T ss_pred             cCCc---eEEEEcCCceEEe
Confidence            6653   3555555664444

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.48  E-value=1  Score=44.72  Aligned_cols=187  Identities=13%  Similarity=0.060  Sum_probs=105.4

Q ss_pred             EEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE-EEecc---
Q 006909          275 AWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWAD---  348 (626)
Q Consensus       275 ~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~---  348 (626)
                      .|.++.  ++.+--..+.|.-|+..+++. ..+.+...+.++.... .+..|+++.  .-+.+++...+.. ..+..   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence            345543  444555667888888875543 4455555556665554 455555544  3466777665544 22111   


Q ss_pred             --CCCCeEEEEEeeCCCEEEEEec-----------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          349 --VRDVISAICYIPDGKGFIVGSI-----------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       349 --~~~~i~~i~~sp~g~~l~~g~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                        .....+.+...|+|.+.+....           -|.++.++.. +.. .....-      +-..-++|+||||+..++
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~-~~l~~~------~~~~~NGla~SpDg~tly  178 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGV-VRLLDD------DLTIPNGLAFSPDGKTLY  178 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCE-EEeecC------cEEecCceEECCCCCEEE
Confidence              1244667888899876554333           1334444432 211 111110      013456899999996555


Q ss_pred             EEEeCCCcEEEEeCCc-------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc-cEEEEECCC
Q 006909          416 MITSEDSKLRILDGVD-------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYDE  473 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg-~I~iwd~~~  473 (626)
                      ++=+..+.|.-|+...       ....+......+..-.++...+|.+.+++-.+| .|.+|+.+.
T Consensus       179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG  244 (307)
T COG3386         179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG  244 (307)
T ss_pred             EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC
Confidence            5556668888887541       111111112345666777888888876555554 899999883

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.46  E-value=1.4  Score=45.65  Aligned_cols=184  Identities=10%  Similarity=0.138  Sum_probs=99.5

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC---C----------------
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE---K----------------  341 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~---~----------------  341 (626)
                      .++.-+.||++.+++-+.......+..---...+.+.+ ..+.|++++.+..+..|....   .                
T Consensus       147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~  225 (418)
T PF14727_consen  147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS  225 (418)
T ss_pred             EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence            78889999999999987655444444322334567777 778888888888888886421   0                


Q ss_pred             -eEEE---eccCCCCeEEEEEee---CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE------c
Q 006909          342 -RVVD---WADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF------S  408 (626)
Q Consensus       342 -~~~~---~~~~~~~i~~i~~sp---~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~------s  408 (626)
                       +...   .......+..|..-.   ....+++-+ ..++.+.+..+ .... ...+..      .+.....|      .
T Consensus       226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G-~l~~-~krLd~------~p~~~~~Y~~~~~~~  296 (418)
T PF14727_consen  226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNG-SLRF-QKRLDY------NPSCFCPYRVPWYNE  296 (418)
T ss_pred             cccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCC-eEEE-EEecCC------ceeeEEEEEeecccC
Confidence             0000   112223344444322   222232222 33455554433 2211 111111      11111112      2


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +.....+++++.++++.||.-.+..-........-.+....|..-...|++-+.+|.+.+--+.+.
T Consensus       297 ~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd  362 (418)
T PF14727_consen  297 PSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD  362 (418)
T ss_pred             CCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence            222235899999999999985554443333111112223334344567888888999998888764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.38  E-value=0.23  Score=51.96  Aligned_cols=134  Identities=11%  Similarity=0.159  Sum_probs=71.6

Q ss_pred             CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC------------eEEEec
Q 006909          280 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK------------RVVDWA  347 (626)
Q Consensus       280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~------------~~~~~~  347 (626)
                      |.|+....++.|.+||+.+++.++.+.... |..+.|++ ++++++..+. ..+.+++....            ......
T Consensus       117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~  193 (443)
T PF04053_consen  117 GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIH  193 (443)
T ss_dssp             SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE
T ss_pred             CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEE
Confidence            534433444589999999999999998665 99999999 8999988875 46888876554            344444


Q ss_pred             cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909          348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  427 (626)
Q Consensus       348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw  427 (626)
                      .....|.+.+|..+  .++-.+.. .++.  +.+++...-  ..-      ..++.=+.+.+.. ..+.....|+.|..+
T Consensus       194 E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i--~~l------d~~~yllgy~~~~-~~ly~~Dr~~~v~~~  259 (443)
T PF04053_consen  194 EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGII--AHL------DKPLYLLGYLPKE-NRLYLIDRDGNVISY  259 (443)
T ss_dssp             EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEE--EE-------SS--EEEEEETTT-TEEEEE-TT--EEEE
T ss_pred             EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceE--EEc------CCceEEEEEEccC-CEEEEEECCCCEEEE
Confidence            44677888888765  44444444 5555  333332111  111      1455556666653 467777777777776


Q ss_pred             eCC
Q 006909          428 DGV  430 (626)
Q Consensus       428 d~~  430 (626)
                      .+.
T Consensus       260 ~ld  262 (443)
T PF04053_consen  260 ELD  262 (443)
T ss_dssp             E--
T ss_pred             EEC
Confidence            644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.34  E-value=1.2  Score=43.73  Aligned_cols=138  Identities=13%  Similarity=0.148  Sum_probs=85.6

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-------------
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-------------  345 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-------------  345 (626)
                      +..|+.|+.+| +.++++..............|..+...| +-+.+++-+ |+.++++++..-....             
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            34888898888 8999984343334444444599999998 777777665 5999999986533222             


Q ss_pred             --eccCCCCeEEEE--EeeCCCEEEEEecCCcEEEEEcCCCce----eeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          346 --WADVRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       346 --~~~~~~~i~~i~--~sp~g~~l~~g~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                        .......+...+  -.+.+...++......|.+|.......    ....+...       ..+..++|.++   .++.
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~~~---~i~v  153 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFLGN---KICV  153 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEeCC---EEEE
Confidence              112223344444  123444445555566999998876422    22233332       67899999954   5666


Q ss_pred             EeCCCcEEEEeCC
Q 006909          418 TSEDSKLRILDGV  430 (626)
Q Consensus       418 ~s~dg~i~iwd~~  430 (626)
                      |..+ ...+.|+.
T Consensus       154 ~~~~-~f~~idl~  165 (275)
T PF00780_consen  154 GTSK-GFYLIDLN  165 (275)
T ss_pred             EeCC-ceEEEecC
Confidence            6644 47777766

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.34  E-value=1.7  Score=45.57  Aligned_cols=195  Identities=14%  Similarity=0.141  Sum_probs=101.8

Q ss_pred             ceEEEEEcCCC-eEE-EEeCCC----cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC-----------c
Q 006909          270 DVLDLAWSNSN-YLL-SCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-----------K  332 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~-s~s~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg-----------~  332 (626)
                      .+....++|++ +++ +.+..|    +|++.|+.+++.+...-.......+.|.+ +++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeC-CCCEEEEEEeCcccccccCCCCcE
Confidence            34467889988 444 434444    59999999997765331111223499999 877776665433           3


Q ss_pred             EEEEeCCCCe----EEEeccCCCC-eEEEEEeeCCCEEEEEecCC----cEEEEEcCCC---ceeeeEEeeccccccCCC
Q 006909          333 VRIWGVCEKR----VVDWADVRDV-ISAICYIPDGKGFIVGSITG----TCHFYKASGN---DLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       333 v~iwd~~~~~----~~~~~~~~~~-i~~i~~sp~g~~l~~g~~dg----~i~i~d~~~~---~~~~~~~~~~~~~~~~~~  400 (626)
                      |+.|.+.+..    ++........ ...+..+++++++++....+    .+.+.++...   ......+....     .+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-----~~  278 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-----DG  278 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-----SS
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-----Cc
Confidence            7888876643    2222222222 66888999999988755433    4677777664   22222222211     12


Q ss_pred             CeEEEEEcCCCCcEEEEEeC---CCcEEEEeCCccee---eeeecCCCCCeEEEEEcCCCCEEEEE-eCC--ccEEEEEC
Q 006909          401 KITGIQFSRDESQRIMITSE---DSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISI-GDD--CRVYVWNY  471 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~---dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~s~-s~d--g~I~iwd~  471 (626)
                      ....+... .+ .+++.+..   .+.|...++.....   ......+...+.-..+...+.+|+.. ..+  ..|+++++
T Consensus       279 ~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  279 VEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             -EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred             eEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence            22333333 32 44444433   35666667664431   11222244433333333445555544 334  36888998


Q ss_pred             C
Q 006909          472 D  472 (626)
Q Consensus       472 ~  472 (626)
                      .
T Consensus       357 ~  357 (414)
T PF02897_consen  357 D  357 (414)
T ss_dssp             T
T ss_pred             C
Confidence            8

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.08  E-value=2  Score=44.22  Aligned_cols=99  Identities=12%  Similarity=0.078  Sum_probs=58.1

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEEEeccCCC-----ee---eEeecC-----CCCeEEEEEeeCCCCEEEEEeCC-----
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-----QC---LNVFDH-----HNYVTCVQFNPIDDNYFISGSID-----  330 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~-----~~---~~~~~~-----~~~v~~~~~~p~~~~~l~s~s~d-----  330 (626)
                      .....+++.+++ |+.++.....++.|....     +.   +..+..     ......++|.| ++.+.++-+..     
T Consensus        72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV  149 (367)
T ss_pred             CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence            355788888888 555555543444455321     11   122221     34477899999 88876655421     


Q ss_pred             --------------CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe
Q 006909          331 --------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS  369 (626)
Q Consensus       331 --------------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~  369 (626)
                                    |.|.-++..+++...+...-.....++|+|+|+.+++-.
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                          345556666555444333334466899999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.08  E-value=0.11  Score=53.31  Aligned_cols=137  Identities=16%  Similarity=0.248  Sum_probs=92.8

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCC-------EEEEEeCCCcEEEEeCCCCe--EEEec----
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-------YFISGSIDGKVRIWGVCEKR--VVDWA----  347 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~-------~l~s~s~dg~v~iwd~~~~~--~~~~~----  347 (626)
                      .|.++.....++-.|++.|+.+........|+-+.+.| +..       .-+.|-.|..|.-||.+-..  .+.+.    
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            45566667788889999999999988666688888877 432       23345567788889987322  22211    


Q ss_pred             -cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909          348 -DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  426 (626)
Q Consensus       348 -~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i  426 (626)
                       .......|.+-..+| ++++|+.+|.|++||-......       ...++.+.+|+.+..+.+| .+|+ |..+..+.+
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AK-------TAlPgLG~~I~hVdvtadG-Kwil-~Tc~tyLlL  496 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAK-------TALPGLGDAIKHVDVTADG-KWIL-ATCKTYLLL  496 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhh-------hcccccCCceeeEEeeccC-cEEE-EecccEEEE
Confidence             223445666666666 8999999999999997332221       1133446899999999998 4444 444566767


Q ss_pred             Ee
Q 006909          427 LD  428 (626)
Q Consensus       427 wd  428 (626)
                      .+
T Consensus       497 i~  498 (644)
T KOG2395|consen  497 ID  498 (644)
T ss_pred             EE
Confidence            66

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.94  E-value=1.7  Score=41.77  Aligned_cols=166  Identities=12%  Similarity=0.159  Sum_probs=99.8

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ..+.+.|-+..|.++.|+|+.+.|.+......-.||=...|+.....                                 
T Consensus        77 ~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti---------------------------------  123 (316)
T COG3204          77 DAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI---------------------------------  123 (316)
T ss_pred             eccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe---------------------------------
Confidence            34446677777999999999998888877776666654443321110                                 


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeee----------EeecC-CCCeEEEEEeeCC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL----------NVFDH-HNYVTCVQFNPID  320 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~----------~~~~~-~~~v~~~~~~p~~  320 (626)
                                .+.+ -...-.|.+..+| +.++--.++.+.++.+.....+          ....+ +.....++|.| .
T Consensus       124 ----------PL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~  191 (316)
T COG3204         124 ----------PLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-V  191 (316)
T ss_pred             ----------cccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-C
Confidence                      0111 1222345555555 4444455666666655433211          11123 45678999999 7


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCe-EEE---eccC-------CCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCc
Q 006909          321 DNYFISGSIDGKVRIWGVCEKR-VVD---WADV-------RDVISAICYIP-DGKGFIVGSITGTCHFYKASGND  383 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~-~~~---~~~~-------~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~  383 (626)
                      .+.|+.+-.-.-+.||.+.... ...   ...+       -..|.++.|++ .+..++.+..++.+.-.|..+.-
T Consensus       192 ~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         192 DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence            7777777777778888765433 111   1111       12367788887 56677777788888888877653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.88  E-value=0.55  Score=44.60  Aligned_cols=114  Identities=13%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             eEEEeccCCCCeEEEEEeeCC-CEEEEEecCCc-EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909          342 RVVDWADVRDVISAICYIPDG-KGFIVGSITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  419 (626)
Q Consensus       342 ~~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s  419 (626)
                      +++........-..|.++|.- ..++.+-.-|+ ..++|..+.+.+.......++     ...-.=.||||| .+|.+.-
T Consensus        59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R-----HfyGHGvfs~dG-~~LYATE  132 (366)
T COG3490          59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR-----HFYGHGVFSPDG-RLLYATE  132 (366)
T ss_pred             ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc-----eeecccccCCCC-cEEEeec
Confidence            333334445555667888854 44555555554 567888877765543322221     111223599998 5666664


Q ss_pred             CC-----CcEEEEeCCcceee-eeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909          420 ED-----SKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       420 ~d-----g~i~iwd~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      .|     |.|-|||.+...+. -+...|.-....+.+.+||+.|+.+.
T Consensus       133 ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         133 NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            44     78999998744332 23344666677899999999998874

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.76  E-value=0.19  Score=51.86  Aligned_cols=119  Identities=17%  Similarity=0.196  Sum_probs=78.2

Q ss_pred             CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee-----e-----------------EEeeccc--------------c
Q 006909          352 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----E-----------------KVDFHDR--------------K  395 (626)
Q Consensus       352 ~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~-----~-----------------~~~~~~~--------------~  395 (626)
                      .|+.++|.++...|++|...|.+.+|....++...     .                 ......+              .
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47899999999999999999999998875432211     0                 0011110              0


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee--------cCCCCCeEEEEEcC-----CC---CEEEE
Q 006909          396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG--------LPKSGSQMSASFTT-----TG---KHIIS  459 (626)
Q Consensus       396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~sp-----~g---~~l~s  459 (626)
                      ....++|++++.|.=|  ++++|..+|.+.|.|++.+.-.+..        ......++++.|+.     |+   -.+++
T Consensus        83 ~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             ---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            1135899999999876  9999999999999999866555543        12345677888852     33   56888


Q ss_pred             EeCCccEEEEECC
Q 006909          460 IGDDCRVYVWNYD  472 (626)
Q Consensus       460 ~s~dg~I~iwd~~  472 (626)
                      |+..|.+.+|.+.
T Consensus       161 GTn~G~v~~fkIl  173 (395)
T PF08596_consen  161 GTNSGNVLTFKIL  173 (395)
T ss_dssp             EETTSEEEEEEEE
T ss_pred             EeCCCCEEEEEEe
Confidence            9999999999885

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.71  E-value=0.036  Score=37.41  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=28.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT  211 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~  211 (626)
                      ...|.+++|+|...+||.|..+|.|.|+.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999984

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.70  E-value=0.095  Score=58.44  Aligned_cols=153  Identities=10%  Similarity=-0.006  Sum_probs=93.9

Q ss_pred             CCeEEEEEeeCCCEEEEEecC--CcEEEEEcCCCceeee----EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 006909          351 DVISAICYIPDGKGFIVGSIT--GTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL  424 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l~~g~~d--g~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i  424 (626)
                      -++..+...+|+...++....  -.|..||++.-.....    .+..+...........++.|.|.-....++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345566666777665554433  3788999875443221    1111111111234566788998766667888899999


Q ss_pred             EEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCC
Q 006909          425 RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  504 (626)
Q Consensus       425 ~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~  504 (626)
                      ++..+...............+++++|+|.|+.++.|-..|++.-|...-.       .+..+.+..+-+++.++.+.|-.
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-------ik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-------IKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-------eeecccCCCcCCCcceeEEEEec
Confidence            99887644433333345677899999999999999999999988875532       11122222223345566666655


Q ss_pred             CCcccc
Q 006909          505 IGTEQK  510 (626)
Q Consensus       505 ~~~~l~  510 (626)
                      ....++
T Consensus       254 t~eflv  259 (1405)
T KOG3630|consen  254 TQEFLV  259 (1405)
T ss_pred             ceeEEE
Confidence            544443

>PHA02713 hypothetical protein; Provisional

Probab=95.52  E-value=0.54  Score=51.24  Aligned_cols=185  Identities=9%  Similarity=0.084  Sum_probs=92.2

Q ss_pred             CCCeEEEEeCC------CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCC-----cEEEEeCCCCeEE
Q 006909          278 NSNYLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVV  344 (626)
Q Consensus       278 ~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg-----~v~iwd~~~~~~~  344 (626)
                      .+..++.|+.+      ..+..||..++.....-.  ....-.+++..  ++.+.+.|+.++     ++..||..+.+=.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            33456666643      347788887765432221  11111122222  678888888764     4888998876543


Q ss_pred             EeccCCCCeEE-EEEeeCCCEEEEEecCC-----------------------cEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          345 DWADVRDVISA-ICYIPDGKGFIVGSITG-----------------------TCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       345 ~~~~~~~~i~~-i~~sp~g~~l~~g~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      .......+... ....-+|+..++|+.++                       .+..||..+....... .+....    .
T Consensus       381 ~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~r----~  455 (557)
T PHA02713        381 MLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTGT----I  455 (557)
T ss_pred             ECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCccc----c
Confidence            32222221111 11123677777777653                       4677887766543211 111100    1


Q ss_pred             CeEEEEEcCCCCcEEEEEeCC------CcEEEEeCCc-ceee-eeecC-CCCCeEEEEEcCCCCEEEEEeCCc--cEEEE
Q 006909          401 KITGIQFSRDESQRIMITSED------SKLRILDGVD-VIHK-FKGLP-KSGSQMSASFTTTGKHIISIGDDC--RVYVW  469 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~d------g~i~iwd~~~-~~~~-~~~~~-~~~~v~~~~~sp~g~~l~s~s~dg--~I~iw  469 (626)
                      . .+++.. +| .+.+.|+.+      ..+..||..+ ..-. ....+ .......+.  -+|+..++|+.|+  .+..|
T Consensus       456 ~-~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~y  530 (557)
T PHA02713        456 R-PGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTF  530 (557)
T ss_pred             c-CcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhc
Confidence            1 122222 23 566666654      2467788664 2222 21111 111222222  3678888888887  66667


Q ss_pred             ECCCC
Q 006909          470 NYDEL  474 (626)
Q Consensus       470 d~~~~  474 (626)
                      |..+.
T Consensus       531 d~~~~  535 (557)
T PHA02713        531 NVYTY  535 (557)
T ss_pred             Ccccc
Confidence            76654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.51  E-value=3.4  Score=42.28  Aligned_cols=153  Identities=15%  Similarity=0.225  Sum_probs=74.4

Q ss_pred             CCC-eEEEE--eC----CCcEEEeccCCCeeeEeecC----CCCeEEEEEeeCCCCEEEEEeC-----------------
Q 006909          278 NSN-YLLSC--SM----DKTVRMWQVGCNQCLNVFDH----HNYVTCVQFNPIDDNYFISGSI-----------------  329 (626)
Q Consensus       278 ~~~-~l~s~--s~----d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~s~s~-----------------  329 (626)
                      |+| .++|+  ..    -|-+.+.|-++.........    ...-..+.|.| ..+.++|...                 
T Consensus       139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhc
Confidence            566 55554  22    24577788777766665532    33456778888 8888887643                 


Q ss_pred             ---CCcEEEEeCCCCeEEEeccCC---CCeEEEEEeeC--CCEEEE-EecCCcE-EEEEcCCCceeee-EEeecccc---
Q 006909          330 ---DGKVRIWGVCEKRVVDWADVR---DVISAICYIPD--GKGFIV-GSITGTC-HFYKASGNDLKLE-KVDFHDRK---  395 (626)
Q Consensus       330 ---dg~v~iwd~~~~~~~~~~~~~---~~i~~i~~sp~--g~~l~~-g~~dg~i-~i~d~~~~~~~~~-~~~~~~~~---  395 (626)
                         ..++.+||+.+.+.++.....   .....+.|..+  ..+-.+ +...++| ++|....+....+ .+......   
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence               357999999999988766654   23556666554  333333 3334444 4444355554444 22222210   


Q ss_pred             ----------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          396 ----------KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       396 ----------~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                                .....-|+.|..|.|+..+.++.=..|.|+.||+.+
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence                      001345899999999855555666789999999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.51  E-value=1.2  Score=42.34  Aligned_cols=184  Identities=11%  Similarity=0.163  Sum_probs=101.8

Q ss_pred             EEcCCCCEEEEEeC-----CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          188 KFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       188 ~fspdg~~Latgs~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      .|||||.+|...-.     -|.|-|||...+                                            .+.+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--------------------------------------------fqrvg  155 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--------------------------------------------FQRVG  155 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccc--------------------------------------------cceec
Confidence            58999998887643     378999998753                                            23345


Q ss_pred             eeccCccceEEEEEcCCCeEEEEeCCC-------------------cEEEeccCCCeeeEeec-----CCCCeEEEEEee
Q 006909          263 ELHGHKGDVLDLAWSNSNYLLSCSMDK-------------------TVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP  318 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~~l~s~s~d~-------------------~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p  318 (626)
                      ++..|.-.-..+.|.+||.++.....|                   .+.+.|..+|..+....     +...|..++..+
T Consensus       156 E~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~  235 (366)
T COG3490         156 EFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR  235 (366)
T ss_pred             ccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC
Confidence            566666666778888888444332221                   23333444444443321     334567777776


Q ss_pred             CCCCEEEEEeCCCc-----EEEEeCCCCeEEEec--------cCCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCCCce
Q 006909          319 IDDNYFISGSIDGK-----VRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDL  384 (626)
Q Consensus       319 ~~~~~l~s~s~dg~-----v~iwd~~~~~~~~~~--------~~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~~~~  384 (626)
                       ++..++-+-..|.     -.+=-...++.+...        .....|-+|+.+-+..+++..+-. +...+||..++..
T Consensus       236 -dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v  314 (366)
T COG3490         236 -DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV  314 (366)
T ss_pred             -CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence             6655554433221     111111222222221        223457778887766566655554 4567899998876


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909          385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  428 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd  428 (626)
                      ......         .....++-...   -+++.+.+|.+.++.
T Consensus       315 v~~a~l---------~daaGva~~~~---gf~vssg~G~~~~~s  346 (366)
T COG3490         315 VSEAAL---------PDAAGVAAAKG---GFAVSSGQGRIIFYS  346 (366)
T ss_pred             Eecccc---------cccccceeccC---ceEEecCCceEEecc
Confidence            543111         12233444333   367777788888774

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.41  E-value=0.057  Score=49.38  Aligned_cols=141  Identities=13%  Similarity=0.099  Sum_probs=78.0

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEE--eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          324 FISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +...+.+|.|+-++++..+...  ..-+...   .....-+..+++|+.+|.|++|..............      ....
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------~~e~  103 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------GEES  103 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhc------cccc
Confidence            3344567777777665432211  0111111   111224567999999999999988733222111111      1133


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee-eeecCCC-CCeEEEEEcCCCCEEEEE--eCCccEEEEECCCC
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKGLPKS-GSQMSASFTTTGKHIISI--GDDCRVYVWNYDEL  474 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~~~~~-~~v~~~~~sp~g~~l~s~--s~dg~I~iwd~~~~  474 (626)
                      |.++.-.-+...+..+++.+|.|+.|++...... +.++ |. .++.....+..+++|+++  |.|..++.|++...
T Consensus       104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~-h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ-HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ceeccccccccceeEEeccCCceeeeccccCceeeeecc-ccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            3333322222358889999999999997643322 2232 33 455555555666777777  77777777777653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.18  E-value=3.1  Score=39.80  Aligned_cols=187  Identities=12%  Similarity=0.043  Sum_probs=106.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          184 IWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      .-.+.|..+|.++-+.|.-|  .|+.+|+.+++.......+..                                     
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-------------------------------------   89 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-------------------------------------   89 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------------------------------------
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-------------------------------------
Confidence            34677877888888887766  788999988654322111110                                     


Q ss_pred             eeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                             ----.++...+....-.-.++...+||..+.+.+..+.....=+.++.   ++..|+...-...++++|..+-
T Consensus        90 -------~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen   90 -------YFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             ---------EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-
T ss_pred             -------ccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCcceEEEc---CCCEEEEECCccceEEECCccc
Confidence                   111122333333333444568899999999999999987777778874   6666766666678999998765


Q ss_pred             eEEEe---ccCC---CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc---------cccCCCCeEEEE
Q 006909          342 RVVDW---ADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---------KKTSGNKITGIQ  406 (626)
Q Consensus       342 ~~~~~---~~~~---~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~i~~l~  406 (626)
                      +....   ....   ..++-+.|. +|...|=.=....|...|..++..... +.+.+-         ......-.++|+
T Consensus       160 ~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~-iDls~L~~~~~~~~~~~~~~dVLNGIA  237 (264)
T PF05096_consen  160 KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGW-IDLSGLRPEVGRDKSRQPDDDVLNGIA  237 (264)
T ss_dssp             SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEE-EE-HHHHHHHTSTTST--TTS-EEEEE
T ss_pred             ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEE-EEhhHhhhcccccccccccCCeeEeEe
Confidence            44332   2222   235556664 565444444556777777777765432 221111         111245688999


Q ss_pred             EcCCCCcEEEEEe
Q 006909          407 FSRDESQRIMITS  419 (626)
Q Consensus       407 ~s~~~~~~l~~~s  419 (626)
                      +.|....++++|-
T Consensus       238 yd~~~~~l~vTGK  250 (264)
T PF05096_consen  238 YDPETDRLFVTGK  250 (264)
T ss_dssp             EETTTTEEEEEET
T ss_pred             EeCCCCEEEEEeC
Confidence            9998766666653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.13  E-value=0.44  Score=53.24  Aligned_cols=98  Identities=16%  Similarity=0.278  Sum_probs=70.6

Q ss_pred             CeEEEEeCCCcEEEeccCCCee--eEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEE-
Q 006909          280 NYLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISA-  355 (626)
Q Consensus       280 ~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~-  355 (626)
                      +.++.|+..|.|-..|+.++-.  .+--....+|++++|+. +|..++.|-.+|.|.+||+..+++.+ +..+..+.+. 
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            3688888889999888876422  22223567999999999 99999999999999999999877655 3344444333 


Q ss_pred             --EEEeeCCCEEEEEecCCcEEEEEcC
Q 006909          356 --ICYIPDGKGFIVGSITGTCHFYKAS  380 (626)
Q Consensus       356 --i~~sp~g~~l~~g~~dg~i~i~d~~  380 (626)
                        +.+..++..++++...|.  +|.+.
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEEE
Confidence              344456667888877776  56543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.12  E-value=0.084  Score=35.66  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC
Q 006909          348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  381 (626)
Q Consensus       348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~  381 (626)
                      .....|.+++|+|....+|+++.+|.|.+|.++.
T Consensus         9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen    9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            4456799999999999999999999999999843

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.99  E-value=4.7  Score=40.87  Aligned_cols=172  Identities=16%  Similarity=0.168  Sum_probs=82.5

Q ss_pred             CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC---CC-cEEEEeC--CCCeEEEeccC--CCCeEEEEEee
Q 006909          289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---DG-KVRIWGV--CEKRVVDWADV--RDVISAICYIP  360 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---dg-~v~iwd~--~~~~~~~~~~~--~~~i~~i~~sp  360 (626)
                      +.|.--|+.+|+....+....++..+.|+|.++..|+.|-.   +. .-|||-+  .+.....+..+  ...+..=-|.|
T Consensus       168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~  247 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP  247 (386)
T ss_dssp             EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred             ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence            34666688888888888888899999999988888887643   22 1356644  44444333322  23344556889


Q ss_pred             CCCEEEEEec-----CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC-------------
Q 006909          361 DGKGFIVGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-------------  422 (626)
Q Consensus       361 ~g~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg-------------  422 (626)
                      ||..|.--+.     +..|.-+|+.+.....  + ...      .....+-.++|| .+++-=+.|.             
T Consensus       248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~-~~~------p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~  317 (386)
T PF14583_consen  248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--L-MEM------PWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIE  317 (386)
T ss_dssp             TSS-EEEEEEETTT--EEEEEE-TTT--EEE--E-EEE-------SEEEEEE-TTS-SEEEEEE----------------
T ss_pred             CCCEEEEEeecCCCCceEEEeeCCCCCCceE--E-EeC------CceeeeEEcCCC-CEEEecCCCCCccccccccceec
Confidence            9987765322     3356666776654321  1 111      133455567786 4444333331             


Q ss_pred             ---cEEEEeCCcceee-eeecC-------C--CCCeEEEEEcCCCCEEEEEeC-CccEEEEE
Q 006909          423 ---KLRILDGVDVIHK-FKGLP-------K--SGSQMSASFTTTGKHIISIGD-DCRVYVWN  470 (626)
Q Consensus       423 ---~i~iwd~~~~~~~-~~~~~-------~--~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd  470 (626)
                         -|++++....... +..+.       +  ...-....|+|||++|+-.|+ .|...||-
T Consensus       318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence               3455665532221 11110       0  112245789999999876664 56555553

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.89  E-value=8.4  Score=43.25  Aligned_cols=158  Identities=11%  Similarity=0.070  Sum_probs=89.8

Q ss_pred             CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909          308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  387 (626)
Q Consensus       308 ~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~  387 (626)
                      ......+..+-..++.|+-... ..||+++-. +....+... ..++....+.+...+++++.++.+...++....+...
T Consensus       448 ~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~  524 (1096)
T KOG1897|consen  448 STDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREV  524 (1096)
T ss_pred             cccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccceeee
Confidence            3344445555445555554443 457887754 333333333 3344444445555788887777777777765552111


Q ss_pred             EEeeccccccCCCCeEEEEEcCC--CCc---EEEEEeCCCcEEEEeC-Ccceee----eeecCCCCCeEEEEEcCCCCEE
Q 006909          388 KVDFHDRKKTSGNKITGIQFSRD--ESQ---RIMITSEDSKLRILDG-VDVIHK----FKGLPKSGSQMSASFTTTGKHI  457 (626)
Q Consensus       388 ~~~~~~~~~~~~~~i~~l~~s~~--~~~---~l~~~s~dg~i~iwd~-~~~~~~----~~~~~~~~~v~~~~~sp~g~~l  457 (626)
                       .     .......|.|+.++|-  +++   ++++|..+..+.+.-. .+....    +.+..-...|.-..|-.|..+|
T Consensus       525 -~-----~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yL  598 (1096)
T KOG1897|consen  525 -S-----HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYL  598 (1096)
T ss_pred             -e-----eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEE
Confidence             1     1112367999999875  333   7888888776665432 111111    1111123345555666678999


Q ss_pred             EEEeCCccEEEEECCCC
Q 006909          458 ISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       458 ~s~s~dg~I~iwd~~~~  474 (626)
                      .++..||.+.-|.++..
T Consensus       599 lvalgdG~l~~fv~d~~  615 (1096)
T KOG1897|consen  599 LVALGDGALLYFVLDIN  615 (1096)
T ss_pred             EEEcCCceEEEEEEEcc
Confidence            99999999877766544

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.72  E-value=0.13  Score=47.12  Aligned_cols=58  Identities=17%  Similarity=0.199  Sum_probs=41.2

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeec-CC-CCeEEEEEeeCCCCEEEEE--eCCCcEEEEeCC
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFD-HH-NYVTCVQFNPIDDNYFISG--SIDGKVRIWGVC  339 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~-~~-~~v~~~~~~p~~~~~l~s~--s~dg~v~iwd~~  339 (626)
                      +..+++.|+.|+.|++.-++.+.... |. .++.....+. .+..++++  |.|..++.|++.
T Consensus       116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence            78899999999999999888777665 44 3455555444 55566666  666677777664

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.64  E-value=8.7  Score=43.38  Aligned_cols=109  Identities=12%  Similarity=0.121  Sum_probs=72.5

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCe---------EEEEEee---------------CCCCEEEEEeCCCcEE
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYV---------TCVQFNP---------------IDDNYFISGSIDGKVR  334 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v---------~~~~~~p---------------~~~~~l~s~s~dg~v~  334 (626)
                      ++.|+.++.++.|.-.|..+|+.+..+.....+         ..+.+..               ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            568888888899999999999998887533321         2233321               1345788889999999


Q ss_pred             EEeCCCCeEEEeccCCCCeE-------------EEEEee--CCCEEEEEec----------CCcEEEEEcCCCceeee
Q 006909          335 IWGVCEKRVVDWADVRDVIS-------------AICYIP--DGKGFIVGSI----------TGTCHFYKASGNDLKLE  387 (626)
Q Consensus       335 iwd~~~~~~~~~~~~~~~i~-------------~i~~sp--~g~~l~~g~~----------dg~i~i~d~~~~~~~~~  387 (626)
                      -.|.++++.+-.....+.+.             .+.-.|  .+..+++|+.          +|.|+-||..+++....
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            99999988775433322221             111112  2346666643          68899999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.57  E-value=5.4  Score=39.65  Aligned_cols=145  Identities=12%  Similarity=0.072  Sum_probs=83.0

Q ss_pred             CeEEEEeCCCcEEEeccC-CCeeeEe----ec-CCCCeE-EEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccC---
Q 006909          280 NYLLSCSMDKTVRMWQVG-CNQCLNV----FD-HHNYVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV---  349 (626)
Q Consensus       280 ~~l~s~s~d~~v~iwd~~-~~~~~~~----~~-~~~~v~-~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---  349 (626)
                      ..+.+-|.||.+.-..+. .|+....    |. ...++. .-++.. .+..++..+.+|.|+-.|+...........   
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~  226 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL  226 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence            357777788888877775 4444322    11 122222 334444 556666678899999999877653321100   


Q ss_pred             ----------CCCeEEEEEeeCCCEEEEEec--------CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          350 ----------RDVISAICYIPDGKGFIVGSI--------TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       350 ----------~~~i~~i~~sp~g~~l~~g~~--------dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                                .+.-.-+++++..+.|++.-.        ++  .|-+||+.+.+... .+.+.       .++.+|+.+.
T Consensus       227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~-Ri~l~-------~~~~Si~Vsq  298 (342)
T PF06433_consen  227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA-RIPLE-------HPIDSIAVSQ  298 (342)
T ss_dssp             -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE-EEEEE-------EEESEEEEES
T ss_pred             CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE-EEeCC-------CccceEEEcc
Confidence                      123445777776666665322        22  46666777766533 33333       3577999999


Q ss_pred             CCCcEEEEE-eCCCcEEEEeCCcce
Q 006909          410 DESQRIMIT-SEDSKLRILDGVDVI  433 (626)
Q Consensus       410 ~~~~~l~~~-s~dg~i~iwd~~~~~  433 (626)
                      +..-+|++. ..++.+.+||..+..
T Consensus       299 d~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  299 DDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             SSS-EEEEEETTTTEEEEEETTT--
T ss_pred             CCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            875566655 457999999987543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.56  E-value=0.49  Score=53.14  Aligned_cols=138  Identities=14%  Similarity=0.133  Sum_probs=88.8

Q ss_pred             ceEEEEEcCCC---eEEEEeCCCcEEEeccCCCeee--------Ee----ecCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          270 DVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCL--------NV----FDHHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       270 ~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~~--------~~----~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                      .|..+...+|.   .++..+.+-.|..||+++-...        +.    +.......++.|+|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            44455555554   3344445557888998643221        11    123445678899995556677778899999


Q ss_pred             EEeCCCC-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          335 IWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       335 iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      +.-+... ..+.........++++|+|.|+.+++|...|++.-|....... .   ..+.........|.+++|-...
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-~---~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-S---EIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee-e---cccCCCcCCCcceeEEEEecce
Confidence            8876542 2333346677899999999999999999999999987654311 1   1111111114789999998763

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.50  E-value=5.5  Score=39.38  Aligned_cols=156  Identities=14%  Similarity=0.195  Sum_probs=77.3

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909          307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  385 (626)
Q Consensus       307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~  385 (626)
                      ....+..+.-++ ++.++++++....+.-||--... ..........|.+|.|.|++...+++ ..|.|++=+.......
T Consensus       143 ~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  143 TSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             ----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            456788888888 99988888765555677754322 22334456889999999998765544 8888888772221111


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE-EeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          386 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI-LDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       386 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i-wd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                      .... .. ........+..++|.+++ ...++| ..|.+.+ -|.. +-.+.-....-...+..+.|.+..+-++. +.+
T Consensus       221 w~~~-~~-~~~~~~~~~ld~a~~~~~-~~wa~g-g~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~  295 (302)
T PF14870_consen  221 WSEP-II-PIKTNGYGILDLAYRPPN-EIWAVG-GSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQD  295 (302)
T ss_dssp             E----B--TTSS--S-EEEEEESSSS--EEEEE-STT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--ST
T ss_pred             cccc-cC-CcccCceeeEEEEecCCC-CEEEEe-CCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCC
Confidence            1110 01 011223458999999885 455544 4554443 2322 22222222234567888888765555554 468


Q ss_pred             ccEEEE
Q 006909          464 CRVYVW  469 (626)
Q Consensus       464 g~I~iw  469 (626)
                      |.|.-|
T Consensus       296 G~ll~~  301 (302)
T PF14870_consen  296 GVLLRY  301 (302)
T ss_dssp             TEEEEE
T ss_pred             cEEEEe
Confidence            877655

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.44  E-value=4.8  Score=38.52  Aligned_cols=186  Identities=8%  Similarity=0.075  Sum_probs=104.5

Q ss_pred             cceEEEEEcCCC-eEEEEeCCC--cEEEeccCCCeeeEeecCCC--CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909          269 GDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  343 (626)
Q Consensus       269 ~~V~~l~~s~~~-~l~s~s~d~--~v~iwd~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~  343 (626)
                      .-...+.|.+++ ++-+.+.-|  .|+.+|+.+++.........  .-..++..  ++.++...=.++...+||..+-+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence            455678886667 455666655  69999999999887765333  33455554  444555555678999999998777


Q ss_pred             EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909          344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK  423 (626)
Q Consensus       344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~  423 (626)
                      +........-..++  .+|+.|+.+.....++++|..+.+.... +..... ...-..++-+.|.. | ...|-.=....
T Consensus       123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~-i~V~~~-g~pv~~LNELE~i~-G-~IyANVW~td~  196 (264)
T PF05096_consen  123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT-IQVTDN-GRPVSNLNELEYIN-G-KIYANVWQTDR  196 (264)
T ss_dssp             EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE-EE-EET-TEE---EEEEEEET-T-EEEEEETTSSE
T ss_pred             EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEE-EEEEEC-CEECCCcEeEEEEc-C-EEEEEeCCCCe
Confidence            76555555555666  6788899988889999999877654332 222211 11123445555552 2 33333334444


Q ss_pred             EEEEeCCcce-----------eeeee----cCCCCCeEEEEEcCCCCEEEEEeC
Q 006909          424 LRILDGVDVI-----------HKFKG----LPKSGSQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       424 i~iwd~~~~~-----------~~~~~----~~~~~~v~~~~~sp~g~~l~s~s~  462 (626)
                      |...|..+..           .....    .....-.+.+++.|..+.+...+.
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            4445533221           11100    112456799999987766655543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.43  E-value=2.6  Score=44.39  Aligned_cols=114  Identities=18%  Similarity=0.266  Sum_probs=75.8

Q ss_pred             cCccceEEEEEcCC----C-eEEEEeCCCcEEEeccC-----CCeeeEee--cC--CC--CeEEEEEeeCCCCEEEEEeC
Q 006909          266 GHKGDVLDLAWSNS----N-YLLSCSMDKTVRMWQVG-----CNQCLNVF--DH--HN--YVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       266 ~h~~~V~~l~~s~~----~-~l~s~s~d~~v~iwd~~-----~~~~~~~~--~~--~~--~v~~~~~~p~~~~~l~s~s~  329 (626)
                      |.-..|..+.|.|-    - .|++....+.|.||.+.     .++.+...  ..  .-  -...+.|+| ....|++-..
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~  132 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA  132 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence            45567999999974    2 67788888999999874     22222211  12  22  234678999 7777776665


Q ss_pred             CCcEEEEeCC--CCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcC
Q 006909          330 DGKVRIWGVC--EKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKAS  380 (626)
Q Consensus       330 dg~v~iwd~~--~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~  380 (626)
                      ...-.+++++  +.++..-....+.|.|.||.+||++|+++-.. =.-++||-.
T Consensus       133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            5444556654  34454555778889999999999998886544 245677654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.41  E-value=5.1  Score=38.69  Aligned_cols=147  Identities=16%  Similarity=0.150  Sum_probs=84.4

Q ss_pred             ceEEEEEcCCC-eEEEEe---CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe-CCCCe--
Q 006909          270 DVLDLAWSNSN-YLLSCS---MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG-VCEKR--  342 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s---~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd-~~~~~--  342 (626)
                      .+...++++++ .++...   ....+.++..  +...........+..-.|++ ++...+....+...+++. ...+.  
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence            68889999988 444433   2334555544  33333332334778889999 777777766666666663 23322  


Q ss_pred             EEE--eccCCCCeEEEEEeeCCCEEEEEe---cCCcEEEEEcCCCcee--eeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          343 VVD--WADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       343 ~~~--~~~~~~~i~~i~~sp~g~~l~~g~---~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      ...  .......|+++.++|||..++.-.   .++.+.+--+......  ................++.+.|.+++ .++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~  180 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLV  180 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEE
Confidence            222  222223899999999999988766   3467776655322111  11111111111224689999999997 455


Q ss_pred             EEEeC
Q 006909          416 MITSE  420 (626)
Q Consensus       416 ~~~s~  420 (626)
                      +.+..
T Consensus       181 V~~~~  185 (253)
T PF10647_consen  181 VLGRS  185 (253)
T ss_pred             EEeCC
Confidence            54443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.22  E-value=4.8  Score=44.00  Aligned_cols=183  Identities=14%  Similarity=0.141  Sum_probs=98.9

Q ss_pred             eEEEEeCC------CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCeEEEe
Q 006909          281 YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDW  346 (626)
Q Consensus       281 ~l~s~s~d------~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d------g~v~iwd~~~~~~~~~  346 (626)
                      .++.|+.+      ..+..+|..++.......  ......+++..  ++...++|+.|      .++..||.+.++=...
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            55566665      368888988775544332  33344555555  57888999988      3578888887763332


Q ss_pred             ccCCCCeEEEEE-eeCCCEEEEEecCC-----cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909          347 ADVRDVISAICY-IPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  420 (626)
Q Consensus       347 ~~~~~~i~~i~~-sp~g~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~  420 (626)
                      ......=..... .-+|...++|+.||     ++..||..+.+....... .       ....+.....-++.+.++|+.
T Consensus       365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m-~-------~~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM-L-------TRRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCC-C-------cceeeeEEEEECCEEEEEcCc
Confidence            222221111111 23688888999887     477788777665332100 0       111222221112367777775


Q ss_pred             CC------cEEEEeCCcceeeeeec-CCCCCeEEEEEcCCCCEEEEEeCCc-----cEEEEECCCC
Q 006909          421 DS------KLRILDGVDVIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL  474 (626)
Q Consensus       421 dg------~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg-----~I~iwd~~~~  474 (626)
                      ++      ++..||..+..-..... .....-..++. -++...+.||.|+     +|..||..+.
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCC
Confidence            54      56677755332222111 01111111222 3577777787765     3677887765

>PHA03098 kelch-like protein; Provisional

Probab=94.20  E-value=2.6  Score=45.94  Aligned_cols=102  Identities=14%  Similarity=0.186  Sum_probs=54.8

Q ss_pred             CCeEEEEeCCC------cEEEeccCCCeeeEeecCC---CCeEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q 006909          279 SNYLLSCSMDK------TVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVV  344 (626)
Q Consensus       279 ~~~l~s~s~d~------~v~iwd~~~~~~~~~~~~~---~~v~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~~~~  344 (626)
                      +..++.|+.++      .+..||..+++....-...   .....+.+   ++.+++.|+.+     ..+..||..+++-.
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            33556665442      5778888777654332211   11222222   67788888865     34778888776543


Q ss_pred             EeccCCCC--eEEEEEeeCCCEEEEEecC------CcEEEEEcCCCce
Q 006909          345 DWADVRDV--ISAICYIPDGKGFIVGSIT------GTCHFYKASGNDL  384 (626)
Q Consensus       345 ~~~~~~~~--i~~i~~sp~g~~l~~g~~d------g~i~i~d~~~~~~  384 (626)
                      .......+  -.++ ..-+++..+.|+.+      ..+..||..+...
T Consensus       372 ~~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        372 EEPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             eCCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            32221111  1122 22356677777632      3578888876654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.07  E-value=0.31  Score=54.39  Aligned_cols=99  Identities=9%  Similarity=0.136  Sum_probs=69.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeE--EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc
Q 006909          320 DDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  397 (626)
Q Consensus       320 ~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  397 (626)
                      .+..++.|+..|.|-..|+.+.-.  ..-....++|++++|+.+|+.++.|-.+|.|.+||...++... .+..++.   
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~-~i~e~~a---  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK-VITEHGA---  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee-eeeecCC---
Confidence            455688888889999999876422  3334557899999999999999999999999999998866532 2333321   


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSK  423 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~  423 (626)
                      +...|..+.+..++ ..++++...|.
T Consensus       174 p~t~vi~v~~t~~n-S~llt~D~~Gs  198 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQN-SKLLTSDTGGS  198 (1206)
T ss_pred             ccceEEEEEEeCCC-cEEEEccCCCc
Confidence            12334444455555 46778777776

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.06  E-value=2.4  Score=35.72  Aligned_cols=102  Identities=11%  Similarity=0.134  Sum_probs=71.2

Q ss_pred             eEEEEeCCCcEEEeccCC--------CeeeEeecCCCCeEEEEEeeC----CCCEEEEEeCCCcEEEEeCCCCeEEEecc
Q 006909          281 YLLSCSMDKTVRMWQVGC--------NQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRIWGVCEKRVVDWAD  348 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~--------~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  348 (626)
                      .|+.++.-+.|.|++...        ...+..+.....|++++-.+.    ....|+.|+. ..+..||+....-+....
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke   90 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKE   90 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhh
Confidence            678888889999998753        335566677888998876553    3456777764 679999999888777788


Q ss_pred             CCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcCCCc
Q 006909          349 VRDVISAICYIPD---GKGFIVGSITGTCHFYKASGND  383 (626)
Q Consensus       349 ~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~~~~  383 (626)
                      ..+.++++.+-.-   ..-++..+.+..|.-||..+.+
T Consensus        91 ~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   91 VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            8888888887432   2234444445566666665544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.05  E-value=11  Score=40.94  Aligned_cols=54  Identities=9%  Similarity=-0.028  Sum_probs=34.7

Q ss_pred             cEEEEeCCCCeEEE---eccCC-------CCeEEEEEeeCCC---EEEEEecCCcEEEEEcCCCcee
Q 006909          332 KVRIWGVCEKRVVD---WADVR-------DVISAICYIPDGK---GFIVGSITGTCHFYKASGNDLK  385 (626)
Q Consensus       332 ~v~iwd~~~~~~~~---~~~~~-------~~i~~i~~sp~g~---~l~~g~~dg~i~i~d~~~~~~~  385 (626)
                      .|.-.|++++++.=   ...|.       ....-+.+..+|+   .++.+..+|.+++.|..+++..
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            56667888887652   11221       1122233334676   7788999999999999988764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.96  E-value=4.5  Score=42.72  Aligned_cols=152  Identities=13%  Similarity=0.273  Sum_probs=91.8

Q ss_pred             CccceEEEEEcCCC-eEEEEe--CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeC---CCCEEEEEeCCCcEEEEeCCC
Q 006909          267 HKGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGSIDGKVRIWGVCE  340 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~s~dg~v~iwd~~~  340 (626)
                      --.+|..++|.... .+++.=  .+|.+++=|   ...+..|   ..|..+.|.|.   +...++.......|.+|.+.-
T Consensus        18 AiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   18 AIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             hhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            34578899998655 444432  233333222   2233333   45889999983   122344455678899998752


Q ss_pred             -----CeEE-E-eccCCC----CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          341 -----KRVV-D-WADVRD----VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       341 -----~~~~-~-~~~~~~----~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                           ++.. . .-....    -...+.|+|....|++-+....-.++++........ .....     .+.|.|.+|.+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk-aDi~~-----~G~IhCACWT~  165 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK-ADIKT-----SGLIHCACWTK  165 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEE-EeccC-----CceEEEEEecC
Confidence                 2211 1 111111    234678999998888887777767777765544332 22222     37899999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCC
Q 006909          410 DESQRIMITSEDSKLRILDGV  430 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~  430 (626)
                      ||.+++++.+..=.-+|||-.
T Consensus       166 DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  166 DGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cCCEEEEEeCCeEEEEEecCc
Confidence            996666666666677899843

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.91  E-value=11  Score=40.75  Aligned_cols=193  Identities=15%  Similarity=0.138  Sum_probs=109.6

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCC--eE----------EEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--VT----------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  346 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--v~----------~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~  346 (626)
                      ++.++.++.++.|.-.|..+|+.+..+.....  +.          .+++   .+..++.++.|+.|.-.|..+++++-.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence            56788888888999999999999887753221  11          1222   235677788899999999999887643


Q ss_pred             ccCCC-----CeEEEEEeeCCCEEEEEec------CCcEEEEEcCCCceeeeEEeecccc--------------------
Q 006909          347 ADVRD-----VISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRK--------------------  395 (626)
Q Consensus       347 ~~~~~-----~i~~i~~sp~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~--------------------  395 (626)
                      .....     .+++--.-.++ .++++..      +|.|..+|..+++............                    
T Consensus       146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            22211     11111011134 5555543      6899999999887655422211100                    


Q ss_pred             -----ccCCCCeEEEEEcCCCCcEEEEEeCC-----C-----------cEEEEeCCccee--eeeecCCCC-------Ce
Q 006909          396 -----KTSGNKITGIQFSRDESQRIMITSED-----S-----------KLRILDGVDVIH--KFKGLPKSG-------SQ  445 (626)
Q Consensus       396 -----~~~~~~i~~l~~s~~~~~~l~~~s~d-----g-----------~i~iwd~~~~~~--~~~~~~~~~-------~v  445 (626)
                           ......-..+.+.|.. .++..+..+     +           .|.-.|..+...  .++...|..       ..
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             CCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence                 0001111234566653 355554422     1           344455554333  333333321       12


Q ss_pred             EEEEEcCCCC---EEEEEeCCccEEEEECCCCCC
Q 006909          446 MSASFTTTGK---HIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       446 ~~~~~sp~g~---~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      .-+....+|+   .++.+..+|.+++.|..++..
T Consensus       304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            2233335676   788999999999999998843

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.89  E-value=8.1  Score=39.05  Aligned_cols=68  Identities=18%  Similarity=0.146  Sum_probs=40.0

Q ss_pred             CCeEEEEEcCCC------CcEEEEEeCCCcEEEEeCCcc---eeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909          400 NKITGIQFSRDE------SQRIMITSEDSKLRILDGVDV---IHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVY  467 (626)
Q Consensus       400 ~~i~~l~~s~~~------~~~l~~~s~dg~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~  467 (626)
                      ..++.+.|....      ..++++.-..+.|....+...   ...... ......+..+++.|||.+.++...+|.|+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            567777776432      135555555667777765422   111111 22334789999999999999888888876

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.81  E-value=7.6  Score=38.41  Aligned_cols=189  Identities=10%  Similarity=0.044  Sum_probs=89.5

Q ss_pred             ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec----CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE--
Q 006909          270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--  343 (626)
Q Consensus       270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~--  343 (626)
                      ...+|.|..+..+++| ..+ +.+.-.+.|+.-..+.    .......+.... ++ ....++..|.|+.- ...++.  
T Consensus        63 ~l~~I~f~~~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T-~DgG~tW~  137 (302)
T PF14870_consen   63 HLNSISFDGNEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRT-TDGGKTWQ  137 (302)
T ss_dssp             EEEEEEEETTEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEE-SSTTSSEE
T ss_pred             eEEEEEecCCceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEe-CCCCCCee
Confidence            3566777654444444 444 3333334444433332    223334444443 33 33334445654432 223321  


Q ss_pred             EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909          344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK  423 (626)
Q Consensus       344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~  423 (626)
                      .........+..+.-+++|++++++.......-||--.......       .+....+|..|.|.|++ .+.+ ....|.
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-------~r~~~~riq~~gf~~~~-~lw~-~~~Gg~  208 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-------NRNSSRRIQSMGFSPDG-NLWM-LARGGQ  208 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-------E--SSS-EEEEEE-TTS--EEE-EETTTE
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-------ccCccceehhceecCCC-CEEE-EeCCcE
Confidence            22344557788888999999998887666666776543222211       12224789999999997 4444 448899


Q ss_pred             EEEEeCCcceeeeee-----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          424 LRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       424 i~iwd~~~~~~~~~~-----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |+.=+.......+..     ....-.+..++|.+++...++|+ .|.++ ...+.+
T Consensus       209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgG  262 (302)
T PF14870_consen  209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGG  262 (302)
T ss_dssp             EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTT
T ss_pred             EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCC
Confidence            988873222222211     12333478999999888877776 44443 344444

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.76  E-value=6.9  Score=37.79  Aligned_cols=157  Identities=13%  Similarity=0.109  Sum_probs=91.2

Q ss_pred             CeEEEEEeeCCCCEEEEEe---CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEE-cCCCcee
Q 006909          310 YVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK-ASGNDLK  385 (626)
Q Consensus       310 ~v~~~~~~p~~~~~l~s~s---~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d-~~~~~~~  385 (626)
                      .+...++++ ++..++...   ....++++..........  ....+...+|++++...++...+...+++. .......
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999 888776655   233455555433222222  334788889999987777767666666664 2333322


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEeCC---cc-eee----eee-cCCCCCeEEEEEcCCC
Q 006909          386 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGV---DV-IHK----FKG-LPKSGSQMSASFTTTG  454 (626)
Q Consensus       386 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s--~dg~i~iwd~~---~~-~~~----~~~-~~~~~~v~~~~~sp~g  454 (626)
                      .........    ...|+.+.+||||.+..++..  .++.|.+--+.   .. ...    ... ......+..++|.+++
T Consensus       102 ~~~v~~~~~----~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  102 PVEVDWPGL----RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             eEEeccccc----CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence            222222221    128999999999954444442  34666665321   11 111    111 1234678999999999


Q ss_pred             CEEEEEeCCcc-EEE-EECCC
Q 006909          455 KHIISIGDDCR-VYV-WNYDE  473 (626)
Q Consensus       455 ~~l~s~s~dg~-I~i-wd~~~  473 (626)
                      .+++.+...+. +.. .....
T Consensus       178 ~L~V~~~~~~~~~~~~v~~dG  198 (253)
T PF10647_consen  178 TLVVLGRSAGGPVVRLVSVDG  198 (253)
T ss_pred             EEEEEeCCCCCceeEEEEccC
Confidence            88877765433 433 44444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.61  E-value=0.028  Score=60.84  Aligned_cols=118  Identities=10%  Similarity=0.118  Sum_probs=64.3

Q ss_pred             cCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCC--CceeeeEEeeccccccCCCCeEEEEEcC---CCCcEEEEEeCC
Q 006909          348 DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSR---DESQRIMITSED  421 (626)
Q Consensus       348 ~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~---~~~~~l~~~s~d  421 (626)
                      +..+.+-.+.|-. +...+.  -.-|.+.+|++.-  ++... .+..+. ....+..+.-+.|.|   +. .++..+-.+
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~-~l~v~~-~~p~gs~~~~V~wcp~~~~~-~~ic~~~~~  204 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQP-QLEVTP-ITPYGSDPQLVSWCPIAVNK-VYICYGLKG  204 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhcccccc-ceEEee-cCcCCCCcceeeeccccccc-ceeeeccCC
Confidence            4445555555532 111111  2336778888753  22211 111111 111123344555554   43 567777788


Q ss_pred             CcEEEEeCCcc-eeeeeecCCCCCeEEE-----------EEcCCCCEEEEEeCCccEEEEECC
Q 006909          422 SKLRILDGVDV-IHKFKGLPKSGSQMSA-----------SFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       422 g~i~iwd~~~~-~~~~~~~~~~~~v~~~-----------~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      +.|++....+. ...+..  |..+++.+           ..||||+.++.++.||.+++|.+.
T Consensus       205 ~~i~lL~~~ra~~~l~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  205 GEIRLLNINRALRSLFRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             CceeEeeechHHHHHHHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            89988775532 233333  44444433           368999999999999999998764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.51  E-value=3  Score=45.33  Aligned_cols=112  Identities=14%  Similarity=0.240  Sum_probs=71.7

Q ss_pred             CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec--cCCCCeEEEEEe--eCCCEEEEEecCCcEEEEEcC-----
Q 006909          310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYI--PDGKGFIVGSITGTCHFYKAS-----  380 (626)
Q Consensus       310 ~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~s--p~g~~l~~g~~dg~i~i~d~~-----  380 (626)
                      .+.-+.-+. -++..++-+....+.|||.+.+.+....  ...+.|..+.|.  |+|+.+++.+....|.+|.-.     
T Consensus        31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            334444443 4444444444567999999998865533  447889999986  588888888889999888642     


Q ss_pred             CCce---eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909          381 GNDL---KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  428 (626)
Q Consensus       381 ~~~~---~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd  428 (626)
                      +...   ....+....   ....+|.+..|.++|  .+++|+ ++.+.|+|
T Consensus       110 ~~~p~w~~i~~i~i~~---~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~d  154 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISS---HTPHPIGDSIWLKDG--TLVVGS-GNQLFVFD  154 (631)
T ss_pred             cCCcccceeEEEEeec---CCCCCccceeEecCC--eEEEEe-CCEEEEEC
Confidence            1111   122222221   123678999999998  444444 56788887

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.50  E-value=5.3  Score=36.79  Aligned_cols=144  Identities=10%  Similarity=0.053  Sum_probs=79.5

Q ss_pred             CEEEEEeCCCcEEEEeCCC--CeEEEeccCCCCeEEEEEeeCCCEEEEEecC---C---cEEEEE-cCCC---ceeeeEE
Q 006909          322 NYFISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSIT---G---TCHFYK-ASGN---DLKLEKV  389 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~~--~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d---g---~i~i~d-~~~~---~~~~~~~  389 (626)
                      +.|+.+...+.|.+|++.+  .++......-+.|..+.++..|+++++--.+   .   .+|+|- .+..   ..+.. .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~-v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR-V  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE-E
Confidence            5555556678899999883  4455555666889999999999999995332   2   556652 1111   11111 0


Q ss_pred             eecccc-----------------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-----ee-ee------cC
Q 006909          390 DFHDRK-----------------KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KF-KG------LP  440 (626)
Q Consensus       390 ~~~~~~-----------------~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-----~~-~~------~~  440 (626)
                      .+-++.                 .....++.+++..|-.+ -|++|+ ++++.+|.+.....     .+ ..      +.
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~  185 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI  185 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence            111100                 00124677788887654 345544 46788887542221     01 10      11


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          441 KSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       441 ~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      ..-.+..+++.  +.|+|..+ +-.+++..+
T Consensus       186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             cCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence            12224455554  67888776 556777665

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.43  E-value=8.6  Score=37.89  Aligned_cols=166  Identities=11%  Similarity=0.152  Sum_probs=94.3

Q ss_pred             cEEEeccCCCeeeEeec-------CCCCeEEEEEeeCCC----CEEEEE-eCCCcEEEEeCCCCeEEEeccC--------
Q 006909          290 TVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDD----NYFISG-SIDGKVRIWGVCEKRVVDWADV--------  349 (626)
Q Consensus       290 ~v~iwd~~~~~~~~~~~-------~~~~v~~~~~~p~~~----~~l~s~-s~dg~v~iwd~~~~~~~~~~~~--------  349 (626)
                      .|.+||+.+++.++.+.       ..+.+..+.+...++    .+++.+ +..+-|.++|+.+++..+...+        
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            68899999999988874       345678888876332    233333 3345799999999876553322        


Q ss_pred             ------------CCCeEEEEEee---CCCEEEEEecCCcEEEEEcCCC-----ceee-----eEEeeccccccCCCCeEE
Q 006909          350 ------------RDVISAICYIP---DGKGFIVGSITGTCHFYKASGN-----DLKL-----EKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       350 ------------~~~i~~i~~sp---~g~~l~~g~~dg~i~i~d~~~~-----~~~~-----~~~~~~~~~~~~~~~i~~  404 (626)
                                  ...+..++.+|   +|+.|+-+...+. ++|.+.+.     ....     ..+...+.   .......
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g  190 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG  190 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence                        12355566655   5556665554432 23333211     1100     00111111   1135667


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEeCCc-----ceeeeeecCC-CCCeEEEEEcC--CCCEEEEE
Q 006909          405 IQFSRDESQRIMITSEDSKLRILDGVD-----VIHKFKGLPK-SGSQMSASFTT--TGKHIISI  460 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~-~~~v~~~~~sp--~g~~l~s~  460 (626)
                      +++.++| .++++--..+.|..|+...     ....+..... -..+.++.+.+  +|.+.+..
T Consensus       191 ~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  191 MAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             EEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            8889987 7888888899999999775     3333333222 45778888888  66655554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.36  E-value=2  Score=43.96  Aligned_cols=133  Identities=17%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             CCCcEEEeccCCCeeeEeecCC---CCeEEEEEeeC-CCCE-EEEEeCCCcEEEEeC-CCCe-----EEEecc-------
Q 006909          287 MDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPI-DDNY-FISGSIDGKVRIWGV-CEKR-----VVDWAD-------  348 (626)
Q Consensus       287 ~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~~p~-~~~~-l~s~s~dg~v~iwd~-~~~~-----~~~~~~-------  348 (626)
                      ...++.+||+.+.+.++++...   ..+..+.|... +..+ |+.+....+|..|-- ..++     ++.+..       
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            3467999999999999999744   24567777541 2233 444444555555533 3322     222211       


Q ss_pred             ---C-------CCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeee--EEeeccccc----------cCCCCeEEE
Q 006909          349 ---V-------RDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE--KVDFHDRKK----------TSGNKITGI  405 (626)
Q Consensus       349 ---~-------~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~--~~~~~~~~~----------~~~~~i~~l  405 (626)
                         .       ..-|+.|.+|.|.++|.+++ ..|.++.||+.....+..  ++.+-+...          .-.+...-+
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv  379 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV  379 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence               1       34589999999999998876 479999999987655433  222222110          011234567


Q ss_pred             EEcCCCCcEEEEEe
Q 006909          406 QFSRDESQRIMITS  419 (626)
Q Consensus       406 ~~s~~~~~~l~~~s  419 (626)
                      +.|.||.++.+|.|
T Consensus       380 qlS~DGkRlYvTnS  393 (461)
T PF05694_consen  380 QLSLDGKRLYVTNS  393 (461)
T ss_dssp             EE-TTSSEEEEE--
T ss_pred             EEccCCeEEEEEee
Confidence            78888754444443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.09  E-value=3.1  Score=45.23  Aligned_cols=112  Identities=14%  Similarity=0.163  Sum_probs=73.9

Q ss_pred             CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc--CCCCcEEEEEeCCCcEEEEeC
Q 006909          352 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       352 ~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~~~~~l~~~s~dg~i~iwd~  429 (626)
                      .++-+.-+.-++..++-+....+.|||.+......+.. +.     ..+.|..+.|.  |+| +.+++.+..+.|.+|--
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~-f~-----~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES-FS-----EDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee-ec-----CCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence            34444445555555555556689999999887555422 11     23789999985  676 68888888899999852


Q ss_pred             C-----------cceeeeeecCCC-CCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          430 V-----------DVIHKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       430 ~-----------~~~~~~~~~~~~-~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      .           ..+..+....+. .+|.+..|.++|.+++.+  ++.++|++-.
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence            1           123333333233 678899999999877665  4578888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.09  E-value=6.1  Score=43.48  Aligned_cols=110  Identities=12%  Similarity=0.155  Sum_probs=74.9

Q ss_pred             cceEEEEEcC---CCeEEEEeCCCcEEEeccCC-------C-------------eeeEeecCCCCeEEEEEe--eCCCCE
Q 006909          269 GDVLDLAWSN---SNYLLSCSMDKTVRMWQVGC-------N-------------QCLNVFDHHNYVTCVQFN--PIDDNY  323 (626)
Q Consensus       269 ~~V~~l~~s~---~~~l~s~s~d~~v~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--p~~~~~  323 (626)
                      ..|+.|....   ...|+.|..||.|.+|.+++       .             ++...+.....+++++++  . ..++
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rl  179 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRL  179 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceE
Confidence            3466665542   34899999999999996521       1             011223456688999998  6 6778


Q ss_pred             EEEEeCCCcEEEEeCCC--CeEEE--eccCCCCeEEEEEeeCC---C---EEEEEecCCcEEEEEc
Q 006909          324 FISGSIDGKVRIWGVCE--KRVVD--WADVRDVISAICYIPDG---K---GFIVGSITGTCHFYKA  379 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~--~~~~~--~~~~~~~i~~i~~sp~g---~---~l~~g~~dg~i~i~d~  379 (626)
                      ||+++....|.||-...  .+...  ...+...|.+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888875433  22111  23466778999998743   2   7788899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.98  E-value=9.1  Score=36.88  Aligned_cols=192  Identities=13%  Similarity=0.131  Sum_probs=112.0

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  345 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~  345 (626)
                      +-+.++.++. .+...+..+.-++|.|+.+...-...   ...+...++..   .|++...+..|.-+.+.|+.+...-.
T Consensus        87 ~l~~Dv~vse-~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVSE-EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEecc-cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCce
Confidence            4455566654 35566667777999999766544333   33455566666   68999988877778888987543211


Q ss_pred             ---e-ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          346 ---W-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       346 ---~-~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                         . .........++.  .|++..++..|+-+.+.|+.+...+...-....     +..+.++..+++   +....-.+
T Consensus       163 lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~-----g~g~~sv~vsdn---r~y~vvy~  232 (370)
T COG5276         163 LAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT-----GPGTYSVSVSDN---RAYLVVYD  232 (370)
T ss_pred             eeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEec-----CCceEEEEecCC---eeEEEEcc
Confidence               1 111222233443  478888899999999999988765543222221     136777777776   33333334


Q ss_pred             CcEEEEeCCcce--eeeeecCCCCCeEEE-EEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          422 SKLRILDGVDVI--HKFKGLPKSGSQMSA-SFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       422 g~i~iwd~~~~~--~~~~~~~~~~~v~~~-~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      --+.+-|.....  ..+-.. ....+.++ .+.-.+++...+..+.-+-+-|+.+..
T Consensus       233 egvlivd~s~~ssp~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~  288 (370)
T COG5276         233 EGVLIVDVSGPSSPTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP  288 (370)
T ss_pred             cceEEEecCCCCCceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence            456666655433  222222 22222222 233346677777667777777887753

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.94  E-value=0.34  Score=31.72  Aligned_cols=31  Identities=35%  Similarity=0.473  Sum_probs=26.5

Q ss_pred             CcEEEEEEcCCC---CEEEEEeCCCcEEEEEcCC
Q 006909          182 GCIWTLKFSPDG---RYLASGGEDGVVRIWHVTS  212 (626)
Q Consensus       182 ~~V~~l~fspdg---~~Latgs~Dg~i~iwd~~~  212 (626)
                      |+|.+|+|||+.   .+|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            579999999854   4888888889999999984

It contains a characteristic DLL sequence motif.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.89  E-value=8.6  Score=39.87  Aligned_cols=149  Identities=14%  Similarity=0.132  Sum_probs=92.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCe-----EEEeccCCCCeEEEEEee-----CCCEEEEEecCCcEEEEEcCCCc------
Q 006909          320 DDNYFISGSIDGKVRIWGVCEKR-----VVDWADVRDVISAICYIP-----DGKGFIVGSITGTCHFYKASGND------  383 (626)
Q Consensus       320 ~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~~i~~i~~sp-----~g~~l~~g~~dg~i~i~d~~~~~------  383 (626)
                      +...+++||..|.++||+...+.     ++-......+|..+..-+     +...||+ -.-..+.+|.+....      
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            45789999999999999986533     334456677887776533     2234444 556788888873221      


Q ss_pred             --eeeeEEeeccccccCCCCeEEEEEcC----CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEE
Q 006909          384 --LKLEKVDFHDRKKTSGNKITGIQFSR----DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI  457 (626)
Q Consensus       384 --~~~~~~~~~~~~~~~~~~i~~l~~s~----~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  457 (626)
                        .......-|. .   .....+++.-|    .+..++.+-+.||.+.+|+........... .---.--++|.+.-..+
T Consensus       115 ~~~~L~~~yeh~-l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~~llPgPl~Y~~~tDsf  189 (418)
T PF14727_consen  115 NQYQLELIYEHS-L---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-DFLLPGPLCYCPRTDSF  189 (418)
T ss_pred             cEEEEEEEEEEe-c---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-CCCCCcCeEEeecCCEE
Confidence              1111111111 1   12333344333    224688899999999999976544332221 12223346778888899


Q ss_pred             EEEeCCccEEEEECCCC
Q 006909          458 ISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       458 ~s~s~dg~I~iwd~~~~  474 (626)
                      ++++.+..|..|.+...
T Consensus       190 vt~sss~~l~~Yky~~L  206 (418)
T PF14727_consen  190 VTASSSWTLECYKYQDL  206 (418)
T ss_pred             EEecCceeEEEecHHHh
Confidence            99999999999988543

>PRK10115 protease 2; Provisional

Probab=92.88  E-value=19  Score=40.40  Aligned_cols=193  Identities=9%  Similarity=0.073  Sum_probs=89.3

Q ss_pred             EEEEEcCCC--eEEEEeCC-----CcEEEeccCCC--eeeEeecC-CCCeEEEEEeeCCCCEEEEEeC---CCcEEEEeC
Q 006909          272 LDLAWSNSN--YLLSCSMD-----KTVRMWQVGCN--QCLNVFDH-HNYVTCVQFNPIDDNYFISGSI---DGKVRIWGV  338 (626)
Q Consensus       272 ~~l~~s~~~--~l~s~s~d-----~~v~iwd~~~~--~~~~~~~~-~~~v~~~~~~p~~~~~l~s~s~---dg~v~iwd~  338 (626)
                      ..++|.+++  ++++.-.+     ..|..+++.++  +-...+.. .....-..+.+.++.+++..+.   ++.+.+++.
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            458999876  33443322     36788888887  33344432 2223222233326776655443   346888884


Q ss_pred             C--CCeEEEeccCC-CCeEEEEEeeCCCEEEEEecC--CcEEEE--EcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          339 C--EKRVVDWADVR-DVISAICYIPDGKGFIVGSIT--GTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       339 ~--~~~~~~~~~~~-~~i~~i~~sp~g~~l~~g~~d--g~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      .  .+......... .....+. + .+..+..-+..  ...++.  ++.+. .....+..+.    ....|..+.+..+ 
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~----~~~~i~~~~~~~~-  326 (686)
T PRK10115        255 ELADAEPFVFLPRRKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPR----ENIMLEGFTLFTD-  326 (686)
T ss_pred             cCCCCCceEEEECCCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCC----CCCEEEEEEEECC-
Confidence            2  33322222222 2222222 2 23444443332  233333  33321 1111111111    1246888888744 


Q ss_pred             CcEEEEEeCCCcEEEE--eCCc-ceeeeeecCCCCCeEEEEEc--CCCC-EEEEEeC---CccEEEEECCCC
Q 006909          412 SQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFT--TTGK-HIISIGD---DCRVYVWNYDEL  474 (626)
Q Consensus       412 ~~~l~~~s~dg~i~iw--d~~~-~~~~~~~~~~~~~v~~~~~s--p~g~-~l~s~s~---dg~I~iwd~~~~  474 (626)
                       .++++...++.-+++  +... ....+.. .....+..+.++  +++. ++++.+.   -+.++.+|..++
T Consensus       327 -~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        327 -WLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             -EEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence             577777777765554  4322 1222211 112223333344  3433 4444433   378888988765

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.86  E-value=5.1  Score=41.18  Aligned_cols=148  Identities=10%  Similarity=0.100  Sum_probs=76.0

Q ss_pred             CCeEEEEEeeCCCCEEEEEe-----------CCC-cEEEEeCCC--Ce---EEEeccCCCCeEEEEEeeCCCEEEEEecC
Q 006909          309 NYVTCVQFNPIDDNYFISGS-----------IDG-KVRIWGVCE--KR---VVDWADVRDVISAICYIPDGKGFIVGSIT  371 (626)
Q Consensus       309 ~~v~~~~~~p~~~~~l~s~s-----------~dg-~v~iwd~~~--~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~d  371 (626)
                      .....|+|.+ +++++++-.           ..+ .|.+++-..  +.   ...+...-.....+++.++|  |+++...
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            4567888888 888776642           123 676665432  22   12223333456789998988  4455544


Q ss_pred             CcEEEEEcCCCcee---eeEE--eeccccccCCCCeEEEEEcCCCCcEEEEEe-CC------------------CcEEEE
Q 006909          372 GTCHFYKASGNDLK---LEKV--DFHDRKKTSGNKITGIQFSRDESQRIMITS-ED------------------SKLRIL  427 (626)
Q Consensus       372 g~i~i~d~~~~~~~---~~~~--~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s-~d------------------g~i~iw  427 (626)
                      ...++.|.......   .+.+  .+......+......++|.||| .+.++.+ ..                  +.|.-+
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            43334455432111   1111  1111101123457789999998 4444333 11                  334445


Q ss_pred             eCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909          428 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       428 d~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      +........... .-.....++|+|+|+++++-.
T Consensus       170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ecCCCeEEEEec-CcCCCccceECCCCCEEEEcc
Confidence            543222222222 234567899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.82  E-value=2  Score=44.29  Aligned_cols=148  Identities=18%  Similarity=0.175  Sum_probs=88.1

Q ss_pred             CCCEEE-EEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC-------EEEEEecCCcEEEEEcCCCceeeeEEee
Q 006909          320 DDNYFI-SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-------GFIVGSITGTCHFYKASGNDLKLEKVDF  391 (626)
Q Consensus       320 ~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-------~l~~g~~dg~i~i~d~~~~~~~~~~~~~  391 (626)
                      +.++++ .|.....++--|+..|+++..-.....+ -+.|.|..+       .-++|-.+..|.-.|.+-..........
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            444444 3445566777788888887655444444 577777532       2345556666665665433322111111


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          392 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      ..  ........+..-...|  ++++++..|.|++||--.....-....-...|..+..+.+|++|++.+ ...+.+-|+
T Consensus       557 Kd--Y~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~  631 (776)
T COG5167         557 KD--YKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDV  631 (776)
T ss_pred             hh--ccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEec
Confidence            10  0111333444444454  999999999999999433333333333567888899999999988776 456777777


Q ss_pred             CC
Q 006909          472 DE  473 (626)
Q Consensus       472 ~~  473 (626)
                      .-
T Consensus       632 ~i  633 (776)
T COG5167         632 PI  633 (776)
T ss_pred             cc
Confidence            54

>PHA02713 hypothetical protein; Provisional

Probab=92.59  E-value=12  Score=40.89  Aligned_cols=93  Identities=14%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             cEEEeccCCCeeeEeecCCCC--eEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCeEEEeccCCCCe-EEEEEee
Q 006909          290 TVRMWQVGCNQCLNVFDHHNY--VTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWADVRDVI-SAICYIP  360 (626)
Q Consensus       290 ~v~iwd~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~i-~~i~~sp  360 (626)
                      .+..||..+++....-..+.+  -.+++..  ++.+++.|+.+      ..+..||..++.-........+- ......-
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            466788776654332221111  1223332  67777888754      34778898776543332222111 1122234


Q ss_pred             CCCEEEEEecCC-----cEEEEEcCCCce
Q 006909          361 DGKGFIVGSITG-----TCHFYKASGNDL  384 (626)
Q Consensus       361 ~g~~l~~g~~dg-----~i~i~d~~~~~~  384 (626)
                      +|+..++|+.++     .+..||..+...
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            677778888764     478899877654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.54  E-value=15  Score=38.16  Aligned_cols=87  Identities=16%  Similarity=0.194  Sum_probs=53.5

Q ss_pred             EEEcCCC-eEEEEeCCCcEEE---eccC-----CCeeeEee----cCC--CCeEEEEEeeC----------CCCEEEEEe
Q 006909          274 LAWSNSN-YLLSCSMDKTVRM---WQVG-----CNQCLNVF----DHH--NYVTCVQFNPI----------DDNYFISGS  328 (626)
Q Consensus       274 l~~s~~~-~l~s~s~d~~v~i---wd~~-----~~~~~~~~----~~~--~~v~~~~~~p~----------~~~~l~s~s  328 (626)
                      ++.+|++ .|+.+..+..+.+   |+..     .+......    .+.  ..|+++.+-|.          +...++.|.
T Consensus         7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~   86 (415)
T PF14655_consen    7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT   86 (415)
T ss_pred             EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence            4556776 5555555555444   5331     11222111    222  57888887663          356799999


Q ss_pred             CCCcEEEEeCCCCeEEEeccCCCCeEEEEEee
Q 006909          329 IDGKVRIWGVCEKRVVDWADVRDVISAICYIP  360 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp  360 (626)
                      .+|.|++|...+..+....-|..+|..+....
T Consensus        87 ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   87 SSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             cccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence            99999999886655555566777777776643

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.21  E-value=12  Score=36.21  Aligned_cols=160  Identities=14%  Similarity=0.139  Sum_probs=102.3

Q ss_pred             eEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE---EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEE
Q 006909          302 LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYK  378 (626)
Q Consensus       302 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d  378 (626)
                      +..+...+-+..+.++   +++...+..+.-++|.|+.+...-   ......+.  +-.+.-.|++..++..+.-+.++|
T Consensus        80 ~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy--aygv~vsGn~aYVadlddgfLivd  154 (370)
T COG5276          80 LSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY--AYGVYVSGNYAYVADLDDGFLIVD  154 (370)
T ss_pred             EEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCce--EEEEEecCCEEEEeeccCcEEEEE
Confidence            3344456667778884   578888888888999999764322   22222233  334455789999999888889999


Q ss_pred             cCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce-eeeeecCCCC-CeEEEEEcCCCCE
Q 006909          379 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKSG-SQMSASFTTTGKH  456 (626)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~sp~g~~  456 (626)
                      +.+...+.-.-.    .......-..++.|-   ++-..+..|+-+.|.|+.++. .++.++-..+ .+.++..+++..+
T Consensus       155 vsdpssP~lagr----ya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y  227 (370)
T COG5276         155 VSDPSSPQLAGR----YALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY  227 (370)
T ss_pred             CCCCCCceeeee----eccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE
Confidence            988765543211    111223335566664   367778889999999987432 3344433444 6778887777666


Q ss_pred             EEEEeCCccEEEEECCCCC
Q 006909          457 IISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       457 l~s~s~dg~I~iwd~~~~~  475 (626)
                      ++..  +--+.+-|..+..
T Consensus       228 ~vvy--~egvlivd~s~~s  244 (370)
T COG5276         228 LVVY--DEGVLIVDVSGPS  244 (370)
T ss_pred             EEEc--ccceEEEecCCCC
Confidence            6655  3456677777654

>PHA02790 Kelch-like protein; Provisional

Probab=91.39  E-value=14  Score=39.52  Aligned_cols=102  Identities=8%  Similarity=0.074  Sum_probs=55.5

Q ss_pred             eEEEEeCCC-----cEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC--CcEEEEeCCCCeEEEeccCCC
Q 006909          281 YLLSCSMDK-----TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID--GKVRIWGVCEKRVVDWADVRD  351 (626)
Q Consensus       281 ~l~s~s~d~-----~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~  351 (626)
                      .++.|+.++     ++..||..++.....-.  ....-.+++. - ++.+.+.|+.+  ..+..||..+++-........
T Consensus       274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~  351 (480)
T PHA02790        274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK  351 (480)
T ss_pred             EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence            556666542     46678887765443322  1111112222 2 67777888764  357888877665443333222


Q ss_pred             CeE-EEEEeeCCCEEEEEecCC---cEEEEEcCCCce
Q 006909          352 VIS-AICYIPDGKGFIVGSITG---TCHFYKASGNDL  384 (626)
Q Consensus       352 ~i~-~i~~sp~g~~l~~g~~dg---~i~i~d~~~~~~  384 (626)
                      +.. .....-+|+..++|+.++   .+..||..+...
T Consensus       352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            221 122234677777777653   467888776654

>PHA03098 kelch-like protein; Provisional

Probab=91.32  E-value=11  Score=41.07  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=53.9

Q ss_pred             CeEEEEeCC-----CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCeEEEe
Q 006909          280 NYLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDW  346 (626)
Q Consensus       280 ~~l~s~s~d-----~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d------g~v~iwd~~~~~~~~~  346 (626)
                      ..++.|+.+     ..+..||..+++....-.  ....-.+++..  ++.+++.|+.+      ..+..||..+.+-...
T Consensus       344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            355666654     347788887665433222  11111222222  67777777732      3588899877654332


Q ss_pred             ccCCCCe-EEEEEeeCCCEEEEEecCC--------cEEEEEcCCCce
Q 006909          347 ADVRDVI-SAICYIPDGKGFIVGSITG--------TCHFYKASGNDL  384 (626)
Q Consensus       347 ~~~~~~i-~~i~~sp~g~~l~~g~~dg--------~i~i~d~~~~~~  384 (626)
                      .....+. ...+...+++.++.|+.++        .+.+||..+.+.
T Consensus       422 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        422 SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence            2211111 1112234566667776432        378888877654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.27  E-value=4.9  Score=44.90  Aligned_cols=82  Identities=15%  Similarity=0.172  Sum_probs=53.7

Q ss_pred             CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC---------Cce--eeeEEeecc--ccccCCCCeEEEEEcCCC--CcE
Q 006909          350 RDVISAICYIPDGKGFIVGSITGTCHFYKASG---------NDL--KLEKVDFHD--RKKTSGNKITGIQFSRDE--SQR  414 (626)
Q Consensus       350 ~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~---------~~~--~~~~~~~~~--~~~~~~~~i~~l~~s~~~--~~~  414 (626)
                      ...|..|.++|+|++++..+..|.+.+.=.+.         +..  .........  ........|..+.|+|.+  ...
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            34688999999999999988876544432221         111  111111111  112334688999999974  368


Q ss_pred             EEEEeCCCcEEEEeCCc
Q 006909          415 IMITSEDSKLRILDGVD  431 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~  431 (626)
                      |++-..|+++++||+.+
T Consensus       164 l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEEecCCEEEEEecCC
Confidence            99999999999999763

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.17  E-value=16  Score=35.67  Aligned_cols=202  Identities=12%  Similarity=0.132  Sum_probs=109.6

Q ss_pred             ceEEEEEcCCC-eEEEEeCCCcEEEeccC------CCee-eEeec------CCCCeEEEEEeeCCCC------------E
Q 006909          270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQC-LNVFD------HHNYVTCVQFNPIDDN------------Y  323 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~------~~~~-~~~~~------~~~~v~~~~~~p~~~~------------~  323 (626)
                      .-+.|+++|.+ .-++...-+...+||..      ..+. +-++.      .....+.+.|+. ...            .
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence            45788999988 55555666789999986      2222 22222      234678888875 222            3


Q ss_pred             EEEEeCCCcEEEEeCCCCe------EEEecc-CCCC-eEEEEEee--CCCEEEEE-ecCCcEEEEEcCCCceeeeEEeec
Q 006909          324 FISGSIDGKVRIWGVCEKR------VVDWAD-VRDV-ISAICYIP--DGKGFIVG-SITGTCHFYKASGNDLKLEKVDFH  392 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~------~~~~~~-~~~~-i~~i~~sp--~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~  392 (626)
                      ++.++.||+|.-|...-..      .+.... .... -..+++..  .+.+|+.+ -..++|.+||-.-...... -.+.
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~  181 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFI  181 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCcc
Confidence            6778899999999753221      122211 1222 23444443  24555544 4568888887653322110 0000


Q ss_pred             cccccCCCCeEEEEE------------cCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEcC------C
Q 006909          393 DRKKTSGNKITGIQF------------SRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTT------T  453 (626)
Q Consensus       393 ~~~~~~~~~i~~l~~------------s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp------~  453 (626)
                      ............|+-            .++. ..=+.+..-|.|-+||.. +.++.+.....-...+.++..|      .
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence            000000111111211            1111 112223334789999976 5555565444445566676644      5


Q ss_pred             CCEEEEEeCCccEEEEECCCC
Q 006909          454 GKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       454 g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |.+|+---.||+|..||..++
T Consensus       261 g~lLVGNFGDG~InaFD~~sG  281 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSG  281 (336)
T ss_pred             CCeEEeecCCceeEEecCCCC
Confidence            677777777999999998876

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.95  E-value=31  Score=38.72  Aligned_cols=72  Identities=11%  Similarity=0.178  Sum_probs=48.1

Q ss_pred             ccceEEEEEcCCC-eEEEEeCCCcEEEeccC----------CCee--e-Eee---------cCCCCeEEEEEeeC--CCC
Q 006909          268 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG----------CNQC--L-NVF---------DHHNYVTCVQFNPI--DDN  322 (626)
Q Consensus       268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~----------~~~~--~-~~~---------~~~~~v~~~~~~p~--~~~  322 (626)
                      .-.|..|..+|+| +|+..|..| |.|-.+.          .|+.  . +++         .+...|..+.|+|.  ++.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            3578899999998 555555544 4444331          1111  1 111         23457899999994  257


Q ss_pred             EEEEEeCCCcEEEEeCCC
Q 006909          323 YFISGSIDGKVRIWGVCE  340 (626)
Q Consensus       323 ~l~s~s~dg~v~iwd~~~  340 (626)
                      +|+.-..|+++|+||+..
T Consensus       163 ~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             eEEEEecCCEEEEEecCC
Confidence            888999999999999964

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK13684 Ycf48-like protein; Provisional

Probab=90.27  E-value=15  Score=37.08  Aligned_cols=107  Identities=10%  Similarity=0.104  Sum_probs=62.3

Q ss_pred             ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe
Q 006909          268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  342 (626)
Q Consensus       268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~  342 (626)
                      ...++++.+.+++.++..+..|.+.+=..+.+..-....     ....+..+.+.| ++..++ ++.+|.+.. ....++
T Consensus       214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~-S~d~G~  290 (334)
T PRK13684        214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLV-SKDGGK  290 (334)
T ss_pred             cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEEE-eCCCCC
Confidence            457888999988865556667776543344443333222     123578888988 666555 445676553 344444


Q ss_pred             EEEe----ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEE
Q 006909          343 VVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYK  378 (626)
Q Consensus       343 ~~~~----~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d  378 (626)
                      ....    .......+.+.|..+++.++ .+..|.|.-|+
T Consensus       291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        291 TWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             CCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            3222    12234577788777766655 44567776654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.18  E-value=14  Score=37.80  Aligned_cols=123  Identities=17%  Similarity=0.267  Sum_probs=76.2

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      .+|+|.+++||+|.+.||.--.|.+|.+++....+..                                         ..
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~-----------------------------------------l~  103 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ-----------------------------------------LE  103 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchh-----------------------------------------hH
Confidence            5679999999999999999999999999987542110                                         01


Q ss_pred             CceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCC-eeeEee-cCCCCeEEEEEeeCCCCEEEEEe--CCCcEEE
Q 006909          260 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFISGS--IDGKVRI  335 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~-~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s--~dg~v~i  335 (626)
                      ..++.+..+..|....|+.+.-++..+..| +-+|.+... ..++.. .|+..|+-..|.+ +.+.++.++  ..+++.=
T Consensus       104 ~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t~~~~n~lnp  181 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLSTTVLENVLNP  181 (657)
T ss_pred             HHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeecccccccccc
Confidence            122333445668899998776566555544 555554322 222223 3677788888888 555443332  3344444


Q ss_pred             EeCCCCeEEE
Q 006909          336 WGVCEKRVVD  345 (626)
Q Consensus       336 wd~~~~~~~~  345 (626)
                      +.++++.+.+
T Consensus       182 f~~~~~~v~k  191 (657)
T KOG2377|consen  182 FHFRAGTMSK  191 (657)
T ss_pred             EEEeeceeee
Confidence            5555554443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.17  E-value=0.98  Score=29.61  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=26.7

Q ss_pred             CCeEEEEEeeCCC--CEEEEEeCCCcEEEEeCCC
Q 006909          309 NYVTCVQFNPIDD--NYFISGSIDGKVRIWGVCE  340 (626)
Q Consensus       309 ~~v~~~~~~p~~~--~~l~s~s~dg~v~iwd~~~  340 (626)
                      +.|.++.|+|..+  ++|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998455  6888888889999999985

It contains a characteristic DLL sequence motif.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.98  E-value=6.5  Score=42.73  Aligned_cols=197  Identities=14%  Similarity=0.151  Sum_probs=98.1

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE--
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--  345 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~--  345 (626)
                      +...++..+|....-..+.--.|+|+++. |+.+...- ....+-.+.|+  +...|++...+|++++|++.......  
T Consensus        44 gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~s  120 (829)
T KOG2280|consen   44 GGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNS  120 (829)
T ss_pred             CCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhcccc
Confidence            33444555554311111333458888876 55555542 33378899998  46678888899999999987644333  


Q ss_pred             --eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc--EEEEEeCC
Q 006909          346 --WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ--RIMITSED  421 (626)
Q Consensus       346 --~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~l~~~s~d  421 (626)
                        .......|..+.+..+|  +++-..+|.+.+-+-............+.    ...+-+|-...+++.+  .++-....
T Consensus       121 vg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~----~~~~~~~Wt~~~~~~~~~~ll~v~~~  194 (829)
T KOG2280|consen  121 VGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPY----NELPKSCWTVFQPHRQSTILLDVDVA  194 (829)
T ss_pred             cccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCC----ccCCCcceeEecCCCcceeEEeechh
Confidence              12223335555555555  55555566555443221111111000010    0111122222222111  11111100


Q ss_pred             CcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          422 SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       422 g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      --..++.... ..+..........+..++.||+.++|+--...|.|.+-+.+..
T Consensus       195 v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  195 VGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             hhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            0011111111 1111111222366788999999999999999999999887654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.88  E-value=1.6  Score=40.97  Aligned_cols=71  Identities=11%  Similarity=0.081  Sum_probs=47.9

Q ss_pred             EEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc-------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909          357 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       357 ~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~  429 (626)
                      .+..+++++++-+.+|.+++||+.+.+.......+..-..       .....|+.+.++.+| .-+++ -.+|..+.|+.
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~-lsng~~y~y~~   94 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVT-LSNGDSYSYSP   94 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEE-EeCCCEEEecc
Confidence            3556889999999999999999998876554322111111       344678888888776 34443 44577788874

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.65  E-value=30  Score=36.43  Aligned_cols=54  Identities=15%  Similarity=0.157  Sum_probs=37.0

Q ss_pred             CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE------e-c-cCCCCeEEEEEeeCC
Q 006909          308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD------W-A-DVRDVISAICYIPDG  362 (626)
Q Consensus       308 ~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~------~-~-~~~~~i~~i~~sp~g  362 (626)
                      -...+.|+|.| ++++|++--..|.|++++..++....      . . ........|+++|+-
T Consensus        29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            45678999999 88777765446999999765543211      1 1 135668899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.28  E-value=3.8  Score=38.52  Aligned_cols=72  Identities=13%  Similarity=0.209  Sum_probs=49.5

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec---------------cCCCCeEEEEEeeCCCEEEEEecC
Q 006909          307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA---------------DVRDVISAICYIPDGKGFIVGSIT  371 (626)
Q Consensus       307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---------------~~~~~i~~i~~sp~g~~l~~g~~d  371 (626)
                      ...++..+..   .++++++.+.+|.+++||+.+++.+...               .....|..+.++.+|.-+++- .+
T Consensus        11 Lgs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sn   86 (219)
T PF07569_consen   11 LGSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SN   86 (219)
T ss_pred             cCCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eC
Confidence            3445555443   6788999999999999999987755311               244567777888777665554 45


Q ss_pred             CcEEEEEcCCC
Q 006909          372 GTCHFYKASGN  382 (626)
Q Consensus       372 g~i~i~d~~~~  382 (626)
                      |..+.|+..-.
T Consensus        87 g~~y~y~~~L~   97 (219)
T PF07569_consen   87 GDSYSYSPDLG   97 (219)
T ss_pred             CCEEEeccccc
Confidence            67777776543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.07  E-value=0.26  Score=53.76  Aligned_cols=116  Identities=17%  Similarity=0.246  Sum_probs=70.8

Q ss_pred             eeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccC--CCeeeEee------cCCCCeEEEEEeeC--CCCEEEEEeCC
Q 006909          263 ELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVG--CNQCLNVF------DHHNYVTCVQFNPI--DDNYFISGSID  330 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~--~~~~~~~~------~~~~~v~~~~~~p~--~~~~l~s~s~d  330 (626)
                      .++|..+.|..+.|...+  .+.  -.-|.+.|||+.  .|+....+      ....++.-+.|.|.  +.-++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            345778888888886432  222  233678889874  34332222      12334455555542  45667777778


Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEE-----------EEEeeCCCEEEEEecCCcEEEEEcC
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISA-----------ICYIPDGKGFIVGSITGTCHFYKAS  380 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~-----------i~~sp~g~~l~~g~~dg~i~i~d~~  380 (626)
                      +.|++..........+..|...+..           -.++|||+.++..+.||.+++|.+.
T Consensus       205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             CceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            8888877654332222334433322           2378999999999999999988764

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.00  E-value=7.2  Score=40.38  Aligned_cols=138  Identities=18%  Similarity=0.210  Sum_probs=84.0

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeC-------CCCEEEEEeCCCcEEEEeCCC-CeEEEeccCC--
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-------DDNYFISGSIDGKVRIWGVCE-KRVVDWADVR--  350 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~-------~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~--  350 (626)
                      .+..+..-..++-.|++.|+.+........| -+.|.|.       +.+.|+-.| +..|.-.|.+- +..+.....+  
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~esKdY  559 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVESKDY  559 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeeeehhc
Confidence            3445666677888899999999888766666 6777771       233454444 45555556543 3222222222  


Q ss_pred             ---CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909          351 ---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  427 (626)
Q Consensus       351 ---~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw  427 (626)
                         ....+..-..+| ++++++..|-|++||--+......       .++.+..|..+..+.+| .++++.+ ...+.+-
T Consensus       560 ~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKta-------lP~lG~aIk~idvta~G-k~ilaTC-k~yllL~  629 (776)
T COG5167         560 KTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTA-------LPGLGDAIKHIDVTANG-KHILATC-KNYLLLT  629 (776)
T ss_pred             cccccccccccccCc-eEEEecCCCceeeehhhcchhhhc-------CcccccceeeeEeecCC-cEEEEee-cceEEEE
Confidence               223333333344 899999999999999655433211       23335789999999998 4554444 4566676


Q ss_pred             eCC
Q 006909          428 DGV  430 (626)
Q Consensus       428 d~~  430 (626)
                      |+.
T Consensus       630 d~~  632 (776)
T COG5167         630 DVP  632 (776)
T ss_pred             ecc
Confidence            643

>PHA02790 Kelch-like protein; Provisional

Probab=88.66  E-value=35  Score=36.57  Aligned_cols=100  Identities=13%  Similarity=0.107  Sum_probs=52.4

Q ss_pred             eEEEEeCC--CcEEEeccCCCeeeEeecCCCCe--EEEEEeeCCCCEEEEEeCCC---cEEEEeCCCCeEEEeccCCCCe
Q 006909          281 YLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYV--TCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVRDVI  353 (626)
Q Consensus       281 ~l~s~s~d--~~v~iwd~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~i  353 (626)
                      ..+.|+.+  .++..||..+++....-....+.  .+++..  ++.+.+.|+.++   .+..||..+.+=........+.
T Consensus       321 iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r  398 (480)
T PHA02790        321 LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH  398 (480)
T ss_pred             EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence            45556543  45778887665443322211111  122222  678888887654   4778888766543322221111


Q ss_pred             -EEEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909          354 -SAICYIPDGKGFIVGSITGTCHFYKASGNDLK  385 (626)
Q Consensus       354 -~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~  385 (626)
                       ......-+|+..+.|   |.+.+||..+++..
T Consensus       399 ~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~  428 (480)
T PHA02790        399 YKSCALVFGRRLFLVG---RNAEFYCESSNTWT  428 (480)
T ss_pred             ccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence             111223456666666   35788988766543

>PRK13684 Ycf48-like protein; Provisional

Probab=88.19  E-value=31  Score=34.85  Aligned_cols=151  Identities=16%  Similarity=0.138  Sum_probs=84.2

Q ss_pred             ccceEEEEEcCCCeEEEEeCCCcEEEe-ccCCCeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909          268 KGDVLDLAWSNSNYLLSCSMDKTVRMW-QVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  344 (626)
Q Consensus       268 ~~~V~~l~~s~~~~l~s~s~d~~v~iw-d~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~  344 (626)
                      ...+.++.+.+++.++..+..|.+..- +- .++.....  .....++++.+.+ ++..++++ ..|.+++=....+...
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence            456888898898866666666755432 22 22222222  2445789999998 77776665 4576654334444432


Q ss_pred             Eecc-----CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909          345 DWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  419 (626)
Q Consensus       345 ~~~~-----~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s  419 (626)
                      ....     ....+.++.+.|++..++ ++.+|.+.. ....+.. .......   .........+.|..++  ..++.+
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~t-W~~~~~~---~~~~~~~~~~~~~~~~--~~~~~G  320 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKT-WEKDPVG---EEVPSNFYKIVFLDPE--KGFVLG  320 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCC-CeECCcC---CCCCcceEEEEEeCCC--ceEEEC
Confidence            2111     124578889999876555 445665543 3332221 1111110   0112457778877664  456677


Q ss_pred             CCCcEEEEeC
Q 006909          420 EDSKLRILDG  429 (626)
Q Consensus       420 ~dg~i~iwd~  429 (626)
                      ..|.|..++.
T Consensus       321 ~~G~il~~~~  330 (334)
T PRK13684        321 QRGVLLRYVG  330 (334)
T ss_pred             CCceEEEecC
Confidence            7788877763

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.38  E-value=10  Score=38.25  Aligned_cols=110  Identities=17%  Similarity=0.268  Sum_probs=57.1

Q ss_pred             CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC---CCcEEEEEeCC------C
Q 006909          352 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD---ESQRIMITSED------S  422 (626)
Q Consensus       352 ~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~---~~~~l~~~s~d------g  422 (626)
                      ...+|+|.|+|+.++ +...|.|++++. .+......................++++|+   +..+.++.+..      .
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            357899999986655 566999999993 333211111121222333467899999994   11333333321      1


Q ss_pred             --cEEEEeCC-------cceeeeeec----CCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          423 --KLRILDGV-------DVIHKFKGL----PKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       423 --~i~iwd~~-------~~~~~~~~~----~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                        .|.-|...       .....+...    .....-..+.|.|||.+.++.++.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence              23333221       111222221    234456779999999877776643

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.21  E-value=35  Score=34.28  Aligned_cols=105  Identities=9%  Similarity=0.153  Sum_probs=54.9

Q ss_pred             CCCeEEEEeCC-----CcEEEeccCCCee---eEeec-CCCCe--EEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCC
Q 006909          278 NSNYLLSCSMD-----KTVRMWQVGCNQC---LNVFD-HHNYV--TCVQFNPIDDNYFISGSID-----GKVRIWGVCEK  341 (626)
Q Consensus       278 ~~~~l~s~s~d-----~~v~iwd~~~~~~---~~~~~-~~~~v--~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~  341 (626)
                      .+..++.|+.+     ..+..+|+.+.+.   ..... ...+.  .+++..  ++.+++.|+..     ..+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            33455666654     3466677766543   12221 11111  222222  56777777642     35888898876


Q ss_pred             eEEEeccC--CCCeEEEEEeeCCCEEEEEecCC----cEEEEEcCCCce
Q 006909          342 RVVDWADV--RDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDL  384 (626)
Q Consensus       342 ~~~~~~~~--~~~i~~i~~sp~g~~l~~g~~dg----~i~i~d~~~~~~  384 (626)
                      +=......  .......+...+++..+.|+.++    .+.+||..+...
T Consensus       150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            54333221  11222333345677778887664    346788877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.17  E-value=27  Score=38.63  Aligned_cols=118  Identities=12%  Similarity=0.117  Sum_probs=71.2

Q ss_pred             eEEEEEee--CCCEEEEEecCCcEEEEEcCCCceeee-----------EEee-ccccccCCCCeEEEEEc--CCCCcEEE
Q 006909          353 ISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLE-----------KVDF-HDRKKTSGNKITGIQFS--RDESQRIM  416 (626)
Q Consensus       353 i~~i~~sp--~g~~l~~g~~dg~i~i~d~~~~~~~~~-----------~~~~-~~~~~~~~~~i~~l~~s--~~~~~~l~  416 (626)
                      |+.|....  +...|+++..||.|.+|.+..-.....           .... ..-....+....+++++  .. .++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~-~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK-SRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc-ceEEE
Confidence            45454433  446788899999999997631100000           0000 00001123578889987  55 36888


Q ss_pred             EEeCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCC-----C-EEEEEeCCccEEEEEC
Q 006909          417 ITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG-----K-HIISIGDDCRVYVWNY  471 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g-----~-~l~s~s~dg~I~iwd~  471 (626)
                      +++....|.||-...   .......+.+...|.+++|-++.     . +|++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888888875321   11111123466788999996543     2 7888888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.01  E-value=29  Score=32.14  Aligned_cols=109  Identities=13%  Similarity=0.181  Sum_probs=68.1

Q ss_pred             EEEcCCCeEEEEeCCCcEEEeccC--CCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC------cEEEE-eCCCC---
Q 006909          274 LAWSNSNYLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG------KVRIW-GVCEK---  341 (626)
Q Consensus       274 l~~s~~~~l~s~s~d~~v~iwd~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg------~v~iw-d~~~~---  341 (626)
                      ++-++.+.|+.+...+.|.+|++.  ..+.+..|..-+.|..+.++. .|+++++--.+.      .+|+| +.+..   
T Consensus        23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~  101 (215)
T PF14761_consen   23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE  101 (215)
T ss_pred             eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence            333343444444566789999987  456677787779999999999 999999864332      56665 22211   


Q ss_pred             -e--EEEec---------------------cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909          342 -R--VVDWA---------------------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  384 (626)
Q Consensus       342 -~--~~~~~---------------------~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~  384 (626)
                       .  .....                     ....++.+++-.|-.--|++|+ ++.+.+|.+.....
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI  167 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence             1  11111                     2234577788878444455555 45888888764433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.64  E-value=14  Score=40.24  Aligned_cols=80  Identities=14%  Similarity=0.313  Sum_probs=53.7

Q ss_pred             CeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEE
Q 006909          299 NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK  378 (626)
Q Consensus       299 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d  378 (626)
                      ..|.........++++.-+| .+.-++++..||.|++|+....+...+-....+-..+.|...|  |++.+.|..+.-|.
T Consensus         5 ~~~s~~~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen    5 FDCSRDPKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             ccccCCccccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence            33444444566788999999 9999999999999999998655443333333344445555444  66777777777776


Q ss_pred             cCC
Q 006909          379 ASG  381 (626)
Q Consensus       379 ~~~  381 (626)
                      -.+
T Consensus        82 ~dg   84 (1636)
T KOG3616|consen   82 EDG   84 (1636)
T ss_pred             ccC
Confidence            443

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=85.20  E-value=77  Score=36.38  Aligned_cols=172  Identities=13%  Similarity=0.156  Sum_probs=98.6

Q ss_pred             EEEeccCCCeeeEeecCCC-----CeEEEEEeeCCCC-EEEEEeC-----------CCcEEEEeC-CCCe---EEEeccC
Q 006909          291 VRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDN-YFISGSI-----------DGKVRIWGV-CEKR---VVDWADV  349 (626)
Q Consensus       291 v~iwd~~~~~~~~~~~~~~-----~v~~~~~~p~~~~-~l~s~s~-----------dg~v~iwd~-~~~~---~~~~~~~  349 (626)
                      |++.|..++..+..+.+..     .+..+.|+..+.. ++++|..           +|.++.|++ +.++   +......
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            6777777777666664332     3566667653333 3333321           344666664 2333   3333444


Q ss_pred             CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909          350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       350 ~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~  429 (626)
                      ...+.++  .|...++++| ....+++||+...+.......     +.....|+.+++..   .++++|...-.+..+-.
T Consensus       935 ~~~v~Ai--~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~-----k~~p~~Is~iqt~~---~RI~VgD~qeSV~~~~y 1003 (1205)
T KOG1898|consen  935 PGPVGAI--CPFQGRVLAG-VGRFLRLYDLGKKKLLRKCEL-----KFIPNRISSIQTYG---ARIVVGDIQESVHFVRY 1003 (1205)
T ss_pred             CccceEE--eccCCEEEEe-cccEEEEeeCChHHHHhhhhh-----ccCceEEEEEeecc---eEEEEeeccceEEEEEE
Confidence            5556555  4666555554 566999999987665433111     11236788888765   36777766666655442


Q ss_pred             C---cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          430 V---DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       430 ~---~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +   +....+...+-...|+++.+- |-..+|.+..=|.+.+-.+...
T Consensus      1004 ~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1004 RREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred             ecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence            2   344455554445566666653 5556777777788888877654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=85.09  E-value=45  Score=33.58  Aligned_cols=147  Identities=17%  Similarity=0.240  Sum_probs=80.5

Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCc------EEEEeCCC--C---eE-----EEeccCCC--------CeEEEEEeeCCCE
Q 006909          309 NYVTCVQFNPIDDNYFISGSIDGK------VRIWGVCE--K---RV-----VDWADVRD--------VISAICYIPDGKG  364 (626)
Q Consensus       309 ~~v~~~~~~p~~~~~l~s~s~dg~------v~iwd~~~--~---~~-----~~~~~~~~--------~i~~i~~sp~g~~  364 (626)
                      +.+..+.+.| ++..+++.+.+|.      +..+++..  +   .+     ..+....+        -.-+|++.++|.+
T Consensus        20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            4567777776 5556666666666      55554433  1   11     11111111        3447788777877


Q ss_pred             EEEEecC------CcEEEEEcCCCceeeeEEeecc---------ccccCCCCeEEEEEcCCCCcEEEEEeC-----CC--
Q 006909          365 FIVGSIT------GTCHFYKASGNDLKLEKVDFHD---------RKKTSGNKITGIQFSRDESQRIMITSE-----DS--  422 (626)
Q Consensus       365 l~~g~~d------g~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~i~~l~~s~~~~~~l~~~s~-----dg--  422 (626)
                      +++.-.+      ..|..++.. +... ..+..+.         ..........+++++|+| +.|+++.+     |+  
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~-~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVI-RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGPR  175 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-Cccc-ceEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCcc
Confidence            7766556      678888766 3321 1111111         122345678999999998 44555433     22  


Q ss_pred             c-------EEEE--eCCc---ceeeeee--cC-----CCCCeEEEEEcCCCCEEEE
Q 006909          423 K-------LRIL--DGVD---VIHKFKG--LP-----KSGSQMSASFTTTGKHIIS  459 (626)
Q Consensus       423 ~-------i~iw--d~~~---~~~~~~~--~~-----~~~~v~~~~~sp~g~~l~s  459 (626)
                      .       ++|+  |..+   ....+..  ..     ....+..+.+-+++++|+.
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            1       4554  4332   1233322  21     3567888888899887765

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.56  E-value=10  Score=34.09  Aligned_cols=29  Identities=21%  Similarity=0.366  Sum_probs=24.4

Q ss_pred             cceEEEEEcCCC-------eEEEEeCCCcEEEeccC
Q 006909          269 GDVLDLAWSNSN-------YLLSCSMDKTVRMWQVG  297 (626)
Q Consensus       269 ~~V~~l~~s~~~-------~l~s~s~d~~v~iwd~~  297 (626)
                      ..|..++|||.|       .|++.+.++.|.||.-.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            489999999843       68889999999999765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=84.30  E-value=12  Score=38.72  Aligned_cols=46  Identities=22%  Similarity=0.129  Sum_probs=38.3

Q ss_pred             cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 006909          169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA  214 (626)
Q Consensus       169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~  214 (626)
                      .++.+...|......+.+++.+|++++.|+...=|.|.++|+.++.
T Consensus       295 ~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~  340 (415)
T PF14655_consen  295 APLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI  340 (415)
T ss_pred             cccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence            4455666777888889999999999999988777999999998753

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.51  E-value=25  Score=36.14  Aligned_cols=134  Identities=13%  Similarity=0.133  Sum_probs=73.3

Q ss_pred             CCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cc--eeee
Q 006909          362 GKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DV--IHKF  436 (626)
Q Consensus       362 g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~--~~~~  436 (626)
                      .+..+.+...|.+.=|-+.+...... .+....     .++|.++.|++|. +.+++--.+++|.+++-.  +.  ....
T Consensus        33 aNkqlfavrSggatgvvvkgpndDVpiSfdm~d-----~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~  106 (657)
T KOG2377|consen   33 ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDD-----KGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQ  106 (657)
T ss_pred             CcceEEEEecCCeeEEEEeCCCCCCCceeeecC-----CCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHH
Confidence            33344444445555555544332211 233333     2799999999997 789999999999999852  11  1112


Q ss_pred             eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC--CCCCCccCCccceeeeccCCcEEEEecC
Q 006909          437 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC--FPSSKQKNSVRSCEHFFSEGVSVAVQWP  503 (626)
Q Consensus       437 ~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~g~~~av~~s  503 (626)
                      +.......|.+..|+.+ .-+|..+.. -+-+|-+....  .......+..+.-..+.++.....++.+
T Consensus       107 ~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  107 ECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             HhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            22234567899999866 556655543 36667665431  2222222222333344555555444433

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=83.46  E-value=56  Score=33.40  Aligned_cols=140  Identities=14%  Similarity=0.172  Sum_probs=81.1

Q ss_pred             CcEEEeccC--CCeeeEeec--------CCCCeEEEEEe--eCCCC-EEEEEeCCCcEEEEeCC---CC----eEEEecc
Q 006909          289 KTVRMWQVG--CNQCLNVFD--------HHNYVTCVQFN--PIDDN-YFISGSIDGKVRIWGVC---EK----RVVDWAD  348 (626)
Q Consensus       289 ~~v~iwd~~--~~~~~~~~~--------~~~~v~~~~~~--p~~~~-~l~s~s~dg~v~iwd~~---~~----~~~~~~~  348 (626)
                      .+|++|.+.  ++. +..+.        ....+..+++.  |.++. +++....+|.+..|-+.   .+    ++++...
T Consensus       127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~  205 (381)
T PF02333_consen  127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK  205 (381)
T ss_dssp             -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred             CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence            469999775  343 33321        11246666664  43444 56667788988877663   23    3455666


Q ss_pred             CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEc--CCCCcEEEEEe-CCCcE
Q 006909          349 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFS--RDESQRIMITS-EDSKL  424 (626)
Q Consensus       349 ~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s--~~~~~~l~~~s-~dg~i  424 (626)
                      ....+..|........|+++-.+--|.-|+......... .+.... .......|-.|++-  +++..+|++++ .+++.
T Consensus       206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf  284 (381)
T PF02333_consen  206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF  284 (381)
T ss_dssp             -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred             CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccc-ccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence            677899999998888999999998888888864332221 121111 11223577888874  34434555554 46789


Q ss_pred             EEEeCC
Q 006909          425 RILDGV  430 (626)
Q Consensus       425 ~iwd~~  430 (626)
                      .||+..
T Consensus       285 ~Vy~r~  290 (381)
T PF02333_consen  285 AVYDRE  290 (381)
T ss_dssp             EEEESS
T ss_pred             EEEecC
Confidence            999955

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=83.17  E-value=91  Score=35.58  Aligned_cols=144  Identities=13%  Similarity=0.115  Sum_probs=83.7

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeC--CCC---EEEEEeCCCcEEEEe-CCCCeEEEe-----c
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI--DDN---YFISGSIDGKVRIWG-VCEKRVVDW-----A  347 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~--~~~---~l~s~s~dg~v~iwd-~~~~~~~~~-----~  347 (626)
                      .++.++.++.+...++..+......  .....|.|+.++|.  +.+   +++.|.++..+.+.- +........     .
T Consensus       501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~  580 (1096)
T KOG1897|consen  501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE  580 (1096)
T ss_pred             EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence            6777777777777777655532222  24568999999984  334   788888877655543 222222221     1


Q ss_pred             cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909          348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  427 (626)
Q Consensus       348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw  427 (626)
                      ..+..|.-.++-.|..+|.++..||.+..|.+...........   +..-...++.--.|+..+...+++.++- -..+|
T Consensus       581 ~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K---k~~lGt~P~~Lr~f~sk~~t~vfa~sdr-P~viY  656 (1096)
T KOG1897|consen  581 IIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRK---KVTLGTQPISLRTFSSKSRTAVFALSDR-PTVIY  656 (1096)
T ss_pred             ccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccc---ccccCCCCcEEEEEeeCCceEEEEeCCC-CEEEE
Confidence            2233455555656788999999999998887765544332111   0011124666666776664555555543 33344


Q ss_pred             e
Q 006909          428 D  428 (626)
Q Consensus       428 d  428 (626)
                      .
T Consensus       657 ~  657 (1096)
T KOG1897|consen  657 S  657 (1096)
T ss_pred             e
Confidence            3

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=82.28  E-value=44  Score=31.30  Aligned_cols=184  Identities=13%  Similarity=0.049  Sum_probs=95.6

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCC--CEEE-EEeCCCcEEEEeCCCC--eEEEe------ccC
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD--NYFI-SGSIDGKVRIWGVCEK--RVVDW------ADV  349 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~-s~s~dg~v~iwd~~~~--~~~~~------~~~  349 (626)
                      ++..-=..+.|.-||+.+++..+.--...+..++.+ |..+  +.++ .++..-.|.-||-...  .+...      ...
T Consensus        29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k  107 (310)
T KOG4499|consen   29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK  107 (310)
T ss_pred             EEEEEeccCceehhhhhhhheEEEEEecCcceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence            444444456777799987665443322222333333 2122  2333 3333233445663322  11111      112


Q ss_pred             CCCeEEEEEeeCCCEEEEEec----------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909          350 RDVISAICYIPDGKGFIVGSI----------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  419 (626)
Q Consensus       350 ~~~i~~i~~sp~g~~l~~g~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s  419 (626)
                      +...+.-..+|+|++ ..|..          .|.++.|-....-...  +..       -.--..++|+.+...+.++-+
T Consensus       108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i--~~~-------v~IsNgl~Wd~d~K~fY~iDs  177 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELI--WNC-------VGISNGLAWDSDAKKFYYIDS  177 (310)
T ss_pred             hcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceee--ehh-------ccCCccccccccCcEEEEEcc
Confidence            345666678899988 44433          1344444332211111  000       123356889888766777788


Q ss_pred             CCCcEEEEeCC-------cceeeeeecC----CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          420 EDSKLRILDGV-------DVIHKFKGLP----KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       420 ~dg~i~iwd~~-------~~~~~~~~~~----~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      .+-+|.-||..       +....+....    ..-..-.+++..+|++.++.-..++|...|..++.
T Consensus       178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK  244 (310)
T KOG4499|consen  178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK  244 (310)
T ss_pred             CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc
Confidence            88889888822       2222222211    11122345566788888888888999999999883

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.22  E-value=13  Score=43.20  Aligned_cols=166  Identities=13%  Similarity=0.219  Sum_probs=93.2

Q ss_pred             eecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEEeccCCCCeEEEEE--------eeCCCEEEEEecCCcE
Q 006909          304 VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDVISAICY--------IPDGKGFIVGSITGTC  374 (626)
Q Consensus       304 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~i~~i~~--------sp~g~~l~~g~~dg~i  374 (626)
                      .+.|...-..+-+.|.=+..-+|  .|+.+.+|+..+ ++...+.+....|..+..        .|.=+++++-+.--.|
T Consensus        74 q~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei  151 (1311)
T KOG1900|consen   74 QFSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEI  151 (1311)
T ss_pred             HhcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceE
Confidence            33444444445555533444444  578999999987 445455555556655542        3333455555555566


Q ss_pred             EEEEcCCCceeeeEEeecc--ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE--EeCCc------c------------
Q 006909          375 HFYKASGNDLKLEKVDFHD--RKKTSGNKITGIQFSRDESQRIMITSEDSKLRI--LDGVD------V------------  432 (626)
Q Consensus       375 ~i~d~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i--wd~~~------~------------  432 (626)
                      .++-+.-.........+..  .....+..|+++....+|  .++.++.||.|+=  |...+      +            
T Consensus       152 ~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG--RIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~  229 (1311)
T KOG1900|consen  152 VILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENG--RIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSS  229 (1311)
T ss_pred             EEEEEEeccccCcccccccceeeecCCceEEEEEeccCC--cEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHH
Confidence            6665533222211111111  111224678999978887  4555555663322  11110      0            


Q ss_pred             -ee-eeeec-CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          433 -IH-KFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       433 -~~-~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                       +. .+... .+..+|..+......+.+.+-+..|+|.+|++..
T Consensus       230 lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  230 LVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence             00 11111 3567899999988888999999999999999987

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=82.20  E-value=44  Score=31.28  Aligned_cols=169  Identities=14%  Similarity=0.213  Sum_probs=90.0

Q ss_pred             CeEEEEeCCCcEEEeccC--CCeeeEee------cCCCCeEEEEEeeCCCCEEEEEeCC---------CcEEEEeCCCCe
Q 006909          280 NYLLSCSMDKTVRMWQVG--CNQCLNVF------DHHNYVTCVQFNPIDDNYFISGSID---------GKVRIWGVCEKR  342 (626)
Q Consensus       280 ~~l~s~s~d~~v~iwd~~--~~~~~~~~------~~~~~v~~~~~~p~~~~~l~s~s~d---------g~v~iwd~~~~~  342 (626)
                      .+.+.++..-.|.-||..  .....++.      ......+.-..+| +|++++-.-.|         |.++.|-.. ++
T Consensus        72 ~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~  149 (310)
T KOG4499|consen   72 EFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG-HQ  149 (310)
T ss_pred             eEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccC-CC
Confidence            355555555556667743  22333331      1234556667788 88884422222         334444321 22


Q ss_pred             EEEeccCCCCeEEEEEeeCCCEEEE-EecCCcEEEEE--cCCCceeeeE--EeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          343 VVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYK--ASGNDLKLEK--VDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       343 ~~~~~~~~~~i~~i~~sp~g~~l~~-g~~dg~i~i~d--~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      +......-..-+.++|+.+.+.+.. -+.+-.|.-||  ..++......  +.+........--.-.++...+| ++.++
T Consensus       150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va  228 (310)
T KOG4499|consen  150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVA  228 (310)
T ss_pred             ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEE
Confidence            2222222334467888888776665 44556776677  5555433221  11111100011122344455565 67788


Q ss_pred             EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEc
Q 006909          418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT  451 (626)
Q Consensus       418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  451 (626)
                      +-..++|...|..+........-....+++++|-
T Consensus       229 ~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  229 TFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             EecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            8888999999977655544443357789999995

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=81.92  E-value=44  Score=36.95  Aligned_cols=97  Identities=9%  Similarity=0.107  Sum_probs=55.7

Q ss_pred             CCeEEEEEeeCCCEEEEEecCC-----cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 006909          351 DVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  425 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~  425 (626)
                      +.-..++|-|+|..+++-..||     .+.++.-++-+.--...     ...-...+..++|.-..  .+++.+..+.|+
T Consensus       247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~l-----r~~~dEk~~~~~wn~~s--~vlav~~~n~~~  319 (1243)
T COG5290         247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDL-----RVGCDEKAFLENWNLLS--TVLAVAEGNLLK  319 (1243)
T ss_pred             cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccc-----cCCchhhhhhhhhhHHH--HHHHHhhcceEE
Confidence            3344588999999999876554     34555433321100000     01112456667776653  345556678999


Q ss_pred             EEeCCcceeeeeecCCCCCeEEEEEcCCC
Q 006909          426 ILDGVDVIHKFKGLPKSGSQMSASFTTTG  454 (626)
Q Consensus       426 iwd~~~~~~~~~~~~~~~~v~~~~~sp~g  454 (626)
                      +|-..+...-++.......+.-+.|+|..
T Consensus       320 lwttkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         320 LWTTKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             EEEccceEEEEEEeecCCCcceeeecccc
Confidence            99877654444443344456667888854

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=81.64  E-value=1e+02  Score=35.09  Aligned_cols=157  Identities=11%  Similarity=0.070  Sum_probs=85.9

Q ss_pred             CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeE-------------EEEEee-CCCCEEEEEeC----------CCcEEE
Q 006909          280 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-------------CVQFNP-IDDNYFISGSI----------DGKVRI  335 (626)
Q Consensus       280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~-------------~~~~~p-~~~~~l~s~s~----------dg~v~i  335 (626)
                      +.++.++.|+.|.-.|..+|+....|.....|.             .+.-.| ..++.+++|+.          +|.|+-
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            478888899999999999999988776443331             011111 02345666643          688999


Q ss_pred             EeCCCCeEEEeccC----------C---------CCeEEEEEeeCCCEEEEEec------------------CCcEEEEE
Q 006909          336 WGVCEKRVVDWADV----------R---------DVISAICYIPDGKGFIVGSI------------------TGTCHFYK  378 (626)
Q Consensus       336 wd~~~~~~~~~~~~----------~---------~~i~~i~~sp~g~~l~~g~~------------------dg~i~i~d  378 (626)
                      +|.++++++=....          .         ..-..+++.|....++.+..                  .+.|.-.|
T Consensus       341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD  420 (764)
T TIGR03074       341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD  420 (764)
T ss_pred             EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence            99999886531111          0         00123455555555554332                  23555666


Q ss_pred             cCCCceeeeEEe-eccccc-cCCCCeEEEEEcC-CCC--cEEEEEeCCCcEEEEeCCcceeee
Q 006909          379 ASGNDLKLEKVD-FHDRKK-TSGNKITGIQFSR-DES--QRIMITSEDSKLRILDGVDVIHKF  436 (626)
Q Consensus       379 ~~~~~~~~~~~~-~~~~~~-~~~~~i~~l~~s~-~~~--~~l~~~s~dg~i~iwd~~~~~~~~  436 (626)
                      .++++....... .|.... .......-+.+.. +|.  ..++.++.+|.+.++|-.+.....
T Consensus       421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            666665443111 111000 0001111222322 431  278889999999999976554433

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=80.44  E-value=1.3e+02  Score=35.59  Aligned_cols=16  Identities=19%  Similarity=-0.027  Sum_probs=11.8

Q ss_pred             ccCCccccCCCCcccc
Q 006909          539 FSLGSWFSNDGPCRGS  554 (626)
Q Consensus       539 ~~~~~~~s~dg~~l~s  554 (626)
                      ...++|.+|||..+..
T Consensus       663 sp~alaVsPdg~v~IA  678 (1899)
T KOG4659|consen  663 SPYALAVSPDGDVIIA  678 (1899)
T ss_pred             CcceEEECCCCcEEEe
Confidence            3567899999995544

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=80.03  E-value=1.2e+02  Score=34.81  Aligned_cols=159  Identities=13%  Similarity=0.163  Sum_probs=96.6

Q ss_pred             cCccceEEEEEc---C--C--CeEEEEeCCCcEEEecc------CC---------CeeeEeec----CCCCeEEEEEeeC
Q 006909          266 GHKGDVLDLAWS---N--S--NYLLSCSMDKTVRMWQV------GC---------NQCLNVFD----HHNYVTCVQFNPI  319 (626)
Q Consensus       266 ~h~~~V~~l~~s---~--~--~~l~s~s~d~~v~iwd~------~~---------~~~~~~~~----~~~~v~~~~~~p~  319 (626)
                      .-..+|..|+|.   .  +  ..++..-....+.|+..      ..         ..++..+.    ...+...++|+|.
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            356788888887   2  1  13455555556666661      11         12233332    3447789999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC------eEEEeccCC----------CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc
Q 006909          320 DDNYFISGSIDGKVRIWGVCEK------RVVDWADVR----------DVISAICYIPDGKGFIVGSITGTCHFYKASGND  383 (626)
Q Consensus       320 ~~~~l~s~s~dg~v~iwd~~~~------~~~~~~~~~----------~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~  383 (626)
                      +...||.....|...||++...      .........          ..-..+.|.++.+.|++++.. .+.++|+.+..
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~  235 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNW  235 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCC
Confidence            8889999999999999999211      111111111          223478898888888887654 78899998765


Q ss_pred             eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      .......     ......|..+.-+|....+++.-. ...|...++..
T Consensus       236 ~~~~l~~-----~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  236 QTEYLVT-----AKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             ccchhcc-----CCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            4221111     112367888888887433444332 25676667654

These proteins are found in fungi.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	626
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-21
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-21
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-20
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-20
2h9l_A	329	Wdr5delta23 Length = 329		6e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		9e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		9e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-19
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-10
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-10
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-09
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		5e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		6e-07
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		5e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		7e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-05
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-04

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 71/346 (20%)
Query: 132 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 191
           KK   E   ++   P+S   ++    VK N    ++FT       +  H   + ++KFSP
Sbjct: 8   KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 57
Query: 192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 251
           +G +LAS   D +++IW              DG F                         
Sbjct: 58  NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 82
Query: 252 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 309
                     + + GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H N
Sbjct: 83  ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 132
Query: 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 368
           YV C  FNP   N  +SGS D  VRIW V   + +       D +SA+ +  DG   +  
Sbjct: 133 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 191
Query: 369 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427
           S  G C  +  ASG  LK    D           ++ ++FS +  + I+  + D+ L++ 
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 243
Query: 428 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 470
           D      +  + G       + A+F+ T GK I+S  +D  VY+WN
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 71/346 (20%)
Query: 132 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 191
           KK   E   ++   P+S   ++    VK N    ++FT       +  H   + ++KFSP
Sbjct: 6   KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 55
Query: 192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 251
           +G +LAS   D +++IW              DG F                         
Sbjct: 56  NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 80
Query: 252 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 309
                     + + GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H N
Sbjct: 81  ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130
Query: 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 368
           YV C  FNP   N  +SGS D  VRIW V   + +       D +SA+ +  DG   +  
Sbjct: 131 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 369 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427
           S  G C  +  ASG  LK    D           ++ ++FS +  + I+  + D+ L++ 
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 241
Query: 428 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 470
           D      +  + G       + A+F+ T GK I+S  +D  VY+WN
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 67/304 (22%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 350
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G+C K +       
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 351 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409
           D +SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS 
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSP 205
Query: 410 DESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRV 466
           +  + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  V
Sbjct: 206 N-GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 467 YVWN 470
           Y+WN
Sbjct: 265 YIWN 268

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 67/304 (22%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 350
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G+C K +       
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 351 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409
           D +SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS 
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSP 205
Query: 410 DESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRV 466
           +  + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  V
Sbjct: 206 N-GKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 467 YVWN 470
           Y+WN
Sbjct: 265 YIWN 268

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 470 N 470
           N
Sbjct: 271 N 271

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 59  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 204
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 470 N 470
           N
Sbjct: 265 N 265

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 59
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 60  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 95  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 153
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 154 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 205
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 206 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 470 N 470
           N
Sbjct: 266 N 266

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 470 N 470
           N
Sbjct: 271 N 271

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 75
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 76  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 169
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 170 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 221
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 222 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 470 N 470
           N
Sbjct: 282 N 282

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 59  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 204
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 470 N 470
           N
Sbjct: 265 N 265

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 63
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 64  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 99  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 157
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 158 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 209
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 210 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 470 N 470
           N
Sbjct: 270 N 270

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 54
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 55  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 90  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 148
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 149 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 200
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 201 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 470 N 470
           N
Sbjct: 261 N 261

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 470 N 470
           N
Sbjct: 271 N 271

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 57
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 58  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 93  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 151
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 152 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 203
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 204 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 470 N 470
           N
Sbjct: 264 N 264

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 470 N 470
           N
Sbjct: 268 N 268

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 470 N 470
           N
Sbjct: 268 N 268

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   + ++KFSP+G +LA+   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY-----------DGKFE--------- 61
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 470 N 470
           N
Sbjct: 268 N 268

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 128/308 (41%), Gaps = 39/308 (12%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW-----HVTSVAASCKS-----FTDDG 224
           Q +  H   +W + FSPDG+ +AS  +D  V++W     H+ ++     S     F+ DG
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 225 GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 283
              ++A           S    V + +   Q+    LQ L GH   V  +A+S +   + 
Sbjct: 357 QTIASA-----------SDDKTVKLWNRNGQL----LQTLTGHSSSVRGVAFSPDGQTIA 401
Query: 284 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343
           S S DKTV++W         +  H + V  V F+P DD    S S D  V++W    + +
Sbjct: 402 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLL 460
Query: 344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403
                    +  + + PDG+     S   T   +  +G    L+ +  H       + + 
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS------SSVR 512
Query: 404 GIQFSRDESQRIMITSEDSKLRILD-GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 462
           G+ FS D  Q I   S+D  +++ +    ++    G   S S    +F+  G+ I S   
Sbjct: 513 GVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASS 569
Query: 463 DCRVYVWN 470
           D  V +WN
Sbjct: 570 DKTVKLWN 577

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 54/196 (27%)
Query: 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSS 243
           I ++ FSPDG++LA+G ED ++RIW + +                               
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIEN------------------------------- 154
Query: 244 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVGCNQCL 302
                   ++  I       L GH+ D+  L +  + + L+S S D+TVR+W +   QC 
Sbjct: 155 -------RKIVMI-------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200
Query: 303 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV--------RDVIS 354
                 + VT V  +P D  Y  +GS+D  VR+W      +V+  D         +D + 
Sbjct: 201 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 260
Query: 355 AICYIPDGKGFIVGSI 370
           ++ +  DG+  + GS+
Sbjct: 261 SVVFTRDGQSVVSGSL 276

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/435 (22%), Positives = 182/435 (41%), Gaps = 69/435 (15%)
Query: 76  MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKK-----VKKLWKRIIS 130
           ++ + ++D++N  +      SNG+ ++   F+          + K     ++K W  +I 
Sbjct: 2   VLSQRQRDELNRAIADYL-RSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60
Query: 131 MKKR--NVETCMSE-KRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTL 187
           ++K+   +E+ ++E K +  S  P   K + K+   +  E  AL        H+  +  +
Sbjct: 61  LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYAL------SGHRSPVTRV 114
Query: 188 KFSPDGRYLASGGEDGVVRIWHVTS--VAASCKSFTD---DGGFGSNAXXXXXXXXXXXS 242
            F P    + S  ED  +++W   +     + K  TD   D  F  +            S
Sbjct: 115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-----S 169
Query: 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSMDKTVRMWQVGCNQC 301
           + + + + D  FQ  E  ++ +HGH  +V  ++   N ++++S S DKT++MW+V    C
Sbjct: 170 ADMTIKLWD--FQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 302 LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYI 359
           +  F  H  +V  V+ N  D     S S D  VR+W V  K    +  + R V+  I + 
Sbjct: 227 VKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 360 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 419
           P+     +   TG+                   + KK+       +  SRD++ ++   S
Sbjct: 286 PESSYSSISEATGS-------------------ETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 420 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY-DELCFPS 478
               L  L G D  +  +G+          F + GK I+S  DD  + VW+Y ++ C   
Sbjct: 327 TGMCLMTLVGHD--NWVRGVL---------FHSGGKFILSCADDKTLRVWDYKNKRCM-- 373
Query: 479 SKQKNSVRSCEHFFS 493
                ++ + EHF +
Sbjct: 374 ----KTLNAHEHFVT 384

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 42/268 (15%)
Query: 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS------VAASCK---- 218
           T L   + +Q H G +++L ++P+  ++ S  +DG + +W+  +      +   C     
Sbjct: 54  TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME 113
Query: 219 -SFTDDG------GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDV 271
            +F  +G      G  S               ++PV              + L GHKG  
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS-------------RVLTGHKGYA 160
Query: 272 LDLAW--SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNY 323
               +       L++ S D+T  +W V   Q +++F       H   V  +  N ++ N 
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 324 FISGSIDGKVRIWG--VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA-S 380
           FISGS D  VR+W   +  + V  +      I+++ + PDG+ F  GS  GTC  +   +
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 381 GNDLKLEKVDFHDRKKTSGNKITGIQFS 408
           G+ L++   +  DR       +T + FS
Sbjct: 281 GHQLQVYNRE-PDRNDNELPIVTSVAFS 307

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 116/282 (41%), Gaps = 33/282 (11%)
Query: 122 KKLWKRII-------------SMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEF 168
           KK WK  I             S K  N  TC++     NS        E++   K     
Sbjct: 83  KKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALL 142
Query: 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFG 227
             L        H+  I ++K++ DG ++ S   + V  +W+V S          + GG  
Sbjct: 143 NVL------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196
Query: 228 SNAXXXXXXXXXXXSSHV----PVVIPDE-----VFQI-EESPLQELHGHKGDVLDLAWS 277
            NA                     VIP       V+QI E++P  +L GH G +  L ++
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 278 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
           ++N  LLS S D T+R+W  G     N F  H+  + V  + + D+  IS S+DG VR+W
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDDKVISCSMDGSVRLW 315
Query: 337 GVCEKRVVDWADVRDV-ISAICYIPDGKGFIVGSITGTCHFY 377
            + +  ++  + V  V I A     DG+ + V  + G  + Y
Sbjct: 316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
           + ++ H   +  +  S DG++  SG  DG +R+W +T+   + +         S A    
Sbjct: 80  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 293
                  S    + + + +   + +   E H      +  + ++SN  ++SC  DK V++
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 294 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352
           W +  C    N   H  Y+  V  +P D +   SG  DG+  +W + E + +   D  D+
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258
Query: 353 ISAICYIPD 361
           I+A+C+ P+
Sbjct: 259 INALCFSPN 267

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 264 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQ 315
           L GH G V  +A +    + +LS S DKT+ MW++  ++         +  H ++V+ V 
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 316 FNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 371
            +  D  + +SGS DG +R+W    G   +R V     +DV+S + +  D +  + GS  
Sbjct: 94  ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS-VAFSSDNRQIVSGSRD 149
Query: 372 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGV 430
            T   +    N L + K    D   +    ++ ++FS + S  I+++   D  +++ +  
Sbjct: 150 KTIKLW----NTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
Query: 431 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473
           +   K   +  +G   + + +  G    S G D +  +W+ +E
Sbjct: 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 261 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI 319
           ++ L+GHK  +  L + +   ++S S D T+R+W + C  CL V + H   V C++F   
Sbjct: 289 VRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--- 344
Query: 320 DDNYFISGSIDGKVRIW 336
           D+   +SG+ DGK+++W
Sbjct: 345 DNKRIVSGAYDGKIKVW 361

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
           + ++ H   +  +  S DG++  SG  DG +R+W +T+   + +         S A    
Sbjct: 57  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 293
                  S    + + + +   + +   E H      +  + ++SN  ++SC  DK V++
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 294 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352
           W +  C    N   H  Y+  V  +P D +   SG  DG+  +W + E + +   D  D+
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 235
Query: 353 ISAICYIPD 361
           I+A+C+ P+
Sbjct: 236 INALCFSPN 244

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 264 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQ 315
           L GH G V  +A +    + +LS S DKT+ MW++  ++         +  H ++V+ V 
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 316 FNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 371
            +  D  + +SGS DG +R+W    G   +R V     +DV+S + +  D +  + GS  
Sbjct: 71  ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS-VAFSSDNRQIVSGSRD 126
Query: 372 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGV 430
            T   +    N L + K    D   +    ++ ++FS + S  I+++   D  +++ +  
Sbjct: 127 KTIKLW----NTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 431 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473
           +   K   +  +G   + + +  G    S G D +  +W+ +E
Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 256 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 313
           I +  L +L GH G V  L +++   L+S S D+TVR+W +    C +VF+ HN  V C 
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 314 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 370
             V++  I   Y ++GS D  + +W +  E  V D  +  D    + + P+   + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 371 TG 372
            G
Sbjct: 267 RG 268

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 44/235 (18%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 238
            H   + ++ FSPD R + SGG D  +R+W+V      C      G              
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK---GECMHTLSRGAH------------ 151
Query: 239 XXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 298
                       D V  +  SP           LD     +  ++S   D  V++W +  
Sbjct: 152 -----------TDWVSCVRFSP----------SLD-----APVIVSGGWDNLVKVWDLAT 185
Query: 299 NQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC 357
            + + ++  H NYVT V  +P D +   S   DG  R+W + +   +        I+ IC
Sbjct: 186 GRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC 244
Query: 358 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           + P+ + ++  +       +     D+ +E    H   K    +   I +S D S
Sbjct: 245 FSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 256 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 313
           I +  L +L GH G V  L +++   L+S S D+TVR+W +    C +VF+ HN  V C 
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 314 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 370
             V++  I   Y ++GS D  + +W +  E  V D  +  D    + + P+   + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 371 TG 372
            G
Sbjct: 267 RG 268

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 50/311 (16%)
Query: 140 MSEKRKPNSEKPKANKMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIW 185
           MSE  +   E  +  K +++  +K C + T               + T + ++ H   I+
Sbjct: 1   MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSS 243
            + +  D R L S  +DG + IW          S+T +        +            +
Sbjct: 60  AMHWGTDSRLLVSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 244 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 295
           +V     D +  I     +E        L GH G +    + + N +++ S D T  +W 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 296 VGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 350
           +   Q    F  H   V  +   P D   F+SG+ D   ++W    G+C +    +    
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 351 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410
             I+AIC+ P+G  F  GS   TC  +     DL+ ++             IT + FS+ 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK- 280
Query: 411 ESQRIMITSED 421
            S R+++   D
Sbjct: 281 -SGRLLLAGYD 290

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 53/237 (22%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   +  L+++PDGR+LASGG D +V +W          S   +GG+          
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW---------- 266
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVR 292
                                  PLQ    H+G V  +AW    SN L +   + D+ +R
Sbjct: 267 ----------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304
Query: 293 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGV-CEKRVVDWADV 349
           +W V    CL+  D H+ V  + ++P      ISG      ++ IW      +V +    
Sbjct: 305 IWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 363
Query: 350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406
              + ++   PDG      +   T   ++      +L+     +R+K S  K + I 
Sbjct: 364 TSRVLSLTMSPDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIH 416

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 53/237 (22%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
           +  H   +  L+++PDGR+LASGG D +V +W          S   +GG+          
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW---------- 277
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVR 292
                                  PLQ    H+G V  +AW    SN L +   + D+ +R
Sbjct: 278 ----------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 315
Query: 293 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGV-CEKRVVDWADV 349
           +W V    CL+  D H+ V  + ++P      ISG      ++ IW      +V +    
Sbjct: 316 IWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 374
Query: 350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406
              + ++   PDG      +   T   ++      +L+     +R+K S  K + I 
Sbjct: 375 TSRVLSLTMSPDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIH 427

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 50/311 (16%)
Query: 140 MSEKRKPNSEKPKANKMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIW 185
           MSE  +   E  +  K +++  +K C + T               + T + ++ H   I+
Sbjct: 1   MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSS 243
            + +  D R L S  +DG + IW          S+T +        +            +
Sbjct: 60  AMHWGTDSRLLLSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 244 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 295
           +V     D +  I     +E        L GH G +    + + N +++ S D T  +W 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 296 VGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 350
           +   Q    F  H   V  +   P D   F+SG+ D   ++W    G+C +    +    
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 351 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410
             I+AIC+ P+G  F  GS   TC  +     DL+ ++             IT + FS+ 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK- 280
Query: 411 ESQRIMITSED 421
            S R+++   D
Sbjct: 281 -SGRLLLAGYD 290

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 155 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 200
           K +++  +K C + T               + T + ++ H   I+ + +  D R L S  
Sbjct: 26  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 85
Query: 201 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 258
           +DG + IW          S+T +        +            ++V     D +  I  
Sbjct: 86  QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 136
Query: 259 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 310
              +E        L GH G +    + + N +++ S D T  +W +   Q    F  H  
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 196
Query: 311 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 365
            V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ P+G  F
Sbjct: 197 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 252
Query: 366 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421
             GS   TC  +     DL+ ++             IT + FS+  S R+++   D
Sbjct: 253 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 301

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 155 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 200
           K +++  +K C + T               + T + ++ H   I+ + +  D R L S  
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 74
Query: 201 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 258
           +DG + IW          S+T +        +            ++V     D +  I  
Sbjct: 75  QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 259 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 310
              +E        L GH G +    + + N +++ S D T  +W +   Q    F  H  
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 311 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 365
            V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ P+G  F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 366 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421
             GS   TC  +     DL+ ++             IT + FS+  S R+++   D
Sbjct: 242 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 155 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 200
           K +++  +K C + T               + T + ++ H   I+ + +  D R L S  
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSAS 74
Query: 201 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 258
           +DG + IW          S+T +        +            ++V     D +  I  
Sbjct: 75  QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 259 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 310
              +E        L GH G +    + + N +++ S D T  +W +   Q    F  H  
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 311 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 365
            V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ P+G  F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 366 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421
             GS   TC  +     DL+ ++             IT + FS+  S R+++   D
Sbjct: 242 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 141 SEKRKPNSEKPKANKMEVKQNKKKCMEFT--ALYTSQEIQAHKGCIWTLKFSPDGRYLAS 198
           S K K   E+ K + +E+ Q  ++        + T + ++ H   +  + +  D R + S
Sbjct: 22  SLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVS 81
Query: 199 GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 258
             +DG V +W          SFT +                   S   +       +   
Sbjct: 82  SSQDGKVIVW---------DSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132
Query: 259 SPL------------QELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF 305
            PL            + +  H   +   +++NS+  +L+ S D T  +W V   Q L  F
Sbjct: 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 306 DHHNY-VTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDG 362
             H   V C+   P +  N F+SG  D K  +W +   + V   +  +  ++++ Y P G
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252
Query: 363 KGFIVGSITGTCHFY 377
             F  GS   TC  Y
Sbjct: 253 DAFASGSDDATCRLY 267

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 45/136 (33%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 246
           L+++PDGR+LASGG D +V +W          S   +GG+                    
Sbjct: 156 LRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW-------------------- 186
Query: 247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVRMWQVGCNQCL 302
                        PLQ    H+G V  +AW    SN L +   + D+ +R+W V    CL
Sbjct: 187 ------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Query: 303 NVFDHHNYVTCVQFNP 318
           +  D H+ V  + ++P
Sbjct: 235 SAVDAHSQVCSILWSP 250

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 5/191 (2%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
           + +  H   +  +  S DG++  SG  DG +R+W + +  ++ +         S A    
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY---LLSCSMDKTV 291
                  S    + + + + + + +  +   GH+  V  + +S +     ++S S DKTV
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 292 RMWQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 350
           ++W +  C     +  H  YV+ V  +P D +   SG  DG V +W + E + +   +  
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Query: 351 DVISAICYIPD 361
            VI A+C+ P+
Sbjct: 603 SVIHALCFSPN 613

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 55/257 (21%)
Query: 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 317
           P + L GH   V DLA S  N + +S S DKT+R+W +        F  H + V  V F+
Sbjct: 68  PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 318 PIDDNYFISGSIDGKVRIW---GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTC 374
           P D+   +S   + ++++W   G C+    +  +  D +S + Y P  K      +    
Sbjct: 128 P-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS--ANKVQPFA 184
Query: 375 HFYKASGND--LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 432
            ++ + G D  LK+   +F  R                                      
Sbjct: 185 PYFASVGWDGRLKVWNTNFQIR-------------------------------------- 206
Query: 433 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 492
            + FK    + + +S S    GK+I + G D ++ +W+   L +P  +        +  F
Sbjct: 207 -YTFKAHESNVNHLSIS--PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAF 263
Query: 493 SEGVSVAVQWPGIGTEQ 509
           +      +QW  +GT+Q
Sbjct: 264 NP----KLQWVAVGTDQ 276

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 58/172 (33%)
Query: 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 228
           T L+T   +Q H   +++L+F  DG ++ SG  D  +R+W V +   +C           
Sbjct: 270 TCLHT---LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET--GNC----------- 311
Query: 229 NAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMD 288
                                           +  L GH+     +   + N L+S + D
Sbjct: 312 --------------------------------IHTLTGHQSLTSGMELKD-NILVSGNAD 338
Query: 289 KTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
            TV++W +   QCL        H + VTC+QFN    N+ I+ S DG V++W
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLW 387

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 317
           E+ L  L GH   V  L + +  +++S S+D ++R+W V    C++    H  +T     
Sbjct: 269 ETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM-- 325
Query: 318 PIDDNYFISGSIDGKVRIWGV 338
            + DN  +SG+ D  V+IW +
Sbjct: 326 ELKDNILVSGNADSTVKIWDI 346

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 281 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 339 CE 340
            +
Sbjct: 171 GQ 172

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 281 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 339 CE 340
            +
Sbjct: 171 GQ 172

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 281 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 339 CE 340
            +
Sbjct: 171 GQ 172

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 281 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 339 CE 340
            +
Sbjct: 171 GQ 172

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 46/186 (24%)
Query: 157 EVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS 216
           ++K    K  +FT +    E  AHK  I ++ + P    LA+G  D  V IW     A  
Sbjct: 35  KIKLVSVKYDDFTLIDVLDE-TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA-- 91
Query: 217 CKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW 276
                                             D  F+++   L  + GH+ +V  +AW
Sbjct: 92  ----------------------------------DRTFEMD--LLAIIEGHENEVKGVAW 115
Query: 277 SNSNYLL-SCSMDKTVRMWQVGCN----QCLNVFDHHNY-VTCVQFNPIDDNYFISGSID 330
           SN  Y L +CS DK+V +W+   +    +C++V   H+  V  V ++P  +    S S D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYD 174
Query: 331 GKVRIW 336
             VRIW
Sbjct: 175 DTVRIW 180

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 185 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS--NAXXXXXXXXXXXS 242
           W L ++P G  LAS G D  +RIW     +  CKS   +G   +               +
Sbjct: 20  WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN-- 299
           S        +  Q +   +  L GH+ +V  +AW+ S N L +CS DK+V +W+V     
Sbjct: 80  SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
Query: 300 -QCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW 336
            +C++V + H   V  V ++P       S S D  V+++
Sbjct: 140 YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY 177

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 196 LASGGEDGVVRIWH-----VTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIP 250
           +AS   DG VR+W      + +V  + + F +   + S              + VP+   
Sbjct: 32  VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 310
                  E PL  L GH+G+V  L++ +   ++S S DKT ++W+ G +   N+  H+  
Sbjct: 92  SG-----EDPLYTLIGHQGNVCSLSFQD-GVVISGSWDKTAKVWKEG-SLVYNLQAHNAS 144
Query: 311 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGS 369
           V   +     +N F++ S D  +++W   +K +  ++ +  DV+  +  + DG       
Sbjct: 145 VWDAKVVSFSENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDG------- 196
Query: 370 ITGTCHFYKASGNDLKLEKVDFH 392
                HF   S ND  ++ VD H
Sbjct: 197 -----HFISCS-NDGLIKLVDXH 213

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 26/204 (12%)
Query: 179  AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 238
             HK  +  ++F+ DG+ L S  ED V+++W+           T D  F            
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1058
Query: 239  XXXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 293
                S +     D   +    I     ++   H+G VL  A S ++    S S DKT ++
Sbjct: 1059 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Query: 294  WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352
            W       L+    HN  V C  F+ +D     +G  +G++RIW V + +++       V
Sbjct: 1119 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1177
Query: 353  ----------ISAICYIPDGKGFI 366
                      ++ +C+ PD K  +
Sbjct: 1178 EEGTATHGGWVTDVCFSPDSKTLV 1201

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 26/204 (12%)
Query: 179  AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 238
             HK  +  ++F+ DG+ L S  ED V+++W+           T D  F            
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1051
Query: 239  XXXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 293
                S +     D   +    I     ++   H+G VL  A S ++    S S DKT ++
Sbjct: 1052 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111
Query: 294  WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352
            W       L+    HN  V C  F+ +D     +G  +G++RIW V + +++       V
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170
Query: 353  ----------ISAICYIPDGKGFI 366
                      ++ +C+ PD K  +
Sbjct: 1171 EEGTATHGGWVTDVCFSPDSKTLV 1194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	626
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.72
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.7
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.69
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.59
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.55
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.55
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.52
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.51
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.5
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.46
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.46
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.43
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.35
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.35
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.31
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.31
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.3
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.28
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.27
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.23
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.23
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.22
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.21
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.19
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.17
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.05
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.05
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.03
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.93
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.85
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.8
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.79
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.76
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.75
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.73
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.73
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.73
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.72
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.7
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.68
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.64
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.63
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.63
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.62
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.6
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.58
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.57
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.54
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.53
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.53
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.51
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.49
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.47
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.47
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.44
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.43
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.4
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.36
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.35
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.34
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.32
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.3
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.28
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.26
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.24
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.23
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.19
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.19
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.15
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.13
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.11
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.04
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.01
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.94
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.93
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.93
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.92
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.9
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.89
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.87
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.86
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.79
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.74
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.73
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.72
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.62
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.61
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.58
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.53
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.47
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.41
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.38
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.37
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.35
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.34
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.3
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.29
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.27
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.25
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.2
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.17
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.14
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.05
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.0
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.96
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.89
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.87
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.8
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.77
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.6
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.56
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.49
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.38
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.38
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.35
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.21
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.2
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.13
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.02
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.96
3ott_A	758	Two-component system sensor histidine kinase; beta	95.95
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.9
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.81
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.69
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.51
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.49
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.19
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.14
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	94.76
3ott_A	758	Two-component system sensor histidine kinase; beta	94.71
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.11
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.0
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.96
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.84
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.74
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.47
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.37
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.04
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.68
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.13
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.62
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.3
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.94
2rr3_B	47	OSBP, oxysterol-binding protein 1; lipid transport	89.27
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.19
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.96
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.79
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.56
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.72
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	84.19
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	83.5
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	83.06
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	82.49
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	80.59

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.3e-46  Score=412.88  Aligned_cols=409  Identities=17%  Similarity=0.192  Sum_probs=296.2

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcc-------------eeeeecCCCCCccCCCCCeeeec
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA-------------SCKSFTDDGGFGSNAKEGKIKFG  238 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  238 (626)
                      ...++|.+|.+.|++++|+|+|++||+|+.||+|+|||+.++..             ....|++++..+.....+.    
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~----  125 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR----  125 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS----
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCC----
Confidence            45567889999999999999999999999999999999865332             2334444444332221110    


Q ss_pred             CCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEE
Q 006909          239 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ  315 (626)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~  315 (626)
                         .....+.    +|+ .......+.+|...|++++|+|++  .|++|+.|++|++||..++++...+. |...|.+++
T Consensus       126 ---~~~~~v~----~wd-~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~  197 (611)
T 1nr0_A          126 ---ERFGHVF----LFD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR  197 (611)
T ss_dssp             ---SCSEEEE----ETT-TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred             ---CceeEEE----Eee-CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEE
Confidence               0001111    122 134566788999999999999986  59999999999999999998888875 999999999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec--------cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909          316 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  387 (626)
Q Consensus       316 ~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~--------~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~  387 (626)
                      |+| ++++|++|+.|++|++||+.+++.....        .|...|.+++|+|+|++|++++.|++|++||+.+.+....
T Consensus       198 fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~  276 (611)
T 1nr0_A          198 YNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT  276 (611)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeee
Confidence            999 9999999999999999999888766543        6899999999999999999999999999999987654322


Q ss_pred             EEe------------------------------------eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          388 KVD------------------------------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       388 ~~~------------------------------------~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      ...                                    .......|...|++++|+|+| .+|++++.|++|++||+.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCC
Confidence            100                                    001123567899999999998 7999999999999999753


Q ss_pred             ceeeeee-------------------------------------------------------------------------
Q 006909          432 VIHKFKG-------------------------------------------------------------------------  438 (626)
Q Consensus       432 ~~~~~~~-------------------------------------------------------------------------  438 (626)
                      .......                                                                         
T Consensus       356 ~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~  435 (611)
T 1nr0_A          356 GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA  435 (611)
T ss_dssp             CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred             CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence            2110000                                                                         


Q ss_pred             ---------cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCccc
Q 006909          439 ---------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQ  509 (626)
Q Consensus       439 ---------~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l  509 (626)
                               ..+...+.+++|+|+|++|++|+.|++|++||+.+......         ....+.+.+.+++|+|+|..|
T Consensus       436 ~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~---------~~~~h~~~v~~v~fspdg~~l  506 (611)
T 1nr0_A          436 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV---------KTIVHPAEITSVAFSNNGAFL  506 (611)
T ss_dssp             EEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE---------EEEECSSCEEEEEECTTSSEE
T ss_pred             EEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee---------eccCCCCceEEEEECCCCCEE
Confidence                     00224567899999999999999999999999976421000         001223445566666666665


Q ss_pred             ccccCCCccccCccccccCCCC-----cccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHH
Q 006909          510 KSLCSSSLRDCSQKWDNLETAP-----WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ  584 (626)
Q Consensus       510 ~~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  584 (626)
                      +..+.+   +.+.+|+......     ....|...|.+++|+|||++|++++. |+.|++|++.++.          ...
T Consensus       507 as~s~d---~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~-D~~v~lW~~~~~~----------~~~  572 (611)
T 1nr0_A          507 VATDQS---RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKPS----------DHP  572 (611)
T ss_dssp             EEEETT---SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCTT----------SCC
T ss_pred             EEEcCC---CCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC-CCcEEEEECCCcc----------ccc
Confidence            554433   3345555533111     12337778999999999999999998 8999999998762          001


Q ss_pred             -hhhccC-Cccc--cccccccceEEEEecCCceEeeeee
Q 006909          585 -QQCLNN-VDDV--RAISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       585 -~~~~~~-~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                       .....| ...+  .++++ +|+ |||||.||+||+|++
T Consensus       573 ~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          573 IIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             EEETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEEC
T ss_pred             chhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEec
Confidence             112223 2223  34555 788 999999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.2e-45  Score=380.95  Aligned_cols=379  Identities=19%  Similarity=0.330  Sum_probs=248.7

Q ss_pred             hhccccccceeeeeecc--ccccccccccccCCC----Cc-ccccChhhHHHHHHHHHHhhccccchhccccCCCCCCCC
Q 006909           79 ELEQDQMNECVVTLEGE--SNGFSQSVDKFENPF----PE-CKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKP  151 (626)
Q Consensus        79 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (626)
                      .|.++|++++++.+.+|  +.+..+..+.|+.+.    ++ ......+.+++.|..+++++++..+... ..........
T Consensus         2 ~~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~-~~~~~~~~~~   80 (410)
T 1vyh_C            2 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELES-KLNEAKEEFT   80 (410)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHHHHH-HHHHHHHHHh
Confidence            37889999999999777  555666666666654    11 1122346788899999988776422111 0000000000


Q ss_pred             ccchhHhhhcccccccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCC
Q 006909          152 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK  231 (626)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  231 (626)
                      ........  .....+.+.......+.+|.++|++++|+|++++||+|+.||+|+|||+.+                   
T Consensus        81 ~~~~~~~~--~~~~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-------------------  139 (410)
T 1vyh_C           81 SGGPLGQK--RDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-------------------  139 (410)
T ss_dssp             -------------CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-------------------
T ss_pred             ccCCcccc--CCccccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------
Confidence            01111111  111122333445667889999999999999999999999999999999987                   


Q ss_pred             CCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCC
Q 006909          232 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHN  309 (626)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~  309 (626)
                                                ......+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |..
T Consensus       140 --------------------------~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  193 (410)
T 1vyh_C          140 --------------------------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH  193 (410)
T ss_dssp             --------------------------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSS
T ss_pred             --------------------------CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCC
Confidence                                      34567888999999999999987 89999999999999999999988874 889


Q ss_pred             CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeE
Q 006909          310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  388 (626)
Q Consensus       310 ~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~  388 (626)
                      .|.+++|+| ++++|++|+.|++|++||++++..+ .+.+|...|.++.++|+++++++|+.||+|++||+.+...... 
T Consensus       194 ~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~-  271 (410)
T 1vyh_C          194 NVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-  271 (410)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred             CEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE-
Confidence            999999999 9999999999999999999988765 4678899999999999999999999999999999988765332 


Q ss_pred             EeeccccccCCCCeEEEEEcCCC-------------------CcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEE
Q 006909          389 VDFHDRKKTSGNKITGIQFSRDE-------------------SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSAS  449 (626)
Q Consensus       389 ~~~~~~~~~~~~~i~~l~~s~~~-------------------~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  449 (626)
                            ...|...|.+++|+|++                   +.+|++++.|++|++||+.+.........|...|.+++
T Consensus       272 ------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~  345 (410)
T 1vyh_C          272 ------LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL  345 (410)
T ss_dssp             ------ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             ------ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEE
Confidence                  22345789999999962                   25899999999999999887665555556889999999


Q ss_pred             EcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC
Q 006909          450 FTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET  529 (626)
Q Consensus       450 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~  529 (626)
                      |+|+|++|++|+.|++|++||+.++...         .         .                                
T Consensus       346 ~~~~g~~l~s~s~D~~i~vwd~~~~~~~---------~---------~--------------------------------  375 (410)
T 1vyh_C          346 FHSGGKFILSCADDKTLRVWDYKNKRCM---------K---------T--------------------------------  375 (410)
T ss_dssp             ECSSSSCEEEEETTTEEEEECCTTSCCC---------E---------E--------------------------------
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceE---------E---------E--------------------------------
Confidence            9999999999999999999998753100         0         0                                


Q ss_pred             CCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909          530 APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV  567 (626)
Q Consensus       530 ~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~  567 (626)
                         +..|...|++++|+|++.++++++. |+.|++|+.
T Consensus       376 ---~~~h~~~v~~l~~~~~~~~l~sgs~-D~~i~vW~~  409 (410)
T 1vyh_C          376 ---LNAHEHFVTSLDFHKTAPYVVTGSV-DQTVKVWEC  409 (410)
T ss_dssp             ---EECCSSCEEEEEECSSSSCEEEEET-TSEEEEEC-
T ss_pred             ---EcCCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEeC
Confidence               1123345677788888888888888 789999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.3e-43  Score=386.03  Aligned_cols=379  Identities=16%  Similarity=0.134  Sum_probs=283.7

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .+.+.+.+++|+|||++||+++ ++.|+||++.+                                             .
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~---------------------------------------------~   49 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS---------------------------------------------L   49 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC---------------------------------------------S
T ss_pred             cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCC---------------------------------------------c
Confidence            5678899999999999999998 56999999976                                             3


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee--eEee------------------------------
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LNVF------------------------------  305 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~--~~~~------------------------------  305 (626)
                      .....+.+|...|++++|+|+| +|++|+.|++|+|||+.+++.  ...+                              
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            4567888999999999999998 899999999999999864321  1111                              


Q ss_pred             ---------------cCCCCeEEEEEeeCCCC-EEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEE
Q 006909          306 ---------------DHHNYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVG  368 (626)
Q Consensus       306 ---------------~~~~~v~~~~~~p~~~~-~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g  368 (626)
                                     .|...|++++|+| ++. .|++|+.|++|++||...++.. .+.+|...|.+++|+|+|++|++|
T Consensus       130 ~v~~wd~~~~~~~l~gh~~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~  208 (611)
T 1nr0_A          130 HVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST  208 (611)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEeeCCCCcceecCCCCCceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence                           2556677888888 554 6999999999999999887654 467899999999999999999999


Q ss_pred             ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee--ee----------
Q 006909          369 SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KF----------  436 (626)
Q Consensus       369 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--~~----------  436 (626)
                      +.|++|++||+.++...............|...|.+++|+|++ .+|++++.|++|++||+.+...  .+          
T Consensus       209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~  287 (611)
T 1nr0_A          209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ  287 (611)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred             ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCcccee
Confidence            9999999999987765322101001112567899999999998 7999999999999999764221  11          


Q ss_pred             -------------------------------eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC---Ccc
Q 006909          437 -------------------------------KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS---KQK  482 (626)
Q Consensus       437 -------------------------------~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~---~~~  482 (626)
                                                     ....|...|.+++|+|+|++|++++.|++|++||+.++.....   .+.
T Consensus       288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~  367 (611)
T 1nr0_A          288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA  367 (611)
T ss_dssp             EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred             EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence                                           1235788999999999999999999999999999987632111   011


Q ss_pred             CC-------------------------------------------ccceeeeccCC------------------------
Q 006909          483 NS-------------------------------------------VRSCEHFFSEG------------------------  495 (626)
Q Consensus       483 ~~-------------------------------------------~~~~~~~~~~g------------------------  495 (626)
                      ..                                           ....+.|+|+|                        
T Consensus       368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~  447 (611)
T 1nr0_A          368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI  447 (611)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred             ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence            00                                           11223344444                        


Q ss_pred             --cEEEEecCCCCcccccccCCCccccCccccccCCCC---cccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          496 --VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       496 --~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                        ...+++|+|+|..++..+.+   +.+++|+......   ....+...+.+++|||||+++++++. |++|++|++.++
T Consensus       448 ~~~v~~va~spdg~~lasgs~D---~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~-d~~v~~w~~~~~  523 (611)
T 1nr0_A          448 SYNSSCVALSNDKQFVAVGGQD---SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANN  523 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEEETT---SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGGGT
T ss_pred             CCCceEEEEeCCCCEEEEeCCC---CeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC-CCCEEEEEcCCC
Confidence              23467788888887766554   4577787643211   12456777999999999999999998 799999999873


Q ss_pred             CCCCCCChhhHHHHh--hhccCCccc--cccccccceEEEEecCCceEeeeeec
Q 006909          571 SDGYCQDPQQQRLQQ--QCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       571 ~~~~~~~~~~~~~~~--~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                      .          ....  ....|...+  .++++ ||++|||||.||+|++|++.
T Consensus       524 ~----------~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~  566 (611)
T 1nr0_A          524 F----------ELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMN  566 (611)
T ss_dssp             T----------EESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred             C----------ceeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECC
Confidence            1          1111  111133333  35666 89999999999999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.5e-42  Score=377.23  Aligned_cols=411  Identities=23%  Similarity=0.381  Sum_probs=299.3

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----------cceeeeecCCCCCccCCC-CCeeeecCC-
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV----------AASCKSFTDDGGFGSNAK-EGKIKFGKK-  240 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  240 (626)
                      +.++|.+|++.|++++|+|||++||+|+.|++|+|||+...          ...+..|++++..+.... ++.+.++.. 
T Consensus        49 ~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~  128 (577)
T 2ymu_A           49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  128 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccc
Confidence            45678899999999999999999999999999999997532          123445555554332211 111111100 


Q ss_pred             ----------------------------------------C----------------------CCCceeecCC---cccc
Q 006909          241 ----------------------------------------K----------------------SSHVPVVIPD---EVFQ  255 (626)
Q Consensus       241 ----------------------------------------~----------------------~~~~~~~~~~---~~~~  255 (626)
                                                              .                      .........+   .+|+
T Consensus       129 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~  208 (577)
T 2ymu_A          129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  208 (577)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             cceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEe
Confidence                                                    0                      0000000001   2455


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                      .....+..+.+|...|.+++|+|++ +|++++.|+.|++||.. ++.+..+ .|...|.+++|+| ++..+++++.|+.|
T Consensus       209 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i  286 (577)
T 2ymu_A          209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTV  286 (577)
T ss_dssp             TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             CCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEE
Confidence            5566677888999999999999998 89999999999999975 4555555 5889999999999 99999999999999


Q ss_pred             EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      ++||........+.+|...|.+++|+|+++.+++++.||.|++||..+....  .+      ..+...+.+++|+|++ .
T Consensus       287 ~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~--~~------~~~~~~v~~~~~s~~g-~  357 (577)
T 2ymu_A          287 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--TL------TGHSSSVWGVAFSPDG-Q  357 (577)
T ss_dssp             EEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--EE------CCCSSCEEEEEECTTS-S
T ss_pred             EEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE--EE------eCCCCCEEEEEECCCC-C
Confidence            9999887777778889999999999999999999999999999998765432  11      2345789999999998 7


Q ss_pred             EEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec
Q 006909          414 RIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  492 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  492 (626)
                      ++++++.|+.|++||... ....+  ..|...|.+++|+|++++|++++.|+.|++||..........           .
T Consensus       358 ~l~~~~~dg~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~-----------~  424 (577)
T 2ymu_A          358 TIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT-----------G  424 (577)
T ss_dssp             EEEEEETTSEEEEEETTCCEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEE-----------C
T ss_pred             EEEEEeCCCEEEEEcCCCCEEEEe--cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEec-----------C
Confidence            999999999999999642 33333  347889999999999999999999999999997543211111           1


Q ss_pred             cCCcEEEEecCCCCcccccccCCCccccCccccccCC-CCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCC
Q 006909          493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDS  571 (626)
Q Consensus       493 ~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~  571 (626)
                      +.+.+.+++|+|++..++....+   +.+.+|+.... ...+..+...+.+++|+|||+++++++. |+.|++||.. + 
T Consensus       425 ~~~~v~~~~~s~d~~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~-d~~i~iw~~~-~-  498 (577)
T 2ymu_A          425 HSSSVWGVAFSPDDQTIASASDD---KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWNRN-G-  498 (577)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT---SEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEET-TSEEEEEETT-S-
T ss_pred             CCCCeEEEEECCCCCEEEEEcCC---CEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCEEEEEcCC-C-
Confidence            22344455556665555544333   23445553111 1234567778999999999999999988 7999999953 3 


Q ss_pred             CCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeecCccc
Q 006909          572 DGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYGLPI  624 (626)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~g~p~  624 (626)
                                +.......|...+  .++++ ||++||||+.||+|++|+.-|.++
T Consensus       499 ----------~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~~~~~~  542 (577)
T 2ymu_A          499 ----------QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLL  542 (577)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTSCEE
T ss_pred             ----------CEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeCCCCEE
Confidence                      1122233344333  35566 899999999999999999766543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.4e-42  Score=378.63  Aligned_cols=360  Identities=24%  Similarity=0.385  Sum_probs=284.1

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      ...+.+.+|.+.|.+++|+|+|++|++++.|+.|++|+...                                       
T Consensus       212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~---------------------------------------  252 (577)
T 2ymu_A          212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---------------------------------------  252 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS---------------------------------------
T ss_pred             cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC---------------------------------------
Confidence            34567889999999999999999999999999999998643                                       


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                             +.+..+.+|...|.+++|+|++ .|++++.|++|++||.. ++.+..+ .|...|.+++|+| ++.+|++++.
T Consensus       253 -------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~  323 (577)
T 2ymu_A          253 -------QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DGQTIASASD  323 (577)
T ss_dssp             -------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEET
T ss_pred             -------CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECC-CCCEEEEEeC
Confidence                   3466778999999999999998 89999999999999976 4555555 5899999999999 9999999999


Q ss_pred             CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      |++|++||+....+.....|...+.+++|+|+|+++++++.||.+++|+.....  ...+      ..|...|++++|+|
T Consensus       324 d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~--~~~~------~~~~~~v~~~~~s~  395 (577)
T 2ymu_A          324 DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTL------TGHSSSVRGVAFSP  395 (577)
T ss_dssp             TSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCE--EEEE------ECCSSCEEEEEECT
T ss_pred             CCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCE--EEEe------cCCCCCeEEEEECC
Confidence            999999999988888888999999999999999999999999999999965432  2222      22457899999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccce
Q 006909          410 DESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC  488 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  488 (626)
                      ++ ++|++++.|+.|++||... ....+.  .|...|.+++|+|++++|++++.|+.|++||..........        
T Consensus       396 dg-~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~--------  464 (577)
T 2ymu_A          396 DG-QTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT--------  464 (577)
T ss_dssp             TS-SCEEEEETTSEEEEECTTCCEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEE--------
T ss_pred             CC-CEEEEEeCCCEEEEEeCCCCEEEEec--CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEc--------
Confidence            98 7999999999999999642 333333  48889999999999999999999999999997653211111        


Q ss_pred             eeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC-CCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909          489 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV  567 (626)
Q Consensus       489 ~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~  567 (626)
                         .+.+.+.+++|+|++..++..+.+   +.+.+|+.... ...+..|...+++++|+|||++|++++. |+.|++||.
T Consensus       465 ---~~~~~v~~~~~spd~~~las~~~d---~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-dg~v~lwd~  537 (577)
T 2ymu_A          465 ---GHSSSVRGVAFSPDGQTIASASDD---KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWNR  537 (577)
T ss_dssp             ---CCSSCEEEEEECTTSCEEEEEETT---SEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEET-TSEEEEECT
T ss_pred             ---CCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC-cCEEEEEeC
Confidence               122334455555555555543332   23445553111 1234567778999999999999999988 799999996


Q ss_pred             ccCCCCCCCChhhHHHHhhhccCCcccc--ccccccceEEEEecCCceEeeee
Q 006909          568 TIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGLVIVTAGCDGMIKTFH  618 (626)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg~~ivt~g~Dg~Irvw~  618 (626)
                      . +           +.......|.+.+.  ++++ ||++|+|+|.||+|++|+
T Consensus       538 ~-~-----------~~~~~~~~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          538 N-G-----------QLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             T-S-----------CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             C-C-----------CEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence            3 3           12223344555543  4556 899999999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-39  Score=329.90  Aligned_cols=289  Identities=22%  Similarity=0.366  Sum_probs=238.1

Q ss_pred             ccccccccCcEEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          174 SQEIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspd----g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      .+.+++|.+.|++++|+|+    +.+||||+.|++|+||++.+...                                  
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~----------------------------------   70 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL----------------------------------   70 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE----------------------------------
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe----------------------------------
Confidence            3566799999999999985    66999999999999999875321                                  


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~  327 (626)
                               .....+.+|...|.+++|++++ .+++++.|++|++||+.+++.+..+. +...+.+++|+| ++++|++|
T Consensus        71 ---------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g  140 (321)
T 3ow8_A           71 ---------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATG  140 (321)
T ss_dssp             ---------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEE
T ss_pred             ---------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEE
Confidence                     1234678999999999999987 89999999999999999999988885 777899999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          328 SIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +.||.|++||+.+++.. .+..+...|.+++|+|+|++|++|+.||.|++||+.+++.... +      ..|..+|++++
T Consensus       141 ~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-~------~~h~~~v~~l~  213 (321)
T 3ow8_A          141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-L------EGHAMPIRSLT  213 (321)
T ss_dssp             CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-E------CCCSSCCCEEE
T ss_pred             cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-E------cccCCceeEEE
Confidence            99999999999887654 4567778899999999999999999999999999988764322 2      23457899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcc
Q 006909          407 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR  486 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  486 (626)
                      |+|++ .+|++++.|+.|++||+...........|...|.+++|+|++++|++++.|++|++||+.++.           
T Consensus       214 ~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~-----------  281 (321)
T 3ow8_A          214 FSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT-----------  281 (321)
T ss_dssp             ECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------
T ss_pred             EcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE-----------
Confidence            99997 799999999999999988665555556688999999999999999999999999999997641           


Q ss_pred             ceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909          487 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       487 ~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                                .+..                                +..+...+.+++|+|+|+++++++. |+.|++||
T Consensus       282 ----------~~~~--------------------------------~~~h~~~v~~v~~s~~g~~l~s~~~-d~~i~vwd  318 (321)
T 3ow8_A          282 ----------CVHT--------------------------------FFDHQDQVWGVKYNGNGSKIVSVGD-DQEIHIYD  318 (321)
T ss_dssp             ----------EEEE--------------------------------ECCCSSCEEEEEECTTSSEEEEEET-TCCEEEEE
T ss_pred             ----------EEEE--------------------------------EcCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEe
Confidence                      1000                                1122334566777788887888777 78888888


Q ss_pred             cc
Q 006909          567 VT  568 (626)
Q Consensus       567 ~~  568 (626)
                      .+
T Consensus       319 ~p  320 (321)
T 3ow8_A          319 CP  320 (321)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-39  Score=326.45  Aligned_cols=252  Identities=16%  Similarity=0.279  Sum_probs=219.5

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      +.+.++|++|.+.|++++|+|+|++||+|+.||+|+|||+.+                                      
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--------------------------------------   44 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET--------------------------------------   44 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--------------------------------------
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--------------------------------------
Confidence            345678899999999999999999999999999999999987                                      


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                             ...+..+.+|..+|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|.+++|+| ++.+|++|+
T Consensus        45 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs  116 (304)
T 2ynn_A           45 -------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGS  116 (304)
T ss_dssp             -------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEE
T ss_pred             -------CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEEC
Confidence                   33467788899999999999987 89999999999999999999988885 899999999999 999999999


Q ss_pred             CCCcEEEEeCCCCe-E-EEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          329 IDGKVRIWGVCEKR-V-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       329 ~dg~v~iwd~~~~~-~-~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      .|++|++||++++. + ..+.+|...|.+++|+| ++..|++|+.|++|++||+...........      .+...+..+
T Consensus       117 ~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~------~~~~~v~~~  190 (304)
T 2ynn_A          117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT------GQERGVNYV  190 (304)
T ss_dssp             TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC------CCTTCEEEE
T ss_pred             CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc------CCcCcEEEE
Confidence            99999999998763 3 34678999999999999 678999999999999999987654332211      223678999


Q ss_pred             EEcC--CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          406 QFSR--DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       406 ~~s~--~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      .|+|  ++ .+|++++.|++|++||+.+.........|...|..++|+|++++|++|+.||+|++||+.++.
T Consensus       191 ~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          191 DYYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             EECCSTTC-CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEcCCC-CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            9987  44 699999999999999988766555555688999999999999999999999999999998763

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5e-39  Score=327.87  Aligned_cols=287  Identities=17%  Similarity=0.337  Sum_probs=236.8

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      ....++|++|.+.|++++|+|++++|++|+.||+|+|||+.+                                      
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~--------------------------------------   86 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT--------------------------------------   86 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--------------------------------------
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--------------------------------------
Confidence            345678899999999999999999999999999999999887                                      


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe----eeEee-cCCCCeEEEEEeeCCCCEE
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVF-DHHNYVTCVQFNPIDDNYF  324 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~----~~~~~-~~~~~v~~~~~~p~~~~~l  324 (626)
                             ...+..+..|...|.+++|+|++ +|++++.|+.|++||+.++.    ....+ .|...|.++.|++ ++ .+
T Consensus        87 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l  157 (340)
T 1got_B           87 -------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN-QI  157 (340)
T ss_dssp             -------CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT-EE
T ss_pred             -------CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CC-cE
Confidence                   34466778899999999999988 89999999999999997653    33333 5899999999998 54 58


Q ss_pred             EEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          325 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      ++++.|++|++||+.+++... +..|...|.+++|+|+++++++|+.||.|++||+++......       ...|...|+
T Consensus       158 ~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~-------~~~h~~~v~  230 (340)
T 1got_B          158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-------FTGHESDIN  230 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE-------ECCCSSCEE
T ss_pred             EEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE-------EcCCcCCEE
Confidence            999999999999999887654 567899999999999999999999999999999987764322       223457899


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcceee--eeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK--FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  481 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~  481 (626)
                      +++|+|++ .+|++++.|++|++||++.....  +....+...|.+++|+|+|++|++|+.|+.|++||+.++.      
T Consensus       231 ~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~------  303 (340)
T 1got_B          231 AICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD------  303 (340)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------
T ss_pred             EEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc------
Confidence            99999997 79999999999999998754433  3222344579999999999999999999999999987631      


Q ss_pred             cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCC
Q 006909          482 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK  561 (626)
Q Consensus       482 ~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~  561 (626)
                                     .+..                                +.+|...|..++|+|||+++++++. |+.
T Consensus       304 ---------------~~~~--------------------------------~~~h~~~v~~~~~s~dg~~l~s~s~-D~~  335 (340)
T 1got_B          304 ---------------RAGV--------------------------------LAGHDNRVSCLGVTDDGMAVATGSW-DSF  335 (340)
T ss_dssp             ---------------EEEE--------------------------------EECCSSCEEEEEECTTSSCEEEEET-TSC
T ss_pred             ---------------EeeE--------------------------------eecCCCcEEEEEEcCCCCEEEEEcC-Ccc
Confidence                           0000                                1223445677788888888888888 788


Q ss_pred             CCCCC
Q 006909          562 LPLWD  566 (626)
Q Consensus       562 i~vwd  566 (626)
                      |++||
T Consensus       336 i~iWd  340 (340)
T 1got_B          336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99886

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.2e-39  Score=325.34  Aligned_cols=303  Identities=18%  Similarity=0.272  Sum_probs=246.0

Q ss_pred             cccccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      +.+..+|.+|.+.|++++|+|++ ++|+||+.|++|++|++......                                 
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~---------------------------------   53 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK---------------------------------   53 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------------------------------
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------------------------------
Confidence            45567899999999999999965 79999999999999998642110                                 


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                             ...++..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+ .|...|.+++|+| ++.+|++|
T Consensus        54 -------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~  125 (319)
T 3frx_A           54 -------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISG  125 (319)
T ss_dssp             -------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred             -------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEE
Confidence                   023467888999999999999998 8999999999999999999998887 4999999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC------CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          328 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~------g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +.|++|++||++...+..+.+|...|.++.++|.      +..+++++.|+.|++||+........       ...|...
T Consensus       126 s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~h~~~  198 (319)
T 3frx_A          126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-------FIGHNSN  198 (319)
T ss_dssp             ETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE-------ECCCCSC
T ss_pred             eCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-------ecCCCCc
Confidence            9999999999998888888899999999999985      45899999999999999987654322       2235689


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  481 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~  481 (626)
                      |++++|+|++ .+|++++.|+.|++||+.......... +...|.+++|+|++.+|++++.+ .+++|+++....     
T Consensus       199 v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~-----  270 (319)
T 3frx_A          199 INTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYL-----  270 (319)
T ss_dssp             EEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEE-----
T ss_pred             EEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCee-----
Confidence            9999999998 799999999999999988655444443 45689999999999999998855 599999875310     


Q ss_pred             cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCC
Q 006909          482 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK  561 (626)
Q Consensus       482 ~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~  561 (626)
                                       .-...+.-.                       .....+...+.+++|+|||++|++++. |+.
T Consensus       271 -----------------~~~~~~~~~-----------------------~~~~~~~~~v~~~~~spdg~~l~sg~~-Dg~  309 (319)
T 3frx_A          271 -----------------VDDLRPEFA-----------------------GYSKAAEPHAVSLAWSADGQTLFAGYT-DNV  309 (319)
T ss_dssp             -----------------EEEECCCCT-----------------------TCCGGGCCCEEEEEECTTSSEEEEEET-TSC
T ss_pred             -----------------eeccCcccc-----------------------ccccCcCcceeEEEECCCCCEEEEeec-Cce
Confidence                             000000000                       001122334677899999999999988 899


Q ss_pred             CCCCCcccC
Q 006909          562 LPLWDVTID  570 (626)
Q Consensus       562 i~vwd~~~~  570 (626)
                      |++||+.++
T Consensus       310 i~vWd~~t~  318 (319)
T 3frx_A          310 IRVWQVMTA  318 (319)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.1e-39  Score=381.48  Aligned_cols=387  Identities=18%  Similarity=0.294  Sum_probs=293.0

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      ..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+                                          
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~------------------------------------------  646 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET------------------------------------------  646 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------------------------------------------
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC------------------------------------------
Confidence            45679999999999999999999999999999999987                                          


Q ss_pred             cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeC-CCCEEEEEeCCC
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGSIDG  331 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~-~~~~l~s~s~dg  331 (626)
                         ...+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+|. ++.++++|+.|+
T Consensus       647 ---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~  723 (1249)
T 3sfz_A          647 ---GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF  723 (1249)
T ss_dssp             ---CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred             ---CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence               34567788999999999999998 99999999999999999999998884 8899999999983 345899999999


Q ss_pred             cEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEe--------------------
Q 006909          332 KVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD--------------------  390 (626)
Q Consensus       332 ~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~--------------------  390 (626)
                      .|++||+.+++.. ...+|...|++++|+|+++++++++.||.|++||+.+.........                    
T Consensus       724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  803 (1249)
T 3sfz_A          724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC  803 (1249)
T ss_dssp             CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred             eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence            9999999988765 4678999999999999999999999999999999976643221100                    


Q ss_pred             ----------------------------eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCC
Q 006909          391 ----------------------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS  442 (626)
Q Consensus       391 ----------------------------~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  442 (626)
                                                  .......|...|.+++|+|++ .++++++.|+.|++||..+.........|.
T Consensus       804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~  882 (1249)
T 3sfz_A          804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHL  882 (1249)
T ss_dssp             CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred             EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeeecCCCc
Confidence                                        000011456789999999997 799999999999999998776666667789


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCC--------------------------------------CCccCC
Q 006909          443 GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS--------------------------------------SKQKNS  484 (626)
Q Consensus       443 ~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~--------------------------------------~~~~~~  484 (626)
                      ..|.+++|+|+|++|++++.|+.|++|++.+.....                                      ......
T Consensus       883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  962 (1249)
T 3sfz_A          883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA  962 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence            999999999999999999999999999965310000                                      000011


Q ss_pred             ccceeeeccCCcEEE-------------------------------EecCCCCcccccccCCC-----------------
Q 006909          485 VRSCEHFFSEGVSVA-------------------------------VQWPGIGTEQKSLCSSS-----------------  516 (626)
Q Consensus       485 ~~~~~~~~~~g~~~a-------------------------------v~~s~~~~~l~~~~~~~-----------------  516 (626)
                      ...+..++|++..++                               ++|+|++..++..+.+.                 
T Consensus       963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1042 (1249)
T 3sfz_A          963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA 1042 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBC
T ss_pred             cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEec
Confidence            122223333332222                               33444444433322221                 


Q ss_pred             --------------------ccccCccccccCCCC--cccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCC
Q 006909          517 --------------------LRDCSQKWDNLETAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGY  574 (626)
Q Consensus       517 --------------------~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~  574 (626)
                                          .++.+.+|+......  .+..+...+.+++|+|||+++++++. |+.|++||+.++.   
T Consensus      1043 ~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~-d~~v~iwd~~~~~--- 1118 (1249)
T 3sfz_A         1043 HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA-DKTAKIWSFDLLS--- 1118 (1249)
T ss_dssp             CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECC-SSCCCEECSSSSS---
T ss_pred             CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcC-CCcEEEEECCCcc---
Confidence                                122344455433222  34456777999999999999999998 7999999998872   


Q ss_pred             CCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeec
Q 006909          575 CQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                              +......|.+.+  .++++ +|.+||||+.||+|++|+..
T Consensus      1119 --------~~~~l~~h~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A         1119 --------PLHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp             --------CSBCCCCCSSCEEEEEECS-SSSEEEEEETTSCCCEEESS
T ss_pred             --------eeeeeccCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence                    122233344433  34556 89999999999999999964

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.8e-38  Score=321.76  Aligned_cols=287  Identities=16%  Similarity=0.288  Sum_probs=235.8

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      ...++|++|.+.|++++|+|++++||||+.||+|+|||..++                                      
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--------------------------------------   96 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--------------------------------------   96 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------------------------------------
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------------------------------------
Confidence            456788999999999999999999999999999999998762                                      


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC------eeeEee-cCCCCeEEEEEeeCCCCE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN------QCLNVF-DHHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~------~~~~~~-~~~~~v~~~~~~p~~~~~  323 (626)
                             .....+..|...|.+++|+|++ .|++++.|+.+++|++...      .....+ .|...|.+++|+| ++..
T Consensus        97 -------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~  168 (354)
T 2pbi_B           97 -------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQ  168 (354)
T ss_dssp             -------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSE
T ss_pred             -------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCE
Confidence                   3355667788999999999998 9999999999999998643      122233 5999999999999 9999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEee--CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          324 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      |++++.|++|++||+.+++.+. +.+|...|.+++|+|  +|++|++|+.||.|++||++++..... +      ..|..
T Consensus       169 l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-~------~~h~~  241 (354)
T 2pbi_B          169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA-F------ETHES  241 (354)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE-E------CCCSS
T ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE-e------cCCCC
Confidence            9999999999999999887654 667899999999988  578999999999999999998765322 2      23458


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee--eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCC
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  478 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~  478 (626)
                      .|++++|+|++ .+|++++.|++|++||++....  .+....+...+.+++|+|+|++|++|+.|+.|++||+.++.   
T Consensus       242 ~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---  317 (354)
T 2pbi_B          242 DVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS---  317 (354)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---
T ss_pred             CeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc---
Confidence            99999999997 7999999999999999875433  33333344578999999999999999999999999987641   


Q ss_pred             CCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCC
Q 006909          479 SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWP  558 (626)
Q Consensus       479 ~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~  558 (626)
                                        .+..                                +.+|...+.+++|+|||++++++++ 
T Consensus       318 ------------------~~~~--------------------------------l~~h~~~v~~l~~spdg~~l~sgs~-  346 (354)
T 2pbi_B          318 ------------------RVSI--------------------------------LFGHENRVSTLRVSPDGTAFCSGSW-  346 (354)
T ss_dssp             ------------------EEEE--------------------------------ECCCSSCEEEEEECTTSSCEEEEET-
T ss_pred             ------------------eEEE--------------------------------EECCCCcEEEEEECCCCCEEEEEcC-
Confidence                              1100                                1223445677788888888888888 


Q ss_pred             CCCCCCCC
Q 006909          559 AEKLPLWD  566 (626)
Q Consensus       559 d~~i~vwd  566 (626)
                      |+.|++|+
T Consensus       347 D~~v~vW~  354 (354)
T 2pbi_B          347 DHTLRVWA  354 (354)
T ss_dssp             TSEEEEEC
T ss_pred             CCCEEecC
Confidence            78888885

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4e-38  Score=321.85  Aligned_cols=305  Identities=21%  Similarity=0.330  Sum_probs=239.1

Q ss_pred             cccccccccccC-cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          171 LYTSQEIQAHKG-CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       171 ~~~~~~l~~H~~-~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      +.+.++|.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++...+                                
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------------------------   52 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------------------------   52 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------------------------
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------------------------
Confidence            345678889988 99999999999999999999999999987632110                                


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCCCCEEE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~~~~l~  325 (626)
                                ......+|...|.+++|+|++ +|++|+.|++|++||+..+.  ++..+ .|...|.+++|+| ++++|+
T Consensus        53 ----------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~  121 (345)
T 3fm0_A           53 ----------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLA  121 (345)
T ss_dssp             ----------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             ----------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEE
Confidence                      012235899999999999988 89999999999999998764  45555 4899999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          326 SGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +|+.|++|++||+..+.    ...+..|...|.+++|+|++++|++++.|+.|++||......... ..    ...|...
T Consensus       122 s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~----~~~h~~~  196 (345)
T 3fm0_A          122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC-AT----LEGHEST  196 (345)
T ss_dssp             EEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE-EE----ECCCSSC
T ss_pred             EEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE-EE----ecCCCCc
Confidence            99999999999998753    234567889999999999999999999999999999987653221 11    2334589


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-----------------eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGVDV-----------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-----------------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      |++++|+|+| .+|++++.|++|+|||....                 ...+.+ .|...|.+++|+|++..|++++.|+
T Consensus       197 v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~  274 (345)
T 3fm0_A          197 VWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDD  274 (345)
T ss_dssp             EEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTS
T ss_pred             eEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCC
Confidence            9999999998 79999999999999984210                 111111 2778999999999999999999999


Q ss_pred             cEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCcc
Q 006909          465 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSW  544 (626)
Q Consensus       465 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  544 (626)
                      .|++|+......+...                ...+.        .                    .....|...|.+++
T Consensus       275 ~i~vw~~~~~~~~~~~----------------~~~~~--------~--------------------~~~~~h~~~V~~v~  310 (345)
T 3fm0_A          275 AIRVFQEDPNSDPQQP----------------TFSLT--------A--------------------HLHQAHSQDVNCVA  310 (345)
T ss_dssp             CEEEEEECTTSCTTSC----------------CEEEE--------E--------------------EETTSSSSCEEEEE
T ss_pred             eEEEEEeCCCCCccee----------------eEEEE--------e--------------------eecccccCcEeEeE
Confidence            9999998764211100                00000        0                    00124555688889


Q ss_pred             ccCCCC-cccccCCCCCCCCCCCcccC
Q 006909          545 FSNDGP-CRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       545 ~s~dg~-~l~s~~~~d~~i~vwd~~~~  570 (626)
                      |+|++. ++++++. |+.|++|++.+.
T Consensus       311 ~~p~~~~~laS~s~-Dg~v~~W~~~~~  336 (345)
T 3fm0_A          311 WNPKEPGLLASCSD-DGEVAFWKYQRP  336 (345)
T ss_dssp             ECSSSTTEEEEEET-TSCEEEEEECC-
T ss_pred             EeCCCceEEEEcCC-CCcEEEEEecCC
Confidence            999885 7888888 899999999876

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.6e-39  Score=334.23  Aligned_cols=299  Identities=18%  Similarity=0.334  Sum_probs=242.0

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      ...+.++|++|.+.|++++|+|+|++||||+.||+|+|||+.+                                     
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-------------------------------------   97 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-------------------------------------   97 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-------------------------------------
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------------------------
Confidence            4556788999999999999999999999999999999999987                                     


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe-------eeEee-cCCCCeEEEEEeeCC
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPID  320 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~-------~~~~~-~~~~~v~~~~~~p~~  320 (626)
                              ......+.+|...|.+++|+|++ +|++|+.|+.|++||+.+..       ....+ +|...|.++.|.|.+
T Consensus        98 --------~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~  169 (380)
T 3iz6_a           98 --------SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ  169 (380)
T ss_dssp             --------TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS
T ss_pred             --------CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCC
Confidence                    33466778899999999999998 99999999999999986532       12223 588999999999955


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEe------ccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeecc
Q 006909          321 DNYFISGSIDGKVRIWGVCEKRVVDW------ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  393 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~~~~~------~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~  393 (626)
                      +..|++|+.|++|++||+.+++....      .+|...|.+++|+| ++++|++|+.||+|++||++........+    
T Consensus       170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~----  245 (380)
T 3iz6_a          170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY----  245 (380)
T ss_dssp             SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE----
T ss_pred             CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE----
Confidence            67899999999999999999887653      46788999999987 88999999999999999997543333222    


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee--eeecC-----CCCCeEEEEEcCCCCEEEEEeCCccE
Q 006909          394 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK--FKGLP-----KSGSQMSASFTTTGKHIISIGDDCRV  466 (626)
Q Consensus       394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~-----~~~~v~~~~~sp~g~~l~s~s~dg~I  466 (626)
                        ..|...|++++|+|++ .+|++++.|++|++||+++....  +....     +...|.+++|+|+|++|++|+.||.|
T Consensus       246 --~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  322 (380)
T 3iz6_a          246 --HGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC  322 (380)
T ss_dssp             --CCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred             --CCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence              2345899999999997 79999999999999998865433  22211     12348999999999999999999999


Q ss_pred             EEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCcccc
Q 006909          467 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFS  546 (626)
Q Consensus       467 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s  546 (626)
                      ++||+..+..                    ...+.                             .....|...|..++|+
T Consensus       323 ~vwd~~~~~~--------------------~~~~~-----------------------------~~~~~h~~~v~~l~~s  353 (380)
T 3iz6_a          323 YVWDTLLAEM--------------------VLNLG-----------------------------TLQNSHEGRISCLGLS  353 (380)
T ss_dssp             EEEETTTCCE--------------------EEEEC-----------------------------CSCSSCCCCCCEEEEC
T ss_pred             EEEECCCCce--------------------EEEEe-----------------------------cccCCCCCceEEEEEC
Confidence            9999865310                    00000                             0012455678899999


Q ss_pred             CCCCcccccCCCCCCCCCCCcccC
Q 006909          547 NDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       547 ~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      |||++++++++ |+.|++|++...
T Consensus       354 ~dg~~l~sgs~-D~~i~iW~~~~~  376 (380)
T 3iz6_a          354 SDGSALCTGSW-DKNLKIWAFSGH  376 (380)
T ss_dssp             SSSSEEEEECT-TSCEEEEECCSS
T ss_pred             CCCCEEEEeeC-CCCEEEEecCCC
Confidence            99999999999 899999998754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-37  Score=317.65  Aligned_cols=310  Identities=18%  Similarity=0.226  Sum_probs=239.6

Q ss_pred             cccccccccccCcEEEEEE-----cC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCC
Q 006909          171 LYTSQEIQAHKGCIWTLKF-----SP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  244 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~f-----sp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (626)
                      ..+.++|++|++.|++++|     ++ ++++||||+.|++|+|||+.+.....                           
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~---------------------------   63 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG---------------------------   63 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS---------------------------
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc---------------------------
Confidence            3456788999999999999     77 99999999999999999987532100                           


Q ss_pred             ceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCC
Q 006909          245 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN  322 (626)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~  322 (626)
                                 ....+...+.+|...|.+++|+|++ ++++++.|++|++||+.+++++..+. |...|.+++|+| +++
T Consensus        64 -----------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~  131 (343)
T 2xzm_R           64 -----------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNR  131 (343)
T ss_dssp             -----------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STT
T ss_pred             -----------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCC
Confidence                       0023456788999999999999987 89999999999999999999988874 999999999999 999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEec---cCCCCeEEEEEeeCC----------CEEEEEecCCcEEEEEcCCCceeeeEE
Q 006909          323 YFISGSIDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDG----------KGFIVGSITGTCHFYKASGNDLKLEKV  389 (626)
Q Consensus       323 ~l~s~s~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g----------~~l~~g~~dg~i~i~d~~~~~~~~~~~  389 (626)
                      +|++++.|++|++||+.........   .|...|.+++|+|++          .++++++.||.|++||... .. ...+
T Consensus       132 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~-~~~~  209 (343)
T 2xzm_R          132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI-RYTF  209 (343)
T ss_dssp             EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE-EEEE
T ss_pred             EEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce-eEEE
Confidence            9999999999999999865554433   678899999999987          7899999999999999432 21 1122


Q ss_pred             eeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909          390 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  469 (626)
Q Consensus       390 ~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw  469 (626)
                            ..|...|++++|+|+| .+|++++.|+.|++||+...........+...|.+++|+|++++++++ .|+.|++|
T Consensus       210 ------~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw  281 (343)
T 2xzm_R          210 ------KAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIF  281 (343)
T ss_dssp             ------ECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEE
T ss_pred             ------cCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEE
Confidence                  2345789999999998 799999999999999984322221222245679999999999988765 57889999


Q ss_pred             ECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCC
Q 006909          470 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG  549 (626)
Q Consensus       470 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg  549 (626)
                      ++.+.....         ...+.           ...  +..                  ......+...+.+++|+|+|
T Consensus       282 ~~~~~~~~~---------~~~~~-----------~~~--~~~------------------~~~~~~~~~~v~~~~~sp~g  321 (343)
T 2xzm_R          282 NLMTQSKAP---------VCTIE-----------AEP--ITK------------------AEGQKGKNPQCTSLAWNALG  321 (343)
T ss_dssp             ESSSCCSCS---------EEECC-----------CCS--GGG------------------BTTBCCSCCCEEEEEECSSS
T ss_pred             EeCCCCCCc---------eEEee-----------cCc--chh------------------hhhhcCCCCceEEEEECCCC
Confidence            998642110         00000           000  000                  00122345567889999999


Q ss_pred             CcccccCCCCCCCCCCCcccC
Q 006909          550 PCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       550 ~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      +++++++. |+.|++|++.++
T Consensus       322 ~~l~sg~~-Dg~v~~w~~~~g  341 (343)
T 2xzm_R          322 KKLFAGFT-DGVIRTFSFETS  341 (343)
T ss_dssp             CCEEEEET-TSEEEEEEEEEE
T ss_pred             CeEEEecC-CceEEEEEEEcc
Confidence            99999988 899999998775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.8e-38  Score=357.06  Aligned_cols=343  Identities=14%  Similarity=0.199  Sum_probs=261.9

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      .+.+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+                                       
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~---------------------------------------   44 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET---------------------------------------   44 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC---------------------------------------
Confidence            45677889999999999999999999999999999999987                                       


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                            +..+..+.+|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|++++|+| ++.+|++++.
T Consensus        45 ------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  117 (814)
T 3mkq_A           45 ------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSD  117 (814)
T ss_dssp             ------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEET
T ss_pred             ------CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcC
Confidence                  34467788999999999999987 89999999999999999999988885 899999999999 9999999999


Q ss_pred             CCcEEEEeCCCC-eE-EEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          330 DGKVRIWGVCEK-RV-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       330 dg~v~iwd~~~~-~~-~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      ||.|++||+.++ .. .....|...|.+++|+| +++.+++++.||.|++||+.+.........      .+...+.+++
T Consensus       118 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~------~~~~~v~~~~  191 (814)
T 3mkq_A          118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT------GQERGVNYVD  191 (814)
T ss_dssp             TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC------CCTTCCCEEE
T ss_pred             CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec------CCCCCEEEEE
Confidence            999999999876 33 34667889999999999 899999999999999999987665433221      1236899999


Q ss_pred             EcC--CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC-CccC
Q 006909          407 FSR--DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-KQKN  483 (626)
Q Consensus       407 ~s~--~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~  483 (626)
                      |+|  ++ .++++++.||.|++||..+.........|...|.+++|+|++++|++++.||.|++||+.++..... ....
T Consensus       192 ~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  270 (814)
T 3mkq_A          192 YYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL  270 (814)
T ss_dssp             ECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred             EEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence            999  76 7999999999999999876655555555888999999999999999999999999999987632211 1122


Q ss_pred             CccceeeeccCCc--EEEEe------------------cCCCCcccccccCCCcccc------CccccccCCC------C
Q 006909          484 SVRSCEHFFSEGV--SVAVQ------------------WPGIGTEQKSLCSSSLRDC------SQKWDNLETA------P  531 (626)
Q Consensus       484 ~~~~~~~~~~~g~--~~av~------------------~s~~~~~l~~~~~~~~~~~------~~~w~~~~~~------~  531 (626)
                      ....++.++|+|.  .++.+                  ++|++..++..........      ...|......      .
T Consensus       271 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (814)
T 3mkq_A          271 ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTK  350 (814)
T ss_dssp             SSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCE
T ss_pred             CcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeee
Confidence            3445566777765  23332                  2223333332111110000      0011111110      1


Q ss_pred             cccCCCcccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909          532 WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  569 (626)
Q Consensus       532 ~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~  569 (626)
                      ....+...+..++|+|||+++++++  ++.+.+|++..
T Consensus       351 ~~~~~~~~~~~~~~spdg~~la~~~--~~~~~i~~~~~  386 (814)
T 3mkq_A          351 ELGSVDVFPQSLAHSPNGRFVTVVG--DGEYVIYTALA  386 (814)
T ss_dssp             EECCCSSCCSEEEECTTSSEEEEEE--TTEEEEEETTT
T ss_pred             cCCCCccCCceeEECCCCCEEEEec--CCEEEEEECcc
Confidence            1123344578899999999888877  57888888654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.1e-37  Score=340.32  Aligned_cols=413  Identities=17%  Similarity=0.153  Sum_probs=289.4

Q ss_pred             ccccccccccCc-EEEEEEcC--CCCEEEEEeCCCcEEEEEcCCC--------cc-----------eeeeecCCCCCccC
Q 006909          172 YTSQEIQAHKGC-IWTLKFSP--DGRYLASGGEDGVVRIWHVTSV--------AA-----------SCKSFTDDGGFGSN  229 (626)
Q Consensus       172 ~~~~~l~~H~~~-V~~l~fsp--dg~~Latgs~Dg~i~iwd~~~~--------~~-----------~~~~~~~~~~~~~~  229 (626)
                      ...+.+.+|.+. |++++|+|  ++++||+|+.||.|+|||+.++        ..           ....|.+++..+..
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            456678899999 99999999  9999999999999999999644        11           22233333333222


Q ss_pred             CCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-
Q 006909          230 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-  306 (626)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-  306 (626)
                      ....       ......+.    +|+ ....+..+.+|...|.+++|+|++  .+++++.|+.|++||+.+++.+..+. 
T Consensus       134 ~~~~-------~~~~~~v~----~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~  201 (615)
T 1pgu_A          134 VGEG-------RDNFGVFI----SWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT  201 (615)
T ss_dssp             EECC-------SSCSEEEE----ETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred             eccC-------CCCccEEE----EEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc
Confidence            1111       00001111    122 245677888999999999999987  79999999999999999999988886 


Q ss_pred             CCC---CeEEEEEeeCC-CCEEEEEeCCCcEEEEeCCCCeEEEec-----cCCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 006909          307 HHN---YVTCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVDWA-----DVRDVISAICYIPDGKGFIVGSITGTCHFY  377 (626)
Q Consensus       307 ~~~---~v~~~~~~p~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~-----~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~  377 (626)
                      |..   .|.+++|+| + +++|++++.||.|++||+.+++.....     .|...|.+++|+ ++++|++++.||.|++|
T Consensus       202 ~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~w  279 (615)
T 1pgu_A          202 HHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVW  279 (615)
T ss_dssp             SSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEE
T ss_pred             cCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEE
Confidence            777   899999999 8 999999999999999999998877765     889999999999 99999999999999999


Q ss_pred             EcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCC--------------
Q 006909          378 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG--------------  443 (626)
Q Consensus       378 d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--------------  443 (626)
                      |+.+.+.... +..+  .......+.++.|. ++ .++++++.|+.|++||+...........|..              
T Consensus       280 d~~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~  354 (615)
T 1pgu_A          280 DVTTSKCVQK-WTLD--KQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGS  354 (615)
T ss_dssp             ETTTTEEEEE-EECC--TTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEE
T ss_pred             ECCCCcEEEE-EcCC--CCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEEC
Confidence            9997765332 2222  12223578888886 54 6999999999999999875433333333444              


Q ss_pred             -------------------CeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCC--------------------------
Q 006909          444 -------------------SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS--------------------------  478 (626)
Q Consensus       444 -------------------~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~--------------------------  478 (626)
                                         .|.+++| +++.+|++++.|+.|++|++.+.....                          
T Consensus       355 ~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  433 (615)
T 1pgu_A          355 YDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ  433 (615)
T ss_dssp             TTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEE
T ss_pred             CCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEe
Confidence                               4444444 335566666666666666654311000                          


Q ss_pred             --CC-------c--------------------cCCcc--------c--eeeeccCCcEEEEecCCCCcccccccCCCccc
Q 006909          479 --SK-------Q--------------------KNSVR--------S--CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD  519 (626)
Q Consensus       479 --~~-------~--------------------~~~~~--------~--~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~  519 (626)
                        ..       +                    .+.+.        .  .....+.+.+.+++|+|++..++....+   +
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---g  510 (615)
T 1pgu_A          434 SFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM---G  510 (615)
T ss_dssp             TTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT---S
T ss_pred             ccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCC---C
Confidence              00       0                    00000        0  0011234566778888888877765544   3


Q ss_pred             cCccccccCCCC--cccC-CCcccCCccccC----------CCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhh
Q 006909          520 CSQKWDNLETAP--WIRD-SERFSLGSWFSN----------DGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQ  586 (626)
Q Consensus       520 ~~~~w~~~~~~~--~~~~-~~~~~~~~~~s~----------dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  586 (626)
                      .+.+|+......  .+.. +...++.++|+|          +++++++++. |+.|++||+.++.          .+...
T Consensus       511 ~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~----------~~~~~  579 (615)
T 1pgu_A          511 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL-DTNIFIYSVKRPM----------KIIKA  579 (615)
T ss_dssp             CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET-TSCEEEEESSCTT----------CCEEE
T ss_pred             eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC-CCcEEEEECCCCc----------eechh
Confidence            466676644332  2333 777899999999          9999999998 7999999998862          11122


Q ss_pred             hccCCccc--cccccccceEEEEecCCceEeeeeec
Q 006909          587 CLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       587 ~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                      ...|...+  .++++ +|. |+|++.||+|++|++.
T Consensus       580 ~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          580 LNAHKDGVNNLLWET-PST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             TTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred             hhcCccceEEEEEcC-CCC-eEEecCCceEEEEeee
Confidence            23333333  34555 788 9999999999999963

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-38  Score=361.25  Aligned_cols=244  Identities=13%  Similarity=0.115  Sum_probs=193.7

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .+|.+.|++++|+|+|++||+|+.||+|+||+..+..                                           
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~-------------------------------------------   50 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE-------------------------------------------   50 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE-------------------------------------------
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE-------------------------------------------
Confidence            4899999999999999999999999999999976521                                           


Q ss_pred             CCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                        ... ...|...|.+++|+|+.+|++++.|++|++||+.+++++..+.|...|++++|+| ++++|++|+.||+|++||
T Consensus        51 --~~~-~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd  126 (902)
T 2oaj_A           51 --VVI-KLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDA-SLDWMLIGLQNGSMIVYD  126 (902)
T ss_dssp             --EEE-ECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCT-TCSEEEEEETTSCEEEEE
T ss_pred             --EEE-EcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECC-CCCEEEEEcCCCcEEEEE
Confidence              111 2347889999999994479999999999999999999999998889999999999 999999999999999999


Q ss_pred             CCCCeEEE------------eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeecc-----------
Q 006909          338 VCEKRVVD------------WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-----------  393 (626)
Q Consensus       338 ~~~~~~~~------------~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-----------  393 (626)
                      +.++++..            ...|...|.+++|+|+ +..+++|+.||.| +||+++..... .+..+.           
T Consensus       127 ~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~-~~~~~~~~g~~~~~~~~  204 (902)
T 2oaj_A          127 IDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ-SFIYELPPFAPGGDFSE  204 (902)
T ss_dssp             TTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE-EECCCBCTTCCCSTTCC
T ss_pred             CCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE-EEecccCCcCCCccccc
Confidence            99887642            2457889999999996 5789999999999 99999876432 222220           


Q ss_pred             -ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeee-------ec-----------CCCCCeEEEEEc---
Q 006909          394 -RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-------GL-----------PKSGSQMSASFT---  451 (626)
Q Consensus       394 -~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~-------~~-----------~~~~~v~~~~~s---  451 (626)
                       ....|...|++++|+|+| .+|++++.|++|++||+.+......       .+           .+...|.+++|+   
T Consensus       205 ~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~  283 (902)
T 2oaj_A          205 KTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN  283 (902)
T ss_dssp             CTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS
T ss_pred             ccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC
Confidence             012234789999999997 7999999999999999875433221       11           134478999995   


Q ss_pred             -CCC-CEEEEEeCC-----ccEEEEEC
Q 006909          452 -TTG-KHIISIGDD-----CRVYVWNY  471 (626)
Q Consensus       452 -p~g-~~l~s~s~d-----g~I~iwd~  471 (626)
                       |++ .+|++|+.|     ..+.+|++
T Consensus       284 ~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          284 NPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             STTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCCCceEEEEec
Confidence             443 456666554     26777763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.9e-38  Score=320.68  Aligned_cols=289  Identities=16%  Similarity=0.225  Sum_probs=221.3

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGE------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      ..+|++.|++++|||||++||+|+.      |+.|++|+..++...                                  
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~----------------------------------   83 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN----------------------------------   83 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----------------------------------
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----------------------------------
Confidence            3479999999999999999999998      677888887653211                                  


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEe-----ecCCCCeEEEEEeeCCCCEEE
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~  325 (626)
                             ........+|...|++++|+|++.+++++.||+|+|||+.+++....     ..|...|++++|+| ++++|+
T Consensus        84 -------~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~  155 (357)
T 4g56_B           84 -------ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAV  155 (357)
T ss_dssp             -------GGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEE
T ss_pred             -------eeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEE
Confidence                   12234455789999999999999899999999999999988765432     25889999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          326 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      +|+.|++|++||+++++.+. +..|...|++++|+|++. .+++++.||.|++||+++.+..... .    ...+...++
T Consensus       156 sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-~----~~~~~~~v~  230 (357)
T 4g56_B          156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-D----FCASDTIPT  230 (357)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC-C----CTTCCSCEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee-e----ecccccccc
Confidence            99999999999999887664 567899999999999875 7889999999999999877653321 1    122347899


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECCCCCCCCCCcc
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQK  482 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~  482 (626)
                      +++|+|++..+|++++.|+.|++||+.+.........|...|.+++|+|++ ++|++|+.|++|+|||++++....    
T Consensus       231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~----  306 (357)
T 4g56_B          231 SVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR----  306 (357)
T ss_dssp             EEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE----
T ss_pred             chhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE----
Confidence            999999877899999999999999988655555555688999999999987 689999999999999998763211    


Q ss_pred             CCccceeeeccCCcEEEEecCC-CCcccccccCCCccccCccccc
Q 006909          483 NSVRSCEHFFSEGVSVAVQWPG-IGTEQKSLCSSSLRDCSQKWDN  526 (626)
Q Consensus       483 ~~~~~~~~~~~~g~~~av~~s~-~~~~l~~~~~~~~~~~~~~w~~  526 (626)
                             .+.+.+.+.+++|+| ++..|++.+.|   +.+.+|+.
T Consensus       307 -------~~~H~~~V~~vafsP~d~~~l~s~s~D---g~v~iW~~  341 (357)
T 4g56_B          307 -------DLSHRDFVTGVAWSPLDHSKFTTVGWD---HKVLHHHL  341 (357)
T ss_dssp             -------ECCCSSCEEEEEECSSSTTEEEEEETT---SCEEEEEC
T ss_pred             -------ECCCCCCEEEEEEeCCCCCEEEEEcCC---CeEEEEEC
Confidence                   112345566777776 56666554443   44666665

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1e-36  Score=306.74  Aligned_cols=252  Identities=29%  Similarity=0.525  Sum_probs=212.8

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      ...+..++.+|.+.|++++|+|+|++||+|+.||.|++|++.++                                    
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~------------------------------------   55 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------------------------------------   55 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------------------------------------
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc------------------------------------
Confidence            44556778899999999999999999999999999999998762                                    


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~  327 (626)
                               .....+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|.+++|+| ++++|++|
T Consensus        56 ---------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~  125 (312)
T 4ery_A           56 ---------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG  125 (312)
T ss_dssp             ---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEE
T ss_pred             ---------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEE
Confidence                     3456778899999999999987 89999999999999999999888875 889999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          328 SIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +.|+.|++||+++++.. .+..|...|.+++|+|++++|++++.||.|++||+.+.+......      ..+...+..++
T Consensus       126 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~~~  199 (312)
T 4ery_A          126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI------DDDNPPVSFVK  199 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC------CSSCCCEEEEE
T ss_pred             eCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe------ccCCCceEEEE
Confidence            99999999999987755 456788999999999999999999999999999998876533221      12246899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCC--eEEEEE-cCCCCEEEEEeCCccEEEEECCCC
Q 006909          407 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS--QMSASF-TTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~-sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |+|++ .+|++++.|+.|++||+.+.........|...  .....+ .+++.+|++|+.||.|++||+.++
T Consensus       200 ~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          200 FSPNG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             ECTTS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             ECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence            99997 79999999999999998865444333333332  223334 467899999999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-37  Score=319.14  Aligned_cols=314  Identities=17%  Similarity=0.247  Sum_probs=236.8

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      +|.+.|++++|+|||++||+|+ +++++||++.++.............                           .....
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~---------------------------~~~~~  113 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------------KDPEN  113 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc---------------------------ccccc
Confidence            6999999999999999999987 7899999998765432211000000                           00000


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      ........+...|.+++|+|++ +|++|+.|++|++||+.+++.+..+. |...|.+++|+| ++++|++++.|++|++|
T Consensus       114 ~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iw  192 (393)
T 1erj_A          114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIW  192 (393)
T ss_dssp             -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEE
Confidence            0011122345569999999998 89999999999999999999888875 899999999999 99999999999999999


Q ss_pred             eCCCCeEEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          337 GVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       337 d~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      |+++++......+...+.+++|+| ++++|++|+.||.|++||+.++...............|...|++++|+|++ .+|
T Consensus       193 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l  271 (393)
T 1erj_A          193 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSV  271 (393)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEE
T ss_pred             ECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEE
Confidence            999998887777888999999999 899999999999999999988765332111111123566899999999998 799


Q ss_pred             EEEeCCCcEEEEeCCcc------------eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909          416 MITSEDSKLRILDGVDV------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  483 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  483 (626)
                      ++++.|+.|++||+...            ........|...|.+++|+|++++|++|+.|+.|++||+.++...      
T Consensus       272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~------  345 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL------  345 (393)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE------
T ss_pred             EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE------
Confidence            99999999999997642            112233458889999999999999999999999999999875211      


Q ss_pred             CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCC
Q 006909          484 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP  563 (626)
Q Consensus       484 ~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~  563 (626)
                         .... .+.+.+.+++|+++.                                     .++|++.++++++. |+.|+
T Consensus       346 ---~~l~-~h~~~v~~v~~~~~~-------------------------------------~~~p~~~~l~sgs~-Dg~i~  383 (393)
T 1erj_A          346 ---LMLQ-GHRNSVISVAVANGS-------------------------------------SLGPEYNVFATGSG-DCKAR  383 (393)
T ss_dssp             ---EEEE-CCSSCEEEEEECSSC-------------------------------------TTCTTCEEEEEEET-TSEEE
T ss_pred             ---EEEC-CCCCCEEEEEecCCc-------------------------------------CcCCCCCEEEEECC-CCcEE
Confidence               0111 123445556555431                                     25678888999988 89999


Q ss_pred             CCCcccC
Q 006909          564 LWDVTID  570 (626)
Q Consensus       564 vwd~~~~  570 (626)
                      +|++...
T Consensus       384 iW~~~~~  390 (393)
T 1erj_A          384 IWKYKKI  390 (393)
T ss_dssp             EEEEEEC
T ss_pred             ECccccc
Confidence            9998754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.8e-37  Score=314.74  Aligned_cols=295  Identities=15%  Similarity=0.210  Sum_probs=224.3

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      ..|...|.+++|+|||++|++++ |+++++||.....     +..                             ......
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~-----~~~-----------------------------~~~~~~   71 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWL-----FKD-----------------------------PCAAPN   71 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEE-----ESS-----------------------------GGGTTC
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeee-----ecc-----------------------------ccccCC
Confidence            36788899999999999999888 7788999743200     000                             000000


Q ss_pred             CCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-----cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                      .........|...|.+++|+|++.|++|+.||+|+|||+.+++.+..+     .|...|++++|+| ++++|++|+.|++
T Consensus        72 ~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~  150 (344)
T 4gqb_B           72 EGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDIC  150 (344)
T ss_dssp             GGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred             cceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCe
Confidence            111222334678899999999999999999999999999988765443     5899999999999 9999999999999


Q ss_pred             EEEEeCCCCeEEE-eccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          333 VRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       333 v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      |++||+.+++++. +.+|...|.+++|+|++. .|++++.|++|++||+++.+.... +.    ...+...+++++|+|+
T Consensus       151 i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~----~~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ-IG----CSAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE-CC--------CCCEEEEEECSS
T ss_pred             EEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee-ee----cceeeccceeeeecCC
Confidence            9999999988765 667999999999999885 688999999999999988765432 11    1123467999999998


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  489 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  489 (626)
                      +..+|++|+.|++|++||+++.........|...|.+++|+|++ ++|++|+.|++|+|||+.++....           
T Consensus       226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-----------  294 (344)
T 4gqb_B          226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-----------  294 (344)
T ss_dssp             CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-----------
T ss_pred             CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-----------
Confidence            77899999999999999988655444445588999999999998 689999999999999998762111           


Q ss_pred             eeccCCcEEEEecCCCCcccc-cccCCCccccCcccccc
Q 006909          490 HFFSEGVSVAVQWPGIGTEQK-SLCSSSLRDCSQKWDNL  527 (626)
Q Consensus       490 ~~~~~g~~~av~~s~~~~~l~-~~~~~~~~~~~~~w~~~  527 (626)
                      ...+.+.+.+++|+|++..++ +.+.   ++.+.+|..-
T Consensus       295 ~~~H~~~V~~v~~sp~~~~llas~s~---D~~v~~w~v~  330 (344)
T 4gqb_B          295 SQAHRDFVRDATWSPLNHSLLTTVGW---DHQVVHHVVP  330 (344)
T ss_dssp             ECCCSSCEEEEEECSSSTTEEEEEET---TSCEEEEECC
T ss_pred             EcCCCCCEEEEEEeCCCCeEEEEEcC---CCeEEEEECC
Confidence            112345677888888877654 3333   3456777763

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-37  Score=323.36  Aligned_cols=285  Identities=16%  Similarity=0.223  Sum_probs=236.0

Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      ....+.+|..+|++++|+|++ +|++|+.|++|++||+.+++....+. |...|.+++|+| ++++|++|+.|++|++||
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEE
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEe
Confidence            356788999999999999987 99999999999999999999988885 899999999999 999999999999999999


Q ss_pred             CCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          338 VCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       338 ~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      +.+++.+. +.+|...|.+++|+|++++|++|+.|++|++||+.++..... +      ..|...|.++.|+|++ .+++
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~-~------~~h~~~v~~~~~~~~g-~~l~  250 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-F------TGHREWVRMVRPNQDG-TLIA  250 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-E------ECCSSCEEEEEECTTS-SEEE
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-E------eCCCccEEEEEECCCC-CEEE
Confidence            99877654 668899999999999999999999999999999988765322 2      2345789999999997 7999


Q ss_pred             EEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC--------------------CCEEEEEeCCccEEEEECCCCCC
Q 006909          417 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT--------------------GKHIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~--------------------g~~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      +++.|++|++||+...........|...|.+++|+|+                    |.+|++|+.|++|++||+.++. 
T Consensus       251 s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~-  329 (410)
T 1vyh_C          251 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-  329 (410)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-
T ss_pred             EEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-
Confidence            9999999999998866555555668899999999996                    6799999999999999997631 


Q ss_pred             CCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccC
Q 006909          477 PSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSAT  556 (626)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~  556 (626)
                                          .+..                                +.+|...+.+++|+|+|+++++++
T Consensus       330 --------------------~~~~--------------------------------~~~h~~~v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          330 --------------------CLMT--------------------------------LVGHDNWVRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             --------------------EEEE--------------------------------EECCSSCEEEEEECSSSSCEEEEE
T ss_pred             --------------------eEEE--------------------------------EECCCCcEEEEEEcCCCCEEEEEe
Confidence                                1100                                112334567788999999999988


Q ss_pred             CCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccc--ccccccceEEEEecCCceEeeeee
Q 006909          557 WPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       557 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                      . |+.|++||+.++           +.......|...+.  ++++ ++.+|||||.||+|++|+.
T Consensus       358 ~-D~~i~vwd~~~~-----------~~~~~~~~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          358 D-DKTLRVWDYKNK-----------RCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             T-TTEEEEECCTTS-----------CCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC-
T ss_pred             C-CCeEEEEECCCC-----------ceEEEEcCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Confidence            8 899999999876           22222334444443  4455 7999999999999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.1e-37  Score=368.22  Aligned_cols=403  Identities=19%  Similarity=0.281  Sum_probs=289.8

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceee------------------------eecCCCCCc
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCK------------------------SFTDDGGFG  227 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~------------------------~~~~~~~~~  227 (626)
                      ....++.+|.+.|++++|+|+|++|++|+.||+|++||+.++.....                        .+++++..+
T Consensus       734 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  813 (1249)
T 3sfz_A          734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI  813 (1249)
T ss_dssp             SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred             chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence            45567789999999999999999999999999999999987643222                        222222222


Q ss_pred             cCCCCCeeeecCCCCCCceeecCCcccccc-CCCceee-ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe
Q 006909          228 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-ESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV  304 (626)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~  304 (626)
                      .....+.+.+                |+.. ......+ .+|...|.+++|+|++ .+++++.|+.|++||+.++..+..
T Consensus       814 ~~~~~~~v~~----------------~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~  877 (1249)
T 3sfz_A          814 IVAAKNKVLL----------------FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD  877 (1249)
T ss_dssp             EEEETTEEEE----------------EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             EEEcCCcEEE----------------EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee
Confidence            2222222222                2211 1223333 3899999999999987 899999999999999999998887


Q ss_pred             ec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-------------------------------------------
Q 006909          305 FD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-------------------------------------------  340 (626)
Q Consensus       305 ~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-------------------------------------------  340 (626)
                      +. |...|.+++|+| ++++|++++.||+|++||+.+                                           
T Consensus       878 ~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  956 (1249)
T 3sfz_A          878 CRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI  956 (1249)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred             cCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence            74 888999999999 999999999999999998532                                           


Q ss_pred             ------------------------------------Ce-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc
Q 006909          341 ------------------------------------KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  383 (626)
Q Consensus       341 ------------------------------------~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~  383 (626)
                                                          ++ ......|...|++++|+|+|+++++++.||.|++||+.++.
T Consensus       957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A          957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp             EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred             EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence                                                00 11233567789999999999999999999999999998876


Q ss_pred             eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                      ...        ...+...|.++.|+|++  .+++++.|+.|++||+.+.........|...|.+++|+|++++|++++.|
T Consensus      1037 ~~~--------~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A         1037 YVF--------LQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp             EEC--------CBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCS
T ss_pred             eEE--------EecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCC
Confidence            432        22345899999999985  78999999999999987554444444588899999999999999999999


Q ss_pred             ccEEEEECCCCCCCCCC-ccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCC
Q 006909          464 CRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLG  542 (626)
Q Consensus       464 g~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  542 (626)
                      ++|++||+.++...... .....+.++.|+|+|..++++...+...+|.+.++.......   ..........+...+++
T Consensus      1107 ~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A         1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA---PISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp             SCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCC---CCC-------CCSCCCE
T ss_pred             CcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEec---cccccccccccCceEEE
Confidence            99999999876322111 122334455666666666555444444555544332211110   00011112456677999


Q ss_pred             ccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeee
Q 006909          543 SWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       543 ~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                      ++|+|||+++++++   +.|++||+.++.           ....+..+....  .++++ ||.+|++++.||+|++|++
T Consensus      1184 l~fs~dg~~l~s~~---g~v~vwd~~~g~-----------~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A         1184 VCFSPDSKTLVSAG---GYLKWWNVATGD-----------SSQTFYTNGTNLKKIHVSP-DFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp             EEECTTSSCEEEES---SSEEEBCSSSCB-----------CCCCCCCSSCCCCCCEECS-SSCCEEEECTTCCEEEECC
T ss_pred             EEECCCCCEEEECC---CeEEEEECCCCc-----------eeeeeeccCCcccEEEECC-CCCEEEEecCCcEEEEEee
Confidence            99999999998875   689999999872           222233333333  35556 8999999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-37  Score=354.35  Aligned_cols=383  Identities=13%  Similarity=0.075  Sum_probs=259.1

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .|...|++++|+| |++||+++.|++|+|||+.++                                             
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~---------------------------------------------   89 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ---------------------------------------------   89 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC---------------------------------------------
T ss_pred             CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC---------------------------------------------
Confidence            4888999999999 889999999999999999873                                             


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE-----------e-ecCCCCeEEEEEeeCCCCEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----------V-FDHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~-----------~-~~~~~~v~~~~~~p~~~~~l~  325 (626)
                      +.+..+. |...|++++|+|++ +|++|+.||+|++||+.++++..           . ..|...|++++|+|.++..++
T Consensus        90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence            2344443 66889999999998 99999999999999999887641           1 137889999999994457899


Q ss_pred             EEeCCCcEEEEeCCCCeEEEecc-C------------------CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee
Q 006909          326 SGSIDGKVRIWGVCEKRVVDWAD-V------------------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  386 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~~~~~~-~------------------~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~  386 (626)
                      +|+.||.| +||+++++...... +                  ...|.+++|+|+|++|++|+.||.|++||+++++...
T Consensus       169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            99999999 99999988665332 2                  4679999999999999999999999999998765432


Q ss_pred             e-EEe-eccccc---------cCCCCeEEEEEc----CCCCcEEEEEeC-------------------------------
Q 006909          387 E-KVD-FHDRKK---------TSGNKITGIQFS----RDESQRIMITSE-------------------------------  420 (626)
Q Consensus       387 ~-~~~-~~~~~~---------~~~~~i~~l~~s----~~~~~~l~~~s~-------------------------------  420 (626)
                      . .+. ...+..         .+...|++++|+    |++..++++++.                               
T Consensus       248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~  327 (902)
T 2oaj_A          248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY  327 (902)
T ss_dssp             EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred             EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence            1 010 000000         122356777774    332234444433                               


Q ss_pred             ---------------------------------------------CCcEEEEeCCcceeeee------------------
Q 006909          421 ---------------------------------------------DSKLRILDGVDVIHKFK------------------  437 (626)
Q Consensus       421 ---------------------------------------------dg~i~iwd~~~~~~~~~------------------  437 (626)
                                                                   |+.|++||+.+......                  
T Consensus       328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~  407 (902)
T 2oaj_A          328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS  407 (902)
T ss_dssp             HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred             hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence                                                         34444444321100000                  


Q ss_pred             -----------------------ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC------------cc
Q 006909          438 -----------------------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK------------QK  482 (626)
Q Consensus       438 -----------------------~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~------------~~  482 (626)
                                             ..+|...+..++|+|++++|++|+.|++|++||+.++......            ..
T Consensus       408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h  487 (902)
T 2oaj_A          408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK  487 (902)
T ss_dssp             EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred             EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence                                   0012223344566899999999999999999999987432110            11


Q ss_pred             CCccceeeeccCCcEEEEecCCCCcccccccCCCccc----------cCc-----c------------------ccccCC
Q 006909          483 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD----------CSQ-----K------------------WDNLET  529 (626)
Q Consensus       483 ~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~----------~~~-----~------------------w~~~~~  529 (626)
                      ...+.+++|+|+|..+|++...+...+|.+.......          .+.     +                  ...+..
T Consensus       488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  567 (902)
T 2oaj_A          488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP  567 (902)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred             CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence            2345566788888888777766666777665431100          000     0                  000001


Q ss_pred             CCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhH-HHHhhhc-cCCccc--cccc-----cc
Q 006909          530 APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQ-RLQQQCL-NNVDDV--RAIS-----AT  600 (626)
Q Consensus       530 ~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~--~~~s-----~~  600 (626)
                      ...+..|...|++++||||| +||+++. |+.|++||+.++.      ..+. .+ .... .|.+.+  .+|+     + 
T Consensus       568 ~~~l~~h~~~V~svafSpdG-~lAsgs~-D~tv~lwd~~~~~------~~~~~~~-~~~~~gh~~~V~sv~Fs~~~~~~-  637 (902)
T 2oaj_A          568 STAVHANKGKTSAINNSNIG-FVGIAYA-AGSLMLIDRRGPA------IIYMENI-REISGAQSACVTCIEFVIMEYGD-  637 (902)
T ss_dssp             EEEECCCSCSEEEEEECBTS-EEEEEET-TSEEEEEETTTTE------EEEEEEG-GGTCSSCCCCEEEEEEEEEECTT-
T ss_pred             eEEEEcCCCcEEEEEecCCc-EEEEEeC-CCcEEEEECCCCe------EEEEeeh-hHhccccccceEEEEEEEEecCC-
Confidence            12345677889999999999 9999998 7999999987651      0000 00 0111 222223  4566     5 


Q ss_pred             c---ceEEEEecCCceEeeeee
Q 006909          601 W---GLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       601 d---g~~ivt~g~Dg~Irvw~~  619 (626)
                      |   +++|++|+.||+|++|++
T Consensus       638 Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          638 DGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             SSSEEEEEEEEETTSEEEEEEE
T ss_pred             CCCcceEEEEEecCCcEEEEEE
Confidence            5   589999999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-37  Score=323.08  Aligned_cols=342  Identities=18%  Similarity=0.198  Sum_probs=244.9

Q ss_pred             ccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEc----CCCcce-----eeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909          178 QAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV----TSVAAS-----CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  247 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (626)
                      ..|.+.|++++|+|+|+ +||+|+.||.|++|++    .++...     ...+..                         
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------------------------   96 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH-------------------------   96 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC-------------------------
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc-------------------------
Confidence            35669999999999999 9999999999999999    664310     000000                         


Q ss_pred             ecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEE
Q 006909          248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~  325 (626)
                               .........+|...|++++|+|++ +|++++.|+.|++|| .+++.+..+. |...|.+++|+| ++++|+
T Consensus        97 ---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~  165 (425)
T 1r5m_A           97 ---------PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHII  165 (425)
T ss_dssp             ---------CCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEE
T ss_pred             ---------cccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEE
Confidence                     000111233578899999999987 899999999999999 5566666664 889999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEec-cCCCC---------------eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEE
Q 006909          326 SGSIDGKVRIWGVCEKRVVDWA-DVRDV---------------ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  389 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~~~~~-~~~~~---------------i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~  389 (626)
                      +++.|+.|++||+.+++..... .+...               +.+++|+|++ .+++++.+|.|++||+.+...... +
T Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~-~  243 (425)
T 1r5m_A          166 SMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGK-L  243 (425)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEE-E
T ss_pred             EEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeee-e
Confidence            9999999999999988766533 33333               8999999986 688999999999999987754322 2


Q ss_pred             eeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909          390 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  469 (626)
Q Consensus       390 ~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw  469 (626)
                            ..|...|++++|+|++ .+|++++.|+.|++||+...........|...|.+++|+|++ ++++++.|+.|++|
T Consensus       244 ------~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~  315 (425)
T 1r5m_A          244 ------IGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW  315 (425)
T ss_dssp             ------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred             ------ccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence                  2345789999999997 699999999999999987654444445588899999999999 99999999999999


Q ss_pred             ECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCC
Q 006909          470 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG  549 (626)
Q Consensus       470 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg  549 (626)
                      |+.++..                     +..                                ...+...+..++|+|+|
T Consensus       316 d~~~~~~---------------------~~~--------------------------------~~~~~~~i~~~~~s~~~  342 (425)
T 1r5m_A          316 SLKQNTL---------------------LAL--------------------------------SIVDGVPIFAGRISQDG  342 (425)
T ss_dssp             ETTTTEE---------------------EEE--------------------------------EECTTCCEEEEEECTTS
T ss_pred             ECCCCcE---------------------eEe--------------------------------cccCCccEEEEEEcCCC
Confidence            9976410                     000                                00112235556677777


Q ss_pred             CcccccCCCCCCCCCCCcccCCCCCCCChhh----------HHHHhhhccCCc--cc--cccccccceEEEEecCCceEe
Q 006909          550 PCRGSATWPAEKLPLWDVTIDSDGYCQDPQQ----------QRLQQQCLNNVD--DV--RAISATWGLVIVTAGCDGMIK  615 (626)
Q Consensus       550 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~--~~--~~~s~~dg~~ivt~g~Dg~Ir  615 (626)
                      +++++++. ++.|++||+.++.. .......          .........+..  .+  .++++ +|.+|++++.||+|+
T Consensus       343 ~~l~~~~~-dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~  419 (425)
T 1r5m_A          343 QKYAVAFM-DGQVNVYDLKKLNS-KSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGS  419 (425)
T ss_dssp             SEEEEEET-TSCEEEEECHHHHC---------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCE
T ss_pred             CEEEEEEC-CCeEEEEECCCCcc-ceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEE
Confidence            77777776 67888888776510 0000000          001222233322  22  34555 899999999999999


Q ss_pred             eeeecC
Q 006909          616 TFHNYG  621 (626)
Q Consensus       616 vw~~~g  621 (626)
                      +|++-|
T Consensus       420 iw~~~g  425 (425)
T 1r5m_A          420 VVAIPG  425 (425)
T ss_dssp             EEECCC
T ss_pred             EEeecC
Confidence            999876

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-36  Score=306.17  Aligned_cols=251  Identities=21%  Similarity=0.301  Sum_probs=197.7

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      +.+.++|++|++.|++++|+|+  +||+|+.||+|+||++..+..                                   
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-----------------------------------   46 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-----------------------------------   46 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-----------------------------------
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-----------------------------------
Confidence            3456778999999999999988  999999999999999976311                                   


Q ss_pred             CccccccCCCceee-cc-CccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-------CeeeEee-cCCCCeEEEEEeeC
Q 006909          251 DEVFQIEESPLQEL-HG-HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------NQCLNVF-DHHNYVTCVQFNPI  319 (626)
Q Consensus       251 ~~~~~~~~~~~~~~-~~-h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-------~~~~~~~-~~~~~v~~~~~~p~  319 (626)
                              .....+ .+ |...|.+++|+|++ +|++|+.|++|++||+..       .+++..+ .|...|.+++|+| 
T Consensus        47 --------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-  117 (330)
T 2hes_X           47 --------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-  117 (330)
T ss_dssp             --------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-
T ss_pred             --------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-
Confidence                    112333 34 99999999999987 899999999999999853       3445555 4899999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC----e-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc
Q 006909          320 DDNYFISGSIDGKVRIWGVCEK----R-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  394 (626)
Q Consensus       320 ~~~~l~s~s~dg~v~iwd~~~~----~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~  394 (626)
                      ++++|++|+.|++|++||++..    + +..+..|...|.+++|+|++++|++++.|++|++||......... ..    
T Consensus       118 ~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~-~~----  192 (330)
T 2hes_X          118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV-AV----  192 (330)
T ss_dssp             TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE-EE----
T ss_pred             CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE-EE----
Confidence            9999999999999999999532    2 334678999999999999999999999999999999876532111 11    


Q ss_pred             cccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEeCCcc--------eeeeeec-CCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          395 KKTSGNKITGIQFSRDE-SQRIMITSEDSKLRILDGVDV--------IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       395 ~~~~~~~i~~l~~s~~~-~~~l~~~s~dg~i~iwd~~~~--------~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      ...|...|.+++|+|++ ..+|++++.|++|++||+...        ....... .|...|.+++|++++ +|++++.||
T Consensus       193 ~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg  271 (330)
T 2hes_X          193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG  271 (330)
T ss_dssp             ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS
T ss_pred             ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC
Confidence            23456899999999983 258999999999999997532        1112222 278899999999765 899999999


Q ss_pred             cEEEEECCC
Q 006909          465 RVYVWNYDE  473 (626)
Q Consensus       465 ~I~iwd~~~  473 (626)
                      .|++|+..+
T Consensus       272 ~v~iw~~~~  280 (330)
T 2hes_X          272 VLAVYEEVD  280 (330)
T ss_dssp             CEEEEEEET
T ss_pred             EEEEEEcCC
Confidence            999999764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.8e-37  Score=336.28  Aligned_cols=243  Identities=15%  Similarity=0.230  Sum_probs=206.7

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .|.+.|++++|+|+|++||+++ ++.|+||++.++..                                         ..
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------------------------~~   53 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------------------------KV   53 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------------------------SS
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------------------------cc
Confidence            6899999999999999999998 78999999986210                                         01


Q ss_pred             CCceeeccCccc-eEEEEEcC--CC-eEEEEeCCCcEEEeccCCC--------eeeEeec-CCCCeEEEEEeeCCCCEEE
Q 006909          259 SPLQELHGHKGD-VLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN--------QCLNVFD-HHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       259 ~~~~~~~~h~~~-V~~l~~s~--~~-~l~s~s~d~~v~iwd~~~~--------~~~~~~~-~~~~v~~~~~~p~~~~~l~  325 (626)
                      .....+.+|... |++++|+|  ++ +|++++.|++|++||+.++        .....+. |...|.+++|+| ++++|+
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  132 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLC  132 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEE
Confidence            457788899999 99999999  87 8999999999999999754        5555554 889999999999 999999


Q ss_pred             EEeCC----CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          326 SGSID----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       326 s~s~d----g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      +++.+    +.|++|| .......+..|...|.+++|+|+++ .+++++.|+.|++||+.+.+.... +      ..|..
T Consensus       133 ~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-~------~~~~~  204 (615)
T 1pgu_A          133 VVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-D------RTHHK  204 (615)
T ss_dssp             EEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-E------CSSSC
T ss_pred             EeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee-e------cccCC
Confidence            99988    7899999 3445566788999999999999998 799999999999999887654322 1      22345


Q ss_pred             ---CeEEEEEcCC-CCcEEEEEeCCCcEEEEeCCcceeeeee-c---CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          401 ---KITGIQFSRD-ESQRIMITSEDSKLRILDGVDVIHKFKG-L---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       401 ---~i~~l~~s~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                         .|++++|+|+ + .+|++++.|+.|++||+.+....... .   .|...|.+++|+ ++++|++++.|+.|++||+.
T Consensus       205 ~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          205 QGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             TTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred             CCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence               8999999999 7 79999999999999998765544444 3   688999999999 99999999999999999998


Q ss_pred             CC
Q 006909          473 EL  474 (626)
Q Consensus       473 ~~  474 (626)
                      ++
T Consensus       283 ~~  284 (615)
T 1pgu_A          283 TS  284 (615)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.9e-36  Score=305.04  Aligned_cols=304  Identities=16%  Similarity=0.247  Sum_probs=240.3

Q ss_pred             cccccccccccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      +.+..+|+||++.|++|+|+|+ +++|||||.||+|+|||+.+....                                 
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~---------------------------------   74 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---------------------------------   74 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------------------------------
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------------------------------
Confidence            3456789999999999999998 689999999999999999863221                                 


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~  327 (626)
                             ...+...+.+|...|.+++|+|++ +|++++.|+.|++|+........... +...+..+.+++ ++++|+++
T Consensus        75 -------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~  146 (340)
T 4aow_A           75 -------YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSG  146 (340)
T ss_dssp             -------SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred             -------cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee-cCccceee
Confidence                   023456788999999999999998 89999999999999999888777664 677888899998 99999999


Q ss_pred             eCCCcEEEEeCCCCeEE--EeccCCCCeEEEEEeeCC--CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          328 SIDGKVRIWGVCEKRVV--DWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      +.|+.+++||+......  ....|...+..++|++++  ..+++++.|+.|++||+.+......       ...|...|+
T Consensus       147 s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-------~~~h~~~v~  219 (340)
T 4aow_A          147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-------HIGHTGYLN  219 (340)
T ss_dssp             ETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE-------ECCCSSCEE
T ss_pred             cCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE-------ecCCCCcEE
Confidence            99999999999876544  355778899999999865  5788999999999999998765332       223457999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  483 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  483 (626)
                      +++|+|++ .+|++++.|+.|++||+.+........ +...+..++|+|++.+++ ++.|+.|++||+++.....     
T Consensus       220 ~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~-----  291 (340)
T 4aow_A          220 TVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVD-----  291 (340)
T ss_dssp             EEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEE-----
T ss_pred             EEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEE-----
Confidence            99999997 799999999999999988665544443 456899999999886554 5569999999988641100     


Q ss_pred             CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCC
Q 006909          484 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP  563 (626)
Q Consensus       484 ~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~  563 (626)
                            .+.  ....                               ......+...|++++|+|||++|++++. |+.|+
T Consensus       292 ------~~~--~~~~-------------------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~-Dg~v~  331 (340)
T 4aow_A          292 ------ELK--QEVI-------------------------------STSSKAEPPQCTSLAWSADGQTLFAGYT-DNLVR  331 (340)
T ss_dssp             ------EEC--CC--------------------------------------CCCCCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred             ------ecc--ccce-------------------------------eeeccCCCCCEEEEEECCCCCEEEEEeC-CCEEE
Confidence                  000  0000                               0002234556888999999999999988 89999


Q ss_pred             CCCcccC
Q 006909          564 LWDVTID  570 (626)
Q Consensus       564 vwd~~~~  570 (626)
                      +||+.+|
T Consensus       332 iW~~~tG  338 (340)
T 4aow_A          332 VWQVTIG  338 (340)
T ss_dssp             EEEEEC-
T ss_pred             EEeCCCc
Confidence            9999988

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.1e-36  Score=300.96  Aligned_cols=245  Identities=18%  Similarity=0.340  Sum_probs=217.7

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      ...+.+|...|++++|+|++.++++|+.|++|++||+.++                                        
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~----------------------------------------  112 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG----------------------------------------  112 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----------------------------------------
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC----------------------------------------
Confidence            4467899999999999999999999999999999999873                                        


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                           ..+..+..|...+.+++|+|++ +|++++.|+.|++||+.+++....+. +...|.+++|+| ++++|++|+.||
T Consensus       113 -----~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg  186 (321)
T 3ow8_A          113 -----KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDG  186 (321)
T ss_dssp             -----EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             -----CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCC
Confidence                 3456677888899999999998 89999999999999999998887774 778999999999 999999999999


Q ss_pred             cEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          332 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       332 ~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      .|++||+++++.+. +..|...|.+++|+|++++|++|+.||.|++||++.......       ...|...|.+++|+|+
T Consensus       187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT-------LSGHASWVLNVAFCPD  259 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE-------ECCCSSCEEEEEECTT
T ss_pred             eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE-------EcCCCCceEEEEECCC
Confidence            99999999987664 567889999999999999999999999999999987764321       2234578999999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      + .+|++++.|++|++||+.+.........|...|.+++|+|++++|++++.|++|++||+.
T Consensus       260 ~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          260 D-THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             S-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             C-CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            7 799999999999999998766665556688999999999999999999999999999964

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=301.79  Aligned_cols=247  Identities=18%  Similarity=0.268  Sum_probs=203.1

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .|...|++++|+|++ .|++|+.||+|+|||+.+++...                                         
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~-----------------------------------------  117 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI-----------------------------------------  117 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE-----------------------------------------
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee-----------------------------------------
Confidence            477889999999985 78899999999999998743211                                         


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      .....+.+|...|++++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+|.+..+|++|+.|++|++|
T Consensus       118 ~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw  197 (344)
T 4gqb_B          118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW  197 (344)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence            1123456899999999999998 89999999999999999999999885 999999999999444689999999999999


Q ss_pred             eCCCCeEEEe---ccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          337 GVCEKRVVDW---ADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       337 d~~~~~~~~~---~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      |+++++....   ..+...+.+++|+|+ +++|++|+.||.|++||+++.+.... +      ..|...|++++|+|++.
T Consensus       198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~-~------~~h~~~v~~v~fsp~g~  270 (344)
T 4gqb_B          198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS-S------AVHSQCVTGLVFSPHSV  270 (344)
T ss_dssp             ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE-E------ECCSSCEEEEEECSSSS
T ss_pred             cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE-E------cCCCCCEEEEEEccCCC
Confidence            9998876553   345567999999995 56889999999999999988765432 2      23458999999999986


Q ss_pred             cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCCC
Q 006909          413 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~~  475 (626)
                      .+|++++.|++|+|||..... .+....|...|.+++|+|+++ +|++++.|++|++|++.+..
T Consensus       271 ~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          271 PFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             eEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            789999999999999987543 344566899999999999986 57799999999999998753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.9e-35  Score=295.32  Aligned_cols=252  Identities=19%  Similarity=0.299  Sum_probs=208.5

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+..                                        
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~----------------------------------------   42 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET----------------------------------------   42 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC----------------------------------------
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC----------------------------------------
Confidence            3567999999999999999999999999999999987421                                        


Q ss_pred             cccCCCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCC--CCEEEE
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS  326 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~--~~~l~s  326 (626)
                         ...+..+.+|.+.|++++|+++  + +|++|+.|++|++||+.+++  .+..+ .|...|.+++|+| +  +.+|++
T Consensus        43 ---~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s  118 (297)
T 2pm7_B           43 ---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLV  118 (297)
T ss_dssp             ---BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEE
T ss_pred             ---cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEE
Confidence               2456788999999999999863  4 89999999999999998874  34444 4889999999999 6  789999


Q ss_pred             EeCCCcEEEEeCCCCe---EEEeccCCCCeEEEEEeeC-------------CCEEEEEecCCcEEEEEcCCCceeeeEEe
Q 006909          327 GSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPD-------------GKGFIVGSITGTCHFYKASGNDLKLEKVD  390 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~-------------g~~l~~g~~dg~i~i~d~~~~~~~~~~~~  390 (626)
                      |+.|++|++||++.+.   ......|...|.+++|+|+             +++|++|+.|++|++||+++........ 
T Consensus       119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~-  197 (297)
T 2pm7_B          119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-  197 (297)
T ss_dssp             EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE-
T ss_pred             EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE-
Confidence            9999999999998753   3456788999999999997             5799999999999999998765322111 


Q ss_pred             eccccccCCCCeEEEEEcCCC--CcEEEEEeCCCcEEEEeCCcce-----eeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          391 FHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       391 ~~~~~~~~~~~i~~l~~s~~~--~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                        .....|...|.+++|+|++  ..+|++++.|++|+|||.....     ..+....+...|.+++|+|+|++|++++.|
T Consensus       198 --~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          198 --STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             --EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred             --EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence              1123456899999999985  4799999999999999976421     222224567899999999999999999999


Q ss_pred             ccEEEEECCC
Q 006909          464 CRVYVWNYDE  473 (626)
Q Consensus       464 g~I~iwd~~~  473 (626)
                      +.|++|+...
T Consensus       276 ~~v~lw~~~~  285 (297)
T 2pm7_B          276 NKVTLWKENL  285 (297)
T ss_dssp             SCEEEEEECT
T ss_pred             CcEEEEEECC
Confidence            9999999763

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.2e-36  Score=305.62  Aligned_cols=317  Identities=15%  Similarity=0.185  Sum_probs=231.3

Q ss_pred             CCceeeccCcc-ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE--ee--cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          259 SPLQELHGHKG-DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VF--DHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       259 ~~~~~~~~h~~-~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~--~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                      ..+..+.+|.. .|.+++|+|++ +|++|+.|++|+|||+.++....  .+  .|...|.+++|+| ++++|++|+.|++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCc
Confidence            34678889988 99999999998 89999999999999998876432  22  5889999999999 9999999999999


Q ss_pred             EEEEeCCCCe---EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          333 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       333 v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      |++||+..+.   ...+.+|...|.+++|+|++++|++|+.|++|++||+...........    ...|...|.+++|+|
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV----LNSHTQDVKHVVWHP  160 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE----ECCCCSCEEEEEECS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE----ecCcCCCeEEEEECC
Confidence            9999988764   345678999999999999999999999999999999987643221111    223457899999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccc
Q 006909          410 DESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRS  487 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~  487 (626)
                      ++ .+|++++.|+.|++||....  ........|...|.+++|+|+|++|++++.|++|+||+.........      ..
T Consensus       161 ~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~------~~  233 (345)
T 3fm0_A          161 SQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG------VA  233 (345)
T ss_dssp             SS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC------CC
T ss_pred             CC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc------ce
Confidence            97 79999999999999997643  23344456889999999999999999999999999999754211100      00


Q ss_pred             eeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909          488 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV  567 (626)
Q Consensus       488 ~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~  567 (626)
                      +....+....           +..                    ....+...+..++|+|++..+++++. |+.|++|+.
T Consensus       234 ~~~~~~~~~~-----------~~~--------------------~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~vw~~  281 (345)
T 3fm0_A          234 CSGSDPSWKC-----------ICT--------------------LSGFHSRTIYDIAWCQLTGALATACG-DDAIRVFQE  281 (345)
T ss_dssp             CC---CEEEE-----------EEE--------------------ECSSCSSCEEEEEECTTTCCEEEEET-TSCEEEEEE
T ss_pred             eeccCCccce-----------eEE--------------------ecCCCCCcEEEEEEecCCCEEEEEeC-CCeEEEEEe
Confidence            0000000000           000                    01124456888999999999999988 799999988


Q ss_pred             ccCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeecC
Q 006909          568 TIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYG  621 (626)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~g  621 (626)
                      ..+.......  +.........|...+  .++++....+|||||.||+|++|+.-.
T Consensus       282 ~~~~~~~~~~--~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          282 DPNSDPQQPT--FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             CTTSCTTSCC--EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             CCCCCcceee--EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence            7652110000  000000111233333  345563336999999999999999643

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-36  Score=316.87  Aligned_cols=345  Identities=15%  Similarity=0.206  Sum_probs=256.9

Q ss_pred             ccCcEEEEEEcCCCC-EEEEE----------eCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          180 HKGCIWTLKFSPDGR-YLASG----------GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       180 H~~~V~~l~fspdg~-~Latg----------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      +...|++++|+|+|+ +||+|          +.||.|+|||+.++..                                 
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~---------------------------------   57 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS---------------------------------   57 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG---------------------------------
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC---------------------------------
Confidence            445789999999997 99999          8999999999987321                                 


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC----CeeeEee-cCCCCeEEEEEeeCC-C
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVF-DHHNYVTCVQFNPID-D  321 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~----~~~~~~~-~~~~~v~~~~~~p~~-~  321 (626)
                               ..++..+ .|...|++++|+|++ +|++++.|+.|++||+.+    ...+..+ .|...|.+++|+| + +
T Consensus        58 ---------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~  126 (416)
T 2pm9_A           58 ---------EKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA-KQD  126 (416)
T ss_dssp             ---------CSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS-SST
T ss_pred             ---------CcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcC-CCC
Confidence                     0122233 588999999999988 899999999999999987    3455555 4899999999999 6 8


Q ss_pred             CEEEEEeCCCcEEEEeCCCCe------EE-E---eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEe
Q 006909          322 NYFISGSIDGKVRIWGVCEKR------VV-D---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVD  390 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~~~~------~~-~---~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~  390 (626)
                      ++|++++.|+.|++||+.+++      .. .   ...|...|.+++|+|+ +.++++++.||.|++||+.+..... .+.
T Consensus       127 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~  205 (416)
T 2pm9_A          127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLS  205 (416)
T ss_dssp             TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE-EEC
T ss_pred             CEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce-EEe
Confidence            999999999999999998875      22 1   3568889999999999 7899999999999999998876533 233


Q ss_pred             eccccccCCCCeEEEEEcCCCCcEEEEEeCCC---cEEEEeCCcce-eeeeec-CCCCCeEEEEEcC-CCCEEEEEeCCc
Q 006909          391 FHDRKKTSGNKITGIQFSRDESQRIMITSEDS---KLRILDGVDVI-HKFKGL-PKSGSQMSASFTT-TGKHIISIGDDC  464 (626)
Q Consensus       391 ~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg---~i~iwd~~~~~-~~~~~~-~~~~~v~~~~~sp-~g~~l~s~s~dg  464 (626)
                      .+.....+...|++++|+|++..++++++.|+   .|++||+.... ...... .|...|.+++|+| ++++|++++.|+
T Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg  285 (416)
T 2pm9_A          206 YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN  285 (416)
T ss_dssp             CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred             ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC
Confidence            33222333588999999999867999999999   99999987542 222222 4888999999999 999999999999


Q ss_pred             cEEEEECCCCCCCCC-CccCCccceeeeccCC-cEEEEecCCCCcccccccCCCccccC------------ccccccC--
Q 006909          465 RVYVWNYDELCFPSS-KQKNSVRSCEHFFSEG-VSVAVQWPGIGTEQKSLCSSSLRDCS------------QKWDNLE--  528 (626)
Q Consensus       465 ~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~g-~~~av~~s~~~~~l~~~~~~~~~~~~------------~~w~~~~--  528 (626)
                      .|++||+.++..... ........++.|+|++ ..++++.......+|.+.........            .+|....  
T Consensus       286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (416)
T 2pm9_A          286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSRE  365 (416)
T ss_dssp             EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------------------
T ss_pred             CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccc
Confidence            999999988632211 1122344566777877 56666555445566665443221110            0000000  


Q ss_pred             ---------CCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          529 ---------TAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       529 ---------~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                               ..+....+...+.+++|+|||+++++++. |+.|++|++.+.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-d~~v~~w~~~~~  415 (416)
T 2pm9_A          366 ESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD-GKGVSITNPKIS  415 (416)
T ss_dssp             -CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT-SSCBCCBCCCCC
T ss_pred             ccccccccccccCCccccCCccceEEeeCCeEEEEeCC-CCeEEEEEeccC
Confidence                     00111124566789999999999999997 799999998864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.5e-35  Score=300.50  Aligned_cols=250  Identities=22%  Similarity=0.411  Sum_probs=216.2

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ....+..|...|.+++|+|+|++||+|+.|+.|++|++.+....                                    
T Consensus        89 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~------------------------------------  132 (340)
T 1got_B           89 KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN------------------------------------  132 (340)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS------------------------------------
T ss_pred             cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc------------------------------------
Confidence            44567789999999999999999999999999999999763210                                    


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                           ......+.+|...|.++.|++++.+++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++|+.|+
T Consensus       133 -----~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~  206 (340)
T 1got_B          133 -----VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDA  206 (340)
T ss_dssp             -----CEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             -----ceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCC
Confidence                 1234567899999999999999999999999999999999999988885 889999999999 999999999999


Q ss_pred             cEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          332 KVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       332 ~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      +|++||++++... .+..|...|.+++|+|++++|++|+.||+|++||++....... ..    ...+...|++++|+|+
T Consensus       207 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~----~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YS----HDNIICGITSVSFSKS  281 (340)
T ss_dssp             CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-EC----CTTCCSCEEEEEECTT
T ss_pred             cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE-Ec----cCCcccceEEEEECCC
Confidence            9999999987765 4667899999999999999999999999999999987654322 11    1122357999999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      | .+|++++.|+.|++||..+.........|...|.+++|+|+|++|++|+.|++|+|||
T Consensus       282 g-~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          282 G-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             S-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             C-CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            8 7999999999999999876554444455899999999999999999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-35  Score=297.78  Aligned_cols=288  Identities=14%  Similarity=0.183  Sum_probs=226.2

Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      ...+++.+|...|++++|+|++ +|++++.||+|++||+.++..+..+. |..+|.+++|+| ++++|++|+.|++|++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEE
Confidence            3467889999999999999998 89999999999999999999988885 788999999999 99999999999999999


Q ss_pred             eCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          337 GVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       337 d~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      |+.+++.+ .+..|...|.+++|+|++++|++|+.||+|++||+.+.......+      ..|...|++++|+|++..+|
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~------~~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF------EGHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE------CCCCSCEEEEEECTTCTTEE
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh------cccCCcEEEEEECCCCCCEE
Confidence            99987755 567899999999999999999999999999999998764433222      23458899999999655799


Q ss_pred             EEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcC--CCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec
Q 006909          416 MITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTT--TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  492 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp--~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  492 (626)
                      ++++.|++|++||+......+.. ..+...+..+.|+|  ++++|++++.|++|++||+.++.                 
T Consensus       157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----------------  219 (304)
T 2ynn_A          157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----------------  219 (304)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-----------------
T ss_pred             EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-----------------
Confidence            99999999999998754433332 23557888999976  78899999999999999997641                 


Q ss_pred             cCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCC
Q 006909          493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSD  572 (626)
Q Consensus       493 ~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~  572 (626)
                          .+..                                +.+|...+..++|+|++.++++++. |+.|++||+.++  
T Consensus       220 ----~~~~--------------------------------~~~h~~~v~~~~~~p~~~~l~s~s~-Dg~i~iWd~~~~--  260 (304)
T 2ynn_A          220 ----CVAT--------------------------------LEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTY--  260 (304)
T ss_dssp             ----EEEE--------------------------------EECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTC--
T ss_pred             ----ccee--------------------------------eCCCCCCEEEEEECCCCCEEEEEcC-CCeEEEEECCCC--
Confidence                1000                                1123344667788999999999988 899999999887  


Q ss_pred             CCCCChhhHHHHhhhccCCccc--cccccccce-EEEEecCCceEeeeee
Q 006909          573 GYCQDPQQQRLQQQCLNNVDDV--RAISATWGL-VIVTAGCDGMIKTFHN  619 (626)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~-~ivt~g~Dg~Irvw~~  619 (626)
                               ++......+....  .++.+.++. +||+|+.|| +.+|..
T Consensus       261 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~  300 (304)
T 2ynn_A          261 ---------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL  300 (304)
T ss_dssp             ---------CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred             ---------ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence                     2222222333332  344453433 588888777 555543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-35  Score=300.61  Aligned_cols=304  Identities=19%  Similarity=0.233  Sum_probs=236.1

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ....|.+|++.|++++|+|+|++||+|+.||.|+|||+.+                                        
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------------------------------------   63 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN----------------------------------------   63 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----------------------------------------
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----------------------------------------
Confidence            3456789999999999999999999999999999999987                                        


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC-
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-  330 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-  330 (626)
                           ...+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+.+...|.+++|+| ++.++++++.+ 
T Consensus        64 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~  137 (369)
T 3zwl_B           64 -----GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNV  137 (369)
T ss_dssp             -----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSSEEEEEECCB
T ss_pred             -----chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEcc-CCCEEEEecCCc
Confidence                 34567788999999999999987 89999999999999999999999999999999999999 99999999998 


Q ss_pred             ----CcEEEEeCCCCe------------EEEeccCCC--CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909          331 ----GKVRIWGVCEKR------------VVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH  392 (626)
Q Consensus       331 ----g~v~iwd~~~~~------------~~~~~~~~~--~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~  392 (626)
                          +.|++||+....            ......+..  .+.+++|+|++++|++++.||.|++||+.+.......+.. 
T Consensus       138 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-  216 (369)
T 3zwl_B          138 MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-  216 (369)
T ss_dssp             TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-
T ss_pred             cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-
Confidence                999999987542            222334444  8999999999999999999999999999884443333332 


Q ss_pred             cccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          393 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       393 ~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                           +...|.+++|+|++ .+|++++.|+.|++||+.+........ +...+..++|+|+++++++++.++.+.+|...
T Consensus       217 -----~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  289 (369)
T 3zwl_B          217 -----HEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTS  289 (369)
T ss_dssp             -----CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC--------
T ss_pred             -----CCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEe
Confidence                 34789999999997 799999999999999987654433333 67889999999999999999999854444433


Q ss_pred             CCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcc
Q 006909          473 ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCR  552 (626)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l  552 (626)
                      ...                   +......|..        ....            ....+..+...+.+++|+|||+++
T Consensus       290 ~~~-------------------~~~~i~~~d~--------~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l  330 (369)
T 3zwl_B          290 ANE-------------------GKFEARFYHK--------IFEE------------EIGRVQGHFGPLNTVAISPQGTSY  330 (369)
T ss_dssp             ------------------------CEEEEEET--------TTCC------------EEEEEECCSSCEEEEEECTTSSEE
T ss_pred             cCC-------------------CcceeEEEec--------CCCc------------chhheecccCcEEEEEECCCCCEE
Confidence            210                   0000000000        0000            000122344567888899999999


Q ss_pred             cccCCCCCCCCCCCcccC
Q 006909          553 GSATWPAEKLPLWDVTID  570 (626)
Q Consensus       553 ~s~~~~d~~i~vwd~~~~  570 (626)
                      ++++. |+.|++|++..+
T Consensus       331 ~s~~~-dg~v~iw~~~~~  347 (369)
T 3zwl_B          331 ASGGE-DGFIRLHHFEKS  347 (369)
T ss_dssp             EEEET-TSEEEEEEECHH
T ss_pred             EEEcC-CCeEEEEECccc
Confidence            99888 799999999876

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.4e-35  Score=301.17  Aligned_cols=288  Identities=16%  Similarity=0.208  Sum_probs=230.8

Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      .....+.+|...|++++|+|++ +|++|+.|++|++||..++.....+. |...|.+++|+| ++.++++|+.|+.+++|
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEE
Confidence            4567889999999999999998 99999999999999999888877775 778999999999 99999999999999999


Q ss_pred             eCCCC-------eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          337 GVCEK-------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       337 d~~~~-------~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      ++...       ....+..|...|.+++|+|++..|++++.|++|++||+.+++.... +      ..|...|.+++|+|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~-~------~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS-F------HGHGADVLCLDLAP  206 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-E------ECCSSCEEEEEECC
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE-E------cCCCCCeEEEEEEe
Confidence            98643       2344567899999999999999999999999999999988765322 2      23457899999988


Q ss_pred             CC-CcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccce
Q 006909          410 DE-SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC  488 (626)
Q Consensus       410 ~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  488 (626)
                      +. +.+|++++.|++|++||+++.........|...|.+++|+|++++|++++.|++|++||+....             
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~-------------  273 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-------------  273 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------------
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------------
Confidence            52 2699999999999999988665555555688999999999999999999999999999987631             


Q ss_pred             eeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909          489 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  568 (626)
Q Consensus       489 ~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~  568 (626)
                              .+.+ +...                             .....+..++|+|+|+++++++. |+.|++||+.
T Consensus       274 --------~~~~-~~~~-----------------------------~~~~~~~~~~~s~~g~~l~~g~~-d~~i~vwd~~  314 (354)
T 2pbi_B          274 --------EVAI-YSKE-----------------------------SIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVL  314 (354)
T ss_dssp             --------EEEE-ECCT-----------------------------TCCSCEEEEEECTTSSEEEEEET-TSCEEEEETT
T ss_pred             --------EEEE-EcCC-----------------------------CcccceeEEEEeCCCCEEEEEEC-CCcEEEEECC
Confidence                    0000 0000                             00112456789999999999887 7999999998


Q ss_pred             cCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeee
Q 006909          569 IDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFH  618 (626)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~  618 (626)
                      ++.           .......|...+  .++++ ||.+||||+.||+|++|+
T Consensus       315 ~~~-----------~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          315 KGS-----------RVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TCS-----------EEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred             CCc-----------eEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence            772           122223344433  34556 899999999999999995

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.9e-35  Score=327.03  Aligned_cols=312  Identities=16%  Similarity=0.236  Sum_probs=240.0

Q ss_pred             cccccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      +.....|++|++.|++++|+|++ ++|+||+.||+|+||++.+....                                 
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~---------------------------------  418 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA---------------------------------  418 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---------------------------------
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---------------------------------
Confidence            34455789999999999999875 69999999999999999763210                                 


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                             .......+.+|...|.+++|+|++ +|++|+.|++|+|||+.++.++..+ .|...|.+++|+| ++++|++|
T Consensus       419 -------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~  490 (694)
T 3dm0_A          419 -------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSA  490 (694)
T ss_dssp             -------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred             -------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEE
Confidence                   012346788999999999999988 8999999999999999999988877 5999999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEEe----ccCCCCeEEEEEeeCC--CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          328 SIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~~----~~~~~~i~~i~~sp~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      +.|++|++||+........    ..|...|.+++|+|++  ..+++++.|++|++||+++......       ...|...
T Consensus       491 s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~-------~~~h~~~  563 (694)
T 3dm0_A          491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-------LAGHTGY  563 (694)
T ss_dssp             ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-------ECCCSSC
T ss_pred             eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-------EcCCCCC
Confidence            9999999999877655443    3678889999999987  5899999999999999987764322       2234589


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  481 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~  481 (626)
                      |++++|+|++ .+|++++.|+.|++||+.+........ +...+.+++|+|++.+|++++ |+.|+|||+.++.....  
T Consensus       564 v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~--  638 (694)
T 3dm0_A          564 VSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVED--  638 (694)
T ss_dssp             EEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE--
T ss_pred             EEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhh--
Confidence            9999999997 799999999999999998766554443 456899999999999888876 55699999987521110  


Q ss_pred             cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCC
Q 006909          482 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK  561 (626)
Q Consensus       482 ~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~  561 (626)
                               +..+..........                       ........+...+++++|||||++|++++. |+.
T Consensus       639 ---------~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~spdg~~l~sgs~-Dg~  685 (694)
T 3dm0_A          639 ---------LKVDLKAEAEKADN-----------------------SGPAATKRKVIYCTSLNWSADGSTLFSGYT-DGV  685 (694)
T ss_dssp             ---------ECCCCC---------------------------------------CCCCEEEEEECTTSSEEEEEET-TSE
T ss_pred             ---------hccccccccccccc-----------------------cccccCCceeEEeeeEEEcCCCCEEEEEcC-CCe
Confidence                     00000000000000                       000001112224678899999999999998 899


Q ss_pred             CCCCCcc
Q 006909          562 LPLWDVT  568 (626)
Q Consensus       562 i~vwd~~  568 (626)
                      |++|++.
T Consensus       686 i~iW~i~  692 (694)
T 3dm0_A          686 IRVWGIG  692 (694)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            9999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.8e-35  Score=310.77  Aligned_cols=296  Identities=13%  Similarity=0.143  Sum_probs=220.8

Q ss_pred             ccccccccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          172 YTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      .+.+...+|...|+||+|+| ++++||+|+.||+|+|||+.++..                                   
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-----------------------------------  154 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-----------------------------------  154 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-----------------------------------
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-----------------------------------
Confidence            34456678999999999999 567999999999999999976321                                   


Q ss_pred             CccccccCCCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEE
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~  325 (626)
                              .....+.+|.+.|++|+|+| ++ +|++|+.|++|++||++++.......   +...+.+++|+| ++.+|+
T Consensus       155 --------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  225 (435)
T 4e54_B          155 --------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVV  225 (435)
T ss_dssp             --------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEE
T ss_pred             --------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEE
Confidence                    22345668999999999998 44 99999999999999998765544443   344688999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909          326 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      +|+.||.|++||+++..+..+..|...|.+++|+|++. ++++|+.|+.|++||++..........    ...|...|++
T Consensus       226 ~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~----~~~h~~~v~~  301 (435)
T 4e54_B          226 TGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY----SLPHRHPVNA  301 (435)
T ss_dssp             EECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB----CCBCSSCEEE
T ss_pred             EEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE----eeeccccccc
Confidence            99999999999999888778889999999999999886 677899999999999987654332111    2345689999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCC------CCeEEEEEcCCCCEEEEEeC------------CccE
Q 006909          405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS------GSQMSASFTTTGKHIISIGD------------DCRV  466 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~sp~g~~l~s~s~------------dg~I  466 (626)
                      ++|+|+| .+|++++.|+.|+|||+.+.........|.      ..+..+.|+|++.++++++.            ++.|
T Consensus       302 ~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i  380 (435)
T 4e54_B          302 ACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTI  380 (435)
T ss_dssp             CCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCE
T ss_pred             eeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEE
Confidence            9999998 799999999999999987543332222121      12344567777766666542            2356


Q ss_pred             EEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCc-cc
Q 006909          467 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGS-WF  545 (626)
Q Consensus       467 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~  545 (626)
                      ++||..++                     ..+...                               ..++...+.++ +|
T Consensus       381 ~iwd~~~g---------------------~~~~~l-------------------------------~~~~~~~v~s~~~f  408 (435)
T 4e54_B          381 DVFDGNSG---------------------KMMCQL-------------------------------YDPESSGISSLNEF  408 (435)
T ss_dssp             EEECSSSC---------------------CEEEEE-------------------------------CCSSCCCCCCEEEE
T ss_pred             EEEECCCC---------------------cEEEEE-------------------------------eCCCCCcEEEEEEE
Confidence            66665442                     111111                               11222334555 68


Q ss_pred             cCCCCcccccCCCCCCCCCCCcccC
Q 006909          546 SNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       546 s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      +|||++|++++  ++.|++|++.++
T Consensus       409 spdg~~lasg~--d~~i~iW~~~~g  431 (435)
T 4e54_B          409 NPMGDTLASAM--GYHILIWSQQEA  431 (435)
T ss_dssp             CTTSSCEEEEC--SSEEEECCCC--
T ss_pred             CCCCCEEEEEc--CCcEEEEECCcC
Confidence            99999998876  578999999887

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-34  Score=306.61  Aligned_cols=322  Identities=17%  Similarity=0.311  Sum_probs=252.1

Q ss_pred             ccccccccccCcE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          172 YTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       172 ~~~~~l~~H~~~V-~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      .....+.+|.+.| .++.|  ++++|++|+.||+|++||+.+                                      
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~--------------------------------------  151 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN--------------------------------------  151 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT--------------------------------------
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC--------------------------------------
Confidence            4556889999885 66666  567999999999999999987                                      


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEee-CCCCEEEEEe
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP-IDDNYFISGS  328 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p-~~~~~l~s~s  328 (626)
                             .+.+..+.+|.+.|.+++|+|++.|++|+.||+|++||+.+++++..+. |...|.+++|++ .++.++++|+
T Consensus       152 -------~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s  224 (464)
T 3v7d_B          152 -------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS  224 (464)
T ss_dssp             -------TEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEE
T ss_pred             -------CcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEc
Confidence                   3456778899999999999999999999999999999999999998886 899999999995 2678999999


Q ss_pred             CCCcEEEEeCCCCe------------------------EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909          329 IDGKVRIWGVCEKR------------------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  384 (626)
Q Consensus       329 ~dg~v~iwd~~~~~------------------------~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~  384 (626)
                      .||+|++||+.++.                        .....+|...+.++  +++++++++|+.||.|++||+.+...
T Consensus       225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~  302 (464)
T 3v7d_B          225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC  302 (464)
T ss_dssp             TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE
T ss_pred             CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            99999999998765                        22355677777766  68899999999999999999987765


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      ... +      ..|...|++++|+|++ .++++++.|+.|++||+.+.........|...|.+++|+  +++|++++.||
T Consensus       303 ~~~-~------~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg  372 (464)
T 3v7d_B          303 LYI-L------SGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADG  372 (464)
T ss_dssp             EEE-E------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred             EEE-e------cCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence            322 1      2345889999999997 799999999999999988766666666689999999997  68999999999


Q ss_pred             cEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCcc
Q 006909          465 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSW  544 (626)
Q Consensus       465 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  544 (626)
                      .|++||+.+...                    .....                                  +...+..++
T Consensus       373 ~v~vwd~~~~~~--------------------~~~~~----------------------------------~~~~~~~~~  398 (464)
T 3v7d_B          373 SIRGWDANDYSR--------------------KFSYH----------------------------------HTNLSAITT  398 (464)
T ss_dssp             EEEEEETTTCCE--------------------EEEEE----------------------------------CTTCCCEEE
T ss_pred             cEEEEECCCCce--------------------eeeec----------------------------------CCCCccEEE
Confidence            999999986310                    00000                                  011234456


Q ss_pred             ccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEecCCceEeeee
Q 006909          545 FSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH  618 (626)
Q Consensus       545 ~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~  618 (626)
                      |+|+++++++++  ++.|++||+.++.          ........+...+..++...+.++++++.||.+.+|-
T Consensus       399 ~~~~~~~l~~~~--dg~i~iwd~~~g~----------~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          399 FYVSDNILVSGS--ENQFNIYNLRSGK----------LVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEECSSEEEEEE--TTEEEEEETTTCC----------EEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             EEeCCCEEEEec--CCeEEEEECCCCc----------EEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence            888888888877  6899999999882          1111233444445555554456666777888766654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.1e-35  Score=332.12  Aligned_cols=372  Identities=18%  Similarity=0.183  Sum_probs=281.7

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      ...+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+                                       
T Consensus        46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~---------------------------------------   86 (814)
T 3mkq_A           46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT---------------------------------------   86 (814)
T ss_dssp             EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred             ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------------------------------------
Confidence            34567789999999999999999999999999999999987                                       


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC-eeeEee-cCCCCeEEEEEeeCCCCEEEEEe
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~-~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                            ...+..+.+|...|++++|+|++ +|++++.|++|++||+.++ .....+ .|...|.+++|+|.+++.|++++
T Consensus        87 ------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           87 ------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             ------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             ------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence                  34467788899999999999998 8999999999999999887 555555 48899999999986678999999


Q ss_pred             CCCcEEEEeCCCCeEEE-e-ccCCCCeEEEEEee--CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909          329 IDGKVRIWGVCEKRVVD-W-ADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~-~-~~~~~~i~~i~~sp--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      .||+|++||+.++.... . ..+...+.+++|+|  ++.++++++.||.|++||+.+..... .+.      .|...|++
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~------~~~~~v~~  233 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA-TLE------GHMSNVSF  233 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE-EEE------CCSSCEEE
T ss_pred             CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE-EEc------CCCCCEEE
Confidence            99999999998765433 3 33448899999999  99999999999999999998776432 222      23478999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC--EEEEEeCCccEEEEECCCCCCCCC---
Q 006909          405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDELCFPSS---  479 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~s~s~dg~I~iwd~~~~~~~~~---  479 (626)
                      ++|+|++ .++++++.||.|++||..+.........+...+.+++|+|++.  ++++++ ++.+.+|++........   
T Consensus       234 ~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  311 (814)
T 3mkq_A          234 AVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDP  311 (814)
T ss_dssp             EEECSSS-SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECS
T ss_pred             EEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECC
Confidence            9999998 6999999999999999886555555555788999999999997  455555 66788888765311000   


Q ss_pred             -----------------------------------------CccCCccceeeeccCCcEEEE------------------
Q 006909          480 -----------------------------------------KQKNSVRSCEHFFSEGVSVAV------------------  500 (626)
Q Consensus       480 -----------------------------------------~~~~~~~~~~~~~~~g~~~av------------------  500 (626)
                                                               ........++.|+|+|..+++                  
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~  391 (814)
T 3mkq_A          312 VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA  391 (814)
T ss_dssp             SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred             CCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC
Confidence                                                     001112356678888876654                  


Q ss_pred             -------ecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCC---CcccccCCCCCCCCCCCcccC
Q 006909          501 -------QWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG---PCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       501 -------~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~s~~~~d~~i~vwd~~~~  570 (626)
                             +|+|++..++....+   +.+.+|..      ...+...+..++|+|||   .++++++. ++.|++||+.++
T Consensus       392 ~~~i~~~~~spdg~~la~~~~~---g~v~l~~~------~~~~~~~v~~~~~s~dg~~~~~l~~~~~-d~~v~~~d~~~~  461 (814)
T 3mkq_A          392 FGKCQDFVWGPDSNSYALIDET---GQIKYYKN------FKEVTSWSVPMHSAIDRLFSGALLGVKS-DGFVYFFDWDNG  461 (814)
T ss_dssp             EEECSEEEECTTSSCEEEECTT---CCEEEEET------TEECTTCCCCCSSCCCEEECSSSEEEEE-TTEEEEECTTTC
T ss_pred             CCceEEEEEeCCCCeEEEEeCC---CcEEEEEC------CCCccceEEcCCcCccceecceEEEEec-CCEEEEEECCcC
Confidence                   355555555443332   23455543      33455568889999998   57777776 789999999887


Q ss_pred             CCCCCCChhhHHHHhhhccCCccccccccccceEEEEe------cCCceEeeeeec
Q 006909          571 SDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTA------GCDGMIKTFHNY  620 (626)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~------g~Dg~Irvw~~~  620 (626)
                      .           .......+.. ...+++ ||++|+++      +.|+.+.+|.+-
T Consensus       462 ~-----------~~~~~~~~~~-~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~~~  504 (814)
T 3mkq_A          462 T-----------LVRRIDVNAK-DVIWSD-NGELVMIVNTNSNGDEASGYTLLFNK  504 (814)
T ss_dssp             C-----------EEEEESSCEE-EEEECT-TSSEEEEEECCCSSCSCSEEEEEECH
T ss_pred             c-----------EEEEEecCCC-EEEEcC-CCCEEEEEEcCcccCCceEEEEEech
Confidence            2           1222222222 456666 89999999      777777777643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.8e-34  Score=288.22  Aligned_cols=245  Identities=18%  Similarity=0.335  Sum_probs=205.0

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .+.+++|...|++++|+|+|++|++|+.|++|+|||+.+                                         
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-----------------------------------------   96 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-----------------------------------------   96 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------------------------
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-----------------------------------------
Confidence            456889999999999999999999999999999999987                                         


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeC-----CCCEEEEE
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-----DDNYFISG  327 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~s~  327 (626)
                          ...+..+.+|...|.+++|+|++ +|++|+.|++|++||+..........|...|.+++|.|.     ++..++++
T Consensus        97 ----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~  172 (319)
T 3frx_A           97 ----GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA  172 (319)
T ss_dssp             ----TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred             ----CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence                34467788999999999999987 899999999999999985544444469999999999982     23489999


Q ss_pred             eCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          328 SIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +.|++|++||+++.+.. .+.+|...|.+++|+|+|++|++|+.||.|++||+.+.+.... +.  .     ...|.+++
T Consensus       173 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~-~~--~-----~~~v~~~~  244 (319)
T 3frx_A          173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT-LS--A-----QDEVFSLA  244 (319)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE-EE--C-----CSCEEEEE
T ss_pred             eCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-ec--C-----CCcEEEEE
Confidence            99999999999987755 4678999999999999999999999999999999988765332 22  1     26799999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCCcceeeeee--------cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          407 FSRDESQRIMITSEDSKLRILDGVDVIHKFKG--------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      |+|++ .++++++. +.+++|++.........        ..+...+.+++|+|+|++|++|+.|+.|+|||+.+
T Consensus       245 ~sp~~-~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          245 FSPNR-YWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             ECSSS-SEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             EcCCC-CEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            99997 67776664 56999997643322211        12356789999999999999999999999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.4e-34  Score=292.53  Aligned_cols=246  Identities=18%  Similarity=0.373  Sum_probs=203.8

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .+.+.+|.+.|++++|+|++.+|++|+.|++|++||+.+                                         
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-----------------------------------------  107 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-----------------------------------------  107 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-----------------------------------------
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-----------------------------------------
Confidence            456789999999999999999999999999999999987                                         


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCC--------
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDD--------  321 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~--------  321 (626)
                          ...+..+.+|...|.+++|+|++ +|++++.|++|++||+.........   .|...|.+++|+| ++        
T Consensus       108 ----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~  182 (343)
T 2xzm_R          108 ----GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQP  182 (343)
T ss_dssp             ----SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCS
T ss_pred             ----CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCC
Confidence                34467788999999999999988 8999999999999999854443333   4888999999999 65        


Q ss_pred             --CEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909          322 --NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  399 (626)
Q Consensus       322 --~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  399 (626)
                        .+|++++.|++|++||........+..|...|.+++|+|+|++|++|+.||.|++||+...........       +.
T Consensus       183 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------~~  255 (343)
T 2xzm_R          183 FAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-------AG  255 (343)
T ss_dssp             SCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-------CS
T ss_pred             CCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-------CC
Confidence              799999999999999976655666788999999999999999999999999999999954443322221       12


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce--e--eeee---------cCCCCCeEEEEEcCCCCEEEEEeCCccE
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--H--KFKG---------LPKSGSQMSASFTTTGKHIISIGDDCRV  466 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~--~--~~~~---------~~~~~~v~~~~~sp~g~~l~s~s~dg~I  466 (626)
                      ..|.+++|+|++ .+++ ++.|+.|++||+.+..  .  .+..         ..|...+.+++|+|+|++|++|+.||.|
T Consensus       256 ~~v~~v~~sp~~-~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v  333 (343)
T 2xzm_R          256 STINQIAFNPKL-QWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI  333 (343)
T ss_dssp             SCEEEEEECSSS-CEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEE
T ss_pred             CcEEEEEECCCC-CEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceE
Confidence            579999999997 4554 5568889999976422  1  2221         1467789999999999999999999999


Q ss_pred             EEEECCCC
Q 006909          467 YVWNYDEL  474 (626)
Q Consensus       467 ~iwd~~~~  474 (626)
                      ++|+++++
T Consensus       334 ~~w~~~~g  341 (343)
T 2xzm_R          334 RTFSFETS  341 (343)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEcc
Confidence            99998753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.4e-35  Score=297.23  Aligned_cols=317  Identities=14%  Similarity=0.154  Sum_probs=244.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      |.+.|.+++|+|||++++++..++.+.+|....                                             ..
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~---------------------------------------------~~   42 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR---------------------------------------------HA   42 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS---------------------------------------------EE
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCC---------------------------------------------cc
Confidence            677899999999999999888777665553332                                             11


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE---ee---cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN---VF---DHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~---~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                      ......+|...|++++|+|++ +|++++ |+.|++||+.++....   .+   .|...|.+++|+| ++++|++++.|+.
T Consensus        43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~  120 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSE
T ss_pred             ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCc
Confidence            123334799999999999998 777777 9999999998765332   22   5888999999999 9999999999999


Q ss_pred             EEEEeCCCCe---EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          333 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       333 v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      |++||+.+++   ......+...|.+++|+|+++++++++.||.|++||+.+.+.... +      ..|...|.+++|+|
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~------~~~~~~i~~~~~~~  193 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ-F------QGHTDGASCIDISN  193 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-E------CCCSSCEEEEEECT
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-e------ecccCceEEEEECC
Confidence            9999998876   334667888999999999999999999999999999987754322 2      22457899999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909          410 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  489 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  489 (626)
                      ++ .++++++.|+.|++||+.+....... .+...+.+++|+|++++|++++.|+.|++||+.+......          
T Consensus       194 ~~-~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~----------  261 (337)
T 1gxr_A          194 DG-TKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL----------  261 (337)
T ss_dssp             TS-SEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE----------
T ss_pred             CC-CEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE----------
Confidence            97 79999999999999998865544333 3678899999999999999999999999999987632111          


Q ss_pred             eeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCC-cccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909          490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV  567 (626)
Q Consensus       490 ~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~  567 (626)
                       ..+.+.+..++|+|++..++....+   +.+.+|+...... ....+...+.+++|+||++++++++. ++.|++|++
T Consensus       262 -~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~  335 (337)
T 1gxr_A          262 -HLHESCVLSLKFAYCGKWFVSTGKD---NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG-DKKATVYEV  335 (337)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSCEEEEEE
T ss_pred             -cCCccceeEEEECCCCCEEEEecCC---CcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecC-CCeEEEEEE
Confidence             1123445566666666655544433   3355555533322 22345667899999999999999888 799999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.5e-34  Score=293.87  Aligned_cols=248  Identities=17%  Similarity=0.299  Sum_probs=201.2

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      ..+|...|++++|+|+++ +++++.||+|+|||+.+++..                                        
T Consensus        90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~----------------------------------------  128 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESL----------------------------------------  128 (357)
T ss_dssp             EEECSSCEEEEEEETTTE-EEEEETTSCEEEC------------------------------------------------
T ss_pred             cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecccccee----------------------------------------
Confidence            457999999999999986 556788999999999874321                                        


Q ss_pred             cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                       ........+|...|++++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+|....++++++.|++|+
T Consensus       129 -~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~  207 (357)
T 4g56_B          129 -LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL  207 (357)
T ss_dssp             -CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred             -EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceE
Confidence             11123455899999999999998 89999999999999999999998885 8999999999993346899999999999


Q ss_pred             EEeCCCCeEEE---eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          335 IWGVCEKRVVD---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       335 iwd~~~~~~~~---~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      +||+++++...   ...+...+.+++|+|+ +.+|++|+.|+.|++||+++.+.... +      ..+...|++++|+|+
T Consensus       208 ~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~------~~~~~~v~~l~~sp~  280 (357)
T 4g56_B          208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-S------AVHSQNITGLAYSYH  280 (357)
T ss_dssp             ECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-E------CCCSSCEEEEEECSS
T ss_pred             EEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-E------eccceeEEEEEEcCC
Confidence            99999877554   3456678999999997 56888999999999999988765332 2      234578999999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCC
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +..+|++++.|++|+|||+..... +....|...|++++|+| ++++|++++.||+|++|++...
T Consensus       281 ~~~~lasgs~D~~i~iwd~~~~~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          281 SSPFLASISEDCTVAVLDADFSEV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SSCCEEEEETTSCEEEECTTSCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            877899999999999999876533 33456899999999998 7999999999999999999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=316.79  Aligned_cols=289  Identities=11%  Similarity=0.043  Sum_probs=203.5

Q ss_pred             eeeccCccceEEEEEcCC-------CeEEEEeCCCcEEEeccCCCeee-----------Eee-cCCCCeEEEEEeeCCCC
Q 006909          262 QELHGHKGDVLDLAWSNS-------NYLLSCSMDKTVRMWQVGCNQCL-----------NVF-DHHNYVTCVQFNPIDDN  322 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~-------~~l~s~s~d~~v~iwd~~~~~~~-----------~~~-~~~~~v~~~~~~p~~~~  322 (626)
                      ..+.+|.+.|.+++|+|+       ++|++++.||+|++||+.++...           ..+ .|...|++++|+| + .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~  278 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-T  278 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-S
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-C
Confidence            345678899999999986       38999999999999999766421           233 4888999999997 4 5


Q ss_pred             EEEEEeCCCcEEEEeCCCCe--EEEeccCCCCeEEE--EEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeecccccc
Q 006909          323 YFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAI--CYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  397 (626)
Q Consensus       323 ~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~i~~i--~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  397 (626)
                      .|++|+.||+|++||++++.  ...+..|...|.++  .|+|+| ++|++|+.|++|++||+++...... +..+.    
T Consensus       279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~-~~~~~----  353 (524)
T 2j04_B          279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT-TVSRF----  353 (524)
T ss_dssp             EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE-EEEEC----
T ss_pred             eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc-ccccc----
Confidence            89999999999999998753  23467899999999  568888 8999999999999999987654322 11111    


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  477 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~  477 (626)
                      ....|.+++|+|++ ..+++++.|++|++||++..........|...|++++|+|+|++|++|+.|++|++||+......
T Consensus       354 ~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~  432 (524)
T 2j04_B          354 RGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH  432 (524)
T ss_dssp             SCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT
T ss_pred             ccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc
Confidence            11357899999997 68999999999999998764432223348899999999999999999999999999998764221


Q ss_pred             CCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccc-cCCCCcccCCCcccCCccccCCCC---ccc
Q 006909          478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN-LETAPWIRDSERFSLGSWFSNDGP---CRG  553 (626)
Q Consensus       478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~s~dg~---~l~  553 (626)
                      .......      ......+..++|+|++..+.... +   ..+..|.. -.....+.++...|.+++|+|++.   .++
T Consensus       433 ~~~~~~~------~~~~~~v~~v~~sp~g~~~~~~~-~---~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lA  502 (524)
T 2j04_B          433 GIKNSSA------TQKSLRLWKWDYSIKDDKYRIDS-S---YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYA  502 (524)
T ss_dssp             CC------------CCCCEEEECBCCSSSCEEEECC-C---CCCCC-------------CCCSCCCEEECCSTTTTTEEE
T ss_pred             ccccCcc------ceeeeEEEEeccCCCCCeEEccC-C---ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHH
Confidence            1000000      00111233555566555332111 0   00111211 112234567778899999999965   788


Q ss_pred             ccCCCCCCCCCCCccc
Q 006909          554 SATWPAEKLPLWDVTI  569 (626)
Q Consensus       554 s~~~~d~~i~vwd~~~  569 (626)
                      +++. ++.|++|++.-
T Consensus       503 sg~~-~g~vrlw~l~~  517 (524)
T 2j04_B          503 FSNS-AGLLTLEYLSL  517 (524)
T ss_dssp             EECT-TSEEEEEECSC
T ss_pred             hhcc-CceEEEEEccc
Confidence            8887 79999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.9e-36  Score=307.80  Aligned_cols=335  Identities=11%  Similarity=0.116  Sum_probs=223.7

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      ++.|.++|++++|+|+|++||+|+.||.|+|||+.++.                                          
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------------------------------------------   44 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------------------------------------------   44 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------------------------------------------
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------------------------------------------
Confidence            44578899999999999999999999999999998631                                          


Q ss_pred             cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe---eeEe-ecCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNV-FDHHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~---~~~~-~~~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                       ...+..+.+|...|.+++|+|++ +|++++.|++|++||+.++.   .... ..|...|.+++|+| ++++|++++.|+
T Consensus        45 -~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  122 (377)
T 3dwl_C           45 -WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGAR  122 (377)
T ss_dssp             -EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSS
T ss_pred             -eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCC
Confidence             03456778899999999999987 89999999999999999877   3333 36999999999999 999999999999


Q ss_pred             cEEEEeCCCCe----EEEecc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee-----------eEEeecccc
Q 006909          332 KVRIWGVCEKR----VVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----------EKVDFHDRK  395 (626)
Q Consensus       332 ~v~iwd~~~~~----~~~~~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~-----------~~~~~~~~~  395 (626)
                      .|++||+++++    ...+.. |...|.+++|+|++++|++++.||.|++||+.......           .........
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (377)
T 3dwl_C          123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY  202 (377)
T ss_dssp             CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC
T ss_pred             eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc
Confidence            99999999876    344555 89999999999999999999999999999996432111           000111112


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee----eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                       .|...|++++|+|++ .+|++++.|+.|++||+.+...    ......|...|.+++|+|++++|++++.++.+ +|+.
T Consensus       203 -~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          203 -PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             -CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             -cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence             566899999999998 7999999999999999775433    33334478899999999999999999866655 7766


Q ss_pred             CCCCCCCCCccCCccceeeec--c-----CCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCcc
Q 006909          472 DELCFPSSKQKNSVRSCEHFF--S-----EGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSW  544 (626)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~--~-----~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  544 (626)
                      .....................  +     .+...++.++.....+.........        .........|...+++++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~H~~~i~~~~  351 (377)
T 3dwl_C          280 NESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSS--------QSISSLPTVHQNMIATLR  351 (377)
T ss_dssp             CC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------------------------CCCSSSCSSCEEEEE
T ss_pred             CCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccc--------ccccccCccccceeEEEe
Confidence            533111111100000000000  0     0112233233222222211111000        011223445777788888


Q ss_pred             ccCCCC----cccccCCCCCCCCCCCc
Q 006909          545 FSNDGP----CRGSATWPAEKLPLWDV  567 (626)
Q Consensus       545 ~s~dg~----~l~s~~~~d~~i~vwd~  567 (626)
                      +.++..    .+++++. |+.|++||+
T Consensus       352 ~~~~~~~~~~~~~s~g~-Dg~i~iWdl  377 (377)
T 3dwl_C          352 PYAGTPGNITAFTSSGT-DGRVVLWTL  377 (377)
T ss_dssp             EEEEETTEEEEEEEEET-TSEEEEECC
T ss_pred             ccCCCCCceEEEEeecC-CCcEEEecC
Confidence            766543    4888888 899999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-34  Score=298.49  Aligned_cols=264  Identities=22%  Similarity=0.355  Sum_probs=216.7

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      .....+.+|...|.+++|+|+|++||+|+.|+.|+||++.+.....                                  
T Consensus        99 ~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~----------------------------------  144 (380)
T 3iz6_a           99 QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD----------------------------------  144 (380)
T ss_dssp             EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC----------------------------------
T ss_pred             ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc----------------------------------
Confidence            3456678999999999999999999999999999999997521100                                  


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEee------cCCCCeEEEEEeeCCCCE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF------DHHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~------~~~~~v~~~~~~p~~~~~  323 (626)
                          ........+.+|.+.|.++.|+|++  .|++|+.|++|++||+.+++.+..+      .|...|.+++|+|.++++
T Consensus       145 ----~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  220 (380)
T 3iz6_a          145 ----GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM  220 (380)
T ss_dssp             ----CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred             ----CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence                0012345678999999999999864  7999999999999999999988776      378899999998878899


Q ss_pred             EEEEeCCCcEEEEeCCC-C-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          324 FISGSIDGKVRIWGVCE-K-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~-~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      |++|+.|++|++||++. + ....+.+|...|.+++|+|++++|++|+.||+|++||++++...............+...
T Consensus       221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  300 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI  300 (380)
T ss_dssp             EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred             EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence            99999999999999974 3 344577899999999999999999999999999999999876533211111111222345


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |++++|+|+| .+|++|+.||.|++||..........    ..|...|.+++|+|+|++|++|+.|++|+||++.+.
T Consensus       301 v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          301 VTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             CSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             eEEEEECCCC-CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            8999999998 79999999999999997654433332    458889999999999999999999999999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-34  Score=299.09  Aligned_cols=255  Identities=20%  Similarity=0.295  Sum_probs=213.7

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      +.+.+.+|.+.|++++|+|++++||+|+.||.|+||++....                                      
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--------------------------------------   44 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--------------------------------------   44 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--------------------------------------
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--------------------------------------
Confidence            356788999999999999999999999999999999997421                                      


Q ss_pred             cccccCCCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCC--CCEE
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYF  324 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~--~~~l  324 (626)
                           ...+..+.+|...|++++|+++  + +|++++.|+.|++||+.+++  .+..+ .|...|.+++|+| +  +.+|
T Consensus        45 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l  118 (379)
T 3jrp_A           45 -----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLL  118 (379)
T ss_dssp             -----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEE
T ss_pred             -----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEE
Confidence                 2345678899999999999865  5 99999999999999999886  44555 4889999999999 7  8999


Q ss_pred             EEEeCCCcEEEEeCCCC---eEEEeccCCCCeEEEEEee-------------CCCEEEEEecCCcEEEEEcCCCceeeeE
Q 006909          325 ISGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEK  388 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~~~---~~~~~~~~~~~i~~i~~sp-------------~g~~l~~g~~dg~i~i~d~~~~~~~~~~  388 (626)
                      ++++.|+.|++||++.+   .......|...|.+++|+|             ++.++++++.||.|++||++........
T Consensus       119 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  198 (379)
T 3jrp_A          119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  198 (379)
T ss_dssp             EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence            99999999999999876   3445678899999999999             6999999999999999999876543321


Q ss_pred             EeeccccccCCCCeEEEEEcCCC--CcEEEEEeCCCcEEEEeCCcc-----eeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909          389 VDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDV-----IHKFKGLPKSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       389 ~~~~~~~~~~~~~i~~l~~s~~~--~~~l~~~s~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      ..   ....|...|++++|+|++  ..+|++++.||.|++||+...     ........+...|.+++|+|++++|++++
T Consensus       199 ~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          199 ES---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  275 (379)
T ss_dssp             EE---EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EE---EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence            11   123346899999999993  389999999999999997753     23333445788999999999999999999


Q ss_pred             CCccEEEEECCCC
Q 006909          462 DDCRVYVWNYDEL  474 (626)
Q Consensus       462 ~dg~I~iwd~~~~  474 (626)
                      .||.|++|++...
T Consensus       276 ~dg~i~iw~~~~~  288 (379)
T 3jrp_A          276 GDNKVTLWKENLE  288 (379)
T ss_dssp             SSSSEEEEEEEET
T ss_pred             CCCcEEEEeCCCC
Confidence            9999999999853

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.5e-35  Score=304.98  Aligned_cols=333  Identities=12%  Similarity=0.112  Sum_probs=242.9

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      ..+++++|+|+|++|++|+.||.|++||+.+..                                             ..
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~---------------------------------------------~~   91 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRD---------------------------------------------GS   91 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEE---------------------------------------------TT
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccc---------------------------------------------ee
Confidence            445689999999999999999999999988632                                             22


Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  339 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~  339 (626)
                      ..+..| ..+....|++++ +|++++.|+.|++||+.+++....+ .|...|++++|+| ++++|++|+.|++|++||+.
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~  169 (420)
T 3vl1_A           92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVK  169 (420)
T ss_dssp             TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence            333344 344555678887 8999999999999999999998887 6999999999999 99999999999999999998


Q ss_pred             CCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc-c-----------------cccCCC
Q 006909          340 EKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-R-----------------KKTSGN  400 (626)
Q Consensus       340 ~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-~-----------------~~~~~~  400 (626)
                      +++.. .+..|...|.+++|+|++++|++++.||.|++||+++.+.... +..+. .                 ...+..
T Consensus       170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT-FNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE-ECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE-eecCCCCCCCccEEEEecCCcceeeecccC
Confidence            87654 4667999999999999999999999999999999988765332 21110 0                 001124


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCCCCCC
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELCFPS  478 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~~  478 (626)
                      .+++++|+|++ .+|++++.||.|++||+......... ..|...|.+++|+|+++ +|++++.||.|++||+.++..+.
T Consensus       249 ~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~  327 (420)
T 3vl1_A          249 KKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV  327 (420)
T ss_dssp             CCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred             cccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch
Confidence            45555567887 79999999999999998865544443 34678999999999999 99999999999999999863321


Q ss_pred             ---CCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCC----c
Q 006909          479 ---SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGP----C  551 (626)
Q Consensus       479 ---~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~----~  551 (626)
                         ..+......++ +.+++..++++-......+|.+.........   ...........+...+..++|+||++    .
T Consensus       328 ~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l  403 (420)
T 3vl1_A          328 GEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPA---IEFETPTFLVSNDDAVSQFCYVSDDESNGEV  403 (420)
T ss_dssp             EEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCE---ECTTSCEEECCSSCCCCEEEEECCSSSSCEE
T ss_pred             hhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccc---eeccCccEEccCCcceEEEEEccCCCCcceE
Confidence               11223333333 3334555555444444445544432111100   00122234556677799999999999    4


Q ss_pred             ccccCCCCCCCCCCCccc
Q 006909          552 RGSATWPAEKLPLWDVTI  569 (626)
Q Consensus       552 l~s~~~~d~~i~vwd~~~  569 (626)
                      +++++  ++.+.+|++..
T Consensus       404 ~a~g~--~g~~~~~~~~~  419 (420)
T 3vl1_A          404 LEVGK--NNFCALYNLSN  419 (420)
T ss_dssp             EEEET--TTEEEEEESCC
T ss_pred             EEEcC--CceEEEEeccC
Confidence            44444  48899998753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=295.24  Aligned_cols=351  Identities=14%  Similarity=0.202  Sum_probs=232.3

Q ss_pred             cccccccccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          171 LYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      ......+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.........                           
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------------------------   85 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK---------------------------   85 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC---------------------------
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc---------------------------
Confidence            344566788999999999999 9999999999999999999874321110000                           


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeC--CCCEEE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI--DDNYFI  325 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~  325 (626)
                        .   ..........+|...|.+++|+| ++ +|++++.|+.|++||+.+++....+.+...+.++.++|.  ++.+++
T Consensus        86 --~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (408)
T 4a11_B           86 --A---VCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA  160 (408)
T ss_dssp             --E---EEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEE
T ss_pred             --c---cccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEE
Confidence              0   00000112246999999999999 55 899999999999999999999999999999999999983  234999


Q ss_pred             EEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEee---------ccc
Q 006909          326 SGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDF---------HDR  394 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~---------~~~  394 (626)
                      +++.|+.|++||+++++.. .+..|...|.+++|+|+++ .+++++.||.|++||++........+..         ...
T Consensus       161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  240 (408)
T 4a11_B          161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA  240 (408)
T ss_dssp             EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred             EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence            9999999999999987654 4567899999999999998 4889999999999999876543332211         111


Q ss_pred             cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecC-----CCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909          395 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLP-----KSGSQMSASFTTTGKHIISIGDDCRVYVW  469 (626)
Q Consensus       395 ~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~g~~l~s~s~dg~I~iw  469 (626)
                      ...|...|++++|+|++ .+|++++.|+.|++||+.+.........     ....+........+..+++++.|+.|++|
T Consensus       241 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  319 (408)
T 4a11_B          241 NTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY  319 (408)
T ss_dssp             SCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEE
T ss_pred             cccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEE
Confidence            23567899999999997 7999999999999999875433222111     11112222223345566777789999999


Q ss_pred             ECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCC
Q 006909          470 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG  549 (626)
Q Consensus       470 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg  549 (626)
                      |+.++.                     .+..                                +..+...+.+++|+|+|
T Consensus       320 d~~~~~---------------------~~~~--------------------------------~~~~~~~v~~~~~s~~~  346 (408)
T 4a11_B          320 TVYSGE---------------------QITM--------------------------------LKGHYKTVDCCVFQSNF  346 (408)
T ss_dssp             ETTTCC---------------------EEEE--------------------------------ECCCSSCEEEEEEETTT
T ss_pred             ECcCCc---------------------ceee--------------------------------eccCCCeEEEEEEcCCC
Confidence            997641                     1110                                11233456778899999


Q ss_pred             CcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEecCCceEeeeeec
Q 006909          550 PCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       550 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                      +++++++. |+.|++||+.++.           +...... ......+.+.......+++.||.|++|.+.
T Consensus       347 ~~l~s~~~-dg~i~iw~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          347 QELYSGSR-DCNILAWVPSLYE-----------PVPDDDE-TTTKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             TEEEEEET-TSCEEEEEECC---------------------------------------------------
T ss_pred             CEEEEECC-CCeEEEEeCCCCC-----------ccCCCCc-eEeccccccccceeecccCccCceeecCCc
Confidence            99999888 7999999999872           1111111 111123333356667789999999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.8e-34  Score=290.94  Aligned_cols=249  Identities=20%  Similarity=0.290  Sum_probs=198.9

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      ..+.+|++.|++++|+|+|++||+|+.|++|+|||+.++..                                       
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------------------------   47 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------------------------   47 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------------------------
Confidence            45679999999999999999999999999999999976311                                       


Q ss_pred             cccCCCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCC--CCEEEE
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS  326 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~--~~~l~s  326 (626)
                          ..+..+.+|...|.+++|+++  + +|++|+.|++|++||+.++.  ....+ .|...|.+++|+| +  +.+|++
T Consensus        48 ----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~las  122 (316)
T 3bg1_A           48 ----ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILAC  122 (316)
T ss_dssp             ----EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEE
T ss_pred             ----EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEE
Confidence                135678899999999999852  4 89999999999999998874  44444 4889999999999 6  789999


Q ss_pred             EeCCCcEEEEeCCCCeE----EEeccCCCCeEEEEEeeC-----------------CCEEEEEecCCcEEEEEcCCCcee
Q 006909          327 GSIDGKVRIWGVCEKRV----VDWADVRDVISAICYIPD-----------------GKGFIVGSITGTCHFYKASGNDLK  385 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~~----~~~~~~~~~i~~i~~sp~-----------------g~~l~~g~~dg~i~i~d~~~~~~~  385 (626)
                      |+.|++|++||++.+..    .....|...+.+++|+|+                 +++|++|+.|+.|++||+......
T Consensus       123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~  202 (316)
T 3bg1_A          123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW  202 (316)
T ss_dssp             ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred             EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence            99999999999987532    234578888999999997                 478999999999999999754311


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCC---CcEEEEEeCCCcEEEEeCCcc------eeeeeecCCCCCeEEEEEcCCCCE
Q 006909          386 LEKVDFHDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGSQMSASFTTTGKH  456 (626)
Q Consensus       386 ~~~~~~~~~~~~~~~~i~~l~~s~~~---~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~sp~g~~  456 (626)
                      ....    ....|...|.+++|+|++   ..+|++++.|++|++|++...      ...+.  .|...|.+++|+|++++
T Consensus       203 ~~~~----~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~  276 (316)
T 3bg1_A          203 KEEQ----KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANI  276 (316)
T ss_dssp             EEEE----CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCC
T ss_pred             ceee----ecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCE
Confidence            1111    133456899999999985   268999999999999997641      12233  36789999999999999


Q ss_pred             EEEEeCCccEEEEECCC
Q 006909          457 IISIGDDCRVYVWNYDE  473 (626)
Q Consensus       457 l~s~s~dg~I~iwd~~~  473 (626)
                      |++++.|++|++|+...
T Consensus       277 las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          277 LAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEESSSCEEEEEECT
T ss_pred             EEEEcCCCeEEEEEECC
Confidence            99999999999999763

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-33  Score=292.88  Aligned_cols=249  Identities=24%  Similarity=0.431  Sum_probs=209.2

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .|...|++++|+|+|++||+|+.||+|+|||+.+                                             .
T Consensus       121 ~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~---------------------------------------------~  155 (393)
T 1erj_A          121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN---------------------------------------------R  155 (393)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT---------------------------------------------T
T ss_pred             CCceeEEEEEECCCCCEEEEEcCCCeEEEEECCC---------------------------------------------C
Confidence            3555799999999999999999999999999987                                             3


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      ..+..+.+|...|.+++|+|++ +|++++.|++|++||+.++++...+.+...+.+++|+|.++++|++|+.|+.|++||
T Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd  235 (393)
T 1erj_A          156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD  235 (393)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred             cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            3456788999999999999987 899999999999999999999998888899999999997889999999999999999


Q ss_pred             CCCCeEEEe--------ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeE-----EeeccccccCCCCeEE
Q 006909          338 VCEKRVVDW--------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-----VDFHDRKKTSGNKITG  404 (626)
Q Consensus       338 ~~~~~~~~~--------~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~i~~  404 (626)
                      ++++.....        .+|...|.+++|+|+|++|++|+.||.|++||+.........     .........|...|.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  315 (393)
T 1erj_A          236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS  315 (393)
T ss_dssp             TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred             CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence            998876543        468889999999999999999999999999999764321110     0000112345678999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC------CCCEEEEEeCCccEEEEECCC
Q 006909          405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT------TGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp------~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      ++|+|++ .+|++++.|+.|++||..+.........|...|.+++|++      ++++|++|+.||+|+||++..
T Consensus       316 ~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          316 VATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9999997 7999999999999999876555555556889999999976      689999999999999999865

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.6e-34  Score=297.25  Aligned_cols=318  Identities=13%  Similarity=0.141  Sum_probs=239.5

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      ...+.+.+|.+.|++++|+|  ++|++|+.||.|+||++.++....                                  
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~----------------------------------   50 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN----------------------------------   50 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC----------------------------------
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc----------------------------------
Confidence            34567889999999999999  799999999999999998732100                                  


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCC----C----eEEEEeCCCcEEEeccCCCee-----eEeec-C-----CCCeE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNS----N----YLLSCSMDKTVRMWQVGCNQC-----LNVFD-H-----HNYVT  312 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~----~----~l~s~s~d~~v~iwd~~~~~~-----~~~~~-~-----~~~v~  312 (626)
                           ....+..+.+|...|.+++|+|+    +    +|++++.|+.|++||+.+++.     +..+. |     ...|.
T Consensus        51 -----~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  125 (397)
T 1sq9_A           51 -----PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW  125 (397)
T ss_dssp             -----GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE
T ss_pred             -----CCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE
Confidence                 01246777899999999999998    5    789999999999999998876     66664 5     48999


Q ss_pred             EEEEe----eCCCCE-EEEEeCCCcEEEEeCCC------CeEE------Ee-------ccCCCCeEEEEEeeCCCEEEEE
Q 006909          313 CVQFN----PIDDNY-FISGSIDGKVRIWGVCE------KRVV------DW-------ADVRDVISAICYIPDGKGFIVG  368 (626)
Q Consensus       313 ~~~~~----p~~~~~-l~s~s~dg~v~iwd~~~------~~~~------~~-------~~~~~~i~~i~~sp~g~~l~~g  368 (626)
                      +++|+    | ++++ |++++.||.|++||+..      ++.+      .+       ..+...|.+++|+|++ .++++
T Consensus       126 ~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~  203 (397)
T 1sq9_A          126 ALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG  203 (397)
T ss_dssp             EEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE
T ss_pred             EEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE
Confidence            99999    8 8999 99999999999999987      4432      33       3478899999999999 99999


Q ss_pred             ecCCcEEEEEcCCCceeeeEEeeccccccC---CCCeEEEEEcCCCCcEEEEEeCC---CcEEEEeCCcceeeeeecC--
Q 006909          369 SITGTCHFYKASGNDLKLEKVDFHDRKKTS---GNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLP--  440 (626)
Q Consensus       369 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~s~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~--  440 (626)
                      +.||.|++||+++...... +..   ...|   ...|++++|+|++ .+|++++.|   +.|++||+.+.........  
T Consensus       204 ~~dg~i~i~d~~~~~~~~~-~~~---~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~  278 (397)
T 1sq9_A          204 FNNGTVQISELSTLRPLYN-FES---QHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  278 (397)
T ss_dssp             CTTSEEEEEETTTTEEEEE-EEC---CC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             eCCCcEEEEECCCCceeEE-Eec---cccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcccceeccCc
Confidence            9999999999987654322 222   0113   4789999999997 799999999   9999999876554444444  


Q ss_pred             -----------CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCccc
Q 006909          441 -----------KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQ  509 (626)
Q Consensus       441 -----------~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l  509 (626)
                                 |...|.+++|+|++++|++++.|+.|++||+.++....           .+.       ..-...+.. 
T Consensus       279 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------~~~-------~~~~~~~~~-  339 (397)
T 1sq9_A          279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT-----------TLN-------MHCDDIEIE-  339 (397)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-----------EEE-------CCGGGCSSG-
T ss_pred             ccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE-----------EEe-------cccCcccch-
Confidence                       78899999999999999999999999999998641100           000       000000000 


Q ss_pred             ccccCCCccccCccccccCCCCcccCCCcccCCccccCCC----------CcccccCCCCCCCCCCCcccC
Q 006909          510 KSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG----------PCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       510 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg----------~~l~s~~~~d~~i~vwd~~~~  570 (626)
                          .+...         ........+...+.+++|+|+|          +++++++. |+.|++|++.++
T Consensus       340 ----~~~~~---------g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~g  396 (397)
T 1sq9_A          340 ----EDILA---------VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL-DRSIRWFREAGG  396 (397)
T ss_dssp             ----GGCCC---------BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET-TTEEEEEEEEC-
T ss_pred             ----hhhhc---------cccccccccCCceeEEEeccccccccccccccceEEEecC-CCcEEEEEcCCC
Confidence                00000         0001123356678899999998          68888888 799999999876

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-33  Score=284.73  Aligned_cols=254  Identities=24%  Similarity=0.371  Sum_probs=192.8

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      +|.+.|++++|+|++++||+|+.|++|+||++......                                      ....
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~--------------------------------------~~~~   97 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR--------------------------------------TFEM   97 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------------------------------------------CCC
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--------------------------------------cccc
Confidence            49999999999999999999999999999998642100                                      0012


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-C---eeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-N---QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-~---~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                      .++..+.+|...|.+++|+|++ +|++|+.|++|++||+.. +   +++..+ .|...|.+++|+| ++.+|++|+.|++
T Consensus        98 ~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~  176 (330)
T 2hes_X           98 DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDT  176 (330)
T ss_dssp             EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred             eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCe
Confidence            3456788999999999999988 899999999999999943 2   455555 4889999999999 9999999999999


Q ss_pred             EEEEeCCCC--e-EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceee-eEEee-ccccccCCCCeEEE
Q 006909          333 VRIWGVCEK--R-VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKL-EKVDF-HDRKKTSGNKITGI  405 (626)
Q Consensus       333 v~iwd~~~~--~-~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~-~~~~~~~~~~i~~l  405 (626)
                      |++||..++  + +..+.+|...|.+++|+|+  +..|++|+.|++|++||+....... ..... ......|...|.++
T Consensus       177 i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  256 (330)
T 2hes_X          177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV  256 (330)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEE
T ss_pred             EEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEE
Confidence            999998765  2 3456789999999999998  7789999999999999987542110 00011 11112256899999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCcce--eee-eecCCCC-CeEEEEEcC--CCCEEEEEeCCccEEEEECCC
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDVI--HKF-KGLPKSG-SQMSASFTT--TGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~--~~~-~~~~~~~-~v~~~~~sp--~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      +|++++  +|++++.||.|++||.....  ... ....|.. .|.+++|+|  ++++|++|+.||+|++|++++
T Consensus       257 ~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          257 AWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            999774  89999999999999976432  111 1234665 899999999  789999999999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2e-33  Score=291.32  Aligned_cols=281  Identities=11%  Similarity=0.173  Sum_probs=212.0

Q ss_pred             ccccccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      ...+.+.+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.++...                                
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------------------------  109 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT--------------------------------  109 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE--------------------------------
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc--------------------------------
Confidence            445566788999999999999999 89999999999999999863211                                


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCE
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~  323 (626)
                                 ......+|...|.+++|+| ++ +|++++.|+.|++||+.+........   +...|.+++|+| ++++
T Consensus       110 -----------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  177 (383)
T 3ei3_B          110 -----------SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQM  177 (383)
T ss_dssp             -----------EEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET-TTTE
T ss_pred             -----------eeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC-CCCE
Confidence                       1122347999999999999 44 89999999999999999644333333   447899999999 9999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          324 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      |++|+.|+.|++||++...+..+..|...|.+++|+|+++ ++++++.|+.|++||+++...........    .|...|
T Consensus       178 l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v  253 (383)
T 3ei3_B          178 LATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPV  253 (383)
T ss_dssp             EEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCE
T ss_pred             EEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCce
Confidence            9999999999999998777777888999999999999999 89999999999999998743221111111    135799


Q ss_pred             EEEEEcC-CCCcEEEEEeCCCcEEEEeCCcc--eeeeeecC-----CC----------CCeEEEEEcCCCCEEEEEeCCc
Q 006909          403 TGIQFSR-DESQRIMITSEDSKLRILDGVDV--IHKFKGLP-----KS----------GSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       403 ~~l~~s~-~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~-----~~----------~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      ++++|+| ++ .+|++++.|+.|++||+.+.  ...+..+.     +.          ..+..++|+|++++  +++.|+
T Consensus       254 ~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~  330 (383)
T 3ei3_B          254 NAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKR  330 (383)
T ss_dssp             EEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCC
T ss_pred             EEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCC
Confidence            9999999 87 79999999999999998743  23333321     12          33445666677766  777899


Q ss_pred             cEEEEECCCCCCCCCC--c-cCCccceeeeccCCcEEEEe
Q 006909          465 RVYVWNYDELCFPSSK--Q-KNSVRSCEHFFSEGVSVAVQ  501 (626)
Q Consensus       465 ~I~iwd~~~~~~~~~~--~-~~~~~~~~~~~~~g~~~av~  501 (626)
                      .|++||+.++......  + ......++.|+|++..++.+
T Consensus       331 ~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          331 TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             CEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred             eEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence            9999999876322111  1 12333444555555554444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.8e-34  Score=299.30  Aligned_cols=302  Identities=14%  Similarity=0.200  Sum_probs=217.6

Q ss_pred             ceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          261 LQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      .....+|...|++|+|+|. + +|++|+.||+|+|||+.++.....+   +|...|++++|+|.++++|++|+.||+|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            4556789999999999985 3 8999999999999999877544333   599999999999977899999999999999


Q ss_pred             EeCCCCeEEEecc---CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          336 WGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       336 wd~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      ||++++.......   +...+.+++|+|++++|++|+.||.|++||+++....        ....|...|++++|+|++.
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~--------~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW--------NLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC--------CSBCCSSCEEEEEECTTCS
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE--------EEecccceEEeeeecCCCc
Confidence            9998876554433   3456789999999999999999999999999764321        1334568999999999987


Q ss_pred             cEEEEEeCCCcEEEEeCCccee---eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC--ccCCccc
Q 006909          413 QRIMITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QKNSVRS  487 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~~~  487 (626)
                      .++++++.|+.|+|||++....   ......|...|.+++|+|+|++|++++.||.|+|||+.++..+...  +..... 
T Consensus       264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-  342 (435)
T 4e54_B          264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF-  342 (435)
T ss_dssp             SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC-
T ss_pred             eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc-
Confidence            7899999999999999874322   2222457889999999999999999999999999999876322111  000000 


Q ss_pred             eeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909          488 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV  567 (626)
Q Consensus       488 ~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~  567 (626)
                           .....+...|++++.                                ...+++++|+..++.....++.|++||.
T Consensus       343 -----~~~~~~~~~~~~~~~--------------------------------~~~~~~~~d~~~~~~~~~~~~~i~iwd~  385 (435)
T 4e54_B          343 -----QHLTPIKAAWHPRYN--------------------------------LIVVGRYPDPNFKSCTPYELRTIDVFDG  385 (435)
T ss_dssp             -----SSSCCCBCEECSSSS--------------------------------CEEEECCCCTTSCCSSTTCCCCEEEECS
T ss_pred             -----ccceeEEEEEcCCCC--------------------------------EEEEEEcCCCCeEEEEecCCCEEEEEEC
Confidence                 000000111122111                                2223455666655555554567999999


Q ss_pred             ccCCCCCCCChhhHHHHhhhccCCcccc---ccccccceEEEEecCCceEeeeeec
Q 006909          568 TIDSDGYCQDPQQQRLQQQCLNNVDDVR---AISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                      .++.          ....+..++...+.   ++++ +|.+||+|+ |++|+||+..
T Consensus       386 ~~g~----------~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          386 NSGK----------MMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             SSCC----------EEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC
T ss_pred             CCCc----------EEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECC
Confidence            8872          11122223333333   3555 899999887 8899999954

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.7e-32  Score=278.16  Aligned_cols=273  Identities=15%  Similarity=0.235  Sum_probs=223.4

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .+|.+.|++++|+|++++|++++ ||.|++|++.++..                                          
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~------------------------------------------   84 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN------------------------------------------   84 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC------------------------------------------
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc------------------------------------------
Confidence            37999999999999999999999 99999999986321                                          


Q ss_pred             CCCceeec--cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          258 ESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       258 ~~~~~~~~--~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                      ...+..+.  +|...|.+++|+|++ +|++++.|+.|++||+.+++  ....+ .|...|.+++|+| +++++++++.||
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg  163 (337)
T 1gxr_A           85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDG  163 (337)
T ss_dssp             CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCC
Confidence            12233333  789999999999987 89999999999999999877  33344 4888999999999 999999999999


Q ss_pred             cEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          332 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       332 ~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      .|++||+++++... +..|...+.+++|+|+++++++++.||.|++||+++...... ..       +...+.+++|+|+
T Consensus       164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~-------~~~~v~~~~~s~~  235 (337)
T 1gxr_A          164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HD-------FTSQIFSLGYCPT  235 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EE-------CSSCEEEEEECTT
T ss_pred             cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-ec-------CCCceEEEEECCC
Confidence            99999999887654 556889999999999999999999999999999988765332 21       2368999999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  490 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  490 (626)
                      + .++++++.++.|++||+..... .....|...+.+++|+|++++|++++.||.|++||+.++....           .
T Consensus       236 ~-~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-----------~  302 (337)
T 1gxr_A          236 G-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-----------Q  302 (337)
T ss_dssp             S-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----------E
T ss_pred             C-CEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-----------E
Confidence            7 7999999999999999875543 3445588999999999999999999999999999998763221           1


Q ss_pred             eccCCcEEEEecCCCCcccccccCC
Q 006909          491 FFSEGVSVAVQWPGIGTEQKSLCSS  515 (626)
Q Consensus       491 ~~~~g~~~av~~s~~~~~l~~~~~~  515 (626)
                      ..+.+.+.+++|+|++..++..+.+
T Consensus       303 ~~~~~~v~~~~~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          303 SKESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             EECSSCEEEEEECTTSCEEEEEETT
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCC
Confidence            2234556677777777766655443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=291.98  Aligned_cols=308  Identities=15%  Similarity=0.240  Sum_probs=230.9

Q ss_pred             ccccccccCcEEEEEEcCCCCEE-EEEeC---CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYL-ASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~L-atgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      .+.+++|.+.|++++|+|++..+ ++|+.   ||.|+|||+.++...                                 
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~---------------------------------   57 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK---------------------------------   57 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE---------------------------------
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc---------------------------------
Confidence            34557899999999999999654 56665   999999999874221                                 


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCC----CeEEEEeCCCcEEEeccCCCe-eeEee-cCCCCeEEEEE------e
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNS----NYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQF------N  317 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~----~~l~s~s~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~------~  317 (626)
                                 .....+|...|.+++|+|+    .+|++++.|+.|++||+.+++ .+..+ .|...|.+++|      +
T Consensus        58 -----------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s  126 (357)
T 3i2n_A           58 -----------LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIG  126 (357)
T ss_dssp             -----------EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC
T ss_pred             -----------ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccC
Confidence                       1223378999999999997    489999999999999999887 66666 48899999965      5


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCe--EEEeccCC----CCeEEEE----EeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909          318 PIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVR----DVISAIC----YIPDGKGFIVGSITGTCHFYKASGNDLKLE  387 (626)
Q Consensus       318 p~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~----~~i~~i~----~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~  387 (626)
                      | ++++|++++.||.|++||+.++.  ...+..+.    ..+.+++    |+|+++++++++.||.|++||+++......
T Consensus       127 ~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  205 (357)
T 3i2n_A          127 E-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE  205 (357)
T ss_dssp             --CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             C-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee
Confidence            6 89999999999999999998865  33343333    3788888    788999999999999999999998765321


Q ss_pred             EEeeccccccCCCCeEEEEEcC---CCCcEEEEEeCCCcEEEEeCCccee--ee---eecCCCCCeEEEEEcCCCC-EEE
Q 006909          388 KVDFHDRKKTSGNKITGIQFSR---DESQRIMITSEDSKLRILDGVDVIH--KF---KGLPKSGSQMSASFTTTGK-HII  458 (626)
Q Consensus       388 ~~~~~~~~~~~~~~i~~l~~s~---~~~~~l~~~s~dg~i~iwd~~~~~~--~~---~~~~~~~~v~~~~~sp~g~-~l~  458 (626)
                              ..+...|.+++|+|   ++ .++++++.||.|++||+.....  .+   ....|...|.+++|+|+++ +|+
T Consensus       206 --------~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  276 (357)
T 3i2n_A          206 --------TNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL  276 (357)
T ss_dssp             --------EECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             --------cCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence                    11247899999999   76 7999999999999999764322  22   1225889999999999998 899


Q ss_pred             EEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCc
Q 006909          459 SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSER  538 (626)
Q Consensus       459 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  538 (626)
                      +++.||.|++||+..+......           .++|.....           ...            .........+..
T Consensus       277 ~~~~dg~i~iwd~~~~~~~~~~-----------~~~g~~~~~-----------~~~------------~~~~~~~~~~~~  322 (357)
T 3i2n_A          277 TAGGAGGLHLWKYEYPIQRSKK-----------DSEGIEMGV-----------AGS------------VSLLQNVTLSTQ  322 (357)
T ss_dssp             EEETTSEEEEEEEECCSCC--C-----------CTTSCCCCC-----------CCE------------EEEEEEEECCSS
T ss_pred             EEeCCCcEEEeecCCCcccccc-----------cCCCCcccc-----------ccc------------cceeeccccCCC
Confidence            9999999999999875322111           111110000           000            001111344566


Q ss_pred             ccCCccccCCCCccc-ccCCCCCCCCCCCcccC
Q 006909          539 FSLGSWFSNDGPCRG-SATWPAEKLPLWDVTID  570 (626)
Q Consensus       539 ~~~~~~~s~dg~~l~-s~~~~d~~i~vwd~~~~  570 (626)
                      .+.+++|+|+|++++ +++. |+.|++||+.+.
T Consensus       323 ~v~~~~~s~~~~~l~~s~~~-d~~i~iw~~~~~  354 (357)
T 3i2n_A          323 PISSLDWSPDKRGLCVCSSF-DQTVRVLIVTKL  354 (357)
T ss_dssp             CEEEEEECSSSTTEEEEEET-TSEEEEEEECC-
T ss_pred             CeeEEEEcCCCCeEEEEecC-CCcEEEEECCCc
Confidence            789999999999998 6777 799999999865

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-32  Score=275.66  Aligned_cols=249  Identities=25%  Similarity=0.379  Sum_probs=208.7

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ..+.+.+|...|++++|+|++++|++|+.||.|++||+.+                                        
T Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~----------------------------------------   96 (312)
T 4ery_A           57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS----------------------------------------   96 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------------------
T ss_pred             cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC----------------------------------------
Confidence            3456779999999999999999999999999999999987                                        


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                           ...+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |..+|.+++|+| ++++|++++.|
T Consensus        97 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  170 (312)
T 4ery_A           97 -----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYD  170 (312)
T ss_dssp             -----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             -----CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCC
Confidence                 34467788999999999999987 89999999999999999999888875 888999999999 99999999999


Q ss_pred             CcEEEEeCCCCeEEEe--ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          331 GKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      |.|++||+++++....  ..+...+..++|+|++++|++++.||.|++||+.+...... +..+..    ........++
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~----~~~~~~~~~~  245 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN----EKYCIFANFS  245 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE-ECSSCC----SSSCCCEEEE
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-EEecCC----ceEEEEEEEE
Confidence            9999999998876543  34567899999999999999999999999999988765322 211110    1122233444


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe--CCccEEEEECC
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYD  472 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s--~dg~I~iwd~~  472 (626)
                      +.+..++++++.||.|++||+.+.........|...|.+++|+|++++|++++  .|++|++|+.+
T Consensus       246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            43347999999999999999886655555556889999999999999999997  69999999965

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-32  Score=291.54  Aligned_cols=322  Identities=16%  Similarity=0.274  Sum_probs=249.0

Q ss_pred             ccccccccccCcE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          172 YTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       172 ~~~~~l~~H~~~V-~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      ...+.+.+|.+.| ++  ++++|++|++|+.||+|++||+.+                                      
T Consensus       109 ~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~--------------------------------------  148 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVT--------------------------------------  148 (445)
T ss_dssp             CCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTT--------------------------------------
T ss_pred             ceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCC--------------------------------------
Confidence            3556789999875 55  455689999999999999999987                                      


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                             ...+..+.+|...|.+++|+ ++.+++|+.|++|++||+.+++++..+. |...|.+++|+   ++.+++|+.
T Consensus       149 -------~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~  217 (445)
T 2ovr_B          149 -------GKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSR  217 (445)
T ss_dssp             -------CCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEET
T ss_pred             -------CcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec---CCEEEEEeC
Confidence                   34467788999999999998 4599999999999999999999988885 88999999995   578999999


Q ss_pred             CCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          330 DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       330 dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      ||+|++||+.+++.. .+..|...|.++++  +++++++|+.||.|++||+.+...... +      ..|...|.++.| 
T Consensus       218 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-~------~~~~~~v~~~~~-  287 (445)
T 2ovr_B          218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT-L------QGHTNRVYSLQF-  287 (445)
T ss_dssp             TSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE-E------CCCSSCEEEEEE-
T ss_pred             CCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE-e------cCCCCceEEEEE-
Confidence            999999999987765 45678899999998  788999999999999999987754322 2      234578999999 


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccce
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC  488 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  488 (626)
                       ++ .++++++.|+.|++||+.+.........|...+.++.+  ++++|++++.||.|++||+.++..            
T Consensus       288 -~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~------------  351 (445)
T 2ovr_B          288 -DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQC------------  351 (445)
T ss_dssp             -CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE------------
T ss_pred             -CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcE------------
Confidence             44 68999999999999998866555555567888888776  477999999999999999976411            


Q ss_pred             eeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909          489 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  568 (626)
Q Consensus       489 ~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~  568 (626)
                               +..--.                             ...+...+.+++|  +++++++++. |+.|++||+.
T Consensus       352 ---------~~~~~~-----------------------------~~~~~~~v~~~~~--~~~~l~s~~~-dg~v~iwd~~  390 (445)
T 2ovr_B          352 ---------LQTLQG-----------------------------PNKHQSAVTCLQF--NKNFVITSSD-DGTVKLWDLK  390 (445)
T ss_dssp             ---------EEEECS-----------------------------TTSCSSCEEEEEE--CSSEEEEEET-TSEEEEEETT
T ss_pred             ---------EEEEcc-----------------------------CCCCCCCEEEEEE--CCCEEEEEeC-CCeEEEEECC
Confidence                     000000                             0012223444445  3567888877 7999999998


Q ss_pred             cCCCCCCCChhhHHHHhhh-----ccCCccc--cccccccceEEEEecCCce----EeeeeecCcc
Q 006909          569 IDSDGYCQDPQQQRLQQQC-----LNNVDDV--RAISATWGLVIVTAGCDGM----IKTFHNYGLP  623 (626)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~s~~dg~~ivt~g~Dg~----Irvw~~~g~p  623 (626)
                      ++.           .....     ..+.+.+  .++++ +|.++++|+.||+    |.+|+.-.-|
T Consensus       391 ~~~-----------~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~~  444 (445)
T 2ovr_B          391 TGE-----------FIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDVDM  444 (445)
T ss_dssp             TCC-----------EEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred             CCc-----------eeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCCCC
Confidence            872           11111     1233333  34555 8999999999998    9999986644

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.1e-34  Score=291.07  Aligned_cols=300  Identities=14%  Similarity=0.154  Sum_probs=228.9

Q ss_pred             ccccccCcEEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          176 EIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspd----g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      ...+|.+.|++++|+|+    ...+++++.++.|++||+.++....                                  
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~----------------------------------   58 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR----------------------------------   58 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE----------------------------------
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE----------------------------------
Confidence            34589999999999984    4466666667799999998632210                                  


Q ss_pred             ccccccCCCce--eeccCccceEEEEEcCC----C-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCE
Q 006909          252 EVFQIEESPLQ--ELHGHKGDVLDLAWSNS----N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       252 ~~~~~~~~~~~--~~~~h~~~V~~l~~s~~----~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~  323 (626)
                              .+.  ....|...|++++|+|+    + +|++|+.|+.|++||+.+++.+..+. |...|.+++|+|.++++
T Consensus        59 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  130 (366)
T 3k26_A           59 --------LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNL  130 (366)
T ss_dssp             --------EEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTE
T ss_pred             --------eeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCE
Confidence                    011  11236788999999987    4 79999999999999999999988886 99999999999977899


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEe----ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEe---------
Q 006909          324 FISGSIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD---------  390 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~~----~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~---------  390 (626)
                      |++|+.||.|++||+++++....    ..|...|.+++|+|++++|++++.||.|++||+.+.........         
T Consensus       131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (366)
T 3k26_A          131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT  210 (366)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred             EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCC
Confidence            99999999999999999887765    47899999999999999999999999999999987543211000         


Q ss_pred             ------------eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee--------------eeeecCCCCC
Q 006909          391 ------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--------------KFKGLPKSGS  444 (626)
Q Consensus       391 ------------~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~  444 (626)
                                  .......|...|.+++|+  + .++++++.|+.|++||+.+...              ......|...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (366)
T 3k26_A          211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD  287 (366)
T ss_dssp             SSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred             cccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence                        000112256899999999  3 5999999999999999764321              2233447788


Q ss_pred             eEEEEEcCC--CCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCc
Q 006909          445 QMSASFTTT--GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQ  522 (626)
Q Consensus       445 v~~~~~sp~--g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~  522 (626)
                      |.+++|+|+  +++|++++.||.|++||+.++.....                 ... .+.                   
T Consensus       288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------------~~~-~~~-------------------  330 (366)
T 3k26_A          288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA-----------------KCT-TLT-------------------  330 (366)
T ss_dssp             SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC-----------------EEE-EEC-------------------
T ss_pred             EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc-----------------cce-EEc-------------------
Confidence            999999999  99999999999999999987521100                 000 000                   


Q ss_pred             cccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909          523 KWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  568 (626)
Q Consensus       523 ~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~  568 (626)
                                ...+...+..++|+|+|+++++++. |+.|++||+.
T Consensus       331 ----------~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~  365 (366)
T 3k26_A          331 ----------HHKCGAAIRQTSFSRDSSILIAVCD-DASIWRWDRL  365 (366)
T ss_dssp             ----------CTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEEC-
T ss_pred             ----------ccccCCceEEEEeCCCCCeEEEEeC-CCEEEEEEec
Confidence                      0011345677788888888888887 7899999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-33  Score=290.01  Aligned_cols=249  Identities=11%  Similarity=0.203  Sum_probs=209.2

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .|.+.|++++|+|++++||+|+.||.|++|++.+...                                         ..
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-----------------------------------------~~  103 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-----------------------------------------AI  103 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-----------------------------------------CC
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-----------------------------------------cc
Confidence            5899999999999999999999999999999976210                                         01


Q ss_pred             CCceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCe------eeEee----cCCCCeEEEEEeeCC-CCEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ------CLNVF----DHHNYVTCVQFNPID-DNYFI  325 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~------~~~~~----~~~~~v~~~~~~p~~-~~~l~  325 (626)
                      ..+..+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++      ....+    .|...|.+++|+| + +.+|+
T Consensus       104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~  182 (416)
T 2pm9_A          104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ-SLAHVFA  182 (416)
T ss_dssp             CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS-SCTTEEE
T ss_pred             cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCC-CCCcEEE
Confidence            346677899999999999997 5 89999999999999998876      33322    4888999999999 6 89999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEecc-C------CCCeEEEEEeeCC-CEEEEEecCC---cEEEEEcCCCceeeeEEeeccc
Q 006909          326 SGSIDGKVRIWGVCEKRVVDWAD-V------RDVISAICYIPDG-KGFIVGSITG---TCHFYKASGNDLKLEKVDFHDR  394 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~~~~~~-~------~~~i~~i~~sp~g-~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~  394 (626)
                      +++.|+.|++||+++++...... +      ...|.+++|+|++ .++++++.++   .|++||+++.......+.    
T Consensus       183 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~----  258 (416)
T 2pm9_A          183 SAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN----  258 (416)
T ss_dssp             EESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC----
T ss_pred             EEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee----
Confidence            99999999999999987665433 3      6889999999997 6899999998   999999987643332221    


Q ss_pred             cccCCCCeEEEEEcC-CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECC
Q 006909          395 KKTSGNKITGIQFSR-DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       395 ~~~~~~~i~~l~~s~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~  472 (626)
                       ..|...|++++|+| ++ .+|++++.|+.|++||+.+.........|...|.+++|+|++ .+|++++.|+.|++|++.
T Consensus       259 -~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          259 -QGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             -SCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             -cCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence             13458999999999 65 799999999999999988665555555588899999999999 899999999999999998


Q ss_pred             CCC
Q 006909          473 ELC  475 (626)
Q Consensus       473 ~~~  475 (626)
                      +..
T Consensus       337 ~~~  339 (416)
T 2pm9_A          337 NLT  339 (416)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.1e-32  Score=281.76  Aligned_cols=251  Identities=17%  Similarity=0.271  Sum_probs=207.0

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      +..|.++|++++|+|+|++||+|+.||.|++||+.++.                                          
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------------------------------------------   41 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------------------------------------------   41 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------------------------------------------
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------------------------------------------
Confidence            45699999999999999999999999999999998631                                          


Q ss_pred             cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                       ...+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++....+   .|...|.+++|+| ++++|++++.|+.
T Consensus        42 -~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~  119 (372)
T 1k8k_C           42 -WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRV  119 (372)
T ss_dssp             -EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSS
T ss_pred             -EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCE
Confidence             01467788999999999999987 8999999999999999988755443   5888999999999 9999999999999


Q ss_pred             EEEEeCCCCe----EEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee-----------eEEeeccccc
Q 006909          333 VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----------EKVDFHDRKK  396 (626)
Q Consensus       333 v~iwd~~~~~----~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~-----------~~~~~~~~~~  396 (626)
                      |++||+..+.    ... ...|...|.+++|+|++++|++++.||.|++||+.......           ..........
T Consensus       120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
T 1k8k_C          120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS  199 (372)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred             EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence            9999998765    222 35678999999999999999999999999999975221000           0000000122


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      .|...|++++|+|++ .+|++++.|+.|++||+.+.........|...+.+++|+|++++|+++ .|+.|++|++.+
T Consensus       200 ~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          200 SSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             CCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            445789999999997 799999999999999987555444444578899999999999988888 899999999987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.5e-33  Score=293.95  Aligned_cols=258  Identities=16%  Similarity=0.270  Sum_probs=198.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .|.+.|++++|+|+|++||+|+.||.|+||++.++.......                                  ..+.
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~----------------------------------~~~~   71 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS----------------------------------RGEY   71 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC----------------------------------CCCE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc----------------------------------ccce
Confidence            478999999999999999999999999999998743110000                                  0001


Q ss_pred             CCceeeccCc------------cceEEEEEcCCC---eEEEEeCCCcEEEeccCCCeee---------------------
Q 006909          259 SPLQELHGHK------------GDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCL---------------------  302 (626)
Q Consensus       259 ~~~~~~~~h~------------~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~~---------------------  302 (626)
                      .....+.+|.            ..|++++|+|++   .|++++.|++|++||+.++...                     
T Consensus        72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  151 (447)
T 3dw8_B           72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT  151 (447)
T ss_dssp             EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred             eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence            2356777888            889999999974   8999999999999999765442                     


Q ss_pred             ------------------Ee--ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEE--------eccCCCCe
Q 006909          303 ------------------NV--FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD--------WADVRDVI  353 (626)
Q Consensus       303 ------------------~~--~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~--------~~~~~~~i  353 (626)
                                        ..  ..|...|.+++|+| ++++|++| .|+.|++||++. ++...        ...|...|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  229 (447)
T 3dw8_B          152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVI  229 (447)
T ss_dssp             CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCE
T ss_pred             eEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcce
Confidence                              12  24889999999999 99999998 799999999984 44443        45788999


Q ss_pred             EEEEEeeCC-CEEEEEecCCcEEEEEcCCCceee---eEEeeccc------cccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909          354 SAICYIPDG-KGFIVGSITGTCHFYKASGNDLKL---EKVDFHDR------KKTSGNKITGIQFSRDESQRIMITSEDSK  423 (626)
Q Consensus       354 ~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~---~~~~~~~~------~~~~~~~i~~l~~s~~~~~~l~~~s~dg~  423 (626)
                      .+++|+|++ ++|++|+.||.|++||+++.....   ..+..+..      ...+...|++++|+|++ .+|++++. +.
T Consensus       230 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~  307 (447)
T 3dw8_B          230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LS  307 (447)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SE
T ss_pred             EEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-Ce
Confidence            999999998 999999999999999998876421   12211110      00112389999999997 78999988 99


Q ss_pred             EEEEeCCc---ceeeeeecCCCC-------------CeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          424 LRILDGVD---VIHKFKGLPKSG-------------SQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       424 i~iwd~~~---~~~~~~~~~~~~-------------~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |++||+..   ....+..+....             .+..++|+|++++|++|+.||.|++||+.++
T Consensus       308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence            99999864   334444421110             1334999999999999999999999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=297.03  Aligned_cols=329  Identities=13%  Similarity=0.132  Sum_probs=232.1

Q ss_pred             cccccc-ccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          172 YTSQEI-QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       172 ~~~~~l-~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      .+.+.+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+.....                                
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~--------------------------------  100 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE--------------------------------  100 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--------------------------------
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--------------------------------
Confidence            445566 89999999999999 99999999999999999987511000                                


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC---CCeeeEeec-------------CCCCeE
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---CNQCLNVFD-------------HHNYVT  312 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~---~~~~~~~~~-------------~~~~v~  312 (626)
                             .......+ +|...|++++|+|++ +|++++.|++|++||+.   +++....+.             +...+.
T Consensus       101 -------~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  172 (437)
T 3gre_A          101 -------VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV  172 (437)
T ss_dssp             -------CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred             -------ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence                   01112222 599999999999987 89999999999999995   454443321             556777


Q ss_pred             EEE--EeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-ecc--CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909          313 CVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  387 (626)
Q Consensus       313 ~~~--~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~--~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~  387 (626)
                      ++.  ++| ++.+|++|+.|+.|++||+++++.+. +..  |...|++++|+|++++|++|+.||.|++||++...... 
T Consensus       173 ~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-  250 (437)
T 3gre_A          173 RMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR-  250 (437)
T ss_dssp             EEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE-
T ss_pred             EEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE-
Confidence            777  456 78999999999999999999887665 334  78999999999999999999999999999999865432 


Q ss_pred             EEeeccccccCCCCeEEEEEcC----CCCcEEEEEeCCCcEEEEeCCcce--eeeeec----------------------
Q 006909          388 KVDFHDRKKTSGNKITGIQFSR----DESQRIMITSEDSKLRILDGVDVI--HKFKGL----------------------  439 (626)
Q Consensus       388 ~~~~~~~~~~~~~~i~~l~~s~----~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~----------------------  439 (626)
                      .+..     .+...|++++|+|    ++ .+|++++.|+.|++||+.+..  ..+..+                      
T Consensus       251 ~~~~-----~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (437)
T 3gre_A          251 SWSF-----GDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC  324 (437)
T ss_dssp             EEBC-----TTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred             EEec-----CCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence            2221     2236899997765    44 699999999999999987433  333321                      


Q ss_pred             --CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCc
Q 006909          440 --PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL  517 (626)
Q Consensus       440 --~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~  517 (626)
                        .|...|.+++|+ ++++|++|+.|+.|++||+.++..........       ..........+++....+...... .
T Consensus       325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~  395 (437)
T 3gre_A          325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS-------RFSDVFIPTQVTANLTMLLRKMKR-T  395 (437)
T ss_dssp             CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC---------CCCEEEEEEEETTEEEEEEECC---
T ss_pred             ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc-------ccCceEEEEEeecceEEEEEeccc-c
Confidence              155668999999 78999999999999999999863221110000       011122233333333332221000 0


Q ss_pred             cccCccccccCCCCcccCCCcccCCccccCC--CCcccccCCCCCCCCCCC
Q 006909          518 RDCSQKWDNLETAPWIRDSERFSLGSWFSND--GPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       518 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~s~~~~d~~i~vwd  566 (626)
                            +.  ........|...|.+++|+++  +.++++++. +|.|++|+
T Consensus       396 ------~~--~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~-dG~I~iw~  437 (437)
T 3gre_A          396 ------ST--HSVDDSLYHHDIINSISTCEVDETPLLVACDN-SGLIGIFQ  437 (437)
T ss_dssp             -------------------CCCEEEEEEEESSSSEEEEEEET-TSCEEEEC
T ss_pred             ------cc--cccCcccccccceeeEeeeccCCceEEEEEcC-CceEEEeC
Confidence                  00  011223447778999999998  778999988 79999995

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.3e-32  Score=276.74  Aligned_cols=255  Identities=18%  Similarity=0.275  Sum_probs=210.2

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      +.+.+.+|++.|++++|+|++++||+|+.||.|+|||+.++...                                    
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------------------------------------   46 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN------------------------------------   46 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC------------------------------------
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc------------------------------------
Confidence            34567899999999999999999999999999999999863210                                    


Q ss_pred             cccccCCCceeeccCccceEEEEEcC--CC-eEEEEeCCCcEEEeccCCC---------eeeEee-cCCCCeEEEEEeeC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN---------QCLNVF-DHHNYVTCVQFNPI  319 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~--~~-~l~s~s~d~~v~iwd~~~~---------~~~~~~-~~~~~v~~~~~~p~  319 (626)
                           ......+.+|...|++++|+|  ++ +|++++.|++|++||+.++         +.+..+ .|...|.+++|+| 
T Consensus        47 -----~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  120 (351)
T 3f3f_A           47 -----WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-  120 (351)
T ss_dssp             -----EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-
T ss_pred             -----ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-
Confidence                 123567789999999999998  35 9999999999999999876         445555 4889999999999 


Q ss_pred             C--CCEEEEEeCCCcEEEEeCCCCeEEE--------------eccCCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcC
Q 006909          320 D--DNYFISGSIDGKVRIWGVCEKRVVD--------------WADVRDVISAICYIPD---GKGFIVGSITGTCHFYKAS  380 (626)
Q Consensus       320 ~--~~~l~s~s~dg~v~iwd~~~~~~~~--------------~~~~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~  380 (626)
                      +  +++|++++.||.|++||+++++...              ...+...+.+++|+|+   +..+++++.++.+.+|+..
T Consensus       121 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~  200 (351)
T 3f3f_A          121 AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK  200 (351)
T ss_dssp             GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT
T ss_pred             CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC
Confidence            7  9999999999999999998765322              1256788999999997   9999999999999888877


Q ss_pred             CCceeeeEEeeccccccCCCCeEEEEEcCCCC---cEEEEEeCCCcEEEEeCCcc-------------------------
Q 006909          381 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES---QRIMITSEDSKLRILDGVDV-------------------------  432 (626)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~---~~l~~~s~dg~i~iwd~~~~-------------------------  432 (626)
                      ....... ..    ...|...|++++|+|++.   .+|++++.||.|++||+...                         
T Consensus       201 ~~~~~~~-~~----~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
T 3f3f_A          201 DGKLHVA-AK----LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMD  275 (351)
T ss_dssp             TSCEEEE-EE----CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------
T ss_pred             CCceeee-ee----cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccc
Confidence            6654221 11    233568999999999963   68999999999999997642                         


Q ss_pred             ---------------------eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          433 ---------------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       433 ---------------------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                                           ........|...|.+++|+|++++|++++.||.|++|++.++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          276 AQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             ---------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                                 222333458889999999999999999999999999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-32  Score=280.07  Aligned_cols=306  Identities=15%  Similarity=0.178  Sum_probs=230.1

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                      ...+.+|...|++++|+|++ +|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.||.|++||+
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEET
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Confidence            45688999999999999987 89999999999999999999998885 899999999999 9999999999999999999


Q ss_pred             CCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeecc----ccccCCC--CeEEEEE
Q 006909          339 CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHD----RKKTSGN--KITGIQF  407 (626)
Q Consensus       339 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~----~~~~~~~--~i~~l~~  407 (626)
                      .+++......+...+.+++|+|+++++++++.+     |.|++||+..............    ....+..  .+.+++|
T Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            999888877799999999999999999999999     9999999987654222111110    0111223  8999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcc
Q 006909          408 SRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR  486 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  486 (626)
                      +|++ .++++++.||.|++||+.. .........|...|.+++|+|++++|++++.|+.|++||+.++.....       
T Consensus       184 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-------  255 (369)
T 3zwl_B          184 STKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK-------  255 (369)
T ss_dssp             CGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-------
T ss_pred             cCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee-------
Confidence            9997 7999999999999999876 444444455888999999999999999999999999999987532211       


Q ss_pred             ceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909          487 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       487 ~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                          +........++|+|++..++....+....   .|.                          ...... ...+++||
T Consensus       256 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~--------------------------~~~~~~-~~~i~~~d  301 (369)
T 3zwl_B          256 ----YETDCPLNTAVITPLKEFIILGGGQEAKD---VTT--------------------------TSANEG-KFEARFYH  301 (369)
T ss_dssp             ----EECSSCEEEEEECSSSSEEEEEECCC-------------------------------------------CEEEEEE
T ss_pred             ----ecCCCCceeEEecCCCceEEEeecCCCce---EEE--------------------------EecCCC-cceeEEEe
Confidence                12334455566666666555433321100   000                          000000 23578888


Q ss_pred             cccCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeecC
Q 006909          567 VTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYG  621 (626)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~g  621 (626)
                      ..++           ........|...+  .++++ +|.+||||+.||+|++|+...
T Consensus       302 ~~~~-----------~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          302 KIFE-----------EEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             TTTC-----------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECH
T ss_pred             cCCC-----------cchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECcc
Confidence            8876           2222233344444  34555 899999999999999999753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=294.84  Aligned_cols=307  Identities=11%  Similarity=0.059  Sum_probs=230.1

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .-...|.+++|||||+++||++.|++|+  |...                                              
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~----------------------------------------------   44 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKY----------------------------------------------   44 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECC----------------------------------------------
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccc----------------------------------------------
Confidence            4457899999999999999999999999  6433                                              


Q ss_pred             CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                        ...+.+|...|.+++|+|+|      .++++.+|+.... .+..+.|...|.+++|+| +|..|++++.||.|++||.
T Consensus        45 --~~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~-~~~~~~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~  114 (588)
T 2j04_A           45 --AKDINCNSKNLFHVKEFPLE------FENKLDFELAQQN-GLLNSQPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKD  114 (588)
T ss_dssp             --CSCCSSBGGGTEEEEEECCC------CCCTTTTSCCCSS-CSSTTSCSCCEEEEEECS-SSSCEEEEETTSCEEEEET
T ss_pred             --cceecCCCccEEEEEECCCC------CcceEEEEeCCCc-eEeecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeC
Confidence              12336899999999999998      4555555554322 233445788999999999 9999999999999999996


Q ss_pred             CCCeEEEeccCCC-----CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee----eEEeeccccccCCCCeEEEEEcC
Q 006909          339 CEKRVVDWADVRD-----VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL----EKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       339 ~~~~~~~~~~~~~-----~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      .+  +.....|..     .+.+++|+|+|++|++|+.||+|++||+.++....    ....+..+..+|...|.+++|+|
T Consensus       115 ~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP  192 (588)
T 2j04_A          115 NK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE  192 (588)
T ss_dssp             TE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred             Cc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence            54  333333544     49999999999999999999999999999875300    11122222344678999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCccee-----eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC-CCCCccC
Q 006909          410 DESQRIMITSEDSKLRILDGVDVIH-----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF-PSSKQKN  483 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~  483 (626)
                      +|   +++++.|++|++||+.....     .+. ..|...|.+++|+  |++||+++ +++|++||+.++.. .......
T Consensus       193 dg---Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~  265 (588)
T 2j04_A          193 DV---LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSL  265 (588)
T ss_dssp             TE---EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCC
T ss_pred             Cc---EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCC
Confidence            95   88999999999999864332     232 2477899999999  68999997 69999999998744 3331233


Q ss_pred             Cccceeee--ccCCcEEEEec--------------CCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccC
Q 006909          484 SVRSCEHF--FSEGVSVAVQW--------------PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSN  547 (626)
Q Consensus       484 ~~~~~~~~--~~~g~~~av~~--------------s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~  547 (626)
                      .....+.|  +|++..+++++              +|++..++..     ++.+.+|...........+...+.+++|||
T Consensus       266 ~~V~~va~~~s~d~~~La~a~edG~klw~~d~~~~spd~~l~a~~-----d~~v~lW~~~g~~l~~~~~~~~I~~va~SP  340 (588)
T 2j04_A          266 ENFHIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYL-----EKKFKKWSTIWNEFNNYETTLVIHGISLSP  340 (588)
T ss_dssp             SCCCEEEETTCSSCEEEEECSSCEEEEEESSSEEEECCCSSHHHH-----HHHHHHTTTTTTSSSSSCCEEEEEEEEECT
T ss_pred             ceEEEEEeeeCCCCCEEEEEcCCCCEEEeeccEEECCCceEEEEc-----CCEEEEEECCCCceeeeccceEEEEEEECC
Confidence            34455688  99999999988              5666555543     456777876333322233344589999999


Q ss_pred             CCCcccccCC
Q 006909          548 DGPCRGSATW  557 (626)
Q Consensus       548 dg~~l~s~~~  557 (626)
                      ||+.+|+++.
T Consensus       341 dG~~lA~~~~  350 (588)
T 2j04_A          341 DGYSIAIVYD  350 (588)
T ss_dssp             TSSEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999998775

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-33  Score=294.95  Aligned_cols=281  Identities=10%  Similarity=0.073  Sum_probs=210.9

Q ss_pred             ccccCCCceee-ccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCC---Ce---eeEeecCCCCeEEEEEeeCCCCEE
Q 006909          254 FQIEESPLQEL-HGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGC---NQ---CLNVFDHHNYVTCVQFNPIDDNYF  324 (626)
Q Consensus       254 ~~~~~~~~~~~-~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~---~~---~~~~~~~~~~v~~~~~~p~~~~~l  324 (626)
                      |...+..+..+ .+|.+.|++++|+| ++ +|++|+.|++|++||+.+   +.   ....+.|...|.+++|+| ++++|
T Consensus        48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l  126 (437)
T 3gre_A           48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAF  126 (437)
T ss_dssp             GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEE
T ss_pred             ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEE
Confidence            34446677888 89999999999999 77 999999999999999976   33   345557999999999999 99999


Q ss_pred             EEEeCCCcEEEEeCC---CCeEEEe-----------cc--CCCCeEEEE--EeeCCCEEEEEecCCcEEEEEcCCCceee
Q 006909          325 ISGSIDGKVRIWGVC---EKRVVDW-----------AD--VRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDLKL  386 (626)
Q Consensus       325 ~s~s~dg~v~iwd~~---~~~~~~~-----------~~--~~~~i~~i~--~sp~g~~l~~g~~dg~i~i~d~~~~~~~~  386 (626)
                      ++|+.||+|++||+.   .++....           ..  +...+.++.  ++|++.+|++|+.||.|++||+++.....
T Consensus       127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence            999999999999994   3333221           12  556677777  55789999999999999999998876543


Q ss_pred             eEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEc----CCCCEEEEEe
Q 006909          387 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFT----TTGKHIISIG  461 (626)
Q Consensus       387 ~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s----p~g~~l~s~s  461 (626)
                      . +..+    .|...|++++|+|++ .+|++++.||.|++||++........ ..+...|.+++|+    |++.+|++++
T Consensus       207 ~-~~~~----~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~  280 (437)
T 3gre_A          207 I-IENS----PRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS  280 (437)
T ss_dssp             E-EECC----GGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred             E-EccC----CCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence            2 2221    134799999999997 79999999999999998865544433 2467789999665    5688999999


Q ss_pred             CCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccC
Q 006909          462 DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSL  541 (626)
Q Consensus       462 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  541 (626)
                      .||.|++||+.++......          ..+.+....+.|+|++..+....             +.    -..+...+.
T Consensus       281 ~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~-------------~~----~~~~~~~v~  333 (437)
T 3gre_A          281 SKTFLTIWNFVKGHCQYAF----------INSDEQPSMEHFLPIEKGLEELN-------------FC----GIRSLNALS  333 (437)
T ss_dssp             TTEEEEEEETTTTEEEEEE----------ESSSSCCCGGGGSCBCSSGGGCC-------------CC----CCCSGGGGC
T ss_pred             CCCcEEEEEcCCCcEEEEE----------EcCCCCCccceecccccccccce-------------ec----ccccCCceE
Confidence            9999999999875211100          01122233345556555442111             00    122566799


Q ss_pred             CccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          542 GSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       542 ~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      .++|+ +++++++++. |+.|++||+.++
T Consensus       334 ~l~~~-~~~~l~s~~~-d~~i~~wd~~~~  360 (437)
T 3gre_A          334 TISVS-NDKILLTDEA-TSSIVMFSLNEL  360 (437)
T ss_dssp             CEEEE-TTEEEEEEGG-GTEEEEEETTCG
T ss_pred             EEEEC-CceEEEecCC-CCeEEEEECCCc
Confidence            99999 8888999988 799999999877

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-33  Score=311.89  Aligned_cols=254  Identities=20%  Similarity=0.298  Sum_probs=209.8

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .+.+.+|.+.|++++|+|+|++|++|+.||+|+|||+.+..                                       
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------------------------------   42 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------------------------   42 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------------------------------
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------------------------------
Confidence            45678999999999999999999999999999999987421                                       


Q ss_pred             ccccCCCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCC--CCEEE
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFI  325 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~--~~~l~  325 (626)
                          ...+..+.+|.+.|++++|+|+  + +|++|+.||+|++||+.+++  .+..+ .|...|++++|+| +  +++++
T Consensus        43 ----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~  117 (753)
T 3jro_A           43 ----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLL  117 (753)
T ss_dssp             ----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEE
T ss_pred             ----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEE
Confidence                2346678899999999999876  5 89999999999999999886  44444 4889999999999 7  99999


Q ss_pred             EEeCCCcEEEEeCCCC---eEEEeccCCCCeEEEEEee-------------CCCEEEEEecCCcEEEEEcCCCceeeeEE
Q 006909          326 SGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEKV  389 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~---~~~~~~~~~~~i~~i~~sp-------------~g~~l~~g~~dg~i~i~d~~~~~~~~~~~  389 (626)
                      +|+.||.|++||++++   .......|...|.+++|+|             ++..+++|+.||.|++||+++........
T Consensus       118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~  197 (753)
T 3jro_A          118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (753)
T ss_dssp             EEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             EEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence            9999999999999876   3445678899999999999             58999999999999999998775432211


Q ss_pred             eeccccccCCCCeEEEEEcCCC--CcEEEEEeCCCcEEEEeCCcce-----eeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 006909          390 DFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       390 ~~~~~~~~~~~~i~~l~~s~~~--~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~s~s~  462 (626)
                      .   ....|...|++++|+|++  +.++++++.||.|++||.....     .......+...|.+++|+|+|++|++++.
T Consensus       198 ~---~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  274 (753)
T 3jro_A          198 S---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (753)
T ss_dssp             E---EECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred             e---eecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence            1   123456899999999993  3899999999999999977532     22333457889999999999999999999


Q ss_pred             CccEEEEECCCC
Q 006909          463 DCRVYVWNYDEL  474 (626)
Q Consensus       463 dg~I~iwd~~~~  474 (626)
                      ||.|++|++...
T Consensus       275 Dg~I~vwd~~~~  286 (753)
T 3jro_A          275 DNKVTLWKENLE  286 (753)
T ss_dssp             SSCEECCBCCSS
T ss_pred             CCEEEEEecCCC
Confidence            999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.5e-32  Score=281.94  Aligned_cols=294  Identities=13%  Similarity=0.138  Sum_probs=233.4

Q ss_pred             CCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                      .....+.+|...|++++|+|++  +|++|+.|+.|++||+.+++....+.   |...|.+++|+|.++++|++++.|+.|
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            3456788999999999999986  89999999999999999888777663   899999999999557899999999999


Q ss_pred             EEEeCCCCeEEEeccC---CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          334 RIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       334 ~iwd~~~~~~~~~~~~---~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      ++||+.+.....+..+   ...|.+++|+|++++|++|+.||.|++||++...  ...+.      .|...|.+++|+|+
T Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~------~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE--IFKEK------LHKAKVTHAEFNPR  215 (383)
T ss_dssp             EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE--EEEEE------CSSSCEEEEEECSS
T ss_pred             EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE--EEEec------cCCCcEEEEEECCC
Confidence            9999998766655444   4789999999999999999999999999995332  22222      34589999999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCCCCCCCC--c--
Q 006909          411 ESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSK--Q--  481 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~--~--  481 (626)
                      +..++++++.|+.|++||+.+    .... ....|...|.+++|+| ++++|++++.|+.|++||+.++......  +  
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYI-AEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEE-EEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceE-EEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence            854999999999999999875    2222 2224889999999999 9999999999999999999876332111  1  


Q ss_pred             ----cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCC--cccC--CCcccCCccccCCCCccc
Q 006909          482 ----KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--WIRD--SERFSLGSWFSNDGPCRG  553 (626)
Q Consensus       482 ----~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~--~~~~~~~~~~s~dg~~l~  553 (626)
                          ...... ..|+|++..++++++|++..     ..+.++.+.+|+......  .+..  +...+..++|+|||++++
T Consensus       295 ~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~-----s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~  368 (383)
T 3ei3_B          295 RQFQHLTPIK-ATWHPMYDLIVAGRYPDDQL-----LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLA  368 (383)
T ss_dssp             CCCTTSCCCC-CEECSSSSEEEEECBCCTTT-----CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEE
T ss_pred             cccccccceE-EeccCCCCceEEEecCCccc-----ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEE
Confidence                111222 37899999999999999987     333556788888755433  2222  344566669999999999


Q ss_pred             ccCCCCCCCCCCCccc
Q 006909          554 SATWPAEKLPLWDVTI  569 (626)
Q Consensus       554 s~~~~d~~i~vwd~~~  569 (626)
                      +++  |+.|++||+.+
T Consensus       369 s~s--d~~i~iw~~~~  382 (383)
T 3ei3_B          369 SGM--GFNILIWNRED  382 (383)
T ss_dssp             EEE--TTEEEEEECC-
T ss_pred             Eec--CCcEEEEecCC
Confidence            985  79999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.8e-32  Score=275.45  Aligned_cols=293  Identities=18%  Similarity=0.288  Sum_probs=215.8

Q ss_pred             ceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCe-----eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          261 LQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ-----CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~-----~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                      ..+|.||.+.|++|+|+|+ + +|+||+.|++|+|||+.+.+     +...+ .|...|.+++|+| ++++|++++.|+.
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~  109 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGT  109 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEccccc
Confidence            4578999999999999997 4 89999999999999997653     34444 4899999999999 9999999999999


Q ss_pred             EEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          333 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       333 v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      |++|+........ ...+...+..+.++++++.|++++.|+.+++||+........      ....|...+..++|++++
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~------~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV------QDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE------CSSSCSSCEEEEEECSCS
T ss_pred             ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE------EeccccCcccceEEccCC
Confidence            9999998876554 556677888999999999999999999999999876544322      123445889999999875


Q ss_pred             C-cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909          412 S-QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  490 (626)
Q Consensus       412 ~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  490 (626)
                      . .++++++.|+.|++||..+.........|...|.+++|+|++++|++|+.|+.|++||+.+....           ..
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-----------~~  252 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-----------YT  252 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-----------EE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-----------ee
Confidence            3 46788999999999999876666666668999999999999999999999999999999864110           01


Q ss_pred             eccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      +.....                                           +..++|+|++.+++++ . ++.|++||+..+
T Consensus       253 ~~~~~~-------------------------------------------v~~~~~~~~~~~~~~~-~-d~~i~iwd~~~~  287 (340)
T 4aow_A          253 LDGGDI-------------------------------------------INALCFSPNRYWLCAA-T-GPSIKIWDLEGK  287 (340)
T ss_dssp             EECSSC-------------------------------------------EEEEEECSSSSEEEEE-E-TTEEEEEETTTT
T ss_pred             ecCCce-------------------------------------------EEeeecCCCCceeecc-C-CCEEEEEECCCC
Confidence            111111                                           3334455555444333 3 567777877654


Q ss_pred             CCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeee
Q 006909          571 SDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                      ..  ...............+...+  .++++ ||++|||||.||+|+||++
T Consensus       288 ~~--~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          288 II--VDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             EE--EEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred             eE--EEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeC
Confidence            10  00000000111122233333  34556 8999999999999999995

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.4e-32  Score=276.61  Aligned_cols=203  Identities=10%  Similarity=0.034  Sum_probs=166.3

Q ss_pred             cCccceEEEEEcCCC-eEE--EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe
Q 006909          266 GHKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  342 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~--s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~  342 (626)
                      .+...+.+++|+||| +++  +++.|++|+|||+.+++++..+.|...|.+++|+| +++++++++.++ +++|+..++.
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEecccee-EEEEEeccCc
Confidence            455678999999998 554  45579999999999999999999999999999999 999999998654 5666665555


Q ss_pred             EEE---eccCCCCeEEEEEeeCCCEEEEEecCC----cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          343 VVD---WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       343 ~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      ...   ...|...|.+++|+|+++.+++++.++    .+++|++...........   ....|...|++++|+|+| ++|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~V~~~~~Spdg-~~l  284 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK---QVTNRFKGITSMDVDMKG-ELA  284 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE---EEESSCSCEEEEEECTTS-CEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee---eecCCCCCeEeEEECCCC-Cce
Confidence            432   345778899999999999999999887    688899877654332111   122345789999999998 799


Q ss_pred             EEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          416 MITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++|+.|++|+|||+.+....... ..|...|++++|+|||++|++||.|++|+||++...
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999876555443 458999999999999999999999999999999765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=275.27  Aligned_cols=293  Identities=17%  Similarity=0.273  Sum_probs=226.4

Q ss_pred             ccccccccccccCcEEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  246 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspd---g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (626)
                      .....+.+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+..                                
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--------------------------------   75 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--------------------------------   75 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--------------------------------
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--------------------------------
Confidence            34456678899999999999999   6999999999999999998621                                


Q ss_pred             eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEE--eeCCCCE
Q 006909          247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF--NPIDDNY  323 (626)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~--~p~~~~~  323 (626)
                                 ......+.+|...|++++|+|++ +|++++.|+.|++||+.+++.+....|...|.+++|  +| ++++
T Consensus        76 -----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~  143 (368)
T 3mmy_A           76 -----------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSC  143 (368)
T ss_dssp             -----------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEE
T ss_pred             -----------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCE
Confidence                       11236677899999999999987 899999999999999999999988889999999999  77 8889


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          324 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      |++++.||.|++||+++++..........+.++.+.  +..+++++.++.+++|++............     .....+.
T Consensus       144 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~  216 (368)
T 3mmy_A          144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIES-----PLKHQHR  216 (368)
T ss_dssp             EEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCC-----SCSSCEE
T ss_pred             EEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccc-----cccCCCc
Confidence            999999999999999988877666666666666655  458999999999999999876654432221     1224566


Q ss_pred             EEEEcCCCC---cEEEEEeCCCcEEEEeCCcc-----eeeeeecCCCC------------CeEEEEEcCCCCEEEEEeCC
Q 006909          404 GIQFSRDES---QRIMITSEDSKLRILDGVDV-----IHKFKGLPKSG------------SQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       404 ~l~~s~~~~---~~l~~~s~dg~i~iwd~~~~-----~~~~~~~~~~~------------~v~~~~~sp~g~~l~s~s~d  463 (626)
                      ++.+.++..   ..+++++.|+.|++||....     ...+..  |..            .|.+++|+|++++|++++.|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  294 (368)
T 3mmy_A          217 CVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD  294 (368)
T ss_dssp             EEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETT
T ss_pred             eEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccC
Confidence            666665431   23999999999999998743     233333  333            79999999999999999999


Q ss_pred             ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCcccc
Q 006909          464 CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWD  525 (626)
Q Consensus       464 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~  525 (626)
                      |.|++||+.++......          ..+.+.+.+++|+|++..++..+.+........|+
T Consensus       295 g~i~iwd~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          295 GRFSFWDKDARTKLKTS----------EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             SCEEEEETTTTEEEEEC----------CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             CeEEEEECCCCcEEEEe----------cCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence            99999999876221110          11245567778888888777766655444344443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-31  Score=266.53  Aligned_cols=284  Identities=15%  Similarity=0.192  Sum_probs=222.8

Q ss_pred             ccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909          168 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  247 (626)
Q Consensus       168 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (626)
                      +....+.+++.+|.+.|++++| |++++|++|+.||.|++||+.+                                   
T Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-----------------------------------   48 (313)
T 3odt_A            5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD-----------------------------------   48 (313)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS-----------------------------------
T ss_pred             cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-----------------------------------
Confidence            3455677889999999999999 9999999999999999999976                                   


Q ss_pred             ecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC---eeeEee-cCCCCeEEEEEeeCCCC
Q 006909          248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVF-DHHNYVTCVQFNPIDDN  322 (626)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~---~~~~~~-~~~~~v~~~~~~p~~~~  322 (626)
                                ......+..|...|.+++|+|++ +|++++.|+.|++|++...   +.+..+ .|...|.+++|   +++
T Consensus        49 ----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~  115 (313)
T 3odt_A           49 ----------QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF---QDG  115 (313)
T ss_dssp             ----------SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE---ETT
T ss_pred             ----------CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe---cCC
Confidence                      23356677899999999999987 8999999999999998654   444444 48899999999   467


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          323 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       323 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      ++++++.||.|++|| ..........|...+.+++|+| +++.+++++.||.|++||...  . .....     ..+...
T Consensus       116 ~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~-~~~~~-----~~~~~~  186 (313)
T 3odt_A          116 VVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--V-IKTFS-----GIHNDV  186 (313)
T ss_dssp             EEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--E-EEEEC-----SSCSSC
T ss_pred             EEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--e-EEEEe-----ccCccc
Confidence            999999999999999 4445556778999999999999 999999999999999999332  1 11121     124578


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  481 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~  481 (626)
                      +.+++|+|++ . +++++.|+.|++||+.+.........|...|.+++|+|++ .|++++.||.|++||+.++.....  
T Consensus       187 i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~--  261 (313)
T 3odt_A          187 VRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV--  261 (313)
T ss_dssp             EEEEEEEETT-E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEE--
T ss_pred             EEEEEEcCCC-e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEE--
Confidence            9999999997 4 9999999999999988655555555588999999999999 588999999999999987622111  


Q ss_pred             cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccc
Q 006909          482 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  526 (626)
Q Consensus       482 ~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~  526 (626)
                              ...+.+.+.+++|+|++..+. .+   .++.+.+|+.
T Consensus       262 --------~~~~~~~i~~~~~~~~~~~~~-~~---~dg~i~iw~~  294 (313)
T 3odt_A          262 --------ITLPAISIWSVDCMSNGDIIV-GS---SDNLVRIFSQ  294 (313)
T ss_dssp             --------EECSSSCEEEEEECTTSCEEE-EE---TTSCEEEEES
T ss_pred             --------EeccCceEEEEEEccCCCEEE-Ee---CCCcEEEEeC
Confidence                    112234566677777766333 22   2334556665

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7e-32  Score=283.10  Aligned_cols=286  Identities=14%  Similarity=0.138  Sum_probs=220.3

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .+.+..| ..+....|+|++++||+|+.||.|++||+.+                                         
T Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------------------------------------  128 (420)
T 3vl1_A           91 SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-----------------------------------------  128 (420)
T ss_dssp             TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-----------------------------------------
T ss_pred             eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-----------------------------------------
Confidence            3445556 4555667899999999999999999999876                                         


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                          ......+.+|...|++++|+|++ +|++++.|++|++||+.+++.+..+. |...|.+++|+| ++++|++++.|+
T Consensus       129 ----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~  203 (420)
T 3vl1_A          129 ----NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDG  203 (420)
T ss_dssp             ----CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTS
T ss_pred             ----cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCC
Confidence                23355667899999999999987 89999999999999999998888875 899999999999 999999999999


Q ss_pred             cEEEEeCCCCeEEEecc----CCCCeE---------------------EEEEeeCCCEEEEEecCCcEEEEEcCCCceee
Q 006909          332 KVRIWGVCEKRVVDWAD----VRDVIS---------------------AICYIPDGKGFIVGSITGTCHFYKASGNDLKL  386 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~~----~~~~i~---------------------~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~  386 (626)
                      +|++||+++++......    +...+.                     +++|+|++++|++|+.||.|++||+++.....
T Consensus       204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  283 (420)
T 3vl1_A          204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI  283 (420)
T ss_dssp             CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE
Confidence            99999999887665432    334444                     44557889999999999999999998876543


Q ss_pred             eEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          387 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       387 ~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                      ...      ..+...|++++|+|++..+|++++.||.|++||+.+.   ...+..+ +...+.++.+ +++++|++++.|
T Consensus       284 ~~~------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d  355 (420)
T 3vl1_A          284 QLP------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYF-AAGALFVSSGFD  355 (420)
T ss_dssp             EEC------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-ETTEEEEEETTT
T ss_pred             Ecc------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-CCCCEEEEecCC
Confidence            321      2345789999999998549999999999999998754   3444443 5667887755 578899999999


Q ss_pred             ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCc---ccccccCC
Q 006909          464 CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT---EQKSLCSS  515 (626)
Q Consensus       464 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~---~l~~~~~~  515 (626)
                      +.|++|++.....+........ ........+.+..++|+|++.   .++....+
T Consensus       356 ~~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~  409 (420)
T 3vl1_A          356 TSIKLDIISDPESERPAIEFET-PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN  409 (420)
T ss_dssp             EEEEEEEECCTTCCSCEECTTS-CEEECCSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred             ccEEEEeccCCCCCccceeccC-ccEEccCCcceEEEEEccCCCCcceEEEEcCC
Confidence            9999999987533222111111 111223455666778888877   45554443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.2e-31  Score=276.17  Aligned_cols=206  Identities=17%  Similarity=0.230  Sum_probs=174.1

Q ss_pred             eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909          264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  339 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~  339 (626)
                      +..|..+|++++|+|++ +|++++.|+.|++||+.+++  .+..+ .|...|.+++|+| ++++|++++.||.|++||+.
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECC
Confidence            44589999999999998 88999999999999999887  66666 4899999999999 99999999999999999998


Q ss_pred             CCeEE---EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          340 EKRVV---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       340 ~~~~~---~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      +++..   ....+...|.+++|+|++++|++++.||.|++||+............   ...|...|++++|+|++ .+|+
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~-~~l~  158 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI---KKPIRSTVLSLDWHPNS-VLLA  158 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE---CTTCCSCEEEEEECTTS-SEEE
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee---ecccCCCeeEEEEcCCC-CEEE
Confidence            87733   34678899999999999999999999999999999877632211111   22345899999999997 7999


Q ss_pred             EEeCCCcEEEEeCC------------------cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          417 ITSEDSKLRILDGV------------------DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       417 ~~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +++.|+.|++||+.                  ..........|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus       159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            99999999999953                  22233333457889999999999999999999999999999865

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-31  Score=272.81  Aligned_cols=247  Identities=15%  Similarity=0.141  Sum_probs=205.7

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      ...+|.+.|++++|+|++++|++|+.||.|+||++.++..                                        
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~----------------------------------------   45 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----------------------------------------   45 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------------------------------------
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----------------------------------------
Confidence            3458999999999999999999999999999999986321                                        


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEecc-CCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQV-GCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~-~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                        ..+...+.+|...|.+++|+|++  +|++++.|+.|++||+ .+++......  |...|.+++|+|  +++|++++.|
T Consensus        46 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d  121 (342)
T 1yfq_A           46 --NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG--DDKLIAASWD  121 (342)
T ss_dssp             --EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET--TTEEEEEETT
T ss_pred             --cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC--CCEEEEEcCC
Confidence              01234555899999999999875  5999999999999999 8887765557  999999999998  8899999999


Q ss_pred             CcEEEEeCCC---------CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC-CceeeeEEeeccccccCCC
Q 006909          331 GKVRIWGVCE---------KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       331 g~v~iwd~~~---------~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~  400 (626)
                      +.|++||+++         ++......+...|.+++|+|++  +++++.++.|++||+++ .........     ..+..
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~  194 (342)
T 1yfq_A          122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE-----SGLKY  194 (342)
T ss_dssp             SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE-----CSCSS
T ss_pred             CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeee-----cCCCC
Confidence            9999999987         6666666688999999999987  99999999999999987 543322221     12347


Q ss_pred             CeEEEEEcC-CCCcEEEEEeCCCcEEEEeCCcc--------eeeeeecC-------CCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          401 KITGIQFSR-DESQRIMITSEDSKLRILDGVDV--------IHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       401 ~i~~l~~s~-~~~~~l~~~s~dg~i~iwd~~~~--------~~~~~~~~-------~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      .+.+++|+| ++ .++++++.||.|++|+....        ...+..+.       |...|.+++|+|++++|++++.||
T Consensus       195 ~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  273 (342)
T 1yfq_A          195 QIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             CEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             ceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence            899999999 87 79999999999999997533        33444421       234999999999999999999999


Q ss_pred             cEEEEECCCC
Q 006909          465 RVYVWNYDEL  474 (626)
Q Consensus       465 ~I~iwd~~~~  474 (626)
                      .|++||+.++
T Consensus       274 ~i~vwd~~~~  283 (342)
T 1yfq_A          274 IISCWNLQTR  283 (342)
T ss_dssp             CEEEEETTTT
T ss_pred             eEEEEcCccH
Confidence            9999999876

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-31  Score=278.27  Aligned_cols=289  Identities=15%  Similarity=0.242  Sum_probs=226.7

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .+|.+.|++++|+|++++|++|+.||.|++||..                                              
T Consensus       105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~----------------------------------------------  138 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT----------------------------------------------  138 (425)
T ss_dssp             ---CBCEEEEEECTTSSEEEEEETTSCEEEEETT----------------------------------------------
T ss_pred             cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC----------------------------------------------
Confidence            3579999999999999999999999999999933                                              


Q ss_pred             CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCC---------------eEEEEEeeCC
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY---------------VTCVQFNPID  320 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~---------------v~~~~~~p~~  320 (626)
                      ...+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. +...               +.+++|+| +
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  217 (425)
T 1r5m_A          139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D  217 (425)
T ss_dssp             SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-T
T ss_pred             CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C
Confidence            34466778899999999999987 89999999999999999999888875 3334               89999998 5


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909          321 DNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  399 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  399 (626)
                       ..+++++.+|.|++||+.+++.. .+..|...|.+++|+|++++|++++.||.|++||+.+...... +      ..+.
T Consensus       218 -~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~------~~~~  289 (425)
T 1r5m_A          218 -DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC-F------YGHS  289 (425)
T ss_dssp             -TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE-E------CCCS
T ss_pred             -CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE-e------cCCC
Confidence             56899999999999999987654 4567889999999999999999999999999999987654322 1      2245


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  479 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~  479 (626)
                      ..|.+++|+|++  ++++++.|+.|++||+.+.........|...+.+++|+|++++|++++.||.|++||+.+...+..
T Consensus       290 ~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~  367 (425)
T 1r5m_A          290 QSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR  367 (425)
T ss_dssp             SCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred             ccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence            789999999996  899999999999999886655555555788999999999999999999999999999986531110


Q ss_pred             Cc---cC--------CccceeeeccCC-cEEEEecCCCCcccccccCCCccccCccccc
Q 006909          480 KQ---KN--------SVRSCEHFFSEG-VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  526 (626)
Q Consensus       480 ~~---~~--------~~~~~~~~~~~g-~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~  526 (626)
                      ..   ..        ........+..+ .+..++|+|++..++....+   +.+.+|+.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~  423 (425)
T 1r5m_A          368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL---QEGSVVAI  423 (425)
T ss_dssp             -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS---SCCEEEEC
T ss_pred             eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC---ceEEEEee
Confidence            00   00        011111112223 77888899988887765554   33555543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-31  Score=278.60  Aligned_cols=283  Identities=16%  Similarity=0.209  Sum_probs=224.4

Q ss_pred             ccccCc--EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          178 QAHKGC--IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       178 ~~H~~~--V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      .+|...  +.+++|++  ..+++++.||.|++|++.++..                                        
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~----------------------------------------  125 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSV----------------------------------------  125 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCE----------------------------------------
T ss_pred             CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcE----------------------------------------
Confidence            466665  44566654  5688888999999999987432                                        


Q ss_pred             ccCCCceeec-cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          256 IEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       256 ~~~~~~~~~~-~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                           ...+. .|...|.+++|+|++ +|++|+.||.|++||+.+++.+..+ .|...|.+++|+   +++|++|+.||.
T Consensus       126 -----~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~  197 (401)
T 4aez_A          126 -----SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGA  197 (401)
T ss_dssp             -----EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTSE
T ss_pred             -----eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCCC
Confidence                 22333 388999999999987 8999999999999999999988888 488999999994   579999999999


Q ss_pred             EEEEeCCC-C-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          333 VRIWGVCE-K-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       333 v~iwd~~~-~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      |++||++. + ....+..|...|.+++|+|++++|++|+.||.|++||+.+...... +      ..|...|.+++|+|+
T Consensus       198 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~------~~~~~~v~~~~~~p~  270 (401)
T 4aez_A          198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-K------TNHNAAVKAVAWCPW  270 (401)
T ss_dssp             EEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-E------CCCSSCCCEEEECTT
T ss_pred             EEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-e------cCCcceEEEEEECCC
Confidence            99999983 3 3455778999999999999999999999999999999987654322 1      224578999999998


Q ss_pred             CCcEEEEEe--CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE--eCCccEEEEECCCCCCCCCCccCCcc
Q 006909          411 ESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI--GDDCRVYVWNYDELCFPSSKQKNSVR  486 (626)
Q Consensus       411 ~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~--s~dg~I~iwd~~~~~~~~~~~~~~~~  486 (626)
                      +..++++++  .|+.|++||+.+....... .+...+.+++|+|++++|+++  +.||.|++|++.++.           
T Consensus       271 ~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-----------  338 (401)
T 4aez_A          271 QSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-----------  338 (401)
T ss_dssp             STTEEEEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-----------
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-----------
Confidence            877888876  7999999998755443333 256789999999999999995  489999999987631           


Q ss_pred             ceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909          487 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       487 ~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                                ...+.                              ....+...+..++|+|||+++++++. |+.|++|+
T Consensus       339 ----------~~~~~------------------------------~~~~h~~~v~~~~~s~dg~~l~s~~~-dg~i~iw~  377 (401)
T 4aez_A          339 ----------LTKQV------------------------------DIPAHDTRVLYSALSPDGRILSTAAS-DENLKFWR  377 (401)
T ss_dssp             ----------EEEEE------------------------------EEECCSSCCCEEEECTTSSEEEEECT-TSEEEEEE
T ss_pred             ----------ceeEE------------------------------EecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEE
Confidence                      00000                              01123345778889999999999988 79999999


Q ss_pred             cccC
Q 006909          567 VTID  570 (626)
Q Consensus       567 ~~~~  570 (626)
                      +.++
T Consensus       378 ~~~~  381 (401)
T 4aez_A          378 VYDG  381 (401)
T ss_dssp             CCC-
T ss_pred             CCCC
Confidence            9887

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.4e-31  Score=294.88  Aligned_cols=244  Identities=22%  Similarity=0.384  Sum_probs=200.6

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .+.+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++                                        
T Consensus       423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~----------------------------------------  462 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG----------------------------------------  462 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----------------------------------------
T ss_pred             cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----------------------------------------
Confidence            4568899999999999999999999999999999999873                                        


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee----cCCCCeEEEEEeeCCC--CEEEE
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDD--NYFIS  326 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~~p~~~--~~l~s  326 (626)
                           .....+.+|...|.+++|+|++ +|++|+.|++|++||+.........    .|...|.+++|+| ++  ..+++
T Consensus       463 -----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s  536 (694)
T 3dm0_A          463 -----VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVS  536 (694)
T ss_dssp             -----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEE
T ss_pred             -----cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEE
Confidence                 3456788999999999999987 8999999999999998765444332    3788999999999 65  68999


Q ss_pred             EeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          327 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      |+.|++|++||++++++.. +..|...|++++|+|+|++|++|+.||.|++||+.+.+....   +.     +...|.++
T Consensus       537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~---~~-----~~~~v~~~  608 (694)
T 3dm0_A          537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS---LE-----ANSVIHAL  608 (694)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC---CB-----CSSCEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE---ec-----CCCcEEEE
Confidence            9999999999999877654 667999999999999999999999999999999988765322   11     13679999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeec-------------------CCCCCeEEEEEcCCCCEEEEEeCCccE
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL-------------------PKSGSQMSASFTTTGKHIISIGDDCRV  466 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------------------~~~~~v~~~~~sp~g~~l~s~s~dg~I  466 (626)
                      +|+|++ .++++ +.++.|+|||+.+........                   .+...+++++|+|+|++|++|+.||+|
T Consensus       609 ~~sp~~-~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i  686 (694)
T 3dm0_A          609 CFSPNR-YWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI  686 (694)
T ss_dssp             EECSSS-SEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEcCCC-cEEEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence            999996 45544 556779999987543222111                   111247889999999999999999999


Q ss_pred             EEEECCC
Q 006909          467 YVWNYDE  473 (626)
Q Consensus       467 ~iwd~~~  473 (626)
                      +||++..
T Consensus       687 ~iW~i~~  693 (694)
T 3dm0_A          687 RVWGIGR  693 (694)
T ss_dssp             EEEEC--
T ss_pred             EEEeccC
Confidence            9999863

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-31  Score=274.35  Aligned_cols=246  Identities=19%  Similarity=0.341  Sum_probs=204.9

Q ss_pred             cccCcEEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          179 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       179 ~H~~~V~~l~fspd----g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      .|.+.|++++|+|+    |++|++|+.||.|++||+.+                                          
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------------------------------------------  104 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------------------------------------------  104 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT------------------------------------------
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh------------------------------------------
Confidence            37789999999999    67999999999999999987                                          


Q ss_pred             cccCCCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEee----cCCCCeEEEEEeeCCCCEEEEEe
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                         ...+..+.+|...|.+++|+| ++ +|++++.|+.|++||+.+++.+..+    .|...|.+++|+| ++++|++++
T Consensus       105 ---~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  180 (366)
T 3k26_A          105 ---MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCG  180 (366)
T ss_dssp             ---CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ---ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEec
Confidence               344677889999999999999 66 8999999999999999999998887    4889999999999 999999999


Q ss_pred             CCCcEEEEeCCCCeEEE-----------------------------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEc
Q 006909          329 IDGKVRIWGVCEKRVVD-----------------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  379 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~-----------------------------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~  379 (626)
                      .||.|++||+++++...                             ...|...|.+++|+  ++++++++.||.|++||+
T Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP  258 (366)
T ss_dssp             TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred             CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence            99999999998765432                             12288899999998  779999999999999999


Q ss_pred             CCCceeeeEE-------eeccccccCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEeCCcc------eeeeeecCCCCC
Q 006909          380 SGNDLKLEKV-------DFHDRKKTSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGS  444 (626)
Q Consensus       380 ~~~~~~~~~~-------~~~~~~~~~~~~i~~l~~s~~--~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~  444 (626)
                      .+........       ........|...|++++|+|+  + .+|++++.||.|++||+...      ...+..+.+...
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  337 (366)
T 3k26_A          259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA  337 (366)
T ss_dssp             SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSC
T ss_pred             CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCc
Confidence            8765411100       011112334578999999999  7 79999999999999998743      224444444799


Q ss_pred             eEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          445 QMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       445 v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      |.+++|+|++++|++++.||.|++||+.+
T Consensus       338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          338 IRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             eEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            99999999999999999999999999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-32  Score=278.48  Aligned_cols=243  Identities=15%  Similarity=0.171  Sum_probs=182.2

Q ss_pred             eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC--eeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~--~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                      .+..|.++|++++|+|++ +|++++.|+.|++||+.++  +.+..+ .|...|.+++|+| ++++|++++.|++|++||+
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC--
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEc
Confidence            344567899999999988 8999999999999999988  666666 4899999999999 9999999999999999999


Q ss_pred             CCCe----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          339 CEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       339 ~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      .++.    ......|...|.+++|+|++++|++++.|+.|++||+...........+.   ..|...|++++|+|++ .+
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~-~~  160 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK---RPLRSTILSLDWHPNN-VL  160 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC---SSCCSCEEEEEECTTS-SE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee---cccCCCeEEEEEcCCC-CE
Confidence            9876    56677899999999999999999999999999999998765311111111   1145899999999997 79


Q ss_pred             EEEEeCCCcEEEEeCCc------------------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909          415 IMITSEDSKLRILDGVD------------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      |++++.|+.|++||+..                  ....... .|...|.+++|+|++++|++++.|+.|++||+.++..
T Consensus       161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            99999999999999741                  1111222 6888999999999999999999999999999998743


Q ss_pred             C-----CCCccCCccceeeeccCCcEEEEecCCCCcccccc
Q 006909          477 P-----SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL  512 (626)
Q Consensus       477 ~-----~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~  512 (626)
                      +     ..........++.|+|++..++.+ +.++..++..
T Consensus       240 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~~~~~  279 (377)
T 3dwl_C          240 PPRALITVKLSQLPLRSLLWANESAIVAAG-YNYSPILLQG  279 (377)
T ss_dssp             CEEECCCEECSSSCEEEEEEEETTEEEEEE-SSSSEEEECC
T ss_pred             cceeeEeecCCCCceEEEEEcCCCCEEEEE-cCCcEEEEEe
Confidence            1     111222334556677777766555 4444444443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2e-30  Score=272.31  Aligned_cols=282  Identities=18%  Similarity=0.253  Sum_probs=225.4

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      .++.|+||++ ++||+|. |++|+|||+.+++..                                           .+.
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------------------------~~~  141 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------------------------QLL  141 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------------------------EEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------------------------EEE
Confidence            4678999976 5888776 899999999885321                                           123


Q ss_pred             eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909          263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  340 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~  340 (626)
                      .+.+|...|++|+|+|+| +|++|+.|++|+|||+.+++++..+. |...+.++.+   ++.++++|+.|+.+++||...
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~---~~~~l~sgs~d~~i~~~d~~~  218 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRV  218 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTS
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee---CCCEEEEEeCCCceeEeeecc
Confidence            445788899999999998 99999999999999999999998885 8889999887   468999999999999999876


Q ss_pred             Ce--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909          341 KR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  418 (626)
Q Consensus       341 ~~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~  418 (626)
                      ..  ...+..|...+..+.++|+++++++++.|+.+++|+............   ....+...|.+++|+|.+..+++++
T Consensus       219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~---~~~~~~~~V~~~~~~p~~~~~la~~  295 (420)
T 4gga_A          219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVKAVAWCPWQSNVLATG  295 (420)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE---EECCCSSCEEEEEECTTCTTEEEEE
T ss_pred             cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee---eecccCCceeeeeeCCCcccEEEEE
Confidence            43  445778999999999999999999999999999999987654322111   1223457899999999887777764


Q ss_pred             --eCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe--CCccEEEEECCCCCCCCCCccCCccceeeeccC
Q 006909          419 --SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE  494 (626)
Q Consensus       419 --s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  494 (626)
                        +.|++|++||+.+........ +...+.++.|+|+++.+++++  .|+.|+|||+.++.                   
T Consensus       296 ~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~-------------------  355 (420)
T 4gga_A          296 GGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-------------------  355 (420)
T ss_dssp             ECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-------------------
T ss_pred             eecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc-------------------
Confidence              579999999988765544443 456789999999999998875  78999999987641                   


Q ss_pred             CcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          495 GVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       495 g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                        .+..                                +.+|...|++++|+|||++|++++. |++|++||+...
T Consensus       356 --~v~~--------------------------------l~gH~~~V~~l~~spdg~~l~S~s~-D~tvriWdv~~~  396 (420)
T 4gga_A          356 --KVAE--------------------------------LKGHTSRVLSLTMSPDGATVASAAA-DETLRLWRCFEL  396 (420)
T ss_dssp             --EEEE--------------------------------ECCCSSCEEEEEECTTSSCEEEEET-TTEEEEECCSCS
T ss_pred             --EEEE--------------------------------EcCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEECCCC
Confidence              1110                                1234456778889999999999988 899999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.3e-31  Score=269.59  Aligned_cols=249  Identities=14%  Similarity=0.193  Sum_probs=206.6

Q ss_pred             cccCcEEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          179 AHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       179 ~H~~~V~~l~fspd---g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      +|.+.|++++|+|+   |++|++|+.||.|++||+.++                                          
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------------------------------------  100 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAP------------------------------------------  100 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSC------------------------------------------
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCC------------------------------------------
Confidence            79999999999999   699999999999999999872                                          


Q ss_pred             ccCCCceeeccCccceEEEEE------cCCC-eEEEEeCCCcEEEeccCCCe-eeEeec-C----CCCeEEEE----Eee
Q 006909          256 IEESPLQELHGHKGDVLDLAW------SNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD-H----HNYVTCVQ----FNP  318 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~------s~~~-~l~s~s~d~~v~iwd~~~~~-~~~~~~-~----~~~v~~~~----~~p  318 (626)
                        ..++..+.+|...|.+++|      +|++ +|++++.|+.|++||+.++. .+..+. +    ...+.+++    |+|
T Consensus       101 --~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (357)
T 3i2n_A          101 --EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ  178 (357)
T ss_dssp             --SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred             --CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence              1256778899999999965      5666 89999999999999999886 566663 2    33899998    677


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee---CCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc
Q 006909          319 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  395 (626)
Q Consensus       319 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp---~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  395 (626)
                       ++++|++++.||.|++||+++++......+...|.+++|+|   ++.++++++.||.|++||+++...... +... ..
T Consensus       179 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~-~~  255 (357)
T 3i2n_A          179 -EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG-FASV-SE  255 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE-EEEE-EE
T ss_pred             -CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc-eeee-cc
Confidence             99999999999999999999999888888999999999999   999999999999999999986543322 1110 12


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-------------------eeeeeecCCCCCeEEEEEcCCCCE
Q 006909          396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-------------------IHKFKGLPKSGSQMSASFTTTGKH  456 (626)
Q Consensus       396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~sp~g~~  456 (626)
                      ..|...|++++|+|++..++++++.||.|++||+...                   ........|...|.+++|+|++++
T Consensus       256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  335 (357)
T 3i2n_A          256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG  335 (357)
T ss_dssp             ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred             CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence            2456899999999998448999999999999997531                   122333458889999999999999


Q ss_pred             EE-EEeCCccEEEEECCCC
Q 006909          457 II-SIGDDCRVYVWNYDEL  474 (626)
Q Consensus       457 l~-s~s~dg~I~iwd~~~~  474 (626)
                      |+ +++.|+.|++||+.+.
T Consensus       336 l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          336 LCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEEETTSEEEEEEECC-
T ss_pred             EEEEecCCCcEEEEECCCc
Confidence            98 8999999999999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-31  Score=282.77  Aligned_cols=305  Identities=7%  Similarity=-0.019  Sum_probs=206.6

Q ss_pred             eEEEEeCCCcEEEeccCCCeee----Eee-cCCCCeEEEEEeeC-----CCCEEEEEeCCCcEEEEeCCCCeE-------
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCL----NVF-DHHNYVTCVQFNPI-----DDNYFISGSIDGKVRIWGVCEKRV-------  343 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~----~~~-~~~~~v~~~~~~p~-----~~~~l~s~s~dg~v~iwd~~~~~~-------  343 (626)
                      .|++++.|++|+|||+.++++.    ..+ .|...|.+++|+|.     ++.+|++++.||+|++||+..+..       
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            4666788999999999877642    233 36789999999992     257999999999999999976531       


Q ss_pred             -----EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE--EEcCCCCcEEE
Q 006909          344 -----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI--QFSRDESQRIM  416 (626)
Q Consensus       344 -----~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~s~~~~~~l~  416 (626)
                           ..+..|...|++++|+|++ .|++|+.||+|++||+++...+...+.      .|...|+++  .|+|++..+|+
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~------~H~~~V~sv~~~~s~~g~~~la  327 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQ------VHDSYILSVSTAYSDFEDTVVS  327 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEE------CSSSCEEEEEEECCTTSCCEEE
T ss_pred             ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEee------cccccEEEEEEEcCCCCCeEEE
Confidence                 2456788999999999865 899999999999999987643332222      345889999  56777546899


Q ss_pred             EEeCCCcEEEEeCCcce--eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccC
Q 006909          417 ITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE  494 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  494 (626)
                      +++.|++|+|||+++..  ..+.++.....|.+++|+|+++.+++++.|++|++||+.++....        .  ...+.
T Consensus       328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~--------~--l~gH~  397 (524)
T 2j04_B          328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH--------P--LVSRE  397 (524)
T ss_dssp             EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE--------E--EEECS
T ss_pred             EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce--------e--eecCC
Confidence            99999999999987533  344443333458899999999999999999999999998752211        0  11244


Q ss_pred             CcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCC--------CcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909          495 GVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDS--------ERFSLGSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       495 g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                      +.+.+++|+|++..+++.+.+   +.+++|+....  ....+        ...+..++|+|+|..+..  +  ....+|+
T Consensus       398 ~~V~sva~Sp~g~~l~Sgs~D---gtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~--~~~~~~~  468 (524)
T 2j04_B          398 TTITAIGVSRLHPMVLAGSAD---GSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--D--SSYEVYP  468 (524)
T ss_dssp             SCEEEEECCSSCCBCEEEETT---TEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE--C--CCCCCCC
T ss_pred             CceEEEEeCCCCCeEEEEECC---CEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc--c--CCceecc
Confidence            567788888888877765444   45677776432  11211        114568999999995532  2  1234454


Q ss_pred             cc-cCCCCCCCChhhHHHHhhhccCCcc--ccccccc--cceEEEEecCCceEeeeeecCc
Q 006909          567 VT-IDSDGYCQDPQQQRLQQQCLNNVDD--VRAISAT--WGLVIVTAGCDGMIKTFHNYGL  622 (626)
Q Consensus       567 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~--dg~~ivt~g~Dg~Irvw~~~g~  622 (626)
                      .. ++           ........|...  .+++++.  .|..||+|+.||+||||+.-|.
T Consensus       469 ~~~~g-----------~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          469 LTVND-----------VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             ------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             cccCC-----------cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            33 22           112222333333  3466663  2569999999999999998764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.98  E-value=8.3e-31  Score=272.62  Aligned_cols=258  Identities=14%  Similarity=0.182  Sum_probs=208.1

Q ss_pred             cccccccccCcEEEEEEcCC----C---CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCc
Q 006909          173 TSQEIQAHKGCIWTLKFSPD----G---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  245 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspd----g---~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (626)
                      ....+.+|...|++++|+|+    |   ++|++|+.||.|++|++.++....                            
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~----------------------------  105 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK----------------------------  105 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC----------------------------
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc----------------------------
Confidence            45567799999999999999    9   999999999999999998632100                            


Q ss_pred             eeecCCccccccCCCceeeccC-----ccceEEEEEc----CCC-e-EEEEeCCCcEEEeccCC------CeeeE-----
Q 006909          246 PVVIPDEVFQIEESPLQELHGH-----KGDVLDLAWS----NSN-Y-LLSCSMDKTVRMWQVGC------NQCLN-----  303 (626)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~s----~~~-~-l~s~s~d~~v~iwd~~~------~~~~~-----  303 (626)
                                  ...+..+.+|     ...|.+++|+    |++ + |++++.|+.|++||+.+      ++.+.     
T Consensus       106 ------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  173 (397)
T 1sq9_A          106 ------------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL  173 (397)
T ss_dssp             ------------CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred             ------------cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence                        0115566677     5999999999    887 7 99999999999999988      66554     


Q ss_pred             ee--------cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-ecc---C---CCCeEEEEEeeCCCEEEEE
Q 006909          304 VF--------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD---V---RDVISAICYIPDGKGFIVG  368 (626)
Q Consensus       304 ~~--------~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~---~---~~~i~~i~~sp~g~~l~~g  368 (626)
                      .+        .|...|.+++|+| ++ +|++++.||.|++||+++++... +..   |   ...|.+++|+|++++|+++
T Consensus       174 ~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~  251 (397)
T 1sq9_A          174 ELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA  251 (397)
T ss_dssp             EEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE
T ss_pred             eeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE
Confidence            44        2688999999999 88 99999999999999999887665 444   6   8999999999999999999


Q ss_pred             ecC---CcEEEEEcCCCceeeeEEeecc-------ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee
Q 006909          369 SIT---GTCHFYKASGNDLKLEKVDFHD-------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG  438 (626)
Q Consensus       369 ~~d---g~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~  438 (626)
                      +.|   |.|++||+.+...... +....       ....|...|.+++|+|++ .+|++++.|+.|++||+.+.......
T Consensus       252 ~~d~~~g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          252 HDSNSFGCITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             EEETTEEEEEEEETTTCCEEEE-ECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ecCCCCceEEEEECCCCcccce-eccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceeEEE
Confidence            999   9999999987765332 21100       000145899999999997 79999999999999998765444443


Q ss_pred             c------CC---------------CCCeEEEEEcCCC----------CEEEEEeCCccEEEEECCCC
Q 006909          439 L------PK---------------SGSQMSASFTTTG----------KHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       439 ~------~~---------------~~~v~~~~~sp~g----------~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .      .|               ...|.+++|+|++          ++|++++.||.|++|++.++
T Consensus       330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          330 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            3      45               8899999999998          79999999999999999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.98  E-value=7.5e-30  Score=256.65  Aligned_cols=281  Identities=18%  Similarity=0.254  Sum_probs=219.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909          184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  263 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (626)
                      .++|+||+++ +||+|. |++|+|||+.+++..                                           ....
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~-------------------------------------------~~~~   62 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL-------------------------------------------QLLQ   62 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE-------------------------------------------EEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE-------------------------------------------EEEE
Confidence            5789999986 777765 899999999884321                                           1223


Q ss_pred             eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                      +.+|...|++++|+|++ +|++|+.|++|++||+.+++++..+. |...+.++.+   ++..+++++.++.+++|+....
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSS
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCC
Confidence            45788899999999987 89999999999999999999988885 7777777655   5689999999999999998764


Q ss_pred             e--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE--E
Q 006909          342 R--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM--I  417 (626)
Q Consensus       342 ~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~--~  417 (626)
                      .  ......|...+..+.++++++++++++.||.|++||+.+.+.......   ....+...|.++.++|++...+.  +
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~  216 (318)
T 4ggc_A          140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVKAVAWCPWQSNVLATGG  216 (318)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE---EECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred             ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee---eecccCCceEEEEecCCCCcEEEEEe
Confidence            3  445678999999999999999999999999999999987654332111   12223478999999998766554  4


Q ss_pred             EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe--CCccEEEEECCCCCCCCCCccCCccceeeeccCC
Q 006909          418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG  495 (626)
Q Consensus       418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g  495 (626)
                      ++.++.|++||.......... .+...+..+.|+|+++.+++++  .|+.|++||+.++.                    
T Consensus       217 ~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--------------------  275 (318)
T 4ggc_A          217 GTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--------------------  275 (318)
T ss_dssp             CTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--------------------
T ss_pred             cCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--------------------
Confidence            567899999998755443333 3667899999999999988765  79999999987641                    


Q ss_pred             cEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       496 ~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                       .+..                                +.+|...|++++|+|||++|++++. |++|++||+...
T Consensus       276 -~~~~--------------------------------l~gH~~~V~~l~~spdg~~l~S~s~-D~~v~iWd~~~~  316 (318)
T 4ggc_A          276 -KVAE--------------------------------LKGHTSRVLSLTMSPDGATVASAAA-DETLRLWRCFEL  316 (318)
T ss_dssp             -EEEE--------------------------------ECCCSSCEEEEEECTTSSCEEEEET-TTEEEEECCSCC
T ss_pred             -EEEE--------------------------------EcCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEECCCC
Confidence             1110                                1234456778888899998999888 899999998654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.98  E-value=1.4e-29  Score=269.52  Aligned_cols=245  Identities=21%  Similarity=0.358  Sum_probs=206.8

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      .....++.+|.+.|++++|+|++ +|++|+.||+|++||+.++                                     
T Consensus       152 ~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~-------------------------------------  193 (464)
T 3v7d_B          152 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG-------------------------------------  193 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT-------------------------------------
T ss_pred             CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-------------------------------------
Confidence            34566788999999999999988 9999999999999999873                                     


Q ss_pred             CccccccCCCceeeccCccceEEEEEcC--CC-eEEEEeCCCcEEEeccCCCeee-----------------------Ee
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCL-----------------------NV  304 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~-~l~s~s~d~~v~iwd~~~~~~~-----------------------~~  304 (626)
                              ..+..+.+|...|.+++|++  ++ ++++++.|++|++||+.++...                       ..
T Consensus       194 --------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          194 --------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             --------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             --------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence                    34667889999999999984  55 8999999999999999876532                       22


Q ss_pred             e-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC
Q 006909          305 F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  382 (626)
Q Consensus       305 ~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~  382 (626)
                      + .|...|.++  ++ +++++++|+.||.|++||+++++.+. +..|...|.+++|+|+++++++|+.||.|++||+.++
T Consensus       266 ~~~~~~~v~~~--~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          266 LRGHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             ECCCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             ccCccceEEEE--cC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            2 477788877  45 78999999999999999999887654 5678999999999999999999999999999999887


Q ss_pred             ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 006909          383 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~  462 (626)
                      +.... +      ..|...|.+++|++   .++++++.||.|++||+.+....+... +...+..++|+|++++|++++ 
T Consensus       343 ~~~~~-~------~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-  410 (464)
T 3v7d_B          343 ELMYT-L------QGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-  410 (464)
T ss_dssp             EEEEE-E------CCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-
T ss_pred             cEEEE-E------eCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-
Confidence            65322 2      23458899999984   589999999999999998766666553 566788889999999999998 


Q ss_pred             CccEEEEECCCCCC
Q 006909          463 DCRVYVWNYDELCF  476 (626)
Q Consensus       463 dg~I~iwd~~~~~~  476 (626)
                      ||.|++||+.++..
T Consensus       411 dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          411 ENQFNIYNLRSGKL  424 (464)
T ss_dssp             TTEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcE
Confidence            89999999998743

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1.1e-30  Score=272.68  Aligned_cols=255  Identities=18%  Similarity=0.283  Sum_probs=211.9

Q ss_pred             cccccccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          173 TSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      ....+.+|.+.|++++|+| ++++||+|+.||+|+|||+.++....                                  
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~----------------------------------  118 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL----------------------------------  118 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------------------------------
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------------------------------
Confidence            3455789999999999999 99999999999999999998742110                                  


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEee--c-CCCCeEEEEEeeCCCCEEEE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF--D-HHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~--~-~~~~v~~~~~~p~~~~~l~s  326 (626)
                          ....++..+.+|...|.+++|+|++  +|++++.|++|++||+.+++.+..+  . |...|.+++|+| ++++|++
T Consensus       119 ----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  193 (402)
T 2aq5_A          119 ----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICT  193 (402)
T ss_dssp             ----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEE
T ss_pred             ----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEE
Confidence                0124577888999999999999985  8999999999999999999999888  3 889999999999 9999999


Q ss_pred             EeCCCcEEEEeCCCCeEEEe--ccCCCC-eEEEEEeeCCCEEEEE---ecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          327 GSIDGKVRIWGVCEKRVVDW--ADVRDV-ISAICYIPDGKGFIVG---SITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~~~~~--~~~~~~-i~~i~~sp~g~~l~~g---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      ++.||.|++||+++++....  ..|... +.++.|+|++++|++|   +.|+.|++||+.+...........     +..
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~  268 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-----TSS  268 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-----CCS
T ss_pred             EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-----CCC
Confidence            99999999999999887654  456655 8999999999999999   789999999998876533333222     236


Q ss_pred             CeEEEEEcCCCCcEE-EEEeCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          401 KITGIQFSRDESQRI-MITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l-~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+.+++|+|++. ++ ++++.|+.|++||+.+.   ...+..+.+...+.+++|+|++.++++  .++.+++|++.++
T Consensus       269 ~v~~~~~s~~~~-~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          269 GVLLPFFDPDTN-IVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             SCEEEEEETTTT-EEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             ceeEEEEcCCCC-EEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence            799999999984 55 46668999999997643   445555557789999999999998875  5779999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=6.9e-31  Score=273.80  Aligned_cols=295  Identities=15%  Similarity=0.181  Sum_probs=220.6

Q ss_pred             CCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeec--------------CCCCeEEEEEeeCCCC
Q 006909          259 SPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------------HHNYVTCVQFNPIDDN  322 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--------------~~~~v~~~~~~p~~~~  322 (626)
                      .....+.+|.+.|++++|+| ++ +|++++.||.|++||+.++.....+.              |...|.+++|+|.+++
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            45667788999999999999 77 89999999999999999876655543              8899999999996778


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909          323 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  399 (626)
Q Consensus       323 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  399 (626)
                      +|++++.||.|++||+.+++......+...+.++.++|.   +.++++++.+|.|++||+.+...... +      ..|.
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~------~~~~  186 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI-L------QGHR  186 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE-E------CCCC
T ss_pred             EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee-e------cCCC
Confidence            999999999999999999998888889999999999995   45999999999999999987754322 2      2345


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce---eeee-------------ecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---HKFK-------------GLPKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~-------------~~~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                      ..|++++|+|++..++++++.||.|++||++...   ..+.             ...|...|.+++|+|++++|++++.|
T Consensus       187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  266 (408)
T 4a11_B          187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD  266 (408)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence            7999999999985579999999999999986432   1111             13477899999999999999999999


Q ss_pred             ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCc
Q 006909          464 CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGS  543 (626)
Q Consensus       464 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  543 (626)
                      |.|++||+.++...........    .....+                                           .....
T Consensus       267 g~i~vwd~~~~~~~~~~~~~~~----~~~~~~-------------------------------------------~~~~~  299 (408)
T 4a11_B          267 NRMRLWNSSNGENTLVNYGKVC----NNSKKG-------------------------------------------LKFTV  299 (408)
T ss_dssp             SCEEEEETTTCCBCCCCCCCCC----CCCSSC-------------------------------------------CCCEE
T ss_pred             CeEEEEECCCCccceecccccc----cccccc-------------------------------------------ceeEE
Confidence            9999999987632111100000    000000                                           00000


Q ss_pred             cccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccc--ccccccceEEEEecCCceEeeeeecC
Q 006909          544 WFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGLVIVTAGCDGMIKTFHNYG  621 (626)
Q Consensus       544 ~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg~~ivt~g~Dg~Irvw~~~g  621 (626)
                       ....+..++.++. ++.|.+||+.++           ........|...+.  ++++ +|.+|+||+.||+|++|+...
T Consensus       300 -~~~~~~~~~~~~~-~~~i~v~d~~~~-----------~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          300 -SCGCSSEFVFVPY-GSTIAVYTVYSG-----------EQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             -CCSSSSCEEEEEE-TTEEEEEETTTC-----------CEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC
T ss_pred             -ecCCCceEEEEec-CCEEEEEECcCC-----------cceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCC
Confidence             1111222444444 688999999887           22223333444433  4555 899999999999999999643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=4.5e-30  Score=270.40  Aligned_cols=257  Identities=21%  Similarity=0.296  Sum_probs=210.2

Q ss_pred             cccccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          177 IQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       177 l~~H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      +.+|.+.|++++|+|+ +.+||+|+.||.|+||++.+......                                   ..
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------------------------~~  168 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------------------------PS  168 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------------TT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------------------------cc
Confidence            4479999999999997 67999999999999999975211000                                   00


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCee-------eEee-cCCCCeEEEEEeeCCCCEEE
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~-------~~~~-~~~~~v~~~~~~p~~~~~l~  325 (626)
                      ....++..+.+|...|.+++|+|++  +|++|+.||+|++||+.++..       ...+ .|...|.+++|+|.++.+|+
T Consensus       169 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~  248 (430)
T 2xyi_A          169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG  248 (430)
T ss_dssp             CCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEE
T ss_pred             ccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEE
Confidence            0135577888999999999999975  899999999999999987322       2333 58889999999997788999


Q ss_pred             EEeCCCcEEEEeCCCC----eEEEeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          326 SGSIDGKVRIWGVCEK----RVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~----~~~~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      +++.||.|++||++++    .......|...|++++|+|++. .+++|+.||.|++||++........+..      |..
T Consensus       249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~------h~~  322 (430)
T 2xyi_A          249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES------HKD  322 (430)
T ss_dssp             EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC------CSS
T ss_pred             EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec------CCC
Confidence            9999999999999876    3344568899999999999987 6889999999999999875544433332      347


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc--------------ceeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCcc
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGVD--------------VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCR  465 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~  465 (626)
                      .|++++|+|++..+|++++.|+.|+|||+..              ....+....|...|.+++|+|+++ +|++++.||.
T Consensus       323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~  402 (430)
T 2xyi_A          323 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI  402 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence            9999999999877899999999999999765              233444455788999999999999 8999999999


Q ss_pred             EEEEECCCC
Q 006909          466 VYVWNYDEL  474 (626)
Q Consensus       466 I~iwd~~~~  474 (626)
                      |+||++...
T Consensus       403 i~iw~~~~~  411 (430)
T 2xyi_A          403 MQVWQMAEN  411 (430)
T ss_dssp             EEEEEECHH
T ss_pred             EEEeEcccc
Confidence            999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.1e-29  Score=267.89  Aligned_cols=281  Identities=20%  Similarity=0.305  Sum_probs=222.8

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .+|...|++++|  ++++|++|+.||.|++||+.+                                             
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~---------------------------------------------  162 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT---------------------------------------------  162 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS---------------------------------------------
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC---------------------------------------------
Confidence            457778999887  789999999999999999987                                             


Q ss_pred             CCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      ......+.+|...|.+++| .+..|++|+.||+|++||+.+++++..+. |...|.+++|+   ++++++|+.||.|++|
T Consensus       163 ~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vw  238 (435)
T 1p22_A          163 LECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVW  238 (435)
T ss_dssp             CCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEE
Confidence            3446778899999999999 33599999999999999999999988885 88899999996   4699999999999999


Q ss_pred             eCCCCeE----EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          337 GVCEKRV----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       337 d~~~~~~----~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      |+.++..    ....+|...|.+++|  +++++++|+.||.|++||+.+...... +.      .|...|.++.|++   
T Consensus       239 d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~------~~~~~v~~~~~~~---  306 (435)
T 1p22_A          239 DMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT-LN------GHKRGIACLQYRD---  306 (435)
T ss_dssp             ECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE-EE------CCSSCEEEEEEET---
T ss_pred             eCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE-Ec------CCCCcEEEEEeCC---
Confidence            9987654    346688899999998  788999999999999999998765332 22      2347899999953   


Q ss_pred             cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec
Q 006909          413 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  492 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  492 (626)
                      .++++++.||.|++||+.+.........|...|.+++|  ++.+|++|+.||.|++||+.++..+....           
T Consensus       307 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----------  373 (435)
T 1p22_A          307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA-----------  373 (435)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT-----------
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccc-----------
Confidence            58999999999999998866555555568899999998  78999999999999999997642111000           


Q ss_pred             cCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       493 ~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                       ....+.                                .+..+...+.+++|  |+.++++++. |+.|++||+...
T Consensus       374 -~~~~~~--------------------------------~~~~h~~~v~~l~~--~~~~l~s~s~-Dg~i~iwd~~~~  415 (435)
T 1p22_A          374 -GTLCLR--------------------------------TLVEHSGRVFRLQF--DEFQIVSSSH-DDTILIWDFLND  415 (435)
T ss_dssp             -TTTEEE--------------------------------EECCCSSCCCCEEE--CSSCEEECCS-SSEEEEEC----
T ss_pred             -cchhee--------------------------------eccCCCCCeEEEEe--CCCEEEEEeC-CCEEEEEECCCC
Confidence             000000                                02234445677777  7888999888 899999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.2e-29  Score=264.66  Aligned_cols=240  Identities=21%  Similarity=0.351  Sum_probs=203.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .|.+.|++++|+|+|++|++|+.||.|++||+.+                                             .
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~---------------------------------------------~  166 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES---------------------------------------------Q  166 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT---------------------------------------------C
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC---------------------------------------------C
Confidence            3899999999999999999999999999999987                                             3


Q ss_pred             CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccC-CCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~-~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      ..+..+.+|...|.+++|++ ..|++++.|+.|++||+. .+..+..+ .|...|.+++|+| ++++|++|+.|+.|++|
T Consensus       167 ~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iw  244 (401)
T 4aez_A          167 TKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIW  244 (401)
T ss_dssp             CEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred             eEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEc
Confidence            44677789999999999954 589999999999999998 45555555 5899999999999 99999999999999999


Q ss_pred             eCCCCeEE-EeccCCCCeEEEEEeeCCC-EEEEEe--cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          337 GVCEKRVV-DWADVRDVISAICYIPDGK-GFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       337 d~~~~~~~-~~~~~~~~i~~i~~sp~g~-~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      |+++++.. .+..|...|.+++|+|++. .+++++  .|+.|++||+.+...... +.       +...|++++|+|++ 
T Consensus       245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~-~~-------~~~~v~~~~~s~~~-  315 (401)
T 4aez_A          245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT-VD-------AGSQVTSLIWSPHS-  315 (401)
T ss_dssp             ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-EE-------CSSCEEEEEECSSS-
T ss_pred             cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-Ee-------CCCcEEEEEECCCC-
Confidence            99987765 4567899999999999775 455544  699999999988765332 21       13689999999998 


Q ss_pred             cEEEEE--eCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          413 QRIMIT--SEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       413 ~~l~~~--s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+++++  +.||.|++||+..  .........|...|.+++|+|++++|++++.||.|++|++.++
T Consensus       316 ~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred             CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            677774  4899999999775  4444445568899999999999999999999999999999886

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=2.4e-29  Score=264.01  Aligned_cols=242  Identities=18%  Similarity=0.316  Sum_probs=202.5

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      +.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+                                            
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--------------------------------------------  178 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--------------------------------------------  178 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------------------------------------
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--------------------------------------------
Confidence            457889999999999999999999999999999987                                            


Q ss_pred             cCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCe-eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                       .+.+..+.+|...+.++++++ ..|++|+.|+.+++||..... .+..+ .|...+..+.++| ++.++++++.|+.|+
T Consensus       179 -~~~~~~~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~  255 (420)
T 4gga_A          179 -QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVN  255 (420)
T ss_dssp             -TEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             -CcEEEEEeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccce
Confidence             345677889999999999864 489999999999999987643 33444 5899999999999 999999999999999


Q ss_pred             EEeCCCCe-----EEEeccCCCCeEEEEEeeCCC-EEEE--EecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          335 IWGVCEKR-----VVDWADVRDVISAICYIPDGK-GFIV--GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       335 iwd~~~~~-----~~~~~~~~~~i~~i~~sp~g~-~l~~--g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +|+...++     +.....+...|.+++|+|.+. .+++  |+.|++|++||+.++..... +..       ...+.++.
T Consensus       256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~-~~~-------~~~v~~~~  327 (420)
T 4gga_A          256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDA-------HSQVCSIL  327 (420)
T ss_dssp             EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE-EEC-------SSCEEEEE
T ss_pred             EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee-ecc-------ccceeeee
Confidence            99998754     345677889999999999765 4444  35799999999998765432 221       26799999


Q ss_pred             EcCCCCcEEEEEe--CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          407 FSRDESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       407 ~s~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |+|++ ..+++++  .|+.|+|||..+.........|...|.+++|+|+|++|+||+.|++|+|||+.+.
T Consensus       328 ~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          328 WSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             EETTT-TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             ecCCC-CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            99998 4565544  7899999998866665555668999999999999999999999999999999765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.7e-29  Score=249.45  Aligned_cols=247  Identities=20%  Similarity=0.281  Sum_probs=204.9

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      .....+..|.+.|++++|+|++++|++|+.||.|++|++.....                                    
T Consensus        50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------------------------------------   93 (313)
T 3odt_A           50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG------------------------------------   93 (313)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT------------------------------------
T ss_pred             EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC------------------------------------
Confidence            34556778999999999999999999999999999999976321                                    


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                            ..++..+.+|...|.+++|. ++.|++++.|+.|++||  .++....+ .|...+.+++|.|.+++++++++.|
T Consensus        94 ------~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  164 (313)
T 3odt_A           94 ------EDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD  164 (313)
T ss_dssp             ------SCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred             ------CCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence                  34567778999999999993 45999999999999999  55666655 4889999999998889999999999


Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      |.|++||...........+...+.+++|+|++. +++++.||.|++||+++.+.... +.      .|...|++++|+|+
T Consensus       165 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~-~~------~~~~~i~~~~~~~~  236 (313)
T 3odt_A          165 KTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT-YE------GHESFVYCIKLLPN  236 (313)
T ss_dssp             SCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE-EE------CCSSCEEEEEECTT
T ss_pred             CCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh-hh------cCCceEEEEEEecC
Confidence            999999944333333333889999999999998 99999999999999988765332 22      23578999999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +  .+++++.|+.|++||+.+.........+...|.+++|+|+++ +++++.||.|++|++.++
T Consensus       237 ~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          237 G--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             S--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             C--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            7  589999999999999876554444455788999999999998 567889999999999876

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=2.8e-29  Score=250.55  Aligned_cols=252  Identities=17%  Similarity=0.190  Sum_probs=192.9

Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC--CeeeEee-cCCCCeEEEEEeeC-CCCEEEEEeCCCcEEEE
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVRIW  336 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~--~~~~~~~-~~~~~v~~~~~~p~-~~~~l~s~s~dg~v~iw  336 (626)
                      ..+.+|...|++++|+|++ +|++|+.|++|+|||+.+  .+++..+ .|..+|.+++|+|. ++++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            4567899999999999998 999999999999999974  3566666 59999999999862 38899999999999999


Q ss_pred             eCCCCe---EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          337 GVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       337 d~~~~~---~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      |+.+++   ......|...|.+++|+|+  |.+|++++.||.|++||++....... ..    ...|...|.+++|+|++
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~----~~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-II----IDAHAIGVNSASWAPAT  157 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EE----EECCSSCEEEEEECCCC
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-ee----eecccCccceEeecCCc
Confidence            998763   3445678899999999997  89999999999999999987532211 11    12345789999999973


Q ss_pred             ------------CcEEEEEeCCCcEEEEeCCcce----eeeeecCCCCCeEEEEEcCCC---CEEEEEeCCccEEEEECC
Q 006909          412 ------------SQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       412 ------------~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~g---~~l~s~s~dg~I~iwd~~  472 (626)
                                  ..+|++++.|++|++||+....    .......|...|.+++|+|++   ++|++++.|++|+|||+.
T Consensus       158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                        2589999999999999976422    222334588999999999985   899999999999999998


Q ss_pred             CCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccc
Q 006909          473 ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  526 (626)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~  526 (626)
                      +...+......   .  .-...+.+.+++|+|++..|+..+.+   +.+.+|+.
T Consensus       238 ~~~~~~~~~~~---~--~~~~~~~v~~~~~s~~g~~las~~~D---~~v~lw~~  283 (297)
T 2pm7_B          238 NEQGPWKKTLL---K--EEKFPDVLWRASWSLSGNVLALSGGD---NKVTLWKE  283 (297)
T ss_dssp             STTSCCEEEES---S--SSCCSSCEEEEEECSSSCCEEEEETT---SCEEEEEE
T ss_pred             CCCCccceeee---e--cccCCCcEEEEEECCCCCEEEEEcCC---CcEEEEEE
Confidence            64211100000   0  00123456778888888877765554   34666765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.8e-30  Score=264.25  Aligned_cols=291  Identities=13%  Similarity=0.081  Sum_probs=226.5

Q ss_pred             eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe----eeEeecCCCCeEEEEEeeCCCC-EEEEEeCCCcEEEEe
Q 006909          264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDN-YFISGSIDGKVRIWG  337 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~~p~~~~-~l~s~s~dg~v~iwd  337 (626)
                      ..+|.+.|++++|+|++ +|++++.|+.|++||+.++.    ......|...|.+++|+| +++ +|++|+.||.|++||
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEEC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEE
Confidence            45899999999999987 89999999999999998877    555667999999999999 899 999999999999999


Q ss_pred             C-CCCeEEEecc--CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC---------CceeeeEEeeccccccCCCCeEEE
Q 006909          338 V-CEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASG---------NDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       338 ~-~~~~~~~~~~--~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      + .+++...+..  |...|.+++|+| ++.+++++.|+.|++||+.+         .....        ...+...|.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~  156 (342)
T 1yfq_A           86 LIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--------NTKVKNKIFTM  156 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--------SSSSCCCEEEE
T ss_pred             eccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--------EEeeCCceEEE
Confidence            9 9988888888  999999999999 99999999999999999875         32211        11145889999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCc-ce--eeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVD-VI--HKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQ  481 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~  481 (626)
                      +|+|++   +++++.|+.|++||+.. ..  .......+...+.+++|+| +++++++++.||.|++|+++........ 
T Consensus       157 ~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-  232 (342)
T 1yfq_A          157 DTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS-  232 (342)
T ss_dssp             EECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC-
T ss_pred             EecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc-
Confidence            999974   99999999999999876 32  2333345778999999999 9999999999999999999764100000 


Q ss_pred             cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCC
Q 006909          482 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK  561 (626)
Q Consensus       482 ~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~  561 (626)
                       . .           ...+......                        ..-..+...+..++|+|+|+++++++. ++.
T Consensus       233 -~-~-----------~~~~~~~~~~------------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~  274 (342)
T 1yfq_A          233 -S-K-----------RFAFRCHRLN------------------------LKDTNLAYPVNSIEFSPRHKFLYTAGS-DGI  274 (342)
T ss_dssp             -T-T-----------CEEEECCCCC------------------------TTCCSSCCCEEEEEECTTTCCEEEEET-TSC
T ss_pred             -c-c-----------ceeeeccccc------------------------ccccccceeEEEEEEcCCCCEEEEecC-Cce
Confidence             0 0           0000000000                        001133446788899999999999888 799


Q ss_pred             CCCCCcccCCCCCCCChhhHHHHhhhccC-CccccccccccceEEEEecCCce-Eeeee
Q 006909          562 LPLWDVTIDSDGYCQDPQQQRLQQQCLNN-VDDVRAISATWGLVIVTAGCDGM-IKTFH  618 (626)
Q Consensus       562 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~dg~~ivt~g~Dg~-Irvw~  618 (626)
                      |++||+.++           ........+ ...+..+. .+|.+|++|+.||+ .+.|.
T Consensus       275 i~vwd~~~~-----------~~~~~~~~~h~~~v~~~~-~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          275 ISCWNLQTR-----------KKIKNFAKFNEDSVVKIA-CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEETTTT-----------EEEEECCCCSSSEEEEEE-ECSSEEEEEEECTHHHHCSS
T ss_pred             EEEEcCccH-----------hHhhhhhcccCCCceEec-CCCCeEEEEecCCccccccc
Confidence            999999887           222333344 55555666 68999999999999 55555

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=1.7e-30  Score=261.82  Aligned_cols=254  Identities=17%  Similarity=0.217  Sum_probs=191.1

Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEee-CCCCEEEEEeCCCcEEEE
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNP-IDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p-~~~~~l~s~s~dg~v~iw  336 (626)
                      ..+.+|...|++++|+|++ +|++|+.|++|+|||+.++.  ++..+ .|...|.+++|+| .++++|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3456899999999999987 89999999999999998775  34445 5999999999976 248899999999999999


Q ss_pred             eCCCCe---EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          337 GVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       337 d~~~~~---~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      |++++.   ...+..|...|.+++|+|+  +.+|++|+.|++|++||+.......    .......|...|.+++|+|++
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE----VKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----ECCBTTSSSSCBCCCEECCCC
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----eeeeeccccCCcceEEEcccc
Confidence            998763   3446679999999999998  8899999999999999998653211    111233456789999999973


Q ss_pred             ----------------CcEEEEEeCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCC----CEEEEEeCCccEEE
Q 006909          412 ----------------SQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV  468 (626)
Q Consensus       412 ----------------~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g----~~l~s~s~dg~I~i  468 (626)
                                      ..+|++++.|++|++||....   ........|...|.+++|+|++    ++|++++.|++|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                            258999999999999997632   2223334588999999999987    89999999999999


Q ss_pred             EECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCC
Q 006909          469 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSND  548 (626)
Q Consensus       469 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~d  548 (626)
                      |++.+.....    . .         ...                                   +..+...+.+++|+|+
T Consensus       243 w~~~~~~~~~----~-~---------~~~-----------------------------------~~~~~~~v~~v~~sp~  273 (316)
T 3bg1_A          243 WTCDDASSNT----W-S---------PKL-----------------------------------LHKFNDVVWHVSWSIT  273 (316)
T ss_dssp             EECSSTTCCC----C-B---------CCE-----------------------------------EEECSSCEEEEEECTT
T ss_pred             EEccCccccc----h-h---------hhh-----------------------------------hhcCCCcEEEEEEcCC
Confidence            9987631000    0 0         000                                   0112234667778888


Q ss_pred             CCcccccCCCCCCCCCCCccc
Q 006909          549 GPCRGSATWPAEKLPLWDVTI  569 (626)
Q Consensus       549 g~~l~s~~~~d~~i~vwd~~~  569 (626)
                      |+++++++. |+.|++|+...
T Consensus       274 g~~las~~~-D~~v~lw~~~~  293 (316)
T 3bg1_A          274 ANILAVSGG-DNKVTLWKESV  293 (316)
T ss_dssp             TCCEEEEES-SSCEEEEEECT
T ss_pred             CCEEEEEcC-CCeEEEEEECC
Confidence            888888887 78899998653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=3.9e-29  Score=260.87  Aligned_cols=275  Identities=15%  Similarity=0.177  Sum_probs=213.1

Q ss_pred             CcEEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          182 GCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       182 ~~V~~l~fspdg~~-Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      .....++++|+... +++|+.||.|+||++......                                         ...
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------------------------~~~   73 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------------------------DKN   73 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------------------------CTT
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------------------------CCC
Confidence            34556889998764 446788999999998652110                                         134


Q ss_pred             ceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCC-------eeeEee-cCCCCeEEEEEeeCCC-CEEEEEeC
Q 006909          261 LQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCN-------QCLNVF-DHHNYVTCVQFNPIDD-NYFISGSI  329 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~-------~~~~~~-~~~~~v~~~~~~p~~~-~~l~s~s~  329 (626)
                      +..+.+|.+.|++++|+| ++ +|++|+.||+|++||+.++       +.+..+ .|...|.+++|+| ++ ++|++++.
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~  152 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGC  152 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEET
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcC
Confidence            556789999999999999 66 9999999999999999887       445555 4899999999999 76 79999999


Q ss_pred             CCcEEEEeCCCCeEEEe---ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          330 DGKVRIWGVCEKRVVDW---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~~---~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      ||.|++||+.+++....   ..|...|.+++|+|++++|++++.||.|++||+++..........+.     ...+.++.
T Consensus       153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~  227 (402)
T 2aq5_A          153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE-----GTRPVHAV  227 (402)
T ss_dssp             TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSC-----SSSCCEEE
T ss_pred             CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCC-----CCcceEEE
Confidence            99999999999887654   56899999999999999999999999999999998765432211221     13489999


Q ss_pred             EcCCCCcEEEEE---eCCCcEEEEeCCccee--eeeecCCCCCeEEEEEcCCCCEEEE-EeCCccEEEEECCCCCCCCCC
Q 006909          407 FSRDESQRIMIT---SEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDELCFPSSK  480 (626)
Q Consensus       407 ~s~~~~~~l~~~---s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~s-~s~dg~I~iwd~~~~~~~~~~  480 (626)
                      |+|++ .+++++   +.|+.|++||+.....  ......+...+..++|+|++++|++ ++.|+.|++|++.++...   
T Consensus       228 ~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~---  303 (402)
T 2aq5_A          228 FVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF---  303 (402)
T ss_dssp             ECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC---
T ss_pred             EcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc---
Confidence            99997 788888   7999999999875332  2223346778999999999999975 557999999999875310   


Q ss_pred             ccCCccceeeeccCCcEEEEecCCCCccccc
Q 006909          481 QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS  511 (626)
Q Consensus       481 ~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~  511 (626)
                          ......+...+.+.+++|+|++..++.
T Consensus       304 ----~~~l~~~~~~~~v~~~~~sp~~~~~~s  330 (402)
T 2aq5_A          304 ----LHYLSMFSSKESQRGMGYMPKRGLEVN  330 (402)
T ss_dssp             ----EEEEEEECCSSCCSEEEECCGGGSCGG
T ss_pred             ----eEeecccccCCcccceEEeccccccee
Confidence                111122223456678888888887764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.3e-29  Score=256.69  Aligned_cols=308  Identities=10%  Similarity=0.074  Sum_probs=207.8

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      +++.+|.+.|++++|+|||++||+|+.+| ++||++.++..                                       
T Consensus        13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~---------------------------------------   52 (355)
T 3vu4_A           13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH---------------------------------------   52 (355)
T ss_dssp             ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE---------------------------------------
T ss_pred             cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce---------------------------------------
Confidence            34578999999999999999999998776 78999876321                                       


Q ss_pred             cccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                            ....  +...+..+++.+++  .+++++.|++|++||+.+++++..+.+...|.+++|++ +  .++++ .++.
T Consensus        53 ------~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~-~--~~~~~-~~~~  120 (355)
T 3vu4_A           53 ------IMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSR-E--FIVVS-YGDV  120 (355)
T ss_dssp             ------EEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECS-S--EEEEE-ETTE
T ss_pred             ------eeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcC-C--EEEEE-EcCE
Confidence                  1111  11246677777654  44678888999999999999999999999999999986 3  45544 4789


Q ss_pred             EEEEeCCCC-eEEEeccCCCCeEEEEEeeCCCEEEE--EecCCcEEEEEcCCCceeee--------EEee-ccccccCCC
Q 006909          333 VRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHFYKASGNDLKLE--------KVDF-HDRKKTSGN  400 (626)
Q Consensus       333 v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~--g~~dg~i~i~d~~~~~~~~~--------~~~~-~~~~~~~~~  400 (626)
                      |++||+.++ +.+.....  ....+++++  .++++  |+.+|.|++||+.+......        .+.. ......|..
T Consensus       121 i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~  196 (355)
T 3vu4_A          121 ISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN  196 (355)
T ss_dssp             EEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS
T ss_pred             EEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC
Confidence            999999887 44332222  444566677  56666  58899999999987541100        0000 111344668


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCc-EEEEeCCcceeeeeec-C-CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909          401 KITGIQFSRDESQRIMITSEDSK-LRILDGVDVIHKFKGL-P-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  477 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~-~-~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~  477 (626)
                      .|++++|+|+| .+|++++.|++ |++||+.+........ . |...|.+++|+|+|++|++++.|++|++||+......
T Consensus       197 ~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~  275 (355)
T 3vu4_A          197 PIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDN  275 (355)
T ss_dssp             CEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCC
T ss_pred             ceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCc
Confidence            99999999997 79999999998 9999988655444443 2 7899999999999999999999999999999875211


Q ss_pred             CCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCC
Q 006909          478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW  557 (626)
Q Consensus       478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~  557 (626)
                      ........     +.|.  .    +.                  ..|.... .............++|++||+++++++.
T Consensus       276 ~~~~~~~~-----~~~~--~----~~------------------~~~~~~~-~~~~~~~~~~~~~~a~~~d~~~l~~~~~  325 (355)
T 3vu4_A          276 KRHALKGW-----INMK--Y----FQ------------------SEWSLCN-FKLSVDKHVRGCKIAWISESSLVVVWPH  325 (355)
T ss_dssp             CSEETTTT-----EECC--C----CC------------------CSSCSEE-EECCCCTTCCCCEEEESSSSEEEEEETT
T ss_pred             ccccccce-----eecc--c----cc------------------cccceeE-EEeccCCCCCceEEEEeCCCCEEEEEeC
Confidence            11000000     0000  0    00                  0011000 0000111122355789999999988887


Q ss_pred             CCCCCCCCCcccC
Q 006909          558 PAEKLPLWDVTID  570 (626)
Q Consensus       558 ~d~~i~vwd~~~~  570 (626)
                       |+.+++|++..+
T Consensus       326 -dg~~~~~~~~~~  337 (355)
T 3vu4_A          326 -TRMIETFKVVFD  337 (355)
T ss_dssp             -TTEEEEEEEEEE
T ss_pred             -CCeEEEEEEEcC
Confidence             799999998776

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=5e-29  Score=253.26  Aligned_cols=298  Identities=14%  Similarity=0.139  Sum_probs=210.5

Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC----eeeEee-cCCCCeEEEEEeeC-CCCEEEEEeCCCcEE
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVR  334 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~----~~~~~~-~~~~~v~~~~~~p~-~~~~l~s~s~dg~v~  334 (626)
                      ..+.+|.+.|++++|+|++ +|++|+.||.|++||+.++    +....+ .|...|++++|+|. ++++|++|+.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            4567999999999999988 8999999999999999876    344444 48999999999984 489999999999999


Q ss_pred             EEeCCCCe----------EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeee-E-----Eeeccccc
Q 006909          335 IWGVCEKR----------VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLE-K-----VDFHDRKK  396 (626)
Q Consensus       335 iwd~~~~~----------~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~-~-----~~~~~~~~  396 (626)
                      +||+.++.          ......|...|.+++|+|+  ++++++++.||.|++||+.+...... .     ........
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99998752          4456788999999999999  99999999999999999987664322 1     01111122


Q ss_pred             cCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEeCCcce--eeeeecCCCCCeEEEEEcCCC----CEEEEEeCCccEEE
Q 006909          397 TSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV  468 (626)
Q Consensus       397 ~~~~~i~~l~~s~~--~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~g----~~l~s~s~dg~I~i  468 (626)
                      .+...+.+++|+|+  ...++++++.++.+.+|+.....  .......|...|.+++|+|++    ++|++++.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            45678999999997  23799999999999888865432  234445588999999999998    89999999999999


Q ss_pred             EECCCCCCCCCCccCC-ccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC--CCcccCCCcccCCccc
Q 006909          469 WNYDELCFPSSKQKNS-VRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET--APWIRDSERFSLGSWF  545 (626)
Q Consensus       469 wd~~~~~~~~~~~~~~-~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~~~~  545 (626)
                      ||+..+.......... ........+.....+...          ...........|.....  ......|...+++++|
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  314 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR----------SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW  314 (351)
T ss_dssp             EEEEECC-------------------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccc----------cccccceeeeecccccccEEEEEecccccEEEEEE
Confidence            9998763322211110 000111111111111110          00111112222332221  1234567778999999


Q ss_pred             cCCCCcccccCCCCCCCCCCCcccC
Q 006909          546 SNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       546 s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      +|+|+++++++. |+.|++|++.++
T Consensus       315 s~~~~~l~s~~~-dg~v~iw~~~~~  338 (351)
T 3f3f_A          315 NLTGTILSSAGD-DGKVRLWKATYS  338 (351)
T ss_dssp             CSSSCCEEEEET-TSCEEEEEECTT
T ss_pred             cCCCCEEEEecC-CCcEEEEecCcC
Confidence            999999999998 899999999876

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=6.2e-28  Score=255.29  Aligned_cols=276  Identities=19%  Similarity=0.310  Sum_probs=217.9

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      ....+.+.+|.+.|++++|+  +++|++|+.||+|++||+.++                                     
T Consensus       149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~-------------------------------------  189 (445)
T 2ovr_B          149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG-------------------------------------  189 (445)
T ss_dssp             CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-------------------------------------
T ss_pred             CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC-------------------------------------
Confidence            34566788999999999997  569999999999999999873                                     


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                              ..+..+.+|...|.+++|++ +.+++|+.|++|++||+.+++++..+. |...|.+++|   +++++++|+.
T Consensus       190 --------~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~  257 (445)
T 2ovr_B          190 --------ECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAY  257 (445)
T ss_dssp             --------EEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEET
T ss_pred             --------cEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcC
Confidence                    44677789999999999964 579999999999999999999888874 8899999998   6789999999


Q ss_pred             CCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          330 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      ||.|++||+++++... +..|...|.+++|  ++.++++++.||.|++||+.+...... +      ..|...+.++.++
T Consensus       258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~-~------~~~~~~v~~~~~~  328 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT-L------TGHQSLTSGMELK  328 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE-E------CCCCSCEEEEEEE
T ss_pred             CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE-E------cCCcccEEEEEEe
Confidence            9999999999887654 5578899999998  889999999999999999988765332 2      2334678888875


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeeeeec---CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCc
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKFKGL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV  485 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  485 (626)
                      +   .++++++.||.|++||+.+........   .|...|.+++|+  +++|++|+.||.|++||+.++........   
T Consensus       329 ~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---  400 (445)
T 2ovr_B          329 D---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT---  400 (445)
T ss_dssp             T---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE---
T ss_pred             C---CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeec---
Confidence            3   489999999999999987544433332   277889999995  68999999999999999998632211100   


Q ss_pred             cceeeeccCCcEEEEecCCCCcccccccCCC
Q 006909          486 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS  516 (626)
Q Consensus       486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~  516 (626)
                        ...-.+.+.+.+++|+|++..++..+.++
T Consensus       401 --~~~~~~~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          401 --LESGGSGGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             --CTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             --cccCCCCceEEEEEecCCEEEEEEcccCC
Confidence              00012345566677777766666554443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=9.7e-28  Score=241.18  Aligned_cols=242  Identities=17%  Similarity=0.289  Sum_probs=199.3

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      +.+|...|++++|+|+|++||+|+.||+|+||++.+                                            
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~--------------------------------------------   98 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--------------------------------------------   98 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------------------------
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC--------------------------------------------
Confidence            457899999999999999999999999999999987                                            


Q ss_pred             cCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCee-eEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC-LNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                       .+.+..+.+|...+.++.+.+ ..+++++.++.+++|+...... +..+ .|...+.++.+.+ +++++++++.|++|+
T Consensus        99 -~~~~~~~~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~  175 (318)
T 4ggc_A           99 -QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVN  175 (318)
T ss_dssp             -TEEEEEEECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             -ceeEEEecCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCccee
Confidence             345677889999998877654 4899999999999999876543 3333 5889999999999 999999999999999


Q ss_pred             EEeCCCCe-----EEEeccCCCCeEEEEEeeCCCEE---EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          335 IWGVCEKR-----VVDWADVRDVISAICYIPDGKGF---IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       335 iwd~~~~~-----~~~~~~~~~~i~~i~~sp~g~~l---~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +||+++++     ......+...|.++.++|++..+   ++++.++.|++||..........  .      +...+..+.
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~------~~~~v~~~~  247 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--D------AHSQVCSIL  247 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--E------CSSCEEEEE
T ss_pred             EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--c------ceeeeeeee
Confidence            99998764     23456677889999999977644   35667899999999876653321  1      236799999


Q ss_pred             EcCCCCcEEEEE--eCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          407 FSRDESQRIMIT--SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       407 ~s~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |+|++. .++++  +.|+.|++||+.+.........|...|++++|+|+|++|+||+.||+|+|||+.+.
T Consensus       248 ~~~~~~-~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          248 WSPHYK-ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EETTTT-EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             eccccc-ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            999984 55544  37999999998866555555668999999999999999999999999999999763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=1.3e-27  Score=252.58  Aligned_cols=203  Identities=15%  Similarity=0.254  Sum_probs=164.2

Q ss_pred             cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe-----------eeEee-cCC------------CCeEEEEEeeCC
Q 006909          266 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-----------CLNVF-DHH------------NYVTCVQFNPID  320 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~-----------~~~~~-~~~------------~~v~~~~~~p~~  320 (626)
                      .|.+.|++++|+|++ +|++|+.||.|+|||+.+++           +...+ .|.            ..|++++|+| +
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-Q  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-C
Confidence            468899999999998 99999999999999998776           34455 476            8899999999 7


Q ss_pred             C--CEEEEEeCCCcEEEEeCCCCeEE-----------------------------------------EeccCCCCeEEEE
Q 006909          321 D--NYFISGSIDGKVRIWGVCEKRVV-----------------------------------------DWADVRDVISAIC  357 (626)
Q Consensus       321 ~--~~l~s~s~dg~v~iwd~~~~~~~-----------------------------------------~~~~~~~~i~~i~  357 (626)
                      +  .+|++++.|++|++||+.++...                                         ....|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            6  79999999999999998764431                                         1357889999999


Q ss_pred             EeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeec-cccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce---
Q 006909          358 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH-DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---  433 (626)
Q Consensus       358 ~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~---  433 (626)
                      |+|++++|++| .||.|++||+.........+... .....|...|++++|+|++..+|++++.|+.|++||++...   
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99999999999 79999999998543333322111 12345678999999999975799999999999999987543   


Q ss_pred             ---eeeeecCCCC------------CeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          434 ---HKFKGLPKSG------------SQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       434 ---~~~~~~~~~~------------~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                         ..+..  +..            .|.+++|+|+|++|++++. +.|++||+..
T Consensus       264 ~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          264 RHSKLFEE--PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             TTCEEECC--C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             ceeeEecc--CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence               33333  443            8999999999999999998 9999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.9e-28  Score=256.46  Aligned_cols=280  Identities=11%  Similarity=-0.007  Sum_probs=197.0

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---ceeeeecCCCCCccC-C--C-CCeeeecCCC--CCCce----e
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA---ASCKSFTDDGGFGSN-A--K-EGKIKFGKKK--SSHVP----V  247 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~--~~~~~----~  247 (626)
                      ..+|.+++|+|+|++|++++ ++.|++||+.++.   ............... .  . ..........  .....    .
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            35789999999999777664 7899999999887   322211111100000 0  0 0000000000  00000    0


Q ss_pred             ecCCccccccCCCceeeccCccceEEEEEcCCC-eE-EEEeCCCcEEEeccC--CCeeeEee---cCCCCeEEEEEeeCC
Q 006909          248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVG--CNQCLNVF---DHHNYVTCVQFNPID  320 (626)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d~~v~iwd~~--~~~~~~~~---~~~~~v~~~~~~p~~  320 (626)
                      ........ ...+.....+|.+.|++++|+|++ +| ++++.|++|++||+.  +++++..+   .|...|.+++|+| +
T Consensus        83 ~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~  160 (450)
T 2vdu_B           83 SIKRTAAK-VPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-D  160 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-T
T ss_pred             cccccCcc-ccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-C
Confidence            00000000 011223445788899999999998 64 889999999999999  88888777   4778999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEE-----EeccCCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909          321 DNYFISGSIDGKVRIWGVCEKRVV-----DWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFH  392 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~~~-----~~~~~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~  392 (626)
                      +.+|++|+.+|.|++|++.++...     .+..|...|++++|+|+   +++|++|+.|+.|++||+.+.......    
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----  236 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW----  236 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE----
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee----
Confidence            999999999999999999876644     45678899999999999   999999999999999999877653321    


Q ss_pred             cccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce--eeeeec-----------------------CCCCCeEE
Q 006909          393 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGL-----------------------PKSGSQMS  447 (626)
Q Consensus       393 ~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~-----------------------~~~~~v~~  447 (626)
                        ...|...|++++|+ ++ .+|++++.|+.|++||+.+..  ..+...                       .....+..
T Consensus       237 --~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          237 --LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             --CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             --ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence              12345899999999 76 799999999999999987543  333211                       23457899


Q ss_pred             EEEcCCCCEEEEEe-CCccEEEEEC
Q 006909          448 ASFTTTGKHIISIG-DDCRVYVWNY  471 (626)
Q Consensus       448 ~~~sp~g~~l~s~s-~dg~I~iwd~  471 (626)
                      ++|+|++++|++++ .|+.|++|++
T Consensus       313 i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEe
Confidence            99999999999999 8999999999

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=4.4e-28  Score=255.64  Aligned_cols=240  Identities=24%  Similarity=0.451  Sum_probs=197.2

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      ....+.+.+|.+.|++++|  ++++|++|+.||+|++||+.+                                      
T Consensus       163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--------------------------------------  202 (435)
T 1p22_A          163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT--------------------------------------  202 (435)
T ss_dssp             CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--------------------------------------
T ss_pred             CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--------------------------------------
Confidence            3456678899999999999  788999999999999999987                                      


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeee---Eee-cCCCCeEEEEEeeCCCCEEEE
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL---NVF-DHHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~---~~~-~~~~~v~~~~~~p~~~~~l~s  326 (626)
                             ...+..+.+|...|.+++|++ +.+++|+.|++|++||+.++...   ..+ .|...|.+++|   +++++++
T Consensus       203 -------~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s  271 (435)
T 1p22_A          203 -------GEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVS  271 (435)
T ss_dssp             -------CCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEE
T ss_pred             -------CcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEE
Confidence                   344677789999999999975 59999999999999999887765   333 58899999999   5789999


Q ss_pred             EeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          327 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      |+.||.|++||+++++.+. +..|...|.++.+  +++++++|+.||.|++||+.++..... +      ..|...|+++
T Consensus       272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~-~------~~h~~~v~~~  342 (435)
T 1p22_A          272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-L------EGHEELVRCI  342 (435)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-E------CCCSSCEEEE
T ss_pred             EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE-E------eCCcCcEEEE
Confidence            9999999999999887654 5678899999988  478999999999999999998765322 2      2345789999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCcce---------eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      +|  ++ .++++++.||.|++||+....         .......|...|.+++|  ++++|++++.||.|++||+.+..
T Consensus       343 ~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          343 RF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred             Ee--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence            99  44 689999999999999965322         33334558889999999  78899999999999999998763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.4e-29  Score=252.51  Aligned_cols=235  Identities=13%  Similarity=0.131  Sum_probs=180.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909          184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  263 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (626)
                      .....+.+++++|++|+.||+|++||+.+++.                                             +..
T Consensus        39 ~~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~---------------------------------------------~~~   73 (343)
T 3lrv_A           39 ELNKSMYYDKWVCMCRCEDGALHFTQLKDSKT---------------------------------------------ITT   73 (343)
T ss_dssp             EECSSSSEEEEEEEEEEETTEEEEEEESSSSC---------------------------------------------EEE
T ss_pred             hhhhhhcCCCCEEEEECCCCcEEEEECCCCcE---------------------------------------------EEE
Confidence            33445567888999999999999999987432                                             233


Q ss_pred             eccCccceEEEEEcCCCeEEEEeCCCcEEEeccC---------CCeeeEee--cCCCCeEEEEEee-CCCCEEEEEeCCC
Q 006909          264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG---------CNQCLNVF--DHHNYVTCVQFNP-IDDNYFISGSIDG  331 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~---------~~~~~~~~--~~~~~v~~~~~~p-~~~~~l~s~s~dg  331 (626)
                      +.  ...|.++.|+|+  +++++.|++|++|+..         +++.+..+  .|...|.+++|+| .+++++++++.||
T Consensus        74 ~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg  149 (343)
T 3lrv_A           74 IT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG  149 (343)
T ss_dssp             EE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTC
T ss_pred             Ee--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC
Confidence            32  456777778887  9999999999999665         45545444  3667899999998 3578999999999


Q ss_pred             cEEEEeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          332 KVRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      +|++||+++++.....  .+...+.+++|+|+|.+|++|+.||.|++||+++.......+..     .|..+|++++|+|
T Consensus       150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~fs~  224 (343)
T 3lrv_A          150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-----DEEAKIKEVKFAD  224 (343)
T ss_dssp             CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----CTTSCEEEEEECT
T ss_pred             cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----cCCCCEEEEEEeC
Confidence            9999999998876543  45567999999999999999999999999999988754222222     2458999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcceeeeeecC---CCCCe--EEEEEcCCCCEEEEEeC-CccEEEEECCCC
Q 006909          410 DESQRIMITSEDSKLRILDGVDVIHKFKGLP---KSGSQ--MSASFTTTGKHIISIGD-DCRVYVWNYDEL  474 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~---~~~~v--~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~  474 (626)
                      ++ .+|++++ ++.|++||+++.........   +...+  .+++|+|+|++|++++. |+.|++|++...
T Consensus       225 ~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          225 NG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             TS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            97 7899988 55999999875432211111   22233  46999999999999998 999999999765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-27  Score=246.92  Aligned_cols=252  Identities=17%  Similarity=0.201  Sum_probs=192.8

Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC--CCeeeEeec-CCCCeEEEEEeeCC--CCEEEEEeCCCcE
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFD-HHNYVTCVQFNPID--DNYFISGSIDGKV  333 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~--~~~~~~~~~-~~~~v~~~~~~p~~--~~~l~s~s~dg~v  333 (626)
                      ++..+.+|...|++++|+|++ +|++|+.|+.|++||+.  +++.+..+. |...|++++|+| +  +++|++|+.||.|
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKV   81 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEE
Confidence            467788999999999999998 89999999999999998  556666664 899999999987 5  8999999999999


Q ss_pred             EEEeCCCCe---EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          334 RIWGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       334 ~iwd~~~~~---~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      ++||+.+++   ......|...|.+++|+|+  +++|++++.||.|++||+......... ..    ..|...|++++|+
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~----~~~~~~v~~~~~~  156 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-II----DAHAIGVNSASWA  156 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE-EE----ECCTTCEEEEEEC
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE-Ee----cCCCCceEEEEEc
Confidence            999999875   4456678999999999999  999999999999999999877543221 11    2235789999999


Q ss_pred             C-------------CCCcEEEEEeCCCcEEEEeCCcce----eeeeecCCCCCeEEEEEcCC---CCEEEEEeCCccEEE
Q 006909          409 R-------------DESQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYV  468 (626)
Q Consensus       409 ~-------------~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~---g~~l~s~s~dg~I~i  468 (626)
                      |             ++ .++++++.|+.|++||+....    .......|...|.+++|+|+   +++|++++.||.|++
T Consensus       157 ~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          157 PATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             CCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             CccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence            9             45 799999999999999975322    22233458899999999999   899999999999999


Q ss_pred             EECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccc
Q 006909          469 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  526 (626)
Q Consensus       469 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~  526 (626)
                      ||+.++..+......     ......+.+.+++|+|++..++..+.+   +.+.+|+.
T Consensus       236 wd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~d---g~i~iw~~  285 (379)
T 3jrp_A          236 WTQDNEQGPWKKTLL-----KEEKFPDVLWRASWSLSGNVLALSGGD---NKVTLWKE  285 (379)
T ss_dssp             EEESSTTSCCEEEES-----SSSCCSSCEEEEEECSSSCCEEEEESS---SSEEEEEE
T ss_pred             EeCCCCCccceeeee-----ccccCCCcEEEEEEcCCCCEEEEecCC---CcEEEEeC
Confidence            999875321111000     001123445566666666666554443   33455554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-28  Score=256.26  Aligned_cols=228  Identities=13%  Similarity=0.155  Sum_probs=182.3

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      +.+.+|.+.|++++|+|+|       .++.+.+|+...                                          
T Consensus        46 ~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~------------------------------------------   76 (588)
T 2j04_A           46 KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ------------------------------------------   76 (588)
T ss_dssp             SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS------------------------------------------
T ss_pred             ceecCCCccEEEEEECCCC-------CcceEEEEeCCC------------------------------------------
Confidence            4557999999999999998       455555554332                                          


Q ss_pred             cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCC-----CeEEEEEeeCCCCEEEEEe
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~s~s  328 (626)
                          .....+ +|...|.+++|+|+| .|++++.||+|++||..+  ++..+.|..     .|.+++|+| ++++|++|+
T Consensus        77 ----~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~~LAsgs  148 (588)
T 2j04_A           77 ----NGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IESSIVVGN  148 (588)
T ss_dssp             ----SCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSSCEEEEE
T ss_pred             ----ceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCCEEEEEc
Confidence                111222 457899999999998 899999999999999654  666655444     499999999 999999999


Q ss_pred             CCCcEEEEeCCCCeE--------EEe----ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee--eEEeeccc
Q 006909          329 IDGKVRIWGVCEKRV--------VDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL--EKVDFHDR  394 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~--------~~~----~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~~~~  394 (626)
                      .||+|++||+.++.+        ..+    .+|...|.+++|+|+|  +++++.|+++++||+.+.....  ..+.    
T Consensus       149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~----  222 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ----  222 (588)
T ss_dssp             TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE----
T ss_pred             CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec----
Confidence            999999999998752        333    5677899999999999  8889999999999998876421  1121    


Q ss_pred             cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-eeeecCCCCCeEEEEE--cCCCCEEEEEeCCccEEEEEC
Q 006909          395 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       395 ~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~--sp~g~~l~s~s~dg~I~iwd~  471 (626)
                       ..|...|.+++|+  | +.+++++ +++|++||...... .+. .+|...+..++|  +|++..|++++.||+ ++|..
T Consensus       223 -~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          223 -NASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             -CCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             -ccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence             1234789999999  4 5888887 69999999886665 444 358999999999  999999999999999 99997


Q ss_pred             C
Q 006909          472 D  472 (626)
Q Consensus       472 ~  472 (626)
                      +
T Consensus       296 d  296 (588)
T 2j04_A          296 D  296 (588)
T ss_dssp             S
T ss_pred             c
Confidence            5

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=3.1e-28  Score=249.78  Aligned_cols=301  Identities=13%  Similarity=0.145  Sum_probs=225.7

Q ss_pred             CCCceeeccCccceEEEEEcCC---C-eEEEEeCCCcEEEeccCC-Ceee-Eee-cCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909          258 ESPLQELHGHKGDVLDLAWSNS---N-YLLSCSMDKTVRMWQVGC-NQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSID  330 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~---~-~l~s~s~d~~v~iwd~~~-~~~~-~~~-~~~~~v~~~~~~p~~~~~l~s~s~d  330 (626)
                      ...+..+.+|.+.|++++|+|+   + +|++|+.|+.|++||+.+ +..+ ..+ .|...|++++|+| ++++|++++.|
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d  107 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCD  107 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETT
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCC
Confidence            4556778899999999999998   4 899999999999999987 5554 444 5999999999999 99999999999


Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEEEEE--eeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISAICY--IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~--sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      |.|++||+.+++......|...|.+++|  +|++++|++++.||.|++||+++.+.... +..+       ..+.++.+.
T Consensus       108 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~-------~~~~~~~~~  179 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV-LQLP-------ERCYCADVI  179 (368)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE-EECS-------SCEEEEEEE
T ss_pred             CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE-EecC-------CCceEEEec
Confidence            9999999999999999999999999999  88999999999999999999988765332 2222       467777777


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeeeee--cCCCCCeEEEEEcCCCCE----EEEEeCCccEEEEECCCCCCCCCCcc
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKH----IISIGDDCRVYVWNYDELCFPSSKQK  482 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~----l~s~s~dg~I~iwd~~~~~~~~~~~~  482 (626)
                      ++   .+++++.++.+.+|+.......+..  ......+..+++.++...    +++++.|+.|++|++......     
T Consensus       180 ~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-----  251 (368)
T 3mmy_A          180 YP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-----  251 (368)
T ss_dssp             TT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH-----
T ss_pred             CC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc-----
Confidence            54   7888999999999998754433332  223455666666665554    999999999999999864110     


Q ss_pred             CCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCC
Q 006909          483 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKL  562 (626)
Q Consensus       483 ~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i  562 (626)
                      .   ....+...  .       ..                     ........+...+.+++|+|||+++++++. |+.|
T Consensus       252 ~---~~~~~~~~--~-------~~---------------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i  297 (368)
T 3mmy_A          252 K---DNFTFKCH--R-------SN---------------------GTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRF  297 (368)
T ss_dssp             H---HSEEEECS--E-------EC-------------------------CCCEEECCEEEEEECTTTCCEEEEET-TSCE
T ss_pred             c---cceeeeee--e-------cc---------------------cccccccccccceEEEEEecCCCEEEEEcc-CCeE
Confidence            0   00000000  0       00                     000001223345888999999999999988 7999


Q ss_pred             CCCCcccCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeecC
Q 006909          563 PLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYG  621 (626)
Q Consensus       563 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~g  621 (626)
                      ++||+.++           .+......+...+  .++++ +|.+|++||.|+..+.|+.+.
T Consensus       298 ~iwd~~~~-----------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          298 SFWDKDAR-----------TKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             EEEETTTT-----------EEEEECCCCSSCEEEEEECT-TSSCEEEEECCCSTTCGGGCC
T ss_pred             EEEECCCC-----------cEEEEecCCCCCceEEEECC-CCCeEEEEecccccccccccC
Confidence            99999987           2223333344333  35556 899999999999888887664

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=2.1e-28  Score=254.32  Aligned_cols=254  Identities=15%  Similarity=0.149  Sum_probs=175.9

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .+|.+.+....+++++.+||+|+.|++|+|||+.++....                                        
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~----------------------------------------  125 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT----------------------------------------  125 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEE----------------------------------------
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce----------------------------------------
Confidence            3577777777888889999999999999999998743221                                        


Q ss_pred             CCCceeeccCccceEEEEEcC--------CC-eEEEEeCCCcEEEeccCCCeeeE-eecCCCCeEEEEEeeCCCCEEEEE
Q 006909          258 ESPLQELHGHKGDVLDLAWSN--------SN-YLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~--------~~-~l~s~s~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                      ..++..+.||.+.|++++|+|        ++ +|++|+.|++|+|||+.++.++. .+.|..+|.+++|+|.+.++|++|
T Consensus       126 ~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  205 (393)
T 4gq1_A          126 QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG  205 (393)
T ss_dssp             EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred             eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec
Confidence            123456789999999999987        55 89999999999999998776554 557999999999999334689999


Q ss_pred             eCCCcEEEEeCCCCeEEE--------------------------eccCCCCeEEEEEe-eCCCEEEEEecCCcEEEEEcC
Q 006909          328 SIDGKVRIWGVCEKRVVD--------------------------WADVRDVISAICYI-PDGKGFIVGSITGTCHFYKAS  380 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~--------------------------~~~~~~~i~~i~~s-p~g~~l~~g~~dg~i~i~d~~  380 (626)
                      +.|++|++||+++++...                          ..+|...+.++.|+ |+++.+++++.|+++++||+.
T Consensus       206 ~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          206 ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF  285 (393)
T ss_dssp             ETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred             CCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence            999999999998765321                          23466778899987 799999999999999999997


Q ss_pred             CCceeeeEEeecc-----------ccccCCCCeEEEEEcC-CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEE
Q 006909          381 GNDLKLEKVDFHD-----------RKKTSGNKITGIQFSR-DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSA  448 (626)
Q Consensus       381 ~~~~~~~~~~~~~-----------~~~~~~~~i~~l~~s~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  448 (626)
                      .............           .............|+| .+..++++|+.||.|++||..+.........|..+|.++
T Consensus       286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sv  365 (393)
T 4gq1_A          286 ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDF  365 (393)
T ss_dssp             ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred             cCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEE
Confidence            6543221100000           0000011222333444 333567778899999999987654444444477899999


Q ss_pred             EEcCCCCEEEEEeCCccEEEEECC
Q 006909          449 SFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       449 ~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      +|+|||++||+++++| +.+|.+.
T Consensus       366 afspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          366 CWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEcCCCCEEEEEeCCC-eEEEEEe
Confidence            9999999999999766 6666654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.2e-25  Score=233.32  Aligned_cols=252  Identities=11%  Similarity=0.082  Sum_probs=193.1

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEE
Q 006909          194 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  273 (626)
Q Consensus       194 ~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  273 (626)
                      .++++++.|+.|++||+.++                                             +.+..+.+|. .+.+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~---------------------------------------------~~~~~~~~~~-~~~~   36 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN---------------------------------------------KVTATIPVGS-NPMG   36 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT---------------------------------------------EEEEEEECSS-SEEE
T ss_pred             EEEEEcCCCCEEEEEECCCC---------------------------------------------eEEEEeecCC-Ccce
Confidence            46888999999999999873                                             3344555554 5899


Q ss_pred             EEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEeCCCcEEEEeCCCCeEEEeccCC
Q 006909          274 LAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEKRVVDWADVR  350 (626)
Q Consensus       274 l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~  350 (626)
                      ++|+|++ ++ ++++.|++|++||+.+++.+..+.+...+.+++|+| ++++++ +++.++.|++||+.+++......+.
T Consensus        37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~  115 (391)
T 1l0q_A           37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG  115 (391)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC
Confidence            9999998 45 677799999999999999999998777999999999 888775 5556799999999999988877777


Q ss_pred             CCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909          351 DVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~  429 (626)
                      ..+.+++|+|+++.+ ++++.++.|++||+.+.+.... +..       ...+.+++|+|++..++++++.++.|++||+
T Consensus       116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~-------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~  187 (391)
T 1l0q_A          116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT-VSV-------GRSPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EEC-------CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-Eec-------CCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            889999999999987 6777899999999987765322 221       1567999999998544477888999999998


Q ss_pred             CcceeeeeecCCCCCeEEEEEcCCCCEEEEEe---CCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEe
Q 006909          430 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIG---DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ  501 (626)
Q Consensus       430 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~  501 (626)
                      .+........ +...+.+++|+|++++|++++   .++.|++||+.++.............++.|+|+|..+.++
T Consensus       188 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s  261 (391)
T 1l0q_A          188 VTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA  261 (391)
T ss_dssp             TTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE
T ss_pred             CCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEE
Confidence            7654333322 456789999999999999888   6899999999876322111111122344555555554333

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.2e-26  Score=261.49  Aligned_cols=207  Identities=18%  Similarity=0.263  Sum_probs=171.7

Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC--CCeeeEee-cCCCCeEEEEEeeCC--CCEEEEEeCCCcEEE
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVF-DHHNYVTCVQFNPID--DNYFISGSIDGKVRI  335 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~--~~~~~~~~-~~~~~v~~~~~~p~~--~~~l~s~s~dg~v~i  335 (626)
                      ..+.+|.+.|++++|+|++ +|++|+.||+|++||+.  +++.+..+ .|...|++++|+| +  +++|++|+.||+|++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEE
Confidence            4677999999999999987 89999999999999998  45666666 4999999999998 6  899999999999999


Q ss_pred             EeCCCCe---EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          336 WGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       336 wd~~~~~---~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      ||+.+++   ......|...|++++|+|+  ++.+++|+.||.|++||+.+........ .    ..|...|++++|+|.
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~-~----~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-I----DAHAIGVNSASWAPA  156 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE-E----ECCSSCEEEEEECCC
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE-e----ecCCCceEEEEecCc
Confidence            9999875   4456779999999999999  9999999999999999998774332211 1    223578999999994


Q ss_pred             ------------CCcEEEEEeCCCcEEEEeCCcc----eeeeeecCCCCCeEEEEEcCC---CCEEEEEeCCccEEEEEC
Q 006909          411 ------------ESQRIMITSEDSKLRILDGVDV----IHKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       411 ------------~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~---g~~l~s~s~dg~I~iwd~  471 (626)
                                  ++.++++++.||.|++||+...    ........|...|.+++|+|+   +++|++++.||.|++||+
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence                        1379999999999999997643    222333558899999999999   999999999999999999


Q ss_pred             CCC
Q 006909          472 DEL  474 (626)
Q Consensus       472 ~~~  474 (626)
                      .++
T Consensus       237 ~~~  239 (753)
T 3jro_A          237 DNE  239 (753)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            886

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=5.3e-26  Score=239.34  Aligned_cols=275  Identities=13%  Similarity=0.068  Sum_probs=210.8

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      .+..| ..+.+++|+|++.++++++.|+.|++||+.+++...                                      
T Consensus       118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~--------------------------------------  158 (433)
T 3bws_A          118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR--------------------------------------  158 (433)
T ss_dssp             EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE--------------------------------------
T ss_pred             EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee--------------------------------------
Confidence            34444 446699999988888888889999999998753321                                      


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEE-EEeCCCc
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI-SGSIDGK  332 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~-s~s~dg~  332 (626)
                        ..+...+.+|...|.+++|++++ .+++++.|+.|++||+.+++.+..+. |...+.+++|+| +++.++ +++.|+.
T Consensus       159 --~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~  235 (433)
T 3bws_A          159 --LSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISED  235 (433)
T ss_dssp             --ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTE
T ss_pred             --ecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCc
Confidence              01122456899999999999988 78899999999999999998888875 788999999999 888775 5557999


Q ss_pred             EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe--------cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909          333 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      |++||+++++..........+.+++|+|+|+.+++++        .||.|++||+.+.+.... ...       ...+.+
T Consensus       236 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~-------~~~~~~  307 (433)
T 3bws_A          236 ISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGP-------PGNKRH  307 (433)
T ss_dssp             EEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEE-------EECEEE
T ss_pred             EEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccC-------CCCcce
Confidence            9999999998887777777899999999999999988        488999999987754322 211       246889


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC---------------CccEEEE
Q 006909          405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---------------DCRVYVW  469 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~---------------dg~I~iw  469 (626)
                      ++|+|++..++++++.++.|++||..+....... .+...+.+++|+|+|++|++++.               ||.|++|
T Consensus       308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~  386 (433)
T 3bws_A          308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI  386 (433)
T ss_dssp             EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred             EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence            9999998556677799999999998754433332 25678999999999999998876               5799999


Q ss_pred             ECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccc
Q 006909          470 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL  512 (626)
Q Consensus       470 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~  512 (626)
                      |+.++.....           +.......+++|+|++..++..
T Consensus       387 d~~~~~~~~~-----------~~~~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          387 DTTTDTVKEF-----------WEAGNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             ETTTTEEEEE-----------EECSSSEEEEEECTTSCEEEEE
T ss_pred             ECCCCcEEEE-----------ecCCCCCceEEEcCCCCEEEEE
Confidence            9987632111           1112334566666666665543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.3e-26  Score=240.85  Aligned_cols=248  Identities=13%  Similarity=0.061  Sum_probs=193.0

Q ss_pred             ccccccCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcC--CCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~L-atgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ...+|.+.|++++|+|+|++| |+|+.||.|+|||+.  ++                                       
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~---------------------------------------  137 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK---------------------------------------  137 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS---------------------------------------
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC---------------------------------------
Confidence            445899999999999999996 899999999999998  52                                       


Q ss_pred             cccccCCCceeec--cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE----ee-cCCCCeEEEEEeeCC---C
Q 006909          253 VFQIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN----VF-DHHNYVTCVQFNPID---D  321 (626)
Q Consensus       253 ~~~~~~~~~~~~~--~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~----~~-~~~~~v~~~~~~p~~---~  321 (626)
                            ..+..+.  .|...|.+++|+|++ +|++++.++.|++|++.++....    .+ .|...|++++|+| +   +
T Consensus       138 ------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~  210 (450)
T 2vdu_B          138 ------NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGH  210 (450)
T ss_dssp             ------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSC
T ss_pred             ------ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCC
Confidence                  2344444  577899999999998 89999999999999998877553    33 5889999999999 8   8


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEE--eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc-----
Q 006909          322 NYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-----  394 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-----  394 (626)
                      .+|++|+.|++|++||+.++....  ..+|...|.+++|+ ++++|++++.|+.|++||+.+++.... +.....     
T Consensus       211 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~  288 (450)
T 2vdu_B          211 QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST-FDYNSLIKPYL  288 (450)
T ss_dssp             EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE-EECHHHHGGGC
T ss_pred             cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee-ecchhhhhhhh
Confidence            899999999999999999877553  44789999999999 999999999999999999998775432 221100     


Q ss_pred             --------------cccCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEeC--Ccc---eeeeeecCCCCCeEEEEEcCCC
Q 006909          395 --------------KKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDG--VDV---IHKFKGLPKSGSQMSASFTTTG  454 (626)
Q Consensus       395 --------------~~~~~~~i~~l~~s~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~sp~g  454 (626)
                                    .......|.+++|+|++ .++++++ .++.|++|++  ...   ........+ ..|.+++|+|++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~  366 (450)
T 2vdu_B          289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE  366 (450)
T ss_dssp             CTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred             hhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence                          00224679999999997 6788887 8999999998  322   222222224 789999999965


Q ss_pred             CEEEEEeC------CccEEEEECCC
Q 006909          455 KHIISIGD------DCRVYVWNYDE  473 (626)
Q Consensus       455 ~~l~s~s~------dg~I~iwd~~~  473 (626)
                      .++++++.      +..|.+|.+..
T Consensus       367 ~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          367 FQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEEEecccCCCCCCcceEEEEEEc
Confidence            44433332      45588887754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=3e-26  Score=234.66  Aligned_cols=197  Identities=11%  Similarity=0.106  Sum_probs=144.4

Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEE-EEEeCCCcEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSIDGKVRIW  336 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~s~dg~v~iw  336 (626)
                      .++..+.+|...|++++|+|++ +|++|+.+ .+++||+.+++......+. .+..+++.+ +++.+ ++++.|++|++|
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLH-RTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECT-TSSEEEEECSSTTEEEEE
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcC-CCCEEEEEECCccEEEEE
Confidence            4566678899999999999998 66666655 5899999988776655433 477888888 66666 567788999999


Q ss_pred             eCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC-ceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          337 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       337 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      |+.+++.+....+...|.+++++++.  ++++ .++.|++||+.+. +.. ..+..         +...+++++   .++
T Consensus        87 d~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~-~~~~~---------~~~~~~~s~---~~l  150 (355)
T 3vu4_A           87 DDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRI-TDDIR---------FGGVCEFSN---GLL  150 (355)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBS-SCCEE---------EEEEEEEET---TEE
T ss_pred             ECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceee-EEecc---------CCceEEEEc---cEE
Confidence            99999988877788899999998864  4443 4889999999887 332 21111         233456666   245


Q ss_pred             EE--EeCCCcEEEEeCCcce----------------eeeeecCCCCCeEEEEEcCCCCEEEEEeCCcc-EEEEECCCC
Q 006909          416 MI--TSEDSKLRILDGVDVI----------------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR-VYVWNYDEL  474 (626)
Q Consensus       416 ~~--~s~dg~i~iwd~~~~~----------------~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~-I~iwd~~~~  474 (626)
                      ++  ++.||.|++||+....                .......|...|.+++|+|+|++|++|+.|++ |++||+.++
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG  228 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            55  6889999999987532                02333458999999999999999999999998 999999875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.95  E-value=3.3e-26  Score=235.19  Aligned_cols=198  Identities=15%  Similarity=0.163  Sum_probs=160.4

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      ..+...+.+++|||||++||+|+  .|++|+|||+.++                                          
T Consensus       130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~------------------------------------------  167 (365)
T 4h5i_A          130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL------------------------------------------  167 (365)
T ss_dssp             CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT------------------------------------------
T ss_pred             CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC------------------------------------------
Confidence            35667799999999999887554  7899999999873                                          


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                         .++..+ .|...|.+++|+|++ +|++++ ++.+++|+..++..+...   .|...|.+++|+| ++.++++++.|+
T Consensus       168 ---~~~~~~-~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~  241 (365)
T 4h5i_A          168 ---TEKFEI-ETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKK  241 (365)
T ss_dssp             ---EEEEEE-ECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESS
T ss_pred             ---cEEEEe-CCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCC
Confidence               223444 377889999999998 666666 455677777666655432   4788999999999 999999999887


Q ss_pred             ----cEEEEeCCCCeE-----EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          332 ----KVRIWGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       332 ----~v~iwd~~~~~~-----~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                          .+++|++.....     .....|...|++++|+|+|++||+|+.|++|+|||+.+.+.....      ...|...|
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~------~~gH~~~V  315 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF------KQAHSFAI  315 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE------TTSSSSCE
T ss_pred             cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe------cCcccCCE
Confidence                688898876543     345678899999999999999999999999999999987653321      23456899


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRILDGV  430 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~  430 (626)
                      ++++|+||| ++|++++.|++|+|||+.
T Consensus       316 ~~v~fSpdg-~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          316 TEVTISPDS-TYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEEECTTS-CEEEEEETTSEEEEEECC
T ss_pred             EEEEECCCC-CEEEEEeCCCeEEEEEcC
Confidence            999999998 799999999999999975

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=1.4e-25  Score=236.15  Aligned_cols=255  Identities=13%  Similarity=0.149  Sum_probs=189.8

Q ss_pred             eeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCC----------CeeeEee-cCCCCeEEEEEeeCCCC-EEEEE
Q 006909          262 QELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC----------NQCLNVF-DHHNYVTCVQFNPIDDN-YFISG  327 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~----------~~~~~~~-~~~~~v~~~~~~p~~~~-~l~s~  327 (626)
                      ....+|.+.|++++|+|+ + +|++++.||.|++||+.+          ...+..+ .|...|.+++|+| ++. +|++|
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~  200 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSA  200 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEE
Confidence            445679999999999997 4 899999999999999976          4555555 5889999999999 666 99999


Q ss_pred             eCCCcEEEEeCCCCe--------EEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCc--eeeeEEeeccccc
Q 006909          328 SIDGKVRIWGVCEKR--------VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGND--LKLEKVDFHDRKK  396 (626)
Q Consensus       328 s~dg~v~iwd~~~~~--------~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~~~~~~  396 (626)
                      +.||.|++||+..+.        ...+..|...|.+++|+| ++..|++++.||.|++||++...  .....+.      
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~------  274 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD------  274 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE------
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee------
Confidence            999999999998732        234568889999999999 77899999999999999998763  2222222      


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCC
Q 006909          397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~  474 (626)
                      .|...|++++|+|++..++++++.||.|++||++.. ........|...|.+++|+|+++ +|++++.|+.|+|||+...
T Consensus       275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            345789999999998668999999999999998752 22222334788999999999995 6999999999999999873


Q ss_pred             CCCCCC---ccCCccceee-eccCCcEEEEecCCCCc-ccccccCCCccccCccccc
Q 006909          475 CFPSSK---QKNSVRSCEH-FFSEGVSVAVQWPGIGT-EQKSLCSSSLRDCSQKWDN  526 (626)
Q Consensus       475 ~~~~~~---~~~~~~~~~~-~~~~g~~~av~~s~~~~-~l~~~~~~~~~~~~~~w~~  526 (626)
                      ......   .......... -.+.+.+..++|+|++. .+++.+.+   +.+.+|+.
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d---g~i~iw~~  408 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED---NIMQVWQM  408 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT---SEEEEEEE
T ss_pred             ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC---CCEEEeEc
Confidence            211100   0000001111 12244577888888887 44444433   34566665

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=2.3e-26  Score=238.97  Aligned_cols=208  Identities=14%  Similarity=0.120  Sum_probs=141.8

Q ss_pred             cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe-----e-cCCCCeEEEEEee-------CCCCEEEEEeCCC
Q 006909          266 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-----F-DHHNYVTCVQFNP-------IDDNYFISGSIDG  331 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~-----~-~~~~~v~~~~~~p-------~~~~~l~s~s~dg  331 (626)
                      .|...+....+.+++ +|++++.|++|+|||+.++.....     + +|.+.|++++|+|       .++++|++|+.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            444455545555555 799999999999999998876542     2 4999999999987       2678999999999


Q ss_pred             cEEEEeCCCC-eEEEeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeec-----------------
Q 006909          332 KVRIWGVCEK-RVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFH-----------------  392 (626)
Q Consensus       332 ~v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-----------------  392 (626)
                      +|+|||+.++ .+.....|...+.+++|+|++. +|++|+.||+|++||+.+...........                 
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            9999999765 4566788999999999999874 79999999999999998765433211100                 


Q ss_pred             -cccccCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCC------------------CCeEEEEEcC
Q 006909          393 -DRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS------------------GSQMSASFTT  452 (626)
Q Consensus       393 -~~~~~~~~~i~~l~~s-~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------------------~~v~~~~~sp  452 (626)
                       .....+...+.++.|+ |++ ..+++++.|+++++||+...........+.                  .......|+|
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             -----CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence             0112456788899987 676 799999999999999975322111111111                  1222334444


Q ss_pred             --CCCEEEEEeCCccEEEEECCCC
Q 006909          453 --TGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       453 --~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                        ++.++++|+.||+|++||+.++
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~~~~  349 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINTYEK  349 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEETTCT
T ss_pred             CCCCEEEEEECCCCEEEEEECCCC
Confidence              4457788889999999999876

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=1.2e-24  Score=225.64  Aligned_cols=244  Identities=14%  Similarity=0.132  Sum_probs=194.3

Q ss_pred             cccccccccCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~L-atgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      ..+.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++                                     
T Consensus        24 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------------------------------------   65 (391)
T 1l0q_A           24 VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------------------------------------   65 (391)
T ss_dssp             EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------------------------------------
T ss_pred             EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe-------------------------------------
Confidence            344555565 48999999999977 677789999999998732                                     


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC-eEE-EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEE-EEEe
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGS  328 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~s  328 (626)
                              .+..+..|. .+.+++|+|++ +|+ +++.++.|++||+.+++.+..+.+...+.+++|+| +++.+ ++++
T Consensus        66 --------~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~  135 (391)
T 1l0q_A           66 --------VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNN  135 (391)
T ss_dssp             --------EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEET
T ss_pred             --------EEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeC
Confidence                    234444444 89999999987 554 55577999999999999999888888899999999 88876 7888


Q ss_pred             CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909          329 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  407 (626)
                      .++.|++||+.+++..........+.+++|+|+++.+ ++++.++.|++||+.+..... .+.       +...+.+++|
T Consensus       136 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~-------~~~~~~~~~~  207 (391)
T 1l0q_A          136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-TVK-------VEAAPSGIAV  207 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEE-------CSSEEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE-EEe-------cCCCccceEE
Confidence            8999999999999888777767788999999999988 567788999999998875432 221       1257899999


Q ss_pred             cCCCCcEEEEEe---CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEE-EEEeCCccEEEEECCCC
Q 006909          408 SRDESQRIMITS---EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       408 s~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~s~s~dg~I~iwd~~~~  474 (626)
                      +|++ .++++++   .++.|++||+.+......... ...+.+++|+|++++| ++++.|+.|++||+.++
T Consensus       208 ~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          208 NPEG-TKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             CTTS-SEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCC-CEEEEEecCcCCCcEEEEECCCCeEEEEEec-CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            9998 5677666   789999999875543333322 3457899999999988 56788999999999876

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=7.9e-25  Score=230.35  Aligned_cols=242  Identities=10%  Similarity=0.077  Sum_probs=201.0

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      .+.+|.+.|++++|+|+++++++++.|+.|++||+.+                                           
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-------------------------------------------  200 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-------------------------------------------  200 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-------------------------------------------
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-------------------------------------------
Confidence            4668999999999999999999999999999999986                                           


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe-----
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-----  328 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-----  328 (626)
                        ...+..+..|...+.+++|+|++ .+ ++++.|+.|++||+.+++.+..+.+...+.+++|+| +++++++++     
T Consensus       201 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~  277 (433)
T 3bws_A          201 --LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASN  277 (433)
T ss_dssp             --CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCT
T ss_pred             --ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCc
Confidence              33456667888999999999987 55 455689999999999999998888778899999999 999999888     


Q ss_pred             ---CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909          329 ---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       329 ---~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                         .|+.|++||+.+++......+...+.+++|+|+++.+ ++++.++.|++||+.+.+... .+.       +...+.+
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~-~~~-------~~~~~~~  349 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK-SIP-------VFDKPNT  349 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE-EEE-------CSSSEEE
T ss_pred             cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE-Eec-------CCCCCCe
Confidence               4889999999999888877777789999999999765 556889999999998765432 222       1367899


Q ss_pred             EEEcCCCCcEEEEEeC---------------CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEE
Q 006909          405 IQFSRDESQRIMITSE---------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYV  468 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~i  468 (626)
                      ++|+|+| .++++++.               ||.|++||..+........ ....+.+++|+|+|++|++++. |+.|++
T Consensus       350 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v  427 (433)
T 3bws_A          350 IALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRV  427 (433)
T ss_dssp             EEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred             EEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence            9999998 56777665               5799999987544333332 3457899999999999998875 999999


Q ss_pred             EECCC
Q 006909          469 WNYDE  473 (626)
Q Consensus       469 wd~~~  473 (626)
                      |++++
T Consensus       428 ~~~~~  432 (433)
T 3bws_A          428 YRRDG  432 (433)
T ss_dssp             EEETT
T ss_pred             EEecC
Confidence            99874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.2e-25  Score=229.22  Aligned_cols=242  Identities=10%  Similarity=0.069  Sum_probs=183.7

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc-CC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-ES  259 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  259 (626)
                      .+.|.++.|+|+   +++|+.|++|++|+......                                     +++.. ..
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~-------------------------------------~~~~~~~~  115 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQIT-------------------------------------ILDSKTNK  115 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTTEEEEEETTTEEE-------------------------------------EEETTTCC
T ss_pred             cCCceeeeeCCc---eEEecCCCeEEEEEccCceE-------------------------------------EeecCCcc
Confidence            456788888888   99999999999999875100                                     00111 11


Q ss_pred             Cceee-ccCccceEEEEEcC--CC-eEEEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          260 PLQEL-HGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       260 ~~~~~-~~h~~~V~~l~~s~--~~-~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                      .+..+ .+|...|.+++|+|  ++ ++++++.|++|++||+.+++++...  .+...|.+++|+| ++.+|++|+.||.|
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i  194 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGIL  194 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCE
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence            12333 36778999999999  77 8999999999999999999987766  3556899999999 99999999999999


Q ss_pred             EEEeCCCCeEE--Eecc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe--EEEEEc
Q 006909          334 RIWGVCEKRVV--DWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI--TGIQFS  408 (626)
Q Consensus       334 ~iwd~~~~~~~--~~~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~s  408 (626)
                      ++||+++++..  .+.. |...|++++|+|+|.+|++++ ++.|++||++..........+..    +...+  .+++|+
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  269 (343)
T 3lrv_A          195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI----PEFKTGTVTYDID  269 (343)
T ss_dssp             EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---------CCEEEEEC
T ss_pred             EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc----ccccccceEEEEC
Confidence            99999988755  5566 899999999999999999999 55999999988765322111110    11222  579999


Q ss_pred             CCCCcEEEEEeC-CCcEEEEeCCcceeeeeecCCCCCeEEEEEcC---CCCEEEEEeCCccEEEEECCC
Q 006909          409 RDESQRIMITSE-DSKLRILDGVDVIHKFKGLPKSGSQMSASFTT---TGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       409 ~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      |+| .+|++++. |+.|++|+..+....+..    .++..+.|++   +++.+++++.|+.+.++-...
T Consensus       270 ~~g-~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          270 DSG-KNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             TTS-SEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             CCC-CEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            998 78999888 999999997544333332    4567788888   889999999999999886543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=1.4e-24  Score=213.32  Aligned_cols=198  Identities=14%  Similarity=0.089  Sum_probs=141.5

Q ss_pred             cCccceEEEEEcCCCeEEEEe---CCCcEEEecc-CCCeeeEee-cCCCCeEEEEEeeC--CCCEEEEEeCCCcEEEEeC
Q 006909          266 GHKGDVLDLAWSNSNYLLSCS---MDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~~l~s~s---~d~~v~iwd~-~~~~~~~~~-~~~~~v~~~~~~p~--~~~~l~s~s~dg~v~iwd~  338 (626)
                      +|...|..+   +++.+++++   .|+.|++|++ .+++.+..+ .|...++.++|+|.  ++.+|++|+.|++|+|||+
T Consensus       134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl  210 (356)
T 2w18_A          134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL  210 (356)
T ss_dssp             EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred             CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence            455555554   567666654   4999999999 447776655 48888888888874  6699999999999999999


Q ss_pred             CCCeEEEec-cC---CCCeEEEEEeeCCCEE------------EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          339 CEKRVVDWA-DV---RDVISAICYIPDGKGF------------IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       339 ~~~~~~~~~-~~---~~~i~~i~~sp~g~~l------------~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      .+++.+... .+   ...+.+++|+|+|+++            ++|+.|++|++||..++..... ..... ..+|...+
T Consensus       211 ~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v-~~~~~-p~Gh~~~~  288 (356)
T 2w18_A          211 KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV-MLYCL-PPGQAGRF  288 (356)
T ss_dssp             TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE-EEECC-CTTCCCCE
T ss_pred             CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE-EEeec-cCCCccee
Confidence            999876644 33   3467888999999876            5678899999999988765422 11110 11223344


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeE-EEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      .+..++  + .++++++.|++|+|||+.+........+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus       289 lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          289 LEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            444444  4 5899999999999999886554444444655544 6899999999999999999999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=2.5e-24  Score=225.00  Aligned_cols=304  Identities=11%  Similarity=0.041  Sum_probs=207.9

Q ss_pred             cCcEEEEEEcCCCC-EEEEEe----CCC----cEEEEEc--CCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          181 KGCIWTLKFSPDGR-YLASGG----EDG----VVRIWHV--TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       181 ~~~V~~l~fspdg~-~Latgs----~Dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      ...|...+|++.|. ++++|+    .||    +|+|||+  .+++...                                
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~--------------------------------  109 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA--------------------------------  109 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE--------------------------------
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe--------------------------------
Confidence            34577778888775 666876    467    8999999  7643210                                


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcC---------------CCeEEEEeCC------CcEEEeccCCCeeeEeecCC
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSN---------------SNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH  308 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~---------------~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~~  308 (626)
                                 ...+.+|...+..+++++               ++.++.++.+      +.|++||+..+.......|.
T Consensus       110 -----------~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~  178 (415)
T 2hqs_A          110 -----------QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP  178 (415)
T ss_dssp             -----------EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES
T ss_pred             -----------eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC
Confidence                       134566776666666653               4466666654      79999999865555555688


Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCC---cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEE-EEecCCc--EEEEEcCCC
Q 006909          309 NYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGT--CHFYKASGN  382 (626)
Q Consensus       309 ~~v~~~~~~p~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~g~~dg~--i~i~d~~~~  382 (626)
                      ..+.+++|+| +++.|++++.++   .|++||+.+++...+..+...+.+++|+|+|+.|+ +++.++.  |++||+.++
T Consensus       179 ~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~  257 (415)
T 2hqs_A          179 QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  257 (415)
T ss_dssp             SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence            9999999999 999999999885   99999999999888888888999999999999888 5666654  999999876


Q ss_pred             ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC-CC--cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEE
Q 006909          383 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS  459 (626)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  459 (626)
                      ...  .+      ..+...+.+++|+|+| ++|++++. ++  .|++||....... ....+...+..++|+|+|++|++
T Consensus       258 ~~~--~l------~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~  327 (415)
T 2hqs_A          258 QIR--QV------TDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVM  327 (415)
T ss_dssp             CEE--EC------CCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEE
T ss_pred             CEE--eC------cCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEE
Confidence            542  11      1234679999999998 56776665 45  6777787654321 12225567889999999999998


Q ss_pred             EeCC---ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC-CCcccC
Q 006909          460 IGDD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWIRD  535 (626)
Q Consensus       460 ~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~~~  535 (626)
                      ++.+   ..|++||+.++......... ......|+|+|..++.+-..++           ...+..|+.... ...+..
T Consensus       328 ~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~-----------~~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          328 VSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGM-----------GSVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             EEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETT-----------EEEEEEEETTSCCEEECCC
T ss_pred             EECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCC-----------ccEEEEEECCCCcEEEeeC
Confidence            8764   68999999886332111111 2333445555554444332221           122333333211 123455


Q ss_pred             CCcccCCccccCCCC
Q 006909          536 SERFSLGSWFSNDGP  550 (626)
Q Consensus       536 ~~~~~~~~~~s~dg~  550 (626)
                      +...+.+++|+|.-.
T Consensus       396 ~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          396 TDGQVKFPAWSPYLH  410 (415)
T ss_dssp             SSSEEEEEEECCCCC
T ss_pred             CCCCCcCCccccccc
Confidence            666788889988754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=4.7e-24  Score=249.19  Aligned_cols=371  Identities=10%  Similarity=-0.014  Sum_probs=251.2

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      +.+.+|.+.+.++.|+++ .++++++.||.++||.+...                                         
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~-----------------------------------------  234 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD-----------------------------------------  234 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT-----------------------------------------
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC-----------------------------------------
Confidence            445789999999999998 67778888999999987531                                         


Q ss_pred             cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec------------CCCCeEEEEEe-eCC
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD------------HHNYVTCVQFN-PID  320 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~------------~~~~v~~~~~~-p~~  320 (626)
                         ......+..|. .+..++|+|+| .|+++ .++.|.+||+...... .+.            |...+.+++|+ | +
T Consensus       235 ---g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p-d  307 (1045)
T 1k32_A          235 ---GKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPL-D  307 (1045)
T ss_dssp             ---SCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEEC-G
T ss_pred             ---CCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCC-C
Confidence               12233444444 35677999998 56665 5899999999544433 332            23368999999 9 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEeccCCC-CeEEEEEeeCCCEEEEEecCCcEE-EEEcCCCceeeeEEeeccccccC
Q 006909          321 DNYFISGSIDGKVRIWGVCEKRVVDWADVRD-VISAICYIPDGKGFIVGSITGTCH-FYKASGNDLKLEKVDFHDRKKTS  398 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~i~~i~~sp~g~~l~~g~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~  398 (626)
                      ++.+++++ ++.|.+|++.++.......+.. .+..++|+ +|+.+++++.++.+. +|++.+.....  +.      .+
T Consensus       308 G~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~--l~------~~  377 (1045)
T 1k32_A          308 GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK--FE------EN  377 (1045)
T ss_dssp             GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE--CC------CC
T ss_pred             CCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE--ec------CC
Confidence            99998888 7899999999988887777777 89999999 999999999888888 88987764321  11      23


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC----------ccEEE
Q 006909          399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD----------CRVYV  468 (626)
Q Consensus       399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d----------g~I~i  468 (626)
                      ...+..++|+|+| ++|++++.++.|++||+.+.........|...+..++|+|||++|++++.+          +.|++
T Consensus       378 ~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l  456 (1045)
T 1k32_A          378 LGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  456 (1045)
T ss_dssp             CCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             ccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence            4689999999998 789999999999999987544333333477888999999999999988764          49999


Q ss_pred             EECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCc----------------cccC-----------
Q 006909          469 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL----------------RDCS-----------  521 (626)
Q Consensus       469 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~----------------~~~~-----------  521 (626)
                      ||+.++................|+|+|..++.....++...+.......                ....           
T Consensus       457 ~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (1045)
T 1k32_A          457 YDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE  536 (1045)
T ss_dssp             EETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCC
T ss_pred             EECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccc
Confidence            9998763221111222233456777777666554433322221110000                0000           


Q ss_pred             -ccccc--c-CCCCcccCCCcccCCccccCCCCcccc------------cCCCCCCCCCCCcccCCCCCCCChhhHHHHh
Q 006909          522 -QKWDN--L-ETAPWIRDSERFSLGSWFSNDGPCRGS------------ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQ  585 (626)
Q Consensus       522 -~~w~~--~-~~~~~~~~~~~~~~~~~~s~dg~~l~s------------~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  585 (626)
                       ..|+.  . .....+..+...+..++++|||+++++            .......|.+||+.++.           ...
T Consensus       537 ~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~-----------~~~  605 (1045)
T 1k32_A          537 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-----------VTE  605 (1045)
T ss_dssp             CCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-----------EEE
T ss_pred             cccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc-----------EEE
Confidence             00111  0 011122234445678899999986663            11112467778887762           111


Q ss_pred             hhccCCccccccccccceEEEEecCCceEeeeeec
Q 006909          586 QCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       586 ~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                      +.  ......++++ ||+.|++++.| .|++|+.-
T Consensus       606 l~--~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~  636 (1045)
T 1k32_A          606 VK--NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPL  636 (1045)
T ss_dssp             EE--EEEEEEEECT-TSCEEEEEETT-SCEEEEES
T ss_pred             ee--cCcceEEECC-CCCEEEEEcCC-cEEEEeCc
Confidence            11  1122345666 89999999877 79999974

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=1.3e-23  Score=219.58  Aligned_cols=264  Identities=12%  Similarity=0.108  Sum_probs=201.0

Q ss_pred             cccccccCcEEEEEEcC--------------CCCEEEEEeCC------CcEEEEEcCCCcceeeeecCCCCCccCCCCCe
Q 006909          175 QEIQAHKGCIWTLKFSP--------------DGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK  234 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fsp--------------dg~~Latgs~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  234 (626)
                      ..+.+|...+..+++++              .+..++.++.+      +.|++||+..                      
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----------------------  168 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG----------------------  168 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS----------------------
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC----------------------
Confidence            45677888887777765              25666666654      7999999864                      


Q ss_pred             eeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCC---cEEEeccCCCeeeEeecCCCC
Q 006909          235 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNY  310 (626)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~---~v~iwd~~~~~~~~~~~~~~~  310 (626)
                                              .....+.+|...|.+++|+|+| .|++++.++   .|++||+.+++......+...
T Consensus       169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~  224 (415)
T 2hqs_A          169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH  224 (415)
T ss_dssp             ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred             ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc
Confidence                                    2356677899999999999998 888888875   999999999988776678889


Q ss_pred             eEEEEEeeCCCCEEE-EEeCCCc--EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCce
Q 006909          311 VTCVQFNPIDDNYFI-SGSIDGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDL  384 (626)
Q Consensus       311 v~~~~~~p~~~~~l~-s~s~dg~--v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~  384 (626)
                      +.+++|+| +++.|+ +++.++.  |++||+.+++...+..+...+.+++|+|+|++|++++. ++  .|.+||+.++..
T Consensus       225 ~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~  303 (415)
T 2hqs_A          225 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  303 (415)
T ss_dssp             EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             ccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence            99999999 999877 6666654  99999999988888888899999999999999998886 45  677778877653


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909          385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      .  .+..      +...+.+++|+|+| ++|++++.+   ..|++||+.+..... ...+ ..+.+++|+|+|++|++++
T Consensus       304 ~--~l~~------~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~-~~~~~~~~spdg~~l~~~s  372 (415)
T 2hqs_A          304 Q--RITW------EGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQV-LSST-FLDETPSLAPNGTMVIYSS  372 (415)
T ss_dssp             E--ECCC------SSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCEEE-CCCS-SSCEEEEECTTSSEEEEEE
T ss_pred             E--EEec------CCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCEEE-ecCC-CCcCCeEEcCCCCEEEEEE
Confidence            2  1111      23578899999998 567666653   589999987543322 2223 3889999999999999988


Q ss_pred             CCc---cEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCc
Q 006909          462 DDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT  507 (626)
Q Consensus       462 ~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~  507 (626)
                      .++   .|++||+.+......           ..+++.+..++|+|-..
T Consensus       373 ~~~~~~~l~~~d~~g~~~~~l-----------~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          373 SQGMGSVLNLVSTDGRFKARL-----------PATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EETTEEEEEEEETTSCCEEEC-----------CCSSSEEEEEEECCCCC
T ss_pred             cCCCccEEEEEECCCCcEEEe-----------eCCCCCCcCCccccccc
Confidence            776   799999876421111           12346677888887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1.1e-23  Score=207.02  Aligned_cols=215  Identities=11%  Similarity=0.030  Sum_probs=151.9

Q ss_pred             ccCcEEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          180 HKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       180 H~~~V~~l~fspd----g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      |.+.|++++|+||    ++++++++.+  +++|++.+++........        .+..++++....             
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g--------~d~~V~~~~~s~-------------  166 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTL--------SDQQVEVMTFAE-------------  166 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSS--------TTCEEEEEEECT-------------
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccC--------CCCcEEEEEECC-------------
Confidence            5668999999999    8899998854  788888654432221110        122222221110             


Q ss_pred             ccCCCceeeccCccceEEEEEcC---CC-eEEEEeCCCcEEEeccCCCeeeEeec-C---CCCeEEEEEeeCCCCEE---
Q 006909          256 IEESPLQELHGHKGDVLDLAWSN---SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-H---HNYVTCVQFNPIDDNYF---  324 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~---~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~---~~~v~~~~~~p~~~~~l---  324 (626)
                       .++.+..+.+|...++.++|++   ++ .|++++.|++|+|||+.++++++++. |   ...+.+++|+| ++.++   
T Consensus       167 -dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~  244 (356)
T 2w18_A          167 -DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVL  244 (356)
T ss_dssp             -TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEE
T ss_pred             -CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEe
Confidence             1344567778999999999998   44 89999999999999999999999985 3   34688889999 88876   


Q ss_pred             ---------EEEeCCCcEEEEeCCCCeEEEec------cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEE
Q 006909          325 ---------ISGSIDGKVRIWGVCEKRVVDWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  389 (626)
Q Consensus       325 ---------~s~s~dg~v~iwd~~~~~~~~~~------~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~  389 (626)
                               ++|+.|++|++||..+++.+...      +|...+.  ..+.++..+++|+.|++|+|||+.+++.... +
T Consensus       245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L  321 (356)
T 2w18_A          245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-L  321 (356)
T ss_dssp             C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEE-E
T ss_pred             ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEE-e
Confidence                     56888999999999998876432      4444443  3344488999999999999999998876432 2


Q ss_pred             eeccccccCCC-CeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909          390 DFHDRKKTSGN-KITGIQFSRDESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       390 ~~~~~~~~~~~-~i~~l~~s~~~~~~l~~~s~dg~i~iwd~  429 (626)
                      .      .|.. .+..++|+|+| ++|++|+.|++|+|||.
T Consensus       322 ~------gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          322 P------PVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             C------CC--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred             c------CCCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence            1      1223 34568999998 79999999999999984

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=1.1e-22  Score=219.44  Aligned_cols=325  Identities=12%  Similarity=0.063  Sum_probs=220.7

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec-c
Q 006909          188 KFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-G  266 (626)
Q Consensus       188 ~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  266 (626)
                      +|+|++.++++++.|++|.+||..++                                             +.+.++. +
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~---------------------------------------------~~~~~i~~g  178 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSK---------------------------------------------KIVKVIDTG  178 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTC---------------------------------------------CEEEEEECS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCc---------------------------------------------eEEEEEecC
Confidence            37899999999999999999999873                                             3345555 3


Q ss_pred             CccceEEEEEcCCC-eEEEEeCCCcEEEecc--CCCeeeEeecCCCCeEEEEEeeC---CCCEEEEEe-CCCcEEEEeCC
Q 006909          267 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV--GCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGS-IDGKVRIWGVC  339 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~--~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~s-~dg~v~iwd~~  339 (626)
                      |.  +..++|+|++ +|++++.|++|.+||+  .+++++..+.+...+..++|+|.   +++++++++ .+++|.+||..
T Consensus       179 ~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          179 YA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             TT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             cc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence            43  8899999998 8999999999999999  88999988888888999999972   677888777 48999999999


Q ss_pred             CCeEEEeccC------------CCCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEE
Q 006909          340 EKRVVDWADV------------RDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       340 ~~~~~~~~~~------------~~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l  405 (626)
                      +++++.....            ...+.++.++|++..+ ++...++.|.+||+.+...... .+.       +...+.++
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-------~~~~~~~~  329 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-------AAPFLHDG  329 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-------CCSSCCCE
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-------cCcCccCc
Confidence            9887654322            2368899999977654 4566789999999987654321 111       13567889


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCccee--eeee--cCCCCCeEEEEEcCC-CCEEEEEe-CCccEEEEECCCCCCCCC
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDVIH--KFKG--LPKSGSQMSASFTTT-GKHIISIG-DDCRVYVWNYDELCFPSS  479 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~--~~~~~~v~~~~~sp~-g~~l~s~s-~dg~I~iwd~~~~~~~~~  479 (626)
                      .|+|+|..+++++..+++|.+||..+...  .+..  .+|.+....+ ++|+ +..++++. .|++|.+||+.+...+. 
T Consensus       330 ~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~-  407 (543)
T 1nir_A          330 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ-  407 (543)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT-
T ss_pred             eECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch-
Confidence            99999843445556789999999875433  3332  1244334333 4677 66667765 58999999998731110 


Q ss_pred             CccCCccceeeeccCCcEEEEecCCCCcccccccCCC----ccccCccccccCCCCc-----------ccCCCcccCCcc
Q 006909          480 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS----LRDCSQKWDNLETAPW-----------IRDSERFSLGSW  544 (626)
Q Consensus       480 ~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~----~~~~~~~w~~~~~~~~-----------~~~~~~~~~~~~  544 (626)
                       +...+...+..+. +..+.++++|++..||......    ....+.+|+.......           +..+...+..++
T Consensus       408 -~~~~~v~~l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  485 (543)
T 1nir_A          408 -YAWKKVAELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE  485 (543)
T ss_dssp             -TBTSEEEEEECSC-SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred             -hcCeEEEEEEcCC-CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence             0000111111111 2223455555555555433100    1234455554322111           123456788999


Q ss_pred             ccCCCCcccccCC----CCCCCCCCCcccC
Q 006909          545 FSNDGPCRGSATW----PAEKLPLWDVTID  570 (626)
Q Consensus       545 ~s~dg~~l~s~~~----~d~~i~vwd~~~~  570 (626)
                      |+|||+.+..+.|    .++.|.+||..++
T Consensus       486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~  515 (543)
T 1nir_A          486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTL  515 (543)
T ss_dssp             ECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence            9999998887654    2689999999998

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=4.2e-23  Score=232.80  Aligned_cols=342  Identities=10%  Similarity=0.049  Sum_probs=212.8

Q ss_pred             cCcEEEEEEcCCCCEEEEEeC-CC-----cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          181 KGCIWTLKFSPDGRYLASGGE-DG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~-Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      ...|++++|||||++|++++. |+     .|++||+.++............     ..+. .+                 
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-----~~~~-~~-----------------   92 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-----PGTE-TL-----------------   92 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-----cccc-cc-----------------
Confidence            557999999999999999998 88     8999999886543222110000     0000 00                 


Q ss_pred             cccCCCceeec--cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC---eeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909          255 QIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       255 ~~~~~~~~~~~--~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                      ..+....+...  .....|.+++|+|+| +|++++. +.|++||+.++   .......+...+.+++|+| ++++|++++
T Consensus        93 ~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~  170 (741)
T 2ecf_A           93 SDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR  170 (741)
T ss_dssp             --------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE
T ss_pred             cchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe
Confidence            00000000000  012457899999998 6777765 99999999988   6655556778899999999 999999987


Q ss_pred             CCCcEEEEeCCCCeEEEeccCCCC-----------------eEEEEEeeCCCEEEEEecCC-------------------
Q 006909          329 IDGKVRIWGVCEKRVVDWADVRDV-----------------ISAICYIPDGKGFIVGSITG-------------------  372 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~~~~~~~~-----------------i~~i~~sp~g~~l~~g~~dg-------------------  372 (626)
                       ++.|++||+.+++..........                 +.+++|+|||++|++++.|+                   
T Consensus       171 -~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          171 -GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             -TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred             -CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence             46899999999887765443222                 47899999999999988765                   


Q ss_pred             --------------cEEEEEcCC-CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC-----CCcEEEEeCCcc
Q 006909          373 --------------TCHFYKASG-NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-----DSKLRILDGVDV  432 (626)
Q Consensus       373 --------------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~-----dg~i~iwd~~~~  432 (626)
                                    .|.+||+.+ +....  +...   ..+...+..++| ||| ++|++++.     +..|++||..+.
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~--~~~~---~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g  322 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQTQW--IDLG---KEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASN  322 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCCEE--ECCC---SCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTC
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCceEE--ecCC---CCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCC
Confidence                          788889877 65322  1111   123467899999 998 56665543     568999997754


Q ss_pred             e--eeeeecCCCC---CeEEEEEcCCCCEEEEEeCCccEEEEECCC-CCC-CCCCccCCccceeeeccCCcEEEEecCCC
Q 006909          433 I--HKFKGLPKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYDE-LCF-PSSKQKNSVRSCEHFFSEGVSVAVQWPGI  505 (626)
Q Consensus       433 ~--~~~~~~~~~~---~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~g~~~av~~s~~  505 (626)
                      .  ..+... ...   .+..++|+|||+++++++.||.+.||.++. +.. ....+...+.....|+|+|..+++..+.+
T Consensus       323 ~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~  401 (741)
T 2ecf_A          323 QQRVLAHET-SPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIE  401 (741)
T ss_dssp             CEEEEEEEE-CSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred             ceEEEEEcC-CCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence            3  223222 112   446889999999999999999888887652 111 11111112222224566665544443333


Q ss_pred             C---cccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCC---CCCCCCCcc
Q 006909          506 G---TEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPA---EKLPLWDVT  568 (626)
Q Consensus       506 ~---~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d---~~i~vwd~~  568 (626)
                      +   ..+|.+..+..           ....+.. ...+..++|||||++++......   ..+.+|+..
T Consensus       402 ~~~~~~l~~~~~~g~-----------~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          402 SARESQIYAVPLQGG-----------QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             CTTCBEEEEEETTCC-----------CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             CCceEEEEEEEcCCC-----------Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence            2   23333322110           0011111 33456889999999876543211   245666553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=1.9e-23  Score=244.08  Aligned_cols=406  Identities=12%  Similarity=0.058  Sum_probs=234.4

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  247 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (626)
                      .+.|.+|.+.|.+++|||||++||+++.+      ..|++|++.++.......................+ ..... ...
T Consensus        45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~-SpDg~-ll~  122 (1045)
T 1k32_A           45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGF-DPDGN-LII  122 (1045)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEE-CTTCC-EEE
T ss_pred             EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccC-CCCCE-EEE
Confidence            45677899999999999999999988643      37999998875422111100000000000000011 11111 111


Q ss_pred             ecC-C-------cccc--ccCCCceeeccCccceEEEEEcCCCeEEEEeC------------CCcEEEeccCC-CeeeEe
Q 006909          248 VIP-D-------EVFQ--IEESPLQELHGHKGDVLDLAWSNSNYLLSCSM------------DKTVRMWQVGC-NQCLNV  304 (626)
Q Consensus       248 ~~~-~-------~~~~--~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~------------d~~v~iwd~~~-~~~~~~  304 (626)
                      ... .       .+|.  ........+..+  ....++|+| |.+++++.            +...++|.... ++....
T Consensus       123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~~~~~~sp-G~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l  199 (1045)
T 1k32_A          123 STDAMQPFSSMTCLYRVENDGINFVPLNLG--PATHILFAD-GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI  199 (1045)
T ss_dssp             EECTTSSSTTCCEEEEEEGGGTEEEECCSC--SCSEEEEET-TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred             EECCcCCCcccceEEEEECCCCCeEEecCC--CcceeeeCC-CEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence            100 0       1111  122222233322  223445555 44444331            12334443211 233333


Q ss_pred             ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC--CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC
Q 006909          305 FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  382 (626)
Q Consensus       305 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~  382 (626)
                      ..|...+.++.|++ + .++++++.++++.||.+.  ++....+..+. .+..++|+|+|+.++.+ .++.|.+|++...
T Consensus       200 ~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~  275 (1045)
T 1k32_A          200 VDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE  275 (1045)
T ss_dssp             ECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred             cCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce
Confidence            35777888999987 5 667778888988999754  44444444444 46678999999999887 5899999998443


Q ss_pred             ceeeeEEeecc-----ccccCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCC-CeEEEEEcCCCC
Q 006909          383 DLKLEKVDFHD-----RKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG-SQMSASFTTTGK  455 (626)
Q Consensus       383 ~~~~~~~~~~~-----~~~~~~~~i~~l~~s-~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~g~  455 (626)
                      ...  .+....     ....+...+.+++|+ |+| +++++++ ++.|.+|+....... ....+.. .+..++|+ +|+
T Consensus       276 ~l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~  349 (1045)
T 1k32_A          276 KIE--KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKV  349 (1045)
T ss_dssp             CEE--ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEE
T ss_pred             Eee--eeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCC
Confidence            322  111100     000123468999999 998 6777776 889999997644322 2233555 78999999 999


Q ss_pred             EEEEEeCCccEE-EEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCC--c
Q 006909          456 HIISIGDDCRVY-VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--W  532 (626)
Q Consensus       456 ~l~s~s~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~  532 (626)
                      .|++++.++.|. +|++.++........           ......++|+|+|..++....+   ..+.+|+......  .
T Consensus       350 ~l~~~s~~~~l~~~~d~~~~~~~~l~~~-----------~~~~~~~~~SpDG~~la~~~~~---~~v~~~d~~tg~~~~~  415 (1045)
T 1k32_A          350 AFIHGTREGDFLGIYDYRTGKAEKFEEN-----------LGNVFAMGVDRNGKFAVVANDR---FEIMTVDLETGKPTVI  415 (1045)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEECCCC-----------CCSEEEEEECTTSSEEEEEETT---SEEEEEETTTCCEEEE
T ss_pred             eEEEEECCCceEEEEECCCCCceEecCC-----------ccceeeeEECCCCCEEEEECCC---CeEEEEECCCCceEEe
Confidence            999999988999 999887532111111           2233445555555554433322   1234444432221  2


Q ss_pred             ccCCCcccCCccccCCCCcccccCCC---------CCCCCCCCcccCCCCCCCChhhHHHHhhhccCCc--ccccccccc
Q 006909          533 IRDSERFSLGSWFSNDGPCRGSATWP---------AEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVD--DVRAISATW  601 (626)
Q Consensus       533 ~~~~~~~~~~~~~s~dg~~l~s~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~d  601 (626)
                      ...+...+..++|||||+++++++..         +..|.+||+.++           ....+ ..+..  ...++++ |
T Consensus       416 ~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-----------~~~~l-~~~~~~~~~~~~sp-d  482 (1045)
T 1k32_A          416 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-----------KIFAA-TTENSHDYAPAFDA-D  482 (1045)
T ss_dssp             EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-----------EEEEC-SCSSSBEEEEEECT-T
T ss_pred             ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-----------cEEEe-eCCCcccCCceEcC-C
Confidence            22456668899999999998876542         248999999876           21111 11111  1235666 8


Q ss_pred             ceEEEEecCCceEeeeeecC
Q 006909          602 GLVIVTAGCDGMIKTFHNYG  621 (626)
Q Consensus       602 g~~ivt~g~Dg~Irvw~~~g  621 (626)
                      |+.|++++.++..++|+...
T Consensus       483 G~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          483 SKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             SCEEEEEESCCCCCEECSSS
T ss_pred             CCEEEEEecccCCcCcchhc
Confidence            99999999999998887543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=7.1e-22  Score=213.00  Aligned_cols=333  Identities=9%  Similarity=0.034  Sum_probs=219.3

Q ss_pred             EcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC--CCCeEEEeccCCCC
Q 006909          276 WSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV--CEKRVVDWADVRDV  352 (626)
Q Consensus       276 ~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~--~~~~~~~~~~~~~~  352 (626)
                      ++|++ .+++++.|++|.+||..+++++..+.....+.+++|+| ++++|++++.|++|++||+  .+++++....+...
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~  223 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE  223 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC
Confidence            67877 67788899999999999999999887444489999999 9999999999999999999  78887776667778


Q ss_pred             eEEEEEee----CCCEEEEEec-CCcEEEEEcCCCceeeeEEeecccc-----ccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909          353 ISAICYIP----DGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRK-----KTSGNKITGIQFSRDESQRIMITSEDS  422 (626)
Q Consensus       353 i~~i~~sp----~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~~l~~~s~dg  422 (626)
                      +..++|+|    +|+++++++. +++|.+||..+.+... .+...+..     ......+..+.++|++..++++...++
T Consensus       224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~-~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g  302 (543)
T 1nir_A          224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ-IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  302 (543)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE-EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce-eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence            89999999    9999999884 8999999998776543 22221100     011247899999998878888888999


Q ss_pred             cEEEEeCCccee-eeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCCCCCCCccC---Cccceee-eccC-C
Q 006909          423 KLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKN---SVRSCEH-FFSE-G  495 (626)
Q Consensus       423 ~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~-~~~~-g  495 (626)
                      .|.+||..+... ......+...+..+.|+|+|+++++++ .+++|.+||+.++.........   ....... ++|+ |
T Consensus       303 ~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g  382 (543)
T 1nir_A          303 KVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  382 (543)
T ss_dssp             EEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTE
T ss_pred             eEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCc
Confidence            999999764221 111112456688899999999877654 5889999999987322111110   0000111 2444 3


Q ss_pred             cEEEEecC-CCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccC--CC----CCCCCCCCcc
Q 006909          496 VSVAVQWP-GIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSAT--WP----AEKLPLWDVT  568 (626)
Q Consensus       496 ~~~av~~s-~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~--~~----d~~i~vwd~~  568 (626)
                      ..++..-. .+...++.......  .-..|..+   ..+..++..+..++|+|||++|.+++  .+    ++.|.+||+.
T Consensus       383 ~~~~s~~~~d~~V~v~d~~~~~~--~~~~~~~v---~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~  457 (543)
T 1nir_A          383 PVWSTSHLGDGSISLIGTDPKNH--PQYAWKKV---AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK  457 (543)
T ss_dssp             EEEEEEBSSSSEEEEEECCTTTC--TTTBTSEE---EEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             cEEEeccCCCceEEEEEeCCCCC--chhcCeEE---EEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence            33333221 22233333332110  00112221   22344555678899999999998876  22    4699999999


Q ss_pred             cCCCCCCCChhhHHHHhhhc-----cCCccccccccccceEEEEec-----CCceEeeeeecC
Q 006909          569 IDSDGYCQDPQQQRLQQQCL-----NNVDDVRAISATWGLVIVTAG-----CDGMIKTFHNYG  621 (626)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~dg~~ivt~g-----~Dg~Irvw~~~g  621 (626)
                      ++. .....  .  +.....     ........+++ +|+.+..+.     .|++|.||+..-
T Consensus       458 ~~~-~~~~~--~--~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          458 NLD-AKYQV--L--PIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             CTT-SCCEE--E--CHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             CCC-CCeEE--e--echhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEECCC
Confidence            872 11000  0  000000     11111235566 788777653     489999999654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=4.7e-21  Score=194.30  Aligned_cols=249  Identities=12%  Similarity=0.153  Sum_probs=175.9

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCC-CcEEEEEcC--CCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGED-GVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~D-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      .|...+.+++|+|+|++|++++.+ +.|.+|++.  ++..                                        
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------------------------------------   74 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------------------------------------   74 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------------------------------
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------------------------------------
Confidence            477889999999999999988886 999999997  3211                                        


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEe-CCCcEEEecc---CCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe-C
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-I  329 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d~~v~iwd~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~  329 (626)
                         ..+..+..+. .+..++|+|++ +|++++ .++.|.+||+   .....+..+.....+.+++|+| +++++++++ .
T Consensus        75 ---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~  149 (343)
T 1ri6_A           75 ---TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALK  149 (343)
T ss_dssp             ---EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGG
T ss_pred             ---eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCC
Confidence               1122333333 78899999998 565555 4889999999   4445556666666799999999 998888777 8


Q ss_pred             CCcEEEEeCCC-CeEEE------eccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCC--Cceeee-EEeeccccccC
Q 006909          330 DGKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKLE-KVDFHDRKKTS  398 (626)
Q Consensus       330 dg~v~iwd~~~-~~~~~------~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~--~~~~~~-~~~~~~~~~~~  398 (626)
                      ++.|++||+.+ +++..      .......+..++|+|+|+++++++ .++.|.+|++..  +..... ...........
T Consensus       150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (343)
T 1ri6_A          150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD  229 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred             CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence            89999999987 65432      222345788999999999776655 789999999964  322211 11111100011


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECC
Q 006909          399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYD  472 (626)
Q Consensus       399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~  472 (626)
                      ...+..++|+|+|..+++++..++.|.+||+..   .............+..++|+|+|++|++++ .++.|.+|+++
T Consensus       230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            346778999999844444566899999999762   122222211223488999999999988887 57999999665

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=9.8e-22  Score=220.94  Aligned_cols=311  Identities=13%  Similarity=0.092  Sum_probs=197.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      .+.+++|+|||+++++ +.||+|++||+.++.                                             ...
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~---------------------------------------------~~~   51 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT---------------------------------------------STV   51 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC---------------------------------------------CEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCc---------------------------------------------EEE
Confidence            4678999999998877 789999999998742                                             233


Q ss_pred             eeccCcc---ceEEEEEcCCC-eEEEEeCC---------CcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEE
Q 006909          263 ELHGHKG---DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       263 ~~~~h~~---~V~~l~~s~~~-~l~s~s~d---------~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s  326 (626)
                      .+.+|..   .|.+++|+||| +|++++.+         +.|.+||+.+++......   +...+..++|+| +++.|++
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~  130 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIF  130 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEE
Confidence            4444543   48999999998 78888764         778899999887632222   344588999999 9999999


Q ss_pred             EeCCCcEEEEeCCCCeEEEeccC-CCC------------------eEEEEEeeCCCEEEEEecCC---------------
Q 006909          327 GSIDGKVRIWGVCEKRVVDWADV-RDV------------------ISAICYIPDGKGFIVGSITG---------------  372 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~~~~~~~~-~~~------------------i~~i~~sp~g~~l~~g~~dg---------------  372 (626)
                      ++. +.|++||+.+++...+... ...                  +.+++|+|||+.|++++.++               
T Consensus       131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~  209 (723)
T 1xfd_A          131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI  209 (723)
T ss_dssp             EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred             EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence            886 7999999998876654332 222                  37899999999999987653               


Q ss_pred             -------------------cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEeC
Q 006909          373 -------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE----DSKLRILDG  429 (626)
Q Consensus       373 -------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~----dg~i~iwd~  429 (626)
                                         .|++||+.+..... .+..+.....+...+..++|+||| +++++.+.    +..|++||+
T Consensus       210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL-EMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE-ECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEET
T ss_pred             CCcceeccCCCCCCCCCeeEEEEEECCCCceeE-EeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeC
Confidence                               78899988765322 111111111124578999999998 56666543    357999997


Q ss_pred             Ccce--eeeeecCCCCCe----EEEEEcCCCCEEEE--EeCCc------cEEEEE-CCCCC---CCCCCc-cCCccceee
Q 006909          430 VDVI--HKFKGLPKSGSQ----MSASFTTTGKHIIS--IGDDC------RVYVWN-YDELC---FPSSKQ-KNSVRSCEH  490 (626)
Q Consensus       430 ~~~~--~~~~~~~~~~~v----~~~~~sp~g~~l~s--~s~dg------~I~iwd-~~~~~---~~~~~~-~~~~~~~~~  490 (626)
                      .+..  ..+... +...+    ..++|+|||++|+.  +..++      .|++|| ..++.   ...... ...+.....
T Consensus       288 ~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~  366 (723)
T 1xfd_A          288 TTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA  366 (723)
T ss_dssp             TTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred             CCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence            6533  222221 23333    37899999997775  44566      577777 34432   111111 111122234


Q ss_pred             eccCCcEEEEecCCCCcccccccCCCccccCccccccCC----CCcccC---CCcccCCccccCCCCccccc
Q 006909          491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET----APWIRD---SERFSLGSWFSNDGPCRGSA  555 (626)
Q Consensus       491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~----~~~~~~---~~~~~~~~~~s~dg~~l~s~  555 (626)
                      |+|+|..++.....+           ......+|.....    ...+..   +...+..++|||||++++..
T Consensus       367 ~spdg~~l~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          367 YDEKGNKIYFLSTED-----------LPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             EETTTTEEEEEESSS-----------CTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             EcCCCCEEEEEEcCC-----------CCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence            555555444333321           1112233332111    011111   34457788999999977653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=4.3e-22  Score=223.28  Aligned_cols=282  Identities=11%  Similarity=0.052  Sum_probs=187.9

Q ss_pred             ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----Ce
Q 006909          268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KR  342 (626)
Q Consensus       268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-----~~  342 (626)
                      ...|.+++|+|++.++.+ .++.|++||+.+++......+...+.+++|+| +++.|+++ .++.|++||+.+     ++
T Consensus        81 ~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           81 AFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             -CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             ccCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            357999999999755555 45999999999998877777778899999999 99999985 679999999988     77


Q ss_pred             EEEeccCCCC---------------eEEEEEeeCCCEEEEEe---------------------------------cCCcE
Q 006909          343 VVDWADVRDV---------------ISAICYIPDGKGFIVGS---------------------------------ITGTC  374 (626)
Q Consensus       343 ~~~~~~~~~~---------------i~~i~~sp~g~~l~~g~---------------------------------~dg~i  374 (626)
                      ..........               +.++.|+|||++|++++                                 .+..|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            6654333222               58999999999999987                                 34679


Q ss_pred             EEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEeCCcc-e-eeeeecCCCC---C
Q 006909          375 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-----KLRILDGVDV-I-HKFKGLPKSG---S  444 (626)
Q Consensus       375 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg-----~i~iwd~~~~-~-~~~~~~~~~~---~  444 (626)
                      ++||+.++.......     ...+...+..++|+||| ++|++++.++     .|++||..+. . ..+....+..   .
T Consensus       238 ~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          238 GIYHLATGKTVYLQT-----GEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             EEEETTTTEEEECCC-----CSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             EEEECCCCceEeecc-----CCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence            999998776422111     11234678999999998 6777776665     8999998754 2 2222111222   3


Q ss_pred             eEEEEEcC--CCCEEEEEeCCccEEEEECC-CCCC--CCCCccCCccceeeeccCCcEEEEecCCCC---cccccccCCC
Q 006909          445 QMSASFTT--TGKHIISIGDDCRVYVWNYD-ELCF--PSSKQKNSVRSCEHFFSEGVSVAVQWPGIG---TEQKSLCSSS  516 (626)
Q Consensus       445 v~~~~~sp--~g~~l~s~s~dg~I~iwd~~-~~~~--~~~~~~~~~~~~~~~~~~g~~~av~~s~~~---~~l~~~~~~~  516 (626)
                      +..++|+|  +|++|++++.|+.++||.++ ++..  ....+...+..+..|+|+|..++++...++   ..++..    
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~----  387 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI----  387 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE----
T ss_pred             cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE----
Confidence            46789999  99999999999999999876 2211  111111112222445555554444433332   222222    


Q ss_pred             ccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCC---CCCCCCCcccC
Q 006909          517 LRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPA---EKLPLWDVTID  570 (626)
Q Consensus       517 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d---~~i~vwd~~~~  570 (626)
                              +..........+...+..++|||||++++......   ..|.+||+.++
T Consensus       388 --------d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          388 --------DIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             --------ETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             --------EcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence                    21111111122334467889999999877643211   45889998776

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=5.4e-20  Score=187.43  Aligned_cols=272  Identities=9%  Similarity=0.064  Sum_probs=193.0

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          180 HKGCIWTLKFSPDGRYLASGGE-------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ....+..++|+|+|++|++++.       ++.|.+||..+++.                                     
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-------------------------------------   81 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-------------------------------------   81 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-------------------------------------
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-------------------------------------
Confidence            4567889999999998888874       56899999887432                                     


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCCC----------CeEEEEEeeCC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN----------YVTCVQFNPID  320 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~----------~v~~~~~~p~~  320 (626)
                              +..+.. ...+..++|+|++ ++ ++...++.|.+||..+++.+..+....          .+.+++|+| +
T Consensus        82 --------~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d  151 (353)
T 3vgz_A           82 --------TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-A  151 (353)
T ss_dssp             --------EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-T
T ss_pred             --------EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-C
Confidence                    222221 2346778999987 34 455667999999999999888775322          278999999 8


Q ss_pred             CCEEEEEe--CCCcEEEEeCCCCeEEEecc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc
Q 006909          321 DNYFISGS--IDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  397 (626)
Q Consensus       321 ~~~l~s~s--~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  397 (626)
                      ++++++++  .++.|.+||+.+++...... +...+.+++|+|+|+++++++.++.|.+||+.+.+.... +...  ...
T Consensus       152 g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~-~~~~--~~~  228 (353)
T 3vgz_A          152 TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR-KKLL--DDG  228 (353)
T ss_dssp             TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE-EECC--CSS
T ss_pred             CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE-EEcC--CCC
Confidence            88777766  47889999999988877665 566688999999999999999999999999988765432 2221  112


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCCC
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  476 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~~  476 (626)
                      +...+.+++|+|++..++++...++.|.+||..+..........  ....++|+|+|++++.++ .++.|.+||..++..
T Consensus       229 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          229 KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP--ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS--SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC--CCceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            23568899999998544444555699999998654332222111  225689999999766655 689999999987632


Q ss_pred             CCCCccCCccceeeeccCCcEEEEecCCCCcccccccC
Q 006909          477 PSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  514 (626)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~  514 (626)
                      ...           +...+....++|+|+|..++....
T Consensus       307 ~~~-----------~~~~~~~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          307 VKT-----------FDTPTHPNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             EEE-----------EECCSEEEEEEECTTSCEEEEEEE
T ss_pred             EEE-----------EecCCCCCeEEEcCCCCEEEEEEc
Confidence            111           111223456777777776654433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=2.8e-21  Score=217.88  Aligned_cols=325  Identities=9%  Similarity=0.031  Sum_probs=210.5

Q ss_pred             ccceEEEEEcCCC-eEEEEeC-CC-----cEEEeccCCCeeeEeecCC-------------------------CCeEEEE
Q 006909          268 KGDVLDLAWSNSN-YLLSCSM-DK-----TVRMWQVGCNQCLNVFDHH-------------------------NYVTCVQ  315 (626)
Q Consensus       268 ~~~V~~l~~s~~~-~l~s~s~-d~-----~v~iwd~~~~~~~~~~~~~-------------------------~~v~~~~  315 (626)
                      ...+.+++|+|+| +|++++. |+     .|++||+.+++....+.+.                         ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            4579999999998 7888888 88     8999999999887766421                         2378999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEeCCCC---eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909          316 FNPIDDNYFISGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH  392 (626)
Q Consensus       316 ~~p~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~  392 (626)
                      |+| ++++|++++. +.|++||+.++   ....+..+...+..++|+|||++|+.++ ++.|++||+.++.....  ...
T Consensus       116 ~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~--~~~  190 (741)
T 2ecf_A          116 WSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL--TAD  190 (741)
T ss_dssp             ECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC--CCC
T ss_pred             ECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe--ccC
Confidence            999 9999999886 99999999998   7777778888899999999999999887 56999999987654321  111


Q ss_pred             cccc---c--------CCCCeEEEEEcCCCCcEEEEEeCCC---------------------------------cEEEEe
Q 006909          393 DRKK---T--------SGNKITGIQFSRDESQRIMITSEDS---------------------------------KLRILD  428 (626)
Q Consensus       393 ~~~~---~--------~~~~i~~l~~s~~~~~~l~~~s~dg---------------------------------~i~iwd  428 (626)
                      ....   .        ....+..+.|+||| ++|++++.|+                                 .|++||
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            1000   0        00125789999998 6777776654                                 788899


Q ss_pred             CCc-ceeeeee--cCCCCCeEEEEEcCCCCEEEEEeC-----CccEEEEECCCCCCCCCCc--cCC---ccceeeeccCC
Q 006909          429 GVD-VIHKFKG--LPKSGSQMSASFTTTGKHIISIGD-----DCRVYVWNYDELCFPSSKQ--KNS---VRSCEHFFSEG  495 (626)
Q Consensus       429 ~~~-~~~~~~~--~~~~~~v~~~~~sp~g~~l~s~s~-----dg~I~iwd~~~~~~~~~~~--~~~---~~~~~~~~~~g  495 (626)
                      +.. .......  ..+...+..++| |||++|++++.     +..|++||+.++.......  ...   ......|+|+|
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg  348 (741)
T 2ecf_A          270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG  348 (741)
T ss_dssp             SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred             CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence            765 4322221  135677899999 99999997754     5789999998873221111  110   12345666776


Q ss_pred             cEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCc-cccCCCCcccccCCCCC--CCCCCCcccCCC
Q 006909          496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGS-WFSNDGPCRGSATWPAE--KLPLWDVTIDSD  572 (626)
Q Consensus       496 ~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~s~~~~d~--~i~vwd~~~~~~  572 (626)
                      .+++++-..+...|+......            ....+..+...+..+ +|+|||+.++.....++  .+++|++.....
T Consensus       349 ~~~~~~~~~g~~~l~~~~~~~------------~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~  416 (741)
T 2ecf_A          349 SILWSSERTGFQHLYRIDSKG------------KAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG  416 (741)
T ss_dssp             CEEEEECTTSSCEEEEECSSS------------CEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred             eEEEEecCCCccEEEEEcCCC------------CeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence            644443222223344332110            011122333445565 59999997754433244  788998865310


Q ss_pred             CCCCChhhHHHHhhhccCCccccccccccceEEEEecCC----ceEeeeeecC
Q 006909          573 GYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCD----GMIKTFHNYG  621 (626)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~D----g~Irvw~~~g  621 (626)
                               ....+......+..++++ ||+.|+....+    +.+.+|+.-|
T Consensus       417 ---------~~~~l~~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          417 ---------QPQRLSKAPGMHSASFAR-NASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             ---------CCEECCCSCSEEEEEECT-TSSEEEEEEEETTEEEEEEEEETTS
T ss_pred             ---------CeeecccCCCceEEEECC-CCCEEEEEecCCCCCCeEEEEEcCC
Confidence                     011111111223356666 78777655433    4577776544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=7.1e-20  Score=185.01  Aligned_cols=238  Identities=11%  Similarity=0.120  Sum_probs=169.8

Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec
Q 006909          187 LKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  265 (626)
Q Consensus       187 l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (626)
                      ..|.++++ .+++++.++.|.+||..+++                                             ....+.
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~---------------------------------------------~~~~~~   37 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE---------------------------------------------ILNQIT   37 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCC---------------------------------------------EEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccc---------------------------------------------eeeeEE
Confidence            34666655 47788889999999998743                                             233334


Q ss_pred             cCccceEEEEEcCCC-eEEEEeC-CCcEEEeccCCCee-eEeecCCC-CeEEEEEeeCCCCEEEEEeCCC---cEEEEeC
Q 006909          266 GHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQC-LNVFDHHN-YVTCVQFNPIDDNYFISGSIDG---KVRIWGV  338 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s~s~-d~~v~iwd~~~~~~-~~~~~~~~-~v~~~~~~p~~~~~l~s~s~dg---~v~iwd~  338 (626)
                      .+...+ .++|+|++ ++++++. ++.|.+||+.+++. ...+.... +..+++|+| ++++++++..++   .|.+||+
T Consensus        38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEET
T ss_pred             ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEEC
Confidence            445556 99999998 5665555 88999999999887 66665444 444499999 999988555543   8999999


Q ss_pred             CCCeEEEeccCCCCeEEEEEeeCCCEEEEE-ecCCc-EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          339 CEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       339 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      .+++............+++|+|+|++++++ ..++. +.+|++.......... ..  .......+..++|+|+|..+++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~--~~~~~~~~~~~~~spdg~~l~v  192 (331)
T 3u4y_A          116 LKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QE--FISGGTRPFNITFTPDGNFAFV  192 (331)
T ss_dssp             TTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EE--EECSSSSEEEEEECTTSSEEEE
T ss_pred             CCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cc--cccCCCCccceEECCCCCEEEE
Confidence            999888777777778999999999866665 45588 9999998644322211 00  1122356899999999844555


Q ss_pred             EEeCCCcEEEEeCCccee---eeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCC
Q 006909          417 ITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC  475 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~  475 (626)
                      ++..++.|.+||+.+...   .... .....+..++|+|+|++|+.++ .++.|.+||+.++.
T Consensus       193 ~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          193 ANLIGNSIGILETQNPENITLLNAV-GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT  254 (331)
T ss_dssp             EETTTTEEEEEECSSTTSCEEEEEE-ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred             EeCCCCeEEEEECCCCcccceeeec-cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence            666789999999864332   2222 2346778899999999877665 47889999998863

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=6e-20  Score=185.54  Aligned_cols=248  Identities=10%  Similarity=0.097  Sum_probs=173.8

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      ..+..+...+ +++|+|+|++|++++. ++.|.+||+.++..                                      
T Consensus        34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--------------------------------------   74 (331)
T 3u4y_A           34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--------------------------------------   74 (331)
T ss_dssp             EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------------------------------------
T ss_pred             eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------------------------------------
Confidence            3344456667 9999999997776665 88999999987321                                      


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCC---cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEe
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGS  328 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s  328 (626)
                            ....+..+..+..+++|+|++ +++++..++   .|.+||+.+++.+..+.....+.+++|+| ++++++ +..
T Consensus        75 ------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~  147 (331)
T 3u4y_A           75 ------KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDR  147 (331)
T ss_dssp             ------EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEE
T ss_pred             ------eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEec
Confidence                  034444555666569999998 666444442   89999999999998888777789999999 887554 445


Q ss_pred             CCCc-EEEEeCCCCe-E----EEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          329 IDGK-VRIWGVCEKR-V----VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       329 ~dg~-v~iwd~~~~~-~----~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      .++. |.+|++.... +    .........+..++|+|+|+++++++ .++.|.+||+.+.+..........     ...
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~  222 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-----NNL  222 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-----SSC
T ss_pred             CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-----CCC
Confidence            5688 9999987532 2    12234456689999999999766555 688999999987765111111111     256


Q ss_pred             eEEEEEcCCCCcEEE-EEeCCCcEEEEeCCccee----eeeec--CCCC---CeEEEEEcCCCCEEEEEeC-CccEEEEE
Q 006909          402 ITGIQFSRDESQRIM-ITSEDSKLRILDGVDVIH----KFKGL--PKSG---SQMSASFTTTGKHIISIGD-DCRVYVWN  470 (626)
Q Consensus       402 i~~l~~s~~~~~~l~-~~s~dg~i~iwd~~~~~~----~~~~~--~~~~---~v~~~~~sp~g~~l~s~s~-dg~I~iwd  470 (626)
                      +..++|+|+| ++++ +...++.|.+||..+...    .+...  .+..   ....++|+|+|++|++++. ++.|.+||
T Consensus       223 ~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          223 PGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             CCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCC-CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence            7889999998 5554 445678999999875433    11111  1111   2245899999998876654 57999999


Q ss_pred             CCCC
Q 006909          471 YDEL  474 (626)
Q Consensus       471 ~~~~  474 (626)
                      +.+.
T Consensus       302 ~~~~  305 (331)
T 3u4y_A          302 ISGK  305 (331)
T ss_dssp             TTSC
T ss_pred             ecCC
Confidence            9875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=1.4e-20  Score=186.17  Aligned_cols=203  Identities=14%  Similarity=0.096  Sum_probs=148.7

Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-CeeeEeec-C-CCCeEEEEEeeCCCCEEEEEeC--CC--cE
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-H-HNYVTCVQFNPIDDNYFISGSI--DG--KV  333 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-~~~~~~~~-~-~~~v~~~~~~p~~~~~l~s~s~--dg--~v  333 (626)
                      ..+..|...|.+++|+|++ +|++++ ++.|.+||+.+ ++...... + ...+.+++|+| ++++|++++.  ++  .|
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEE
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceE
Confidence            3455688899999999998 566655 88999999998 87776664 3 36789999999 9999999983  33  45


Q ss_pred             EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEE-EEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      ..+++.++....+..+ ..+..++|+|+++.|+ ++..++.+++|++.........+      ..+...+.+++|+|+| 
T Consensus       113 ~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg-  184 (297)
T 2ojh_A          113 YLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL------THGEGRNDGPDYSPDG-  184 (297)
T ss_dssp             EEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC------CCSSSCEEEEEECTTS-
T ss_pred             EEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc------ccCCCccccceECCCC-
Confidence            5555566665444433 3488999999999887 67889999999975432222211      1224679999999998 


Q ss_pred             cEEEEE-eCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC-----------ccEEEEECCCC
Q 006909          413 QRIMIT-SEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-----------CRVYVWNYDEL  474 (626)
Q Consensus       413 ~~l~~~-s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d-----------g~I~iwd~~~~  474 (626)
                      .+++++ ..++.+++|+.. ..........+...+..++|+|+|++|++++.+           +.|++||+.++
T Consensus       185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence            455554 468999999864 222222233356678899999999999988765           57999999876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=2.2e-20  Score=184.70  Aligned_cols=234  Identities=14%  Similarity=0.125  Sum_probs=172.5

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      .+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ +..                                       
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------------------------------------   75 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------------------------------------   75 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------------------------------------
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------------------------------------
Confidence            3557899999999999999999987 78999999976 432                                       


Q ss_pred             cccCCCceeeccC-ccceEEEEEcCCC-eEEEEe--CCCcEEEec--cCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EE
Q 006909          255 QIEESPLQELHGH-KGDVLDLAWSNSN-YLLSCS--MDKTVRMWQ--VGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SG  327 (626)
Q Consensus       255 ~~~~~~~~~~~~h-~~~V~~l~~s~~~-~l~s~s--~d~~v~iwd--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~  327 (626)
                            .....+| ...+.+++|+|++ +|++++  .++.+.||.  +.++. ...+.+...+.+++|+| +++.|+ ++
T Consensus        76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~  147 (297)
T 2ojh_A           76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCG  147 (297)
T ss_dssp             ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEE
T ss_pred             ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEE
Confidence                  1222233 4678899999998 777777  334555554  45554 34454455699999999 888776 78


Q ss_pred             eCCCcEEEEe--CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909          328 SIDGKVRIWG--VCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       328 s~dg~v~iwd--~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      +.++.+++|+  +.++....+..+...+.+++|+|+|+.+++++ .++.+++|++.........+.      .+...+..
T Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~  221 (297)
T 2ojh_A          148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT------DSAYGDWF  221 (297)
T ss_dssp             EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC------CCSEEEEE
T ss_pred             CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe------cCCcccCC
Confidence            8899999998  45677777778888999999999999888776 589999999863322222221      12357889


Q ss_pred             EEEcCCCCcEEEEEeCC-----------CcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          405 IQFSRDESQRIMITSED-----------SKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~d-----------g~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      ++|+|+| .+|++++.+           +.|.+||+...  ........+...+..++|+|+|++|++++.+.
T Consensus       222 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          222 PHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             eEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            9999998 577766654           56999997643  22333334677889999999999999887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=1.6e-19  Score=182.88  Aligned_cols=204  Identities=15%  Similarity=0.183  Sum_probs=147.0

Q ss_pred             cCccceEEEEEcCCC-eEEEEeCC-CcEEEeccC--CCe--eeEeecCCCCeEEEEEeeCCCCEEEEEeC-CCcEEEEeC
Q 006909          266 GHKGDVLDLAWSNSN-YLLSCSMD-KTVRMWQVG--CNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGV  338 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s~s~d-~~v~iwd~~--~~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg~v~iwd~  338 (626)
                      .|...+.+++|+|++ +|++++.+ +.|.+|++.  ++.  .+..+.....+.+++|+| +++++++++. ++.|.+||+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence            466788999999998 67777776 999999997  554  334454445889999999 9988776665 788999999


Q ss_pred             ---CCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCC-CceeeeE-EeeccccccCCCCeEEEEEcCCCC
Q 006909          339 ---CEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEK-VDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       339 ---~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~-~~~~~~~-~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                         ...+..........+.+++|+|+|+++++++ .++.|.+||+.+ +...... ....   ......+..++|+|++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pdg~  190 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT---TVEGAGPRHMVFHPNEQ  190 (343)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE---CSTTCCEEEEEECTTSS
T ss_pred             CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc---cCCCCCcceEEECCCCC
Confidence               4444555555566789999999999888887 899999999987 4332111 0111   11235788999999984


Q ss_pred             cEEEEEeCCCcEEEEeCCc--c----eeeeeec----CCCCCeEEEEEcCCCCEEEE-EeCCccEEEEECCC
Q 006909          413 QRIMITSEDSKLRILDGVD--V----IHKFKGL----PKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDE  473 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~--~----~~~~~~~----~~~~~v~~~~~sp~g~~l~s-~s~dg~I~iwd~~~  473 (626)
                      .+++++..++.|.+|+...  .    .......    .....+..++|+|+|++|++ +..++.|++|++..
T Consensus       191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence            3445555889999999742  1    1122211    11345678999999998875 44789999999983

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=1.8e-19  Score=201.99  Aligned_cols=269  Identities=10%  Similarity=0.033  Sum_probs=187.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      ...|.+++|||| ++++.+. ++.|++||+.++.                                              
T Consensus        81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~----------------------------------------------  112 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARK----------------------------------------------  112 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTE----------------------------------------------
T ss_pred             ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCc----------------------------------------------
Confidence            357999999999 6666654 5999999998632                                              


Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-----CeeeEeecCC-CC--------------eEEEEEeeC
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----NQCLNVFDHH-NY--------------VTCVQFNPI  319 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-----~~~~~~~~~~-~~--------------v~~~~~~p~  319 (626)
                      ...+..+...+.+++|+|+| .|++ +.++.|++||+.+     ++........ ..              +.+++|+| 
T Consensus       113 ~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-  190 (706)
T 2z3z_A          113 VTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-  190 (706)
T ss_dssp             EEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-
T ss_pred             eEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-
Confidence            23334456678889999998 6666 5789999999998     7776654322 22              58999999 


Q ss_pred             CCCEEEEEe---------------------------------CCCcEEEEeCCCCeEEEec---cCCCCeEEEEEeeCCC
Q 006909          320 DDNYFISGS---------------------------------IDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDGK  363 (626)
Q Consensus       320 ~~~~l~s~s---------------------------------~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g~  363 (626)
                      ++++|++++                                 .+..|++||+.+++.....   .+...+.+++|+|||+
T Consensus       191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~  270 (706)
T 2z3z_A          191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN  270 (706)
T ss_dssp             TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC
Confidence            999999987                                 3467999999998876544   4557799999999999


Q ss_pred             EEEEEecCC-----cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEeCC-cceee
Q 006909          364 GFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DESQRIMITSEDSKLRILDGV-DVIHK  435 (626)
Q Consensus       364 ~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~--~~~~~l~~~s~dg~i~iwd~~-~~~~~  435 (626)
                      .|++++.++     .|++||+.++...........  ......+..++|+|  +| +++++++.++.++||+.. +....
T Consensus       271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~  347 (706)
T 2z3z_A          271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD--KHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRLI  347 (706)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC--SSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCEE
T ss_pred             EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC--CCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCEE
Confidence            999988776     899999988732222111111  11112346789999  97 688889999999998754 22222


Q ss_pred             eeecCCCCCeEE-EEEcCCCCEEEEEeCC-c----cEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecC
Q 006909          436 FKGLPKSGSQMS-ASFTTTGKHIISIGDD-C----RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  503 (626)
Q Consensus       436 ~~~~~~~~~v~~-~~~sp~g~~l~s~s~d-g----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s  503 (626)
                      .....+...+.. ++|+|+|+.|+.++.+ +    .|+.||+.++......+.. ......|+|+|..+++..+
T Consensus       348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPES-GMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSS-SEEEEEECTTSSEEEEEEE
T ss_pred             EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCC-ceEEEEECCCCCEEEEEec
Confidence            222335556766 7999999988765544 3    6777787765322222222 2345577777777666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=4e-19  Score=180.91  Aligned_cols=249  Identities=13%  Similarity=0.141  Sum_probs=171.1

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      .+...+..++|+|||+ |++++.   ++.|.+|++.++..                                        
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~----------------------------------------   75 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA----------------------------------------   75 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE----------------------------------------
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE----------------------------------------
Confidence            4567788899999999 555543   68999999965321                                        


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEe-CCCcEEEeccC-CC--eeeEeecCC----------CCeEEEEEeeCC
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVG-CN--QCLNVFDHH----------NYVTCVQFNPID  320 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d~~v~iwd~~-~~--~~~~~~~~~----------~~v~~~~~~p~~  320 (626)
                         ..+..+..+...+..++|+|++ +|++++ .++.|.+|++. ++  ..+..+.+.          ..+.+++|+| +
T Consensus        76 ---~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-d  151 (347)
T 3hfq_A           76 ---HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-D  151 (347)
T ss_dssp             ---EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-T
T ss_pred             ---EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-C
Confidence               1233444567788899999998 677776 67999999996 23  233333221          2488999999 8


Q ss_pred             CCEEEEEeCCCcEEEEeCC-CCeEEEe----ccCCCCeEEEEEeeCCCEEEE-EecCCcEEEEEcCC--Cceeee-EEee
Q 006909          321 DNYFISGSIDGKVRIWGVC-EKRVVDW----ADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASG--NDLKLE-KVDF  391 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~-~~~~~~~----~~~~~~i~~i~~sp~g~~l~~-g~~dg~i~i~d~~~--~~~~~~-~~~~  391 (626)
                      ++++++...++.|++|++. ++++...    ......+..++|+|+|+++++ +..++.+.+|++..  +..... ....
T Consensus       152 g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  231 (347)
T 3hfq_A          152 NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT  231 (347)
T ss_dssp             SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence            8866666678899999998 5554321    223346788999999997666 45678999999875  332111 1111


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC---cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC-ccEE
Q 006909          392 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-CRVY  467 (626)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d-g~I~  467 (626)
                      ..........+..++|+|+|..++++...++.|.+|++.   ..........+...+..++|+|+|++|++++.+ +.|.
T Consensus       232 ~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  311 (347)
T 3hfq_A          232 IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT  311 (347)
T ss_dssp             SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred             cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence            110001124588999999984344666778999999976   222222223345568899999999999888764 8999


Q ss_pred             EEECC
Q 006909          468 VWNYD  472 (626)
Q Consensus       468 iwd~~  472 (626)
                      +|+++
T Consensus       312 v~~~d  316 (347)
T 3hfq_A          312 LYARD  316 (347)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=8.7e-20  Score=199.66  Aligned_cols=259  Identities=12%  Similarity=0.053  Sum_probs=180.5

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      +..+|++++|+|||++||+++. ||+++||++.++                                             
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---------------------------------------------   54 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---------------------------------------------   54 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------------------------------------------
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------------------------------------------
Confidence            3567999999999999999887 999999998542                                             


Q ss_pred             CCceeeccCc-cceEEEEEcCCCeEEEEeC---CCcEEEeccCC---CeeeEeecCCCCeEEEEEeeCCCC-EEEEEeCC
Q 006909          259 SPLQELHGHK-GDVLDLAWSNSNYLLSCSM---DKTVRMWQVGC---NQCLNVFDHHNYVTCVQFNPIDDN-YFISGSID  330 (626)
Q Consensus       259 ~~~~~~~~h~-~~V~~l~~s~~~~l~s~s~---d~~v~iwd~~~---~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~s~d  330 (626)
                       ....+..|. ..+..++|+|+..+++++.   +...++|.+..   +... .+.....+...+|+| +++ .+++.+.+
T Consensus        55 -~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~-dg~~~~~~s~~~  131 (582)
T 3o4h_A           55 -ETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVD-TGEAVVFTGATE  131 (582)
T ss_dssp             -EEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEE-CSSCEEEEEECS
T ss_pred             -CcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCC-CCCeEEEEecCC
Confidence             123344454 6899999999855555554   45566665432   2222 333333455778888 664 34444444


Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +.+.+||+.+++...+..+..  .+++|+|||++|++++.+    +.|++||+.++...  .+.      .+...+..++
T Consensus       132 ~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~------~~~~~~~~~~  201 (582)
T 3o4h_A          132 DRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFD------SGEGSFSSAS  201 (582)
T ss_dssp             SCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EEC------CSSCEEEEEE
T ss_pred             CCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--Eee------cCCCccccce
Confidence            556699999988777665554  889999999999988877    78999999877643  221      2236789999


Q ss_pred             EcCCCCcEEEEEeCCC--cEEEEeCCcceeeeeecCCCCCeEEEE--------EcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909          407 FSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSAS--------FTTTGKHIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~--------~sp~g~~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      |+||| ++|+++..++  .|++||....... ....+...+..++        |+|||.++++++.|+++++|++  +..
T Consensus       202 ~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~  277 (582)
T 3o4h_A          202 ISPGM-KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER  277 (582)
T ss_dssp             ECTTS-CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE
T ss_pred             ECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe
Confidence            99998 6788888888  8999998754444 3333555566666        9999999999999999999999  321


Q ss_pred             CCCCccCCccceeeeccCCcEEEEecC
Q 006909          477 PSSKQKNSVRSCEHFFSEGVSVAVQWP  503 (626)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~g~~~av~~s  503 (626)
                      .. . .........|+ +|..++...+
T Consensus       278 ~~-~-~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          278 VE-A-PQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             EC-C-CSSEEEEEEEE-TTEEEEEEEE
T ss_pred             ec-c-CCCceEEEEec-CCEEEEEEcC
Confidence            11 1 11223345666 6666544433

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.84  E-value=4.1e-19  Score=199.58  Aligned_cols=280  Identities=11%  Similarity=0.100  Sum_probs=189.1

Q ss_pred             ccccccccC---cEEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCC
Q 006909          174 SQEIQAHKG---CIWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK  241 (626)
Q Consensus       174 ~~~l~~H~~---~V~~l~fspdg~~Latgs~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (626)
                      .+.+.+|..   .|.+++|||||++||+++.+         +.|.+||+.++...                         
T Consensus        50 ~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------------------  104 (723)
T 1xfd_A           50 TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-------------------------  104 (723)
T ss_dssp             EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------
T ss_pred             EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-------------------------
Confidence            344555654   49999999999999999875         77889999874321                         


Q ss_pred             CCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCC---------
Q 006909          242 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY---------  310 (626)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~---------  310 (626)
                                        .+....+|...+..++|+|+| .|++++. +.|++||+.+++...... +...         
T Consensus       105 ------------------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~  165 (723)
T 1xfd_A          105 ------------------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW  165 (723)
T ss_dssp             ------------------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred             ------------------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce
Confidence                              122223456668899999998 7777765 799999999888776554 2322         


Q ss_pred             ---------eEEEEEeeCCCCEEEEEeCCC----------------------------------cEEEEeCCCCeE-EEe
Q 006909          311 ---------VTCVQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRV-VDW  346 (626)
Q Consensus       311 ---------v~~~~~~p~~~~~l~s~s~dg----------------------------------~v~iwd~~~~~~-~~~  346 (626)
                               +.+++|+| +++.|++++.++                                  .|++||+.+++. ..+
T Consensus       166 v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          166 LYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             HHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred             eEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence                     37899999 999999987653                                  799999988874 444


Q ss_pred             ccC------CCCeEEEEEeeCCCEEEEEecC----CcEEEEEcCCCceeeeEEeeccccccCCCCe----EEEEEcCCCC
Q 006909          347 ADV------RDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKI----TGIQFSRDES  412 (626)
Q Consensus       347 ~~~------~~~i~~i~~sp~g~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i----~~l~~s~~~~  412 (626)
                      ..+      ...+..++|+|||+++++....    ..|++||+.+++........+      ...+    ..++|+|||.
T Consensus       245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES------EAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC------SSCCCCCCCCCEECTTSC
T ss_pred             eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc------CCEEeccCCCceEcCCCC
Confidence            333      5678999999999988776543    579999998876432211111      1222    3789999985


Q ss_pred             cEEEE-EeCCC------cEEEEe-CCcc----eeeeeecCCCCCeEE-EEEcCCCCEEEEEeCC---ccEEEEECCCCC-
Q 006909          413 QRIMI-TSEDS------KLRILD-GVDV----IHKFKGLPKSGSQMS-ASFTTTGKHIISIGDD---CRVYVWNYDELC-  475 (626)
Q Consensus       413 ~~l~~-~s~dg------~i~iwd-~~~~----~~~~~~~~~~~~v~~-~~~sp~g~~l~s~s~d---g~I~iwd~~~~~-  475 (626)
                      .++++ +..++      .|.+|| ....    ...+.  .+...+.. ++|+|+|++|+..+.+   +.+++|+++... 
T Consensus       319 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~  396 (723)
T 1xfd_A          319 KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN  396 (723)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred             eEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence            44444 55677      577777 3322    22222  12334444 6999999999866655   789999986431 


Q ss_pred             -CCCCCc----cCCccceeeeccCCcEEEEecCCCC
Q 006909          476 -FPSSKQ----KNSVRSCEHFFSEGVSVAVQWPGIG  506 (626)
Q Consensus       476 -~~~~~~----~~~~~~~~~~~~~g~~~av~~s~~~  506 (626)
                       ......    .........|+|+|..+++.++..+
T Consensus       397 ~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  432 (723)
T 1xfd_A          397 FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG  432 (723)
T ss_dssp             CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred             CCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence             111111    1223445678888888887765443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=3.9e-20  Score=207.79  Aligned_cols=330  Identities=10%  Similarity=0.012  Sum_probs=198.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec
Q 006909          186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  265 (626)
Q Consensus       186 ~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (626)
                      .++|+|||++++++ .|++|++||+.++..                                             ...+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~---------------------------------------------~~~~~   53 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS---------------------------------------------YTILS   53 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCE---------------------------------------------EEEEC
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcE---------------------------------------------EEEEc
Confidence            78999999766654 699999999987432                                             23333


Q ss_pred             cCcc---ceEEEEEcCCC-eEEEEeC---------CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          266 GHKG---DVLDLAWSNSN-YLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       266 ~h~~---~V~~l~~s~~~-~l~s~s~---------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                      +|..   .+.+++||||| +|++++.         +++|++||+.+++.+........+..++|+| +|+.|+++. ++.
T Consensus        54 ~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SP-DG~~la~~~-~~~  131 (719)
T 1z68_A           54 NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSP-VGSKLAYVY-QNN  131 (719)
T ss_dssp             HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECS-STTCEEEEE-TTE
T ss_pred             cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECC-CCCEEEEEE-CCe
Confidence            3333   48999999998 7777765         7899999999988732222346788999999 999999886 789


Q ss_pred             EEEEeCCCCeEEEec--cCCCCe-----------------EEEEEeeCCCEEEEEecCC---------------------
Q 006909          333 VRIWGVCEKRVVDWA--DVRDVI-----------------SAICYIPDGKGFIVGSITG---------------------  372 (626)
Q Consensus       333 v~iwd~~~~~~~~~~--~~~~~i-----------------~~i~~sp~g~~l~~g~~dg---------------------  372 (626)
                      |++||+.+++...+.  ++...+                 .+++|+|||++|++++.|.                     
T Consensus       132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  211 (719)
T 1z68_A          132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN  211 (719)
T ss_dssp             EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred             EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence            999999887766543  222212                 4899999999999987652                     


Q ss_pred             -------------cEEEEEcCCCcee-eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEe----CC
Q 006909          373 -------------TCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED----SKLRILD----GV  430 (626)
Q Consensus       373 -------------~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d----g~i~iwd----~~  430 (626)
                                   .|++||+.++... ...+........+...+..++|+||+ +++++....    ..|.+||    ..
T Consensus       212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~  290 (719)
T 1z68_A          212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQ  290 (719)
T ss_dssp             EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred             ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCC
Confidence                         7888998876532 00111101112345678999999996 666664332    2488899    65


Q ss_pred             cceeeeee----cCCCCCeE-----EEEEcCCCCEEEE--EeCCc--cEEEEECCCCCCCCCCccCCccceeeeccCCcE
Q 006909          431 DVIHKFKG----LPKSGSQM-----SASFTTTGKHIIS--IGDDC--RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS  497 (626)
Q Consensus       431 ~~~~~~~~----~~~~~~v~-----~~~~sp~g~~l~s--~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~  497 (626)
                      +.......    ..+...+.     .+.|+|||+.|+.  ...+|  .|++|++.++................+. ++..
T Consensus       291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~  369 (719)
T 1z68_A          291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDS  369 (719)
T ss_dssp             SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSE
T ss_pred             CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCE
Confidence            43221111    23555565     7899999996654  44454  6777787765321111111111112223 4443


Q ss_pred             EEEecCC-----CCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccc-cCCC-CCCCCCCCcccC
Q 006909          498 VAVQWPG-----IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWP-AEKLPLWDVTID  570 (626)
Q Consensus       498 ~av~~s~-----~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s-~~~~-d~~i~vwd~~~~  570 (626)
                      +......     ....++.+.........   ..+.  ..+.++...+..+.|+|||++++. .+.+ ...+.+||+.++
T Consensus       370 i~~~~~~~~~~~~~~~l~~~~~~~g~~~~---~~l~--~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g  444 (719)
T 1z68_A          370 LFYSSNEFEEYPGRRNIYRISIGSYPPSK---KCVT--CHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD  444 (719)
T ss_dssp             EEEEESCGGGCTTCBEEEEEECSSSSCCE---EESS--TTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred             EEEEEecCCCCCceEEEEEEeCCCCCCCc---eecc--CccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence            3333332     23334433221100000   0000  001113344567889999997764 2221 134677887766

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.83  E-value=3.6e-19  Score=179.85  Aligned_cols=250  Identities=8%  Similarity=-0.009  Sum_probs=172.6

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec-cCcc-ce
Q 006909          194 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKG-DV  271 (626)
Q Consensus       194 ~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~V  271 (626)
                      ++|++++.++.|.+||+.+++.                                             +..+. ++.. .+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~---------------------------------------------~~~~~~~~~~~~~   36 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV---------------------------------------------DKVITIADAGPTP   36 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE---------------------------------------------EEEEECTTCTTCC
T ss_pred             cEEEEcCCCCeEEEEECCCCcE---------------------------------------------EEEEEcCCCCCCc
Confidence            4789999999999999987432                                             22232 2221 47


Q ss_pred             EEEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCCC------CeEEEEEeeCCCCEEEEEe------------CCC
Q 006909          272 LDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS------------IDG  331 (626)
Q Consensus       272 ~~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~------~v~~~~~~p~~~~~l~s~s------------~dg  331 (626)
                      ..++|+|++ .+ ++++.++.|.+||+.+++.+..+....      .+.+++|+| +++++++++            .++
T Consensus        37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T 1pby_B           37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCC
T ss_pred             cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCc
Confidence            789999998 54 566678899999999999887775433      677899999 998888886            579


Q ss_pred             cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          332 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      .|.+||+.+++..........+.+++|+|+|++++++  ++.|.+||+.+.+... .+.....    ..   .+.|+|++
T Consensus       116 ~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~-~~~~~~~----~~---~~~~s~dg  185 (337)
T 1pby_B          116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE-DKPIQSW----EA---ETYAQPDV  185 (337)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE-EECSTTT----TT---TTBCCCBC
T ss_pred             eEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEee-eeecccc----CC---CceeCCCc
Confidence            9999999998877666666678899999999988888  6899999998876532 2221110    11   22678887


Q ss_pred             CcEEEEEeCCC-----------------------cEEEEeCCccee-eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909          412 SQRIMITSEDS-----------------------KLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  467 (626)
Q Consensus       412 ~~~l~~~s~dg-----------------------~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~  467 (626)
                      ..+++++..++                       .|.+||..+... ......+...+.+++|+|+|++|+++  ++.|+
T Consensus       186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~  263 (337)
T 1pby_B          186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE  263 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred             cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence            43333333333                       468999775432 22233355678899999999999988  79999


Q ss_pred             EEECCCCCCCCCCccCCccceeeeccCCcEEEEe
Q 006909          468 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ  501 (626)
Q Consensus       468 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~  501 (626)
                      +||+.++..............+.|+|+|..+.++
T Consensus       264 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  297 (337)
T 1pby_B          264 SFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             EEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             EEECCCCcCcceecCCCceeeEEECCCCCEEEEE
Confidence            9999876322111111222334455555544444

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=3.2e-19  Score=187.01  Aligned_cols=259  Identities=15%  Similarity=0.153  Sum_probs=169.8

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      +...++.+++++++.+|++|+.|+ ++||+........  . ....      ....                    ....
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~--~-~~~~------~~~~--------------------~~~~   84 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN--K-PGDD------PNKI--------------------VDKV   84 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC--C-TTCC------TTCE--------------------EECC
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhc--c-cccC------cccc--------------------cccC
Confidence            344689999999999999999998 9999875421000  0 0000      0000                    0011


Q ss_pred             CceeeccCccceEEEEEcCCC-eEE----EEeCCCcEEEeccCCC--------ee---eEee-cCCCCeEEEEEeeCCCC
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLL----SCSMDKTVRMWQVGCN--------QC---LNVF-DHHNYVTCVQFNPIDDN  322 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~----s~s~d~~v~iwd~~~~--------~~---~~~~-~~~~~v~~~~~~p~~~~  322 (626)
                      +... ..|...|.+++|+|++ +|+    +++.|++|+|||+.++        +.   +..+ .|...|.+++|+|.+++
T Consensus        85 ~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  163 (434)
T 2oit_A           85 QGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS  163 (434)
T ss_dssp             CCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT
T ss_pred             cccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC
Confidence            1112 2467889999999998 777    7888999999998765        22   2333 37889999999994489


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc-ccCCC
Q 006909          323 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-KTSGN  400 (626)
Q Consensus       323 ~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~  400 (626)
                      +|++++.||+|++||++++... ....|...|.+++|+|+|++|++|+.||.|++||++. ... ..+..+... ..|..
T Consensus       164 ~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~-~~~~~~~~~~~~~~~  241 (434)
T 2oit_A          164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEK-KVIPCPPFYESDHPV  241 (434)
T ss_dssp             EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEE-EEECCCTTCCTTSCE
T ss_pred             EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-ccc-ccccCCcccCCCCce
Confidence            9999999999999999987554 4556788999999999999999999999999999983 222 122222111 12234


Q ss_pred             CeEEEEEcCCCCcEEEE-EeCCC------cEEEEeCCcc----eeeeee---c-----CCCCCeEEEEEcCCCCEEEEEe
Q 006909          401 KITGIQFSRDESQRIMI-TSEDS------KLRILDGVDV----IHKFKG---L-----PKSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~-~s~dg------~i~iwd~~~~----~~~~~~---~-----~~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      .|.+++|++++ .++++ +..+|      .+++|++.+.    ...+..   .     ....+...+.+-++.+++++++
T Consensus       242 ~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s  320 (434)
T 2oit_A          242 RVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAAS  320 (434)
T ss_dssp             EEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEE
T ss_pred             eEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEec
Confidence            89999999986 44433 44443      3899997643    112111   1     1122223333336667666655


Q ss_pred             C-CccEEEEECC
Q 006909          462 D-DCRVYVWNYD  472 (626)
Q Consensus       462 ~-dg~I~iwd~~  472 (626)
                      . .+.|.|....
T Consensus       321 ~~s~dv~vl~~~  332 (434)
T 2oit_A          321 AASTEVSILARQ  332 (434)
T ss_dssp             TTCSBCEEEEEC
T ss_pred             CCCCceeEEEec
Confidence            4 3446665543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=5.3e-19  Score=178.60  Aligned_cols=234  Identities=10%  Similarity=0.027  Sum_probs=173.1

Q ss_pred             cEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          183 CIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       183 ~V~~l~fspdg~~L-atgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      .+..++|+|+|+++ ++++.++.|.+||+.+++..                                             
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------------------------------------   69 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL---------------------------------------------   69 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---------------------------------------------
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---------------------------------------------
Confidence            47889999999866 45566789999999874321                                             


Q ss_pred             eeec-c----CccceEEEEEcCCC-eEEEEe------------CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCE
Q 006909          262 QELH-G----HKGDVLDLAWSNSN-YLLSCS------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       262 ~~~~-~----h~~~V~~l~~s~~~-~l~s~s------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~  323 (626)
                      ..+. +    |...+.+++|+|++ +|++++            .++.|.+||+.+++.+..+.....+.+++|+| ++++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~  148 (337)
T 1pby_B           70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSK  148 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSC
T ss_pred             eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCE
Confidence            1111 1    23356789999998 777775            57999999999999888887777788999999 9988


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC------------------------cEEEEEc
Q 006909          324 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG------------------------TCHFYKA  379 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg------------------------~i~i~d~  379 (626)
                      ++++  ++.|++||+.+++.............+.|+|+|+.+++.+..+                        .|.+||+
T Consensus       149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence            8877  6899999999988765443322112337899998776654333                        4689999


Q ss_pred             CCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEE
Q 006909          380 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS  459 (626)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  459 (626)
                      .+.+..  ......    +...+.+++|+|+| ++++++  ++.|.+||+.+........ ....+.+++|+|+|++|++
T Consensus       227 ~~~~~~--~~~~~~----~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~  296 (337)
T 1pby_B          227 ETGEMA--MREVRI----MDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL  296 (337)
T ss_dssp             TTCCEE--EEEEEE----CSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred             CCCCce--EeecCC----CCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEE
Confidence            887764  222211    23578899999998 567766  7999999987543322221 2356789999999999999


Q ss_pred             EeCCccEEEEECCCC
Q 006909          460 IGDDCRVYVWNYDEL  474 (626)
Q Consensus       460 ~s~dg~I~iwd~~~~  474 (626)
                      ++.++.|++||+.++
T Consensus       297 ~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          297 GGALGDLAAYDAETL  311 (337)
T ss_dssp             ESBSSEEEEEETTTC
T ss_pred             EcCCCcEEEEECcCC
Confidence            999999999999875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=3.1e-18  Score=174.27  Aligned_cols=202  Identities=15%  Similarity=0.170  Sum_probs=140.2

Q ss_pred             cCccceEEEEEcCCCeEEEEeC---CCcEEEeccCCCee--eEee-cCCCCeEEEEEeeCCCCEEEEEe-CCCcEEEEeC
Q 006909          266 GHKGDVLDLAWSNSNYLLSCSM---DKTVRMWQVGCNQC--LNVF-DHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGV  338 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~~l~s~s~---d~~v~iwd~~~~~~--~~~~-~~~~~v~~~~~~p~~~~~l~s~s-~dg~v~iwd~  338 (626)
                      .+...+..++|+|++.|++++.   ++.|.+|++.++..  +..+ .+...+..++|+| ++++|++++ .++.|.+|++
T Consensus        37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence            3456678899999996665554   68999999977663  3332 3667888999999 999888887 6789999999


Q ss_pred             C-CCeEE--EeccC----------CCCeEEEEEeeCCCEEEEEecCCcEEEEEcC-CCceeee-EEeeccccccCCCCeE
Q 006909          339 C-EKRVV--DWADV----------RDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDLKLE-KVDFHDRKKTSGNKIT  403 (626)
Q Consensus       339 ~-~~~~~--~~~~~----------~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~-~~~~~~~-~~~~~~~~~~~~~~i~  403 (626)
                      . .+...  .....          ...+.+++|+|+|+.+++...++.|.+|++. ++..... .....     ....+.
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-----~g~~p~  190 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-----AGFGPR  190 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC-----TTCCEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-----CCCCCc
Confidence            5 33322  21111          2248899999999966666678899999998 3333221 11111     124678


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCc--ce----eeeeecCC----CCCeEEEEEcCCCCEEE-EEeCCccEEEEECC
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVD--VI----HKFKGLPK----SGSQMSASFTTTGKHII-SIGDDCRVYVWNYD  472 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~--~~----~~~~~~~~----~~~v~~~~~sp~g~~l~-s~s~dg~I~iwd~~  472 (626)
                      .++|+|+|..++++...++.|.+|+...  ..    ..+.....    ...+..++|+|+|++|+ +...++.|.+|++.
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            8999999843555567789999998652  21    12222111    14588899999999884 55568999999986


Q ss_pred             C
Q 006909          473 E  473 (626)
Q Consensus       473 ~  473 (626)
                      .
T Consensus       271 ~  271 (347)
T 3hfq_A          271 A  271 (347)
T ss_dssp             G
T ss_pred             C
Confidence            3

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=1.1e-18  Score=196.31  Aligned_cols=243  Identities=12%  Similarity=0.117  Sum_probs=166.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      ...+++|+|||++|+++  ||+|++||+.++..                                             ..
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---------------------------------------------~~   50 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---------------------------------------------SV   50 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---------------------------------------------EE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCce---------------------------------------------EE
Confidence            45689999999999986  89999999988543                                             22


Q ss_pred             eeccCc-----cceEEEEEcCCC-eEEEEeCC---------CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909          263 ELHGHK-----GDVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       263 ~~~~h~-----~~V~~l~~s~~~-~l~s~s~d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                      .+.+|.     .....++||||| +|+.++.+         +.+.+||+.+++......+...+..++|+| +|+.|+.+
T Consensus        51 ~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SP-dG~~la~~  129 (740)
T 4a5s_A           51 FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP-VGHKLAYV  129 (740)
T ss_dssp             EECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS-STTCEEEE
T ss_pred             EEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECC-CCCEEEEE
Confidence            233332     223458899998 77777765         566799999998876666788899999999 99999988


Q ss_pred             eCCCcEEEEeCCCCeEEEecc--CCCCe-----------------EEEEEeeCCCEEEEEecCC----------------
Q 006909          328 SIDGKVRIWGVCEKRVVDWAD--VRDVI-----------------SAICYIPDGKGFIVGSITG----------------  372 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~~~~--~~~~i-----------------~~i~~sp~g~~l~~g~~dg----------------  372 (626)
                      . ++.|++||+.++....+..  +...+                 .++.|+|||+.|+.++.|.                
T Consensus       130 ~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~  208 (740)
T 4a5s_A          130 W-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL  208 (740)
T ss_dssp             E-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred             E-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence            5 6899999998877665432  22222                 3589999999999876432                


Q ss_pred             --------------------cEEEEEcCC---Cce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC----CCcE
Q 006909          373 --------------------TCHFYKASG---NDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE----DSKL  424 (626)
Q Consensus       373 --------------------~i~i~d~~~---~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~----dg~i  424 (626)
                                          .|++||+.+   +.. ....+........+...+..++|+||| +.++....    +..|
T Consensus       209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i  287 (740)
T 4a5s_A          209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVM  287 (740)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEE
T ss_pred             CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEE
Confidence                                466777766   421 111111110001244678999999998 55554432    2479


Q ss_pred             EEEeCCcce--------eeeeecCCCCCeE-----EEEEcCCCCEEE-EEeCC---ccEEEEECCCCC
Q 006909          425 RILDGVDVI--------HKFKGLPKSGSQM-----SASFTTTGKHII-SIGDD---CRVYVWNYDELC  475 (626)
Q Consensus       425 ~iwd~~~~~--------~~~~~~~~~~~v~-----~~~~sp~g~~l~-s~s~d---g~I~iwd~~~~~  475 (626)
                      .+||..+..        ..+....+...+.     ...|+|||+.|+ ..+..   ..|++||+.++.
T Consensus       288 ~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          288 DICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             EEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             EEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            999965432        2221122444443     688999999887 66643   579999998763

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=3.5e-17  Score=167.52  Aligned_cols=247  Identities=14%  Similarity=0.149  Sum_probs=167.0

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          180 HKGCIWTLKFSPDGRYLASGGED----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      |...+..++|+|||++|++++.+    +.|.+|++......                                       
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~---------------------------------------   88 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT---------------------------------------   88 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE---------------------------------------
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc---------------------------------------
Confidence            67778889999999999999886    79999998652000                                       


Q ss_pred             ccCCCceeeccCccceEEEEEcCCCeEEEEe-CCCcEEEeccCCCeeeEee----c-----------CCCCeEEEEEeeC
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVF----D-----------HHNYVTCVQFNPI  319 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s-~d~~v~iwd~~~~~~~~~~----~-----------~~~~v~~~~~~p~  319 (626)
                        ...+.....+......+++ ...+|++++ .++.|.+|++.....+...    .           +...+.+++|+| 
T Consensus        89 --~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-  164 (361)
T 3scy_A           89 --LHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-  164 (361)
T ss_dssp             --EEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-
T ss_pred             --EEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-
Confidence              0112333345556777888 334555555 6889999999754332211    1           123458899999 


Q ss_pred             CCCEEEEEe-CCCcEEEEeCCCCe-------E-------EEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCc
Q 006909          320 DDNYFISGS-IDGKVRIWGVCEKR-------V-------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGND  383 (626)
Q Consensus       320 ~~~~l~s~s-~dg~v~iwd~~~~~-------~-------~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~  383 (626)
                      +++++++++ .++.|.+|++....       +       .........+..++|+|+|+++++++ .++.|.+|++.++.
T Consensus       165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~  244 (361)
T 3scy_A          165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM  244 (361)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred             CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence            998766555 47899999876432       1       22334456688999999999888877 68999999998664


Q ss_pred             eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEEeCC--cce-eeeeecCCCCCeEEEEEcCCCCEEE
Q 006909          384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE--DSKLRILDGV--DVI-HKFKGLPKSGSQMSASFTTTGKHII  458 (626)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~--dg~i~iwd~~--~~~-~~~~~~~~~~~v~~~~~sp~g~~l~  458 (626)
                      ..... ... ....+...+..++|+|+| ++|+++..  ++.|.+|++.  +.. ...........+..++|+|+|++|+
T Consensus       245 ~~~~~-~~~-~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~  321 (361)
T 3scy_A          245 LDEIQ-TVA-ADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLL  321 (361)
T ss_dssp             EEEEE-EEE-SCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEE
T ss_pred             eEEeE-EEe-cCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEE
Confidence            42221 111 112223457899999998 56655555  5899999974  211 1221111245678999999999998


Q ss_pred             EEe-CCccEEEEECC
Q 006909          459 SIG-DDCRVYVWNYD  472 (626)
Q Consensus       459 s~s-~dg~I~iwd~~  472 (626)
                      +++ .++.|.+|+++
T Consensus       322 ~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          322 VACRDTNVIQIFERD  336 (361)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEEE
Confidence            887 57899997665

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.80  E-value=8e-18  Score=176.36  Aligned_cols=170  Identities=17%  Similarity=0.145  Sum_probs=128.8

Q ss_pred             cccCcEEEEEEcCCCCEEE----EEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          179 AHKGCIWTLKFSPDGRYLA----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~La----tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      .|.+.|++++|+|+|++||    +|+.|++|+|||+.+.....                      ...            
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~----------------------~~~------------  135 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA----------------------KQQ------------  135 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT----------------------CSS------------
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC----------------------cCC------------
Confidence            4678899999999999999    78899999999987521000                      000            


Q ss_pred             cccCCCceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                      ......+..+.+|...|.+++|+|+ + +|++++.||+|++||++++..+... .|...|.+++|+| ++++|++|+.||
T Consensus       136 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg  214 (434)
T 2oit_A          136 KRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNG  214 (434)
T ss_dssp             CCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTS
T ss_pred             cceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCC
Confidence            0000113556689999999999997 4 8999999999999999988665433 5788999999999 999999999999


Q ss_pred             cEEEEeCCCCeEEEeccC-------CCCeEEEEEeeCCCEEEEE-ecCC------cEEEEEcCCCc
Q 006909          332 KVRIWGVCEKRVVDWADV-------RDVISAICYIPDGKGFIVG-SITG------TCHFYKASGND  383 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~~~-------~~~i~~i~~sp~g~~l~~g-~~dg------~i~i~d~~~~~  383 (626)
                      +|++||++.........+       ...+.+++|++++.++++. ..+|      .+++|++....
T Consensus       215 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          215 TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             cEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence            999999984333332222       2379999999988777553 3343      38999998653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=3.2e-18  Score=176.94  Aligned_cols=249  Identities=14%  Similarity=0.098  Sum_probs=167.3

Q ss_pred             ccccccccCcEEE-----EEEcCCCCEEEEEeC-CCc--EEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCc
Q 006909          174 SQEIQAHKGCIWT-----LKFSPDGRYLASGGE-DGV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  245 (626)
Q Consensus       174 ~~~l~~H~~~V~~-----l~fspdg~~Latgs~-Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (626)
                      ...|..|...+..     .+|||||++||.++. +|.  |.+||+.++..                              
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~------------------------------   72 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA------------------------------   72 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE------------------------------
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce------------------------------
Confidence            3445667766666     899999999999887 674  77778876322                              


Q ss_pred             eeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEE--EeeCCC
Q 006909          246 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ--FNPIDD  321 (626)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~p~~~  321 (626)
                                     .....+|...+..++|+|++ .|+.++.++.|++||+.+++....+. +...+....  ++| ++
T Consensus        73 ---------------~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg  136 (388)
T 3pe7_A           73 ---------------TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DC  136 (388)
T ss_dssp             ---------------EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TS
T ss_pred             ---------------EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CC
Confidence                           22333455555567899998 88899989999999999998776665 334444343  477 88


Q ss_pred             CEEEEEe----------------------CCCcEEEEeCCCCeEEEeccCCCCeEEEEEee-CCCEEEEEecC------C
Q 006909          322 NYFISGS----------------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------G  372 (626)
Q Consensus       322 ~~l~s~s----------------------~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~d------g  372 (626)
                      .+++...                      .+..|.+||+.+++...+..+...+..+.|+| +|+.|+....+      .
T Consensus       137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~  216 (388)
T 3pe7_A          137 TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDA  216 (388)
T ss_dssp             SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSC
T ss_pred             CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcc
Confidence            8877432                      34679999999998888878888899999999 99999887754      3


Q ss_pred             cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEeCCccee-ee-eecCCC---C
Q 006909          373 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS----KLRILDGVDVIH-KF-KGLPKS---G  443 (626)
Q Consensus       373 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg----~i~iwd~~~~~~-~~-~~~~~~---~  443 (626)
                      .|.++|..+.....  +....    ....+..+.|+|||..+++++..++    .|++||+..... .+ ....+.   .
T Consensus       217 ~l~~~d~~~~~~~~--l~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~  290 (388)
T 3pe7_A          217 RMWLINEDGTNMRK--VKTHA----EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMS  290 (388)
T ss_dssp             SEEEEETTSCCCEE--SCCCC----TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEE
T ss_pred             eEEEEeCCCCceEE--eeeCC----CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeee
Confidence            77788876554321  11110    0125778899999854434444322    399999875432 12 111100   0


Q ss_pred             CeEEEEEcCCCCEEEEE---------eCCccEEEEECCCC
Q 006909          444 SQMSASFTTTGKHIISI---------GDDCRVYVWNYDEL  474 (626)
Q Consensus       444 ~v~~~~~sp~g~~l~s~---------s~dg~I~iwd~~~~  474 (626)
                      ....+.|+|||++|+..         ..+..|++||+.++
T Consensus       291 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          291 NYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             CTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred             cCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence            01123699999988854         45678999999886

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=4.8e-18  Score=172.55  Aligned_cols=235  Identities=9%  Similarity=-0.007  Sum_probs=169.2

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec
Q 006909          186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  265 (626)
Q Consensus       186 ~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (626)
                      .+++++++.++++++.++.|.+||+.+++.                                             +..+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------------------------~~~~~   38 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------------------------YKSCV   38 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------------------------EEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------------------------------EEEEe
Confidence            456788899999999999999999987432                                             22333


Q ss_pred             cCc-cceEEEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCC-------CCeEEEEEeeCCCCEEEEEeCC-----
Q 006909          266 GHK-GDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHH-------NYVTCVQFNPIDDNYFISGSID-----  330 (626)
Q Consensus       266 ~h~-~~V~~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~p~~~~~l~s~s~d-----  330 (626)
                      .+. ..+..++|+|++ .+ +++..++.|.+||+.+++.+..+...       ..+.+++|+| +++++++++.+     
T Consensus        39 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~  117 (349)
T 1jmx_B           39 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLN  117 (349)
T ss_dssp             CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECS
T ss_pred             cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccc
Confidence            222 256789999998 44 45667899999999999888776532       2378899999 99999988865     


Q ss_pred             -------CcEEEEeCCCCeE---EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc-c----
Q 006909          331 -------GKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-K----  395 (626)
Q Consensus       331 -------g~v~iwd~~~~~~---~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-~----  395 (626)
                             +.|.+||+.+++.   .....+...+.+++|+|+|+ +++++  +.|.+||+.+.+.... +..... .    
T Consensus       118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~-~~~~~~~~~~~~  193 (349)
T 1jmx_B          118 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVA-LPLRNWNRKGYS  193 (349)
T ss_dssp             SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEE-ECSTTCCCTTBC
T ss_pred             cccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceecc-ccccccCCcccc
Confidence                   8999999987442   23334455688999999999 66654  4499999987654321 111100 0    


Q ss_pred             ---------------------------------------------------------ccCCCCeEEEEEcC-CCCcEEEE
Q 006909          396 ---------------------------------------------------------KTSGNKITGIQFSR-DESQRIMI  417 (626)
Q Consensus       396 ---------------------------------------------------------~~~~~~i~~l~~s~-~~~~~l~~  417 (626)
                                                                               ......+.+++|+| ++ +++++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~  272 (349)
T 1jmx_B          194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYG  272 (349)
T ss_dssp             CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEE
T ss_pred             CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEE
Confidence                                                                     00112456788889 87 56776


Q ss_pred             EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +  ++.|.+||+.+........ ....+.+++|+|+|++|++++.++.|++||+.++
T Consensus       273 ~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          273 V--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             E--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             E--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            6  8899999987654322221 2345778999999999998888999999999875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.79  E-value=4.1e-17  Score=166.00  Aligned_cols=235  Identities=7%  Similarity=0.052  Sum_probs=168.6

Q ss_pred             CcEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          182 GCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       182 ~~V~~l~fspdg~~La-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      ..+..++|+|+|++++ ++..++.|.+||..+++..........                                    
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~------------------------------------  132 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDR------------------------------------  132 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCC------------------------------------
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCC------------------------------------
Confidence            4477899999999555 445579999999987543211000000                                    


Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEe--CCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s--~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      ...-......+.+++|+|++ ++++++  .++.|.+||..+++.+..+. +...+.+++|+| +++++++++.++.|.+|
T Consensus       133 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~  211 (353)
T 3vgz_A          133 KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITI  211 (353)
T ss_dssp             CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEE
T ss_pred             ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEE
Confidence            00000011236889999987 555554  47889999999999998887 666789999999 99999999999999999


Q ss_pred             eCCCCeEEEecc-----CCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          337 GVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       337 d~~~~~~~~~~~-----~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      |+.+++......     +...+..++|+|+|+++++++.+ +.|.+||+.+.+.... +...        ....++|+|+
T Consensus       212 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~--------~~~~~~~s~d  282 (353)
T 3vgz_A          212 DTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK-VAAP--------ESLAVLFNPA  282 (353)
T ss_dssp             ETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE-EECS--------SCCCEEEETT
T ss_pred             ECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-EEcC--------CCceEEECCC
Confidence            999988765433     35568889999999988777654 8999999987765322 2221        1256899999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                      |..++++...++.|.+||..+........ ....+..++|+|+|++|+.+..+
T Consensus       283 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          283 RNEAYVTHRQAGKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CCEEEEEECCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEcc
Confidence            85455555579999999987544333222 34478899999999988777655

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=3.1e-17  Score=168.23  Aligned_cols=248  Identities=8%  Similarity=0.026  Sum_probs=166.5

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      +...+..++|+|+|++|++++.+ .|.+|++. ++....                                         
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-----------------------------------------   75 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-----------------------------------------   75 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-----------------------------------------
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-----------------------------------------
Confidence            34468899999999999999887 89999986 432110                                         


Q ss_pred             CCceeeccCccceEEEEEcCCCe---EEEEe-------------CCCcEEEeccC-CCeeeEeec-----CCCCeEEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSNY---LLSCS-------------MDKTVRMWQVG-CNQCLNVFD-----HHNYVTCVQF  316 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~~---l~s~s-------------~d~~v~iwd~~-~~~~~~~~~-----~~~~v~~~~~  316 (626)
                        +.....+ +.+.+++|+|+|.   ++++.             .++++.+|++. .++....+.     +...+.+++|
T Consensus        76 --~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  152 (365)
T 1jof_A           76 --EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF  152 (365)
T ss_dssp             --EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE
T ss_pred             --eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE
Confidence              0011111 1244578899884   33443             68999999997 465543332     4568999999


Q ss_pred             eeCCCCEEEEEeC-CCcEEEEeCC-CCeEEEe--c---cCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcCC--Cceee
Q 006909          317 NPIDDNYFISGSI-DGKVRIWGVC-EKRVVDW--A---DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG--NDLKL  386 (626)
Q Consensus       317 ~p~~~~~l~s~s~-dg~v~iwd~~-~~~~~~~--~---~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~--~~~~~  386 (626)
                      +| ++++++++.. ++.|++||+. ++++...  .   .+...+..++|+|+|+++++++. ++.+.+|++..  +....
T Consensus       153 sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  231 (365)
T 1jof_A          153 DP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY  231 (365)
T ss_dssp             CT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            99 9998887764 6799999998 6665321  1   13567899999999999988775 68999998763  33321


Q ss_pred             --eEEe-eccccccCCC------CeEEEE-EcCCCCcEEEEEeCC-C-----cEEEEeCC-cceee--ee-ecCCCCCeE
Q 006909          387 --EKVD-FHDRKKTSGN------KITGIQ-FSRDESQRIMITSED-S-----KLRILDGV-DVIHK--FK-GLPKSGSQM  446 (626)
Q Consensus       387 --~~~~-~~~~~~~~~~------~i~~l~-~s~~~~~~l~~~s~d-g-----~i~iwd~~-~~~~~--~~-~~~~~~~v~  446 (626)
                        ..+. .......+..      .+..++ |+||| ++|+++..+ +     .|.+|++. +....  .. ...+...+.
T Consensus       232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~  310 (365)
T 1jof_A          232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH  310 (365)
T ss_dssp             EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT
T ss_pred             ccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcc
Confidence              1111 1110011111      588999 99998 566665543 3     89999975 22211  11 112344567


Q ss_pred             EEEEcC---CCCEEEEEeCC-ccEEEEECCCC
Q 006909          447 SASFTT---TGKHIISIGDD-CRVYVWNYDEL  474 (626)
Q Consensus       447 ~~~~sp---~g~~l~s~s~d-g~I~iwd~~~~  474 (626)
                      .++|+|   +|++|++++.+ +.|.+|+++..
T Consensus       311 ~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            789999   89999999865 89999998764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=4.5e-18  Score=190.94  Aligned_cols=197  Identities=11%  Similarity=0.157  Sum_probs=143.4

Q ss_pred             EEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCC----CeEEEEEeeCCCCEEEEEeC---------CCcEEEEeCC
Q 006909          273 DLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN----YVTCVQFNPIDDNYFISGSI---------DGKVRIWGVC  339 (626)
Q Consensus       273 ~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~s~s~---------dg~v~iwd~~  339 (626)
                      +++|+|++.++..+.|++|++||+.+++....+.+..    .+.+++|+| ++++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6799999977777789999999999999887776433    389999999 9999998876         6899999999


Q ss_pred             CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc----cCC---------CCeEEEE
Q 006909          340 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK----TSG---------NKITGIQ  406 (626)
Q Consensus       340 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~---------~~i~~l~  406 (626)
                      +++..........+..++|+|||+.|+.+. ++.|++|++.++....  +...+...    ++.         ....+++
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~--l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ--ITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE--CCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE--EecCCCcCCeEcccccceeeeecccCcccEE
Confidence            988732222335688999999999999885 7899999998765432  11111100    000         1225899


Q ss_pred             EcCCCCcEEEEEeCCC----------------------------------cEEEEeCCccee----eee----ecCCCCC
Q 006909          407 FSRDESQRIMITSEDS----------------------------------KLRILDGVDVIH----KFK----GLPKSGS  444 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg----------------------------------~i~iwd~~~~~~----~~~----~~~~~~~  444 (626)
                      |+||| ++|++++.|.                                  .|++||+.....    .+.    ...+...
T Consensus       176 wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          176 WSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             ECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             ECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            99998 6788776542                                  788999875432    111    1236667


Q ss_pred             eEEEEEcCCCCEEEEEeCC----ccEEEEE----CCCC
Q 006909          445 QMSASFTTTGKHIISIGDD----CRVYVWN----YDEL  474 (626)
Q Consensus       445 v~~~~~sp~g~~l~s~s~d----g~I~iwd----~~~~  474 (626)
                      +..++|+||++++++....    ..|++||    +.++
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g  292 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW  292 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence            8999999998877775432    3588899    6665

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=2.2e-15  Score=148.61  Aligned_cols=246  Identities=10%  Similarity=0.158  Sum_probs=176.3

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .+|-..+.+++++|+|+++++...++.|.+||... .... .+..                                   
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~-~~~~-----------------------------------   68 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKF-QFGE-----------------------------------   68 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEE-EECC-----------------------------------
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEE-Eecc-----------------------------------
Confidence            35667899999999999988888899999999763 1110 0000                                   


Q ss_pred             CCCceeeccCccceEEEEE-cCCCeEEEEeC--CCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          258 ESPLQELHGHKGDVLDLAW-SNSNYLLSCSM--DKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~-s~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                         .....+|...+..+++ .+++.|+.+..  ++.|.+|| .+++.+..+.  +...+.+++++| +++++++...++.
T Consensus        69 ---~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~  143 (286)
T 1q7f_A           69 ---CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMR  143 (286)
T ss_dssp             ---BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred             ---cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCE
Confidence               0001235567889999 46776555553  78999999 5677776664  445789999999 8888888778899


Q ss_pred             EEEEeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          333 VRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       333 v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      |.+||........+.  .....+..++++|+|+.+++...++.|++||..+...  ..+...+    +...+.+++++++
T Consensus       144 i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~g----~~~~p~~i~~d~~  217 (286)
T 1q7f_A          144 VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGGEG----ITNYPIGVGINSN  217 (286)
T ss_dssp             EEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESCTT----TSCSEEEEEECTT
T ss_pred             EEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE--EEEccCC----ccCCCcEEEECCC
Confidence            999997654443332  3345689999999998777777899999999865322  1221111    1256899999999


Q ss_pred             CCcEEEEEeCCC-cEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          411 ESQRIMITSEDS-KLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       411 ~~~~l~~~s~dg-~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      | +++++...++ .|.+||... ....+........+.+++++|+|+++++ +.|++|++|++..
T Consensus       218 G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          218 G-EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             C-CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             C-CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            8 6777777775 999999653 3444444333445789999999987777 5799999999865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.74  E-value=1.4e-15  Score=155.40  Aligned_cols=202  Identities=11%  Similarity=0.102  Sum_probs=134.1

Q ss_pred             CccceEEEEEcCCC-eEEEEeCC----CcEEEeccCC--Ceee--Eeec-CCCCeEEEEEeeCCCCEEEEEe-CCCcEEE
Q 006909          267 HKGDVLDLAWSNSN-YLLSCSMD----KTVRMWQVGC--NQCL--NVFD-HHNYVTCVQFNPIDDNYFISGS-IDGKVRI  335 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~s~s~d----~~v~iwd~~~--~~~~--~~~~-~~~~v~~~~~~p~~~~~l~s~s-~dg~v~i  335 (626)
                      +...+..++|+|++ +|++++.+    +.|.+|++..  +...  .... +......+++   +++++++++ .++.|.+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence            56777889999998 68888775    7999998865  4432  2232 4456677777   567666665 5789999


Q ss_pred             EeCCCCeEE-Ee------cc--------CCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCce----e-eeEE-eecc
Q 006909          336 WGVCEKRVV-DW------AD--------VRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL----K-LEKV-DFHD  393 (626)
Q Consensus       336 wd~~~~~~~-~~------~~--------~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~----~-~~~~-~~~~  393 (626)
                      |++.....+ ..      .+        +...+.+++|+|+|+++++++ .++.|.+|++.....    . +... ....
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            998743221 11      11        123458899999999776655 478999999876542    1 1100 0000


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEeCCcce----eeeee-cCCCCCeEEEEEcCCCCEEEEEeCC--cc
Q 006909          394 RKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVDVI----HKFKG-LPKSGSQMSASFTTTGKHIISIGDD--CR  465 (626)
Q Consensus       394 ~~~~~~~~i~~l~~s~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~d--g~  465 (626)
                      ........+..++|+|+| +++++++ .++.|.+|++....    ..+.. ..+...+..++|+|||++|+++..+  +.
T Consensus       205 ~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~  283 (361)
T 3scy_A          205 FKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG  283 (361)
T ss_dssp             EECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred             eecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence            011123567899999998 5665555 68999999976322    11211 2233457899999999999776654  89


Q ss_pred             EEEEECC
Q 006909          466 VYVWNYD  472 (626)
Q Consensus       466 I~iwd~~  472 (626)
                      |.+|+++
T Consensus       284 i~v~~~~  290 (361)
T 3scy_A          284 VAIFKVD  290 (361)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            9999986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.72  E-value=1.8e-16  Score=173.33  Aligned_cols=236  Identities=6%  Similarity=0.034  Sum_probs=170.5

Q ss_pred             ccccccc-CcEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          175 QEIQAHK-GCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       175 ~~l~~H~-~~V~~l~fspdg~~Latgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      +.+..|. ..|.+++|||| +++++++.   +...+||.+.....                                   
T Consensus        57 ~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~-----------------------------------  100 (582)
T 3o4h_A           57 VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP-----------------------------------  100 (582)
T ss_dssp             EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST-----------------------------------
T ss_pred             EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC-----------------------------------
Confidence            3344555 68999999999 88887775   45567766543000                                   


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                             +... .+..+ ..+...+|+|++  .+++++.++.+.+||+.+++......+..  .+++|+| +|+++++++
T Consensus       101 -------g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~  168 (582)
T 3o4h_A          101 -------GEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLG  168 (582)
T ss_dssp             -------TCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEE
T ss_pred             -------Cccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEE
Confidence                   0011 11111 123345677665  44555555556699999998776665544  8899999 999999888


Q ss_pred             CC----CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC--cEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          329 ID----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       329 ~d----g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      .+    +.|++||+.+++...+..+...+..++|+|||+.|+++..++  .|++||+.++...  ...      .+...+
T Consensus       169 ~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~------~~~~~~  240 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLE------LPSKDF  240 (582)
T ss_dssp             EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECC------CSCSHH
T ss_pred             EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--Ecc------CCCcCh
Confidence            77    789999999999888888889999999999999999888888  8999999887654  111      112344


Q ss_pred             EEEE--------EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc---cEEEEEC
Q 006909          403 TGIQ--------FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNY  471 (626)
Q Consensus       403 ~~l~--------~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg---~I~iwd~  471 (626)
                      ..+.        |+||| .++++++.++++++|++  ... ..  ...+.+.+++|+ +++++++++.+.   .|++|+.
T Consensus       241 ~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~-~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          241 SSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER-VE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             HHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE-EC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             hhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe-ec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence            4455        99998 89999999999999998  221 11  234678899999 999999888774   5777776


Q ss_pred             CC
Q 006909          472 DE  473 (626)
Q Consensus       472 ~~  473 (626)
                      .+
T Consensus       314 ~~  315 (582)
T 3o4h_A          314 GE  315 (582)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.72  E-value=2.9e-16  Score=159.28  Aligned_cols=189  Identities=8%  Similarity=0.058  Sum_probs=137.5

Q ss_pred             EEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCC--CeEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCeEEEeccC
Q 006909          274 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVDWADV  349 (626)
Q Consensus       274 l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~  349 (626)
                      +++++++ .+++++.+++|.+||+.+++.+..+....  .+..++|+| +++++ +++..++.|.+||+.+++.......
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            4566766 78889999999999999999988886555  688999999 88765 4555789999999998887654433


Q ss_pred             C-------CCeEEEEEeeCCCEEEEEecC------------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          350 R-------DVISAICYIPDGKGFIVGSIT------------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       350 ~-------~~i~~i~~sp~g~~l~~g~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      .       ..+..++|+|+|+++++++.+            +.|.+||+.++...........     ...+.+++|+|+
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~s~d  158 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-----PRQVYLMRAADD  158 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-----CSSCCCEEECTT
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-----CCcccceeECCC
Confidence            2       237889999999999998865            8999999987543221111111     245888999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcce--eeeeecC------------------------------------------------
Q 006909          411 ESQRIMITSEDSKLRILDGVDVI--HKFKGLP------------------------------------------------  440 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~------------------------------------------------  440 (626)
                      | + +++++  +.|.+||..+..  ..+....                                                
T Consensus       159 g-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          159 G-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             S-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             C-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            8 4 45543  349999976432  2221110                                                


Q ss_pred             ------------------CCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCC
Q 006909          441 ------------------KSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       441 ------------------~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                                        ....+..++|+| +|++++++  ++.|++||+.++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~  285 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR  285 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence                              011345678889 99999988  889999999876

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.70  E-value=2.1e-16  Score=163.43  Aligned_cols=236  Identities=11%  Similarity=0.103  Sum_probs=156.7

Q ss_pred             CcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          182 GCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      ..+..++|||||++||.+...   ..|.+||+.++..                                           
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-------------------------------------------   72 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-------------------------------------------   72 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-------------------------------------------
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-------------------------------------------
Confidence            347788999999998877553   3678888876321                                           


Q ss_pred             CCceeeccCccc-eEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEE-------------------EEE
Q 006909          259 SPLQELHGHKGD-VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC-------------------VQF  316 (626)
Q Consensus       259 ~~~~~~~~h~~~-V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~-------------------~~~  316 (626)
                         ..+..+... ...+.|+|++ .|+.++.++.|.+||+.+++...... +......                   +.|
T Consensus        73 ---~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~  149 (396)
T 3c5m_A           73 ---VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW  149 (396)
T ss_dssp             ---EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred             ---EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccccccc
Confidence               111222222 2337899998 78888888899999999887766554 3332222                   245


Q ss_pred             eeCCCCEEEEE-----eCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee-CCCEEEEEecC------CcEEEEEcCCCce
Q 006909          317 NPIDDNYFISG-----SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GTCHFYKASGNDL  384 (626)
Q Consensus       317 ~p~~~~~l~s~-----s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~d------g~i~i~d~~~~~~  384 (626)
                      +| +++.++.+     ..+..|.+||+.+++......+...+..+.|+| +++.|+..+.+      ..|.+||+.+...
T Consensus       150 sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (396)
T 3c5m_A          150 QP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV  228 (396)
T ss_dssp             CC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred             CC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence            56 66655543     345689999999988777777778899999999 88877776654      3588888865542


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEeCCccee-eeeecCCCCCeEEEEEcC-CCCEE
Q 006909          385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILDGVDVIH-KFKGLPKSGSQMSASFTT-TGKHI  457 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----g~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp-~g~~l  457 (626)
                      ..  +...    .....+..+.|+|+| ++|+.++.+     +.|++||+.+... .+...  . ... +.|+| +|+++
T Consensus       229 ~~--l~~~----~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-~~~-~~~s~~dg~~l  297 (396)
T 3c5m_A          229 RK--IKEH----AEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--P-PCS-HLMSNFDGSLM  297 (396)
T ss_dssp             EE--SSCC----CTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--C-SEE-EEEECSSSSEE
T ss_pred             eE--eecc----CCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeeeC--C-CCC-CCccCCCCceE
Confidence            21  1101    001357889999998 455555433     4499999764432 22221  1 233 88999 99998


Q ss_pred             EEEe----------------CCccEEEEECCCCC
Q 006909          458 ISIG----------------DDCRVYVWNYDELC  475 (626)
Q Consensus       458 ~s~s----------------~dg~I~iwd~~~~~  475 (626)
                      ++++                .+..|++||+.++.
T Consensus       298 ~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          298 VGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             EEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             EEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            8765                34789999998763

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.70  E-value=6.8e-16  Score=159.38  Aligned_cols=297  Identities=9%  Similarity=0.004  Sum_probs=176.3

Q ss_pred             CCCceeeccCccceEE-----EEEcCCC-eEEEEeC-CCc--EEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEE
Q 006909          258 ESPLQELHGHKGDVLD-----LAWSNSN-YLLSCSM-DKT--VRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~-----l~~s~~~-~l~s~s~-d~~--v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~  327 (626)
                      +..+..+..|......     .+|+|+| +|+.++. ++.  |.+||+.+++...... +...+..+.|+| +++.|+.+
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~   98 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYV   98 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEE
T ss_pred             CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEE
Confidence            3445566666655555     7899998 6777776 664  8888999988877665 333444678999 99999999


Q ss_pred             eCCCcEEEEeCCCCeEEEeccC-CCCeEEE--EEeeCCCEEEEEe----------------------cCCcEEEEEcCCC
Q 006909          328 SIDGKVRIWGVCEKRVVDWADV-RDVISAI--CYIPDGKGFIVGS----------------------ITGTCHFYKASGN  382 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~~~~~-~~~i~~i--~~sp~g~~l~~g~----------------------~dg~i~i~d~~~~  382 (626)
                      +.++.|++||+.+++....... ...+...  .++|+++.++...                      .+..|.+||+.++
T Consensus        99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A           99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence            9999999999999876654433 3333333  3489999887432                      3467999999877


Q ss_pred             ceeeeEEeeccccccCCCCeEEEEEcC-CCCcEEEEEeCC------CcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCC
Q 006909          383 DLKLEKVDFHDRKKTSGNKITGIQFSR-DESQRIMITSED------SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTG  454 (626)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~~l~~~s~d------g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g  454 (626)
                      +...  +...      ...+..++|+| +| ..|+....+      ..|.++|.... ...+........+..+.|+|||
T Consensus       179 ~~~~--l~~~------~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg  249 (388)
T 3pe7_A          179 ESTV--ILQE------NQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDG  249 (388)
T ss_dssp             CEEE--EEEE------SSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTS
T ss_pred             ceEE--eecC------CccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCC
Confidence            5422  2211      25689999999 87 667666553      37888886532 2222221111357788999999


Q ss_pred             CEEEEEeCC-----ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCC------CccccCcc
Q 006909          455 KHIISIGDD-----CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS------SLRDCSQK  523 (626)
Q Consensus       455 ~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~------~~~~~~~~  523 (626)
                      +.|+..+.+     ..|++||+.++........... ......+++.    +|+|+|..++....+      .....+.+
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~----~~spdg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-SHLMSNYDGS----LMVGDGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-EEEEECTTSS----EEEEEECCC------------CCCCEEEE
T ss_pred             CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-eeeeecCCCC----eEccCCCcceeEeeeccccccCCCCEEEE
Confidence            988665432     2499999988742111111100 0000011111    244444444322111      11122333


Q ss_pred             ccccCCCC-cccCCCc-----------ccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909          524 WDNLETAP-WIRDSER-----------FSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  569 (626)
Q Consensus       524 w~~~~~~~-~~~~~~~-----------~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~  569 (626)
                      |+...... .+..+..           .+..++|||||+.++..+..++...+|.+..
T Consensus       325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          325 FNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             EETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             EeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence            33321111 1111111           4678899999998887665466677775443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=2.3e-15  Score=167.11  Aligned_cols=247  Identities=9%  Similarity=-0.007  Sum_probs=170.7

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latg--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      .+.+.+|...|..++|++++-++++.  +.++...||....+.                                     
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------------------   58 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-------------------------------------   58 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-------------------------------------
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-------------------------------------
Confidence            45577899999999999887777777  568899999864311                                     


Q ss_pred             ccccccCCCceeeccCccceE---------EEEEc--CCC-e-EEEEeC-CCcEEEeccC--C-CeeeEeec-----CCC
Q 006909          252 EVFQIEESPLQELHGHKGDVL---------DLAWS--NSN-Y-LLSCSM-DKTVRMWQVG--C-NQCLNVFD-----HHN  309 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~---------~l~~s--~~~-~-l~s~s~-d~~v~iwd~~--~-~~~~~~~~-----~~~  309 (626)
                              ....+..|...+.         ...|+  ||| . |+.++. +..|.+|++.  + +.......     +..
T Consensus        59 --------~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~  130 (662)
T 3azo_A           59 --------AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGL  130 (662)
T ss_dssp             --------CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCE
T ss_pred             --------CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCc
Confidence                    1222233333333         44555  887 6 565543 5667777776  3 54443333     456


Q ss_pred             CeEEEEEeeCCCCEEEEEeCC----------CcEEEEeCCC------CeEEEec-cCCCCeEEEEEeeCCCEEEEEecCC
Q 006909          310 YVTCVQFNPIDDNYFISGSID----------GKVRIWGVCE------KRVVDWA-DVRDVISAICYIPDGKGFIVGSITG  372 (626)
Q Consensus       310 ~v~~~~~~p~~~~~l~s~s~d----------g~v~iwd~~~------~~~~~~~-~~~~~i~~i~~sp~g~~l~~g~~dg  372 (626)
                      .+..++|+| +++.|++++.+          ..|++||+.+      ++...+. .+...+..++|+|||++|+.++.++
T Consensus       131 ~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~  209 (662)
T 3azo_A          131 RWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDH  209 (662)
T ss_dssp             EEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred             cccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCC
Confidence            789999999 99999998877          5899999998      7777766 6667888899999999999887553


Q ss_pred             --------cEEEEEcC-CCce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEeCCcce-eeeeec
Q 006909          373 --------TCHFYKAS-GNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVI-HKFKGL  439 (626)
Q Consensus       373 --------~i~i~d~~-~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg--~i~iwd~~~~~-~~~~~~  439 (626)
                              .|++||+. ++.. ....+...     +...+..+.|+|||. +++++..++  .|.+||..... ..+.. 
T Consensus       210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-----~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~-  282 (662)
T 3azo_A          210 PRMPWEGTELKTARVTEDGRFADTRTLLGG-----PEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCR-  282 (662)
T ss_dssp             TCCTTTCEEEEEEEECTTSCEEEEEEEEEE-----TTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSC-
T ss_pred             CCCCCCCcEEEEEEECCCCcccccEEeCCC-----CCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccc-
Confidence                    79999998 4421 11122111     135789999999984 888888888  66666653322 11111 


Q ss_pred             CCCCC--------eEEEEEcCCCCEEEEEeCCccEEEE--ECCCC
Q 006909          440 PKSGS--------QMSASFTTTGKHIISIGDDCRVYVW--NYDEL  474 (626)
Q Consensus       440 ~~~~~--------v~~~~~sp~g~~l~s~s~dg~I~iw--d~~~~  474 (626)
                      .+...        +..++|+|+++++++++. +.++||  |+.++
T Consensus       283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~  326 (662)
T 3azo_A          283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG  326 (662)
T ss_dssp             CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred             ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence            11111        467899999999999998 999999  55544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.69  E-value=4.5e-15  Score=151.62  Aligned_cols=249  Identities=12%  Similarity=0.122  Sum_probs=165.4

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCC
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  244 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (626)
                      .++..+..+  .++|+|||++|+++..          +++|.+||..+.+..                            
T Consensus        45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~----------------------------   94 (361)
T 2oiz_A           45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE----------------------------   94 (361)
T ss_dssp             EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE----------------------------
T ss_pred             EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE----------------------------
Confidence            345555555  8999999999998862          678999998764321                            


Q ss_pred             ceeecCCccccccCCCceeec------cCccceEEEEEcCCC-eEEEEeC--CCcEEEeccCCCeeeEe-ecCCCCeEEE
Q 006909          245 VPVVIPDEVFQIEESPLQELH------GHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCV  314 (626)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~s~~~-~l~s~s~--d~~v~iwd~~~~~~~~~-~~~~~~v~~~  314 (626)
                                       ..+.      .+......++++|+| +|+++..  +++|.+||+.+++.+.. +..... ..+
T Consensus        95 -----------------~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v  156 (361)
T 2oiz_A           95 -----------------KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSV  156 (361)
T ss_dssp             -----------------EEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEE
T ss_pred             -----------------EEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-cee
Confidence                             1111      122456678999998 6766653  68999999999999888 765443 335


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEE------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909          315 QFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  387 (626)
Q Consensus       315 ~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~  387 (626)
                      .+.|.....+++.+.||.+.+|+... ++...      ..........+.++|++..++..+.++.+.++|+........
T Consensus       157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~  236 (361)
T 2oiz_A          157 IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD  236 (361)
T ss_dssp             EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE
T ss_pred             EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceec
Confidence            67773447888899999999999865 55441      111111122334568888888888899999999976543322


Q ss_pred             -EEeecccccc----CCCCeEEEEEcCCCCcEEEEEe----------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC
Q 006909          388 -KVDFHDRKKT----SGNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT  452 (626)
Q Consensus       388 -~~~~~~~~~~----~~~~i~~l~~s~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  452 (626)
                       .+........    .......++|+|++...+++..          ..+.|.+||+.+....-....+.  +.+++|+|
T Consensus       237 ~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp  314 (361)
T 2oiz_A          237 GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ  314 (361)
T ss_dssp             EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET
T ss_pred             ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC
Confidence             1111100000    0011223789999754444433          13589999987654443333343  89999999


Q ss_pred             CCCEEEEEeCCccEEEEECCCC
Q 006909          453 TGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       453 ~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +|++|++++. +.|.+||..++
T Consensus       315 dg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          315 QRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             TTTEEEEECS-SCEEEEECSSS
T ss_pred             CCCEEEEeCC-CeEEEEECCCC
Confidence            9999999887 99999999886

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.68  E-value=7.3e-15  Score=150.49  Aligned_cols=229  Identities=8%  Similarity=0.076  Sum_probs=150.1

Q ss_pred             ccceEEEEEcCCC-eEEEEeCCCcEEEeccC-CCeeeEeecC--CCCeEEEEEeeCCCCE--EEEEe-------------
Q 006909          268 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQCLNVFDH--HNYVTCVQFNPIDDNY--FISGS-------------  328 (626)
Q Consensus       268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~-~~~~~~~~~~--~~~v~~~~~~p~~~~~--l~s~s-------------  328 (626)
                      ...+..++|+|++ +|++++.+ .|.+|++. +++......+  ...+.+++|+| ++++  ++++.             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeec
Confidence            3467889999998 68888887 99999997 7776554432  13456689999 8884  44553             


Q ss_pred             CCCcEEEEeCC-CCeEEEec-----cCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcC-CCceeee-EEeeccccccCC
Q 006909          329 IDGKVRIWGVC-EKRVVDWA-----DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS-GNDLKLE-KVDFHDRKKTSG  399 (626)
Q Consensus       329 ~dg~v~iwd~~-~~~~~~~~-----~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~-~~~~~~~-~~~~~~~~~~~~  399 (626)
                      .++++.+|++. .+++....     .+...+.+++|+|+|++++++.. ++.|++|++. +++.... .....    .+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~----~~g  192 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP----DPG  192 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS----STT
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC----CCC
Confidence            68999999997 45543222     24567999999999998887764 6799999998 5544221 11111    123


Q ss_pred             CCeEEEEEcCCCCcEEEEEe-CCCcEEEEeCC--ccee-----eeeecCC-----CC------CeEEEE-EcCCCCEEEE
Q 006909          400 NKITGIQFSRDESQRIMITS-EDSKLRILDGV--DVIH-----KFKGLPK-----SG------SQMSAS-FTTTGKHIIS  459 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s-~dg~i~iwd~~--~~~~-----~~~~~~~-----~~------~v~~~~-~sp~g~~l~s  459 (626)
                      ..+..++|+|+| +++++++ .++.|.+|+..  +...     .+.....     ..      .+..++ |+|||++|++
T Consensus       193 ~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v  271 (365)
T 1jof_A          193 DHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             CCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence            568999999998 5666665 47899999753  2211     1222111     11      478999 9999999887


Q ss_pred             EeCC-c-----cEEEEECC-CCCCCC----CCccCCccceeeecc---CCcEEEEecC
Q 006909          460 IGDD-C-----RVYVWNYD-ELCFPS----SKQKNSVRSCEHFFS---EGVSVAVQWP  503 (626)
Q Consensus       460 ~s~d-g-----~I~iwd~~-~~~~~~----~~~~~~~~~~~~~~~---~g~~~av~~s  503 (626)
                      ++.+ +     .|.+|+++ ++....    ..........++|+|   +|..++++-.
T Consensus       272 ~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~  329 (365)
T 1jof_A          272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence            6543 2     89999996 332211    000111223345667   6666666543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=2.9e-14  Score=143.72  Aligned_cols=200  Identities=11%  Similarity=0.075  Sum_probs=140.8

Q ss_pred             cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe-eeEeec----------CCCCeEEEEEeeCCCCEEEEEe-CCCc
Q 006909          266 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD----------HHNYVTCVQFNPIDDNYFISGS-IDGK  332 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~-~~~~~~----------~~~~v~~~~~~p~~~~~l~s~s-~dg~  332 (626)
                      ++-.....+++++++ .+++...++.|++||..... .+..+.          +......++++|.+++++++.+ .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            344678899999988 66677778999999986542 444442          2336899999985577777775 6899


Q ss_pred             EEEEeCCCCeEEEecc-----------CCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          333 VRIWGVCEKRVVDWAD-----------VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~-----------~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      |++||.. +.......           .-.....++++|+ +..+++...++.|++|+..+++... .+..    ..+..
T Consensus       168 I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-~~~~----~~~~~  241 (329)
T 3fvz_A          168 IVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-EIKH----ASFGR  241 (329)
T ss_dssp             EEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECC----TTTTT
T ss_pred             EEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-EEec----cccCC
Confidence            9999954 44443222           1234889999998 7777777788999999998555432 2211    12346


Q ss_pred             CeEEEEEcCCCCcEEEEE-------eCCCcEEEEeCCcceeeeee---cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          401 KITGIQFSRDESQRIMIT-------SEDSKLRILDGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~-------s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      .+..++|+| + ..+.+.       ..+..|++||..+.......   ..+...+..++++|+|.++++...++.|++|+
T Consensus       242 ~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          242 NVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             CEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             CcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            788999999 3 333333       33458999997654333222   23556789999999998888888899999999


Q ss_pred             CCC
Q 006909          471 YDE  473 (626)
Q Consensus       471 ~~~  473 (626)
                      +..
T Consensus       320 ~~~  322 (329)
T 3fvz_A          320 LTE  322 (329)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=5.2e-13  Score=134.60  Aligned_cols=242  Identities=10%  Similarity=0.070  Sum_probs=164.0

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      ..+.+|...+.+++|+|+|++++++..++.|.+||..++..                                       
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---------------------------------------   78 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---------------------------------------   78 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------------------------------
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---------------------------------------
Confidence            34556777889999999999888888899999999876321                                       


Q ss_pred             cccCCCceeeccCccceEEEEEcCCCeEE-EEeCC----CcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEE
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSNYLL-SCSMD----KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~~l~-s~s~d----~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s  326 (626)
                            ......+...+.++++++++.++ +...+    +.|.+||..++.....+.   ....+.+++++| +++++++
T Consensus        79 ------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~  151 (333)
T 2dg1_A           79 ------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFT  151 (333)
T ss_dssp             ------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEE
T ss_pred             ------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEE
Confidence                  11112355779999999998544 44444    589999998876653332   445789999999 8888877


Q ss_pred             EeC------CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCceeeeEE--eecccccc
Q 006909          327 GSI------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKV--DFHDRKKT  397 (626)
Q Consensus       327 ~s~------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~  397 (626)
                      ...      .+.|..+|..+++..........+..++|+|+|+.++++ +.++.|.+|++..........  ........
T Consensus       152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  231 (333)
T 2dg1_A          152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG  231 (333)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred             eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence            653      356777777766665544444568899999999866554 557899999996421111110  00000001


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecC----CCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLP----KSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~----~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                       ...+..++++++| .++++...++.|.+||.... ...+....    +...+.+++|+|+++.|+.++.++
T Consensus       232 -~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          232 -HEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             -SSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             -CCCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence             1467889999997 67777777899999997532 23333211    112588999999988777665553

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=2e-13  Score=135.22  Aligned_cols=239  Identities=10%  Similarity=0.060  Sum_probs=168.8

Q ss_pred             cccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          175 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      ..+..+.....+++|+|+|+ +++++..++.|..|+..++                                        
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----------------------------------------   60 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----------------------------------------   60 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------------------------------------
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------------------------------------
Confidence            34445667788999999998 7888888999999998762                                        


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCCeEEEE-eCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEE
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~  327 (626)
                             ...+..+...+.++++++++.|+.+ ..++.|.+||..+++......     ....+..++++| +++++++.
T Consensus        61 -------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd  132 (296)
T 3e5z_A           61 -------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSD  132 (296)
T ss_dssp             -------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEE
T ss_pred             -------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEEC
Confidence                   2334446677899999999854444 456899999998887654432     123567899999 99988873


Q ss_pred             ----e-------------CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcC-CCce-eeeE
Q 006909          328 ----S-------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDL-KLEK  388 (626)
Q Consensus       328 ----s-------------~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~-~~~~-~~~~  388 (626)
                          +             ..+.|..++.. ++.............++|+|+|+.+++.+.++.|.+|++. .+.. ....
T Consensus       133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~  211 (296)
T 3e5z_A          133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV  211 (296)
T ss_dssp             CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE
T ss_pred             CccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe
Confidence                2             13467777766 6665556666778999999999999777778999999997 3332 1111


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEE-cCCCCEEEEEeCCccE
Q 006909          389 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASF-TTTGKHIISIGDDCRV  466 (626)
Q Consensus       389 ~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~-sp~g~~l~s~s~dg~I  466 (626)
                      . +..    ....+.+++++++| +++++.  ++.|.+||... ....+..  +.. +.+++| +|+++.|++++.+ .+
T Consensus       212 ~-~~~----~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~-~l  279 (296)
T 3e5z_A          212 H-FTV----EPGKTDGLRVDAGG-LIWASA--GDGVHVLTPDGDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVST-EF  279 (296)
T ss_dssp             E-ECC----SSSCCCSEEEBTTS-CEEEEE--TTEEEEECTTSCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETT-EE
T ss_pred             E-eeC----CCCCCCeEEECCCC-CEEEEc--CCeEEEECCCCCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCC-eE
Confidence            1 111    23556789999998 455444  88999999763 2233333  344 889999 6899999988876 45


Q ss_pred             EEEECCCC
Q 006909          467 YVWNYDEL  474 (626)
Q Consensus       467 ~iwd~~~~  474 (626)
                      ..++..+.
T Consensus       280 ~~~~~~~~  287 (296)
T 3e5z_A          280 WSIETNVR  287 (296)
T ss_dssp             EEEECSCC
T ss_pred             EEEEcccc
Confidence            55566554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=8.1e-14  Score=140.59  Aligned_cols=235  Identities=13%  Similarity=0.115  Sum_probs=165.9

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      ..|+++.|+|++..++..+.++.++.|.-                                                ...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~   37 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA------------------------------------------------EPW   37 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC------------------------------------------------EEE
T ss_pred             cccceeeecCCccceeEEeecccCccccc------------------------------------------------cee
Confidence            34777888888877777777888888821                                                224


Q ss_pred             eeeccCccceEEEEEcCCCe-EEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCC----CcEEE
Q 006909          262 QELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID----GKVRI  335 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~~-l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d----g~v~i  335 (626)
                      ..+..+...+.+++|++++. ++++..++.|.+||..+++..... .+...+.+++++| +++++++...+    +.|.+
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEE
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEE
Confidence            45556667789999999884 456778899999999988776554 4667899999999 88888877666    68999


Q ss_pred             EeCCCCeEEEec---cCCCCeEEEEEeeCCCEEEEEec------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          336 WGVCEKRVVDWA---DVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       336 wd~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      ||..++......   .....+..++++|+|+.+++...      .+.|..++..+.....  +...      ...+..++
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~------~~~~~~i~  188 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQN------ISVANGIA  188 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEE------ESSEEEEE
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecC------CCcccceE
Confidence            999887755322   23457899999999987766543      2455566555433321  1111      14578999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCCc---ceeee-----eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          407 FSRDESQRIMITSEDSKLRILDGVD---VIHKF-----KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~~---~~~~~-----~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      |+|+|..++++.+.++.|.+||...   ....+     ........+..++++++|+++++...++.|.+||.+.
T Consensus       189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g  263 (333)
T 2dg1_A          189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  263 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence            9999843455556788999999742   12111     1111124678899999999888888889999999854

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=2.1e-13  Score=152.50  Aligned_cols=242  Identities=12%  Similarity=0.120  Sum_probs=167.3

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      +|+..+..++|||||++||.++.++     .|++||+.++...                                     
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~-------------------------------------  164 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL-------------------------------------  164 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-------------------------------------
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence            4666799999999999999876543     8999999875321                                     


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCc----------------EEEeccCCCeee--Eeec---CCCCe
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT----------------VRMWQVGCNQCL--NVFD---HHNYV  311 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~----------------v~iwd~~~~~~~--~~~~---~~~~v  311 (626)
                              .... ....+..++|+||| .|+.++.++.                |++|++.+++..  ..+.   +...+
T Consensus       165 --------~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~  235 (710)
T 2xdw_A          165 --------PDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM  235 (710)
T ss_dssp             --------EEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             --------cccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence                    1111 11236679999998 7888777766                999999887632  2222   45568


Q ss_pred             EEEEEeeCCCCEEEEEeC-----CCcEEEEeCCC------C--eEEEeccCCCCeEEEEEeeCCCEEEEEecC----CcE
Q 006909          312 TCVQFNPIDDNYFISGSI-----DGKVRIWGVCE------K--RVVDWADVRDVISAICYIPDGKGFIVGSIT----GTC  374 (626)
Q Consensus       312 ~~~~~~p~~~~~l~s~s~-----dg~v~iwd~~~------~--~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d----g~i  374 (626)
                      ..+.|+| ++++|+.++.     +..|++||+.+      +  ....+..+...+.. .|+|+|+.|+..+..    +.|
T Consensus       236 ~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l  313 (710)
T 2xdw_A          236 GGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL  313 (710)
T ss_dssp             EEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEE
T ss_pred             EEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEE
Confidence            8999999 9999888765     56899999976      4  45555566555554 588999988877654    369


Q ss_pred             EEEEcCCCce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEeCCcc--eeeeeecCCCCCeEEEE
Q 006909          375 HFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--LRILDGVDV--IHKFKGLPKSGSQMSAS  449 (626)
Q Consensus       375 ~i~d~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~--i~iwd~~~~--~~~~~~~~~~~~v~~~~  449 (626)
                      .+||+.+... ....+..+.    ....+..+.|++++ .++++...++.  |.+|+..+.  ...+..  +.+.+..++
T Consensus       314 ~~~d~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~  386 (710)
T 2xdw_A          314 INIDFTDPEESKWKVLVPEH----EKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGALLKIFPL--EVGSVVGYS  386 (710)
T ss_dssp             EEEETTSCCGGGCEEEECCC----SSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCEEEEECC--CSSEEEEEE
T ss_pred             EEEeCCCCCcccceeccCCC----CCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCEEEecCC--CCceEEEEe
Confidence            9999877642 112222111    01357889998665 67888888874  566676333  333333  466788899


Q ss_pred             EcCCCCEEEEE-e---CCccEEEEECCCCC
Q 006909          450 FTTTGKHIISI-G---DDCRVYVWNYDELC  475 (626)
Q Consensus       450 ~sp~g~~l~s~-s---~dg~I~iwd~~~~~  475 (626)
                      ++|+++.++.. +   ..++|++||+.++.
T Consensus       387 ~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          387 GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             cCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            99999766633 2   34789999998764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.59  E-value=1.8e-13  Score=139.74  Aligned_cols=267  Identities=10%  Similarity=0.024  Sum_probs=161.1

Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEe----------CCCcEEEeccCCCeeeEeec-------CCCCeEEEEEeeCCCCE
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNY  323 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s----------~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~  323 (626)
                      ..+..+..+  .++|+|++ +++++.          .+++|.+||..+++.+..+.       +......++++| ++++
T Consensus        45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~  121 (361)
T 2oiz_A           45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKF  121 (361)
T ss_dssp             EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSE
T ss_pred             EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCE
Confidence            344444444  89999998 666665          36789999999988887764       234567899999 9999


Q ss_pred             EEEEeC--CCcEEEEeCCCCeEEEe-ccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909          324 FISGSI--DGKVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  399 (626)
Q Consensus       324 l~s~s~--dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  399 (626)
                      |+++..  +++|.+||+.+++.+.. ...... ..+.+.|++ ..+++.+.||.+.+|++....................
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~  200 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD  200 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred             EEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence            998874  57899999999988776 555433 235567765 6788889999999999865322221111000001111


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce----eeeeecC----C----CCCeEEEEEcCCCCEEEEEeC-----
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLP----K----SGSQMSASFTTTGKHIISIGD-----  462 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~----~----~~~v~~~~~sp~g~~l~s~s~-----  462 (626)
                      .+ ..+.+++++ ..++..+.++.|.++|.....    ..+....    .    ......++|+|+++.++++..     
T Consensus       201 ~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          201 DP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             SC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             Cc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence            12 233346676 456667788999999975321    1111100    0    011223789999988887643     


Q ss_pred             ------CccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC--CC--c
Q 006909          463 ------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET--AP--W  532 (626)
Q Consensus       463 ------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~--~  532 (626)
                            .+.|.+||+.+........... ...++|+|+|..+.++           +.    ..+.+|+....  ..  .
T Consensus       279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~-----------n~----~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTL-----------DG----GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             TCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEE-----------CS----SCEEEEECSSSSCEEEEE
T ss_pred             ccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEe-----------CC----CeEEEEECCCCcceeeEE
Confidence                  3589999998863322221122 3334445554443333           21    33444444332  11  1


Q ss_pred             ccCCCcccCCccccCCCC
Q 006909          533 IRDSERFSLGSWFSNDGP  550 (626)
Q Consensus       533 ~~~~~~~~~~~~~s~dg~  550 (626)
                      +...+.....++++|||+
T Consensus       343 i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          343 IEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ETTSCSSEEEEEECCCSC
T ss_pred             eccCCCCcEEEEecCCCC
Confidence            233455567788999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=5.5e-13  Score=129.93  Aligned_cols=238  Identities=11%  Similarity=0.043  Sum_probs=168.0

Q ss_pred             cEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          183 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       183 ~V~~l~fspdg~~La-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      ...+++++|+|++++ +.+.++.|.+|+..+....                                             
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------------------------------   59 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------------------------   59 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------------------------
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------------------------
Confidence            688999999999777 5467889999986542110                                             


Q ss_pred             eeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909          262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  340 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~  340 (626)
                      .....+...+.++++.+++.|+.+..++.|.+||..+....... .....+.+++++| +++++++...++.|.+|+..+
T Consensus        60 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~  138 (270)
T 1rwi_B           60 VLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS  138 (270)
T ss_dssp             ECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC
T ss_pred             eEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC
Confidence            00012234567899999885555555889999998765443222 2335789999999 888888777788999998765


Q ss_pred             CeEEEe-ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909          341 KRVVDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  419 (626)
Q Consensus       341 ~~~~~~-~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s  419 (626)
                      ...... ......+..++++|+|+.+++...++.|.+|+..+......  ..     .....+.++++.++| .++++..
T Consensus       139 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~-----~~~~~p~~i~~d~~g-~l~v~~~  210 (270)
T 1rwi_B          139 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--PF-----TDITAPWGIAVDEAG-TVYVTEH  210 (270)
T ss_dssp             CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--CC-----SSCCSEEEEEECTTC-CEEEEET
T ss_pred             ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--cc-----cCCCCceEEEECCCC-CEEEEEC
Confidence            543332 22234678899999998777766788999999876553221  11     112568899999997 6777777


Q ss_pred             CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          420 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       420 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .++.|.+|+............+...+.+++++++|+++++...++.|+++++...
T Consensus       211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            7899999997644333222223357899999999998888888999999998764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.59  E-value=2.1e-13  Score=153.14  Aligned_cols=267  Identities=9%  Similarity=0.061  Sum_probs=166.2

Q ss_pred             EEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          184 IWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      ...++|||||++||.++.+         +.+.+||+.++.                                        
T Consensus        64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~----------------------------------------  103 (740)
T 4a5s_A           64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ----------------------------------------  103 (740)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE----------------------------------------
T ss_pred             ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc----------------------------------------
Confidence            3458899999999999876         556799998742                                        


Q ss_pred             cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCe-----------------EEE
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYV-----------------TCV  314 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v-----------------~~~  314 (626)
                            ...+..|...+...+||||| .|+.+ .++.|++|++.++...+...  +...+                 ..+
T Consensus       104 ------~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~  176 (740)
T 4a5s_A          104 ------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (740)
T ss_dssp             ------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             ------EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcce
Confidence                  23355677789999999999 66666 57899999998887655332  22222                 348


Q ss_pred             EEeeCCCCEEEEEeCCC------------------------------------cEEEEeCCC---C---eEEEecc----
Q 006909          315 QFNPIDDNYFISGSIDG------------------------------------KVRIWGVCE---K---RVVDWAD----  348 (626)
Q Consensus       315 ~~~p~~~~~l~s~s~dg------------------------------------~v~iwd~~~---~---~~~~~~~----  348 (626)
                      .|+| |++.|+.++.|.                                    +|++||+.+   +   +...+..    
T Consensus       177 ~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~  255 (740)
T 4a5s_A          177 WWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM  255 (740)
T ss_dssp             EECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred             EECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence            9999 999999876332                                    488899988   7   4544432    


Q ss_pred             --CCCCeEEEEEeeCCCEEEEEecC----CcEEEEEcCCCc----eeee-EEeeccccccCCCC-----eEEEEEcCCCC
Q 006909          349 --VRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGND----LKLE-KVDFHDRKKTSGNK-----ITGIQFSRDES  412 (626)
Q Consensus       349 --~~~~i~~i~~sp~g~~l~~g~~d----g~i~i~d~~~~~----~~~~-~~~~~~~~~~~~~~-----i~~l~~s~~~~  412 (626)
                        +...+..++|+|||+.++.....    ..|.+||+.++.    +... .+....    +...     ...+.|+|||.
T Consensus       256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~----~~~~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS----TTGWVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC----SSSCSSSSSCCCCEECTTSS
T ss_pred             CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc----CCceEccCcCCCceEcCCCC
Confidence              66779999999999977665432    379999998876    2111 110011    1122     23678999985


Q ss_pred             cEEEEEe-CCC--cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC-------ccEEEEECCCCCCC--CCC
Q 006909          413 QRIMITS-EDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-------CRVYVWNYDELCFP--SSK  480 (626)
Q Consensus       413 ~~l~~~s-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d-------g~I~iwd~~~~~~~--~~~  480 (626)
                      .+++..+ .+|  .|++||........ .......+..+. .++++.|+..+..       ..|+..++.++...  ...
T Consensus       332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~  409 (740)
T 4a5s_A          332 SFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSC  409 (740)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESST
T ss_pred             EEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecc
Confidence            4442554 444  67778865432221 111334455543 2446666554433       35555665543211  110


Q ss_pred             c---cCCccceeeeccCCcEEEEecCC
Q 006909          481 Q---KNSVRSCEHFFSEGVSVAVQWPG  504 (626)
Q Consensus       481 ~---~~~~~~~~~~~~~g~~~av~~s~  504 (626)
                      .   .........|+|+|..+++.++.
T Consensus       410 ~~~~~~~~~~~~~~S~dg~~~~~~~s~  436 (740)
T 4a5s_A          410 ELNPERCQYYSVSFSKEAKYYQLRCSG  436 (740)
T ss_dssp             TTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred             ccCCCCCceEEEEECCCCCEEEEEeCC
Confidence            0   11223345678888777666544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.59  E-value=7.6e-15  Score=151.68  Aligned_cols=219  Identities=9%  Similarity=-0.017  Sum_probs=139.5

Q ss_pred             ceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCe-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909          270 DVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYV-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  344 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~  344 (626)
                      .+..++|+|+| +|+.+...   ..|.+||+.+++......+...+ ..+.|+| +++.|+.++.++.|++||+.+++..
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCcE
Confidence            37788999998 55555432   36888899988776655444333 3478999 9999999999999999999988765


Q ss_pred             EeccC-CCCeEE-------------------EEEeeCCCEEEEE-----ecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909          345 DWADV-RDVISA-------------------ICYIPDGKGFIVG-----SITGTCHFYKASGNDLKLEKVDFHDRKKTSG  399 (626)
Q Consensus       345 ~~~~~-~~~i~~-------------------i~~sp~g~~l~~g-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  399 (626)
                      .+... ......                   +.|+|+++.++..     ..+..|.+||+.++.....  ...      .
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~--~~~------~  187 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI--HQD------T  187 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE--EEE------S
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee--ccC------C
Confidence            54442 221112                   2456777666554     3556899999987654322  111      2


Q ss_pred             CCeEEEEEcC-CCCcEEEEEeCC------CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEeCC-----ccE
Q 006909          400 NKITGIQFSR-DESQRIMITSED------SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDD-----CRV  466 (626)
Q Consensus       400 ~~i~~l~~s~-~~~~~l~~~s~d------g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d-----g~I  466 (626)
                      ..+..+.|+| ++ ..|+..+.+      ..|.+||..... ..+........+..++|+|+|++|+.++.+     +.|
T Consensus       188 ~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          188 AWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             SCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred             cccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence            5788999999 66 556555543      368888875332 222211112357788999999988777544     459


Q ss_pred             EEEECCCCCCCCCCccCCccceeeecc-CCcEEEE
Q 006909          467 YVWNYDELCFPSSKQKNSVRSCEHFFS-EGVSVAV  500 (626)
Q Consensus       467 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-~g~~~av  500 (626)
                      ++||+.++.......... .. ..|+| +|..++.
T Consensus       267 ~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~  299 (396)
T 3c5m_A          267 YKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVG  299 (396)
T ss_dssp             EEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEE
T ss_pred             EEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEE
Confidence            999998763221111111 11 45666 6665554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=2.3e-12  Score=138.43  Aligned_cols=326  Identities=13%  Similarity=0.046  Sum_probs=201.6

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccc
Q 006909          191 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGD  270 (626)
Q Consensus       191 pdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  270 (626)
                      |.+.++++...+++|.++|..+++.                                             +..+.. ...
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v---------------------------------------------~~~i~~-g~~  198 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEI---------------------------------------------KTVLDT-GYA  198 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCE---------------------------------------------EEEEEC-SSC
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeE---------------------------------------------EEEEeC-CCC
Confidence            4556777888899999999987432                                             333332 234


Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEeccC--CCeeeEeecCCCCeEEEEEe----eCCCCEEEEEeC-CCcEEEEeCCCCe
Q 006909          271 VLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFN----PIDDNYFISGSI-DGKVRIWGVCEKR  342 (626)
Q Consensus       271 V~~l~~s~~~-~l~s~s~d~~v~iwd~~--~~~~~~~~~~~~~v~~~~~~----p~~~~~l~s~s~-dg~v~iwd~~~~~  342 (626)
                      +..+.|+|++ ++++++.|+.|.+||+.  +++.+..+........++|+    | ++++++++.. +++|.++|..+.+
T Consensus       199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCC
T ss_pred             ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCc
Confidence            6689999998 78888999999999995  88888888766677899999    6 8988777654 5899999999887


Q ss_pred             EEEeccC------------CCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          343 VVDWADV------------RDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       343 ~~~~~~~------------~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      ++.....            ...+..+..++++..+++. ..+|.|.++|......... .....     ......+.|+|
T Consensus       278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v-~~i~~-----~~~~~d~~~~p  351 (567)
T 1qks_A          278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-TEISA-----ERFLHDGGLDG  351 (567)
T ss_dssp             EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-EEEEC-----CSSEEEEEECT
T ss_pred             EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee-eeeec-----cccccCceECC
Confidence            7654321            1257788888887665554 4568999999876542221 11111     24567889999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcceee--eee---cCCCCCeEEEEEcCCCCEE-EEEe-CCccEEEEECCCCCCC---C-
Q 006909          410 DESQRIMITSEDSKLRILDGVDVIHK--FKG---LPKSGSQMSASFTTTGKHI-ISIG-DDCRVYVWNYDELCFP---S-  478 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~---~~~~~~v~~~~~sp~g~~l-~s~s-~dg~I~iwd~~~~~~~---~-  478 (626)
                      +|..++++...+++|.++|+.+....  +..   .+|.+.-..+ ++|++..+ +++. .++.|.++|..+...+   . 
T Consensus       352 dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k  430 (567)
T 1qks_A          352 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK  430 (567)
T ss_dssp             TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE
Confidence            98544555557899999998754322  221   1233222222 58875544 4443 4689999999873211   0 


Q ss_pred             ---CCc-cCCccceeeeccCCcEEEEec--CCC-----CcccccccCCCccccCccccccCCC--CcccCCCcccCCccc
Q 006909          479 ---SKQ-KNSVRSCEHFFSEGVSVAVQW--PGI-----GTEQKSLCSSSLRDCSQKWDNLETA--PWIRDSERFSLGSWF  545 (626)
Q Consensus       479 ---~~~-~~~~~~~~~~~~~g~~~av~~--s~~-----~~~l~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~~~  545 (626)
                         ... .......+.++|++..+-+..  +|+     ...++........+....+..+...  ..+...+..+..+.|
T Consensus       431 vv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (567)
T 1qks_A          431 ILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEF  510 (567)
T ss_dssp             EEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEE
T ss_pred             EEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeE
Confidence               000 011112245567776665544  333     2233333221000000000011000  001123446778899


Q ss_pred             cCCCCcccccCC----CCCCCCCCCcccC
Q 006909          546 SNDGPCRGSATW----PAEKLPLWDVTID  570 (626)
Q Consensus       546 s~dg~~l~s~~~----~d~~i~vwd~~~~  570 (626)
                      +|||+.+..+.|    .++.|-++|..+.
T Consensus       511 ~~~G~~~~~s~~~~~~~~~~i~v~D~~t~  539 (567)
T 1qks_A          511 NKDGTEVWFSVWNGKDQESALVVVDDKTL  539 (567)
T ss_dssp             CTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence            999998776655    2578888888876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.57  E-value=7.4e-13  Score=134.23  Aligned_cols=183  Identities=11%  Similarity=0.071  Sum_probs=125.7

Q ss_pred             cceEEEEEcCCC-eEEEEeCC---C--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC------------
Q 006909          269 GDVLDLAWSNSN-YLLSCSMD---K--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------------  330 (626)
Q Consensus       269 ~~V~~l~~s~~~-~l~s~s~d---~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d------------  330 (626)
                      ..+..++|+|+| .|+.++.+   +  .|.+||+.+++......+.. +..++|+| +++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence            467889999998 67766543   2  48888998888777666555 99999999 99988887642            


Q ss_pred             ---------------CcEEEEeCCCCeE-EEeccCCCCeEEEEEeeCCCEEEEEecCC-------cEEEEEcCCCceeee
Q 006909          331 ---------------GKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITG-------TCHFYKASGNDLKLE  387 (626)
Q Consensus       331 ---------------g~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~g~~dg-------~i~i~d~~~~~~~~~  387 (626)
                                     ..|++||+.+++. ..+.. . .+..+.|+|+| .++++..++       ...+|.+.++..  .
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--E  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--E
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce--E
Confidence                           5699999998877 44444 4 78899999999 777776542       445555543322  1


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEEeCCcceeeeeecCCCCCeEE-EEEcCCCCEEE
Q 006909          388 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--------SKLRILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHII  458 (626)
Q Consensus       388 ~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~  458 (626)
                      .+...       ..+..+  +|+| ++|+.++.+        ..|.+|| ......+ ...+...+.. +.|+ ++ +++
T Consensus       212 ~l~~~-------~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l-~~~~~~~~~~~~~~s-dg-~~~  277 (347)
T 2gop_A          212 KMFEK-------VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD-GKEVMGI-LDEVDRGVGQAKIKD-GK-VYF  277 (347)
T ss_dssp             EEEEE-------ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC-SSCEEES-STTCCSEEEEEEEET-TE-EEE
T ss_pred             EeccC-------cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC-CCceEec-cccCCcccCCccEEc-Cc-EEE
Confidence            11111       234443  8998 556655533        4788888 3222222 2234566775 8999 88 889


Q ss_pred             EEeCCccEEEEECCC
Q 006909          459 SIGDDCRVYVWNYDE  473 (626)
Q Consensus       459 s~s~dg~I~iwd~~~  473 (626)
                      +++.++.++|| +.+
T Consensus       278 ~~~~~~~~~l~-~~~  291 (347)
T 2gop_A          278 TLFEEGSVNLY-IWD  291 (347)
T ss_dssp             EEEETTEEEEE-EES
T ss_pred             EEecCCcEEEE-EcC
Confidence            99999999999 874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.55  E-value=1.3e-13  Score=153.75  Aligned_cols=242  Identities=12%  Similarity=0.059  Sum_probs=164.2

Q ss_pred             cccCcEEEEEEcCCCCEEE-----EEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          179 AHKGCIWTLKFSPDGRYLA-----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~La-----tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      +|+..+..++|||||++||     .|+.+..|++||+.++....                                    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------  161 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------------------------------------  161 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------------------------------------
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------------------------------------
Confidence            5777899999999999999     44455789999998753210                                    


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCc-------------EEEeccCCCee--eEeec---CCCCeEEE
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT-------------VRMWQVGCNQC--LNVFD---HHNYVTCV  314 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~-------------v~iwd~~~~~~--~~~~~---~~~~v~~~  314 (626)
                             ...+...  ....++|+|+| .|+.++.|..             |++|++.+++.  ...+.   +...+..+
T Consensus       162 -------~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~  232 (695)
T 2bkl_A          162 -------VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS  232 (695)
T ss_dssp             -------SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred             -------CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence                   0011111  12578999998 7888888776             99999988762  22332   45678999


Q ss_pred             EEeeCCCCEEEEEeCCC----cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec----CCcEEEEEcCCCcee-
Q 006909          315 QFNPIDDNYFISGSIDG----KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLK-  385 (626)
Q Consensus       315 ~~~p~~~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~----dg~i~i~d~~~~~~~-  385 (626)
                      .|+| ++++|+.++.++    .|++|+..+++...+..+...+....+ ++|. ++..+.    ++.|.+||+.+.... 
T Consensus       233 ~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~  309 (695)
T 2bkl_A          233 DLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS  309 (695)
T ss_dssp             EECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred             EECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence            9999 999888877666    688888777776666666666666666 6777 555543    578999998765421 


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--c-ceeeeeecCCCCCeEEEEEcCCCCEEEEEe-
Q 006909          386 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--D-VIHKFKGLPKSGSQMSASFTTTGKHIISIG-  461 (626)
Q Consensus       386 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-  461 (626)
                      ...+..+.    ....+..++|+ ++ .++++...|+..+||...  . ....+.. ...+.+..++++|+++.|+... 
T Consensus       310 ~~~l~~~~----~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~s  382 (695)
T 2bkl_A          310 WKEIVPED----SSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQL-PGVGAASNLMGLEDLDDAYYVFT  382 (695)
T ss_dssp             CEEEECCC----SSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEECCC-SSSSEECCCBSCTTCSEEEEEEE
T ss_pred             CeEEecCC----CCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecC-CCCeEEEEeecCCCCCEEEEEEc
Confidence            11221111    12467888888 43 688888999988887533  2 1222222 1255677788899998776332 


Q ss_pred             ---CCccEEEEECCCCC
Q 006909          462 ---DDCRVYVWNYDELC  475 (626)
Q Consensus       462 ---~dg~I~iwd~~~~~  475 (626)
                         ..++|++||+.++.
T Consensus       383 s~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          383 SFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             ETTEEEEEEEEETTTCC
T ss_pred             CCCCCCEEEEEECCCCc
Confidence               35789999998763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.55  E-value=2e-11  Score=120.47  Aligned_cols=239  Identities=8%  Similarity=0.053  Sum_probs=169.3

Q ss_pred             cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      +..+...+.+++++++|+++++...++.|.+||.. +....                                       
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~---------------------------------------   49 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE---------------------------------------   49 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE---------------------------------------
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE---------------------------------------
Confidence            33556789999999999988877667889999876 32110                                       


Q ss_pred             cCCCceeeccCccceEEEEEcCCCeEE-EEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSNYLL-SCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                           ..+..+...+.++++.+++.+. +...++.|..||.. ++. ..+.   ....+.++++.| ++.++++...++.
T Consensus        50 -----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~  121 (299)
T 2z2n_A           50 -----YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNR  121 (299)
T ss_dssp             -----EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTE
T ss_pred             -----ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCce
Confidence                 0111234678899999988544 44457889999986 333 2232   445789999998 8888888777889


Q ss_pred             EEEEeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          333 VRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       333 v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      |..||. +++.....  .....+..+++.++|+.+++...++.|..||. ++....  ....    .....+.++++.++
T Consensus       122 i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~~~~  193 (299)
T 2z2n_A          122 IGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--FKIP----TPASGPVGITKGND  193 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECTT
T ss_pred             EEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--eeCC----CCCCcceeEEECCC
Confidence            999998 55544332  23467899999999987777767789999998 444321  1111    12356889999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      | .++++...++.|.+||.......+........+.+++++++|+..++...++.|.+||..
T Consensus       194 g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          194 D-ALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             S-SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             C-CEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            7 566666678899999984333333333345678999999999977776678899999984

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.55  E-value=6.2e-13  Score=134.78  Aligned_cols=220  Identities=12%  Similarity=0.172  Sum_probs=147.0

Q ss_pred             CcEEEEEEcCCCCEEEEEeCC---Cc--EEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909          182 GCIWTLKFSPDGRYLASGGED---GV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  256 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~D---g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (626)
                      ..+..++|||||++||.++.+   +.  |.+|++.++..                                         
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~-----------------------------------------   97 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS-----------------------------------------   97 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE-----------------------------------------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce-----------------------------------------
Confidence            458889999999999988754   33  67777765321                                         


Q ss_pred             cCCCceeeccCccceEEEEEcCCC-eEEEEeC---------------------------CCcEEEeccCCCeeeEeecCC
Q 006909          257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---------------------------DKTVRMWQVGCNQCLNVFDHH  308 (626)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~---------------------------d~~v~iwd~~~~~~~~~~~~~  308 (626)
                           ..+..+.. +..++|+|++ .|+.++.                           ...|.+||+.+++.+..+...
T Consensus        98 -----~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~  171 (347)
T 2gop_A           98 -----KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP  171 (347)
T ss_dssp             -----EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred             -----EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence                 12222233 8999999998 6776653                           257999999988773444323


Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCC---------cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC--------
Q 006909          309 NYVTCVQFNPIDDNYFISGSIDG---------KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT--------  371 (626)
Q Consensus       309 ~~v~~~~~~p~~~~~l~s~s~dg---------~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d--------  371 (626)
                       .+..++|+| ++ +++++..++         .|.++|  +++...+..+ ..+..+  +|+|+.|+.++.+        
T Consensus       172 -~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~  243 (347)
T 2gop_A          172 -RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEH  243 (347)
T ss_dssp             -TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSS
T ss_pred             -CcccccCCC-Ce-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEEccccCCcccc
Confidence             788999999 88 777776542         355555  6665555544 445544  9999999887754        


Q ss_pred             CcEEEEEcCCCceeeeEEeeccccccCCCCeEE-EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEE
Q 006909          372 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF  450 (626)
Q Consensus       372 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  450 (626)
                      ..|.+||  ++...  .+     ...+...+.. +.|+ ++  ++++++.++.++|| +.+... .....+...|.+++|
T Consensus       244 ~~l~~~d--~~~~~--~l-----~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~  309 (347)
T 2gop_A          244 NKLYIYD--GKEVM--GI-----LDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDV  309 (347)
T ss_dssp             CEEEEEC--SSCEE--ES-----STTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEE
T ss_pred             ceEEEEC--CCceE--ec-----cccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeee
Confidence            3677777  33221  11     1112356776 8999 75  88889999999999 753221 222234677899999


Q ss_pred             cCCCCEEEEEeCCccE-EEEECC
Q 006909          451 TTTGKHIISIGDDCRV-YVWNYD  472 (626)
Q Consensus       451 sp~g~~l~s~s~dg~I-~iwd~~  472 (626)
                      +|  .++++++.++.. .+|.++
T Consensus       310 s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          310 DE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             SS--SEEEEEECSSSCCEEEEES
T ss_pred             eC--cEEEEEcCCCChHHheEeC
Confidence            99  677777777654 677665

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.55  E-value=2.1e-13  Score=151.40  Aligned_cols=202  Identities=9%  Similarity=0.004  Sum_probs=134.8

Q ss_pred             CccceEEEEEcCCC-eEEEEeCC----------CcEEEeccCC------CeeeEee-cCCCCeEEEEEeeCCCCEEEEEe
Q 006909          267 HKGDVLDLAWSNSN-YLLSCSMD----------KTVRMWQVGC------NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~s~s~d----------~~v~iwd~~~------~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                      |...+..++|+|+| .|++++.+          ..|++||+.+      +...... .+...+..++|+| ++++|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence            66788999999998 78877776          5899999988      6666555 5667788899999 999999887


Q ss_pred             CCC--------cEEEEeCC-CC---eEEEecc-CCCCeEEEEEeeCCCEEEEEecCC--cEEEEEcCCCceeeeEEeecc
Q 006909          329 IDG--------KVRIWGVC-EK---RVVDWAD-VRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHD  393 (626)
Q Consensus       329 ~dg--------~v~iwd~~-~~---~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~  393 (626)
                      .++        .|++||+. ++   +...+.. +...+..+.|+|||++++++..++  .|.+||+.++.... ....+.
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~  285 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LCRREE  285 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSCCSS
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee-cccccc
Confidence            553        79999998 56   5555444 467899999999999888888888  55555554443221 111111


Q ss_pred             cccc--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEE--eCCcc-eeeeeecCCCCCeEEE-EEcCCCCEEEEEeCCc--c
Q 006909          394 RKKT--SGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVDV-IHKFKGLPKSGSQMSA-SFTTTGKHIISIGDDC--R  465 (626)
Q Consensus       394 ~~~~--~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw--d~~~~-~~~~~~~~~~~~v~~~-~~sp~g~~l~s~s~dg--~  465 (626)
                      ....  -.-.+..++|+|++ .++++++. +.++||  |.... ...+.  .+...+..+ +++++.-++++++.+.  .
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  361 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGELVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYE  361 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTEEEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred             cccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCcEEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCE
Confidence            0000  00115678999987 68888888 999999  54422 23332  245556666 4443333344455554  5


Q ss_pred             EEEEECCCC
Q 006909          466 VYVWNYDEL  474 (626)
Q Consensus       466 I~iwd~~~~  474 (626)
                      |++||+.++
T Consensus       362 i~~~d~~~g  370 (662)
T 3azo_A          362 VVELDTVTG  370 (662)
T ss_dssp             EEEEETTTC
T ss_pred             EEEEECCCC
Confidence            666676665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.54  E-value=2.2e-12  Score=129.96  Aligned_cols=204  Identities=12%  Similarity=0.116  Sum_probs=145.2

Q ss_pred             ccceEEEEEcCCC-eEEEEeCC------------------------CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCC
Q 006909          268 KGDVLDLAWSNSN-YLLSCSMD------------------------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID  320 (626)
Q Consensus       268 ~~~V~~l~~s~~~-~l~s~s~d------------------------~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~  320 (626)
                      -+.+.+++++|+| ++++...+                        ++|.+||..+++.+..+.  +-..+..++++| +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            4679999999998 45555555                        379999999998887775  345789999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC--eEEEe---------ccCCCCeEEEEEee-CCCEEEEEe-cCCcEEEEEcCCCceeee
Q 006909          321 DNYFISGSIDGKVRIWGVCEK--RVVDW---------ADVRDVISAICYIP-DGKGFIVGS-ITGTCHFYKASGNDLKLE  387 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~--~~~~~---------~~~~~~i~~i~~sp-~g~~l~~g~-~dg~i~i~d~~~~~~~~~  387 (626)
                      ++++++...++.|++||....  .+..+         ..+-.....++++| +|+.+++.+ .++.|++|+..+. ... 
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-~~~-  179 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-FVT-  179 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC-EEE-
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC-EEE-
Confidence            998888888999999998765  23333         23334688999999 788777776 6899999995433 222 


Q ss_pred             EEeecccc----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEE-
Q 006909          388 KVDFHDRK----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI-  460 (626)
Q Consensus       388 ~~~~~~~~----~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~-  460 (626)
                      .+...+..    ......+.+++++|++..++++...++.|++||..  +....+....+...+..++|+| +..+++. 
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g  258 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG  258 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence            22111110    11124588999999844778888889999999976  3344444444667788999999 4333333 


Q ss_pred             ------eCCccEEEEECCCCC
Q 006909          461 ------GDDCRVYVWNYDELC  475 (626)
Q Consensus       461 ------s~dg~I~iwd~~~~~  475 (626)
                            ..+..|++|++.++.
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~  279 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGE  279 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCC
T ss_pred             CEEeccCCCcEEEEEEcCCCe
Confidence                  345589999988763

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=2.1e-12  Score=130.00  Aligned_cols=233  Identities=6%  Similarity=-0.012  Sum_probs=163.6

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      .....+.+. +++++++...++.|.+||..+++.                                             +
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---------------------------------------------~   77 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---------------------------------------------V   77 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---------------------------------------------E
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---------------------------------------------E
Confidence            446777774 455566666689999999987432                                             3


Q ss_pred             eeeccCccceEEEEEcCCCeEEEEe-CCCcEEEeccCCCeeeEeecCCC------CeEEEEEeeCCCCEEEEEe-CCCcE
Q 006909          262 QELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS-IDGKV  333 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~~~------~v~~~~~~p~~~~~l~s~s-~dg~v  333 (626)
                      .++. .......+++++++.++.+. .++.|.+||..+++....+....      ....+++ . ++..+++.. .++.|
T Consensus        78 ~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v  154 (328)
T 3dsm_A           78 GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRI  154 (328)
T ss_dssp             EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEE
T ss_pred             EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEE
Confidence            3332 23567889998888666655 88999999999999887775443      5667777 3 555555543 48899


Q ss_pred             EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC----------CcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      .++|+.++++............+.++|+|++++++..+          +.|.++|..+.+... .+....     .....
T Consensus       155 ~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~-~~~~~~-----g~~p~  228 (328)
T 3dsm_A          155 LKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK-QFKFKL-----GDWPS  228 (328)
T ss_dssp             EEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE-EEECCT-----TCCCE
T ss_pred             EEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE-EEecCC-----CCCce
Confidence            99999998887766555667789999999876666554          789999998776432 222221     24688


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcceee-ee-ecCCCCCeEEEEEcC-CCCEEEEE----eCCccEEEEECC
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FK-GLPKSGSQMSASFTT-TGKHIISI----GDDCRVYVWNYD  472 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~-~~~~~~~v~~~~~sp-~g~~l~s~----s~dg~I~iwd~~  472 (626)
                      .++++|++ .+++++..  .|.+||..+.... .. ..........++++| ++...++.    ..++.|.+||.+
T Consensus       229 ~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          229 EVQLNGTR-DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             EEEECTTS-CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             eEEEecCC-CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            99999997 56666554  8999997643321 11 111145788999999 55555665    568999999988

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.52  E-value=1e-11  Score=123.71  Aligned_cols=245  Identities=13%  Similarity=0.139  Sum_probs=166.9

Q ss_pred             ccCcEEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          180 HKGCIWTLKFSPDGRYLAS-------GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Lat-------gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      .-....+++|+++|+++++       +..++.|.+||..++......                                 
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~---------------------------------   62 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC---------------------------------   62 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE---------------------------------
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE---------------------------------
Confidence            3445789999999998887       567889999997764321100                                 


Q ss_pred             cccccCCCceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEe-ec-----CCCCeEEEEEeeCCCCEEE
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNV-FD-----HHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~-~~-----~~~~v~~~~~~p~~~~~l~  325 (626)
                              .....++...+.+++++++ +.|+.++..+.|.+||.. ++.... ..     ....+.+++++| ++++++
T Consensus        63 --------~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v  132 (314)
T 1pjx_A           63 --------KPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWI  132 (314)
T ss_dssp             --------CCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEE
T ss_pred             --------ecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEE
Confidence                    0001124567899999999 876666666679999998 766544 32     123588999999 888888


Q ss_pred             EEeCC---------------CcEEEEeCCCCeEEEeccCCCCeEEEEEe----eCCCEEEEE-ecCCcEEEEEcC-CCce
Q 006909          326 SGSID---------------GKVRIWGVCEKRVVDWADVRDVISAICYI----PDGKGFIVG-SITGTCHFYKAS-GNDL  384 (626)
Q Consensus       326 s~s~d---------------g~v~iwd~~~~~~~~~~~~~~~i~~i~~s----p~g~~l~~g-~~dg~i~i~d~~-~~~~  384 (626)
                      +...+               +.|..||.. ++.............++++    |+++.++++ ..++.|.+|+.. .+..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~  211 (314)
T 1pjx_A          133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI  211 (314)
T ss_dssp             EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred             EecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc
Confidence            77655               568888876 5555444444567889999    999766665 467899999986 3332


Q ss_pred             eeeEEeeccccccCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEE-EE
Q 006909          385 KLEKVDFHDRKKTSG-NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHII-SI  460 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~-s~  460 (626)
                      ........  ...+. ..+..++++++| .++++...++.|.+||..+  ....+..  +...+.+++|+|+|++|+ +.
T Consensus       212 ~~~~~~~~--~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          212 ENKKVWGH--IPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEEEEEE--CCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEE
T ss_pred             ccceEEEE--CCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEe
Confidence            11111111  11112 457889999997 6777777889999999762  2333332  446789999999999555 44


Q ss_pred             eCCccEEEEECCC
Q 006909          461 GDDCRVYVWNYDE  473 (626)
Q Consensus       461 s~dg~I~iwd~~~  473 (626)
                      ..++.|..|++..
T Consensus       287 ~~~~~l~~~~~~~  299 (314)
T 1pjx_A          287 HENNAVWKFEWQR  299 (314)
T ss_dssp             TTTTEEEEEECSS
T ss_pred             CCCCeEEEEeCCC
Confidence            5568999999875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.51  E-value=6.1e-12  Score=123.76  Aligned_cols=200  Identities=10%  Similarity=0.153  Sum_probs=142.8

Q ss_pred             ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-------CCCCeEEEEEeeCCCCEEEEEeC-CCcEEE
Q 006909          265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSI-DGKVRI  335 (626)
Q Consensus       265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~l~s~s~-dg~v~i  335 (626)
                      .++-..+.++++++++ ++++...++.|.+||.. ++.+..+.       +...+.++++.+.+++++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3566789999999988 55666788999999987 55665553       23578899995326666666543 789999


Q ss_pred             EeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          336 WGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       336 wd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      ||. +++.....  .....+..++++|+|+.+++...++.|.+||..+...  ..+...    .+...+.+++++++| .
T Consensus       105 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~----~~~~~p~~i~~~~~g-~  176 (286)
T 1q7f_A          105 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL--HKFGCS----KHLEFPNGVVVNDKQ-E  176 (286)
T ss_dssp             ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE--EEEECT----TTCSSEEEEEECSSS-E
T ss_pred             ECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE--EEeCCC----CccCCcEEEEECCCC-C
Confidence            995 44444322  2345689999999998777777789999999754322  122111    123568999999997 6


Q ss_pred             EEEEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc-cEEEEECCC
Q 006909          414 RIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYDE  473 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg-~I~iwd~~~  473 (626)
                      ++++...++.|++||.... ...+....+...+..++++++|+++++...++ .|.+|+...
T Consensus       177 l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g  238 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  238 (286)
T ss_dssp             EEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             EEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence            7777778999999997532 23333222336789999999999988888776 999999654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.50  E-value=1.6e-11  Score=131.86  Aligned_cols=286  Identities=13%  Similarity=0.078  Sum_probs=184.8

Q ss_pred             CCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC--CCeEEEeccCCCCeE
Q 006909          278 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRVVDWADVRDVIS  354 (626)
Q Consensus       278 ~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~i~  354 (626)
                      +.+ .+++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+.  +.+.+..........
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~  243 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  243 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence            334 56677888999999999999999988777788999999 99999999999999999995  666666555555678


Q ss_pred             EEEEe----eCCCEEEEEec-CCcEEEEEcCCCceeeeEEeecccc-c----cCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 006909          355 AICYI----PDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRK-K----TSGNKITGIQFSRDESQRIMITSEDSKL  424 (626)
Q Consensus       355 ~i~~s----p~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~-~----~~~~~i~~l~~s~~~~~~l~~~s~dg~i  424 (626)
                      .++|+    |+|++++++.. ++++.++|..+.+... .+...+.. .    .....+..+..+++++.+++....+|.|
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~-~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE-EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            99999    69999888765 4899999988766543 22221100 0    0123688899999887777777788999


Q ss_pred             EEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCCCCCCCcc-C---Cccceee-eccC-Cc
Q 006909          425 RILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQK-N---SVRSCEH-FFSE-GV  496 (626)
Q Consensus       425 ~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~-~---~~~~~~~-~~~~-g~  496 (626)
                      .++|..... ..............+.|+|+|++++++. .++.|.++|+.++........ .   ....-.. ++|+ +.
T Consensus       323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~  402 (567)
T 1qks_A          323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP  402 (567)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred             EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCc
Confidence            999976431 1111122344677889999999987765 578999999998732211111 1   0001112 4565 33


Q ss_pred             EEEEecCC-CCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccC--CCC----CCCCCCCccc
Q 006909          497 SVAVQWPG-IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSAT--WPA----EKLPLWDVTI  569 (626)
Q Consensus       497 ~~av~~s~-~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~--~~d----~~i~vwd~~~  569 (626)
                      .+++.-.. +...++....  .......|......+   ..+.....+.++|||+++....  .||    ..|.++|+.+
T Consensus       403 v~~t~~~g~~~Vsvid~~~--~~~~~~~~kvv~~i~---~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~  477 (567)
T 1qks_A          403 VWATSHMGDDSVALIGTDP--EGHPDNAWKILDSFP---ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA  477 (567)
T ss_dssp             EEEEEBSSSSEEEEEECCT--TTCTTTBTSEEEEEE---CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred             EEEeCCCCCCeEEEecCCC--CCCccccCEEEEEEe---cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence            33333222 2222232222  111122244433222   1222234567899999776544  232    4788898876


Q ss_pred             C
Q 006909          570 D  570 (626)
Q Consensus       570 ~  570 (626)
                      .
T Consensus       478 ~  478 (567)
T 1qks_A          478 M  478 (567)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.46  E-value=1.3e-11  Score=137.92  Aligned_cols=201  Identities=9%  Similarity=0.025  Sum_probs=136.7

Q ss_pred             cCccceEEEEEcCCC-eEEEEeCC-C----cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc-------
Q 006909          266 GHKGDVLDLAWSNSN-YLLSCSMD-K----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-------  332 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s~s~d-~----~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~-------  332 (626)
                      +|...+..++||||| +|+.++.+ |    +|++||+.+++..........+..++|+| +++.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence            455578899999998 66655443 3    89999999998876433223367899999 9999999888766       


Q ss_pred             ---------EEEEeCCCCe---EEEec--cCCCCeEEEEEeeCCCEEEEEec-----CCcEEEEEcCC------Cceeee
Q 006909          333 ---------VRIWGVCEKR---VVDWA--DVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASG------NDLKLE  387 (626)
Q Consensus       333 ---------v~iwd~~~~~---~~~~~--~~~~~i~~i~~sp~g~~l~~g~~-----dg~i~i~d~~~------~~~~~~  387 (626)
                               |++|++.+++   .....  .+...+..+.|+|||++|+.++.     +..|++||+.+      +.....
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     9999998765   22222  23456789999999999998775     56899999976      322222


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEeCCcce----eeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909          388 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISI  460 (626)
Q Consensus       388 ~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d---g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~g~~l~s~  460 (626)
                      .+..+      ...+.. .|+|+|..+++.+..+   +.|.+||+....    ..+..+.....+..++|++++.++++.
T Consensus       281 ~l~~~------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~  353 (710)
T 2xdw_A          281 KLIDN------FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY  353 (710)
T ss_dssp             EEECS------SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred             EeeCC------CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence            22221      133333 4888885444444433   369999976542    333332222367789999888888888


Q ss_pred             eCCc--cEEEEECCCC
Q 006909          461 GDDC--RVYVWNYDEL  474 (626)
Q Consensus       461 s~dg--~I~iwd~~~~  474 (626)
                      ..|+  .|++|++.++
T Consensus       354 ~~~g~~~l~~~~~~~g  369 (710)
T 2xdw_A          354 LHDVKNTLQLHDLATG  369 (710)
T ss_dssp             EETTEEEEEEEETTTC
T ss_pred             EECCEEEEEEEECCCC
Confidence            8887  4666777444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.46  E-value=3.9e-12  Score=141.79  Aligned_cols=195  Identities=12%  Similarity=0.051  Sum_probs=131.7

Q ss_pred             cCccceEEEEEcCCC-eEE-----EEeCCCcEEEeccCCCeee-EeecCCCCeEEEEEeeCCCCEEEEEeCCCc------
Q 006909          266 GHKGDVLDLAWSNSN-YLL-----SCSMDKTVRMWQVGCNQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDGK------  332 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~-----s~s~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~------  332 (626)
                      +|...+..++||||| +|+     .|+.+.+|++||+.+++.+ ...-.......++|+| +++.|+.++.|..      
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence            466679999999998 555     2344568999999998875 2111111126889999 9999999988776      


Q ss_pred             -------EEEEeCCCCe----EEE-eccCCCCeEEEEEeeCCCEEEEEecCC----cEEEEEcCCCceeeeEEeeccccc
Q 006909          333 -------VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKK  396 (626)
Q Consensus       333 -------v~iwd~~~~~----~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg----~i~i~d~~~~~~~~~~~~~~~~~~  396 (626)
                             |++|++.++.    ++. ...+...+..+.|+|||++|+.++.++    .|.+++..+..  ...+...    
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~----  270 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FRLLVKG----  270 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CEEEEEC----
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eEEeecC----
Confidence                   9999998765    222 223446788999999999999887666    56666544332  2222222    


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEe---CCCcEEEEeCCcce----eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909          397 TSGNKITGIQFSRDESQRIMITS---EDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  469 (626)
Q Consensus       397 ~~~~~i~~l~~s~~~~~~l~~~s---~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw  469 (626)
                        ...+....+ ++|. +++.+.   .++.|.+||+.+..    ..+........+..++|+ ++.++++...|+..+||
T Consensus       271 --~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          271 --VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR  345 (695)
T ss_dssp             --SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             --CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence              134555556 6664 555544   25789999986542    333332224567888888 67788888899988888


Q ss_pred             ECC
Q 006909          470 NYD  472 (626)
Q Consensus       470 d~~  472 (626)
                      .++
T Consensus       346 ~~~  348 (695)
T 2bkl_A          346 VAT  348 (695)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.46  E-value=3.7e-11  Score=120.77  Aligned_cols=193  Identities=9%  Similarity=0.068  Sum_probs=139.4

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  348 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  348 (626)
                      .....+++..+..+++...++.|.+||..+++.+..+........+++++ ++..+++...++.|.+||..++++.....
T Consensus        44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            34567777654466666778999999999999998887777899999998 77555554478999999999988775444


Q ss_pred             CCC------CeEEEEEeeCCCEEEEEe--cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909          349 VRD------VISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  420 (626)
Q Consensus       349 ~~~------~i~~i~~sp~g~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~  420 (626)
                      ...      ....+++ . +..++++.  .++.|.++|+.+.+.... +...       .....+.++|+| ++++++..
T Consensus       123 ~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~-i~~g-------~~p~~i~~~~dG-~l~v~~~~  191 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDE-LTIG-------IQPTSLVMDKYN-KMWTITDG  191 (328)
T ss_dssp             CTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEE-EECS-------SCBCCCEECTTS-EEEEEBCC
T ss_pred             cCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEE-EEcC-------CCccceEEcCCC-CEEEEECC
Confidence            333      5667777 4 44555555  488999999988765332 2221       345678999997 55555554


Q ss_pred             C----------CcEEEEeCCccee--eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909          421 D----------SKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       421 d----------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      +          +.|.++|..+...  .+.. .....+..++|+|++++|+++..  .|++||..++..
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKF-KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEEC-CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEec-CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence            4          7899999765432  2322 12347899999999999988765  899999987643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=2e-11  Score=119.23  Aligned_cols=212  Identities=11%  Similarity=-0.040  Sum_probs=152.7

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCc-cc
Q 006909          192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHK-GD  270 (626)
Q Consensus       192 dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~  270 (626)
                      .+++|++++.|+.|.+||.++++.                                             +..+..+. ..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~---------------------------------------------~w~~~~~~~~~   38 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEI---------------------------------------------VWEYPLEKGWE   38 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEE---------------------------------------------EEEEECCTTCC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeE---------------------------------------------EEEeCCCccCC
Confidence            467999999999999999977432                                             34444444 46


Q ss_pred             eEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEeeCCCCEEEEEeC-CCcEEEEeCCCCeEEEec
Q 006909          271 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVDWA  347 (626)
Q Consensus       271 V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~  347 (626)
                      +.++.++|+|.++. +.++.|..||. +++.+..+...  ..+.++.+.| +++++++.+. ++.|..+|.....+..+.
T Consensus        39 ~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~  115 (276)
T 3no2_A           39 CNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNMKGEVLSKTE  115 (276)
T ss_dssp             CCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTTSCEEEEEE
T ss_pred             CcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEe
Confidence            78899999985444 45788999999 78888888643  5788999999 9999999887 778888887444333322


Q ss_pred             ------cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          348 ------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       348 ------~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                            .+......+++.++|+++++...++.|..||.. ++.... ....       ..+.++...++| ..++++..+
T Consensus       116 ~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~-~~~~-------~~~~~~~~~~~g-~~~v~~~~~  185 (276)
T 3no2_A          116 FETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS-VKLS-------GTPFSSAFLDNG-DCLVACGDA  185 (276)
T ss_dssp             ECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE-EECS-------SCCCEEEECTTS-CEEEECBTT
T ss_pred             ccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE-EECC-------CCccceeEcCCC-CEEEEeCCC
Confidence                  111234556788999999999999999999988 554332 2221       345567788887 688888888


Q ss_pred             CcEEEEeCCcceeeeeecCC------CCCeEEEEEcCCCCEEEEEe
Q 006909          422 SKLRILDGVDVIHKFKGLPK------SGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       422 g~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~g~~l~s~s  461 (626)
                      +.|..+|..+.....+...+      ...+..+...++|+.+++..
T Consensus       186 ~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          186 HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            89999997744444333111      22367888889998888874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=4.3e-10  Score=110.88  Aligned_cols=238  Identities=7%  Similarity=-0.011  Sum_probs=167.7

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .....+.+++++++|++.++...++.|.+|+.. +....                                         
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-----------------------------------------   54 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-----------------------------------------   54 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-----------------------------------------
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-----------------------------------------
Confidence            345678999999999988877778899999876 32210                                         


Q ss_pred             CCceeeccCccceEEEEEcCCCeEEEE-eCCCcEEEeccCCCeeeEee-c-CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~-s~d~~v~iwd~~~~~~~~~~-~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                         ..+..+...+.++++.+++.+..+ ..++.|..+|.. ++..... . ....+.++++.+ +++++++...++.|..
T Consensus        55 ---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~  129 (300)
T 2qc5_A           55 ---FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGK  129 (300)
T ss_dssp             ---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEE
T ss_pred             ---EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEE
Confidence               011123356889999988854444 447889999988 5543221 1 346789999998 8888887776889999


Q ss_pred             EeCCCCeEEEe--ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          336 WGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       336 wd~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      +|.. ++....  ......+..+++.++|+..++...++.|..|+. ++....  ....    .....+.++++.++| .
T Consensus       130 ~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~d~~g-~  200 (300)
T 2qc5_A          130 LTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE--YPLP----TNAAAPVGITSGNDG-A  200 (300)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECTTS-S
T ss_pred             ECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE--eeCC----CCCCCcceEEECCCC-C
Confidence            9987 555433  223467899999999986666656788999998 333221  2111    123568899999987 5


Q ss_pred             EEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          414 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      ++++....+.|.+||.......+........+.+++++++|++.++...++.|..|+..
T Consensus       201 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          201 LWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            66666667889999974333333333345678999999999977777677899999984

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=1.8e-11  Score=119.66  Aligned_cols=217  Identities=13%  Similarity=0.099  Sum_probs=152.8

Q ss_pred             cCCCeEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccC-CCC
Q 006909          277 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADV-RDV  352 (626)
Q Consensus       277 s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~-~~~  352 (626)
                      +|++.|++++.++.|.+||.++++.+..+...  ..+.++.+.| ++++++  +.++.|..||. +++.+- +... ...
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            46678999999999999999999999998743  3688999999 999888  35788999999 555543 3333 357


Q ss_pred             eEEEEEeeCCCEEEEEec-CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          353 ISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       353 i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      +.++.+.|+|+.+++.+. ++.+..+|..+ +.. ..+........+......+.+.++| .++++...++.|..||.. 
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l-~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNMKG-EVL-SKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECTTS-CEE-EEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT-
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeCCC-CEE-EEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCC-
Confidence            888999999999999887 77777777643 332 2222221111111345566788987 788999999999999976 


Q ss_pred             ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC-------CccceeeeccCCcEEEEec
Q 006909          432 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN-------SVRSCEHFFSEGVSVAVQW  502 (626)
Q Consensus       432 ~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~av~~  502 (626)
                      .....+... ...+.++.+.++|+.+++++.++.|..+|..++.........       .-.......++|.+++..+
T Consensus       155 G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          155 GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            444443322 245667888999999999998889999999977443322111       1123334556777776665

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.43  E-value=2.6e-10  Score=112.37  Aligned_cols=237  Identities=8%  Similarity=0.030  Sum_probs=164.6

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      +...+.+++++++|.++++...++.|..|+... ...                                           
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~-------------------------------------------   90 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIK-------------------------------------------   90 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE-------------------------------------------
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEE-------------------------------------------
Confidence            446799999999999888877788899998652 110                                           


Q ss_pred             CceeeccCccceEEEEEcCCCeE-EEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          260 PLQELHGHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~~l-~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                       ...+......+.++++.+++.| ++...++.|.+||. +++.....  .....+.++++.+ +++++++...++.|..|
T Consensus        91 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~  167 (299)
T 2z2n_A           91 -EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRI  167 (299)
T ss_dssp             -EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred             -EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEE
Confidence             0011123456889999998844 44556788999998 55444322  2345789999998 88888877777899999


Q ss_pred             eCCCCeEEEe--ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          337 GVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       337 d~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      |. +++....  ......+..++++++|+..++...++.|.+||. ++....  ....    .....+.+++++++| .+
T Consensus       168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~~~~g-~l  238 (299)
T 2z2n_A          168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE--FKIP----TPNARPHAITAGAGI-DL  238 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECSTT-CE
T ss_pred             cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE--EECC----CCCCCceeEEECCCC-CE
Confidence            99 6665543  233456889999999987666666889999998 444321  2111    123678999999997 56


Q ss_pred             EEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          415 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +++...++.|.+||.......+....+...+.++++ ++|++.++.+ .+.|..++..+.
T Consensus       239 ~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          239 WFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             EEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            666557899999997543344433334567899999 8888777765 567777777653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.43  E-value=2.2e-11  Score=120.49  Aligned_cols=198  Identities=12%  Similarity=0.018  Sum_probs=141.7

Q ss_pred             CCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      ..+..+..+.....+++|+|++  .++++..++.|..||..++  ...+ .+...+.+++++| +++++++...++.|.+
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLER   94 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEE
Confidence            3455666677788999999987  4778888999999999887  4444 4667899999999 9998887777789999


Q ss_pred             EeCCCCeEEEeccC-----CCCeEEEEEeeCCCEEEE----Eec-------------CCcEEEEEcCCCceeeeEEeecc
Q 006909          336 WGVCEKRVVDWADV-----RDVISAICYIPDGKGFIV----GSI-------------TGTCHFYKASGNDLKLEKVDFHD  393 (626)
Q Consensus       336 wd~~~~~~~~~~~~-----~~~i~~i~~sp~g~~l~~----g~~-------------dg~i~i~d~~~~~~~~~~~~~~~  393 (626)
                      ||..+++...+...     ...+..++++|+|+.+++    |+.             .+.|..++.. +..  .... . 
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~--~~~~-~-  169 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL--SAPI-R-  169 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE--EEEE-C-
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE--EEee-c-
Confidence            99987776543221     234678999999998877    331             2345555544 222  1111 1 


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-cc-----eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909          394 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DV-----IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  467 (626)
Q Consensus       394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~~-----~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~  467 (626)
                          .......++|+|+| +.+++.+.++.|.+|+.. +.     ...+  ..+...+..++++++|+++++.  ++.|.
T Consensus       170 ----~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~  240 (296)
T 3e5z_A          170 ----DRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVH  240 (296)
T ss_dssp             ----CCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred             ----CCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence                12567899999998 556777788999999975 21     2223  2245567789999999977766  78899


Q ss_pred             EEECCC
Q 006909          468 VWNYDE  473 (626)
Q Consensus       468 iwd~~~  473 (626)
                      +|+.+.
T Consensus       241 ~~~~~g  246 (296)
T 3e5z_A          241 VLTPDG  246 (296)
T ss_dssp             EECTTS
T ss_pred             EECCCC
Confidence            999874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=1.2e-11  Score=138.83  Aligned_cols=240  Identities=17%  Similarity=0.100  Sum_probs=157.7

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGED-----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      +|...+..++|||||++||.++.+     ..|++||+.++...                                     
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~-------------------------------------  202 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL-------------------------------------  202 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-------------------------------------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence            455578999999999999987654     35999999875321                                     


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCc--------------EEEeccCCCee--eEeec---CCCCeEEE
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKT--------------VRMWQVGCNQC--LNVFD---HHNYVTCV  314 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~--------------v~iwd~~~~~~--~~~~~---~~~~v~~~  314 (626)
                              . ...+...+..++|+|+..|+.++.++.              |++|++.+++.  ...+.   +...+..+
T Consensus       203 --------~-~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          203 --------A-DELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             --------E-EEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             --------C-ccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence                    1 111112235788998876666666554              89999987653  22332   33468899


Q ss_pred             EEeeCCCCEEEEEeCCC-----cEEEEeCCCC--e-EEEeccCCCCeEEEEEeeCCCEEEEEecC----CcEEEEEcCCC
Q 006909          315 QFNPIDDNYFISGSIDG-----KVRIWGVCEK--R-VVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGN  382 (626)
Q Consensus       315 ~~~p~~~~~l~s~s~dg-----~v~iwd~~~~--~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~d----g~i~i~d~~~~  382 (626)
                      .|+| ++++|+..+.++     .|++||+.++  + ...+..+...+... ++|+|+.|+..+.+    +.|.+||+.+.
T Consensus       274 ~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          274 SVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            9999 999888877544     7999999876  5 55555555555555 35899999888764    45999998764


Q ss_pred             ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--c-ceeeeeecCCCCCeEEEEEcCCCCEEEE
Q 006909          383 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--D-VIHKFKGLPKSGSQMSASFTTTGKHIIS  459 (626)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s  459 (626)
                      ......+..+     +...+..+.++.  ..++++...|+..+||...  . ....+.. ...+.+..++++|+++.|+.
T Consensus       352 ~~~~~~l~~~-----~~~~l~~~~~~~--~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~  423 (741)
T 1yr2_A          352 TPRFDTVVPE-----SKDNLESVGIAG--NRLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGIGSASGLSGRPGDRHAYL  423 (741)
T ss_dssp             SCEEEEEECC-----CSSEEEEEEEEB--TEEEEEEEETTEEEEEEEETTSCEEEECBC-SSSCEEEEEECCBTCSCEEE
T ss_pred             ccccEEEecC-----CCCeEEEEEEEC--CEEEEEEEECCEEEEEEEeCCCCceeeccC-CCCeEEEEeecCCCCCEEEE
Confidence            2011111111     124567778873  3688888889887776532  2 2222222 23567888999999886653


Q ss_pred             E----eCCccEEEEECCCC
Q 006909          460 I----GDDCRVYVWNYDEL  474 (626)
Q Consensus       460 ~----s~dg~I~iwd~~~~  474 (626)
                      .    ...++|++||+.++
T Consensus       424 ~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          424 SFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             EEEETTEEEEEEEEETTTT
T ss_pred             EEcCCCCCCEEEEEECCCC
Confidence            2    23489999999876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.39  E-value=7.2e-11  Score=114.79  Aligned_cols=195  Identities=7%  Similarity=0.015  Sum_probs=136.8

Q ss_pred             ceEEEEEcCCCeEEE-E-eCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 006909          270 DVLDLAWSNSNYLLS-C-SMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  346 (626)
Q Consensus       270 ~V~~l~~s~~~~l~s-~-s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~  346 (626)
                      ...++++++++.|+. + +.++.|.+||..++...... .+...+.++++.+ +++++++.. ++.|.+||..+......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            678899999885444 4 67789999998765433221 2335678999999 888666655 88999999887665543


Q ss_pred             cc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 006909          347 AD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  425 (626)
Q Consensus       347 ~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~  425 (626)
                      .. ....+..++++|+|+.+++...++.|.+|+..+......  . .    .....+.+++++++| +++++...++.|.
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~-~----~~~~~p~~i~~~~~g-~l~v~~~~~~~i~  174 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--P-F----TGLNDPDGVAVDNSG-NVYVTDTDNNRVV  174 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--C-C----CSCCSCCCEEECTTC-CEEEEEGGGTEEE
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--c-c----ccCCCceeEEEeCCC-CEEEEECCCCEEE
Confidence            32 235789999999998777777788999997554332111  1 1    112467889999997 5777777788999


Q ss_pred             EEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          426 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       426 iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +||................+..++++++|.++++...++.|++|+..+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            9997654333222223367889999999988888777899999998764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.36  E-value=1.8e-11  Score=124.00  Aligned_cols=187  Identities=5%  Similarity=0.006  Sum_probs=131.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      .++.+++++...++++|+.++ +++|++.+......  ....                                +.++..
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~--------------------------------~~~~~~   83 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT--SDST--------------------------------PLTFKW   83 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSC--------------------------------CCCCSE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--cccc--------------------------------cccceE
Confidence            689999999999999999986 66799875321000  0000                                011112


Q ss_pred             eeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          263 ELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                      . ..+.. |+.++| .+..|+++ .++.|++||+.+....... .+...+.++.+.+ .  .+++++.||.|.+||+.++
T Consensus        84 ~-~~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A           84 E-KEIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             E-EECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTC
T ss_pred             E-eeCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCC
Confidence            2 23566 999999 43477777 8899999999765544333 4667788887765 2  3888899999999999987


Q ss_pred             eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee-eeEEeecccc---ccCCCCeEEEEEcCCCCcEEEE
Q 006909          342 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRK---KTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       342 ~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      ....   +...|+|++|+|+|  +++|..||++++|+..+.... ...+......   ..+...|.++.|.+++ .++++
T Consensus       157 ~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~  230 (388)
T 1xip_A          157 STKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV  230 (388)
T ss_dssp             CEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred             cccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence            7654   45689999999999  788999999999998877642 2222111111   1245889999999986 55554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.35  E-value=1.8e-09  Score=110.06  Aligned_cols=245  Identities=7%  Similarity=-0.028  Sum_probs=155.7

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          186 TLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       186 ~l~fspdg~~Latgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      .++|||||++|+.+.          .++.|.+||..+.+........                                 
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~---------------------------------  116 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP---------------------------------  116 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC---------------------------------
Confidence            899999999988875          3678999999764332110000                                 


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEeC--CCcEEEeccCCCeeeEe-ecCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDG  331 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~--d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~s~dg  331 (626)
                         ......  +......++|+|+| +|+.+..  ++.|.++| .+++.+.. +.....   +.+.|.....+++.+.||
T Consensus       117 ---~~~~~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg  187 (373)
T 2mad_H          117 ---DAPRFD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQG  187 (373)
T ss_pred             ---Cccccc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCC
Confidence               000000  01234578999998 6666653  57899999 99998888 654433   455563456677788899


Q ss_pred             cEEEEeCCCCeEEEecc------CCCC-eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee-eEEeeccc----cccCC
Q 006909          332 KVRIWGVCEKRVVDWAD------VRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDR----KKTSG  399 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~~------~~~~-i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~~~~----~~~~~  399 (626)
                      .+.++|. +++......      ...+ .....+.+++..++..+..+.+.+.|+.+..... ..+.....    .....
T Consensus       188 ~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p  266 (373)
T 2mad_H          188 GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP  266 (373)
T ss_pred             CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceec
Confidence            9999999 776653211      1111 2335567777666666678899999997654322 12221110    00011


Q ss_pred             CCeEEEEEcCCCCcEEEEEeC----------CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-EEEEEe-CCccEE
Q 006909          400 NKITGIQFSRDESQRIMITSE----------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVY  467 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s-~dg~I~  467 (626)
                      .....+.++|++. +++++..          .+.|.++|..+....-... -......++|+|||+ +++++. .++.|.
T Consensus       267 ~g~~~~~~s~d~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~  344 (373)
T 2mad_H          267 GGWQQVAYLKSSD-GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLH  344 (373)
T ss_pred             CceEeEEECCCCC-EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence            2344578999984 5555432          4689999987544332221 334688999999999 777777 489999


Q ss_pred             EEECCCCC
Q 006909          468 VWNYDELC  475 (626)
Q Consensus       468 iwd~~~~~  475 (626)
                      ++|..++.
T Consensus       345 ViD~~t~~  352 (373)
T 2mad_H          345 IYDAGAGD  352 (373)
T ss_pred             EEECCCCC
Confidence            99999863

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.35  E-value=4.5e-10  Score=116.28  Aligned_cols=239  Identities=11%  Similarity=0.076  Sum_probs=160.8

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      .....|+|+|+|+++++...++.|++||..++...                                             
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------------------------------  165 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------------------------------  165 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------------------------
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------------------------
Confidence            35889999999998888777899999998763221                                             


Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeCCC--cEEEeccCCCeeeEee----c-CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVF----D-HHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~--~v~iwd~~~~~~~~~~----~-~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                       .+........ ++|++++ .|+++..++  .|.+++...+.....+    . ....+.+++++| ++..|+.+..++.|
T Consensus       166 -~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I  242 (409)
T 3hrp_A          166 -TVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNF  242 (409)
T ss_dssp             -EEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEE
T ss_pred             -EeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcE
Confidence             1111122233 8899987 777777765  7888888766554444    2 456778999999 55666667778899


Q ss_pred             EEEeCCCCeEEEe----c-cCCCCe--EEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeecccc---------c
Q 006909          334 RIWGVCEKRVVDW----A-DVRDVI--SAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK---------K  396 (626)
Q Consensus       334 ~iwd~~~~~~~~~----~-~~~~~i--~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~  396 (626)
                      +.||..++.....    . ......  ..++|+|+ +..+++-..++.|+.|+......   .+.-....         .
T Consensus       243 ~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~  319 (409)
T 3hrp_A          243 GRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREE  319 (409)
T ss_dssp             EEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGG
T ss_pred             EEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccc
Confidence            9999987765433    1 111112  38999995 55555556678899998765421   11111000         0


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEeCCc-ceeeeeecC-------------CCCCeEEEEEcCCCCEEEEEe
Q 006909          397 TSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVD-VIHKFKGLP-------------KSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       397 ~~~~~i~~l~~s~~~~~~l~~~s-~dg~i~iwd~~~-~~~~~~~~~-------------~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      ..-.....++++|+| .++++-. .++.|+.|+..+ .+..+.+..             .-.....++++++|.++++-.
T Consensus       320 ~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~  398 (409)
T 3hrp_A          320 ALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA  398 (409)
T ss_dssp             CBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred             cEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence            012457899999998 5777777 789999999543 333343321             024588999999988888888


Q ss_pred             CCccEEEEECC
Q 006909          462 DDCRVYVWNYD  472 (626)
Q Consensus       462 ~dg~I~iwd~~  472 (626)
                      .++.|+.++++
T Consensus       399 ~n~~Ir~i~~e  409 (409)
T 3hrp_A          399 WGKAIRKYAVE  409 (409)
T ss_dssp             TTCEEEEEEEC
T ss_pred             CCCeEEEEEeC
Confidence            88899888753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.33  E-value=1.1e-09  Score=108.33  Aligned_cols=229  Identities=12%  Similarity=0.088  Sum_probs=151.0

Q ss_pred             cccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          179 AHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       179 ~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .+..---+..|+|++ .++++...++.|..||..++..                                          
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------------------------   47 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------------------------------------------   47 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------------------------------------------
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------------------------------------------
Confidence            344456688899965 4666666788999999876321                                          


Q ss_pred             CCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecC-----CCCeEEEEEeeCCCCEEEEEeCC--
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSID--  330 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~s~s~d--  330 (626)
                          ..+ .+...+.++++++++.|+.+. +..|.+||..+++.......     ...++.++++| +++++++....  
T Consensus        48 ----~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~  120 (297)
T 3g4e_A           48 ----QRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEET  120 (297)
T ss_dssp             ----EEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCS
T ss_pred             ----EEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCccc
Confidence                111 234578999999998666665 56799999988776443321     23578999999 88877654321  


Q ss_pred             ---------CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEE-EecCCcEEEEEcC--CCceeeeEEeeccccccC
Q 006909          331 ---------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKAS--GNDLKLEKVDFHDRKKTS  398 (626)
Q Consensus       331 ---------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~-g~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~  398 (626)
                               +.|..++.. ++...........+.++|+|+++.|++ .+.++.|.+|++.  ++..........  ....
T Consensus       121 ~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~--~~~~  197 (297)
T 3g4e_A          121 APAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK--LEKE  197 (297)
T ss_dssp             BTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE--CCGG
T ss_pred             ccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE--CCCC
Confidence                     344445543 344444444456789999999997755 4557899999974  443221111111  1111


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEc-CCCCEEEEEeC
Q 006909          399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFT-TTGKHIISIGD  462 (626)
Q Consensus       399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s-p~g~~l~s~s~  462 (626)
                      ...+..+++.++| +++++...++.|.+||..+.  ...+..  ....+++++|. |+++.|+.++.
T Consensus       198 ~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          198 EQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             GCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence            2567899999998 67777778889999997633  333433  44678999998 88887766553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.31  E-value=6.5e-10  Score=110.41  Aligned_cols=234  Identities=12%  Similarity=0.096  Sum_probs=157.0

Q ss_pred             ccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          176 EIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      .+..+........|+|+|+ +++++..++.|..|+... .                                        
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~----------------------------------------   77 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T----------------------------------------   77 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C----------------------------------------
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C----------------------------------------
Confidence            3445556678899999999 667777789999998732 1                                        


Q ss_pred             cccCCCceeeccCccceEEEEEcCCCeEEEEeC-CCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEE--
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCSM-DKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFIS--  326 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s--  326 (626)
                            ...+..+...+..++++++|.|+++.. ++.|.+|+.. ++......     ....+..+++.| +++++++  
T Consensus        78 ------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~  149 (305)
T 3dr2_A           78 ------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDP  149 (305)
T ss_dssp             ------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECC
T ss_pred             ------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCc
Confidence                  223334556789999999986666654 4789999986 55433222     123567899999 9998886  


Q ss_pred             --EeC-------------CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC------CcEEEEEcCCCcee
Q 006909          327 --GSI-------------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLK  385 (626)
Q Consensus       327 --~s~-------------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d------g~i~i~d~~~~~~~  385 (626)
                        |..             .+.|..+|..+++..... .......++|+|+++.|+++...      +.|.+|++......
T Consensus       150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~  228 (305)
T 3dr2_A          150 PFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH  228 (305)
T ss_dssp             SGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEE
T ss_pred             CCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc
Confidence              332             256888888777665544 44567889999999988887765      78999998765421


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          386 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       386 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                      ........    ....+.++++.++| + |.++..+ .|.+|+... ....+..  . ..+..++|+|+++.|+.++.++
T Consensus       229 ~~~~~~~~----~~~~pdgi~~d~~G-~-lwv~~~~-gv~~~~~~g~~~~~~~~--~-~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          229 DRRHFASV----PDGLPDGFCVDRGG-W-LWSSSGT-GVCVFDSDGQLLGHIPT--P-GTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             EEEEEECC----SSSCCCSEEECTTS-C-EEECCSS-EEEEECTTSCEEEEEEC--S-SCCCEEEECTTSCEEEEEETTE
T ss_pred             CCeEEEEC----CCCCCCeEEECCCC-C-EEEecCC-cEEEECCCCCEEEEEEC--C-CceeEEEEeCCCCEEEEEcCCe
Confidence            11111111    12445678999998 4 4444444 599999753 2333332  2 2588999999999888887654


Q ss_pred             cEEEEE
Q 006909          465 RVYVWN  470 (626)
Q Consensus       465 ~I~iwd  470 (626)
                       ++.++
T Consensus       299 -l~~~~  303 (305)
T 3dr2_A          299 -LWMLP  303 (305)
T ss_dssp             -EEEEE
T ss_pred             -EEEEE
Confidence             44444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.31  E-value=2.8e-09  Score=105.01  Aligned_cols=235  Identities=7%  Similarity=0.078  Sum_probs=160.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      +...+.+++++++|+++++...++.|..||.. +....                                          
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~------------------------------------------   96 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE------------------------------------------   96 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE------------------------------------------
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE------------------------------------------
Confidence            34678999999999988877667889998876 32110                                          


Q ss_pred             CceeeccCccceEEEEEcCCCeE-EEEeCCCcEEEeccCCCeeeEe-ec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          260 PLQELHGHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQCLNV-FD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~~l-~s~s~d~~v~iwd~~~~~~~~~-~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                        ..+......+.++++.+++.+ ++...++.|..+|.. ++.... +. ....+.++++.+ +++++++...++.|..+
T Consensus        97 --~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           97 --YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRI  172 (300)
T ss_dssp             --EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred             --ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEE
Confidence              011112356889999988844 444447889999987 555432 22 345789999998 88877776667889999


Q ss_pred             eCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          337 GVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       337 d~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      |. +++.....  .....+..++++++|+..++....+.|.+|+.. +....  ....    .....+.++++.++| .+
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~--~~~~----~~~~~~~~i~~d~~g-~l  243 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GEISE--YDIP----TPNARPHAITAGKNS-EI  243 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEE--EECS----STTCCEEEEEECSTT-CE
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-CcEEE--EECC----CCCCCceEEEECCCC-CE
Confidence            98 55544432  234568899999999766666667789999983 33221  1111    123578999999997 56


Q ss_pred             EEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          415 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      +++...++.|..||.......+........+.+++++++|++.++.. . .|..++.+
T Consensus       244 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          244 WFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             EEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            66666679999999754444443333446688999999998766655 4 77777653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.30  E-value=3.5e-10  Score=126.91  Aligned_cols=194  Identities=12%  Similarity=0.068  Sum_probs=126.2

Q ss_pred             CccceEEEEEcCCC-eEEEEeCC-----CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc--------
Q 006909          267 HKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK--------  332 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~s~s~d-----~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~--------  332 (626)
                      |...+..++||||| +|+.++.+     .+|++||+.+++.+....+...+..++|+| + +.|+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence            44578899999998 66655443     469999999998765432222235789999 8 88888876654        


Q ss_pred             ------EEEEeCCCCe---EEEec--cCCCCeEEEEEeeCCCEEEEEecCC-----cEEEEEcCCCcee-eeEEeecccc
Q 006909          333 ------VRIWGVCEKR---VVDWA--DVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLK-LEKVDFHDRK  395 (626)
Q Consensus       333 ------v~iwd~~~~~---~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg-----~i~i~d~~~~~~~-~~~~~~~~~~  395 (626)
                            |++|++.++.   .....  .+...+..+.|+|||++|+..+.++     .|++||+.++... ...+....  
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--  316 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL--  316 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS--
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC--
Confidence                  8899987654   22222  2233588999999999999887654     8999999876322 22222111  


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEE
Q 006909          396 KTSGNKITGIQFSRDESQRIMITSE----DSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV  468 (626)
Q Consensus       396 ~~~~~~i~~l~~s~~~~~~l~~~s~----dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~i  468 (626)
                          ..+.... +|+| ..|+..+.    ++.|.+||+...   ...+. ..+...+..++|+ ++.++++...|+..+|
T Consensus       317 ----~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  388 (741)
T 1yr2_A          317 ----KAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQV  388 (741)
T ss_dssp             ----SSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred             ----CceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence                2334443 4787 45555554    346999997653   12222 2234456677887 5677888888887777


Q ss_pred             EECC
Q 006909          469 WNYD  472 (626)
Q Consensus       469 wd~~  472 (626)
                      |.++
T Consensus       389 ~~~~  392 (741)
T 1yr2_A          389 LAFD  392 (741)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.28  E-value=2.9e-10  Score=126.48  Aligned_cols=239  Identities=14%  Similarity=0.119  Sum_probs=153.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEE-----eCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          179 AHKGCIWTLKFSPDGRYLASG-----GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latg-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      +|...+..++|||||++||-+     +.+..|++||+.+++...                                    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------  169 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE------------------------------------  169 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE------------------------------------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc------------------------------------
Confidence            567789999999999988843     333579999998853210                                    


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCC-------------cEEEeccCCCee--eEeec----CCCCeEE
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK-------------TVRMWQVGCNQC--LNVFD----HHNYVTC  313 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~-------------~v~iwd~~~~~~--~~~~~----~~~~v~~  313 (626)
                              ..+.  ......++|+ |+ .|+.++.+.             .|++|++.+++.  ...+.    +...+..
T Consensus       170 --------~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~  238 (693)
T 3iuj_A          170 --------TPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVG  238 (693)
T ss_dssp             --------EEEE--EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEE
T ss_pred             --------cccC--CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEE
Confidence                    0111  1113467899 87 677777664             399999987653  23332    3446788


Q ss_pred             EEEeeCCCCEEEEEeC----CCcEEEEeCCCC--eEEEeccCCCCeEEEEEeeCCCEEEEEec----CCcEEEEEcCCCc
Q 006909          314 VQFNPIDDNYFISGSI----DGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGND  383 (626)
Q Consensus       314 ~~~~p~~~~~l~s~s~----dg~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~g~~----dg~i~i~d~~~~~  383 (626)
                      +.|+| ++++|+....    .+.|+++|+.++  ....+..+....... ++++|..|+..+.    .+.|..+++.+..
T Consensus       239 ~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~  316 (693)
T 3iuj_A          239 ATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG  316 (693)
T ss_dssp             EEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             EEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            99999 9988765432    248999999775  555566666655555 6777777665543    2578899988764


Q ss_pred             ee-eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909          384 LK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI  460 (626)
Q Consensus       384 ~~-~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~  460 (626)
                      .. ...+..+.      ..+.  .|++++..++++...++  .|++||..............+.+..+.++++++.|+..
T Consensus       317 ~~~~~~l~~~~------~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~  388 (693)
T 3iuj_A          317 PAHWRDLIPER------QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFG  388 (693)
T ss_dssp             GGGCEEEECCC------SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred             ccccEEEecCC------CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEE
Confidence            31 11222221      2333  78888744444444554  68889876432222222244567777888888776655


Q ss_pred             eCC----ccEEEEECCCC
Q 006909          461 GDD----CRVYVWNYDEL  474 (626)
Q Consensus       461 s~d----g~I~iwd~~~~  474 (626)
                      ..+    ++|+.||+.++
T Consensus       389 ~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          389 FENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             EECSSSCCEEEEECTTTC
T ss_pred             ecCCCCCCEEEEEECCCC
Confidence            444    78999999776

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.28  E-value=7.6e-10  Score=111.62  Aligned_cols=255  Identities=10%  Similarity=0.019  Sum_probs=160.6

Q ss_pred             EEEcCCCCEEEEEeC-----CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          187 LKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       187 l~fspdg~~Latgs~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      ....|+++.++....     ++.|.+.|..+.+                                             .+
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~---------------------------------------------v~   72 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR---------------------------------------------VI   72 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE---------------------------------------------EE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCe---------------------------------------------EE
Confidence            445789997777765     6789999998743                                             23


Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEe----------CCCcEEEeccCCCeeeEeecCC--------CCeEEEEEeeCCCC
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDN  322 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s----------~d~~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~p~~~~  322 (626)
                      ..+..-..+ . ++++|++ +++.+.          .++.|.+||..+++.+..+...        .....++|+| +++
T Consensus        73 ~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk  149 (386)
T 3sjl_D           73 GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGK  149 (386)
T ss_dssp             EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSS
T ss_pred             EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCC
Confidence            344333334 3 9999998 555543          3678999999999998877422        2566799999 999


Q ss_pred             EEEEEeC--CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC-CceeeeEEeeccccccCC
Q 006909          323 YFISGSI--DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSG  399 (626)
Q Consensus       323 ~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~  399 (626)
                      +++++..  ++.|.++|+.+++++......+.  ...+....+.+++.+.||.+.+.++.. +... ....  .......
T Consensus       150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~--~~~~~~~  224 (386)
T 3sjl_D          150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITHT--EVFHPED  224 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEEC--CCCSCTT
T ss_pred             EEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEE-Eeec--ceecccc
Confidence            9888764  68999999999998876654432  223333456777888899999999876 4432 1111  1111111


Q ss_pred             CCeE-EEEEc-CCCCcEEEEEeCCCcEEEEeCCcce----eeeeecC--------CCCCeEEEEEcCCCCEEEEEeC---
Q 006909          400 NKIT-GIQFS-RDESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD---  462 (626)
Q Consensus       400 ~~i~-~l~~s-~~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~--------~~~~v~~~~~sp~g~~l~s~s~---  462 (626)
                      .++. ...|. ++|  .++..+.+|.|.+.|.....    ..+....        .......++++++++.++....   
T Consensus       225 ~~~~~~~~~~~~dG--~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~  302 (386)
T 3sjl_D          225 EFLINHPAYSQKAG--RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD  302 (386)
T ss_dssp             SCBCSCCEEETTTT--EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred             ccccccceeEcCCC--cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence            2222 24564 565  34446668999999975321    2221000        1123335777999998888643   


Q ss_pred             -------CccEEEEECCCCCCCCCCccCCccceeeeccCCc
Q 006909          463 -------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV  496 (626)
Q Consensus       463 -------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~  496 (626)
                             .+.|.+.|+.+...............+.+++++.
T Consensus       303 ~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~  343 (386)
T 3sjl_D          303 EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK  343 (386)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSS
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCC
Confidence                   2579999998874433332222233345555554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.27  E-value=2.9e-09  Score=106.75  Aligned_cols=224  Identities=11%  Similarity=0.009  Sum_probs=147.0

Q ss_pred             cEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          183 CIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       183 ~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      ......|+|++. ++++...++.|..||..++..                                              
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------------------------   83 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK----------------------------------------------   83 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------------------------
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----------------------------------------------
Confidence            356788999755 666666788999999876321                                              


Q ss_pred             eeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecC-----CCCeEEEEEeeCCCCEEEEEeC------C
Q 006909          262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSI------D  330 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~s~s~------d  330 (626)
                      ..+ .+...+.+++|++++.++.++.++ |.+||..+++.......     ...+..++++| +++++++...      .
T Consensus        84 ~~~-~~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~  160 (326)
T 2ghs_A           84 TVH-ALPFMGSALAKISDSKQLIASDDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGA  160 (326)
T ss_dssp             EEE-ECSSCEEEEEEEETTEEEEEETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTC
T ss_pred             EEE-ECCCcceEEEEeCCCeEEEEECCC-EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCc
Confidence            111 123578999999999666666554 99999988876443321     23588999999 8887765542      2


Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcC--CC-ceeeeEEeeccccccCCCCeEEEE
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKAS--GN-DLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      +.|..++  +++.............++|+|+|+.++++ +.++.|.+|++.  ++ ..........  .......+.+++
T Consensus       161 ~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~--~~~~~~~p~gi~  236 (326)
T 2ghs_A          161 GSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID--STGIKGGMDGSV  236 (326)
T ss_dssp             EEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE--CTTSSSEEEEEE
T ss_pred             eEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE--CCCCCCCCCeeE
Confidence            4566666  55555444444567889999999877665 456899999986  43 3211111100  011124567899


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEc-CCCCEEEEEeC
Q 006909          407 FSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFT-TTGKHIISIGD  462 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s-p~g~~l~s~s~  462 (626)
                      +.++| .++++...++.|.+||... ....+..  ....+.+++|+ ++++.|+.++.
T Consensus       237 ~d~~G-~lwva~~~~~~v~~~d~~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          237 CDAEG-HIWNARWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             ECTTS-CEEEEEETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEB
T ss_pred             ECCCC-CEEEEEeCCCEEEEECCCCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEec
Confidence            99998 5666666778999999742 2233332  34568999998 88887765543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.27  E-value=3.1e-09  Score=105.57  Aligned_cols=200  Identities=10%  Similarity=0.054  Sum_probs=133.8

Q ss_pred             eeccCccceEEEEEcCCCeEE-E-------EeCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCC-CCEEEEEe
Q 006909          263 ELHGHKGDVLDLAWSNSNYLL-S-------CSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPID-DNYFISGS  328 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~~l~-s-------~s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~-~~~l~s~s  328 (626)
                      .+...-....+++|++++.++ +       +..++.|.+||..+++......     +...+.++++++ + ++++++ +
T Consensus        12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~-~   89 (314)
T 1pjx_A           12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVA-D   89 (314)
T ss_dssp             EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEE-E
T ss_pred             hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEE-E
Confidence            334444567899999888444 4       4678899999988877654332     446789999998 7 555554 4


Q ss_pred             CCCcEEEEeCCCCeEEEe-ccC-----CCCeEEEEEeeCCCEEEEEecC---------------CcEEEEEcCCCceeee
Q 006909          329 IDGKVRIWGVCEKRVVDW-ADV-----RDVISAICYIPDGKGFIVGSIT---------------GTCHFYKASGNDLKLE  387 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~~-~~~-----~~~i~~i~~sp~g~~l~~g~~d---------------g~i~i~d~~~~~~~~~  387 (626)
                      ..+.|.+||.. ++.... ...     ...+.+++++++|+.+++...+               +.|..|+.. +...  
T Consensus        90 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~--  165 (314)
T 1pjx_A           90 MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI--  165 (314)
T ss_dssp             TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE--
T ss_pred             CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE--
Confidence            44579999998 766554 321     2347899999999877776554               466666654 3221  


Q ss_pred             EEeeccccccCCCCeEEEEEc----CCCCcEEEEEeCCCcEEEEeCC-cce----eeeee-cCCC-CCeEEEEEcCCCCE
Q 006909          388 KVDFHDRKKTSGNKITGIQFS----RDESQRIMITSEDSKLRILDGV-DVI----HKFKG-LPKS-GSQMSASFTTTGKH  456 (626)
Q Consensus       388 ~~~~~~~~~~~~~~i~~l~~s----~~~~~~l~~~s~dg~i~iwd~~-~~~----~~~~~-~~~~-~~v~~~~~sp~g~~  456 (626)
                      .....      ......++++    |++..++++...++.|.+||.. ...    ..+.. ..+. ..+..++++++|++
T Consensus       166 ~~~~~------~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  239 (314)
T 1pjx_A          166 QVDTA------FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL  239 (314)
T ss_dssp             EEEEE------ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred             EeccC------CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence            11111      1356889999    9973344455678999999854 211    12222 1122 56788999999999


Q ss_pred             EEEEeCCccEEEEECCCC
Q 006909          457 IISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       457 l~s~s~dg~I~iwd~~~~  474 (626)
                      +++...++.|.+||..++
T Consensus       240 ~v~~~~~~~i~~~d~~~g  257 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EEEEETTTEEEEECTTCB
T ss_pred             EEEEcCCCEEEEEcCCCC
Confidence            888888899999998754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.24  E-value=2.7e-09  Score=105.48  Aligned_cols=196  Identities=15%  Similarity=0.048  Sum_probs=133.0

Q ss_pred             ccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909          268 KGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  345 (626)
Q Consensus       268 ~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~  345 (626)
                      ..-.-+..|+++ + .+++...++.|..||..++.. ..+.....+.+++++| +++++++ . ++.|.+||..+++...
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEE
Confidence            344567889985 4 556666788999999987765 4556677899999999 8885554 3 5689999998887654


Q ss_pred             eccC-----CCCeEEEEEeeCCCEEEEEecC---------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          346 WADV-----RDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       346 ~~~~-----~~~i~~i~~sp~g~~l~~g~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      +...     ...++.++++|+|+++++....         ..-.+|.+........ .. ..     ......++|+|++
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~-~~-----~~~pngi~~spdg  160 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YF-DQ-----VDISNGLDWSLDH  160 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EE-EE-----ESBEEEEEECTTS
T ss_pred             EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Ee-ec-----cccccceEEcCCC
Confidence            4322     2347889999999866554322         2345555543221111 11 11     1456789999998


Q ss_pred             CcEEEEEeCCCcEEEEeCC--cce----eeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          412 SQRIMITSEDSKLRILDGV--DVI----HKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       412 ~~~l~~~s~dg~i~iwd~~--~~~----~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ..++++.+.++.|.+|+..  +..    ..+.. ......+..++++++|++.++....+.|.+||..++
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence            5455666778999999853  221    12221 112356789999999998888888889999999865

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.23  E-value=1e-09  Score=110.72  Aligned_cols=257  Identities=13%  Similarity=0.087  Sum_probs=156.4

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCC
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS  242 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (626)
                      ...++..-..+ . +++||||++|+.+.          .++.|.+||..+.+.......+.+                  
T Consensus        71 v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g------------------  130 (386)
T 3sjl_D           71 VIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA------------------  130 (386)
T ss_dssp             EEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC------------------
T ss_pred             EEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc------------------
Confidence            33444444444 4 99999999887765          367899999988543211000000                  


Q ss_pred             CCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeC--CCcEEEeccCCCeeeEeecCCCCeEEEEEeeC
Q 006909          243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI  319 (626)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~--d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~  319 (626)
                                      .  +  .........++|+|+| +++.+..  ++.|.++|+.+++.+.++.....   ..+.|.
T Consensus       131 ----------------~--r--~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~  187 (386)
T 3sjl_D          131 ----------------P--R--FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT  187 (386)
T ss_dssp             ----------------C--C--CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE
T ss_pred             ----------------c--c--cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC
Confidence                            0  0  0001234568999998 6666653  68999999999999998865442   233453


Q ss_pred             CCCEEEEEeCCCcEEEEeCCC-CeEEEec-cC----CCCe-EEEEEe-eCCCEEEEEecCCcEEEEEcCCCceeee-EEe
Q 006909          320 DDNYFISGSIDGKVRIWGVCE-KRVVDWA-DV----RDVI-SAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLE-KVD  390 (626)
Q Consensus       320 ~~~~l~s~s~dg~v~iwd~~~-~~~~~~~-~~----~~~i-~~i~~s-p~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~  390 (626)
                      ..+.+++.+.||++.+.++.. +++.... ..    ...+ ....|. ++|++++ .+.+|.+++.|+.+...... .+.
T Consensus       188 g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~  266 (386)
T 3sjl_D          188 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE  266 (386)
T ss_dssp             ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE
T ss_pred             CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee
Confidence            667788888999999999876 5542211 11    1122 124554 5775544 56689999999977653222 222


Q ss_pred             eccc----cccCCCCeEEEEEcCCCCcEEEEEeC----------CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-
Q 006909          391 FHDR----KKTSGNKITGIQFSRDESQRIMITSE----------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-  455 (626)
Q Consensus       391 ~~~~----~~~~~~~i~~l~~s~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-  455 (626)
                      ....    ..-.......+++++++. ++++...          .+.|.++|+.+....-... -...+.++.+++|++ 
T Consensus       267 ~~~~~~~~~g~~p~g~q~~a~~~~~~-~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-vg~~~~~lavs~D~~~  344 (386)
T 3sjl_D          267 ALTEAERADGWRPGGWQQVAYHRALD-RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKP  344 (386)
T ss_dssp             SSCHHHHHTTEEECSSSCEEEETTTT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECSSSSC
T ss_pred             ccccccccccccCCCcceeeECCCCC-eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-CCCCcceEEECCCCCe
Confidence            1000    000113344577789874 5554432          3579999987543322221 123678999999997 


Q ss_pred             EEEEE-eCCccEEEEECCCCC
Q 006909          456 HIISI-GDDCRVYVWNYDELC  475 (626)
Q Consensus       456 ~l~s~-s~dg~I~iwd~~~~~  475 (626)
                      +|+++ ..++.|.++|..++.
T Consensus       345 ~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          345 LLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEcCCCCeEEEEECCCCc
Confidence            66665 458999999998863

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.23  E-value=1.5e-08  Score=103.32  Aligned_cols=215  Identities=9%  Similarity=-0.055  Sum_probs=133.6

Q ss_pred             EEEEcCCC-eEEEEe----------CCCcEEEeccCCCeeeEeecCC--------CCeEEEEEeeCCCCEEEEEeC--CC
Q 006909          273 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG  331 (626)
Q Consensus       273 ~l~~s~~~-~l~s~s----------~d~~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~p~~~~~l~s~s~--dg  331 (626)
                      .++++|++ .++.+.          .++.|.+||..+.+.+..+...        .....++|+| ++++|+++..  ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence            89999998 555554          3678999999988887766432        3456899999 9999998874  47


Q ss_pred             cEEEEeCCCCeEEEe-ccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC-eEEEEEc
Q 006909          332 KVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFS  408 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~s  408 (626)
                      .|.++| .+++++.. ......   +.+.|++ +.+++.+.||.+.++|. +++.... ....... ....+ .....+.
T Consensus       149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~-~~~~~~~-~~~~p~~~~~~~~  221 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA-GLVGAML-TAAQNLLTQPAQA  221 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE-Eeccccc-cCCcceeecceeE
Confidence            899999 99888766 555443   4455665 45666778999999999 6554321 1100000 01122 2335567


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcce----eeeeecC--------CCCCeEEEEEcCCCCEEEEEeC----------CccE
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRV  466 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~--------~~~~v~~~~~sp~g~~l~s~s~----------dg~I  466 (626)
                      +++..++++ +..+.+.+.|.....    ..+....        .......+.++|+++.++.+..          .+.|
T Consensus       222 ~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V  300 (373)
T 2mad_H          222 NKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV  300 (373)
T ss_pred             ecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence            776444444 467899999975321    1121100        1122344788999998887653          3579


Q ss_pred             EEEECCCCCCCCCCccCCccceeeeccCCc
Q 006909          467 YVWNYDELCFPSSKQKNSVRSCEHFFSEGV  496 (626)
Q Consensus       467 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~  496 (626)
                      .+.|..+...............+.|+|+|.
T Consensus       301 ~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~  330 (373)
T 2mad_H          301 TSVTGLVGQTSSQISLGHDVDAISVAQDGG  330 (373)
T ss_pred             EEEECCCCEEEEEEECCCCcCeEEECCCCC
Confidence            999998864322222222233445555555

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=1.1e-09  Score=110.58  Aligned_cols=245  Identities=12%  Similarity=0.057  Sum_probs=157.3

Q ss_pred             CcEEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          182 GCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      ..+..++++|+|+++++..  .++.++||.+.++..  ..|.                             ..       
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~--~~~p-----------------------------~~-------   58 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL--IPFP-----------------------------PQ-------   58 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE--EESC-----------------------------CC-------
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe--ecCC-----------------------------Cc-------
Confidence            6799999999999988864  234366666543211  0010                             00       


Q ss_pred             CceeeccCccceEEEEEcCCCeEEEEeC------CCcEEEeccCCCeeeEeecC-------CCCeEEEEEeeCCCCEEEE
Q 006909          260 PLQELHGHKGDVLDLAWSNSNYLLSCSM------DKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~s  326 (626)
                       .....+|...+..+++.+++.|+.+..      +..|.+||+.+++.+..+..       ...+..++++|.++..+++
T Consensus        59 -~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt  137 (343)
T 2qe8_A           59 -SGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS  137 (343)
T ss_dssp             -CSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred             -ccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE
Confidence             001224667899999999996665543      47899999999987776642       2356899999823444455


Q ss_pred             Ee---CCCcEEEEeCCCCeEEEeccC------------------------------CCCeEEEEEeeCCCEEEEEecCC-
Q 006909          327 GS---IDGKVRIWGVCEKRVVDWADV------------------------------RDVISAICYIPDGKGFIVGSITG-  372 (626)
Q Consensus       327 ~s---~dg~v~iwd~~~~~~~~~~~~------------------------------~~~i~~i~~sp~g~~l~~g~~dg-  372 (626)
                      ..   .++.|.+||+.+++.......                              ...+..|+|+|+|+.|+++...+ 
T Consensus       138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~  217 (343)
T 2qe8_A          138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST  217 (343)
T ss_dssp             ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred             cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence            54   578999999987776553311                              12368899999999999887766 


Q ss_pred             cEEEEEcC---CCcee----eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC-CcceeeeeecCCCCC
Q 006909          373 TCHFYKAS---GNDLK----LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG-VDVIHKFKGLPKSGS  444 (626)
Q Consensus       373 ~i~i~d~~---~~~~~----~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~~~~~  444 (626)
                      .+..++..   .....    ...+...+    +......++++++| .++++...++.|.+||. ......+........
T Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g----~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~  292 (343)
T 2qe8_A          218 SMYRIKSADLSNLQLTDAELGSKIERYS----EKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSW  292 (343)
T ss_dssp             EEEEEEHHHHTCTTCCHHHHHTTCEEEE----ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             eEEEEEHHHhcCCCCChhhhhcceEecc----cCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCceec
Confidence            44444432   11100    00000001    11356679999997 78888888999999998 322233332223457


Q ss_pred             eEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          445 QMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       445 v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      +.+++|.++++++++.+..+.+.+|.
T Consensus       293 p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          293 TDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             CCeeEECCCCcEEEEeCccccccccc
Confidence            89999999999888877655554443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.21  E-value=3.4e-09  Score=109.60  Aligned_cols=202  Identities=12%  Similarity=0.028  Sum_probs=141.0

Q ss_pred             cceEEEEEcCCCeE-EEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCeEEE
Q 006909          269 GDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVD  345 (626)
Q Consensus       269 ~~V~~l~~s~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg--~v~iwd~~~~~~~~  345 (626)
                      .....|+|++++.| ++...++.|++||..++............. ++|+| +++.|+++..++  .|.+++..++....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            46789999998854 455556899999999887766655434344 99999 899888888766  78889887654322


Q ss_pred             ec----c-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909          346 WA----D-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITS  419 (626)
Q Consensus       346 ~~----~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s  419 (626)
                      ..    . ....+.+++++|++..|+++..++.|+.||..+...... .....+.  ....+...++|+|++..++++-.
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~--~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS--LGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC--CCCSSCCEEEEETTTTEEEEEET
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC--CCCCccccEEEeCCCCEEEEEeC
Confidence            22    2 456678899999555666677788999999987653221 0001110  00011239999996546777777


Q ss_pred             CCCcEEEEeCCcceeeeeecC-------------CCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909          420 EDSKLRILDGVDVIHKFKGLP-------------KSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       420 ~dg~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~  474 (626)
                      .++.|+.|+.......+.+..             .-.....++++|+|+++++-+ .++.|+.|++.++
T Consensus       287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            789999999765444444421             023578999999999888877 8899999997665

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.19  E-value=1.6e-09  Score=109.75  Aligned_cols=134  Identities=7%  Similarity=0.028  Sum_probs=107.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .+.+ |+.|+|  |+++|+++ .++.|++||+.+..                                            
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~--------------------------------------------  117 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS--------------------------------------------  117 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT--------------------------------------------
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh--------------------------------------------
Confidence            4667 999999  99999999 88999999998732                                            


Q ss_pred             CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                       .......|...+.++.+.+.+ +++++.||.|.+||+.+++...   +...|+|++|+| +|  ++.|..||++++|+.
T Consensus       118 -~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~  189 (388)
T 1xip_A          118 -EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAW  189 (388)
T ss_dssp             -CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEE
T ss_pred             -ccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcC
Confidence             122344566678888877544 8889999999999999887654   456899999999 77  778999999999998


Q ss_pred             CCCeE--EE-e------c---cCCCCeEEEEEeeCCCEEEEE
Q 006909          339 CEKRV--VD-W------A---DVRDVISAICYIPDGKGFIVG  368 (626)
Q Consensus       339 ~~~~~--~~-~------~---~~~~~i~~i~~sp~g~~l~~g  368 (626)
                      ..+++  .. +      .   ++...|.+|+|.+++.++++-
T Consensus       190 ~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          190 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            88774  22 2      1   367889999999999888873

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.17  E-value=3.9e-08  Score=98.49  Aligned_cols=190  Identities=10%  Similarity=-0.001  Sum_probs=128.4

Q ss_pred             ceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec
Q 006909          270 DVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  347 (626)
Q Consensus       270 ~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  347 (626)
                      -..+.+|+|+ + .+++...++.|..||..+++.. .+.....+.+++++| +++++++. . ..|.+||..+++...+.
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence            4567889986 4 5666667889999999877643 344567899999999 88777654 3 44999999888765443


Q ss_pred             cC-----CCCeEEEEEeeCCCEEEEEec------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          348 DV-----RDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       348 ~~-----~~~i~~i~~sp~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      ..     ...+..+.++|+|+++++...      .+.|..++  ++..  ..+...      ......++|+|++..+++
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~--~~~~~~------~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV--TKLFAD------ISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE--EEEEEE------ESSEEEEEECTTSCEEEE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE--EEeeCC------CcccCCeEEcCCCCEEEE
Confidence            32     235889999999986655432      24555555  3322  111111      135678999999844445


Q ss_pred             EEeCCCcEEEEeCC--cc-e----eeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          417 ITSEDSKLRILDGV--DV-I----HKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       417 ~~s~dg~i~iwd~~--~~-~----~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      +.+.++.|.+||..  +. .    ..+.. ......+..++++++|++.++...++.|.+|+...
T Consensus       196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g  260 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  260 (326)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence            55667899999964  32 1    12222 11234567899999999888777778999999843

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.15  E-value=3.9e-09  Score=108.44  Aligned_cols=257  Identities=9%  Similarity=0.050  Sum_probs=160.6

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCC
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS  242 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (626)
                      ...++..-..+  .++++|||++|+.+.          .++.|.++|..+.+.......+.                   
T Consensus       111 vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g-------------------  169 (426)
T 3c75_H          111 ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD-------------------  169 (426)
T ss_dssp             EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT-------------------
T ss_pred             EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC-------------------
Confidence            33444333344  799999999877765          36789999998754321100000                   


Q ss_pred             CCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeC--CCcEEEeccCCCeeeEeecCCCCeEEEEEeeC
Q 006909          243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI  319 (626)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~--d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~  319 (626)
                                      . . .+ ........++|+|+| +|+.+..  ++.|.+.|+.+++.+..+.....   ....|.
T Consensus       170 ----------------~-~-r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~  227 (426)
T 3c75_H          170 ----------------A-P-RF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPA  227 (426)
T ss_dssp             ----------------C-C-CC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE
T ss_pred             ----------------c-c-cc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccC
Confidence                            0 0 00 001233467899998 6666653  57899999999999988865432   334452


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEe----ccC-CCC-eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeec
Q 006909          320 DDNYFISGSIDGKVRIWGVCEKRVVDW----ADV-RDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFH  392 (626)
Q Consensus       320 ~~~~l~s~s~dg~v~iwd~~~~~~~~~----~~~-~~~-i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~  392 (626)
                      ....+++.+.||++.+.+..++++...    ... ..+ ...+.+.+++..++..+..+.+.+.|..+...... .+...
T Consensus       228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~  307 (426)
T 3c75_H          228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL  307 (426)
T ss_dssp             ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred             CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence            346777778889888888866554421    111 111 12356789999888888899999999976543221 11111


Q ss_pred             cccc-c---CCCCeEEEEEcCCCCcEEEEEe---------CCCcEEEEeCCcce--eeeeecCCCCCeEEEEEcCCCC-E
Q 006909          393 DRKK-T---SGNKITGIQFSRDESQRIMITS---------EDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGK-H  456 (626)
Q Consensus       393 ~~~~-~---~~~~i~~l~~s~~~~~~l~~~s---------~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~g~-~  456 (626)
                      .... .   .......++++|++.+.+++..         .++.|.++|..+..  ..+..   ......+.|+|||+ +
T Consensus       308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~  384 (426)
T 3c75_H          308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPL  384 (426)
T ss_dssp             CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCE
T ss_pred             cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEE
Confidence            0000 0   0112223689999854444432         23579999987543  33332   22578899999999 8


Q ss_pred             EEEEe-CCccEEEEECCCCC
Q 006909          457 IISIG-DDCRVYVWNYDELC  475 (626)
Q Consensus       457 l~s~s-~dg~I~iwd~~~~~  475 (626)
                      ++++. .++.|.++|..+..
T Consensus       385 lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          385 LYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCC
T ss_pred             EEEEcCCCCeEEEEECCCCC
Confidence            88887 58999999999874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.05  E-value=4.6e-08  Score=99.24  Aligned_cols=190  Identities=10%  Similarity=0.099  Sum_probs=126.4

Q ss_pred             eEEEEEcCCCeEEEEeCC------CcEEEeccCCCeeeEeecCC----CCeEEEEEeeCCCCEEEEEe------------
Q 006909          271 VLDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH----NYVTCVQFNPIDDNYFISGS------------  328 (626)
Q Consensus       271 V~~l~~s~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~s~s------------  328 (626)
                      -..+...|+|.++++..+      +.|.+.|..+++.+..+...    ..-..+.|+| +++.+++..            
T Consensus       140 Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          140 LHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCC
T ss_pred             ccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccc
Confidence            445677899966665555      78999999999999888522    2234588899 999888875            


Q ss_pred             -------CCCcEEEEeCCCCeEEEeccCC---CCeEEEEE--eeCCCEEEEEec------CCcEEEEEcCCCceeeeE-E
Q 006909          329 -------IDGKVRIWGVCEKRVVDWADVR---DVISAICY--IPDGKGFIVGSI------TGTCHFYKASGNDLKLEK-V  389 (626)
Q Consensus       329 -------~dg~v~iwd~~~~~~~~~~~~~---~~i~~i~~--sp~g~~l~~g~~------dg~i~i~d~~~~~~~~~~-~  389 (626)
                             .+.+|.+||+.++++.......   .....+.|  +|+++++++++.      +++|.+|....+.....+ +
T Consensus       219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI  298 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI  298 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence                   3689999999988776655443   23445655  999999888875      568888777654433222 1


Q ss_pred             eeccccc------------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-----eeeeeecC------------
Q 006909          390 DFHDRKK------------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-----IHKFKGLP------------  440 (626)
Q Consensus       390 ~~~~~~~------------~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-----~~~~~~~~------------  440 (626)
                      .......            ........|.+++||..+.++.-..+.|.+||+.+.     ...+..-+            
T Consensus       299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~  378 (462)
T 2ece_A          299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK  378 (462)
T ss_dssp             EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred             eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence            1111000            002467889999998544444455789999997521     22221110            


Q ss_pred             CCCCeEEEEEcCCCCEEEEEe
Q 006909          441 KSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       441 ~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      -.+....+.++|||++|+++.
T Consensus       379 ~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          379 LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCCEEEEcCCCCEEEEEc
Confidence            011367899999999999987

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.05  E-value=1.3e-08  Score=104.62  Aligned_cols=216  Identities=13%  Similarity=0.085  Sum_probs=134.0

Q ss_pred             EEEEcCCC-eEEEEe----------CCCcEEEeccCCCeeeEeecCC--------CCeEEEEEeeCCCCEEEEEeC--CC
Q 006909          273 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG  331 (626)
Q Consensus       273 ~l~~s~~~-~l~s~s----------~d~~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~p~~~~~l~s~s~--dg  331 (626)
                      .++++|++ +|+.+.          .++.|.++|..+++.+..+...        .....+.|+| ++++++++..  ++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~  200 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP  200 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence            79999998 555554          4678999999999988877532        3456789999 9999998874  57


Q ss_pred             cEEEEeCCCCeEEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC-eEEEEEcC
Q 006909          332 KVRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFSR  409 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~s~  409 (626)
                      .|.+.|+.+.+++........   ....|++ ..+++.+.||.+.+.+..+++.... ..  ........+ ...+.+.+
T Consensus       201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~-~~--~~~~v~~~p~~~~~~~~~  274 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVT-NT--EVFHTEDELLINHPAFSL  274 (426)
T ss_dssp             EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE-EC--CCCSCTTSCBCSCCEECT
T ss_pred             eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE-ee--eeeccCCCceeeEeeecC
Confidence            899999999988765554332   3344544 5566777888888888854443211 10  000000111 12356788


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcce----eeeeecC--------CCCCeEEEEEcCCCCEEEEEeC----------CccEE
Q 006909          410 DESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRVY  467 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~--------~~~~v~~~~~sp~g~~l~s~s~----------dg~I~  467 (626)
                      ++. .++..+..+.|.+.|.....    ..+....        .......++++|+++.++....          ++.|.
T Consensus       275 dg~-~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs  353 (426)
T 3c75_H          275 RSG-RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV  353 (426)
T ss_dssp             TTC-EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CCC-EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence            874 55555678899999964321    1111100        0111223689999988777642          35799


Q ss_pred             EEECCCCCCCCCCccCCccceeeeccCCc
Q 006909          468 VWNYDELCFPSSKQKNSVRSCEHFFSEGV  496 (626)
Q Consensus       468 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~  496 (626)
                      +.|..+...............+.|+|+|.
T Consensus       354 VID~~T~kvv~~I~vg~~P~gia~spDg~  382 (426)
T 3c75_H          354 VLNAETGERINKIELGHEIDSINVSQDAE  382 (426)
T ss_dssp             EEETTTCCEEEEEEEEEEECEEEECCSSS
T ss_pred             EEECCCCeEEEEEECCCCcCeEEEccCCC
Confidence            99999874333222222233445555555

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.03  E-value=4.7e-08  Score=96.83  Aligned_cols=200  Identities=14%  Similarity=0.108  Sum_probs=132.4

Q ss_pred             CCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      ...+..+..+.......+|++++  ++++...++.|..|+. ++.......+...+..+++++ +++++++...++.|.+
T Consensus        34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITR  111 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEE
T ss_pred             CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEE
Confidence            34456666666778899999986  4667777899999998 454333334667789999999 8887766656678999


Q ss_pred             EeCCCCeEEEeccC-----CCCeEEEEEeeCCCEEEE----Eec-------------CCcEEEEEcCCCceeeeEEeecc
Q 006909          336 WGVCEKRVVDWADV-----RDVISAICYIPDGKGFIV----GSI-------------TGTCHFYKASGNDLKLEKVDFHD  393 (626)
Q Consensus       336 wd~~~~~~~~~~~~-----~~~i~~i~~sp~g~~l~~----g~~-------------dg~i~i~d~~~~~~~~~~~~~~~  393 (626)
                      |+.. ++...+...     ...+..++++|+|+.+++    |..             .+.|..||..++......   . 
T Consensus       112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~-  186 (305)
T 3dr2_A          112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---D-  186 (305)
T ss_dssp             ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---E-
T ss_pred             ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---c-
Confidence            9986 554433221     234678999999987776    332             245677776555433221   1 


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEeCCcce----eeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          394 RKKTSGNKITGIQFSRDESQRIMITSED------SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~d------g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                           ......++|+|++ +.|+++...      +.|.+|+.....    ..+.. .....+..++++++|++.++. .+
T Consensus       187 -----~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv~~-~~  258 (305)
T 3dr2_A          187 -----LDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWSSS-GT  258 (305)
T ss_dssp             -----ESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEECC-SS
T ss_pred             -----CCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEEec-CC
Confidence                 1456789999998 556665554      789999865321    11211 123445678999999955544 44


Q ss_pred             ccEEEEECCC
Q 006909          464 CRVYVWNYDE  473 (626)
Q Consensus       464 g~I~iwd~~~  473 (626)
                       .|.+|+.+.
T Consensus       259 -gv~~~~~~g  267 (305)
T 3dr2_A          259 -GVCVFDSDG  267 (305)
T ss_dssp             -EEEEECTTS
T ss_pred             -cEEEECCCC
Confidence             499999854

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.02  E-value=1.2e-08  Score=113.52  Aligned_cols=196  Identities=13%  Similarity=0.079  Sum_probs=127.7

Q ss_pred             cCccceEEEEEcCCC-eEEE-----EeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC--------
Q 006909          266 GHKGDVLDLAWSNSN-YLLS-----CSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--------  331 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s-----~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg--------  331 (626)
                      +|...+..++||||| +|+.     |+...+|++||+.+++.+...-.......++|+  +++.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL--GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE--TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe--CCCEEEEEEecCcccccccc
Confidence            355678899999998 5552     223357999999999876542111113567888  788888887774        


Q ss_pred             -----cEEEEeCCCCe----EEE-ecc-CCCCeEEEEEeeCCCEEEEEec----CCcEEEEEcCCCceeeeEEeeccccc
Q 006909          332 -----KVRIWGVCEKR----VVD-WAD-VRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKK  396 (626)
Q Consensus       332 -----~v~iwd~~~~~----~~~-~~~-~~~~i~~i~~sp~g~~l~~g~~----dg~i~i~d~~~~~~~~~~~~~~~~~~  396 (626)
                           .|++|++.+..    ++. ... +...+..+.|+|||++|+....    ...|+++|+.+.......+....   
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~---  280 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL---  280 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS---
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC---
Confidence                 39999987654    222 222 3445788999999999876543    24899999877643333332221   


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEeCCcce----eeeeecCCCCCeEEEEEcCCCCEEEEEeCCc---cE
Q 006909          397 TSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RV  466 (626)
Q Consensus       397 ~~~~~i~~l~~s~~~~~~l~~~s~d---g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg---~I  466 (626)
                         ...... ++++|..+++.+..+   +.|.++|+....    ..+..  +...+.  .|++++++|+....++   .|
T Consensus       281 ---~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          281 ---DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             ---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             ---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence               333443 666665666666554   678999976532    23333  444444  8899999888776543   78


Q ss_pred             EEEECCCC
Q 006909          467 YVWNYDEL  474 (626)
Q Consensus       467 ~iwd~~~~  474 (626)
                      ++|++.++
T Consensus       353 ~~~d~~g~  360 (693)
T 3iuj_A          353 EQFDYEGK  360 (693)
T ss_dssp             EEECTTSC
T ss_pred             EEEECCCC
Confidence            99998764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.94  E-value=8.4e-09  Score=104.15  Aligned_cols=243  Identities=6%  Similarity=-0.069  Sum_probs=145.2

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCC
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  243 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (626)
                      ..++..-..+  .+.|+|||++|+.+.          .++.|.+||..+++.                            
T Consensus        59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v----------------------------  108 (368)
T 1mda_H           59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP----------------------------  108 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE----------------------------
T ss_pred             EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE----------------------------
Confidence            3344333345  799999999888875          368899999998543                            


Q ss_pred             CceeecCCccccccCCCceeeccC-------ccceEEEEEcCCC-eEEEEeC--CCcEEE--eccCCCeeeEeecCCCCe
Q 006909          244 HVPVVIPDEVFQIEESPLQELHGH-------KGDVLDLAWSNSN-YLLSCSM--DKTVRM--WQVGCNQCLNVFDHHNYV  311 (626)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~s~~~-~l~s~s~--d~~v~i--wd~~~~~~~~~~~~~~~v  311 (626)
                                       +.++..+       ......++++|+| +++.+..  +..|.+  +|..+   +..+..... 
T Consensus       109 -----------------v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-  167 (368)
T 1mda_H          109 -----------------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-  167 (368)
T ss_dssp             -----------------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-
T ss_pred             -----------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-
Confidence                             2222211       1234578999998 6776653  467888  99987   444432221 


Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----CeEEE-----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC
Q 006909          312 TCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVD-----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  381 (626)
Q Consensus       312 ~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-----~~~~~-----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~  381 (626)
                        ..+.|.....+++.+.||.+.+.|+.+     ++...     +.-...+.   . .+++..++..+. +.+.+.|+.+
T Consensus       168 --~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~  240 (368)
T 1mda_H          168 --FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPA  240 (368)
T ss_dssp             --CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCS
T ss_pred             --eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCC
Confidence              223452445666777889988889876     44321     11112232   3 666777666666 9999999875


Q ss_pred             Cceee-eEEeeccc----cccCCCCeEEEEEcCCCCcEEEEEe---C-----CCcEEEEeCCcceeeeeecCCCCCeEEE
Q 006909          382 NDLKL-EKVDFHDR----KKTSGNKITGIQFSRDESQRIMITS---E-----DSKLRILDGVDVIHKFKGLPKSGSQMSA  448 (626)
Q Consensus       382 ~~~~~-~~~~~~~~----~~~~~~~i~~l~~s~~~~~~l~~~s---~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~  448 (626)
                      ..... ..+.+...    ..........+.++|++..++++..   .     ++.+.++|+.+....-... -......+
T Consensus       241 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~-vg~~p~gi  319 (368)
T 1mda_H          241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAI  319 (368)
T ss_dssp             SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEE
T ss_pred             CcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE-CCCCcceE
Confidence            43221 11211100    0000111222689999854444433   2     2456699987543222221 12257899


Q ss_pred             EEcCCCC-EEEEEe-CCccEEEEECCCCC
Q 006909          449 SFTTTGK-HIISIG-DDCRVYVWNYDELC  475 (626)
Q Consensus       449 ~~sp~g~-~l~s~s-~dg~I~iwd~~~~~  475 (626)
                      +|+|||+ .+++.. .++.|.++|+.+..
T Consensus       320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          320 IAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             EECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            9999998 455666 58999999999873

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.93  E-value=2.3e-07  Score=94.84  Aligned_cols=185  Identities=12%  Similarity=0.015  Sum_probs=117.0

Q ss_pred             CCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEE-EEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCe---
Q 006909          278 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI---  353 (626)
Q Consensus       278 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i---  353 (626)
                      .++.++.++.++.|..+|..+++.+..+.....+.+ ...   .+..++.++.++.|..+|..+++.+-.......+   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~  178 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL  178 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence            357888899999999999999998877754433322 222   2457888888999999999988866433332222   


Q ss_pred             ---EEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC---e-EEEEEcCCCCcEEEEEeCCCcEEE
Q 006909          354 ---SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK---I-TGIQFSRDESQRIMITSEDSKLRI  426 (626)
Q Consensus       354 ---~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---i-~~l~~s~~~~~~l~~~s~dg~i~i  426 (626)
                         .....  .+..+++++.++.+..+|..+++..................   + ...... +  ..+++++.++.+..
T Consensus       179 ~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          179 RGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTA  253 (376)
T ss_dssp             CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-T--TEEEEECTTSCEEE
T ss_pred             cCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-C--CEEEEEecCcEEEE
Confidence               11222  24578888899999999998877654321110000000000   0 011111 3  37888888999999


Q ss_pred             EeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       427 wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +|..+........  ......+..  ++..|+.++.++.|+.+|..++
T Consensus       254 ~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG  297 (376)
T 3q7m_A          254 LDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGG  297 (376)
T ss_dssp             EETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred             EECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence            9987665555442  223444443  4677888888999999998876

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.85  E-value=2.4e-07  Score=97.32  Aligned_cols=187  Identities=13%  Similarity=0.126  Sum_probs=128.7

Q ss_pred             CC-eEE-EEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEE-e-eCCCCEEEEEe------------------CCCcEE
Q 006909          279 SN-YLL-SCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQF-N-PIDDNYFISGS------------------IDGKVR  334 (626)
Q Consensus       279 ~~-~l~-s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~-~-p~~~~~l~s~s------------------~dg~v~  334 (626)
                      || +++ +...+..|.+.|+.+.++...+.  ....+..+++ . | ++.++++++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence            55 444 44556779999999999888553  4556889888 4 7 888888884                  245799


Q ss_pred             EEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC--------------------------------------cEEE
Q 006909          335 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--------------------------------------TCHF  376 (626)
Q Consensus       335 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg--------------------------------------~i~i  376 (626)
                      +.|..+.++............++++|+|+++++.+.+.                                      .+.+
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            99999988776555444567788999999999988553                                      2444


Q ss_pred             EEcCC--CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-----------eeeecCCCC
Q 006909          377 YKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----------KFKGLPKSG  443 (626)
Q Consensus       377 ~d~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-----------~~~~~~~~~  443 (626)
                      .|..+  .......+..       +....++.++|||...++++..+.+|.++|..+...           ......-..
T Consensus       259 ID~~~~~~~~~~~~Ipv-------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~  331 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  331 (595)
T ss_dssp             EECSGGGCCSSEEEEEE-------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred             EeCcccCCceeEEEEec-------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence            55444  1110111111       134567999999965566666789999999875421           111222345


Q ss_pred             CeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          444 SQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       444 ~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      ....++|+|+|...++.-.|++|.+||++.
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            688999999994444556799999999986

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.80  E-value=1.6e-08  Score=102.02  Aligned_cols=256  Identities=9%  Similarity=-0.051  Sum_probs=154.0

Q ss_pred             eEEEEeCCC----cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe----------CCCcEEEEeCCCCeEEEe
Q 006909          281 YLLSCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----------IDGKVRIWGVCEKRVVDW  346 (626)
Q Consensus       281 ~l~s~s~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~  346 (626)
                      .+++...++    +|.+.|..+++.+.++.....- .+.++| ++++++++.          .++.|.+||+.+.+.+..
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            344444444    7889999999999998633333 799999 998888876          368899999999888765


Q ss_pred             ccCC--------CCeEEEEEeeCCCEEEEEec--CCcEEE--EEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          347 ADVR--------DVISAICYIPDGKGFIVGSI--TGTCHF--YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       347 ~~~~--------~~i~~i~~sp~g~~l~~g~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      ....        .....+.++|||++++++..  ...+.+  +|+.+    ...+...+       .   +.+.|++...
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~-------~---~~~~p~g~~~  177 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSAS-------C---FHIHPGAAAT  177 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSS-------C---CCCEEEETTE
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCC-------c---eEEccCCCeE
Confidence            4322        34668999999999999875  356888  88766    22222211       1   2234555566


Q ss_pred             EEEEeCCCcEEEEeCCc-----ceeeee----ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC--
Q 006909          415 IMITSEDSKLRILDGVD-----VIHKFK----GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN--  483 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~-----~~~~~~----~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--  483 (626)
                      +++.+.|+.+.+.|...     ......    ......+.   . ++++..++..+. +.|.+.|+.+..........  
T Consensus       178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~  252 (368)
T 1mda_H          178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred             EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence            77777888888888764     211100    00112233   3 566776666666 99999998753211000000  


Q ss_pred             -----------CccceeeeccCCcEEEEecCCC---------CcccccccCCCccccCccccccCCCCcccCCCcccCCc
Q 006909          484 -----------SVRSCEHFFSEGVSVAVQWPGI---------GTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGS  543 (626)
Q Consensus       484 -----------~~~~~~~~~~~g~~~av~~s~~---------~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  543 (626)
                                 .-.....+++++..+-++..|+         +..++.+.....            ...+. -+....++
T Consensus       253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v------------v~~i~-vg~~p~gi  319 (368)
T 1mda_H          253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT------------SGPIS-NGHDSDAI  319 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE------------EECCE-EEEEECEE
T ss_pred             cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE------------EEEEE-CCCCcceE
Confidence                       0001134555555444433211         112222222111            11111 12247889


Q ss_pred             cccCCCCcccccCC-CCCCCCCCCcccC
Q 006909          544 WFSNDGPCRGSATW-PAEKLPLWDVTID  570 (626)
Q Consensus       544 ~~s~dg~~l~s~~~-~d~~i~vwd~~~~  570 (626)
                      +|+|||++++.+.+ .++.|.++|+.+.
T Consensus       320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          320 IAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             EECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            99999996655554 5789999999887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.79  E-value=1e-06  Score=88.73  Aligned_cols=202  Identities=6%  Similarity=0.005  Sum_probs=126.4

Q ss_pred             cceEEEEEcCCC-eEEEEe--CCCcEEEeccCCCeeeEee--------cCCCCeEEEEEeeCCCCEEEEEeC-----CCc
Q 006909          269 GDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVF--------DHHNYVTCVQFNPIDDNYFISGSI-----DGK  332 (626)
Q Consensus       269 ~~V~~l~~s~~~-~l~s~s--~d~~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~p~~~~~l~s~s~-----dg~  332 (626)
                      ..+..++++++| .+++..  .++.++||.+.+++.. .+        .+...+.++++++ +++++++-..     ++.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCe
Confidence            688999999998 445543  2343556655555433 22        1346799999999 7776665433     578


Q ss_pred             EEEEeCCCCeEEEeccC-------CCCeEEEEEeeCCCEEEEE-e---cCCcEEEEEcCCCceeeeEEee----------
Q 006909          333 VRIWGVCEKRVVDWADV-------RDVISAICYIPDGKGFIVG-S---ITGTCHFYKASGNDLKLEKVDF----------  391 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~~-------~~~i~~i~~sp~g~~l~~g-~---~dg~i~i~d~~~~~~~~~~~~~----------  391 (626)
                      |.+||+.++++......       ...+..++++|++..++++ .   .++.|.+||+.+++.... ...          
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~-~~~~~~~~~~~~~  173 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV-LQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE-CTTCTTTSCCSCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE-ecCCCcccccccc
Confidence            99999998885543222       2346889999865555444 4   578999999876653211 100          


Q ss_pred             ---ccccc----c------CCCCeEEEEEcCCCCcEEEEEeCCC-cEEEEeCCcc----------eeeeeecCCCCCeEE
Q 006909          392 ---HDRKK----T------SGNKITGIQFSRDESQRIMITSEDS-KLRILDGVDV----------IHKFKGLPKSGSQMS  447 (626)
Q Consensus       392 ---~~~~~----~------~~~~i~~l~~s~~~~~~l~~~s~dg-~i~iwd~~~~----------~~~~~~~~~~~~v~~  447 (626)
                         .+..-    .      ....+..|+|+|+| +.|+.+..++ .+..++....          ...+....+......
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence               00000    0      01346889999998 5666665554 6665553210          001111112335677


Q ss_pred             EEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          448 ASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       448 ~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++++++|+++++...++.|.+||..++
T Consensus       253 ia~d~~G~l~va~~~~~~V~~~d~~~G  279 (343)
T 2qe8_A          253 ISIDKDHNIYVGDLAHSAIGVITSADR  279 (343)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred             EEECCCCCEEEEccCCCeEEEEECCCC
Confidence            999999999999988999999998443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.76  E-value=1.1e-05  Score=77.72  Aligned_cols=195  Identities=8%  Similarity=-0.011  Sum_probs=124.9

Q ss_pred             cceEEEEEcCC-CeEE-EEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCeEE
Q 006909          269 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVV  344 (626)
Q Consensus       269 ~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l-~s~s~dg~v~iwd~~~~~~~  344 (626)
                      ..+..++|+++ +.|+ +-..++.|..++..++.....+. .......++++| ++..+ ++-...+.|.++++......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEe-cCCeEEEEECCCCEEEEEEcCCCCEE
Confidence            45788999985 4554 55557899999998665443333 225788999998 55544 45455678999998764433


Q ss_pred             EeccC-CCCeEEEEEeeCCCEEEEEec---CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909          345 DWADV-RDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  420 (626)
Q Consensus       345 ~~~~~-~~~i~~i~~sp~g~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~  420 (626)
                      ..... ......++++|++..|+.+..   .+.|..+++.......  +...     .......+++++++..++++-..
T Consensus       115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~--~~~~-----~~~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--LAQD-----NLGLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--EECT-----TCSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE--EEEC-----CCCCCcEEEEcCCCCEEEEEECC
Confidence            22222 256789999997666666554   3688888886543211  1111     12467899999987556666667


Q ss_pred             CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909          421 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       421 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~  474 (626)
                      .+.|.++|........... .......++..  +..|+.+. ..+.|.++|..++
T Consensus       188 ~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             CCEEEEEecCCCceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence            7899999976432211111 22345667654  45555444 5689999998876

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.75  E-value=2.6e-06  Score=84.85  Aligned_cols=257  Identities=13%  Similarity=0.067  Sum_probs=149.0

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      ...+++++++|+++.++..++.|..|+..++.........  .....               .         ........
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~---------------~---------~~~g~~~~   73 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYAS--PYWNK---------------A---------FCENSTDA   73 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESC--TTCCH---------------H---------HHTTCCCG
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEeccc--ccccc---------------c---------ccccccch
Confidence            3567889999997888888899999987653221110000  00000               0         00000000


Q ss_pred             eeccCccceEEEEEcC-CCeEEEEeCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeC-------
Q 006909          263 ELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-------  329 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~-------  329 (626)
                      ........+..+++.+ ++.|+.+...+.|..+|..++.......     .......+++.+.+++++++-..       
T Consensus        74 ~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~  153 (322)
T 2fp8_A           74 EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG  153 (322)
T ss_dssp             GGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred             hccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence            0001123578899997 7877777666668889887654322211     12356788888634565555322       


Q ss_pred             ----------CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCcee-eeEEeecccccc
Q 006909          330 ----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLK-LEKVDFHDRKKT  397 (626)
Q Consensus       330 ----------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~  397 (626)
                                ++.|..||..+++.......-.....++++|+|+.|+++ +..+.|..|++.+.... ...+. .  .  
T Consensus       154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~--~--  228 (322)
T 2fp8_A          154 VQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-K--I--  228 (322)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-E--C--
T ss_pred             cceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-e--C--
Confidence                      367888998777655443333456679999999977666 45689999998754221 11111 1  1  


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeC----------CCcEEEEeCCc-ceeeeeecCC--CCCeEEEEEcCCCCEEEEEeCCc
Q 006909          398 SGNKITGIQFSRDESQRIMITSE----------DSKLRILDGVD-VIHKFKGLPK--SGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~----------dg~i~iwd~~~-~~~~~~~~~~--~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                       .. ...+++.++| .++++...          .+.|..+|... ....+.....  ...+..+++ .++++.++....+
T Consensus       229 -~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~  304 (322)
T 2fp8_A          229 -PN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG  304 (322)
T ss_dssp             -SS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred             -CC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence             13 7889999998 45555443          46788888642 2333332211  234666666 4566666656678


Q ss_pred             cEEEEECCCC
Q 006909          465 RVYVWNYDEL  474 (626)
Q Consensus       465 ~I~iwd~~~~  474 (626)
                      .|.++++...
T Consensus       305 ~i~~~~~~~~  314 (322)
T 2fp8_A          305 SVGILVYDKK  314 (322)
T ss_dssp             EEEEEEC---
T ss_pred             ceEEEecccc
Confidence            8999998653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.73  E-value=1.3e-06  Score=96.37  Aligned_cols=218  Identities=10%  Similarity=0.049  Sum_probs=136.0

Q ss_pred             CCeEEEEeC------CCcEEEeccCCCeeeEeecCCCC---------------------------------eEEEEEeeC
Q 006909          279 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNY---------------------------------VTCVQFNPI  319 (626)
Q Consensus       279 ~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~~~---------------------------------v~~~~~~p~  319 (626)
                      ++.++.++.      ++.|+.+|..+|+.+..+.....                                 ...++++| 
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-  252 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-  252 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-
Confidence            455555543      68999999999999877742111                                 12567888 


Q ss_pred             CCCEEEEEeCCC-------------------cEEEEeCCCCeEEEecc---CC-------CCeEEEEEeeCC---CEEEE
Q 006909          320 DDNYFISGSIDG-------------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDG---KGFIV  367 (626)
Q Consensus       320 ~~~~l~s~s~dg-------------------~v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g---~~l~~  367 (626)
                      +++.++.++.++                   .|..+|..+++.+-...   +.       .....+....+|   ..+++
T Consensus       253 ~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~  332 (677)
T 1kb0_A          253 ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH  332 (677)
T ss_dssp             TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence            788888877654                   49999999988763221   21       123333444577   68899


Q ss_pred             EecCCcEEEEEcCCCceeeeEEeecccc-----ccCCC------------------------CeEEEEEcCCCCcEEEEE
Q 006909          368 GSITGTCHFYKASGNDLKLEKVDFHDRK-----KTSGN------------------------KITGIQFSRDESQRIMIT  418 (626)
Q Consensus       368 g~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~------------------------~i~~l~~s~~~~~~l~~~  418 (626)
                      ++.+|.++++|..+++..... .+....     .....                        .-..++++|++ .++++.
T Consensus       333 ~~~~G~l~~lD~~tG~~l~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~  410 (677)
T 1kb0_A          333 APKNGFFFVLDRTNGKFISAK-NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLP  410 (677)
T ss_dssp             CCTTSEEEEEETTTCCEEEEE-ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred             ECCCCEEEEEECCCCCEeccc-cccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEe
Confidence            999999999999998875432 111000     00000                        01257888886 466554


Q ss_pred             eC-------------------------------------------CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC
Q 006909          419 SE-------------------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK  455 (626)
Q Consensus       419 s~-------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~  455 (626)
                      ..                                           .+.|..||..+........ +..++....+...+.
T Consensus       411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~  489 (677)
T 1kb0_A          411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGN  489 (677)
T ss_dssp             EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTT
T ss_pred             ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCC
Confidence            32                                           2789999988665555442 233444555667788


Q ss_pred             EEEEEeCCccEEEEECCCCCCCCCCcc--CCccceeeeccCCcEEEE
Q 006909          456 HIISIGDDCRVYVWNYDELCFPSSKQK--NSVRSCEHFFSEGVSVAV  500 (626)
Q Consensus       456 ~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~g~~~av  500 (626)
                      .++.++.||.+++||..++........  .....-..+..+|....+
T Consensus       490 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            999999999999999998854332221  112223344566654433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.73  E-value=3.1e-06  Score=80.68  Aligned_cols=209  Identities=11%  Similarity=0.026  Sum_probs=137.0

Q ss_pred             cccccccccC--cEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          173 TSQEIQAHKG--CIWTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       173 ~~~~l~~H~~--~V~~l~fspdg~~Latgs~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      ..+++ .|..  ....+.|+|++.+.++.+.  ++.|.+.|+.+++......                            
T Consensus        11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~----------------------------   61 (266)
T 2iwa_A           11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK----------------------------   61 (266)
T ss_dssp             EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE----------------------------
T ss_pred             EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe----------------------------
Confidence            33444 3554  3679999998765555543  5799999999865422110                            


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCC-CCeEEEEEeeCCCCEEEEE
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~  327 (626)
                                     +..+ .....+++..+...++.-.++.+.++|..+.+.+..+... ..  ...+++ +++.++.+
T Consensus        62 ---------------l~~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~~l~vs  122 (266)
T 2iwa_A           62 ---------------MDDS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGKILYGS  122 (266)
T ss_dssp             ---------------CCTT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSSSEEEE
T ss_pred             ---------------cCCC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCCEEEEE
Confidence                           1111 1223456554335555667899999999999999988644 32  234556 67766666


Q ss_pred             eCCCcEEEEeCCCCeEEEeccCC------CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc-------
Q 006909          328 SIDGKVRIWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------  394 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~~~~~~------~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-------  394 (626)
                      ..++.|.++|..+.+........      ..++.+.|. +|...+....++.|.+.|..+++... .+.+.+.       
T Consensus       123 ~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~-~I~~~g~~~~~~~~  200 (266)
T 2iwa_A          123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLG-WILLPNLRKKLIDE  200 (266)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE-EEECHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE-EEECCCcccccccc
Confidence            67889999999987766543321      236678887 77544444467899999999887633 3433211       


Q ss_pred             cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          395 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       395 ~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      .........+|+|+|++..+++++...+++.+.++..
T Consensus       201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            1112246789999999877777888889998888643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.73  E-value=6.7e-09  Score=105.96  Aligned_cols=219  Identities=11%  Similarity=0.027  Sum_probs=113.1

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccce
Q 006909          192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV  271 (626)
Q Consensus       192 dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  271 (626)
                      ++..+++++.||.|..||..+++..                                             ..+..  +.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~---------------------------------------------W~~~~--~~~   40 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIK---------------------------------------------WTLKE--DPV   40 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEE---------------------------------------------EEEEC--CCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE---------------------------------------------EEecC--CCc
Confidence            5778999999999999999886442                                             11111  122


Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCC--CeE-EEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec
Q 006909          272 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  347 (626)
Q Consensus       272 ~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~--~v~-~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  347 (626)
                      .+..+..++ .+++++.|+.|+.||..+|+.+..+....  .+. +..+.  .+..+++++.++.|+.||..+++.+-..
T Consensus        41 ~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~  118 (369)
T 2hz6_A           41 LQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL  118 (369)
T ss_dssp             CCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC--------
T ss_pred             eecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence            222233445 67777899999999999888776654221  110 00111  3456788888999999999998876433


Q ss_pred             cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC--CcEEEEEeCCCcEE
Q 006909          348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLR  425 (626)
Q Consensus       348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~--~~~l~~~s~dg~i~  425 (626)
                      ....   ...++|++..+++++.++.|+.||..+++..... ....        .....+.++.  ...+++++.+|.|.
T Consensus       119 ~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~-~~~~--------~~~~~~~~~~~~~~~v~~~~~dg~v~  186 (369)
T 2hz6_A          119 SSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA-TYFD--------YAASLPEDDVDYKMSHFVSNGDGLVV  186 (369)
T ss_dssp             -----------------EEEEEEEEEEECCCSSSSSCCCEE-EEEE--------ECCBCCCCCTTCCCCEEEEETSCEEE
T ss_pred             cCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeE-eccc--------ccCccccCCccccceEEEECCCCEEE
Confidence            3222   2345678889999999999999999887754331 1111        1112223321  03577889999999


Q ss_pred             EEeCCcceeeeeecCCCCCeEE-EEEcCCCCEE----EEEeCCccEEEEECCCC
Q 006909          426 ILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHI----ISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       426 iwd~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l----~s~s~dg~I~iwd~~~~  474 (626)
                      .||..+........ ...++.. ..++++|...    +.+  ++.++.+|..++
T Consensus       187 a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG  237 (369)
T 2hz6_A          187 TVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSG  237 (369)
T ss_dssp             EECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHH
T ss_pred             EEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeec--ccceeeeehhcC
Confidence            99987655544433 2334433 3445566432    122  345555665444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.72  E-value=1.3e-06  Score=96.57  Aligned_cols=223  Identities=13%  Similarity=0.067  Sum_probs=136.2

Q ss_pred             CCeEEEEe------CCCcEEEeccCCCeeeEeecCC--C------------------------------CeEEEEEeeCC
Q 006909          279 SNYLLSCS------MDKTVRMWQVGCNQCLNVFDHH--N------------------------------YVTCVQFNPID  320 (626)
Q Consensus       279 ~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~~--~------------------------------~v~~~~~~p~~  320 (626)
                      ++.++.++      .++.|..||..+|+.+..+...  .                              ....++++| +
T Consensus       167 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~  245 (689)
T 1yiq_A          167 NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-E  245 (689)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-T
T ss_pred             CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-C
Confidence            45555543      3689999999999988776411  0                              012577888 7


Q ss_pred             CCEEEEEeCCCc-------------------EEEEeCCCCeEEEecc---CC-------CCeEEEEEeeCCC---EEEEE
Q 006909          321 DNYFISGSIDGK-------------------VRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVG  368 (626)
Q Consensus       321 ~~~l~s~s~dg~-------------------v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g~---~l~~g  368 (626)
                      .+.++.++.++.                   |..+|..+++.+-...   +.       ..+.......+|+   .++.+
T Consensus       246 ~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~  325 (689)
T 1yiq_A          246 LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA  325 (689)
T ss_dssp             TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE
Confidence            888888887763                   9999999988763221   21       1222233344665   78899


Q ss_pred             ecCCcEEEEEcCCCceeeeEEeec----cc-----------------ccc-----------CCCCeEEEEEcCCCCcEEE
Q 006909          369 SITGTCHFYKASGNDLKLEKVDFH----DR-----------------KKT-----------SGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       369 ~~dg~i~i~d~~~~~~~~~~~~~~----~~-----------------~~~-----------~~~~i~~l~~s~~~~~~l~  416 (626)
                      +.+|.++++|..+++.........    ..                 ...           -...-..++++|+. .+++
T Consensus       326 ~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~y  404 (689)
T 1yiq_A          326 PKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVY  404 (689)
T ss_dssp             CTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEE
T ss_pred             CCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEE
Confidence            999999999999888753211000    00                 000           00112237888876 4555


Q ss_pred             EEeC---------------------------------------------CCcEEEEeCCcceeeeeecCCCCCeEEEEEc
Q 006909          417 ITSE---------------------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFT  451 (626)
Q Consensus       417 ~~s~---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  451 (626)
                      +...                                             +|.|..||..+.........+ .+.....++
T Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~  483 (689)
T 1yiq_A          405 IPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLS  483 (689)
T ss_dssp             EEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEE
T ss_pred             EeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccce
Confidence            5421                                             377999998876655554322 233334556


Q ss_pred             CCCCEEEEEeCCccEEEEECCCCCCCCCCcc--CCccceeeeccCCcEEEEecCC
Q 006909          452 TTGKHIISIGDDCRVYVWNYDELCFPSSKQK--NSVRSCEHFFSEGVSVAVQWPG  504 (626)
Q Consensus       452 p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~g~~~av~~s~  504 (626)
                      ..+.+++.++.|+.|+.||..++........  .....-+.+..+|....+..+.
T Consensus       484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          484 TAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             ECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence            6788999999999999999999855433322  1122234455677654433333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.70  E-value=5.1e-06  Score=79.20  Aligned_cols=198  Identities=7%  Similarity=0.003  Sum_probs=132.5

Q ss_pred             ceEEEEEcCCCeEEEEe-C--CCcEEEeccCCCeeeEeecCCC--CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909          270 DVLDLAWSNSNYLLSCS-M--DKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  344 (626)
Q Consensus       270 ~V~~l~~s~~~~l~s~s-~--d~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~  344 (626)
                      ....++|++++.|+.++ .  ++.|++.|+.+++.+..+....  ....+++.  .+...++.-.++.+.++|..+.+++
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            46899999988655543 2  5799999999999998875333  33345554  3344445556789999999998877


Q ss_pred             EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 006909          345 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL  424 (626)
Q Consensus       345 ~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i  424 (626)
                      ...... .-....++++|+.++++..++.|.++|..+.+.... +..... ...-..+..+.|. +| ..++....++.|
T Consensus       100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~-I~Vg~~-~~p~~~~nele~~-dg-~lyvn~~~~~~V  174 (266)
T 2iwa_A          100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK-HNVKYN-GHRVIRLNELEYI-NG-EVWANIWQTDCI  174 (266)
T ss_dssp             EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred             EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE-EEECCC-CcccccceeEEEE-CC-EEEEecCCCCeE
Confidence            655433 112344667898888888889999999988765433 222211 0111346788888 65 555555568999


Q ss_pred             EEEeCCcc--eeeeeec-----------CCCCCeEEEEEcCCCCEEE-EEeCCccEEEEECCCC
Q 006909          425 RILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHII-SIGDDCRVYVWNYDEL  474 (626)
Q Consensus       425 ~iwd~~~~--~~~~~~~-----------~~~~~v~~~~~sp~g~~l~-s~s~dg~I~iwd~~~~  474 (626)
                      .+.|..+.  ...+...           ......+.++|+|+++.++ ++...+.|++-++...
T Consensus       175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            99998743  3333321           1124568999999987655 5556788999888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.68  E-value=2.9e-06  Score=86.19  Aligned_cols=189  Identities=7%  Similarity=0.038  Sum_probs=124.3

Q ss_pred             CCC--eEEEEeCCCcEEEeccCCC----eeeEeec-------CC-CCeEEEEEeeCCCCEEEEEeCC------CcEEEEe
Q 006909          278 NSN--YLLSCSMDKTVRMWQVGCN----QCLNVFD-------HH-NYVTCVQFNPIDDNYFISGSID------GKVRIWG  337 (626)
Q Consensus       278 ~~~--~l~s~s~d~~v~iwd~~~~----~~~~~~~-------~~-~~v~~~~~~p~~~~~l~s~s~d------g~v~iwd  337 (626)
                      .++  .++++-.++.|.++|+.+.    +..+++.       .. .....+...| ++ +++++..+      |.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence            555  5667788899999999765    6666662       12 2455677888 88 77776655      7899999


Q ss_pred             CCCCeEEEeccCC----CCeEEEEEeeCCCEEEEEe-------------------cCCcEEEEEcCCCceeeeEEeeccc
Q 006909          338 VCEKRVVDWADVR----DVISAICYIPDGKGFIVGS-------------------ITGTCHFYKASGNDLKLEKVDFHDR  394 (626)
Q Consensus       338 ~~~~~~~~~~~~~----~~i~~i~~sp~g~~l~~g~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~  394 (626)
                      ..+.+++......    .....+.|+|+++.+++..                   .+.+|.+||+.+.+. ...+.... 
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~tI~vg~-  248 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHSLTLGE-  248 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEEEESCT-
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeEEecCC-
Confidence            9998877644322    2234578899999888874                   368999999987643 33333311 


Q ss_pred             cccCCCCeEEEEE--cCCCCcEEEEEe-----CCCcEEEEeCCcc----eeeeeecCC----------------CCCeEE
Q 006909          395 KKTSGNKITGIQF--SRDESQRIMITS-----EDSKLRILDGVDV----IHKFKGLPK----------------SGSQMS  447 (626)
Q Consensus       395 ~~~~~~~i~~l~~--s~~~~~~l~~~s-----~dg~i~iwd~~~~----~~~~~~~~~----------------~~~v~~  447 (626)
                         .+.....+.|  +|++...++++.     .+++|.+|.....    .+.+.....                ......
T Consensus       249 ---~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          249 ---ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             ---TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             ---CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence               0123455656  999854444445     6778877653211    111111000                245778


Q ss_pred             EEEcCCCCEEEEEeC-CccEEEEECCC
Q 006909          448 ASFTTTGKHIISIGD-DCRVYVWNYDE  473 (626)
Q Consensus       448 ~~~sp~g~~l~s~s~-dg~I~iwd~~~  473 (626)
                      +.+||||++|.++.. .+.|.+||+..
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            999999999988765 68999999964

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.64  E-value=5.5e-06  Score=84.42  Aligned_cols=181  Identities=7%  Similarity=0.024  Sum_probs=117.9

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeE------EEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCC
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV  352 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~------~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  352 (626)
                      ++.++.++.++.|..+|..+++.+..+.....+.      ....   .+..++.++.++.|..+|..+++..-......+
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~  219 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA  219 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence            5688888999999999999999888776443332      2222   245778888899999999998876543322111


Q ss_pred             --------eEEEEEee--CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909          353 --------ISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  422 (626)
Q Consensus       353 --------i~~i~~sp--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg  422 (626)
                              +..+...|  .+..+++++.++.+..+|..+++.....   ..      .....+... +  ..+++++.++
T Consensus       220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~---~~------~~~~~~~~~-~--~~l~~~~~~g  287 (376)
T 3q7m_A          220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR---EL------GSVNDFIVD-G--NRIYLVDQND  287 (376)
T ss_dssp             ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE---CC------CCEEEEEEE-T--TEEEEEETTC
T ss_pred             CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec---cC------CCCCCceEE-C--CEEEEEcCCC
Confidence                    00011111  3567888889999999999887754331   11      234444443 2  3788888899


Q ss_pred             cEEEEeCCcceeeeeecC-CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909          423 KLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       423 ~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      .|..+|..+......... ....+.....  .+..|+.++.+|.|+++|..++..
T Consensus       288 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          288 RVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             CEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             eEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence            999999876655544421 1122222222  357888899999999999988743

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.63  E-value=3.9e-05  Score=75.66  Aligned_cols=225  Identities=12%  Similarity=0.069  Sum_probs=137.0

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      .....++|+++|+++++-..++.|..||.....                                               
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-----------------------------------------------   64 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-----------------------------------------------   64 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-----------------------------------------------
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-----------------------------------------------
Confidence            457789999999977777678888888865410                                               


Q ss_pred             eeeccCccceEEEEEcCCCeEEEEeC--CC-cEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          262 QELHGHKGDVLDLAWSNSNYLLSCSM--DK-TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~~l~s~s~--d~-~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      .........+..+++.+++.|+.+..  ++ .|..+|..+++......  .......++..+ ++..+++-..++.|..+
T Consensus        65 ~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~  143 (306)
T 2p4o_A           65 QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLI  143 (306)
T ss_dssp             EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEE
Confidence            00111123578899999885555442  22 46667777776544332  223345555554 44445554458899999


Q ss_pred             eCCCCe--EEEec---------cCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCC-CceeeeEEeeccccccCCCCeE
Q 006909          337 GVCEKR--VVDWA---------DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       337 d~~~~~--~~~~~---------~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                      |..++.  +....         ..-...+.+  +|+++.|+++. ..+.|..|++.. +..........      .....
T Consensus       144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------~~~P~  215 (306)
T 2p4o_A          144 DVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------QTNID  215 (306)
T ss_dssp             ETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------SCCCS
T ss_pred             eCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------cCCCC
Confidence            987642  22111         111234555  88888776655 467899999875 22211111111      13456


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeee-eecCCCCCeEEEEEc---CCCCEEEEEeCC
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFT---TTGKHIISIGDD  463 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s---p~g~~l~s~s~d  463 (626)
                      .+++.++| +++++....+.|.++|........ ........+.+++|.   |+++.|+.++..
T Consensus       216 gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          216 DFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             SEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            78999998 676666778899999965322222 122223568899998   888877776654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.63  E-value=8.9e-07  Score=97.79  Aligned_cols=193  Identities=12%  Similarity=0.127  Sum_probs=121.0

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCC-----------e-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-----------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  346 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~  346 (626)
                      ++.++.++.++.|..+|..+|+.+..+.....           + ..+.+   .+..+++++.|+.|..+|..+++.+-.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~v~v~~~dg~l~AlDa~TG~~~W~  146 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV---WKGKVYVGVLDGRLEAIDAKTGQRAWS  146 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE---ECCEEEEEccCCEEEEEECCCCCEeee
Confidence            56888888899999999999999988753221           1 12233   456788899999999999999887632


Q ss_pred             ccCC------CCeEEEEEeeCCCEEEEEe------cCCcEEEEEcCCCceeeeEEeeccccc------------------
Q 006909          347 ADVR------DVISAICYIPDGKGFIVGS------ITGTCHFYKASGNDLKLEKVDFHDRKK------------------  396 (626)
Q Consensus       347 ~~~~------~~i~~i~~sp~g~~l~~g~------~dg~i~i~d~~~~~~~~~~~~~~~~~~------------------  396 (626)
                      ....      ..+.+.-.-.++ .+++++      .+|.|+.||..+++.............                  
T Consensus       147 ~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  225 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD  225 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred             ecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence            2221      111110011244 455554      368999999999887544221110000                  


Q ss_pred             ------cCCCCeEEEEEcCCCCcEEEEEeCCCc-------------------EEEEeCCcceeeeee--cCCC-------
Q 006909          397 ------TSGNKITGIQFSRDESQRIMITSEDSK-------------------LRILDGVDVIHKFKG--LPKS-------  442 (626)
Q Consensus       397 ------~~~~~i~~l~~s~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~--~~~~-------  442 (626)
                            ........+++.|++ .++++++.++.                   |..+|..+.......  ..|.       
T Consensus       226 ~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~  304 (689)
T 1yiq_A          226 AYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT  304 (689)
T ss_dssp             THHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred             eeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence                  011122357888876 57888877753                   999998765554433  2121       


Q ss_pred             CCeEEEEEcCCCC---EEEEEeCCccEEEEECCCCCC
Q 006909          443 GSQMSASFTTTGK---HIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       443 ~~v~~~~~sp~g~---~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      ..+.......+|+   .|+.++.+|.++++|..++..
T Consensus       305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence            1222223334665   788999999999999998854

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.62  E-value=8.2e-07  Score=93.37  Aligned_cols=198  Identities=11%  Similarity=0.043  Sum_probs=131.3

Q ss_pred             ceEEEEE-c-CCC-eEEEEe------------------CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909          270 DVLDLAW-S-NSN-YLLSCS------------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       270 ~V~~l~~-s-~~~-~l~s~s------------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                      .+..+++ + |++ ++++++                  .++.+.+.|..+.+....+.-......++++| +++++++.+
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~  213 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTS  213 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEe
Confidence            4567776 3 665 666553                  34679999999998888876444567788999 899888887


Q ss_pred             CCC--------------------------------------cEEEEeCCC--CeE-EEeccCCCCeEEEEEeeCCCEEEE
Q 006909          329 IDG--------------------------------------KVRIWGVCE--KRV-VDWADVRDVISAICYIPDGKGFIV  367 (626)
Q Consensus       329 ~dg--------------------------------------~v~iwd~~~--~~~-~~~~~~~~~i~~i~~sp~g~~l~~  367 (626)
                      .+.                                      .|.+.|.++  +.. ...........++.++|||+++++
T Consensus       214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V  293 (595)
T 1fwx_A          214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV  293 (595)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred             cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence            553                                      467777776  333 344444556778999999998887


Q ss_pred             Ee-cCCcEEEEEcCCCcee------ee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-------
Q 006909          368 GS-ITGTCHFYKASGNDLK------LE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-------  432 (626)
Q Consensus       368 g~-~dg~i~i~d~~~~~~~------~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-------  432 (626)
                      ++ .+.+|.++|+.+.+..      .. ....   ....+.....++|+|+| ...++...|++|.+||+...       
T Consensus       294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~---~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~  369 (595)
T 1fwx_A          294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVA---EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE  369 (595)
T ss_dssp             ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE---CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC
T ss_pred             eCCCCCeEEEEECcccccccccccCcccceEE---EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc
Confidence            66 5789999999854210      00 0000   11123578899999998 77778888999999996541       


Q ss_pred             -----eeeeeecCCCCCe-----EEEEEcCCCCEEEEEeC---Ccc----------EEEEECCCC
Q 006909          433 -----IHKFKGLPKSGSQ-----MSASFTTTGKHIISIGD---DCR----------VYVWNYDEL  474 (626)
Q Consensus       433 -----~~~~~~~~~~~~v-----~~~~~sp~g~~l~s~s~---dg~----------I~iwd~~~~  474 (626)
                           +..+..  |-.+-     .++.++|||++|++...   |+-          -.++|+.++
T Consensus       370 ~~~~vi~kidV--~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          370 KVDPIKDKLDV--HYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             SCCCEEEEEEC--SSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred             ccceeEEEeec--ccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence                 222222  22111     12245799999999763   332          177888654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.60  E-value=6.4e-07  Score=89.35  Aligned_cols=183  Identities=14%  Similarity=0.066  Sum_probs=115.2

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCC-eEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE-Ee
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DW  346 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~-~~  346 (626)
                      ..+.++...+++.|..++.+  |..+|. +++.+..+..... .....+.   +..+..++.++.|..+|.. ++.. ..
T Consensus        60 ~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~  132 (330)
T 3hxj_A           60 IIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRF  132 (330)
T ss_dssp             EEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred             CcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence            44566777777877777665  888886 5655544432222 2223332   4567778888999999988 5443 33


Q ss_pred             ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909          347 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  426 (626)
Q Consensus       347 ~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i  426 (626)
                      ......+.++...+++. +++++.++.+..||.. +..... ....      ...+.++...+++  .+.+++  +.|..
T Consensus       133 ~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~-~~~~------~~~~~~~~~d~~g--~l~v~t--~~l~~  199 (330)
T 3hxj_A          133 KTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR-FKTN------DAITSAASIGKDG--TIYFGS--DKVYA  199 (330)
T ss_dssp             ECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE-EECS------SCCCSCCEECTTC--CEEEES--SSEEE
T ss_pred             cCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE-EecC------CCceeeeEEcCCC--EEEEEe--CEEEE
Confidence            33444566667776775 7778888999999988 443222 2221      2456667777776  355555  88999


Q ss_pred             EeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       427 wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      +| .+.............+.++...++|.. ..++.++.|+.++...
T Consensus       200 ~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~g  244 (330)
T 3hxj_A          200 IN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINPDG  244 (330)
T ss_dssp             EC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECTTS
T ss_pred             EC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECCCC
Confidence            99 544444444334456778888888765 4456677888887543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.58  E-value=9.6e-05  Score=83.32  Aligned_cols=239  Identities=10%  Similarity=0.155  Sum_probs=156.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909          184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  263 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (626)
                      |.++...++|.+.+ |+.++-|..|+..+.....                                           .. 
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~-------------------------------------------~~-  209 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEK-------------------------------------------VI-  209 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEE-------------------------------------------CC-
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEE-------------------------------------------ec-
Confidence            88898888886555 5555458888876532110                                           00 


Q ss_pred             eccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec--------CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      ...+...|.++...+++.|..++.++-|.+||..+++......        ....|.++...+ ++.+.+ |+.+ -|.+
T Consensus       210 ~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~  286 (795)
T 4a2l_A          210 PILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLWI-GTFN-DLNI  286 (795)
T ss_dssp             ----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEEE-EESS-CEEE
T ss_pred             CCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEEE-EeCC-hhhe
Confidence            0012456888888888877777766569999988776543321        135699998887 666555 4445 5889


Q ss_pred             EeCCCCeEEEecc--------CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909          336 WGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       336 wd~~~~~~~~~~~--------~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  407 (626)
                      ||..++.......        ....|.++...++|. |.+|+.++-|..|+........... ...........|.++..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~l~~~~V~~i~~  364 (795)
T 4a2l_A          287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRN-IPYKNSLSDNVVSCIVE  364 (795)
T ss_dssp             EETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECC-CTTSSSCSCSSEEEEEE
T ss_pred             EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcC-CCCCCCCCCCeeEEEEE
Confidence            9988877665432        235699999988885 6778888889999876544321110 00011112467999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeec-------CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          408 SRDESQRIMITSEDSKLRILDGVDV-IHKFKGL-------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~-------~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .++|  .|-+|+.++-|..|+..+. ...+...       .....|.++...++|+.|..|+.++-|.+||..++
T Consensus       365 d~~g--~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          365 DKDK--NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             CTTS--CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             CCCC--CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            8886  4667888888999997643 2222211       12357889998889985666777777999998875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.57  E-value=6.6e-09  Score=105.97  Aligned_cols=182  Identities=8%  Similarity=0.024  Sum_probs=100.5

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCC-CCeE-E
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVR-DVIS-A  355 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~-~~i~-~  355 (626)
                      ++.+++++.|+.|+.||..+|+.+..+.. ..+.+..+.+ ++..+++++.||.|+.||..+++.+. +..+. ..+. +
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            56899999999999999999999988876 5555555555 67778888899999999998776532 22110 0010 0


Q ss_pred             EEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee
Q 006909          356 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK  435 (626)
Q Consensus       356 i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~  435 (626)
                      ..+. .+..+++++.++.++.||..+++.... ....       .   ...++|++ ..+++++.++.|+.||..+....
T Consensus        87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~-~~~~-------~---~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT-LSSA-------F---ADSLSPST-SLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE-ecCC-------C---cccccccC-CEEEEEecCCEEEEEECCCCCEE
Confidence            1111 345678888999999999998876432 1111       1   13345665 68888999999999997654332


Q ss_pred             eeecCCCCCeEEEEEcCCC---CEEEEEeCCccEEEEECCCCCCC
Q 006909          436 FKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNYDELCFP  477 (626)
Q Consensus       436 ~~~~~~~~~v~~~~~sp~g---~~l~s~s~dg~I~iwd~~~~~~~  477 (626)
                      ......  ......++++.   ..+++++.||.|+.||..++...
T Consensus       154 W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          154 WNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             CEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             EeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            221100  01122233332   56777888999999999887443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.54  E-value=1.6e-05  Score=74.80  Aligned_cols=184  Identities=11%  Similarity=0.000  Sum_probs=122.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909          184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  263 (626)
Q Consensus       184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (626)
                      ...+.|+ ++.+..+.+.+|.|+++|+.+++..                                             ..
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~---------------------------------------------~~   90 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV---------------------------------------------WM   90 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS---------------------------------------------EE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE---------------------------------------------eE
Confidence            4678887 4667778888899999999986442                                             22


Q ss_pred             eccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909          264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  343 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~  343 (626)
                      +......--.+++..+...++.-.++.+.+||..+.+.+.++.....-..++  + ++..|+.+..++.|.++|..+.++
T Consensus        91 ~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v  167 (268)
T 3nok_A           91 ERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFAL  167 (268)
T ss_dssp             EECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--E-ETTEEEEECSSSEEEEECTTTCCE
T ss_pred             ECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--c-CCCEEEEECCCCEEEEEcCCCCeE
Confidence            1111111123555555555566678999999999999999997554444555  4 677777777788999999998876


Q ss_pred             EEeccCC------CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc-------cccCCCCeEEEEEcCC
Q 006909          344 VDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------KKTSGNKITGIQFSRD  410 (626)
Q Consensus       344 ~~~~~~~------~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~i~~l~~s~~  410 (626)
                      .......      ..++.+.|. +|+..+..-.++.|.+.|..+++... .+.+.+-       ........++|+++|+
T Consensus       168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~-~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG-VIDASALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE-EEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE-EEECCCCcccccccccCcCCceEEEEEcCC
Confidence            6533221      245667776 77555444468899999998887543 3333311       1122356789999998


Q ss_pred             CCcEEEEE
Q 006909          411 ESQRIMIT  418 (626)
Q Consensus       411 ~~~~l~~~  418 (626)
                      +..++++|
T Consensus       246 ~~rlfVTG  253 (268)
T 3nok_A          246 SGRIFMTG  253 (268)
T ss_dssp             TCCEEEEE
T ss_pred             CCEEEEeC
Confidence            76556555

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.53  E-value=4e-06  Score=92.32  Aligned_cols=153  Identities=9%  Similarity=-0.005  Sum_probs=97.1

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCC------CCeEEEEEeeCCCCEEEEEeC------CCcEEEEeCCCCeEEEe
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH------NYVTCVQFNPIDDNYFISGSI------DGKVRIWGVCEKRVVDW  346 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~------~~v~~~~~~p~~~~~l~s~s~------dg~v~iwd~~~~~~~~~  346 (626)
                      ++.++.++.|+.|..+|..+|+.+..+...      ..+.+.-..  .+..++.++.      ++.|+.+|..+++++-.
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            468888899999999999999998887633      122221111  2345555543      68999999999886632


Q ss_pred             ccC-C--------------------------------CCeEEEEEeeCCCEEEEEecCC-------------------cE
Q 006909          347 ADV-R--------------------------------DVISAICYIPDGKGFIVGSITG-------------------TC  374 (626)
Q Consensus       347 ~~~-~--------------------------------~~i~~i~~sp~g~~l~~g~~dg-------------------~i  374 (626)
                      ... .                                .....++++|++..+++++.++                   .|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            211 0                                1113578899999999888764                   49


Q ss_pred             EEEEcCCCceeeeEEeeccccc---cCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEeCCccee
Q 006909          375 HFYKASGNDLKLEKVDFHDRKK---TSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDVIH  434 (626)
Q Consensus       375 ~i~d~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~s~~~~--~~l~~~s~dg~i~iwd~~~~~~  434 (626)
                      ..+|..+++..... ....+..   .......-+....+|.  ..++.++.+|.|+++|..+...
T Consensus       286 ~AlD~~TG~~~W~~-~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~  349 (677)
T 1kb0_A          286 VALDPDTGKYKWHY-QETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF  349 (677)
T ss_dssp             EEECTTTCCEEEEE-ESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             EEEECCCCCEEEEE-ecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            99999988765432 1111100   0011222233334552  4788899999999999765443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.53  E-value=6.7e-06  Score=81.81  Aligned_cols=185  Identities=14%  Similarity=0.053  Sum_probs=119.6

Q ss_pred             ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe-EEEec
Q 006909          270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWA  347 (626)
Q Consensus       270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~  347 (626)
                      .+.++...+++.++.++.++.|..+|.. ++....+. ....+.++...+ ++.+++ ++  +.|..+| .+++ .....
T Consensus       138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~  211 (330)
T 3hxj_A          138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFY  211 (330)
T ss_dssp             CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEEC
T ss_pred             eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEc
Confidence            4455566667888888888999999998 77766664 334566677765 666444 44  7899999 5544 44444


Q ss_pred             cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909          348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  427 (626)
Q Consensus       348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw  427 (626)
                      .....+.++...++| .+.+++.++.+..++..+...  .......      ..+..+...+++  .|.+++.++.|..+
T Consensus       212 ~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~g~~~--~~~~~~~------~~~~~~~~~~~g--~l~v~t~~ggl~~~  280 (330)
T 3hxj_A          212 AGYWTVTRPAISEDG-TIYVTSLDGHLYAINPDGTEK--WRFKTGK------RIESSPVIGNTD--TIYFGSYDGHLYAI  280 (330)
T ss_dssp             CSSCCCSCCEECTTS-CEEEEETTTEEEEECTTSCEE--EEEECSS------CCCSCCEECTTS--CEEEECTTCEEEEE
T ss_pred             cCCcceeceEECCCC-eEEEEcCCCeEEEECCCCCEe--EEeeCCC------CccccceEcCCC--eEEEecCCCCEEEE
Confidence            445667888888877 566677788888887543322  2222111      223345566565  67888889899999


Q ss_pred             eCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          428 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       428 d~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      |.. .............+.++...++|+ |..++.+|.+++...+.
T Consensus       281 d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          281 NPD-GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             CTT-SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             CCC-CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence            953 222222222345566777777776 55578899999988764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.51  E-value=2e-05  Score=74.16  Aligned_cols=186  Identities=8%  Similarity=0.046  Sum_probs=122.7

Q ss_pred             cceEEEEEcCCC-eEEEEeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCCCcEEEEeCCCCeEE
Q 006909          269 GDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVCEKRVV  344 (626)
Q Consensus       269 ~~V~~l~~s~~~-~l~s~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~v~iwd~~~~~~~  344 (626)
                      .....+.|+ ++ ++.+.+.+|  .|+++|+.+++.+..+..........+.+ .++.|..+ -.++.+.+||..+.+++
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~-~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD-WKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE-ETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE-eCCEEEEEEeeCCEEEEEECccCcEE
Confidence            345788998 56 555666665  89999999999999887555554433344 34454444 45789999999998887


Q ss_pred             EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 006909          345 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL  424 (626)
Q Consensus       345 ~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i  424 (626)
                      ........  ...++++++.|+.+..++.|.++|..+.+.... +..... ...-..++.+.|. +| ..++..-.++.|
T Consensus       121 ~ti~~~~e--G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~-I~V~~~-g~~~~~lNELe~~-~G-~lyan~w~~~~I  194 (262)
T 3nol_A          121 RSFNYDGE--GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT-ITVTAH-GEELPELNELEWV-DG-EIFANVWQTNKI  194 (262)
T ss_dssp             EEEECSSC--CCCEEECSSCEEECCSSSEEEEECTTTCSEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred             EEEECCCC--ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE-EEeccC-CccccccceeEEE-CC-EEEEEEccCCeE
Confidence            65554432  234447888888887788999999988775433 222110 0011345567776 55 555555578899


Q ss_pred             EEEeCCcc--eeeeeec----------CCCCCeEEEEEcCCCCEEEEEeC
Q 006909          425 RILDGVDV--IHKFKGL----------PKSGSQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       425 ~iwd~~~~--~~~~~~~----------~~~~~v~~~~~sp~g~~l~s~s~  462 (626)
                      .+.|..+.  ...+...          ......+.++|+|+++.|+..+.
T Consensus       195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            99997643  3333321          11245689999999888877765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.49  E-value=0.00032  Score=79.00  Aligned_cols=244  Identities=13%  Similarity=0.136  Sum_probs=158.7

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      ...|.++...++|.+.+ |+.+| |.+|+..+........                                      .+
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~--------------------------------------~~  301 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSS--------------------------------------NP  301 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECC--------------------------------------CT
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEec--------------------------------------CC
Confidence            35699999998887554 44455 8888876532211000                                      00


Q ss_pred             ceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-------CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          261 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                      .....-....|.++...++|.|..|+.++-|..|+..++.......       ....|.++...+ ++++ -.|+.++-|
T Consensus       302 ~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~l-WiGt~~~Gl  379 (795)
T 4a2l_A          302 VENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKNL-WIGTNDGGL  379 (795)
T ss_dssp             TSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSCE-EEEESSSCE
T ss_pred             CCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCCE-EEEECCCCe
Confidence            0000112457999999998988899988889999887654332211       245699998877 6654 457777779


Q ss_pred             EEEeCCCCeEEEecc---------CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909          334 RIWGVCEKRVVDWAD---------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       334 ~iwd~~~~~~~~~~~---------~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      ..||..++.......         ....|.++...++|+.|.+|+.++.+..||..++....  ..... .......|.+
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~--~~~~~-~~l~~~~v~~  456 (795)
T 4a2l_A          380 NLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN--FNQRN-SQLVNENVYA  456 (795)
T ss_dssp             EEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE--ECTTT-SCCSCSCEEE
T ss_pred             EEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE--eecCC-CCcCCCeeEE
Confidence            999998877655431         23568899988888768888888889999988765422  11100 1123467999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEeCCcceee-eee-----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          405 IQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~-----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +...++| . |.+|+. +-+.+||..+.... +..     ......|.++...++|++.+...  +-|+.|+..+.
T Consensus       457 i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~  527 (795)
T 4a2l_A          457 ILPDGEG-N-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL  527 (795)
T ss_dssp             EEECSSS-C-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT
T ss_pred             EEECCCC-C-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC
Confidence            9988886 3 444455 45888986643222 211     11235788999999998776554  56888988765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.48  E-value=4.3e-05  Score=71.92  Aligned_cols=187  Identities=9%  Similarity=0.011  Sum_probs=124.4

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  348 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  348 (626)
                      .....+.|+.+.++.+.+.+|.|+++|+.+++.+..+ ...........+..+.+++..-.++.+.+||..+.+++....
T Consensus        55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            3457888886447778888899999999999998887 555444432333134555555568899999999988877555


Q ss_pred             CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909          349 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  428 (626)
Q Consensus       349 ~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd  428 (626)
                      ....-..+  .++++.|+++..++.|.++|..+.+.... +..... ...-..++.+.|. +| ..++..-.++.|.+.|
T Consensus       134 ~~~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-I~V~~~-g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vID  207 (268)
T 3nok_A          134 YSGEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGA-VQVKLR-GQPVELINELECA-NG-VIYANIWHSSDVLEID  207 (268)
T ss_dssp             CSSCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTCSEEEEEC
T ss_pred             CCCceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEE-EEeCCC-CcccccccccEEe-CC-EEEEEECCCCeEEEEe
Confidence            44333333  47788999888899999999988765433 322211 1111345677777 55 5555555788999999


Q ss_pred             CCcc--eeeeeec-----------CCCCCeEEEEEcCCCCEEEEEeC
Q 006909          429 GVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       429 ~~~~--~~~~~~~-----------~~~~~v~~~~~sp~g~~l~s~s~  462 (626)
                      ..+.  ...+...           ......+.++++|+++.|+..+.
T Consensus       208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            7643  3333321           12346789999998766665553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.47  E-value=2.4e-05  Score=73.63  Aligned_cols=195  Identities=13%  Similarity=0.112  Sum_probs=123.2

Q ss_pred             cccccccccCc--EEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          173 TSQEIQAHKGC--IWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       173 ~~~~l~~H~~~--V~~l~fspdg~~Latgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      ..+++ .|...  ...+.|+ ++.++.+.+.+|  .|+++|+.+++....                              
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~------------------------------   80 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ------------------------------   80 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE------------------------------
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE------------------------------
Confidence            34444 45443  3778898 677777777766  899999998654321                              


Q ss_pred             cCCccccccCCCceeeccCc-cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909          249 IPDEVFQIEESPLQELHGHK-GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                                     +.-.. ..--.++...+...++.-.++.+.++|..+.+.+.++.....-..++  + ++..|+..
T Consensus        81 ---------------~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L~~S  142 (262)
T 3nol_A           81 ---------------IELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYLIMS  142 (262)
T ss_dssp             ---------------EECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCEEEC
T ss_pred             ---------------EecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEEEEE
Confidence                           11111 11123444443344455568899999999999999997554334444  4 66666666


Q ss_pred             eCCCcEEEEeCCCCeEEEeccC---C---CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc------
Q 006909          328 SIDGKVRIWGVCEKRVVDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK------  395 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~~~~~---~---~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~------  395 (626)
                      ..++.|.++|..+.++......   .   ..++.+.|. +|+..+..-.++.|.+.|..+++... .+.+.+-.      
T Consensus       143 dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~-~Id~~~L~~~~~~~  220 (262)
T 3nol_A          143 DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG-IIDLNGILAEAGPL  220 (262)
T ss_dssp             CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE-EEECTTGGGGSCSC
T ss_pred             CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE-EEECCcCccccccc
Confidence            5578899999998776654322   1   335567775 77655555568899999998887643 34433211      


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909          396 KTSGNKITGIQFSRDESQRIMITSE  420 (626)
Q Consensus       396 ~~~~~~i~~l~~s~~~~~~l~~~s~  420 (626)
                      .......++|+|+|++. .|++++.
T Consensus       221 ~~~~~vlNGIA~dp~~~-~lfVTGK  244 (262)
T 3nol_A          221 PSPIDVLNGIAWDKEHH-RLFVTGK  244 (262)
T ss_dssp             CSSCCCEEEEEEETTTT-EEEEEET
T ss_pred             cCcCCceEEEEEcCCCC-EEEEECC
Confidence            11235678999999975 4444443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.47  E-value=0.00024  Score=68.33  Aligned_cols=218  Identities=7%  Similarity=-0.069  Sum_probs=132.2

Q ss_pred             CcEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          182 GCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latg-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      ..+..++|+|+++.|..+ ..++.|.+++......                                             
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---------------------------------------------   70 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------------------------------------------   70 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------------------------------------------
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---------------------------------------------
Confidence            357899999976655544 4567899998865211                                             


Q ss_pred             ceeeccCccceEEEEEcCC-CeEE-EEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC---CCcEE
Q 006909          261 LQELHGHKGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---DGKVR  334 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~---dg~v~  334 (626)
                      .............+++.++ +.|+ +-...+.|.++++.......... .......++++| ++..|+.+..   .+.|.
T Consensus        71 ~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~  149 (267)
T 1npe_A           71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIE  149 (267)
T ss_dssp             EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEE
T ss_pred             EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEE
Confidence            0111112245788999985 5544 44556789999987543322222 224678999999 6666555553   36888


Q ss_pred             EEeCCCCeEEEec-cCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          335 IWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       335 iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      .+++.......+. ..-.....++++|++..|+++. ..+.|..++..+..... ..  ..     ......++..  +.
T Consensus       150 ~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~-~~--~~-----~~~P~gi~~d--~~  219 (267)
T 1npe_A          150 TSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK-VL--EG-----LQYPFAVTSY--GK  219 (267)
T ss_dssp             EEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE-EE--EC-----CCSEEEEEEE--TT
T ss_pred             EEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE-Ee--cC-----CCCceEEEEe--CC
Confidence            8887654332222 2234678999999877766655 45789999987543211 11  11     1344667664  33


Q ss_pred             cEEEEEeCCCcEEEEeCCcceeeeeecCC-CCCeEEEEEcCCCC
Q 006909          413 QRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGK  455 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~g~  455 (626)
                      .++++....+.|.++|..+....-..... ......+++.|++.
T Consensus       220 ~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          220 NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            45555556789999997654333222212 22467788888764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.44  E-value=0.0001  Score=68.80  Aligned_cols=191  Identities=7%  Similarity=-0.018  Sum_probs=124.9

Q ss_pred             cCc--cceEEEEEcCCCeEEEEeCC--CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          266 GHK--GDVLDLAWSNSNYLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       266 ~h~--~~V~~l~~s~~~~l~s~s~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                      .|.  .....+.|+++.++.+.+.+  ..|+.+|+.+++.+...............+.++..++..-.++.+.+||..+.
T Consensus        16 phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl   95 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL   95 (243)
T ss_dssp             ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred             CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcC
Confidence            454  45679999874455566665  48999999999999988755554444344413444455556889999999998


Q ss_pred             eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          342 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       342 ~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                      +++........-..  +.++++.|+++..++.|.++|..+.+.... +..... ...-..++.+.+. +| ..++..-.+
T Consensus        96 ~~~~ti~~~~~Gwg--lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~-I~V~~~-g~~~~~lNeLe~~-~G-~lyanvw~s  169 (243)
T 3mbr_X           96 TPRARFRYPGEGWA--LTSDDSHLYMSDGTAVIRKLDPDTLQQVGS-IKVTAG-GRPLDNLNELEWV-NG-ELLANVWLT  169 (243)
T ss_dssp             EEEEEEECSSCCCE--EEECSSCEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTT
T ss_pred             cEEEEEeCCCCceE--EeeCCCEEEEECCCCeEEEEeCCCCeEEEE-EEEccC-CcccccceeeEEe-CC-EEEEEECCC
Confidence            88776555443334  447788888888899999999988765433 222211 0011345667766 44 555555568


Q ss_pred             CcEEEEeCCcc--eeeeeec-----------CCCCCeEEEEEcCCCCEEEEEeC
Q 006909          422 SKLRILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       422 g~i~iwd~~~~--~~~~~~~-----------~~~~~v~~~~~sp~g~~l~s~s~  462 (626)
                      ..|.+.|..+.  ...+...           ......+.++++|+++.|+..+.
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            89999997643  3333321           12245689999998877776664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.43  E-value=2.5e-05  Score=85.94  Aligned_cols=235  Identities=10%  Similarity=0.092  Sum_probs=124.2

Q ss_pred             ceEEEEEcCCC-eEEEEe-CCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEe-CC-----CcEEEEeCC
Q 006909          270 DVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS-ID-----GKVRIWGVC  339 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s-~d-----g~v~iwd~~  339 (626)
                      ...++++..++ .++.|+ .+..+.+||..+++....-.  ....-.+++..+ ++++++.|+ .+     ..+.+||..
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence            33456666766 666666 45689999998776544322  222223455556 889999988 34     569999998


Q ss_pred             CCeEEEecc-----CCCCeEEEEEeeCCCEEEEEecCC---------cEEEEEcCCCceeeeEEeecccc---ccCCCCe
Q 006909          340 EKRVVDWAD-----VRDVISAICYIPDGKGFIVGSITG---------TCHFYKASGNDLKLEKVDFHDRK---KTSGNKI  402 (626)
Q Consensus       340 ~~~~~~~~~-----~~~~i~~i~~sp~g~~l~~g~~dg---------~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~i  402 (626)
                      +.+-.....     ....-....+..+++.++.|+.+|         .+..||..+...... .......   ......-
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~-~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS-AGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE-EEECEETTEECCCCBTC
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec-CCccccccccCCCCCCC
Confidence            876444311     100000011224555566665554         467888876653221 1111000   0001123


Q ss_pred             EEEEEcCCCCcEEEEEeCCC-----------cEEEEeCCcceee-ee--ecCCCCCeEEEEEcCCCCEEEEEeCC-----
Q 006909          403 TGIQFSRDESQRIMITSEDS-----------KLRILDGVDVIHK-FK--GLPKSGSQMSASFTTTGKHIISIGDD-----  463 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg-----------~i~iwd~~~~~~~-~~--~~~~~~~v~~~~~sp~g~~l~s~s~d-----  463 (626)
                      .++.|...+.++++.|+.++           .|.+||..+..-. ..  .......-.+++..|+++.++.|+.+     
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            44455443336777777432           6778886543222 21  11111222345667899999999854     


Q ss_pred             ------ccEEEEECCCCCC---CCCCccCCccceeeeccCCcEEEEecCCCC
Q 006909          464 ------CRVYVWNYDELCF---PSSKQKNSVRSCEHFFSEGVSVAVQWPGIG  506 (626)
Q Consensus       464 ------g~I~iwd~~~~~~---~~~~~~~~~~~~~~~~~~g~~~av~~s~~~  506 (626)
                            ..+.+||..+..-   ........-.++..+.++|.++++.-.+.+
T Consensus       482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~  533 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG  533 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred             CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence                  4689999876521   111111111223344567777666654433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.40  E-value=0.00022  Score=67.40  Aligned_cols=207  Identities=12%  Similarity=0.209  Sum_probs=135.8

Q ss_pred             eeccCccceEEEEEcCCC-e-EEEEeCCCcEEEeccCCCeeeEeecC--CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          263 ELHGHKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~-~-l~s~s~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                      .+.+-...+..++|.|++ . +++...++.|...|.. ++.++.+..  ......|++.+ ++.++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence            455666789999999864 4 4457778889999998 888877743  35788899987 7776666556778999887


Q ss_pred             CCCe---EEEec-------cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC--ceeeeEEeecc-ccccCCCCeEEE
Q 006909          339 CEKR---VVDWA-------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN--DLKLEKVDFHD-RKKTSGNKITGI  405 (626)
Q Consensus       339 ~~~~---~~~~~-------~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~~~-~~~~~~~~i~~l  405 (626)
                      ....   .....       ........++|+|.++.|+++.......+|.+.+.  ........... .....-..+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            5433   11111       22345689999999988888887766677766521  00111111000 001122467899


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecCC-------CCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~-------~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      ++.|....+++.......+.++|.... +..+.....       -...-.++|.++|+. +..++.+.++++.-.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC-
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEec
Confidence            999987677777888889999996633 333333211       135689999999984 445777777777543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.36  E-value=0.00019  Score=70.62  Aligned_cols=198  Identities=11%  Similarity=-0.039  Sum_probs=122.1

Q ss_pred             cceEEEEEcCCCeEE-EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCeEEE
Q 006909          269 GDVLDLAWSNSNYLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVD  345 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg--~v~iwd~~~~~~~~  345 (626)
                      .....++|++++.|+ +-..++.|..||.... ....+.....+..+++.+ +++++++.....  .|..+|..++++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            567889999988554 4447789999998753 444445556789999999 888666554322  47777877777654


Q ss_pred             eccC--CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc---ccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909          346 WADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKKTSGNKITGIQFSRDESQRIMITSE  420 (626)
Q Consensus       346 ~~~~--~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~s~~~~~~l~~~s~  420 (626)
                      +...  ......++..+++..+++-..++.|.++|..+............   ...........+  ++++..++++-..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            3322  22334555555554444444588899998765422111000000   000111244556  7887555666667


Q ss_pred             CCcEEEEeCCc-c----eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          421 DSKLRILDGVD-V----IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       421 dg~i~iwd~~~-~----~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      .+.|..++... .    ...+..   ......++++++|++.++....+.|.+++...
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G  242 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  242 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             CCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence            78999999652 1    112211   13456789999999877777788999998753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=0.00074  Score=75.88  Aligned_cols=199  Identities=9%  Similarity=0.051  Sum_probs=126.0

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec--------CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  340 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~  340 (626)
                      ..|.++...+++.|..++.+ -+.+||..+++......        ....|.++...+ ++. |..|+..+-|.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DNK-LWIATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECT-TSE-EEEEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CCC-EEEEeCCCCeEEECCCC
Confidence            56888888888877777766 58899987765443221        235688988876 554 55566645688899887


Q ss_pred             CeEEEecc---------------CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeec--cccccCCCCeE
Q 006909          341 KRVVDWAD---------------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH--DRKKTSGNKIT  403 (626)
Q Consensus       341 ~~~~~~~~---------------~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~i~  403 (626)
                      +.......               ....|.++...++|. |.+|+.++-|..|+..............  .........|.
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  366 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS  366 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence            66443221               235688999888885 7778888889999877654322111000  01112236799


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcceee-eee--cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~--~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++...++|  .|.+|+.++-|..||..+.... +..  ......|.++...++|.+.+ |+.++-|..++..++
T Consensus       367 ~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~  437 (781)
T 3v9f_A          367 SVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK  437 (781)
T ss_dssp             EEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC
T ss_pred             EEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC
Confidence            99988886  4666776777889987643221 110  11345688888888887655 666677999988765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.34  E-value=0.00018  Score=67.12  Aligned_cols=190  Identities=12%  Similarity=0.085  Sum_probs=120.4

Q ss_pred             cccC--cEEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          179 AHKG--CIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       179 ~H~~--~V~~l~fspdg~~Latgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      .|..  -...+.|++ +.+..+.+.+|  .|+++|+.+++.....                                   
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-----------------------------------   59 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-----------------------------------   59 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-----------------------------------
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-----------------------------------
Confidence            4543  456889986 56666666654  8999999986543211                                   


Q ss_pred             cccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          255 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                              .+..+ ..--.++...+......-.++.+.++|..+.+.+.++.....-..++  + ++..|+.+..++.|.
T Consensus        60 --------~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~~L~vSdgs~~l~  127 (243)
T 3mbr_X           60 --------EVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDSHLYMSDGTAVIR  127 (243)
T ss_dssp             --------ECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSSCEEEECSSSEEE
T ss_pred             --------eCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCCEEEEECCCCeEE
Confidence                    01111 11123444443345556678999999999999999997655445555  4 566666666688999


Q ss_pred             EEeCCCCeEEEeccCC------CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc-------ccCCCC
Q 006909          335 IWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-------KTSGNK  401 (626)
Q Consensus       335 iwd~~~~~~~~~~~~~------~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~  401 (626)
                      ++|..+.+........      ..++.+.+. +|+..+..-.+..|.+.|..+++... .+.+.+-.       ......
T Consensus       128 ~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~-~idl~~l~~~~~~~~~~~~~v  205 (243)
T 3mbr_X          128 KLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA-WIDLQALVPDADALTDSTNDV  205 (243)
T ss_dssp             EECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE-EEECGGGSTTTTSCCCTTSSC
T ss_pred             EEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE-EEECCcCccccccccCCcCCc
Confidence            9999987766533321      345566664 67655445467899999999887643 34333211       112346


Q ss_pred             eEEEEEcCCCCcEEEEE
Q 006909          402 ITGIQFSRDESQRIMIT  418 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~  418 (626)
                      .++|+++|++..++++|
T Consensus       206 lNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          206 LNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEEEETTTTEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEC
Confidence            78999999875555554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.32  E-value=0.00023  Score=70.56  Aligned_cols=193  Identities=11%  Similarity=0.020  Sum_probs=123.5

Q ss_pred             cceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--------------------CCCCeEEEEEeeCCCCEEEEE
Q 006909          269 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       269 ~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--------------------~~~~v~~~~~~p~~~~~l~s~  327 (626)
                      ....+++|.+++ .++++..++.|..||..++.......                    ....+.++++.+ +...|+.+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEE
Confidence            456678898888 48888889999999987654432110                    013578899986 44556666


Q ss_pred             eCCCcEEEEeCCCCeEEEecc-----CCCCeEEEEEee-CCCEEEEEec-----------------CCcEEEEEcCCCce
Q 006909          328 SIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIP-DGKGFIVGSI-----------------TGTCHFYKASGNDL  384 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~~~~~-----~~~~i~~i~~sp-~g~~l~~g~~-----------------dg~i~i~d~~~~~~  384 (626)
                      ...+.|..+|..++....+..     .......+++.+ +|+..++-..                 ++.|..||..+...
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            555668889987665433221     113468899999 8976665432                 36788888766543


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909          385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISI  460 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~g~~l~s~  460 (626)
                      ......+        .....++++|+|..++++-...+.|.+|+...    ....+..  ..+ ...++++++|++.++.
T Consensus       178 ~~~~~~~--------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          178 TLLLKEL--------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EEEEEEE--------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred             EEeccCC--------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence            2211111        34567999999843444556678999999753    1222222  223 7889999999877766


Q ss_pred             eC----------CccEEEEECCC
Q 006909          461 GD----------DCRVYVWNYDE  473 (626)
Q Consensus       461 s~----------dg~I~iwd~~~  473 (626)
                      ..          .+.|..+|...
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~G  269 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEFG  269 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTTS
T ss_pred             cCcccccccCCCccEEEEECCCC
Confidence            54          45677777643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=0.004  Score=69.88  Aligned_cols=198  Identities=12%  Similarity=0.055  Sum_probs=130.0

Q ss_pred             ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee----cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909          268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  343 (626)
Q Consensus       268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~  343 (626)
                      ...|.++...+++.|..|+.++-|..||..++......    .....|.++...+ ++.+. .|+.++-|..+|..+++.
T Consensus       362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLW-FGTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEE-EEETTEEEEEECSSSCEE
T ss_pred             CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEE-EEeccCCEEEEcCCCCcE
Confidence            35699999888888888887777999998765433211    1345788988876 66554 467667799999988876


Q ss_pred             EEecc---CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909          344 VDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  420 (626)
Q Consensus       344 ~~~~~---~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~  420 (626)
                      .....   ....|.++...++|. |.+|+. +.+..||..+......  ............|.++...++|  .|.+|+.
T Consensus       440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~--~~~~~~~~~~~~i~~i~~d~~g--~lWigt~  513 (781)
T 3v9f_A          440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHH--YDTSNSQLLENFVRSIAQDSEG--RFWIGTF  513 (781)
T ss_dssp             EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEE--ECTTTSSCSCSCEEEEEECTTC--CEEEEES
T ss_pred             EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEec--ccCcccccccceeEEEEEcCCC--CEEEEEc
Confidence            65532   346788888887775 666666 5688899876554221  1111011123678999998887  4555665


Q ss_pred             CCcEEEEeCCcce-eeeeec--CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          421 DSKLRILDGVDVI-HKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       421 dg~i~iwd~~~~~-~~~~~~--~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++-|..||..... ..+...  -....|.++...++|.+.++.. +|.|..||..+.
T Consensus       514 ~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~  569 (781)
T 3v9f_A          514 GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF  569 (781)
T ss_dssp             SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred             CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence            4557778865432 222211  1235688999989998766554 676588887765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.28  E-value=0.00095  Score=66.92  Aligned_cols=197  Identities=6%  Similarity=-0.052  Sum_probs=124.7

Q ss_pred             cceEEEEEcCC-CeEE-EEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909          269 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  345 (626)
Q Consensus       269 ~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~  345 (626)
                      ..+..++|.+. +.|+ +-...+.|..+++........+. .......+++.+.+++++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            45789999964 5554 44567889999988665444333 234567889987455555666667889999987654333


Q ss_pred             ec-cCCCCeEEEEEeeCCCEEEEEe-cC-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909          346 WA-DVRDVISAICYIPDGKGFIVGS-IT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  422 (626)
Q Consensus       346 ~~-~~~~~i~~i~~sp~g~~l~~g~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg  422 (626)
                      +. ..-.....++++|.+..|+... .. +.|..+++.+.....  + ..    ........++++|++..++++-...+
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~-~~----~~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--I-AD----THLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--S-CC----SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE--E-EE----CCCCCcceEEEeCCCCEEEEEECCCC
Confidence            32 3335678999999666655544 34 678888877643321  1 11    11246789999987655666666678


Q ss_pred             cEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          423 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       423 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .|..+|.... ...+. ........++++ ..+...++-...+.|..++..++
T Consensus       226 ~I~~~~~dG~~~~~~~-~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          226 VIERANLDGSHRKAVI-SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             EEEEEETTSCSCEEEE-CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEeCCCCceEEEE-eCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence            8999986532 22222 123456677888 34555555556778888885444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.26  E-value=0.00053  Score=69.84  Aligned_cols=198  Identities=6%  Similarity=-0.055  Sum_probs=125.8

Q ss_pred             ccceEEEEEcCC-CeEE-EEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909          268 KGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  344 (626)
Q Consensus       268 ~~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~  344 (626)
                      ...+..++|.+. +.|+ +-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++......
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            345789999964 5544 44566889999988665444433 23355778888745555566566778999988765433


Q ss_pred             Eec-cCCCCeEEEEEeeCCCEEEEEec-C-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          345 DWA-DVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       345 ~~~-~~~~~i~~i~~sp~g~~l~~g~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                      .+. ..-.....++++|.+..|+.... . +.|..+++.+.....  +....     ......|+++|++..++++-+..
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~~-----~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IADTH-----LFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EECSS-----CSCEEEEEEEGGGTEEEEEETTT
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE--EEECC-----CCCeeeEEEeCCCCEEEEEECCC
Confidence            332 33356789999997766665543 3 678888877643321  11111     24578999998765566666677


Q ss_pred             CcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          422 SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       422 g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +.|..+|.... ...+.. .......++++ ..+..+++-...+.|..++..++
T Consensus       268 ~~I~~~d~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          268 HVIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             TEEEEECTTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEeCCCCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence            88999986532 222221 23446678888 34555556666788888885554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.24  E-value=0.00037  Score=72.09  Aligned_cols=242  Identities=12%  Similarity=0.097  Sum_probs=137.3

Q ss_pred             cEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          183 CIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       183 ~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      ....|+++| ++..|..+...+.|+.+|+.+..                                              +
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~----------------------------------------------v  171 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY----------------------------------------------V  171 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE----------------------------------------------E
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE----------------------------------------------E
Confidence            456789998 45556555544778888876522                                              2


Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeCC-C----cEEEeccCCCeee--EeecCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSMD-K----TVRMWQVGCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d-~----~v~iwd~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                      ..+.........++|++++ .|+.+... +    .+.+.+. .+...  ..+........++++|.++.++++-..++.|
T Consensus       172 ~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V  250 (430)
T 3tc9_A          172 STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQV  250 (430)
T ss_dssp             EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEE
Confidence            2222234567899999987 46665542 1    2333333 22221  2222233456788998556666665567889


Q ss_pred             EEEeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCceee---eEEeec-ccc--------ccC
Q 006909          334 RIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKL---EKVDFH-DRK--------KTS  398 (626)
Q Consensus       334 ~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~~---~~~~~~-~~~--------~~~  398 (626)
                      ..++..++....+.  ........++|+|+|++|+++ ...+.|..++........   ..+.-. +..        ...
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~  330 (430)
T 3tc9_A          251 FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKAR  330 (430)
T ss_dssp             EEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCB
T ss_pred             EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceE
Confidence            99999877653322  223457889999999965555 456789998876431111   111100 000        000


Q ss_pred             CCCeE-EEEEc--------CCCCcEEEEEeCCCcEEEEeCCcceeeeeecC----------------CCCCeEEEEEcCC
Q 006909          399 GNKIT-GIQFS--------RDESQRIMITSEDSKLRILDGVDVIHKFKGLP----------------KSGSQMSASFTTT  453 (626)
Q Consensus       399 ~~~i~-~l~~s--------~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~----------------~~~~v~~~~~sp~  453 (626)
                      -.... .++..        ++| .++++-...+.|+.++.......+.+..                .-.....++++|+
T Consensus       331 ~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~  409 (430)
T 3tc9_A          331 MHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE  409 (430)
T ss_dssp             BSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETT
T ss_pred             eCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECC
Confidence            12233 45553        334 4555555667888888543333333320                0125789999995


Q ss_pred             -CCEEEEEeCCccEEEEECC
Q 006909          454 -GKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       454 -g~~l~s~s~dg~I~iwd~~  472 (626)
                       +.++++-...+.|+.++++
T Consensus       410 ~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          410 RECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TTEEEEEEGGGTEEEEEEEC
T ss_pred             CCEEEEEECCCCeEEEEccC
Confidence             5555555556788887764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.23  E-value=0.0006  Score=70.51  Aligned_cols=243  Identities=10%  Similarity=0.068  Sum_probs=138.9

Q ss_pred             cEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          183 CIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       183 ~V~~l~fspd--g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      ....|+|+|+  ...|..+...+.|+.++..++.                                              
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~----------------------------------------------  173 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY----------------------------------------------  173 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE----------------------------------------------
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE----------------------------------------------
Confidence            3568899985  3344444433788888886532                                              


Q ss_pred             ceeeccCccceEEEEEcCCCeEEEEeCCC-----cEEEeccCCCee-eEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909          261 LQELHGHKGDVLDLAWSNSNYLLSCSMDK-----TVRMWQVGCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR  334 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~~l~s~s~d~-----~v~iwd~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~  334 (626)
                      +..+.........+++++++.|+.+...+     .+...+...+.. ...+........++++|.++.++++-..++.|+
T Consensus       174 v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~  253 (433)
T 4hw6_A          174 VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMIS  253 (433)
T ss_dssp             EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEE
T ss_pred             EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEE
Confidence            22222234568899999988555554322     133333322111 012222344567788884555555555678899


Q ss_pred             EEeCCCCeE-EEec--cCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCC--Cceee-eEEeec-cc--------cccC
Q 006909          335 IWGVCEKRV-VDWA--DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKL-EKVDFH-DR--------KKTS  398 (626)
Q Consensus       335 iwd~~~~~~-~~~~--~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~--~~~~~-~~~~~~-~~--------~~~~  398 (626)
                      .+|..++.. ..+.  ........++|+|+|++|+++. ..+.|+.++...  ..... ..+.-. +.        ....
T Consensus       254 ~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~  333 (433)
T 4hw6_A          254 SYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGAR  333 (433)
T ss_dssp             EECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSB
T ss_pred             EEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceE
Confidence            999987665 2221  2222345799999999666554 467899888753  22110 011100 00        0011


Q ss_pred             CCCeEEEEE---------cCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCC----------------CCCeEEEEEc-C
Q 006909          399 GNKITGIQF---------SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK----------------SGSQMSASFT-T  452 (626)
Q Consensus       399 ~~~i~~l~~---------s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------~~~v~~~~~s-p  452 (626)
                      -.....+++         .++| .++++-...+.|+.++....+..+.+...                -.....++++ +
T Consensus       334 ~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~  412 (433)
T 4hw6_A          334 LWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK  412 (433)
T ss_dssp             CSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT
T ss_pred             EcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC
Confidence            235678999         6665 56666666789999986443444433211                1246789999 5


Q ss_pred             CCCEEEEEeCCccEEEEECC
Q 006909          453 TGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       453 ~g~~l~s~s~dg~I~iwd~~  472 (626)
                      +|.++++=...+.|+.++++
T Consensus       413 ~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          413 RKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTEEEEEEGGGTEEEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEecC
Confidence            66666665566788887764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.19  E-value=5.5e-05  Score=83.16  Aligned_cols=192  Identities=11%  Similarity=0.091  Sum_probs=120.2

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCC-----------e-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-----------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  346 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~  346 (626)
                      ++.++.++.++.|..+|..+|+.+..+.....           + ..+++   .+..++.++.|+.|..+|..+++.+-.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence            56888888899999999999999888753221           0 12233   346788888999999999999887632


Q ss_pred             ccCC-----CCeEE-EEEeeCCCEEEEEec------CCcEEEEEcCCCceeeeEEeeccccc------------------
Q 006909          347 ADVR-----DVISA-ICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKK------------------  396 (626)
Q Consensus       347 ~~~~-----~~i~~-i~~sp~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~~------------------  396 (626)
                      ....     ..+.+ ..+  .+..++++..      +|.|+.+|..+++.............                  
T Consensus       143 ~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  220 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD  220 (668)
T ss_dssp             EECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred             eccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence            2221     11111 111  2345666543      58999999998887554221110000                  


Q ss_pred             ------cCCCCeEEEEEcCCCCcEEEEEeCCC-------------------cEEEEeCCcceeeeee--cCCC-------
Q 006909          397 ------TSGNKITGIQFSRDESQRIMITSEDS-------------------KLRILDGVDVIHKFKG--LPKS-------  442 (626)
Q Consensus       397 ------~~~~~i~~l~~s~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~--~~~~-------  442 (626)
                            ........+++.|++ .+++.++.++                   .|..+|..+.......  ..|.       
T Consensus       221 ~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~  299 (668)
T 1kv9_A          221 QYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT  299 (668)
T ss_dssp             CHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             ceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence                  011122357888875 5777777665                   3889997765554443  2122       


Q ss_pred             CCeEEEEEcCCCC---EEEEEeCCccEEEEECCCCCC
Q 006909          443 GSQMSASFTTTGK---HIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       443 ~~v~~~~~sp~g~---~l~s~s~dg~I~iwd~~~~~~  476 (626)
                      .++....+..+|+   .|+.++.+|.++++|..++..
T Consensus       300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence            2333333444675   688999999999999998844

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.19  E-value=0.00021  Score=76.93  Aligned_cols=196  Identities=10%  Similarity=-0.015  Sum_probs=116.3

Q ss_pred             CCeEEEEeC------CCcEEEeccCCCeeeEeecCCCCe---------------------------------------EE
Q 006909          279 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC  313 (626)
Q Consensus       279 ~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~~~v---------------------------------------~~  313 (626)
                      ++.++.++.      ++.|..+|..+|+.+..+......                                       ..
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~  239 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW  239 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence            455666554      789999999999988776432211                                       13


Q ss_pred             EEEeeCCCCEEEEEeCC----------------CcEEEEeCCCCeEEEecc---CC-------CCeEEEEEeeCCC---E
Q 006909          314 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---G  364 (626)
Q Consensus       314 ~~~~p~~~~~l~s~s~d----------------g~v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g~---~  364 (626)
                      +++.+ ....++.+..+                +.|..+|..+++.+-...   +.       ....-+...++|+   .
T Consensus       240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~  318 (571)
T 2ad6_A          240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL  318 (571)
T ss_dssp             CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred             EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence            56666 55666666532                359999999988753221   11       1111223335774   5


Q ss_pred             EEEEecCCcEEEEEcCCCceeeeEEeecccc------c-cCCCCe--------------------------EEEEEcCCC
Q 006909          365 FIVGSITGTCHFYKASGNDLKLEKVDFHDRK------K-TSGNKI--------------------------TGIQFSRDE  411 (626)
Q Consensus       365 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~------~-~~~~~i--------------------------~~l~~s~~~  411 (626)
                      +++++.+|.++++|..+++..... .+....      . ....++                          ..++++|+.
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~-~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAE-KVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEE-ESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEeee-cccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            778899999999999888765432 111100      0 000011                          245778875


Q ss_pred             CcEEEEEe-------------------------------------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC
Q 006909          412 SQRIMITS-------------------------------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  454 (626)
Q Consensus       412 ~~~l~~~s-------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g  454 (626)
                       .++++.+                                     .++.|..||..+.....+.. ....+....+...+
T Consensus       398 -g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~~~~~~t~g  475 (571)
T 2ad6_A          398 -RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAWGGTLYTKG  475 (571)
T ss_dssp             -TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETT
T ss_pred             -CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCccceeEEECC
Confidence             3554442                                     34788999977654444332 11222222223346


Q ss_pred             CEEEEEeCCccEEEEECCCCCCCC
Q 006909          455 KHIISIGDDCRVYVWNYDELCFPS  478 (626)
Q Consensus       455 ~~l~s~s~dg~I~iwd~~~~~~~~  478 (626)
                      ..++.++.|+.|+.||..++....
T Consensus       476 g~v~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCCEEE
Confidence            778889999999999999885443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.15  E-value=0.0002  Score=78.62  Aligned_cols=195  Identities=11%  Similarity=0.092  Sum_probs=121.3

Q ss_pred             CCeEEEEeC------CCcEEEeccCCCeeeEeecCC--C------------------------------CeEEEEEeeCC
Q 006909          279 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHH--N------------------------------YVTCVQFNPID  320 (626)
Q Consensus       279 ~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~--~------------------------------~v~~~~~~p~~  320 (626)
                      ++.++.+..      ++.|..+|..+|+.+..+...  .                              ....+++.| .
T Consensus       162 ~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~  240 (668)
T 1kv9_A          162 KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-E  240 (668)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-T
T ss_pred             CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-C
Confidence            455555443      588999999999988877421  0                              012467888 7


Q ss_pred             CCEEEEEeCCC-------------------cEEEEeCCCCeEEEecc---CC-------CCeEEEEEeeCCC---EEEEE
Q 006909          321 DNYFISGSIDG-------------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVG  368 (626)
Q Consensus       321 ~~~l~s~s~dg-------------------~v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g~---~l~~g  368 (626)
                      .+.++.++.++                   .|..+|..+++.+-...   +.       .+.....+..+|+   .++++
T Consensus       241 ~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~  320 (668)
T 1kv9_A          241 LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA  320 (668)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEE
Confidence            77888887665                   39999999988763222   21       2333334445775   68899


Q ss_pred             ecCCcEEEEEcCCCceeeeEEeecc-----ccc-cCCC------------------------CeEEEEEcCCCCcEEEEE
Q 006909          369 SITGTCHFYKASGNDLKLEKVDFHD-----RKK-TSGN------------------------KITGIQFSRDESQRIMIT  418 (626)
Q Consensus       369 ~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~-~~~~------------------------~i~~l~~s~~~~~~l~~~  418 (626)
                      +.+|.++++|..+++..... .+..     ... ....                        .-..++++|+. .++++.
T Consensus       321 ~~~G~l~~lD~~tG~~l~~~-~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~  398 (668)
T 1kv9_A          321 PKNGFFYVLDRTNGKLISAE-KFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIP  398 (668)
T ss_dssp             CTTSEEEEEETTTCCEEEEE-ESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred             CCCCEEEEEECCCCCEeccc-cccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEe
Confidence            99999999999988865221 0000     000 0000                        01126777775 343331


Q ss_pred             ------------------------------------eCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 006909          419 ------------------------------------SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       419 ------------------------------------s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~  462 (626)
                                                          ..+|.|..||..+.....+... ........+...+.+|+.++.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~vf~g~~  477 (668)
T 1kv9_A          399 YQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTA  477 (668)
T ss_dssp             EEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECT
T ss_pred             ccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC-CCCCcCceeEeCCCEEEEECC
Confidence                                                1237899999887665544321 222333344456889999999


Q ss_pred             CccEEEEECCCCCCC
Q 006909          463 DCRVYVWNYDELCFP  477 (626)
Q Consensus       463 dg~I~iwd~~~~~~~  477 (626)
                      |+.|++||..++...
T Consensus       478 dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          478 AGQMHAYSADKGEAL  492 (668)
T ss_dssp             TSEEEEEETTTCCEE
T ss_pred             cccchhhhhhcChhh
Confidence            999999999988443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.13  E-value=0.0054  Score=60.43  Aligned_cols=199  Identities=12%  Similarity=-0.038  Sum_probs=124.0

Q ss_pred             ccceEEEEEcCC-CeEE-EEeCCCcEEEeccCC----CeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909          268 KGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  340 (626)
Q Consensus       268 ~~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~----~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~  340 (626)
                      ...+..++|.+. +.|+ +-...+.|..+++.+    ......+. .......+++.+.+++++++-...+.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            345788999975 4444 555568899999876    22222232 2245678899873455555656678999999887


Q ss_pred             CeEEEecc-CCCCeEEEEEeeCCCEEEEEecC--CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          341 KRVVDWAD-VRDVISAICYIPDGKGFIVGSIT--GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       341 ~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      .....+.. .-.....++++|.+..|+.+...  +.|..+++.+.....  +...     .......+++++++..++++
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~~~-----~~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE-----NIQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECS-----SCSCEEEEEEETTTTEEEEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EEEC-----CCCCceEEEEeccCCEEEEE
Confidence            55443332 34567899999976666655543  688888876543321  1111     12567899999887555566


Q ss_pred             EeCCCcEEEEeCCc-ceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          418 TSEDSKLRILDGVD-VIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       418 ~s~dg~i~iwd~~~-~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      -+..+.|..+|... ....+.. ........++++. .+..+++-...+.|..++..++
T Consensus       182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            66678999999752 2233322 1223456778875 3555556566788999987654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.11  E-value=0.0002  Score=79.92  Aligned_cols=239  Identities=8%  Similarity=0.027  Sum_probs=130.1

Q ss_pred             cccC-cEEEEEEc-CCCCEEEEEeC-CC----cEEEEEcCCC-cceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          179 AHKG-CIWTLKFS-PDGRYLASGGE-DG----VVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       179 ~H~~-~V~~l~fs-pdg~~Latgs~-Dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      +|.- .+...+|| |||++||-+.. +|    +|+++|+.++ ...                                  
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----------------------------------  215 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----------------------------------  215 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----------------------------------
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----------------------------------
Confidence            4553 68899999 99998886543 33    4999999874 210                                  


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCC-----CcEEEeccCCCee--eEee--cCCCCeEEEEEeeCC
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQC--LNVF--DHHNYVTCVQFNPID  320 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d-----~~v~iwd~~~~~~--~~~~--~~~~~v~~~~~~p~~  320 (626)
                             .   ..+.   .....++|+||+ .|+....+     ..|.++++.+++.  ...+  ........+.|+| +
T Consensus       216 -------~---~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-D  281 (751)
T 2xe4_A          216 -------A---DKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-D  281 (751)
T ss_dssp             -------C---CCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-T
T ss_pred             -------C---cccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-C
Confidence                   0   0011   113467899997 66655554     3588888887642  2333  2334567889999 9


Q ss_pred             CCEEEEEeC---CCcEEEEeCCCC--eE--EEecc-CCCCeEEEEEeeCCCEEEEEec-C--C--cEEEEEcCCCceeee
Q 006909          321 DNYFISGSI---DGKVRIWGVCEK--RV--VDWAD-VRDVISAICYIPDGKGFIVGSI-T--G--TCHFYKASGNDLKLE  387 (626)
Q Consensus       321 ~~~l~s~s~---dg~v~iwd~~~~--~~--~~~~~-~~~~i~~i~~sp~g~~l~~g~~-d--g--~i~i~d~~~~~~~~~  387 (626)
                      +++|+..+.   ...|.++|+.++  ..  ..+.. ......++.|+. |+.|+..+. +  +  .|..+++.+... ..
T Consensus       282 g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~  359 (751)
T 2xe4_A          282 TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-WS  359 (751)
T ss_dssp             SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC-CC
T ss_pred             CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-ce
Confidence            998877653   346888898765  33  33332 234445554433 555555443 3  2  566666654211 11


Q ss_pred             E-EeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEeC-------Ccc--eeeeeecCCCCCeEEEEE----c
Q 006909          388 K-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--LRILDG-------VDV--IHKFKGLPKSGSQMSASF----T  451 (626)
Q Consensus       388 ~-~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~--i~iwd~-------~~~--~~~~~~~~~~~~v~~~~~----s  451 (626)
                      . +..+.    ....+..+.+.  +..++++...++.  |.++++       ...  ...+... ....+..+.+    +
T Consensus       360 ~~li~~~----~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~-~~~~~~~~~~~~~~~  432 (751)
T 2xe4_A          360 HVLVDHS----EDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVME-EPIFTVHLVESQMLE  432 (751)
T ss_dssp             CEEECCC----SSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCC-CSSCEEEECGGGCCC
T ss_pred             eeEECCC----CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCC-CceeEEEeccCcccC
Confidence            1 11111    01234556655  3357777777775  445564       221  2222211 1122333322    3


Q ss_pred             CCCC-EEEEEeCC---ccEEEEECCCC
Q 006909          452 TTGK-HIISIGDD---CRVYVWNYDEL  474 (626)
Q Consensus       452 p~g~-~l~s~s~d---g~I~iwd~~~~  474 (626)
                      +++. ++++.+..   ..++.+|+.++
T Consensus       433 ~~~~~l~~~~ss~~~P~~~~~~d~~~~  459 (751)
T 2xe4_A          433 YEEPTFRMEYSSLATPNTWFDVSPQDH  459 (751)
T ss_dssp             TTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred             CCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            4554 44444432   56888888765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.05  E-value=0.0041  Score=62.24  Aligned_cols=197  Identities=10%  Similarity=-0.029  Sum_probs=125.8

Q ss_pred             ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc-
Q 006909          270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-  348 (626)
Q Consensus       270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-  348 (626)
                      ..+|.+..++..|+.+.. ..|+..++..............+..++|++.++.++++-...+.|..+++.++....+.. 
T Consensus        35 ~~~C~~~~~~~~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           35 RRSCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             SSCEEESSSCCEEEEECB-SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             CCcccccccCceeEeecc-cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            345555556555554443 458888887766655555556689999998344445555567889999988765444322 


Q ss_pred             CCCCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEE
Q 006909          349 VRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRI  426 (626)
Q Consensus       349 ~~~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~i  426 (626)
                      .......+++.+.+..| ++-...+.|.++++.+.....  + ...    .......+++.|.+..++.+-... +.|..
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l-~~~----~l~~P~~iavdp~~g~ly~td~~~~~~I~r  186 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--L-LWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEA  186 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--E-ECT----TCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--E-EeC----CCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence            22456788998855555 444556789999987654321  1 111    124678999999764555555555 78888


Q ss_pred             EeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909          427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       427 wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~  474 (626)
                      ++...................++++|++..|+.+. ..+.|..++++..
T Consensus       187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            88653222222222345678999998777766654 4578999998764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.04  E-value=0.0079  Score=61.41  Aligned_cols=200  Identities=12%  Similarity=-0.029  Sum_probs=125.3

Q ss_pred             CccceEEEEEcCC-CeEE-EEeCCCcEEEeccCCC----eeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909          267 HKGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  339 (626)
Q Consensus       267 h~~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~  339 (626)
                      ....+..++|++. +.|+ +-...+.|+.+++...    .....+. .......+++.+..++++++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            3457889999974 5554 4445678888888752    2223333 445678899987455566666667889999998


Q ss_pred             CCeEEEecc-CCCCeEEEEEeeCCCEEEEEec--CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          340 EKRVVDWAD-VRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       340 ~~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      +.....+.. .-.....|+++|.+..|+....  .+.|...++.+.....  +...     .......|++++++..+++
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~~-----~l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE-----NIQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EECS-----SCSCEEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEEC-----CCCceEEEEEEeCCCEEEE
Confidence            765544333 3455789999997666666553  3688888887654322  1111     1256789999988755555


Q ss_pred             EEeCCCcEEEEeCCc-ceeee-eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          417 ITSEDSKLRILDGVD-VIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~-~~~~~-~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +-...+.|..+|... ....+ ..........++++. .+..+++-...+.|..+|..++
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            556678899999753 22222 221223455677773 3445555556788998986655

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.01  E-value=0.0023  Score=65.12  Aligned_cols=195  Identities=9%  Similarity=-0.028  Sum_probs=124.4

Q ss_pred             EEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc-CC
Q 006909          272 LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VR  350 (626)
Q Consensus       272 ~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~  350 (626)
                      .|.+..+...|+.+.. ..|+..++..............+..++|++.++.++++-...+.|..+++.++....+.. ..
T Consensus        80 ~C~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~  158 (386)
T 3v65_B           80 SCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL  158 (386)
T ss_dssp             CEEECSSCCEEEEECB-SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred             eECCccccceeEeecC-ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence            3445455555555443 568888988776655555566789999998344455555567889999998776544332 22


Q ss_pred             CCeEEEEEeeCCCEEE-EEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEe
Q 006909          351 DVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILD  428 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~iwd  428 (626)
                      .....+++.+.+..|+ +-...+.|.++++.+.....  +....     ......+++.|.+..++++-... +.|..++
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--l~~~~-----l~~P~giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LLWQS-----LEKPRAIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE--EECSS-----CSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE--eecCC-----CCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence            3456788888655554 44556788888877543221  11111     25678999998765555555455 7888888


Q ss_pred             CCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909          429 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       429 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~  474 (626)
                      ...................++|+|++..|+.+. ..+.|..++++..
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            653322222222345678999998777666654 4578999998753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.94  E-value=0.0011  Score=71.20  Aligned_cols=197  Identities=9%  Similarity=-0.019  Sum_probs=114.7

Q ss_pred             CCeEEEEe------CCCcEEEeccCCCeeeEeecCCCCe---------------------------------------EE
Q 006909          279 SNYLLSCS------MDKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC  313 (626)
Q Consensus       279 ~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~~~~v---------------------------------------~~  313 (626)
                      ++.++.++      .++.|+.+|..+|+.+..+....+.                                       ..
T Consensus       166 ~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~  245 (599)
T 1w6s_A          166 KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGW  245 (599)
T ss_dssp             TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccc
Confidence            45555554      3789999999999988777532211                                       13


Q ss_pred             EEEeeCCCCEEEEEeCC----------------CcEEEEeCCCCeEEEec---cCCC-------CeEEEEEe-eCC---C
Q 006909          314 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWA---DVRD-------VISAICYI-PDG---K  363 (626)
Q Consensus       314 ~~~~p~~~~~l~s~s~d----------------g~v~iwd~~~~~~~~~~---~~~~-------~i~~i~~s-p~g---~  363 (626)
                      +++.+ ....++.+..+                +.|..+|..+++.+-..   .+..       ...-+... .+|   +
T Consensus       246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~  324 (599)
T 1w6s_A          246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK  324 (599)
T ss_dssp             CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred             eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence            45666 66777777654                37999999998875322   1211       11112222 467   4


Q ss_pred             EEEEEecCCcEEEEEcCCCceeeeEEeeccc-----cc-cCCC--------------------------CeEEEEEcCCC
Q 006909          364 GFIVGSITGTCHFYKASGNDLKLEKVDFHDR-----KK-TSGN--------------------------KITGIQFSRDE  411 (626)
Q Consensus       364 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~-~~~~--------------------------~i~~l~~s~~~  411 (626)
                      .++.++.+|.++++|..+++...........     .. ....                          .-..++++|+.
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  404 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR  404 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence            6777899999999999988765432110000     00 0000                          11245566664


Q ss_pred             CcEEEEEe---------------------------------------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC
Q 006909          412 SQRIMITS---------------------------------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT  452 (626)
Q Consensus       412 ~~~l~~~s---------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  452 (626)
                       .++++..                                       ..|.|..||..+.....+.. ...+...-....
T Consensus       405 -~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~t  482 (599)
T 1w6s_A          405 -ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMAT  482 (599)
T ss_dssp             -TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEE
T ss_pred             -CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCccCcceEe
Confidence             3333321                                       34678888877654444331 111111111223


Q ss_pred             CCCEEEEEeCCccEEEEECCCCCCCC
Q 006909          453 TGKHIISIGDDCRVYVWNYDELCFPS  478 (626)
Q Consensus       453 ~g~~l~s~s~dg~I~iwd~~~~~~~~  478 (626)
                      .+.+++.++.|+.|+.||..++....
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~lW  508 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDLLW  508 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCCEEE
Confidence            57788889999999999999985443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.93  E-value=0.0034  Score=61.83  Aligned_cols=179  Identities=8%  Similarity=-0.064  Sum_probs=113.4

Q ss_pred             CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC----CeEEEec-cCCCCeEEEEEeeCCC
Q 006909          289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPDGK  363 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~----~~~~~~~-~~~~~i~~i~~sp~g~  363 (626)
                      ..|+..|+.+......+.....+.+++|++.++.++++-..++.|..+++.+    ....... ..-.....+++.+.+.
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            4688899988776666666667899999983344455555568899999876    2222222 2224567899987555


Q ss_pred             EEE-EEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEeCCcceeeeeecCC
Q 006909          364 GFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGLPK  441 (626)
Q Consensus       364 ~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~iwd~~~~~~~~~~~~~  441 (626)
                      .|+ +-...+.|.++++.+..... ... .     .......+++.|.+..++++.... +.|..++.............
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~~~-~~~-~-----~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~  162 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKRKT-LFR-E-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  162 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEE-EEE-C-----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred             eEEEEECCCCEEEEEeCCCCceEE-EEE-C-----CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC
Confidence            554 44567899999987654321 111 1     125678999998764444444333 68888886532222112123


Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909          442 SGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       442 ~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~  474 (626)
                      -.....++++|++..|+.+. ..+.|..+|++..
T Consensus       163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            45788999999877776654 4578999999753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.93  E-value=0.00071  Score=75.48  Aligned_cols=193  Identities=13%  Similarity=0.080  Sum_probs=108.8

Q ss_pred             ceEEEEEc-CCC-eEEE-EeCC----CcEEEeccCCC-eeeEeecCCCCeEEEEEeeCCCCEEEEEeCC-----CcEEEE
Q 006909          270 DVLDLAWS-NSN-YLLS-CSMD----KTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSID-----GKVRIW  336 (626)
Q Consensus       270 ~V~~l~~s-~~~-~l~s-~s~d----~~v~iwd~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-----g~v~iw  336 (626)
                      .+...+|| ||| +|+. .+.+    .+|+++|+.++ +.+.. ........++|+| +++.|+....+     ..|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGP-DHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECS-STTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEec-CCCEEEEEEECCCCCCCEEEEE
Confidence            67889999 998 4553 3333    35999999988 63211 0011134678999 98888777665     258888


Q ss_pred             eCCCCe----EEEeccCCCCeEEEEEeeCCCEEEEEec---CCcEEEEEcCCCceee--eEEeeccccccCCCCeEEEEE
Q 006909          337 GVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       337 d~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~---dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~  407 (626)
                      ++.++.    ++...........+.|+|||++|+....   ...|.++|+.+.....  ..+. ..    ......++.|
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~----~~~~~~s~~~  327 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR-PR----EKGVRYDVQM  327 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS-CC----CTTCCEEEEE
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee-cC----CCCceEEEee
Confidence            887653    2221123344678899999999887663   3467888887652211  1111 11    1244555655


Q ss_pred             cCCCCcEEEEEeCC----CcEEEEeCCcc--eee-eeecCCCCCeEEEEEcCCCCEEEEEeCCcc--EEEEEC
Q 006909          408 SRDESQRIMITSED----SKLRILDGVDV--IHK-FKGLPKSGSQMSASFTTTGKHIISIGDDCR--VYVWNY  471 (626)
Q Consensus       408 s~~~~~~l~~~s~d----g~i~iwd~~~~--~~~-~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~--I~iwd~  471 (626)
                      +. |..+++.+..+    ..|..+|....  ... +........+..+.+. .+.++++...++.  |+++++
T Consensus       328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            54 43555555544    35666776532  122 2221111234455554 2334455666664  555664

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=0.0043  Score=64.47  Aligned_cols=205  Identities=8%  Similarity=0.039  Sum_probs=119.1

Q ss_pred             cceEEEEE-------cCCC-eEEEEeCCC-------cEEEeccCC-Ceee-----EeecCCCCeEEEEEeeCCCCEEEEE
Q 006909          269 GDVLDLAW-------SNSN-YLLSCSMDK-------TVRMWQVGC-NQCL-----NVFDHHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       269 ~~V~~l~~-------s~~~-~l~s~s~d~-------~v~iwd~~~-~~~~-----~~~~~~~~v~~~~~~p~~~~~l~s~  327 (626)
                      .....|+|       ++++ .|+.+...+       .|.+.+... +...     ..+........++++|.++.++++-
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence            45788999       8887 466665543       255564333 2221     1221112345778898555666666


Q ss_pred             eCCCcEEEEeCC-------CCeE--------------EEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCcee
Q 006909          328 SIDGKVRIWGVC-------EKRV--------------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLK  385 (626)
Q Consensus       328 s~dg~v~iwd~~-------~~~~--------------~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~  385 (626)
                      ..++.|..+|+.       ++..              +...........|+|+|+|+.|+++. ....|+.++.......
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~  345 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE  345 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence            677889999987       4443              11222334568999999999666554 5678888766543211


Q ss_pred             e---eEEeec-ccc--------ccCCCCeE-EEEEc-------CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCC----
Q 006909          386 L---EKVDFH-DRK--------KTSGNKIT-GIQFS-------RDESQRIMITSEDSKLRILDGVDVIHKFKGLPK----  441 (626)
Q Consensus       386 ~---~~~~~~-~~~--------~~~~~~i~-~l~~s-------~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----  441 (626)
                      .   ..+.-. +..        ...-.... .+...       ++| .++++-.....|+.++....+.++.+...    
T Consensus       346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~  424 (496)
T 3kya_A          346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSL  424 (496)
T ss_dssp             ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTCBEEEEEESCTTHHH
T ss_pred             ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCCCEEEEecccccccc
Confidence            1   111110 100        00112344 45554       344 56666667789999985544555544311    


Q ss_pred             ------------------CCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCC
Q 006909          442 ------------------SGSQMSASFTTT-GKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       442 ------------------~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~  474 (626)
                                        -.....++++++ |.++++=.....|+.++++..
T Consensus       425 ~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          425 ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             HHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             cCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence                              124678999986 666666666788999998764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.90  E-value=0.0099  Score=58.51  Aligned_cols=197  Identities=7%  Similarity=-0.050  Sum_probs=125.1

Q ss_pred             cceEEEEEcCC-CeE-EEEeCCCcEEEeccCCCeee-Eee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909          269 GDVLDLAWSNS-NYL-LSCSMDKTVRMWQVGCNQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  344 (626)
Q Consensus       269 ~~V~~l~~s~~-~~l-~s~s~d~~v~iwd~~~~~~~-~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~  344 (626)
                      ..+..++|.+. +.| .+-...+.|..+++..+... ..+ ..-.....+++.+..++++++-...+.|.++++.+....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            35678899874 544 45556678999998765321 122 223456788888745556666566788999998765433


Q ss_pred             Eec-cCCCCeEEEEEeeCCCEEEEEec--CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          345 DWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       345 ~~~-~~~~~i~~i~~sp~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                      .+. ........+++.|.+..|+....  .+.|..+++.+.....  +....     ......+++++++..++++-+..
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~~-----l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--IINSE-----IYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--EECSS-----CSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--EEECC-----CCCccEEEEeccCCEEEEEECCC
Confidence            332 44456789999997666666653  5788888877543221  11111     24678999999765556666677


Q ss_pred             CcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          422 SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       422 g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +.|..+|... ....+. ........++++.. +..+.+-...+.|..++..++
T Consensus       188 ~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          188 NFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             TEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence            8999998752 222222 12345567787753 344555556788999998665

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.89  E-value=0.002  Score=69.27  Aligned_cols=150  Identities=9%  Similarity=-0.032  Sum_probs=90.9

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCC-----CeEE-EEEeeCCCCEEEEEeC------CCcEEEEeCCCCeEEEe
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGSI------DGKVRIWGVCEKRVVDW  346 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-----~v~~-~~~~p~~~~~l~s~s~------dg~v~iwd~~~~~~~~~  346 (626)
                      ++.++.++.|+.|..+|..+|+.+..+....     .+.+ ...   .+..++.++.      ++.|..+|..+++.+-.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            4688888899999999999999987765322     2221 111   2345666654      78999999999886532


Q ss_pred             ccCCCC---------------------------------------eEEEEEeeCCCEEEEEecC----------------
Q 006909          347 ADVRDV---------------------------------------ISAICYIPDGKGFIVGSIT----------------  371 (626)
Q Consensus       347 ~~~~~~---------------------------------------i~~i~~sp~g~~l~~g~~d----------------  371 (626)
                      ......                                       ...+++.++...+++++.+                
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~  271 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence            211110                                       0235677777777777643                


Q ss_pred             CcEEEEEcCCCceeeeEEeecccc----ccCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEeCCcce
Q 006909          372 GTCHFYKASGNDLKLEKVDFHDRK----KTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDVI  433 (626)
Q Consensus       372 g~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~s~~~~--~~l~~~s~dg~i~iwd~~~~~  433 (626)
                      +.|..+|..+++.... .....+.    .....++. +....+|.  ..++.++.+|.+.++|..+..
T Consensus       272 ~~v~Ald~~tG~~~W~-~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  337 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWG-YQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             TEEEEEETTTCCEEEE-EESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEEecCCCcEEEE-ecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence            3589999998876543 2111100    01112222 22234552  256778889999999976543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.87  E-value=0.026  Score=55.68  Aligned_cols=190  Identities=10%  Similarity=0.044  Sum_probs=103.1

Q ss_pred             ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec----CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909          268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  343 (626)
Q Consensus       268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~  343 (626)
                      ...+.+|.|.+ +.++.++..+.|.. ..+.++.-....    +...+..+.+.+ ++..++.+ .++.|..- ...++.
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred             CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCC
Confidence            34678888877 44444555665443 223333333322    334577888776 66655554 45654322 222321


Q ss_pred             E--EeccCCCCeEEEEEeeCCCEEEEEecCCcEEE-EEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909          344 V--DWADVRDVISAICYIPDGKGFIVGSITGTCHF-YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  420 (626)
Q Consensus       344 ~--~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~  420 (626)
                      -  ........+..+.+.|++.+++++. .|.+.. .|-.....  .....     .....+..+.+.+++ . +++++.
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW--~~~~~-----~~~~~~~~~~~~~~g-~-~~~~~~  223 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAW--EPHNR-----TTSRRLHNMGFTPDG-R-LWMIVN  223 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSC--EEEEC-----CSSSCEEEEEECTTS-C-EEEEET
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCce--eECCC-----CCCCccceeEECCCC-C-EEEEeC
Confidence            1  1223455788999999988777664 444433 33211111  11111     123578899999986 3 455667


Q ss_pred             CCcEEEEeCCcce--eeeeec--CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          421 DSKLRILDGVDVI--HKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       421 dg~i~iwd~~~~~--~~~~~~--~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +|.+++.+.....  ..+...  .....+..+.+.+++..++++. ++.| ++..+.+
T Consensus       224 ~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG  279 (327)
T 2xbg_A          224 GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG  279 (327)
T ss_dssp             TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred             CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence            7888877422111  111111  1234588899998888777665 6766 4455544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.86  E-value=0.0092  Score=56.29  Aligned_cols=203  Identities=11%  Similarity=0.125  Sum_probs=123.4

Q ss_pred             cccccccCcEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~La-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      +.|.+-.+.+..++|+|++..|+ +...++.|...|.. ++.                                      
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v--------------------------------------   60 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL--------------------------------------   60 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE--------------------------------------
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE--------------------------------------
Confidence            45667777899999999877555 46667777777776 322                                      


Q ss_pred             ccccCCCceeec-cCccceEEEEEcCCCeE-EEEeCCCcEEEeccCCCee---eEeec-------CCCCeEEEEEeeCCC
Q 006909          254 FQIEESPLQELH-GHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQC---LNVFD-------HHNYVTCVQFNPIDD  321 (626)
Q Consensus       254 ~~~~~~~~~~~~-~h~~~V~~l~~s~~~~l-~s~s~d~~v~iwd~~~~~~---~~~~~-------~~~~v~~~~~~p~~~  321 (626)
                             +..+. +-....-.|++.+++.+ ++.-.++.+.++++.....   +....       .+.....++|+| .+
T Consensus        61 -------~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~  132 (255)
T 3qqz_A           61 -------IRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QD  132 (255)
T ss_dssp             -------EEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TT
T ss_pred             -------EEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CC
Confidence                   11111 11245677888888744 4544667888888754432   22221       234568999999 77


Q ss_pred             CEEEEEeCCCcEEEEeCCC----C--eEEEe-----ccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEE
Q 006909          322 NYFISGSIDGKVRIWGVCE----K--RVVDW-----ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKV  389 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~~----~--~~~~~-----~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~  389 (626)
                      +.|+++.......+|.+..    .  .+...     ......+.+++++|.. ++++.......+..+|..+.  ....+
T Consensus       133 ~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~  210 (255)
T 3qqz_A          133 HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEM  210 (255)
T ss_dssp             TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEE
T ss_pred             CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEE
Confidence            6666666555555555431    1  11110     0123357899999954 55556666778888988765  23333


Q ss_pred             eecccc---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909          390 DFHDRK---KTSGNKITGIQFSRDESQRIMITSEDSKLRILD  428 (626)
Q Consensus       390 ~~~~~~---~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd  428 (626)
                      .+....   ...-....+|+|.++| + |.+.++.+.++++.
T Consensus       211 ~L~~g~~~l~~~~~qpEGia~d~~G-~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          211 SLTKGSRGLSHNIKQAEGVAMDASG-N-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             ECSTTGGGCSSCCCSEEEEEECTTC-C-EEEEETTTEEEEEE
T ss_pred             EcCCccCCcccccCCCCeeEECCCC-C-EEEEcCCceEEEEE
Confidence            333211   0112467899999998 4 55557777777765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.79  E-value=0.0063  Score=59.22  Aligned_cols=204  Identities=8%  Similarity=0.092  Sum_probs=127.3

Q ss_pred             cCccceEEEEEcC-CCeEEEEe-CCCcEEEeccCCCeeeEe-ecC-------CCCeEEEEE---eeCCCCEEEEEeC---
Q 006909          266 GHKGDVLDLAWSN-SNYLLSCS-MDKTVRMWQVGCNQCLNV-FDH-------HNYVTCVQF---NPIDDNYFISGSI---  329 (626)
Q Consensus       266 ~h~~~V~~l~~s~-~~~l~s~s-~d~~v~iwd~~~~~~~~~-~~~-------~~~v~~~~~---~p~~~~~l~s~s~---  329 (626)
                      +....--+++|.+ ++.|+.++ ..++|..||...+..... +..       ...+..+.|   .| ++.++++...   
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~a   88 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKS   88 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccc
Confidence            3344455788987 45666555 789999999986644333 222       114689999   58 6767765432   


Q ss_pred             ----------CCcEEEEeCC---CCeEEEecc--------------CCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCC
Q 006909          330 ----------DGKVRIWGVC---EKRVVDWAD--------------VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASG  381 (626)
Q Consensus       330 ----------dg~v~iwd~~---~~~~~~~~~--------------~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~  381 (626)
                                +..|..||+.   +++.+....              .......++..++|+..++++.. +.|..++..+
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence                      5779999998   666543222              11347899999999999999988 8888887766


Q ss_pred             CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-eeeec--C---CCCCeEEE-EEcCCC
Q 006909          382 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGL--P---KSGSQMSA-SFTTTG  454 (626)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~--~---~~~~v~~~-~~sp~g  454 (626)
                      ....  .+.............+.|+++|+| ..|++....+.+..+|+..... .+...  +   .-.....+ ..-.+|
T Consensus       169 ~~~~--~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G  245 (334)
T 2p9w_A          169 KTVS--TFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN  245 (334)
T ss_dssp             CCEE--EEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred             CEEe--eeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence            5332  121111111222457899999998 5666666699999999875433 12111  1   11223333 333467


Q ss_pred             CE-EEEEeCCccEEEEECCC
Q 006909          455 KH-IISIGDDCRVYVWNYDE  473 (626)
Q Consensus       455 ~~-l~s~s~dg~I~iwd~~~  473 (626)
                      +. |++.+..+.+.+.+.+.
T Consensus       246 ~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          246 ESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEEEETTEEEEEECSST
T ss_pred             EEEEEEcCCCCEEEEECCCC
Confidence            77 55555566666666554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.78  E-value=0.0086  Score=64.35  Aligned_cols=58  Identities=12%  Similarity=0.000  Sum_probs=36.7

Q ss_pred             CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC
Q 006909          421 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  479 (626)
Q Consensus       421 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~  479 (626)
                      +|.|..||..+.....+.... .++..-.....+.+++.++.|+.++.||..++.....
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~  522 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence            578889998765544433211 1221111222467888899999999999999855433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.74  E-value=0.0014  Score=67.64  Aligned_cols=157  Identities=11%  Similarity=0.119  Sum_probs=102.2

Q ss_pred             CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-C----cEEEEEcCCCce
Q 006909          310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G----TCHFYKASGNDL  384 (626)
Q Consensus       310 ~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g----~i~i~d~~~~~~  384 (626)
                      ....++++|.++..|+.+...+.|+.+|+.++.+..+.........++++++|+.|+++... +    .+.+++......
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            45788998611334555554488999999988877766666778999999999977666542 2    344444433221


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-eeeecCCCCCeEEEEEcCCCCEEEEE-eC
Q 006909          385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISI-GD  462 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~-s~  462 (626)
                      ....+.  .     ......++++|++..++++-..++.|..++...... .+...........++|+|+|++|+.+ ..
T Consensus       218 ~~~~l~--~-----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          218 VITELT--K-----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             SEEEEE--E-----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             eeeeec--c-----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence            111111  1     145677889994336666666788999999764433 23222233567899999999955544 46


Q ss_pred             CccEEEEECCC
Q 006909          463 DCRVYVWNYDE  473 (626)
Q Consensus       463 dg~I~iwd~~~  473 (626)
                      .+.|+.++.+.
T Consensus       291 ~~~I~~~~~d~  301 (430)
T 3tc9_A          291 QHYILRSDYDW  301 (430)
T ss_dssp             TTEEEEEEEET
T ss_pred             CCEEEEEeCCc
Confidence            78899988764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.73  E-value=0.0097  Score=60.71  Aligned_cols=187  Identities=9%  Similarity=-0.042  Sum_probs=118.4

Q ss_pred             CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC----eEEEe-ccCCCCeE
Q 006909          280 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVDW-ADVRDVIS  354 (626)
Q Consensus       280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~----~~~~~-~~~~~~i~  354 (626)
                      .+|+.+. ...|+..++..............+..++|++.++.++++-...+.|+.+++.+.    ..... ........
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            3455444 367898999877666666666788999999834444444445678988988752    22222 22345678


Q ss_pred             EEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEeCCcc
Q 006909          355 AICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDV  432 (626)
Q Consensus       355 ~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~-dg~i~iwd~~~~  432 (626)
                      .+++.+.+..| ++-...+.|.+.++.+...... +. ..     ......|++.|.+..++.+-.. .+.|...++...
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l-~~-~~-----~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~  235 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FR-EN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  235 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE-EE-CS-----SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEE-Ee-CC-----CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence            89999854444 4555678899998876543221 11 11     2467899999976444444323 378888886632


Q ss_pred             eeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909          433 IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       433 ~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~  474 (626)
                      .........-.....+++++++..|+.+. ..+.|..+|++..
T Consensus       236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            22222222346789999998887777664 4578999998764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.72  E-value=0.0025  Score=65.86  Aligned_cols=156  Identities=9%  Similarity=0.012  Sum_probs=96.6

Q ss_pred             cceEEEEEcCC---CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC---C-cEEEEeCCCC
Q 006909          269 GDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---G-KVRIWGVCEK  341 (626)
Q Consensus       269 ~~V~~l~~s~~---~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g-~v~iwd~~~~  341 (626)
                      .....++|.|+   +.|+.+...+.|+.+|..++..............+++++ +++++++-...   . .+...+...+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence            34678999984   677776665899999998887776666566789999999 88854443321   1 1333333221


Q ss_pred             eE-EEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909          342 RV-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  419 (626)
Q Consensus       342 ~~-~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s  419 (626)
                      .. ......-.....++++| +|..+++-..++.|+.++..++...........     ......++|+|++..++++-.
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-----~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-----KGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----CSSCEEEEECTTSSEEEEEET
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----CCCcccEEEeCCCCEEEEEeC
Confidence            11 01111234456688999 666555555678899998875544122111111     123357999999843555666


Q ss_pred             CCCcEEEEeCC
Q 006909          420 EDSKLRILDGV  430 (626)
Q Consensus       420 ~dg~i~iwd~~  430 (626)
                      ..+.|+.++..
T Consensus       293 ~~~~I~~~~~d  303 (433)
T 4hw6_A          293 GKHCIYRVDYN  303 (433)
T ss_dssp             TTTEEEEEEBC
T ss_pred             CCCEEEEEeCC
Confidence            67899998743

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.66  E-value=0.0089  Score=64.25  Aligned_cols=148  Identities=15%  Similarity=0.094  Sum_probs=90.1

Q ss_pred             EEEEeCCCcEEEeccCCCeeeEeecCCC-----CeEE-EEEeeCCCCEEEEEe------CCCcEEEEeCCCCeEEEeccC
Q 006909          282 LLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDWADV  349 (626)
Q Consensus       282 l~s~s~d~~v~iwd~~~~~~~~~~~~~~-----~v~~-~~~~p~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~  349 (626)
                      ++.++.|+.|..+|..+|+.+.......     .+.+ ..+.  ++ .+++++      .++.|+.+|..+++++-....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            8888899999999999999887764222     2221 1121  34 555554      379999999999886532211


Q ss_pred             CCCe---------------------------------------EEEEEeeCCCEEEEEecCC----------------cE
Q 006909          350 RDVI---------------------------------------SAICYIPDGKGFIVGSITG----------------TC  374 (626)
Q Consensus       350 ~~~i---------------------------------------~~i~~sp~g~~l~~g~~dg----------------~i  374 (626)
                      ....                                       ..+++.+....+++++.++                .|
T Consensus       201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence            1110                                       1456777778888887653                79


Q ss_pred             EEEEcCCCceeeeEEeecccc----ccCCCCeEEEEEc-CCCC--cEEEEEeCCCcEEEEeCCccee
Q 006909          375 HFYKASGNDLKLEKVDFHDRK----KTSGNKITGIQFS-RDES--QRIMITSEDSKLRILDGVDVIH  434 (626)
Q Consensus       375 ~i~d~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~s-~~~~--~~l~~~s~dg~i~iwd~~~~~~  434 (626)
                      ..+|..+++..... ....+.    .....++. +... .+|.  ..++.++.+|.+.++|..+...
T Consensus       281 ~Ald~~TG~~~W~~-q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  345 (599)
T 1w6s_A          281 FGRDADTGEAKFGY-QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (599)
T ss_dssp             EEEETTTCCEEEEE-ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEeCCCCceeeEe-ecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence            99999988765432 111110    00111221 2222 3442  3577788999999999765433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.62  E-value=0.055  Score=60.01  Aligned_cols=200  Identities=12%  Similarity=-0.020  Sum_probs=122.1

Q ss_pred             cCccceEEEEEcC-CCeE-EEEeCCCcEEEeccCCC----eeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          266 GHKGDVLDLAWSN-SNYL-LSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       266 ~h~~~V~~l~~s~-~~~l-~s~s~d~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                      .....+..|+|.+ ++.| ++-...+.|+.+++...    .....+. .......|++.+..++++++-...+.|.+.++
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence            3445678899987 4544 45555678888888753    2223333 34566789998834456666666789999999


Q ss_pred             CCCeEEEec-cCCCCeEEEEEeeCCCEEEEEec-C-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          339 CEKRVVDWA-DVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       339 ~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~g~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      .+.....+. ..-.....|+++|.+.+|+.... . +.|...++.+.....  +...     .......|++.+.+..++
T Consensus       501 dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--lv~~-----~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          501 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE-----NIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECS-----SCSCEEEEEEETTTTEEE
T ss_pred             CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--EEeC-----CCCCceEEEEecCCCeEE
Confidence            876654443 23456889999998666666553 2 678888887654322  1111     125688999998764555


Q ss_pred             EEEeCCCcEEEEeCCcc-eeee-eecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCC
Q 006909          416 MITSEDSKLRILDGVDV-IHKF-KGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL  474 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~  474 (626)
                      ++-...+.|..+++... ...+ ..........++++.  +.+|+.+ ...+.|...+..++
T Consensus       574 waD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          574 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC
Confidence            55556678999986522 2222 221122345566663  3345444 45678888886655

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.61  E-value=0.016  Score=56.33  Aligned_cols=111  Identities=14%  Similarity=0.102  Sum_probs=82.6

Q ss_pred             ceEEEEE---cCCCeEEEEeC--------------CCcEEEeccC---CCeeeEeecC--------------CCCeEEEE
Q 006909          270 DVLDLAW---SNSNYLLSCSM--------------DKTVRMWQVG---CNQCLNVFDH--------------HNYVTCVQ  315 (626)
Q Consensus       270 ~V~~l~~---s~~~~l~s~s~--------------d~~v~iwd~~---~~~~~~~~~~--------------~~~v~~~~  315 (626)
                      .+..|.|   .|++.|+.+..              +..|..+|+.   +++.+.....              ......++
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva  143 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA  143 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence            3478899   57785554333              5779999999   7877665531              12478999


Q ss_pred             EeeCCCCEEEEEeCC-CcEEEEeCCCCeEEEecc------CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC
Q 006909          316 FNPIDDNYFISGSID-GKVRIWGVCEKRVVDWAD------VRDVISAICYIPDGKGFIVGSITGTCHFYKASG  381 (626)
Q Consensus       316 ~~p~~~~~l~s~s~d-g~v~iwd~~~~~~~~~~~------~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~  381 (626)
                      ..+ +|+..++++.. +.|...+........+..      .....+.|+++|+|+.|++....|.+..+|+..
T Consensus       144 vD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          144 QDR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             ECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             ECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            999 99999999988 888888887664443321      122367999999999999987799999999884

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.58  E-value=0.033  Score=54.65  Aligned_cols=184  Identities=11%  Similarity=0.179  Sum_probs=117.1

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeC---CCC---EEEEEeC---CCcEEEEeC--CCCeEEEecc-
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDN---YFISGSI---DGKVRIWGV--CEKRVVDWAD-  348 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~---~~~---~l~s~s~---dg~v~iwd~--~~~~~~~~~~-  348 (626)
                      .++.....+-+.+||+ +|+.+..+.. ..++.+..-|.   .+.   ++++...   +++|.+|++  .++.+..... 
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~  119 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP  119 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence            6777777788999999 7888887754 56777777660   121   2233333   578999966  4555444422 


Q ss_pred             -----CC-CCeEEEEE--eeC-CC-EEEEEecCCcEEEEEcCC---CceeeeEE-eeccccccCCCCeEEEEEcCCCCcE
Q 006909          349 -----VR-DVISAICY--IPD-GK-GFIVGSITGTCHFYKASG---NDLKLEKV-DFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       349 -----~~-~~i~~i~~--sp~-g~-~l~~g~~dg~i~i~d~~~---~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                           .. ..+..+|+  +|. ++ ++++...+|.+..|++..   +....+.+ .+.-     ...+..+...+.. ..
T Consensus       120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----gsq~EgcvvDd~~-g~  193 (355)
T 3amr_A          120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----NSQTEGMAADDEY-GR  193 (355)
T ss_dssp             TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----SSCEEEEEEETTT-TE
T ss_pred             ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----CCCcceEEEcCCC-Ce
Confidence                 11 55677887  664 43 688888899999999843   22222211 1111     2578888888875 58


Q ss_pred             EEEEeCCCcEEEEeCC--c--ceeeeee---cCCCCCeEEEEE--cCCCC-EEEEEe-CCccEEEEECC
Q 006909          415 IMITSEDSKLRILDGV--D--VIHKFKG---LPKSGSQMSASF--TTTGK-HIISIG-DDCRVYVWNYD  472 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~--~--~~~~~~~---~~~~~~v~~~~~--sp~g~-~l~s~s-~dg~I~iwd~~  472 (626)
                      |+++-++.-|..++..  .  ....+..   ..-...+..+++  .++++ ||++++ .+++..+||..
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            9999998778778744  1  1112221   112246788877  56666 666666 56799999986

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.56  E-value=0.056  Score=53.30  Aligned_cols=192  Identities=8%  Similarity=0.055  Sum_probs=102.7

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEE-EeccCCCeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC--CCCeE
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVR-MWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV--CEKRV  343 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~-iwd~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~--~~~~~  343 (626)
                      ..+..+.+.+++.++.++.++.|. -.|  .++.-...  .....+..+.+.| ++.+++.+...+..+-.|-  .+-+.
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW~~  198 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAWEP  198 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSCEE
T ss_pred             CCeEEEEEECCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCceeE
Confidence            346677777667555555566543 233  23222222  3455788999998 7777766654333333443  12122


Q ss_pred             EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909          344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK  423 (626)
Q Consensus       344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~  423 (626)
                      +. ......+..+.+.++++.+ +++.+|.+++.+...+.. .......  .......+..+.+.+++ ..++ ++.++.
T Consensus       199 ~~-~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t-W~~~~~~--~~~~~~~~~~v~~~~~~-~~~~-~g~~g~  271 (327)
T 2xbg_A          199 HN-RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN-WGELLSP--LRRNSVGFLDLAYRTPN-EVWL-AGGAGA  271 (327)
T ss_dssp             EE-CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE-ECCCBCT--TSSCCSCEEEEEESSSS-CEEE-EESTTC
T ss_pred             CC-CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe-eEeccCC--cccCCcceEEEEecCCC-EEEE-EeCCCe
Confidence            22 2345678889999988655 555678777664221111 1111110  00112458899998875 4444 445676


Q ss_pred             EEEE-eCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          424 LRIL-DGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       424 i~iw-d~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      |..- |....-.... .......+..+.|.++++ +++++.+|.|.-++-
T Consensus       272 i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          272 LLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             EEEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             EEEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            6332 2222112221 111235678888875554 666677898776653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.53  E-value=0.00082  Score=73.78  Aligned_cols=230  Identities=9%  Similarity=0.004  Sum_probs=121.7

Q ss_pred             CcEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          182 GCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      ....++++.++|++++.||. +..+.+||..+.....                                           
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~-------------------------------------------  279 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP-------------------------------------------  279 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE-------------------------------------------
T ss_pred             CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeE-------------------------------------------
Confidence            33445778899999999984 4579999987632211                                           


Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEe-CC-----CcEEEeccCCCeeeEee-----cCCCCeEEEEEeeCCCCEEEEEe
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCS-MD-----KTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d-----~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                      +..+...... .+++..+++ .++.|+ .+     ..+.+||..+++....-     .....-....+.. ++..++.|+
T Consensus       280 ~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg  357 (656)
T 1k3i_A          280 GPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGW  357 (656)
T ss_dssp             CCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEEC
T ss_pred             CCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEEC
Confidence            0011111111 233445555 666666 34     56999999877654431     0000000011112 455555555


Q ss_pred             CCC---------cEEEEeCCCCeEEEeccC----------CCCeEEEEEee-CCCEEEEEecCC-----------cEEEE
Q 006909          329 IDG---------KVRIWGVCEKRVVDWADV----------RDVISAICYIP-DGKGFIVGSITG-----------TCHFY  377 (626)
Q Consensus       329 ~dg---------~v~iwd~~~~~~~~~~~~----------~~~i~~i~~sp-~g~~l~~g~~dg-----------~i~i~  377 (626)
                      .+|         .+..||..+..-......          ...-.++.|.. +++.+++|+.++           .+.+|
T Consensus       358 ~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~y  437 (656)
T 1k3i_A          358 KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLG  437 (656)
T ss_dssp             GGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECC
T ss_pred             CCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcC
Confidence            443         467888876553321111          11234444543 677788887543           57777


Q ss_pred             EcCCCceeeeE-EeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----------CcEEEEeCCcceeeeee--cCCCC
Q 006909          378 KASGNDLKLEK-VDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----------SKLRILDGVDVIHKFKG--LPKSG  443 (626)
Q Consensus       378 d~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~--~~~~~  443 (626)
                      |..+....... -.+..     ...-.++...|++ ++++.|+.+           ..+.+||..+..-....  .....
T Consensus       438 d~~~~~W~~~~~~~mp~-----~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~  511 (656)
T 1k3i_A          438 EPGTSPNTVFASNGLYF-----ARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV  511 (656)
T ss_dssp             STTSCCEEEECTTCCSS-----CCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC
T ss_pred             CCCCCCeeEEccCCCCC-----CcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccc
Confidence            77665432111 01111     1122345567787 677777654           56899997643322111  11222


Q ss_pred             CeEEEEEcCCCCEEEEEeC
Q 006909          444 SQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       444 ~v~~~~~sp~g~~l~s~s~  462 (626)
                      ....+.+.|+|+.++.|+.
T Consensus       512 ~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          512 YHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TTEEEEECTTSCEEEEECC
T ss_pred             cccHhhcCCCcEEEecCCC
Confidence            3344566799999999985

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.47  E-value=0.064  Score=57.97  Aligned_cols=199  Identities=7%  Similarity=-0.085  Sum_probs=116.8

Q ss_pred             ccceEEEEEcCC-CeEEEE-eCCCcEEEeccCCCee-eEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909          268 KGDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGCNQC-LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  343 (626)
Q Consensus       268 ~~~V~~l~~s~~-~~l~s~-s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~  343 (626)
                      -..+..++|++. +.|+.+ ...+.|..+++..... ...+. .-.....+++.+..++++++-...+.|.+.++.+...
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            345778999874 555544 4467788888875532 22232 2257889999984445555555678999999987654


Q ss_pred             EEec-cCCCCeEEEEEeeCCCEEEEEec--CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909          344 VDWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  420 (626)
Q Consensus       344 ~~~~-~~~~~i~~i~~sp~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~  420 (626)
                      ..+. ..-.....|++.|.+..|+....  .+.|...++.+......  ...     ......+|++++++..++++-..
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l--~~~-----~~~~P~Glald~~~~~LY~aD~~  191 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII--INS-----EIYWPNGLTLDYEEQKLYWADAK  191 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--ECS-----SCSSEEEEEEETTTTEEEEEETT
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE--EeC-----CCCCCcEEEEEccCCEEEEEeCC
Confidence            3332 33455778999997666666553  35677777765433211  111     12567899999976555566566


Q ss_pred             CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          421 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       421 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+.|..+|..................++++..+ ...++-...+.|...|..++
T Consensus       192 ~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             TCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred             CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence            788999886532211111111223346676554 33334345678888888665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.41  E-value=0.032  Score=54.81  Aligned_cols=184  Identities=10%  Similarity=-0.038  Sum_probs=112.9

Q ss_pred             eEEEEeCCCcEEEeccCCCe--eeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE--EEeccCCCCeEEE
Q 006909          281 YLLSCSMDKTVRMWQVGCNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAI  356 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~i~~i  356 (626)
                      +|+.+. ...|+..++....  ....+.....+.+++|++.++.++.+-...+.|..+++.++..  ......-.....+
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl   84 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   84 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence            344333 3578888887653  2222233345678999984455555555667899999876532  1122222456678


Q ss_pred             EEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEeCCc-c
Q 006909          357 CYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGVD-V  432 (626)
Q Consensus       357 ~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s--~dg~i~iwd~~~-~  432 (626)
                      ++.+.+..| ++-...+.|.++++.+.....  +...     .......+++.|.+. .|+.+.  ..+.|...+... .
T Consensus        85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~~~-----~~~~P~giavdp~~g-~ly~td~~~~~~I~r~~~dG~~  156 (318)
T 3sov_A           85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKV--LFWQ-----ELDQPRAIALDPSSG-FMYWTDWGEVPKIERAGMDGSS  156 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECS-----SCSSEEEEEEEGGGT-EEEEEECSSSCEEEEEETTSCS
T ss_pred             EEEcCCCeEEEEECCCCEEEEEECCCCcEEE--EEeC-----CCCCccEEEEeCCCC-EEEEEecCCCCEEEEEEcCCCC
Confidence            888755444 444566789999987654321  1111     125678999998753 444444  357888888653 2


Q ss_pred             eeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909          433 IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       433 ~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~  474 (626)
                      ...+. ...-.....++++|++..|+.+. ..+.|..++++..
T Consensus       157 ~~~~~-~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          157 RFIII-NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             CEEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eEEEE-ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            22221 12345678999999777766654 4678999998753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.38  E-value=0.062  Score=53.58  Aligned_cols=226  Identities=15%  Similarity=0.127  Sum_probs=117.8

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      ..-+.|+|.|+|+++++ ..+|.|++++  ++......                                      ..+ 
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~--------------------------------------~~~-   68 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYA--------------------------------------ELS-   68 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEE--------------------------------------ECC-
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEee--------------------------------------cce-
Confidence            35779999999996665 5669898888  32211000                                      000 


Q ss_pred             eeeccCccceEEEEEcCC----CeEEEEeC-C-----CcEEEeccCCCe-----ee-EeecC----CCCeEEEEEeeCCC
Q 006909          262 QELHGHKGDVLDLAWSNS----NYLLSCSM-D-----KTVRMWQVGCNQ-----CL-NVFDH----HNYVTCVQFNPIDD  321 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~----~~l~s~s~-d-----~~v~iwd~~~~~-----~~-~~~~~----~~~v~~~~~~p~~~  321 (626)
                       .+.........|+++|+    +.|+.+.. .     ..|..++...+.     .+ ..+..    ......++|.| ++
T Consensus        69 -v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG  146 (352)
T 2ism_A           69 -VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DG  146 (352)
T ss_dssp             -CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TS
T ss_pred             -EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CC
Confidence             11112346788999997    55544433 2     567778776432     11 11221    12346899999 88


Q ss_pred             CEEEEEeC-------------CCcEEEEeCCCC-------------e-EEEeccCCCCeEEEEEee-CCCEEEEEecCCc
Q 006909          322 NYFISGSI-------------DGKVRIWGVCEK-------------R-VVDWADVRDVISAICYIP-DGKGFIVGSITGT  373 (626)
Q Consensus       322 ~~l~s~s~-------------dg~v~iwd~~~~-------------~-~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~  373 (626)
                      .++++.+.             .|.|.-++....             . .+...++ .....++|+| +|..+++-.....
T Consensus       147 ~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~  225 (352)
T 2ism_A          147 MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSG  225 (352)
T ss_dssp             CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC--
T ss_pred             CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCC
Confidence            77766432             145666665431             0 0111112 2356788999 5654444332222


Q ss_pred             E------EEEEcCCCce---------------eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc
Q 006909          374 C------HFYKASGNDL---------------KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV  432 (626)
Q Consensus       374 i------~i~d~~~~~~---------------~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~  432 (626)
                      +      .+.-+..+..               .......     .+......++|. +| .++++....+.|...+....
T Consensus       226 ~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-----~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~  298 (352)
T 2ism_A          226 EQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-----PQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGE  298 (352)
T ss_dssp             ----CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-----TTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEE
T ss_pred             CCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-----CCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCC
Confidence            1      1222222110               0000000     112356778884 44 56666666677877765421


Q ss_pred             --------eeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909          433 --------IHKFKGLPKSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       433 --------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s  461 (626)
                              ...+.  .....+..+++.|||.+.++..
T Consensus       299 ~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          299 RGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred             Ccceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence                    11121  1345788999999998776654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.37  E-value=0.039  Score=54.17  Aligned_cols=141  Identities=13%  Similarity=0.159  Sum_probs=90.1

Q ss_pred             CCcEEEecc--CCCeeeEeecC-------C-CCeEEEEE--eeCCCC-EEEEEeCCCcEEEEeCC-------CCeEEEec
Q 006909          288 DKTVRMWQV--GCNQCLNVFDH-------H-NYVTCVQF--NPIDDN-YFISGSIDGKVRIWGVC-------EKRVVDWA  347 (626)
Q Consensus       288 d~~v~iwd~--~~~~~~~~~~~-------~-~~v~~~~~--~p~~~~-~l~s~s~dg~v~iwd~~-------~~~~~~~~  347 (626)
                      +++|.+|++  .++. +..+..       . ..+..+++  +|..+. ++++...+|.+..|++.       +.+++...
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            578999976  3443 444421       1 45666777  663444 67778888999999882       33556666


Q ss_pred             cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee-eeEEeeccccccCCCCeEEEEE--cCCCCcEEEEEe-CCCc
Q 006909          348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF--SRDESQRIMITS-EDSK  423 (626)
Q Consensus       348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~--s~~~~~~l~~~s-~dg~  423 (626)
                      .....+..+.+.+....|+++-.+..|..|+....... ...+.... .......+..|++  .+++..+|++++ .+++
T Consensus       177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            67788999999998899999999977777775422210 11111111 1111246888888  455533566665 5679


Q ss_pred             EEEEeCC
Q 006909          424 LRILDGV  430 (626)
Q Consensus       424 i~iwd~~  430 (626)
                      ..+||..
T Consensus       256 ~~Vydr~  262 (355)
T 3amr_A          256 YAIYDRQ  262 (355)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9999975

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.35  E-value=0.038  Score=61.30  Aligned_cols=187  Identities=9%  Similarity=-0.047  Sum_probs=118.1

Q ss_pred             CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC----eEEE-eccCCCCeE
Q 006909          280 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVD-WADVRDVIS  354 (626)
Q Consensus       280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~----~~~~-~~~~~~~i~  354 (626)
                      .+|+.+. ...|+..++..............+..++|.+.++.++++-...+.|+.+++...    .... ....-....
T Consensus       396 p~Ll~an-~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          396 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             CEEEEEC-BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             ccccccc-ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            3444433 356888888877666666666778899999844445555555678988888753    1222 222345567


Q ss_pred             EEEEeeCCCEEEE-EecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEeCCcc
Q 006909          355 AICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDV  432 (626)
Q Consensus       355 ~i~~sp~g~~l~~-g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~iwd~~~~  432 (626)
                      .|++.+.+..|+. -...+.|.+.++.+.....  +....     ......|++.|.++.++++-... +.|.+.++...
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~--l~~~~-----l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFREN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEE--EEECT-----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEE--EEeCC-----CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence            8999987755554 4556899999988654322  11111     24688999999754444443333 68888887643


Q ss_pred             eeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909          433 IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       433 ~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~  474 (626)
                      ...............|++++.+..|+.+. ..+.|...+++..
T Consensus       548 ~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          548 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            33222222446789999998777777664 4568999998765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.34  E-value=0.0012  Score=72.77  Aligned_cols=198  Identities=12%  Similarity=-0.027  Sum_probs=117.2

Q ss_pred             cceEEEEEcCC-CeEEEE-eCCCcEEEeccCC----CeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          269 GDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       269 ~~V~~l~~s~~-~~l~s~-s~d~~v~iwd~~~----~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                      ..+..|+|.+. +.|+.+ ...+.|+.+++.+    ......+. .......|++.+..++++++-...+.|.++++.+.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            45668889874 455544 4557899888875    22222221 12235678887635556665556788999998876


Q ss_pred             eEEEeccC-CCCeEEEEEeeCCCEEEEEec-C-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909          342 RVVDWADV-RDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  418 (626)
Q Consensus       342 ~~~~~~~~-~~~i~~i~~sp~g~~l~~g~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~  418 (626)
                      ....+... ......|+++|.+.+|+.+.. . +.|..+++.+.....  +. ..    .......|+|+|++..++++-
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~-~~----~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV-TE----NIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ES-CS----SCSSCCCEEECTTTCCEEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EE-eC----CCCCccEEEEeccCCEEEEEe
Confidence            65544332 345678899997665555443 2 678777776543211  11 11    124567899999875666666


Q ss_pred             eCCCcEEEEeCCcc-eeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          419 SEDSKLRILDGVDV-IHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       419 s~dg~i~iwd~~~~-~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +..+.|.+++.... ...+.. ........++++..+ .++++....+.|..++..++
T Consensus       559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred             cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence            77789999997532 222221 112233445566443 34445556688999987655

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.29  E-value=0.29  Score=52.88  Aligned_cols=191  Identities=5%  Similarity=-0.092  Sum_probs=101.2

Q ss_pred             CcEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcceeeeecCCC-C--CccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          182 GCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDG-G--FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       182 ~~V~~l~fspdg~~La-tgs~Dg~i~iwd~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      ..+..|+|++.+..|. +-..++.|..+++.............. .  .......+.+.+.......+.+..      ..
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~------~d  110 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK------LD  110 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE------TT
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe------cC
Confidence            4578999998666554 545678888888875433222211101 1  111112233333222222221111      12


Q ss_pred             CCCceeec-cCccceEEEEEcC-CCeEEEEeC--CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCCCc
Q 006909          258 ESPLQELH-GHKGDVLDLAWSN-SNYLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGK  332 (626)
Q Consensus       258 ~~~~~~~~-~h~~~V~~l~~s~-~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~  332 (626)
                      +.....+. ..-.....|++.| .|.|+.+..  .+.|...++...........-.....+++++ +++.|+.+ ...+.
T Consensus       111 G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~-~~~~LY~aD~~~~~  189 (628)
T 4a0p_A          111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDY-AKRRLYWTDLDTNL  189 (628)
T ss_dssp             STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEET-TTTEEEEEETTTTE
T ss_pred             CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEcc-ccCEEEEEECCCCE
Confidence            22222332 3335678999998 466665542  4677777776554444444556789999998 65655555 44578


Q ss_pred             EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcC
Q 006909          333 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  380 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~  380 (626)
                      |..+|+.+.....+...-.....+++.. +..+++-...+.|...|..
T Consensus       190 I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          190 IESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT  236 (628)
T ss_dssp             EEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             EEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence            9999987644332222233445666643 3333333345666666643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.27  E-value=0.012  Score=63.09  Aligned_cols=85  Identities=15%  Similarity=0.066  Sum_probs=52.6

Q ss_pred             CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      +|.|..||+.+++.+-.......+..-.....+..+++|+.||.++.||.++++.... ......     ....-+.|..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~-~~~~~g-----~~a~P~~y~~  538 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK-FQTGSG-----IVSPPITWEQ  538 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSSC-----CCSCCEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE-ecCCCC-----cccCceEEEE
Confidence            5789999999988763333222322222233566888899999999999999887544 222211     1112255667


Q ss_pred             CCCcEEEEEeC
Q 006909          410 DESQRIMITSE  420 (626)
Q Consensus       410 ~~~~~l~~~s~  420 (626)
                      +|.+++++.+.
T Consensus       539 ~G~qYv~~~~G  549 (582)
T 1flg_A          539 DGEQYLGVTVG  549 (582)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEcc
Confidence            77566666554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.25  E-value=0.061  Score=53.64  Aligned_cols=227  Identities=12%  Similarity=0.042  Sum_probs=116.8

Q ss_pred             CccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeee--Eeec----CCCCeEEEEEeeCC---CCEEEEEeC-C-----C
Q 006909          267 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL--NVFD----HHNYVTCVQFNPID---DNYFISGSI-D-----G  331 (626)
Q Consensus       267 h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~----~~~~v~~~~~~p~~---~~~l~s~s~-d-----g  331 (626)
                      .-.....++|.|+|.|+.+..++.|.+++  .++..  ..+.    .......++++| +   +..|+.+.. .     +
T Consensus        29 ~l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           29 GLEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CCSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCcc
Confidence            34456799999999777777889999998  34322  1111    234688999999 6   444444433 2     5


Q ss_pred             cEEEEeCCCCe------EEE-ec---cCCCCeEEEEEeeCCCEEEEEec-------------CCcEEEEEcCCCce----
Q 006909          332 KVRIWGVCEKR------VVD-WA---DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL----  384 (626)
Q Consensus       332 ~v~iwd~~~~~------~~~-~~---~~~~~i~~i~~sp~g~~l~~g~~-------------dg~i~i~d~~~~~~----  384 (626)
                      .|..++...+.      +.. +.   ........++|.|+|.+.++.+.             .|.|.-++..+.-.    
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np  185 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP  185 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence            67788776432      111 11   11123468999999965554322             14555555543100    


Q ss_pred             -------eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc--------EEEEeCCc---------------cee
Q 006909          385 -------KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--------LRILDGVD---------------VIH  434 (626)
Q Consensus       385 -------~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~--------i~iwd~~~---------------~~~  434 (626)
                             ..+.+. .+     ......++|+|+...++++-...+.        |.+.....               ...
T Consensus       186 f~~~~~~~~~i~a-~G-----~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          186 FLGRRGARPEVYS-LG-----HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             TTTCTTSCTTEEE-EC-----CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             ccCCCCCCccEEE-Ec-----CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                   000111 11     1336678999943345554433333        44433111               000


Q ss_pred             eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeee-ccCCcEEEEecCCCCcc
Q 006909          435 KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF-FSEGVSVAVQWPGIGTE  508 (626)
Q Consensus       435 ~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~g~~~av~~s~~~~~  508 (626)
                      .............++| .+|.++++.-..+.|...+++.......     ......+ ..-+....+++.|+|..
T Consensus       260 p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~-----~~~~~~~~~~~~rp~~v~~~pdG~l  328 (352)
T 2ism_A          260 PLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR-----VLRVETALSGFGRLREVQVGPDGAL  328 (352)
T ss_dssp             CSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE-----EEEEEEEEESSCCEEEEEECTTSCE
T ss_pred             CeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee-----ecchheecccCCCeeEEEECCCCcE
Confidence            1111112334567777 4676666665667777777764311000     0000111 22355667777787743

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.20  E-value=0.36  Score=52.08  Aligned_cols=198  Identities=8%  Similarity=-0.041  Sum_probs=102.5

Q ss_pred             cceEEEEEcCC-CeEEEE-eCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909          269 GDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  345 (626)
Q Consensus       269 ~~V~~l~~s~~-~~l~s~-s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~  345 (626)
                      ...+.|++.++ +.|+.+ ...+.|...|+.......... ......++++.. + ..+++-...+.|...|..+++...
T Consensus       171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~-~-~ly~td~~~~~V~~~d~~tg~~~~  248 (619)
T 3s94_A          171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-D-ILYWTDWSTHSILACNKYTGEGLR  248 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS-S-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred             CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC-C-EEEEecCCCCEEEEEECCCCcccE
Confidence            45688999975 455544 456788888887543332222 122234666654 3 344444456778888876653211


Q ss_pred             ecc------------CC--------------CCeEEEEE-----------eeCC--------------CEEEEEecCCcE
Q 006909          346 WAD------------VR--------------DVISAICY-----------IPDG--------------KGFIVGSITGTC  374 (626)
Q Consensus       346 ~~~------------~~--------------~~i~~i~~-----------sp~g--------------~~l~~g~~dg~i  374 (626)
                      ...            |.              +....+|+           .|.|              ..++.-+..+.|
T Consensus       249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i  328 (619)
T 3s94_A          249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDL  328 (619)
T ss_dssp             ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCE
T ss_pred             EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccce
Confidence            000            00              00111111           1221              112222233455


Q ss_pred             EEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCC
Q 006909          375 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTT  453 (626)
Q Consensus       375 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~  453 (626)
                      +..++.........+...+     -..+..++|.+.+..++++-...+.|+.++.... ...+. ......+..+++.+.
T Consensus       329 ~~i~l~~~~~~~~~~~~~~-----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~  402 (619)
T 3s94_A          329 RRISLDTPDFTDIVLQLED-----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWV  402 (619)
T ss_dssp             EEEESSSTTCCCEECCCSC-----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETT
T ss_pred             EEEecCCCccceeEEeccc-----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEecc
Confidence            6666654432111111111     2457889999865455555556788999986532 22222 223356778999875


Q ss_pred             CCEEE-EEeCCccEEEEECCCC
Q 006909          454 GKHII-SIGDDCRVYVWNYDEL  474 (626)
Q Consensus       454 g~~l~-s~s~dg~I~iwd~~~~  474 (626)
                      ++.|+ +-+..+.|.+.++++.
T Consensus       403 ~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          403 ARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSC
T ss_pred             cCcEEEEeCCCCcEEEEeCCCC
Confidence            55444 4455789999998865

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.17  E-value=0.32  Score=52.58  Aligned_cols=195  Identities=7%  Similarity=-0.020  Sum_probs=124.6

Q ss_pred             cceEEEEEcCC-CeEE-EEeCCCcEEEeccCCCeeeEeecC-CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909          269 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  345 (626)
Q Consensus       269 ~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~  345 (626)
                      ..+..|+|++. +.|+ +-..++.|..+++........+.. ......+++.+..++++++-...+.|.+.++.+.....
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            45788999975 4544 555678899998876544443432 24577889987455556665667889999987654333


Q ss_pred             ec-cCCCCeEEEEEeeCCCEEEEEec--CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909          346 WA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  422 (626)
Q Consensus       346 ~~-~~~~~i~~i~~sp~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg  422 (626)
                      +. ..-.....|+++|....|+....  .+.|...++.+...... .  ..     ......|++++++..++++-...+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l-~--~~-----~~~P~GlalD~~~~~LY~aD~~~~  188 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL-V--PN-----VGRANGLTIDYAKRRLYWTDLDTN  188 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-E--CS-----CSSEEEEEEETTTTEEEEEETTTT
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE-E--CC-----CCCcceEEEccccCEEEEEECCCC
Confidence            22 33456789999996556666553  56787788776543221 1  11     257889999998655555656678


Q ss_pred             cEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          423 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       423 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .|..+|.... ...+..  ......++++.. +...++-...+.|...|..++
T Consensus       189 ~I~~~d~dG~~~~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          189 LIESSNMLGLNREVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             EEEEEETTSCSCEEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEcCCCCceEEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence            9999996532 222222  234556777764 444444445788888886555

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.14  E-value=0.014  Score=60.53  Aligned_cols=157  Identities=13%  Similarity=0.131  Sum_probs=101.1

Q ss_pred             CeEEEEEeeC-CCCEEEEEeCCCcEEEEeCCCCeEEEeccCC----CCeEEEEE-------eeCCCEEEEEecCC-----
Q 006909          310 YVTCVQFNPI-DDNYFISGSIDGKVRIWGVCEKRVVDWADVR----DVISAICY-------IPDGKGFIVGSITG-----  372 (626)
Q Consensus       310 ~v~~~~~~p~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~i~~i~~-------sp~g~~l~~g~~dg-----  372 (626)
                      ....|+|.|. .++++++-...+.|++.|+.++.+..+....    .....++|       +++|+.|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999982 3455555554577999999998887654432    35889999       99999777776654     


Q ss_pred             --cEEEEEcCC-Cceee----eEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-------ccee----
Q 006909          373 --TCHFYKASG-NDLKL----EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-------DVIH----  434 (626)
Q Consensus       373 --~i~i~d~~~-~~~~~----~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-------~~~~----  434 (626)
                        .+.+++... +....    ..+. .      ......++++|++..++++-..++.|..+|..       +...    
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~------~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIA-A------YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEE-E------ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             CceEEEEecCCCCceeecccceeec-c------CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence              255665333 12210    1111 1      13456788999665667777788899999975       2211    


Q ss_pred             ---------eeeecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCC
Q 006909          435 ---------KFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDE  473 (626)
Q Consensus       435 ---------~~~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~  473 (626)
                               .+...........++|+|+|++|+.+ +..+.|+.++.+.
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence                     22222234567899999999965554 4567888877654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.05  E-value=0.3  Score=48.61  Aligned_cols=228  Identities=14%  Similarity=0.069  Sum_probs=120.6

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      ...+.|+|.|+|+++++ ..+|.|++++. ++. ..  +.                                    ..+ 
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~--~~------------------------------------~~~-   66 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KL--VA------------------------------------SFD-   66 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EE--EE------------------------------------ECC-
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eE--ee------------------------------------ccc-
Confidence            45789999999985555 55688888863 321 00  00                                    000 


Q ss_pred             eeeccCccceEEEEEcCC----CeEEEEeC----C----CcEEEeccCCC-------eee-Eeec--CCCCeEEEEEeeC
Q 006909          262 QELHGHKGDVLDLAWSNS----NYLLSCSM----D----KTVRMWQVGCN-------QCL-NVFD--HHNYVTCVQFNPI  319 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~----~~l~s~s~----d----~~v~iwd~~~~-------~~~-~~~~--~~~~v~~~~~~p~  319 (626)
                       ...........|+++|+    +.|+.+..    +    ..|..|+....       +.+ ..+.  .......++|.| 
T Consensus        67 -v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-  144 (354)
T 3a9g_A           67 -VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-  144 (354)
T ss_dssp             -CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-
T ss_pred             -eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-
Confidence             01112345788999986    55554433    3    56777776543       111 1122  112346799999 


Q ss_pred             CCCEEEEEeC-------------CCcEEEEeCCCC---------eEEEeccCCCCeEEEEEee-CCCEEEEEecCC---c
Q 006909          320 DDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIP-DGKGFIVGSITG---T  373 (626)
Q Consensus       320 ~~~~l~s~s~-------------dg~v~iwd~~~~---------~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg---~  373 (626)
                      ++.++++.+.             .|.|.-++....         ..+...++. ....++|+| +|+.+++-...+   .
T Consensus       145 DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~de  223 (354)
T 3a9g_A          145 DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDE  223 (354)
T ss_dssp             TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCE
T ss_pred             CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcE
Confidence            8887776432             245655555432         011112222 345789999 565444432221   2


Q ss_pred             EEEEEcCCCce---------------eeeEEeeccccccCCCCeEEEEEc-------CCCCcEEEEEeCCCcEEEEeCCc
Q 006909          374 CHFYKASGNDL---------------KLEKVDFHDRKKTSGNKITGIQFS-------RDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       374 i~i~d~~~~~~---------------~~~~~~~~~~~~~~~~~i~~l~~s-------~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      |.+..  .+..               ......+    .........++|.       .+| .++++....+.|...+...
T Consensus       224 i~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~----~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          224 VNIIL--KGGNYGWPLATGKAGRGEFVDPVIDT----GSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             EEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC----TTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECG
T ss_pred             EEEec--CCCcCCCCcccCCCCCCCCcCCEeec----CCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECC
Confidence            33222  1110               0000011    0112567888884       455 5666666677888888653


Q ss_pred             c--ee-eeeec-CCCCCeEEEEEcCCCCEEEEEe
Q 006909          432 V--IH-KFKGL-PKSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       432 ~--~~-~~~~~-~~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      .  .. ..... .....+..+++.|||.+.++..
T Consensus       297 ~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          297 NMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             GGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            2  11 11111 1245788999999997766654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.00  E-value=0.33  Score=48.31  Aligned_cols=198  Identities=12%  Similarity=0.088  Sum_probs=108.0

Q ss_pred             ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCe-eeEeec----CCCCeEEEEEeeCC---CCEEEEEeC----C----C
Q 006909          268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVFD----HHNYVTCVQFNPID---DNYFISGSI----D----G  331 (626)
Q Consensus       268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~----~~~~v~~~~~~p~~---~~~l~s~s~----d----g  331 (626)
                      -.....|+|.|++.|+.+..++.|++++. +++ .+..+.    .......|+++| +   +..|+.+..    +    +
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence            45678999999998888888899999974 444 222211    234688999999 6   444444332    2    5


Q ss_pred             cEEEEeCCCC--e------EEE-ec-cCCCCeEEEEEeeCCCEEEEEec-------------CCcEEEEEcCCCce----
Q 006909          332 KVRIWGVCEK--R------VVD-WA-DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL----  384 (626)
Q Consensus       332 ~v~iwd~~~~--~------~~~-~~-~~~~~i~~i~~sp~g~~l~~g~~-------------dg~i~i~d~~~~~~----  384 (626)
                      .|..|+....  .      ++. +. ........+.|.|+|.+.++.+.             .|.|.-++..+.-.    
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777776554  1      111 11 11123467999999976555322             14455555443200    


Q ss_pred             --eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC---cEEEEeCCc---------------ceee-eeecCCCC
Q 006909          385 --KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS---KLRILDGVD---------------VIHK-FKGLPKSG  443 (626)
Q Consensus       385 --~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg---~i~iwd~~~---------------~~~~-~~~~~~~~  443 (626)
                        ..+.+ ..+.     .....++|+|+...++++-...+   .|.+.....               .... +.......
T Consensus       186 f~~~~i~-a~G~-----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~  259 (354)
T 3a9g_A          186 FPNSPIW-SYGH-----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW  259 (354)
T ss_dssp             STTCCEE-EECC-----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred             CCCCcEE-EEcc-----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence              00111 1111     34568999994324444433222   244433111               0011 11101234


Q ss_pred             CeEEEEEc-------CCCCEEEEEeCCccEEEEECCC
Q 006909          444 SQMSASFT-------TTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       444 ~v~~~~~s-------p~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      .+..++|.       .+|.++++.-..+.|...+++.
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            57788883       5677777766677888888874

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.96  E-value=0.38  Score=48.33  Aligned_cols=204  Identities=12%  Similarity=0.142  Sum_probs=130.7

Q ss_pred             ccceEEEEEcCCCeEEEEeCCCcEEEeccCC-CeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeC-------CCcEE
Q 006909          268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-------DGKVR  334 (626)
Q Consensus       268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~-------dg~v~  334 (626)
                      ...|.-=.|-.+..|+-.+. ..|.-|++.. ..+.+.|.     ....|..-..++ +.+.++..+.       .|.+.
T Consensus       105 ~e~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQ  182 (494)
T 1bpo_A          105 TDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQ  182 (494)
T ss_dssp             SSCCCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEE
Confidence            34666667766665555443 5799999964 35666664     234566777777 7776654432       36789


Q ss_pred             EEeCCCCeEEEeccCCCCeEEEEEeeC---CCEEEEEec---CCcEEEEEcCCC---c--eeeeEEeeccccccCCCCeE
Q 006909          335 IWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSI---TGTCHFYKASGN---D--LKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       335 iwd~~~~~~~~~~~~~~~i~~i~~sp~---g~~l~~g~~---dg~i~i~d~~~~---~--~~~~~~~~~~~~~~~~~~i~  403 (626)
                      +|..+.+....+.+|......+.+.-+   .+.++.+..   .+.+++.++...   .  .........-......+-..
T Consensus       183 LYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv  262 (494)
T 1bpo_A          183 LYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (494)
T ss_dssp             EEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred             EeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence            999988777777777554433332211   123343433   278999998543   1  11112222222223345667


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++..++.. ..+..-+.-|.|++||+.+....+...-....|...+.+....-++.....|.|.--.++..
T Consensus       263 amqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          263 AMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             EEEecccC-CEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            88888875 58889999999999999998888887666777766666655556666667888877777664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.89  E-value=0.41  Score=47.54  Aligned_cols=67  Identities=7%  Similarity=0.085  Sum_probs=40.4

Q ss_pred             CCeEEEEEcC-------CCCcEEEEEeCCCcEEEEeCCcc--eeeeeec-CCCCCeEEEEEcCCCCEEEEEe-CCccEE
Q 006909          400 NKITGIQFSR-------DESQRIMITSEDSKLRILDGVDV--IHKFKGL-PKSGSQMSASFTTTGKHIISIG-DDCRVY  467 (626)
Q Consensus       400 ~~i~~l~~s~-------~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s-~dg~I~  467 (626)
                      ..+..+.|..       +| .++++....+.|...++...  ....... .....+..+++.|||.+.++.. .+|.|+
T Consensus       271 ~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~  348 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELL  348 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred             cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEE
Confidence            4577888864       34 56666667778877775432  1111111 1235789999999998666543 345443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.87  E-value=0.087  Score=52.81  Aligned_cols=148  Identities=11%  Similarity=0.185  Sum_probs=92.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCe---EEEecc--CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee---------
Q 006909          320 DDNYFISGSIDGKVRIWGVCEKR---VVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK---------  385 (626)
Q Consensus       320 ~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~--~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~---------  385 (626)
                      ++..++.+- ++.||.-++..+.   ......  .-..|..+..+|+|++||+.+ +..|.|..+..+...         
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            555555554 4678877776332   222221  123678899999999999885 458888888732211         


Q ss_pred             --eeEEeeccccccCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEeCCc----ce------eeeeecCCCCCeEEEEEc
Q 006909          386 --LEKVDFHDRKKTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVD----VI------HKFKGLPKSGSQMSASFT  451 (626)
Q Consensus       386 --~~~~~~~~~~~~~~~~i~~l~~s~~~~--~~l~~~s~dg~i~iwd~~~----~~------~~~~~~~~~~~v~~~~~s  451 (626)
                        ...............+|..+.|+|-+.  ..|++-..|+.|++||+..    +.      ..+........|.+++|.
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg  188 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS  188 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence              112222211111347899999999753  3899999999999999763    11      111111223678899999


Q ss_pred             CCCCEEEEEe--CCccEEEE
Q 006909          452 TTGKHIISIG--DDCRVYVW  469 (626)
Q Consensus       452 p~g~~l~s~s--~dg~I~iw  469 (626)
                      +++-.|...+  ..|-|+-.
T Consensus       189 ~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          189 KDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TTSSCEEEEECTTSCEEEEE
T ss_pred             CCCcEEEEEecCCCCCEEEE
Confidence            8876666644  66777653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.80  E-value=0.0055  Score=67.45  Aligned_cols=179  Identities=8%  Similarity=-0.056  Sum_probs=105.6

Q ss_pred             CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCCCcEEEEeCCC----CeEEEec-cCCCCeEEEEEeeC
Q 006909          288 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPD  361 (626)
Q Consensus       288 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~v~iwd~~~----~~~~~~~-~~~~~i~~i~~sp~  361 (626)
                      .+.|+..++.+......+.....+..++|.+ ..+.|+.+ ...+.|+.+++.+    ....... ........|++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            3578888888776655555455677899998 55555544 4457899999875    2222222 11233556888865


Q ss_pred             CCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEeCCcceeeeeec
Q 006909          362 GKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGL  439 (626)
Q Consensus       362 g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~iwd~~~~~~~~~~~  439 (626)
                      +..| ++-...+.|.++++.+.....  + ...    .......+++.|.+..++++-... +.|.++++..........
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~--l-~~~----~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~  536 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKT--L-FRE----QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  536 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEE--E-CCC----SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEE--E-EeC----CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence            4444 444556789999887654321  1 111    113467889998764444443333 678887754322211111


Q ss_pred             CCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCC
Q 006909          440 PKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL  474 (626)
Q Consensus       440 ~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~  474 (626)
                      ........++|+|++..|+.+ +..+.|.+++++..
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            123456789999876655544 45678999998753

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.77  E-value=0.5  Score=46.77  Aligned_cols=187  Identities=12%  Similarity=0.136  Sum_probs=109.0

Q ss_pred             ceEEEEEcCCCeEEEEe-------------CCCcEEEeccCC--CeeeEeec--------CCCCeEEEEEeeC-CCC-EE
Q 006909          270 DVLDLAWSNSNYLLSCS-------------MDKTVRMWQVGC--NQCLNVFD--------HHNYVTCVQFNPI-DDN-YF  324 (626)
Q Consensus       270 ~V~~l~~s~~~~l~s~s-------------~d~~v~iwd~~~--~~~~~~~~--------~~~~v~~~~~~p~-~~~-~l  324 (626)
                      ..-+++..|+|.+++++             .+|.|.++|..+  ++. ..+.        ..-....+.+.+. ++. +|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            44566778888766665             689999999873  222 2222        1235677777661 233 34


Q ss_pred             EEE-eC--CCcEEEEeCCC--CeEEEe--cc--CCCCeEEEEEeeCCCEEEEEec-----------------CCcEEEEE
Q 006909          325 ISG-SI--DGKVRIWGVCE--KRVVDW--AD--VRDVISAICYIPDGKGFIVGSI-----------------TGTCHFYK  378 (626)
Q Consensus       325 ~s~-s~--dg~v~iwd~~~--~~~~~~--~~--~~~~i~~i~~sp~g~~l~~g~~-----------------dg~i~i~d  378 (626)
                      +.+ ..  +.+|.+|++..  +.....  ..  .-...+.+.+.++|.+.++...                 .|.+..++
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            443 32  45677876643  332221  11  1245789999999987666541                 23444454


Q ss_pred             cCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-c----eeeeeecCCCCCeEEEEEcC-
Q 006909          379 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-V----IHKFKGLPKSGSQMSASFTT-  452 (626)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~----~~~~~~~~~~~~v~~~~~sp-  452 (626)
                      .  .+..  .. ..+.     ...+.++|+||+..++++-+..+.|..|++.. .    ...+.   ..+..-.+++.+ 
T Consensus       210 ~--~~~~--~~-~~~l-----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e  276 (355)
T 3sre_A          210 P--NDVR--VV-AEGF-----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPV  276 (355)
T ss_dssp             T--TCCE--EE-EEEE-----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTT
T ss_pred             C--CeEE--Ee-ecCC-----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCC
Confidence            4  2221  11 1111     46789999999855556666788999999642 1    12221   245677888888 


Q ss_pred             CCCEEEEEeCC-ccEEEEE
Q 006909          453 TGKHIISIGDD-CRVYVWN  470 (626)
Q Consensus       453 ~g~~l~s~s~d-g~I~iwd  470 (626)
                      +|++.+++..+ +.|..|+
T Consensus       277 ~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          277 TGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             TCCEEEEEESCHHHHHSCC
T ss_pred             CCcEEEEecCCceEEEEEC
Confidence            58887766544 3444443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.60  E-value=0.46  Score=46.81  Aligned_cols=150  Identities=11%  Similarity=0.002  Sum_probs=84.2

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe-------ccCCCCeEEEEEeeC---CCEEEEEe---cCCc
Q 006909          307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------ADVRDVISAICYIPD---GKGFIVGS---ITGT  373 (626)
Q Consensus       307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~-------~~~~~~i~~i~~sp~---g~~l~~g~---~dg~  373 (626)
                      .-...+.|+|.| ++.++++--..|.|++++..++.....       .........|+++|+   +..|++..   .++.
T Consensus        30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            345678999999 898777655489999998765554322       123456789999995   34555432   3455


Q ss_pred             EEEEEcCCCc-----eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEeCCcc---
Q 006909          374 CHFYKASGND-----LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-------------DSKLRILDGVDV---  432 (626)
Q Consensus       374 i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~-------------dg~i~iwd~~~~---  432 (626)
                      |.-|.+....     .......+.............|.|.||| .++++.+.             .|.|.-++....   
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~  187 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP  187 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence            6666665421     1111111111111112345679999998 45555332             355555554321   


Q ss_pred             ------eeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909          433 ------IHKFKGLPKSGSQMSASFTTTGKHIISI  460 (626)
Q Consensus       433 ------~~~~~~~~~~~~v~~~~~sp~g~~l~s~  460 (626)
                            ...+. ..+ .....++|+|+|.+.++=
T Consensus       188 ~nPf~~~~i~a-~G~-RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          188 GNPFPGSPVYS-YGH-RNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             TCSSTTCCEEE-BCC-SBCCEEEECTTCCEEEEE
T ss_pred             CCCCCCCeEEe-eCC-CCcceEEECCCCCEEEEe
Confidence                  11222 223 345689999988766653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.56  E-value=0.53  Score=46.59  Aligned_cols=150  Identities=15%  Similarity=0.141  Sum_probs=86.3

Q ss_pred             ceEEEEEcC--CC--eEEEEeC---CCcEEEeccCCC--e--eeEeecC--CCCeEEEEEeeCCCCEEEEEeC-------
Q 006909          270 DVLDLAWSN--SN--YLLSCSM---DKTVRMWQVGCN--Q--CLNVFDH--HNYVTCVQFNPIDDNYFISGSI-------  329 (626)
Q Consensus       270 ~V~~l~~s~--~~--~l~s~s~---d~~v~iwd~~~~--~--~~~~~~~--~~~v~~~~~~p~~~~~l~s~s~-------  329 (626)
                      ....|.+.+  ++  +|+.+..   +.+|.+|++..+  .  .+..+.+  -...+.+.+.+ ++.++++...       
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence            455555544  33  4554422   467888877543  2  2223332  34688999999 8887776541       


Q ss_pred             ----------CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccC
Q 006909          330 ----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTS  398 (626)
Q Consensus       330 ----------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  398 (626)
                                .|.|.-+|.  +++......-...+.++|+||++.++++. ..+.|..|++.........-.+..     
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-----  264 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-----  264 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-----
T ss_pred             ccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-----
Confidence                      244555555  33333333345678999999999888765 568999999874322111111111     


Q ss_pred             CCCeEEEEEcC-CCCcEEEEEeCC-CcEEEEe
Q 006909          399 GNKITGIQFSR-DESQRIMITSED-SKLRILD  428 (626)
Q Consensus       399 ~~~i~~l~~s~-~~~~~l~~~s~d-g~i~iwd  428 (626)
                      ....-.+++.+ +| .+.+++..+ +.|..|+
T Consensus       265 ~g~PDGi~vD~e~G-~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          265 DTLVDNISVDPVTG-DLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             SSEEEEEEECTTTC-CEEEEEESCHHHHHSCC
T ss_pred             CCCCceEEEeCCCC-cEEEEecCCceEEEEEC
Confidence            25677888888 47 455545433 3444444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.49  E-value=0.041  Score=49.90  Aligned_cols=173  Identities=9%  Similarity=0.008  Sum_probs=94.0

Q ss_pred             eEEEEeCCCcEEEeccCCCe------eeEeecC--CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCC
Q 006909          281 YLLSCSMDKTVRMWQVGCNQ------CLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV  352 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~------~~~~~~~--~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  352 (626)
                      .|+....| +|+.=....+.      ....+..  -..+..++|+| ++.+.++  .+|.++-.+..+.....+......
T Consensus         6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~   81 (236)
T 1tl2_A            6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK   81 (236)
T ss_dssp             CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred             EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence            45555555 55443333222      1223333  24677999999 9987766  678877777655332222222222


Q ss_pred             --------eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee--E-EeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          353 --------ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--K-VDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       353 --------i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~--~-~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                              ..++.|.|+|.+.++  .||.|+-++-.+......  . .....   ..-..+..|.|.|+| .+. +.. |
T Consensus        82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~---~gw~~~~~lff~p~G-~Ly-av~-d  153 (236)
T 1tl2_A           82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGS---GGWSGFKFLFFHPNG-YLY-AVH-G  153 (236)
T ss_dssp             EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEEC---SSGGGEEEEEECTTS-CEE-EEE-T
T ss_pred             ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEecc---CCCCceEEEEECCCc-eEE-EEe-C
Confidence                    378999999987777  669887776533221110  0 00000   001367899999998 444 444 7


Q ss_pred             CcEEEEeCC-cc------eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909          422 SKLRILDGV-DV------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  467 (626)
Q Consensus       422 g~i~iwd~~-~~------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~  467 (626)
                      +.++-.... ..      .....+......-.-+.|++++...++.  ++.++
T Consensus       154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence            775433211 00      1112222223334456789998877766  66443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.38  E-value=0.2  Score=48.44  Aligned_cols=182  Identities=9%  Similarity=0.054  Sum_probs=93.7

Q ss_pred             CeEEEEeCC-----CcEEEeccCCCe---eeEeec--CCCCeEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q 006909          280 NYLLSCSMD-----KTVRMWQVGCNQ---CLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVV  344 (626)
Q Consensus       280 ~~l~s~s~d-----~~v~iwd~~~~~---~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~~~~  344 (626)
                      ..++.|+.+     ..+.+||+.+++   ....-.  ....-.+++..  ++.+++.|+.+     ..+.+||+.+.+-.
T Consensus        64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            356666654     468899988765   333221  11111122222  66777777654     35889998876644


Q ss_pred             EeccCC--CCeEEEEEeeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          345 DWADVR--DVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       345 ~~~~~~--~~i~~i~~sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      ......  ..-.+++ ..+++.++.|+.+     ..+.+||+.+....... ....    .......+.+  ++ .+++.
T Consensus       142 ~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~----~r~~~~~~~~--~~-~i~v~  212 (301)
T 2vpj_A          142 MLGDMQTAREGAGLV-VASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT-PMAT----KRSGAGVALL--ND-HIYVV  212 (301)
T ss_dssp             EEEECSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC-CCSS----CCBSCEEEEE--TT-EEEEE
T ss_pred             ECCCCCCCcccceEE-EECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC-CCCc----ccccceEEEE--CC-EEEEE
Confidence            332211  1111222 2367777777654     46889998876543221 1111    0111122222  33 57777


Q ss_pred             EeCC-----CcEEEEeCCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909          418 TSED-----SKLRILDGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  474 (626)
Q Consensus       418 ~s~d-----g~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~  474 (626)
                      |+.+     ..+.+||..+..-.... ... ......+.  -+++.++.|+.+     ..|.+||..+.
T Consensus       213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            7654     56899997743322211 111 11122222  256677777654     45778887764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.38  E-value=0.3  Score=47.13  Aligned_cols=182  Identities=14%  Similarity=0.148  Sum_probs=92.8

Q ss_pred             eEEEEeCC-----CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCC-----cEEEEeCCCCeEEEecc
Q 006909          281 YLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVVDWAD  348 (626)
Q Consensus       281 ~l~s~s~d-----~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~  348 (626)
                      .++.|+.+     ..+.+||..+++....-.  ....-.+++..  ++.+++.|+.++     .+.+||+.+.+-.....
T Consensus        64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~  141 (302)
T 2xn4_A           64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP  141 (302)
T ss_dssp             EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC
T ss_pred             EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC
Confidence            55666644     358889988776544322  11111122222  677788887653     57889988776544322


Q ss_pred             CCCC--eEEEEEeeCCCEEEEEecC-------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909          349 VRDV--ISAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  419 (626)
Q Consensus       349 ~~~~--i~~i~~sp~g~~l~~g~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s  419 (626)
                      ...+  -.+++. .+++.++.|+.+       ..+.+||+.+....... .....    ......+.+  ++ .+++.|+
T Consensus       142 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG  212 (302)
T 2xn4_A          142 MNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMSTR----RSGAGVGVL--NN-LLYAVGG  212 (302)
T ss_dssp             CSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEECC
T ss_pred             CCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC-CCccc----cccccEEEE--CC-EEEEECC
Confidence            2211  112222 366677776643       35888998876543221 11110    111122222  33 5777776


Q ss_pred             CC-----CcEEEEeCCcceeee-eecCCCCCeEEEEEcCCCCEEEEEeCCc-----cEEEEECCCC
Q 006909          420 ED-----SKLRILDGVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL  474 (626)
Q Consensus       420 ~d-----g~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~s~s~dg-----~I~iwd~~~~  474 (626)
                      .+     ..+.+||..+..-.. ........-.+++. .+++.++.|+.++     .+.+||..+.
T Consensus       213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             BSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            54     468899976433221 11111111111222 2566777776543     4777887764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.21  E-value=0.83  Score=53.00  Aligned_cols=140  Identities=11%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             CeEEEEe----------CCCcEEEeccCCCeeeEe--ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe-
Q 006909          280 NYLLSCS----------MDKTVRMWQVGCNQCLNV--FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-  346 (626)
Q Consensus       280 ~~l~s~s----------~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~-  346 (626)
                      .+|+.|.          ..|.|.++++..++....  ....++|++++-.  +| +|++|- ..+|++|++...+.+.. 
T Consensus       845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g-~Lla~i-g~~l~vy~l~~~~~L~~~  920 (1158)
T 3ei3_A          845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NG-KLLASI-NSTVRLYEWTTEKELRTE  920 (1158)
T ss_dssp             CEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TT-EEEEEE-TTEEEEEEECTTSCEEEE
T ss_pred             EEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CC-EEEEEc-CCEEEEEECCCCceEEEE
Confidence            3777665          347899999875433222  2467888888754  45 444443 57899999986543331 


Q ss_pred             ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909          347 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  426 (626)
Q Consensus       347 ~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i  426 (626)
                      ..+-..|..+.....++++++|..-..+.++..+........+.-    ......++++.+-.++  .++.+..+|.|.+
T Consensus       921 ~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~----D~~~~~vta~~~ld~~--t~l~aD~~gNl~v  994 (1158)
T 3ei3_A          921 CNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR----DFNPNWMSAVEILDDD--NFLGAENAFNLFV  994 (1158)
T ss_dssp             EEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE----CCSCBCEEEEEEEETT--EEEEEETTSEEEE
T ss_pred             eeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe----ecccccEEEEEEEccC--cEEEEcCCCcEEE
Confidence            111122334445456889999998888887665433322222221    1223678999988764  7888999999999


Q ss_pred             EeC
Q 006909          427 LDG  429 (626)
Q Consensus       427 wd~  429 (626)
                      +..
T Consensus       995 l~~  997 (1158)
T 3ei3_A          995 CQK  997 (1158)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            863

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.20  E-value=0.14  Score=51.44  Aligned_cols=143  Identities=13%  Similarity=0.177  Sum_probs=91.9

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeecCC-----CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe-------------
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFDHH-----NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-------------  342 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~-------------  342 (626)
                      .++.+- ++.||.-++......+.+...     ..|..+..+| +|++|+..+ +..|.|..+..+.             
T Consensus        34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q  110 (452)
T 3pbp_A           34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ  110 (452)
T ss_dssp             EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred             EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence            444443 367887777644444454432     2578899999 999999886 4678888876221             


Q ss_pred             EEEec-c-----CCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcCCCceeeeEEeecc---ccccCCCCeEEEEEcCC
Q 006909          343 VVDWA-D-----VRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKKTSGNKITGIQFSRD  410 (626)
Q Consensus       343 ~~~~~-~-----~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~s~~  410 (626)
                      +..+. +     ...+|..+.|||-   +..|++-..|+.|++||+.........+....   ........|.+++|.++
T Consensus       111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~  190 (452)
T 3pbp_A          111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKD  190 (452)
T ss_dssp             EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTT
T ss_pred             eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCC
Confidence            11111 1     2567999999994   56899999999999999986321111111000   01112267899999997


Q ss_pred             CCcEEEEEe--CCCcEEEE
Q 006909          411 ESQRIMITS--EDSKLRIL  427 (626)
Q Consensus       411 ~~~~l~~~s--~dg~i~iw  427 (626)
                      + -.|.+.+  .+|.|+-.
T Consensus       191 ~-lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          191 G-LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             S-SCEEEEECTTSCEEEEE
T ss_pred             C-cEEEEEecCCCCCEEEE
Confidence            6 5566644  77888664

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.13  E-value=0.76  Score=44.31  Aligned_cols=180  Identities=9%  Similarity=0.128  Sum_probs=94.0

Q ss_pred             eEEEEeCC----CcEEEeccCCCeeeEeec--CCC-CeEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCeEEEec
Q 006909          281 YLLSCSMD----KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWA  347 (626)
Q Consensus       281 ~l~s~s~d----~~v~iwd~~~~~~~~~~~--~~~-~v~~~~~~p~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~  347 (626)
                      .++.|+.+    ..+.+||..+++....-.  ... ....+.+   ++.+++.|+.+      ..+.+||..+.+-....
T Consensus        58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            56666654    568889988776544332  111 1222222   67777888765      45899999887644432


Q ss_pred             cCCC--CeEEEEEeeCCCEEEEEec---------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          348 DVRD--VISAICYIPDGKGFIVGSI---------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       348 ~~~~--~i~~i~~sp~g~~l~~g~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      ....  .-.+++ ..+++.++.|+.         -..+.+||+.+....... .+..    ....- ++... ++ ++++
T Consensus       135 ~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~----~r~~~-~~~~~-~~-~i~v  205 (306)
T 3ii7_A          135 SMLTQRCSHGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC-PMIE----ARKNH-GLVFV-KD-KIFA  205 (306)
T ss_dssp             CCSSCCBSCEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC-CCSS----CCBSC-EEEEE-TT-EEEE
T ss_pred             CCcCCcceeEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC-Cccc----hhhcc-eEEEE-CC-EEEE
Confidence            2211  111222 236666777654         345889998877543221 1111    00111 22222 33 5666


Q ss_pred             EEeCC-----CcEEEEeCCcceeeee-ecC-CCCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909          417 ITSED-----SKLRILDGVDVIHKFK-GLP-KSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  474 (626)
Q Consensus       417 ~~s~d-----g~i~iwd~~~~~~~~~-~~~-~~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~  474 (626)
                      .|+.+     ..+.+||..+..-... ..+ .......+.+  +++.++.|+.+     ..+.+||..+.
T Consensus       206 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          206 VGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            66543     4688899764322211 111 1112222333  56777777744     46778887764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.02  E-value=3.3  Score=48.04  Aligned_cols=224  Identities=8%  Similarity=0.040  Sum_probs=120.9

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeE--eecCCCCeEEEEEeeCC-----CCEEEEEeC-CCcEEEEeCCC
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPID-----DNYFISGSI-DGKVRIWGVCE  340 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~~p~~-----~~~l~s~s~-dg~v~iwd~~~  340 (626)
                      ..|...+.+. .+++.++ ++.+.++.+..++...  .......|.|+++.|..     ..+++.|.. |++|+|+++.+
T Consensus       514 ~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          514 KNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             CCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             CEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            3566666554 3455554 5778888877654322  23456789999998622     478999997 99999999987


Q ss_pred             CeEEEeccC--CCCeEEEEEee--CCCEEEEEecCCcEEEEEcCC--CceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          341 KRVVDWADV--RDVISAICYIP--DGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       341 ~~~~~~~~~--~~~i~~i~~sp--~g~~l~~g~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      -+.+.....  .....++.+..  ...+|.+|-.||.+.-+.+..  +.........-+.     .++.=..+...|..-
T Consensus       592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~-----~pv~L~~~~~~~~~~  666 (1158)
T 3ei3_A          592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT-----QPTVLRTFRSLSTTN  666 (1158)
T ss_dssp             CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS-----SCCEEEEEESSSCEE
T ss_pred             CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC-----CceEEEEEeeCCcee
Confidence            665544333  23455555543  335788999999987776653  3332222222221     344444444444334


Q ss_pred             EEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC--CCEEEEEeCCccEEEEECCCCCC--CCCCccCCccceee
Q 006909          415 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT--GKHIISIGDDCRVYVWNYDELCF--PSSKQKNSVRSCEH  490 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~~~~~  490 (626)
                      +++.+. ....++..... ..+.......--....|+..  ..-++..+ ++.++|..+++...  ......+.....++
T Consensus       667 V~a~s~-rp~liy~~~~~-l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~  743 (1158)
T 3ei3_A          667 VFACSD-RPTVIYSSNHK-LVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKIC  743 (1158)
T ss_dssp             EEEESS-SCEEEEESSSS-EEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEE
T ss_pred             EEEECC-CCEEEEEcCCc-eEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEE
Confidence            444443 33333432222 22332222222234456432  23344443 55699988865411  01112223334456


Q ss_pred             eccCCcEEEEec
Q 006909          491 FFSEGVSVAVQW  502 (626)
Q Consensus       491 ~~~~g~~~av~~  502 (626)
                      ++|+...+++.-
T Consensus       744 y~~~~~~~~v~~  755 (1158)
T 3ei3_A          744 YQEVSQCFGVLS  755 (1158)
T ss_dssp             EEGGGTEEEEEE
T ss_pred             EcCCCCEEEEEE
Confidence            777666655543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.96  E-value=0.52  Score=45.61  Aligned_cols=173  Identities=12%  Similarity=0.068  Sum_probs=87.0

Q ss_pred             CcEEEeccCCCeeeEeec--CC-CCeEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCeEEEeccCCCC--eEEEEE
Q 006909          289 KTVRMWQVGCNQCLNVFD--HH-NYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV--ISAICY  358 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~--~~-~~v~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~--i~~i~~  358 (626)
                      ..+.+||..+++....-.  .. .....+.+   ++.+++.|+.+     ..+.+||..+.+-........+  -.+++.
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  166 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV  166 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence            468889988775443322  11 11222222   66777777643     3588999988765443222111  112222


Q ss_pred             eeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEe
Q 006909          359 IPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILD  428 (626)
Q Consensus       359 sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----g~i~iwd  428 (626)
                       -+++.++.|+.+     ..+.+||+.+....... .+..    ....-..+.+  ++ .+++.|+.+     ..+.+||
T Consensus       167 -~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~----~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd  237 (308)
T 1zgk_A          167 -LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT-AMNT----IRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYD  237 (308)
T ss_dssp             -ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC-CCSS----CCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEE
T ss_pred             -ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC-CCCC----ccccceEEEE--CC-EEEEEeCCCCCCccceEEEEe
Confidence             267777777654     46889998776543221 1111    1111222223  33 577777654     5689999


Q ss_pred             CCcceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909          429 GVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  474 (626)
Q Consensus       429 ~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~  474 (626)
                      ..+..-.... .+....-.+++. -+++.++.|+.+     ..+.+||+.+.
T Consensus       238 ~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          238 VETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             TTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            7643322211 111111112222 256666666643     34667776653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.95  E-value=2.7  Score=46.49  Aligned_cols=193  Identities=12%  Similarity=0.153  Sum_probs=114.3

Q ss_pred             ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 006909          268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  346 (626)
Q Consensus       268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~  346 (626)
                      ...|.++....++.|..++.+| +..||..+.+...... ....|.++.. . ++ .|..++.+ -|..+|..+++....
T Consensus        62 ~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g-~lWigt~~-Gl~~~~~~~~~~~~~  136 (758)
T 3ott_A           62 NTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GD-TLWLGALN-GLYTYQLQSRKLTSF  136 (758)
T ss_dssp             SSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-E-TT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred             CceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-c-CC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence            3468888877888888887765 7889988765433111 2335777654 3 45 45556655 588899887776544


Q ss_pred             c-----cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          347 A-----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       347 ~-----~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                      .     .....|.++....+|. |.+|+.. -+..|+..+.....  .............|.++...+++ ..|.+|+. 
T Consensus       137 ~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-  210 (758)
T 3ott_A          137 DTRRNGLPNNTIYSIIRTKDNQ-IYVGTYN-GLCRYIPSNGKFEG--IPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-  210 (758)
T ss_dssp             CHHHHCCSCSCEEEEEECTTCC-EEEEETT-EEEEEETTTTEEEE--ECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-
T ss_pred             ccCCCCcCCCeEEEEEEcCCCC-EEEEeCC-CHhhCccCCCceEE--ecCCCccccccceeEEEEEECCC-CEEEEEEC-
Confidence            1     1234678888777775 4456654 57778876654321  11111111112458888877765 34444543 


Q ss_pred             CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          422 SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       422 g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +-+..+|..+.. ..+... ....|.++....+|.+.+.. .+ -+.+++..+.
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~  261 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTT  261 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEE-EEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTS
T ss_pred             CCCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCC
Confidence            457888865432 222211 12357788888888766654 44 5788887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.90  E-value=1.7  Score=43.77  Aligned_cols=190  Identities=11%  Similarity=0.129  Sum_probs=117.5

Q ss_pred             EcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-eEEEe-ccC----
Q 006909          276 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDW-ADV----  349 (626)
Q Consensus       276 ~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~-~~~~~-~~~----  349 (626)
                      .+|...+++--...++.|+|+++.+.++.+.....|.-=.|-  +.+.|+..+ +..|+-|++.+. ..+.. ..|    
T Consensus        73 MnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~  149 (494)
T 1bpo_A           73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA  149 (494)
T ss_dssp             ECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             eCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEec--CCCeEEEEc-CCeeEEecccCCCCchhheecchhcc
Confidence            355543333223689999999999999999888888888887  456666655 468999999642 23222 222    


Q ss_pred             CCCeEEEEEeeCCCEEEEEe-------cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc--CCCCcEEEEEeC
Q 006909          350 RDVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITSE  420 (626)
Q Consensus       350 ~~~i~~i~~sp~g~~l~~g~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~~~~~l~~~s~  420 (626)
                      ...|..-..+++.++++..+       -.|.+.+|..+......    ..++    ...-..+.+.  +....++..+..
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~----ieGh----aa~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE----ECCS----EEEEEEEECTTCSSEEEEEEEEEC
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch----heee----eeeeEEEecCCCCCCceEEEEEEe
Confidence            35677777788999887644       24678899887654322    1111    1111111111  111123333333


Q ss_pred             ---CCcEEEEeCCcc---eeee-----ee----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909          421 ---DSKLRILDGVDV---IHKF-----KG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  476 (626)
Q Consensus       421 ---dg~i~iwd~~~~---~~~~-----~~----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~  476 (626)
                         .++++|.++...   ...+     ..    .....-..++..++.-..++.-+.-|.|++||+.++..
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence               378899887432   1111     11    11244567888899888999999999999999999843

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.81  E-value=1.6  Score=42.89  Aligned_cols=243  Identities=12%  Similarity=0.048  Sum_probs=123.7

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      ++...-..-+.|+|.|||+++++--..|.|++++..++......-                                   
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~-----------------------------------   70 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGE-----------------------------------   70 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-----------------------------------
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecc-----------------------------------
Confidence            333444568899999999988876558989888755432110000                                   


Q ss_pred             ccCCCceeeccCccceEEEEEcCC----CeEEEE---eCCCcEEEeccCCC----------eee-Eeec--CCCCeEEEE
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNS----NYLLSC---SMDKTVRMWQVGCN----------QCL-NVFD--HHNYVTCVQ  315 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~----~~l~s~---s~d~~v~iwd~~~~----------~~~-~~~~--~~~~v~~~~  315 (626)
                         .+ ..+.........|+++|+    +.|+.+   ..++.|.-|.+..+          +.+ ..+.  .......|.
T Consensus        71 ---~~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~  146 (347)
T 3das_A           71 ---VP-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIA  146 (347)
T ss_dssp             ---CT-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEE
T ss_pred             ---cC-ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCcccc
Confidence               00 011223456789999985    544432   23455665655431          111 1121  112346799


Q ss_pred             EeeCCCCEEEEEeC-------------CCcEEEEeCCCC---------eEEEeccCCCCeEEEEEeeCCCEEEEEe-cCC
Q 006909          316 FNPIDDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIPDGKGFIVGS-ITG  372 (626)
Q Consensus       316 ~~p~~~~~l~s~s~-------------dg~v~iwd~~~~---------~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg  372 (626)
                      |.| ++.++++.+.             .|.|.-.+....         ..+...+++ ....++|+|+|...++-. .++
T Consensus       147 fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~  224 (347)
T 3das_A          147 FGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDT  224 (347)
T ss_dssp             ECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSS
T ss_pred             CCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCC
Confidence            999 8887777542             244544554432         111222333 355789999876555432 222


Q ss_pred             cEEEEEcCCCceeee-EEee----cc------ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee----eee
Q 006909          373 TCHFYKASGNDLKLE-KVDF----HD------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFK  437 (626)
Q Consensus       373 ~i~i~d~~~~~~~~~-~~~~----~~------~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~----~~~  437 (626)
                      .-.|.-+..+..--. ....    ..      ....+......++|.. | ..++..-..+.|....+.....    ...
T Consensus       225 ~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~~  302 (347)
T 3das_A          225 WDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQAF  302 (347)
T ss_dssp             CEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEEE
T ss_pred             CceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceecceEEe
Confidence            222322222111000 0000    00      0000113567788874 3 4666666666676665432210    111


Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEe
Q 006909          438 GLPKSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       438 ~~~~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      .......+..+...|||.++++..
T Consensus       303 l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          303 LEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             STTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ecCCCCCccEEEECCCCcEEEEEc
Confidence            112346788899999987666654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.69  E-value=1.7  Score=42.10  Aligned_cols=172  Identities=10%  Similarity=0.028  Sum_probs=85.8

Q ss_pred             EEEeccCCCeeeEeecCCCCe--EEEEEeeCCCCEEEEEeCC--------CcEEEEeCCCCeEEEeccCCCC-eEEEEEe
Q 006909          291 VRMWQVGCNQCLNVFDHHNYV--TCVQFNPIDDNYFISGSID--------GKVRIWGVCEKRVVDWADVRDV-ISAICYI  359 (626)
Q Consensus       291 v~iwd~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~~~~~-i~~i~~s  359 (626)
                      +.+||..+++-...-....+-  .+++..  ++.+++.|+.+        ..+.+||..+.+-........+ ....+..
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  146 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS  146 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence            778888877653332211111  122222  66777777742        4589999988764443222111 1111222


Q ss_pred             eCCCEEEEEec-C-----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEe
Q 006909          360 PDGKGFIVGSI-T-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-----KLRILD  428 (626)
Q Consensus       360 p~g~~l~~g~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg-----~i~iwd  428 (626)
                      .+++.++.|+. +     ..+.+||..+....... ....    ....-..+.+  ++ ++++.|+.++     .+.+||
T Consensus       147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~----~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd  218 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQT----ARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYS  218 (315)
T ss_dssp             ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCSS----CCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEE
T ss_pred             ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCCC----chhceEEEEE--CC-EEEEEeccCCCCccceEEEEE
Confidence            56677777776 2     46889998876543221 1111    0011122222  33 5777776554     578888


Q ss_pred             CCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCCc--------------cEEEEECCCC
Q 006909          429 GVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDDC--------------RVYVWNYDEL  474 (626)
Q Consensus       429 ~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~dg--------------~I~iwd~~~~  474 (626)
                      ..+..-.... .+. ......+.  -+++.++.|+.++              .+.+||+.+.
T Consensus       219 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          219 ITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             CCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            7643322211 111 11122222  2567777776532              3667777654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.51  E-value=0.61  Score=48.09  Aligned_cols=109  Identities=10%  Similarity=0.099  Sum_probs=62.0

Q ss_pred             CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc---------CCCCeEEEEEeeC---CCEEEEEec-----
Q 006909          308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---------VRDVISAICYIPD---GKGFIVGSI-----  370 (626)
Q Consensus       308 ~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~i~~i~~sp~---g~~l~~g~~-----  370 (626)
                      -...+.|+|.| +++++++-...+.|++++..++....+..         .......|+|+|+   +..|++...     
T Consensus        26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            34567999999 89877765444578888865554332111         2456779999995   556655543     


Q ss_pred             --------CCcEEEEEcCCCceee--eEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909          371 --------TGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  418 (626)
Q Consensus       371 --------dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~  418 (626)
                              ...|.-|+........  ....+.............|+|.||| .++++.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~  161 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTI  161 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEE
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEE
Confidence                    2356666654332111  1111111111122457899999998 454443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.49  E-value=0.043  Score=49.73  Aligned_cols=101  Identities=11%  Similarity=0.098  Sum_probs=64.3

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCC--------eEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNPIDDNYFISGSIDGKVRIWGVCE  340 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~  340 (626)
                      ..+.+++|+|++.|.+. .+|.+.-.+..+.+...-+.....        -.++.|.| ++.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence            36779999999877777 777766666544222211111112        36888998 8887777  569998887643


Q ss_pred             CeEEEec--------cCCCCeEEEEEeeCCCEEEEEecCCcEE
Q 006909          341 KRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCH  375 (626)
Q Consensus       341 ~~~~~~~--------~~~~~i~~i~~sp~g~~l~~g~~dg~i~  375 (626)
                      ...-.+.        ..=..+..|.+.|+|.+.++.  |+.++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            2211111        111357899999999877766  77754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.19  E-value=1.1  Score=43.93  Aligned_cols=92  Identities=7%  Similarity=-0.047  Sum_probs=55.0

Q ss_pred             eCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEee-C-------CCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCC
Q 006909          286 SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP-I-------DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV  352 (626)
Q Consensus       286 s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p-~-------~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  352 (626)
                      +.||.|..++..+|.....+.     ...++.. .-.| .       .+..+++|+.+|.+...|+.+|+.+-......+
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~  142 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK  142 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence            578999999988875554442     2233332 1001 0       356788999999999999999998765544322


Q ss_pred             e--------EEEEEe-----eCCCEEEEEecCCcEEEEE
Q 006909          353 I--------SAICYI-----PDGKGFIVGSITGTCHFYK  378 (626)
Q Consensus       353 i--------~~i~~s-----p~g~~l~~g~~dg~i~i~d  378 (626)
                      .        .|....     -.+..++.+..+..+.+.+
T Consensus       143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             CC--------------------CCEEEEEEEEEECEECC
T ss_pred             cccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence            1        111110     1235677777777777766

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.14  E-value=1.1  Score=52.04  Aligned_cols=204  Identities=12%  Similarity=0.156  Sum_probs=116.3

Q ss_pred             ccceEEEEEcCCCeEEEEeCCCcEEEeccCC-CeeeEeec-C----CCCeEEEEEeeCCCCEEEEEe-------CCCcEE
Q 006909          268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-H----HNYVTCVQFNPIDDNYFISGS-------IDGKVR  334 (626)
Q Consensus       268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~-~----~~~v~~~~~~p~~~~~l~s~s-------~dg~v~  334 (626)
                      ..+|.-=.|-....|+-.+. ..|..|++.. ..+.+.|. |    ...|..-..++ +.+.++..+       ..|.+.
T Consensus       105 ~e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQ  182 (1630)
T 1xi4_A          105 TDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQ  182 (1630)
T ss_pred             CCCceEEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceee
Confidence            34566667766664444433 4699999964 34445553 2    34566666777 666665433       347889


Q ss_pred             EEeCCCCeEEEeccCCCCeEEEEEe--eC-CCEEEEEec---CCcEEEEEcCCC---ceee--eEEeeccccccCCCCeE
Q 006909          335 IWGVCEKRVVDWADVRDVISAICYI--PD-GKGFIVGSI---TGTCHFYKASGN---DLKL--EKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       335 iwd~~~~~~~~~~~~~~~i~~i~~s--p~-g~~l~~g~~---dg~i~i~d~~~~---~~~~--~~~~~~~~~~~~~~~i~  403 (626)
                      +|....+....+.+|......+...  +. ...++.+..   .+.++|.++...   ....  ......-......+-..
T Consensus       183 LyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv  262 (1630)
T 1xi4_A          183 LYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (1630)
T ss_pred             eeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence            9988776655555554443333221  11 122222222   368888888543   1111  11111111112234556


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++..++.. ..+...+.-|.|.++|+.+....+...-...+|...+.+....-++.....|.|.--.++..
T Consensus       263 ~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          263 AMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             EEEecccc-CEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence            77777775 48888899999999999988777766545556655554443334444556777766666554

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=94.76  E-value=0.00026  Score=53.06  Aligned_cols=56  Identities=21%  Similarity=0.326  Sum_probs=42.5

Q ss_pred             hhccccccceeeeeecc--ccccccccccccCCC--Cc---ccccChhhHHHHHHHHHHhhcc
Q 006909           79 ELEQDQMNECVVTLEGE--SNGFSQSVDKFENPF--PE---CKGVNIKKVKKLWKRIISMKKR  134 (626)
Q Consensus        79 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~  134 (626)
                      .|+++|+++++++|.+|  ..+.....+.|..++  +.   ......++|+|+|..++|+|++
T Consensus         4 iLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK   66 (88)
T 1uuj_A            4 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK   66 (88)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence            47899999999999999  445666677776654  21   1123459999999999999998

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.71  E-value=6.4  Score=43.38  Aligned_cols=182  Identities=10%  Similarity=0.129  Sum_probs=107.8

Q ss_pred             ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909          270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  344 (626)
Q Consensus       270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~  344 (626)
                      .|.++.. .++.|..++.+ -|..+|..+++......     ....|.++.... ++.+.+ |+.+ -|..++..+++..
T Consensus       104 ~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~  178 (758)
T 3ott_A          104 DVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFE  178 (758)
T ss_dssp             CEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEE
T ss_pred             eEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceE
Confidence            4666654 45667777766 57888887665433211     235688888776 666555 4544 4778888777654


Q ss_pred             EeccC------CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909          345 DWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  418 (626)
Q Consensus       345 ~~~~~------~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~  418 (626)
                      .....      ...|.++...+++..|.+|+. +.+..|+..+....... ...      ...|.++...++|  .|.+|
T Consensus       179 ~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~-~l~------~~~i~~i~~d~~g--~lWig  248 (758)
T 3ott_A          179 GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTE-AFH------NNSIKSLALDGNG--DLLAG  248 (758)
T ss_dssp             EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEE-EEE------EEEEEEEEECTTC--CEEEE
T ss_pred             EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEecc-CCC------CCeEEEEEEcCCC--CEEEE
Confidence            33211      234788887777777777775 46888887765432211 111      1458888888776  34445


Q ss_pred             eCCCcEEEEeCCcc-eeeeeec------CCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909          419 SEDSKLRILDGVDV-IHKFKGL------PKSGSQMSASFTTTGKHIISIGDDCRVYVW  469 (626)
Q Consensus       419 s~dg~i~iwd~~~~-~~~~~~~------~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw  469 (626)
                      +. +-+.+++..+. ...+...      -....|.++....+|.+-+.. ..| +.++
T Consensus       249 T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT-~~G-l~~~  303 (758)
T 3ott_A          249 TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT-DYG-ISLS  303 (758)
T ss_dssp             ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE-SSS-EEEE
T ss_pred             eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe-CCc-cccc
Confidence            54 45788886532 2222211      123458888888888765543 445 5444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.11  E-value=4.4  Score=38.99  Aligned_cols=159  Identities=7%  Similarity=0.001  Sum_probs=89.0

Q ss_pred             CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe----CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCE
Q 006909          289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG  364 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s----~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~  364 (626)
                      ..|+..++..++.......  .  +..|++ +++.|+-..    .+..|..-++.+.....+..+..    ..++|+++.
T Consensus        88 ~~Iy~i~~dg~~~~~l~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~  158 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDPD--P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY  158 (302)
T ss_dssp             EEEEEEETTSCCCEEEECS--C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred             CeEEEEeCCCCcceEeecC--C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence            4577777776654333222  2  236777 777777665    23456666776655554444432    456788988


Q ss_pred             EEEEec-CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEeCCcc-eeeeeecC
Q 006909          365 FIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--SKLRILDGVDV-IHKFKGLP  440 (626)
Q Consensus       365 l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d--g~i~iwd~~~~-~~~~~~~~  440 (626)
                      |+-.+. ...|...++.+....  .+ ..       .... ..+.|++. +|+-....  ..|..-++... ...+.   
T Consensus       159 iy~t~~g~~~Iy~~~l~g~~~~--~l-~~-------~~~~-~~~~P~g~-~iy~t~~~~~~~I~~~~ldG~~~~~Lt---  223 (302)
T 3s25_A          159 FYYNNPKNGQLYRYDTASQSEA--LF-YD-------CNCY-KPVVLDDT-NVYYMDVNRDNAIVHVNINNPNPVVLT---  223 (302)
T ss_dssp             EEEECTTTCCEEEEETTTTEEE--EE-EC-------SCEE-EEEEEETT-EEEEEEGGGTTEEEEECSSSCCCEECS---
T ss_pred             EEEEeCCCceEEEEECCCCCEE--EE-eC-------CCcc-ceeeecCC-EEEEEEcCCCcEEEEEECCCCCeEEEe---
Confidence            886655 567888887765432  12 11       1222 23568874 55544433  35555555422 22221   


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC--CccEEEEECCCC
Q 006909          441 KSGSQMSASFTTTGKHIISIGD--DCRVYVWNYDEL  474 (626)
Q Consensus       441 ~~~~v~~~~~sp~g~~l~s~s~--dg~I~iwd~~~~  474 (626)
                       ...+  ..|+|++++|+-++.  .+.|..-+++..
T Consensus       224 -~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          224 -EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             -CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             -CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence             1233  347888999887643  356777777653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.09  E-value=1.4  Score=43.61  Aligned_cols=146  Identities=12%  Similarity=0.132  Sum_probs=78.2

Q ss_pred             CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-e-------ccCCCCeEEEEEeeC---CCEEEEEec-------
Q 006909          309 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W-------ADVRDVISAICYIPD---GKGFIVGSI-------  370 (626)
Q Consensus       309 ~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~-------~~~~~~i~~i~~sp~---g~~l~~g~~-------  370 (626)
                      .....|+|.| +++.|+++...|.|++++... .... +       .........|+++|+   +..|++...       
T Consensus        18 ~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLP-DNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECS-TTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcC-CCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3568999999 888344456679999998543 2211 1       112345689999996   455555432       


Q ss_pred             -CCcEEEEEcCCCceee--eEEeecccc--ccCCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEeCCcc
Q 006909          371 -TGTCHFYKASGNDLKL--EKVDFHDRK--KTSGNKITGIQFSRDESQRIMITSE-------------DSKLRILDGVDV  432 (626)
Q Consensus       371 -dg~i~i~d~~~~~~~~--~~~~~~~~~--~~~~~~i~~l~~s~~~~~~l~~~s~-------------dg~i~iwd~~~~  432 (626)
                       ...|..|++.......  ....+....  .........|+|.||| .++++.+.             .|.|.-++....
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence             2356666665432111  111111111  0111234679999998 44444332             245666664321


Q ss_pred             --------------eeeeeecCCCCCeEEEEEcC-CCCEEEE
Q 006909          433 --------------IHKFKGLPKSGSQMSASFTT-TGKHIIS  459 (626)
Q Consensus       433 --------------~~~~~~~~~~~~v~~~~~sp-~g~~l~s  459 (626)
                                    ...+..  .......++|+| +|++.++
T Consensus       175 ~p~~npf~~~~~~~~~i~a~--G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSY--GIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEE--CCSEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCcCCCCCCccEEEE--cCcCccceEEECCCCCEEEE
Confidence                          112221  123567899999 5554443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.00  E-value=4.1  Score=38.97  Aligned_cols=181  Identities=10%  Similarity=0.078  Sum_probs=93.7

Q ss_pred             eEEEEeC--CCcEEEeccCCCeeeEeec--C-CCCeEEEEEeeCCCCEEEEEeCC----CcEEEEeCCCCeEEEeccCCC
Q 006909          281 YLLSCSM--DKTVRMWQVGCNQCLNVFD--H-HNYVTCVQFNPIDDNYFISGSID----GKVRIWGVCEKRVVDWADVRD  351 (626)
Q Consensus       281 ~l~s~s~--d~~v~iwd~~~~~~~~~~~--~-~~~v~~~~~~p~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~  351 (626)
                      .++.|+.  ...+.+||..+++-...-.  . ......+.+   ++.+++.|+.+    ..+.+||..+++-........
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            4445544  3568889988776543322  1 112222222   67778888755    568899998876444322211


Q ss_pred             --CeEEEEEeeCCCEEEEEecC------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC---
Q 006909          352 --VISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE---  420 (626)
Q Consensus       352 --~i~~i~~sp~g~~l~~g~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~---  420 (626)
                        .-.+++ .-+++.++.|+.+      ..+.+||..+...... ..+...    ...-..+.+  ++ .+++.|+.   
T Consensus        91 ~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~  161 (306)
T 3ii7_A           91 PRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQ----RCSHGMVEA--NG-LIYVCGGSLGN  161 (306)
T ss_dssp             CCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSC----CBSCEEEEE--TT-EEEEECCEESC
T ss_pred             cccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCC----cceeEEEEE--CC-EEEEECCCCCC
Confidence              111222 2367777777765      4688999887654322 111110    011122222  33 56666653   


Q ss_pred             ------CCcEEEEeCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909          421 ------DSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  474 (626)
Q Consensus       421 ------dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~  474 (626)
                            -..+.+||..+..-... .......-.++.. -+++.++.|+.+     ..+.+||+.+.
T Consensus       162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             CCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence                  34588999764432221 1111111112222 256677776643     46889998875

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.96  E-value=4.7  Score=38.78  Aligned_cols=162  Identities=8%  Similarity=-0.002  Sum_probs=87.4

Q ss_pred             CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC--------------CcEEEEeCCCCeEEEeccCCCCe
Q 006909          288 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--------------GKVRIWGVCEKRVVDWADVRDVI  353 (626)
Q Consensus       288 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d--------------g~v~iwd~~~~~~~~~~~~~~~i  353 (626)
                      ++.|...+.......+....    .+--+++ +++.|+-+...              ..|+..++.+++...+....   
T Consensus        36 ~~~ly~~~~dg~~~~~l~~~----~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~---  107 (302)
T 3s25_A           36 NGRLYAMNIDGSNIHKLSND----TAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP---  107 (302)
T ss_dssp             TTEEEEEETTSCSCEEEEEE----EEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC---
T ss_pred             CceEEEEcCCCCCCEEccCC----ceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC---
Confidence            45555555554333222221    1334577 77777766543              35777788776544433322   


Q ss_pred             EEEEEeeCCCEEEEEe--cCC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909          354 SAICYIPDGKGFIVGS--ITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       354 ~~i~~sp~g~~l~~g~--~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~  429 (626)
                       +..++++++.|+-..  .++  .|+..++.+...  ..+...        .+  ..+++++..+..+.....+|.+.++
T Consensus       108 -~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~~lt~~--------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l  174 (302)
T 3s25_A          108 -CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--KKIKNH--------YL--FTCNTSDRYFYYNNPKNGQLYRYDT  174 (302)
T ss_dssp             -EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--EEEESS--------CC--CCSEEETTEEEEECTTTCCEEEEET
T ss_pred             -ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--EEEeCC--------Cc--eEeeEECCEEEEEeCCCceEEEEEC
Confidence             236788999988776  334  455555554332  222211        11  3456777444444444678888886


Q ss_pred             CcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC--ccEEEEECCCC
Q 006909          430 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD--CRVYVWNYDEL  474 (626)
Q Consensus       430 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d--g~I~iwd~~~~  474 (626)
                      ..........   +... ..++|++.+|+-....  ..|..-++++.
T Consensus       175 ~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~  217 (302)
T 3s25_A          175 ASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP  217 (302)
T ss_dssp             TTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred             CCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence            6433222121   2222 3456999998876544  35666677665

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.88  E-value=6.6  Score=40.25  Aligned_cols=32  Identities=16%  Similarity=0.129  Sum_probs=23.1

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 006909          181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS  212 (626)
Q Consensus       181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~  212 (626)
                      -...+.|+|.|+|+++++-...+.|++++..+
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~   57 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPES   57 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence            34578999999999877754444677776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.84  E-value=2.8  Score=48.74  Aligned_cols=190  Identities=11%  Similarity=0.124  Sum_probs=112.8

Q ss_pred             cCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-eEEEec-cC----C
Q 006909          277 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWA-DV----R  350 (626)
Q Consensus       277 s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~-~~----~  350 (626)
                      +|...+++--...++.|+|+++.+.++.+....+|.-=.|-  +.+.|+..+ +..|+-|++.+. .++... .|    .
T Consensus        74 nP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~  150 (1630)
T 1xi4_A           74 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG  150 (1630)
T ss_pred             CCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhccc
Confidence            45443333334688999999999999999888888877886  456665554 467999999642 222211 11    3


Q ss_pred             CCeEEEEEeeCCCEEEEEe-------cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc--CCCCcEEEEEeC-
Q 006909          351 DVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITSE-  420 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l~~g~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~~~~~l~~~s~-  420 (626)
                      ..|..-..+++.++++..+       ..|.+.+|.........    ..++    ...-..+...  +.....+..+.. 
T Consensus       151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~----iegh----a~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh----hhHh----HhhhheeccCCCCCCceEEEEEEec
Confidence            5577777788899887644       34788898876544321    1111    1111111111  111112221111 


Q ss_pred             --CCcEEEEeCCcc---eeeee---------ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909          421 --DSKLRILDGVDV---IHKFK---------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  477 (626)
Q Consensus       421 --dg~i~iwd~~~~---~~~~~---------~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~  477 (626)
                        .++++|.++...   ...+.         ......-..++..++.-..+...+.-|.|+++|+.++...
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh
Confidence              368888886432   11111         0111334456777888788888899999999999998443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.74  E-value=3.1  Score=39.68  Aligned_cols=173  Identities=9%  Similarity=0.035  Sum_probs=88.3

Q ss_pred             CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCe---EEEeccCC--CCeEEE
Q 006909          289 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKR---VVDWADVR--DVISAI  356 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~~---~~~~~~~~--~~i~~i  356 (626)
                      ..+.+||+.+++....-.  ....-.+++. . ++.+++.|+.+     ..+.+||..+.+   -.......  ..-.++
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            368889988776443322  1111112222 2 67778888765     468999988766   33322211  111122


Q ss_pred             EEeeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEE
Q 006909          357 CYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRI  426 (626)
Q Consensus       357 ~~sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----g~i~i  426 (626)
                      + ..+++.++.|+.+     ..+.+||+.+....... ......    ..-..+.+  ++ .+++.|+.+     ..+.+
T Consensus       109 ~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r----~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~  179 (301)
T 2vpj_A          109 T-TLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-DMQTAR----EGAGLVVA--SG-VIYCLGGYDGLNILNSVEK  179 (301)
T ss_dssp             E-EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-ECSSCC----BSCEEEEE--TT-EEEEECCBCSSCBCCCEEE
T ss_pred             E-EECCEEEEEcccCCCcccceEEEEcCCCCeEEECC-CCCCCc----ccceEEEE--CC-EEEEECCCCCCcccceEEE
Confidence            2 2367777777654     36888998876643321 111110    11122222  43 566776654     46888


Q ss_pred             EeCCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909          427 LDGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  474 (626)
Q Consensus       427 wd~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~  474 (626)
                      ||..+..-.... .+. ......+.  -+++.++.|+.+     ..+.+||+.+.
T Consensus       180 ~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          180 YDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            997643322211 111 11112222  256666777654     46788888765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.47  E-value=3.3  Score=40.00  Aligned_cols=130  Identities=8%  Similarity=0.076  Sum_probs=67.1

Q ss_pred             EEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC-------CcEEEEeCCCCeEEEeccCCCCe--EEEEEe
Q 006909          291 VRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-------GKVRIWGVCEKRVVDWADVRDVI--SAICYI  359 (626)
Q Consensus       291 v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d-------g~v~iwd~~~~~~~~~~~~~~~i--~~i~~s  359 (626)
                      +.+||..+++-...-.  ....-.+++..  ++.+++.|+.+       ..+.+||..+.+-........+.  .+++ .
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~  156 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI-S  156 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE-E
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEE-E
Confidence            7778887766544322  11111122222  67777888764       24888998887654433222211  1222 2


Q ss_pred             eCCCEEEEEec------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEe
Q 006909          360 PDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILD  428 (626)
Q Consensus       360 p~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----g~i~iwd  428 (626)
                      .+++.++.|+.      -..+.+||+.+....... .....    ......+ .. ++ .+++.|+.+     ..+.+||
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~-~~-~~-~iyv~GG~~~~~~~~~~~~yd  228 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA-PMKTP----RSMFGVA-IH-KG-KIVIAGGVTEDGLSASVEAFD  228 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC-CCSSC----CBSCEEE-EE-TT-EEEEEEEEETTEEEEEEEEEE
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC-CCCCC----cccceEE-EE-CC-EEEEEcCcCCCCccceEEEEE
Confidence            56777777764      245889998876543221 11110    0111222 22 33 566776543     3567888


Q ss_pred             CCc
Q 006909          429 GVD  431 (626)
Q Consensus       429 ~~~  431 (626)
                      ..+
T Consensus       229 ~~~  231 (318)
T 2woz_A          229 LKT  231 (318)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.37  E-value=3.2  Score=39.68  Aligned_cols=173  Identities=13%  Similarity=0.165  Sum_probs=87.4

Q ss_pred             CcEEEeccCCCeeeEeecCCC--CeEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCeEEEeccCCCC--eEEEEEe
Q 006909          289 KTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV--ISAICYI  359 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~--i~~i~~s  359 (626)
                      ..+.+||+.+++....-....  .-.+++..  ++.+++.|+.+     ..+.+||..+.+-........+  -.+++ .
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA-V  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-E
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE-E
Confidence            357888888765433321111  11122222  67777777755     3588999988765443322111  11222 2


Q ss_pred             eCCCEEEEEecCC-----cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-------CcEEEE
Q 006909          360 PDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-------SKLRIL  427 (626)
Q Consensus       360 p~g~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-------g~i~iw  427 (626)
                      .+++.++.|+.++     .+.+||+.+....... .....    .... +++.. ++ .+++.|+.+       ..+.+|
T Consensus       107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~y  178 (302)
T 2xn4_A          107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-PMNTR----RSSV-GVGVV-GG-LLYAVGGYDVASRQCLSTVECY  178 (302)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC-CCSSC----CBSC-EEEEE-TT-EEEEECCEETTTTEECCCEEEE
T ss_pred             ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC-CCCCc----ccCc-eEEEE-CC-EEEEEeCCCCCCCccccEEEEE
Confidence            3677777787654     5778888776543221 11110    1111 22222 33 566666542       458889


Q ss_pred             eCCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909          428 DGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  474 (626)
Q Consensus       428 d~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~  474 (626)
                      |..+..-.... .+. ......+.  -+++.++.|+.+     ..+.+||+.+.
T Consensus       179 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          179 NATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             eCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            97643322211 111 11122222  256777777654     36888888765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.04  E-value=2.6  Score=41.44  Aligned_cols=88  Identities=8%  Similarity=0.122  Sum_probs=49.0

Q ss_pred             CcEEEeccCCCeeeEeecCC-C--CeEEEEEeeCCCCEEEEEeCC-----------------------------------
Q 006909          289 KTVRMWQVGCNQCLNVFDHH-N--YVTCVQFNPIDDNYFISGSID-----------------------------------  330 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~~~-~--~v~~~~~~p~~~~~l~s~s~d-----------------------------------  330 (626)
                      ..+.+||+.+.+-...-... .  .-.++.. . ++.+++.|+.+                                   
T Consensus        86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (357)
T 2uvk_A           86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED  163 (357)
T ss_dssp             CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred             ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence            46888999877654332211 1  1122222 3 77888888764                                   


Q ss_pred             ----CcEEEEeCCCCeEEEeccCC--CCe-EEEEEeeCCCEEEEEec------CCcEEEEEc
Q 006909          331 ----GKVRIWGVCEKRVVDWADVR--DVI-SAICYIPDGKGFIVGSI------TGTCHFYKA  379 (626)
Q Consensus       331 ----g~v~iwd~~~~~~~~~~~~~--~~i-~~i~~sp~g~~l~~g~~------dg~i~i~d~  379 (626)
                          ..+.+||..+.+-.......  ... .+++. -+++.++.|+.      ...+.+||+
T Consensus       164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence                47899999886644332221  111 22332 35666677654      345777876

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.68  E-value=7  Score=37.07  Aligned_cols=182  Identities=12%  Similarity=0.024  Sum_probs=96.1

Q ss_pred             ceEEEEEcCCCeEEEEeCCCcEEEeccCC-CeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEEec
Q 006909          270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWA  347 (626)
Q Consensus       270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~  347 (626)
                      .|..++......++. . ||.|..|-... +++-........|..++...   .+.+.-. +|.|+.|-... +++-...
T Consensus        64 ~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            566666554444444 4 88888886543 22211112234677777653   4444455 99999997653 3322122


Q ss_pred             cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909          348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  427 (626)
Q Consensus       348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw  427 (626)
                      .....|..++.-.+  ..+.-. +|.+..|-.........    +   ......|..++....  ..++.  .||.|..|
T Consensus       138 ~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~----p---~~~~~~v~~i~~G~~--hs~al--~~G~v~~w  203 (282)
T 3qhy_B          138 EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV----P---AEAQSGVDDVAGGIF--HSLAL--KDGKVIAW  203 (282)
T ss_dssp             GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC----C---GGGGSSEEEEEECSS--EEEEE--ETTEEEEE
T ss_pred             cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC----c---eecCCCeEEEEecCC--EEEEE--ECCeEEEE
Confidence            22345666554332  333333 79999887654332111    0   001256888877654  24444  59999999


Q ss_pred             eCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          428 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       428 d~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      =....-+.-........|..++-.... .++ -. ||.|+.|-....
T Consensus       204 G~n~~gqlg~p~~~~~~v~~i~~G~~h-~~a-l~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          204 GDNRYKQTTVPTEALSGVSAIASGEWY-SLA-LK-NGKVIAWGSSRT  247 (282)
T ss_dssp             ECCTTSTTCCCGGGGSSCCEEEECSSC-EEE-EE-TTEEEEESTTCC
T ss_pred             ECCCCCCCCCCcccCCCceEEEcCCCE-EEE-EE-CCEEEEecCCCC
Confidence            643211110001112346666654433 233 33 999999987653

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.13  E-value=10  Score=37.76  Aligned_cols=146  Identities=8%  Similarity=-0.015  Sum_probs=70.8

Q ss_pred             cceEEEEEcC---CCeEEEEeCCCcEEEeccCCCeeeEeec--------------------CCCCeEEEEEeeCCCCEEE
Q 006909          269 GDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       269 ~~V~~l~~s~---~~~l~s~s~d~~v~iwd~~~~~~~~~~~--------------------~~~~v~~~~~~p~~~~~l~  325 (626)
                      ..|.++++.|   .+.|..+...+.|...+-. ++....+.                    ....+.+|.+.|.+.+.++
T Consensus       115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~  193 (394)
T 3b7f_A          115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY  193 (394)
T ss_dssp             CEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred             cceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence            3578888875   4566666665655544322 22222211                    1235789999874455555


Q ss_pred             EEeCCCcEEEEeCCCCeEEEecc-C------------CCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEee
Q 006909          326 SGSIDGKVRIWGVCEKRVVDWAD-V------------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDF  391 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~~~~~~-~------------~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  391 (626)
                      .+..++.|...+-....-..... .            ...+.++.++|. ...++++...+ |...+-....  ...+. 
T Consensus       194 vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~t--W~~~~-  269 (394)
T 3b7f_A          194 IGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGV--WKRIG-  269 (394)
T ss_dssp             EEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTE--EECGG-
T ss_pred             EEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCc--ceECC-
Confidence            55545545544322222111111 0            124889999985 45677776544 4444322222  11111 


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909          392 HDRKKTSGNKITGIQFSRDESQRIMITS  419 (626)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s  419 (626)
                      ..........+..+.+.|.....+.++.
T Consensus       270 ~~l~~~~~~~~~~i~~~p~~~~~l~~~t  297 (394)
T 3b7f_A          270 DAMPREVGDIGFPIVVHQRDPRTVWVFP  297 (394)
T ss_dssp             GGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred             CCCCCCCccceEEEEECCCCCCEEEEEe
Confidence            0000000134567888764334555553

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.62  E-value=8.8  Score=41.80  Aligned_cols=104  Identities=17%  Similarity=0.245  Sum_probs=61.7

Q ss_pred             CC-eEEEEeCC------CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCeEEEec
Q 006909          279 SN-YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWA  347 (626)
Q Consensus       279 ~~-~l~s~s~d------~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~  347 (626)
                      ++ .++.|+.+      ..+.+||..+++-...-.  ....-.+++... ++.+++.|+.++  .+.+||..+..-....
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            44 55666543      357888988765443322  111112233323 778888888655  6999999887644432


Q ss_pred             c------CCCCeEEEEEeeC-CCEEEEEecC-------CcEEEEEcCCCc
Q 006909          348 D------VRDVISAICYIPD-GKGFIVGSIT-------GTCHFYKASGND  383 (626)
Q Consensus       348 ~------~~~~i~~i~~sp~-g~~l~~g~~d-------g~i~i~d~~~~~  383 (626)
                      .      ......++.+..+ ++.++.|+.+       ..+.+||+.+..
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            2      2223344555555 6677777652       468899998876

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.30  E-value=13  Score=35.55  Aligned_cols=180  Identities=9%  Similarity=0.090  Sum_probs=91.9

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEe-ecCC-CCeEEEEEeeCCCCEEEEEeC----C-------CcEEEEeCCCCeEEEec
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNV-FDHH-NYVTCVQFNPIDDNYFISGSI----D-------GKVRIWGVCEKRVVDWA  347 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~-~~~~-~~v~~~~~~p~~~~~l~s~s~----d-------g~v~iwd~~~~~~~~~~  347 (626)
                      .++.|+  ..+.+||..+++-... +... .......... ++.+++.|+.    +       ..+.+||..+++-....
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            344555  5689999988775431 1111 1222222233 7788888874    1       12778898887654433


Q ss_pred             cCCCCe--EEEEEeeCCCEEEEEecC--------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          348 DVRDVI--SAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       348 ~~~~~i--~~i~~sp~g~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      ....+-  .+++. -+++.++.|+.+        ..+.+||..+....... .+...    ...- +++. -++ .+++.
T Consensus        84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~-~~~~-~~~-~iyv~  154 (315)
T 4asc_A           84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPYV----VYGH-TVLS-HMD-LVYVI  154 (315)
T ss_dssp             CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSSC----CBSC-EEEE-ETT-EEEEE
T ss_pred             CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCCc----ccce-eEEE-ECC-EEEEE
Confidence            222211  12222 266666777642        46889998876543211 11110    0111 2222 233 56667


Q ss_pred             EeC-C-----CcEEEEeCCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCCc-----cEEEEECCCC
Q 006909          418 TSE-D-----SKLRILDGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL  474 (626)
Q Consensus       418 ~s~-d-----g~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~dg-----~I~iwd~~~~  474 (626)
                      |+. +     ..+.+||..+..-.... .+. ......+.  -+++.++.|+.++     .+.+||+.+.
T Consensus       155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             CCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             eCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCC
Confidence            665 2     46889997643322111 111 11112222  2667777777543     5888888765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.94  E-value=7.9  Score=37.00  Aligned_cols=172  Identities=10%  Similarity=0.045  Sum_probs=87.6

Q ss_pred             CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeC----C-----CcEEEEeCCCCeEEEeccCC---CCeE
Q 006909          289 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSI----D-----GKVRIWGVCEKRVVDWADVR---DVIS  354 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~----d-----g~v~iwd~~~~~~~~~~~~~---~~i~  354 (626)
                      ..+.+||..+++....-.  ....-.+++..  ++.+++.|+.    +     ..+.+||..+.+-.......   ....
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  116 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG  116 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence            357888887765443321  11111122222  6677777765    2     46889999887654433221   1122


Q ss_pred             EEEEeeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----CcE
Q 006909          355 AICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKL  424 (626)
Q Consensus       355 ~i~~sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----g~i  424 (626)
                      ++.  -+++.++.|+.+     ..+.+||..+....... .....    ...-..+.+  ++ .+++.|+.+     ..+
T Consensus       117 ~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~  186 (308)
T 1zgk_A          117 VGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTR----RIGVGVAVL--NR-LLYAVGGFDGTNRLNSA  186 (308)
T ss_dssp             EEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSC----CBSCEEEEE--TT-EEEEECCBCSSCBCCCE
T ss_pred             EEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCCcc----ccceEEEEE--CC-EEEEEeCCCCCCcCceE
Confidence            222  367777777644     36888998876543221 11110    111122222  33 566776654     468


Q ss_pred             EEEeCCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909          425 RILDGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  474 (626)
Q Consensus       425 ~iwd~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~  474 (626)
                      .+||..+..-.... .+. ......+.+  +++.++.|+.+     ..+.+||+.+.
T Consensus       187 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          187 ECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            88987643322111 111 111222222  56677777654     46888888765

>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}

Probab=89.27  E-value=0.17  Score=31.42  Aligned_cols=18  Identities=33%  Similarity=0.650  Sum_probs=15.7

Q ss_pred             CCCCCCcceeeeccCCcc
Q 006909            3 SSDEGVDDVFFDSTDCLS   20 (626)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~   20 (626)
                      .|||+||..||||.+-|.
T Consensus        12 ~SdEDed~EfFDA~efIT   29 (47)
T 2rr3_B           12 MSDEDDENEFFDAPEIIT   29 (47)
T ss_dssp             SCCCCCSSCCBCCCSSCS
T ss_pred             ccccccccccccccceeE
Confidence            479999999999988776

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.19  E-value=9.5  Score=41.54  Aligned_cols=152  Identities=13%  Similarity=0.167  Sum_probs=80.8

Q ss_pred             CCCeEEEEeCC----CcEEEeccCCCeeeEee-c-------CC-CCeEEEEEeeCCCCEEEEEeCC------CcEEEEeC
Q 006909          278 NSNYLLSCSMD----KTVRMWQVGCNQCLNVF-D-------HH-NYVTCVQFNPIDDNYFISGSID------GKVRIWGV  338 (626)
Q Consensus       278 ~~~~l~s~s~d----~~v~iwd~~~~~~~~~~-~-------~~-~~v~~~~~~p~~~~~l~s~s~d------g~v~iwd~  338 (626)
                      .+..++.|+.+    ..+.+||..+++....- .       .. ....++.+.. ++.+++.|+.+      ..+.+||.
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeC
Confidence            33466666643    46888888877544332 1       11 1223333322 45677777654      35788998


Q ss_pred             CCCeEEEeccCC--CCeEEEEEeeCCCEEEEEecCC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          339 CEKRVVDWADVR--DVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       339 ~~~~~~~~~~~~--~~i~~i~~sp~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      .+..-.......  ..-.+++...+++.++.|+.++  .+.+||..+......  ...+........-..+.+..+...+
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~--~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV--TPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC--CCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc--cCCCCCCCcccceeEEEEeCCCCEE
Confidence            886544332221  1122333334788888887765  689999987664322  1111011111222335555542256


Q ss_pred             EEEEeC--C-----CcEEEEeCCcc
Q 006909          415 IMITSE--D-----SKLRILDGVDV  432 (626)
Q Consensus       415 l~~~s~--d-----g~i~iwd~~~~  432 (626)
                      ++.|+.  +     +.+.+||..+.
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCC
Confidence            777665  2     46888886543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.96  E-value=1.8  Score=44.95  Aligned_cols=97  Identities=13%  Similarity=0.036  Sum_probs=65.4

Q ss_pred             cEEEEeCCC-----CeEEEeccCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcCCCcee-------ee-EEeecccccc
Q 006909          332 KVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLK-------LE-KVDFHDRKKT  397 (626)
Q Consensus       332 ~v~iwd~~~-----~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~-------~~-~~~~~~~~~~  397 (626)
                      .|.+.|.+.     .....+.........+.++|||+++++++. +.++.++|+......       .. .+..+   ..
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae---~e  375 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE---PE  375 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC---CB
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee---cc
Confidence            467777765     234455566677788999999999988664 679999998742110       00 01001   11


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV  432 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~  432 (626)
                      .+-.....+|.++| ....+-.-|..|.-|++...
T Consensus       376 ~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          376 LGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHH
T ss_pred             CCCcccEEEECCCC-ceEeeeeecceEEEEeccHH
Confidence            23567789999998 56666678999999997643

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.79  E-value=23  Score=35.13  Aligned_cols=155  Identities=9%  Similarity=-0.015  Sum_probs=78.3

Q ss_pred             cceEEEEEcC--CCeEEEEeCCC----cEEEeccCCCeeeEeec---------------CCCCeEEEEEeeCC-CCEEEE
Q 006909          269 GDVLDLAWSN--SNYLLSCSMDK----TVRMWQVGCNQCLNVFD---------------HHNYVTCVQFNPID-DNYFIS  326 (626)
Q Consensus       269 ~~V~~l~~s~--~~~l~s~s~d~----~v~iwd~~~~~~~~~~~---------------~~~~v~~~~~~p~~-~~~l~s  326 (626)
                      ..|.+|++.|  .+.|..++..+    .|...+ ..++.-..+.               ....|.++++.|.+ .+.+..
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            4689999988  55666665555    344332 2222222211               11247788998744 566666


Q ss_pred             EeCCCcEEEEeCCCCeEEEecc-------------------CCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceee
Q 006909          327 GSIDGKVRIWGVCEKRVVDWAD-------------------VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKL  386 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~~~~~~~-------------------~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~  386 (626)
                      +...+.|...+-....-.....                   ....+.+|.++|. ...++++..++.|...+-.+..  .
T Consensus       134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~t--W  211 (394)
T 3b7f_A          134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTD--W  211 (394)
T ss_dssp             EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSS--C
T ss_pred             EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCC--c
Confidence            6666666555433222111111                   1235788999883 4566666655544433222211  1


Q ss_pred             eEEee--ccc-cc----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909          387 EKVDF--HDR-KK----TSGNKITGIQFSRDESQRIMITSEDSKLRIL  427 (626)
Q Consensus       387 ~~~~~--~~~-~~----~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw  427 (626)
                      .....  ... ..    .....+.++.+.|..+..+.++...+ |...
T Consensus       212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s  258 (394)
T 3b7f_A          212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM  258 (394)
T ss_dssp             EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred             eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence            11110  000 00    00135889999987445677776555 4443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.56  E-value=20  Score=34.21  Aligned_cols=173  Identities=10%  Similarity=0.094  Sum_probs=86.4

Q ss_pred             cEEEeccCCCeeeEee-c--CCCCeEEEEEeeCCCCEEEEEeC----CC-------cEEEEeCCCCeEEEeccCCCC--e
Q 006909          290 TVRMWQVGCNQCLNVF-D--HHNYVTCVQFNPIDDNYFISGSI----DG-------KVRIWGVCEKRVVDWADVRDV--I  353 (626)
Q Consensus       290 ~v~iwd~~~~~~~~~~-~--~~~~v~~~~~~p~~~~~l~s~s~----dg-------~v~iwd~~~~~~~~~~~~~~~--i  353 (626)
                      .+..||..+++....- .  ....-.+++ .. ++.+++.|+.    ++       .+.+||..+.+-........+  -
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            3788999887754421 1  112222332 33 7788888873    12       177889887765543322211  1


Q ss_pred             EEEEEeeCCCEEEEEecC-------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC------
Q 006909          354 SAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE------  420 (626)
Q Consensus       354 ~~i~~sp~g~~l~~g~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~------  420 (626)
                      .+++. -+++.++.|+.+       ..+.+||..+....... ......    ..- +++. .++ .+++.|+.      
T Consensus       103 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r----~~~-~~~~-~~~-~iyv~GG~~~~~~~  173 (318)
T 2woz_A          103 FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKV----YGH-NVIS-HNG-MIYCLGGKTDDKKC  173 (318)
T ss_dssp             CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCE----ESC-EEEE-ETT-EEEEECCEESSSCB
T ss_pred             cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcc----ccc-EEEE-ECC-EEEEEcCCCCCCCc
Confidence            12222 267777777764       25788888776543221 111100    111 1222 243 56666653      


Q ss_pred             CCcEEEEeCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909          421 DSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  474 (626)
Q Consensus       421 dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~  474 (626)
                      -..+.+||..+..-... .......-.+++. -+++.++.|+.+     ..+.+||+.+.
T Consensus       174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             cceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            24689999765432221 1111111112222 256777777643     35778888765

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.72  E-value=12  Score=38.23  Aligned_cols=113  Identities=12%  Similarity=0.105  Sum_probs=62.1

Q ss_pred             CCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccc-----cCCCCeEEEEEcCC---CCcEEEEEeC-
Q 006909          351 DVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-----TSGNKITGIQFSRD---ESQRIMITSE-  420 (626)
Q Consensus       351 ~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~i~~l~~s~~---~~~~l~~~s~-  420 (626)
                      .....|+|.|+|. .|+++...|.|++++..+...............     ........|+|+|+   +..+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3456899999996 577778899999997543321111111111111     11357889999996   2133333322 


Q ss_pred             -C----------CcEEEEeCC----------cceeeeee--cCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909          421 -D----------SKLRILDGV----------DVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD  463 (626)
Q Consensus       421 -d----------g~i~iwd~~----------~~~~~~~~--~~~~~~v~~~~~sp~g~~l~s~s~d  463 (626)
                       +          ..|.-|...          +....+..  .........+.|.|||.+.++.++.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence             1          133334321          11122221  1223456789999999888877653

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=84.19  E-value=34  Score=33.78  Aligned_cols=167  Identities=5%  Similarity=0.038  Sum_probs=98.5

Q ss_pred             cEEEeccCCC--eeeEeec-------CCCCeEEEEEeeC--C----CCEEEEEe-CCCcEEEEeCCCCeEEEecc----C
Q 006909          290 TVRMWQVGCN--QCLNVFD-------HHNYVTCVQFNPI--D----DNYFISGS-IDGKVRIWGVCEKRVVDWAD----V  349 (626)
Q Consensus       290 ~v~iwd~~~~--~~~~~~~-------~~~~v~~~~~~p~--~----~~~l~s~s-~dg~v~iwd~~~~~~~~~~~----~  349 (626)
                      .|.+||+.++  +.++.+.       ....+..+++...  .    +.++..+. ..+.|.++|+.+++..+...    .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5888999999  8888774       2346788888721  1    33444433 45779999999887655331    0


Q ss_pred             ---------------CCCeEEEEEeeC----CCEEEEEecCCcEEEEEcC-----CCceeeeEEeeccccccCCCCeEEE
Q 006909          350 ---------------RDVISAICYIPD----GKGFIVGSITGTCHFYKAS-----GNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       350 ---------------~~~i~~i~~sp~----g~~l~~g~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                                     ...+..|+++|+    ++.|+-....+. ++|.+.     .... ...+...+.+ .....-..+
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~-~~~v~~~G~k-g~~s~~~~~  280 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGG-KLNPELLGNR-GKYNDAIAL  280 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTC-CCCCEEEEEC-CTTCCEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcch-hhceEEeeec-CCCCCcceE
Confidence                           246778888887    677777665542 334332     2221 1112222211 111234456


Q ss_pred             EEc-CCCCcEEEEEeCCCcEEEEeCCc-ce-----eeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909          406 QFS-RDESQRIMITSEDSKLRILDGVD-VI-----HKFKGLPKSGSQMSASFTTTGKHIISI  460 (626)
Q Consensus       406 ~~s-~~~~~~l~~~s~dg~i~iwd~~~-~~-----~~~~~~~~~~~v~~~~~sp~g~~l~s~  460 (626)
                      ++. .+| .++++--..+.|..|+... ..     ..+.....-..+..+.+.++|.+.+..
T Consensus       281 ~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          281 AYDPKTK-VIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             EECTTTC-EEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EEeCCCC-eEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            675 555 6777778889999999765 22     333332234456777776666554544

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=83.50  E-value=1.1  Score=43.80  Aligned_cols=109  Identities=7%  Similarity=0.016  Sum_probs=68.8

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEee-CCCCEEEEE--eCCCcEEEEeCCCCeEEEeccC----
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNP-IDDNYFISG--SIDGKVRIWGVCEKRVVDWADV----  349 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p-~~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~----  349 (626)
                      ++.++.++.||.|.-.|..+|+....+...  .++....-.. ..+..++.+  +.||.|..++..+|...-....    
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            458999999999999999999999988643  2332221111 012234433  5799999999887754321111    


Q ss_pred             -CCCeEE---EEE-e----eCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909          350 -RDVISA---ICY-I----PDGKGFIVGSITGTCHFYKASGNDLKLE  387 (626)
Q Consensus       350 -~~~i~~---i~~-s----p~g~~l~~g~~dg~i~i~d~~~~~~~~~  387 (626)
                       ..++..   ..+ .    ..+..+++|+.+|.+...|+.+++....
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA  136 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence             111111   000 0    1455788999999999999999887544

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=83.06  E-value=35  Score=32.98  Aligned_cols=148  Identities=8%  Similarity=0.084  Sum_probs=88.6

Q ss_pred             CCeEEEEeCCCcEEEeccCCCe-------eeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC--CCe-------
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQ-------CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKR-------  342 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~-------~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~--~~~-------  342 (626)
                      +.+++.++.+|.|+.-.+....       ....+...+.+..+.... ....++..+..|.+..+...  .-.       
T Consensus       109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~  187 (327)
T 3uc1_A          109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATS  187 (327)
T ss_dssp             SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred             CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence            4589999999999988764322       112233455666666655 56778888889998877765  211       


Q ss_pred             --EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee----EEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          343 --VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       343 --~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                        ..........|.++...+.+..+++.+..|.++.-.+........    ...+.  .....+.+..+....+. ..++
T Consensus       188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~--l~~~~d~lv~~~~~~~~-~~i~  264 (327)
T 3uc1_A          188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM--YDRRRGRLVGALIVDDD-SELY  264 (327)
T ss_dssp             CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC--CCTTTCSEEEEEEECTT-CEEE
T ss_pred             CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE--ecCCCCeEEEEEEeCCC-ccEE
Confidence              111122345677777666777899999999998887654332110    11111  11112345555444333 4677


Q ss_pred             EEeCCCcEEEEeCC
Q 006909          417 ITSEDSKLRILDGV  430 (626)
Q Consensus       417 ~~s~dg~i~iwd~~  430 (626)
                      ..+.+|.+.-++..
T Consensus       265 l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          265 AVTSGGGVIRTAAR  278 (327)
T ss_dssp             EEEGGGCEEEEEGG
T ss_pred             EEcCCCeEEEEehh
Confidence            77777877777643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=82.49  E-value=50  Score=34.42  Aligned_cols=193  Identities=13%  Similarity=0.133  Sum_probs=104.9

Q ss_pred             eEEEEe-CCCcEEEeccCCCeeeEeec--CCCCeEEEEEe--eCCCCEEEEEeC-------CCcE---------EE---E
Q 006909          281 YLLSCS-MDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFN--PIDDNYFISGSI-------DGKV---------RI---W  336 (626)
Q Consensus       281 ~l~s~s-~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~--p~~~~~l~s~s~-------dg~v---------~i---w  336 (626)
                      +|+.-. .+..|-.-++...++-+.+.  ....+.+++|.  | +..+++.++.       ||..         .+   .
T Consensus       144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~i  222 (638)
T 3sbq_A          144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAI  222 (638)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEE
T ss_pred             EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEEEEE
Confidence            444443 44567777777777766554  55678888886  5 6667777664       2221         11   1


Q ss_pred             eCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC---------------cEEEEEcCC-------Ccee------eeE
Q 006909          337 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---------------TCHFYKASG-------NDLK------LEK  388 (626)
Q Consensus       337 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg---------------~i~i~d~~~-------~~~~------~~~  388 (626)
                      |..+.++.-..........+...++|++.++.+.+.               .+.++++..       ++..      ...
T Consensus       223 D~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V  302 (638)
T 3sbq_A          223 DAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV  302 (638)
T ss_dssp             ETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred             cCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence            222222111111122333445567777777765432               355565421       1100      001


Q ss_pred             Eeecccc--c-------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-----------eee-ecCCCCCeEE
Q 006909          389 VDFHDRK--K-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----------KFK-GLPKSGSQMS  447 (626)
Q Consensus       389 ~~~~~~~--~-------~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-----------~~~-~~~~~~~v~~  447 (626)
                      +....+.  .       .-....-++..+|||...++++-.+.++.++|..+...           ... ...-.-....
T Consensus       303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH  382 (638)
T 3sbq_A          303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH  382 (638)
T ss_dssp             EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred             EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence            1110000  0       01134456889999966666667789999999763211           111 1113345677


Q ss_pred             EEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          448 ASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       448 ~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+|.++|.-..|---|..|.-|++...
T Consensus       383 t~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          383 TTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             EEECCCCceEeeeeecceEEEEeccHH
Confidence            899999955556668999999999753

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=80.59  E-value=42  Score=32.31  Aligned_cols=198  Identities=9%  Similarity=0.056  Sum_probs=106.9

Q ss_pred             cCCCeEEEEeCCCcEEEe---ccCC------CeeeEe---ecCCCCeEEEEEeeC--CCCEEEEEeCCCcEEEEeCCC--
Q 006909          277 SNSNYLLSCSMDKTVRMW---QVGC------NQCLNV---FDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCE--  340 (626)
Q Consensus       277 s~~~~l~s~s~d~~v~iw---d~~~------~~~~~~---~~~~~~v~~~~~~p~--~~~~l~s~s~dg~v~iwd~~~--  340 (626)
                      +....|+..+..|.+.-.   ++..      |..+..   +.....|.++...+.  ++.+++.++.+|.++-..+..  
T Consensus        48 ~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~  127 (323)
T 1wp5_A           48 NTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYK  127 (323)
T ss_dssp             ETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGC
T ss_pred             CCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhh
Confidence            344566666777765444   4422      232211   234455666543331  256789999999999887631  


Q ss_pred             ------CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCc
Q 006909          341 ------KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       341 ------~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                            +.........+.+..+........++..+.+|.+..+....-...-. ...........+..|.++...+++..
T Consensus       128 ~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~  207 (323)
T 1wp5_A          128 AQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDE  207 (323)
T ss_dssp             CSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTC
T ss_pred             hccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCc
Confidence                  11111112235555555555666788899999998888753211100 00000111112356777655444422


Q ss_pred             EEEEEeCCCcEEEEeCCc---------ceeeeeec-CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          414 RIMITSEDSKLRILDGVD---------VIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~~---------~~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .+++.+..|..+..++..         ....+... .....+..+....++..++..+..|.+....+..-
T Consensus       208 ~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i  278 (323)
T 1wp5_A          208 SIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDI  278 (323)
T ss_dssp             EEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGS
T ss_pred             EEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhc
Confidence            688888888888877542         12222211 12224554433344556677777888877777663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	626
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-23
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (249), Expect = 7e-24
 Identities = 57/311 (18%), Positives = 101/311 (32%), Gaps = 21/311 (6%)

Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 234
             +  H+  +  + F P    + S  ED  +++W   +     +                
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFD 68

Query: 235 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
                  S    + I    FQ  E                   N ++++S S DKT++MW
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 295 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVI 353
           +V    C+  F  H     +     D     S S D  VR+W V  K    +  + R V+
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 354 SAICYIPDGKGFIVGSITGTC--------HFYKASGNDLKLEKVDFHDRK-----KTSGN 400
             I + P+     +   TG+          F  +   D  ++  D              N
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 401 KITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHII 458
            + G+ F     + I+  ++D  LR+ D  +   +             S  F  T  +++
Sbjct: 249 WVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNA--HEHFVTSLDFHKTAPYVV 305

Query: 459 SIGDDCRVYVW 469
           +   D  V VW
Sbjct: 306 TGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.2 bits (209), Expect = 1e-18
 Identities = 47/270 (17%), Positives = 94/270 (34%), Gaps = 21/270 (7%)

Query: 86  NECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRK 145
            +   TL+G ++   Q +    +            +K    +     +       +    
Sbjct: 49  GDFERTLKGHTDSV-QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 107

Query: 146 PNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVV 205
                        +    K  E    Y  +    H+  +  ++ + DG  +AS   D  V
Sbjct: 108 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167

Query: 206 RIWHVTSV-----------AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254
           R+W V +               C S+  +  + S ++    +  K       ++      
Sbjct: 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227

Query: 255 QI------EESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD- 306
            I          L  L GH   V  + +     ++LSC+ DKT+R+W     +C+   + 
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
           H ++VT + F+     Y ++GS+D  V++W
Sbjct: 288 HEHFVTSLDFHK-TAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 40/270 (14%), Positives = 81/270 (30%), Gaps = 56/270 (20%)

Query: 260 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFN 317
               L GH+  V  + +    + ++S S D T+++W             H + V  + F+
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 318 PI-----------------------------------------DDNYFISGSIDGKVRIW 336
                                                      + ++ +S S D  +++W
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 337 GVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-------- 387
            V     V  +   R+ +  +    DG      S   T   +  +  + K E        
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 388 -KVDFHDRKK---TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG 443
             + +         S    +  + S      ++  S D  +++ D    +     +    
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 444 SQMSASFTTTGKHIISIGDDCRVYVWNYDE 473
                 F + GK I+S  DD  + VW+Y  
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKN 278

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 98.7 bits (244), Expect = 4e-23
 Identities = 57/304 (18%), Positives = 103/304 (33%), Gaps = 12/304 (3%)

Query: 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 230
           + T + ++ H   I+ + +  D R L S  +DG + IW   +               + A
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 231 KEGKIKFGKKKSSHVPVVIPD-EVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK 289
                 +           I + +  +      +EL GH G +    + + N +++ S D 
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 290 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWAD 348
           T  +W +   Q    F  H           D   F+SG+ D   ++W V E      +  
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 349 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408
               I+AIC+ P+G  F  GS   TC  +    +                   IT + FS
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-----ELMTYSHDNIICGITSVSFS 279

Query: 409 RDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV 466
           +   + ++   +D    + D +         G            T  G  + +   D  +
Sbjct: 280 KS-GRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCLGVTDDGMAVATGSWDSFL 336

Query: 467 YVWN 470
            +WN
Sbjct: 337 KIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 46/134 (34%)

Query: 162 KKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT 221
           +   +       +         I ++ FS  GR L +G +D    +W             
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--------- 301

Query: 222 DDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSN 280
                                                     L GH   V  L  + +  
Sbjct: 302 ------------------------------------ADRAGVLAGHDNRVSCLGVTDDGM 325

Query: 281 YLLSCSMDKTVRMW 294
            + + S D  +++W
Sbjct: 326 AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 37/265 (13%), Positives = 72/265 (27%), Gaps = 43/265 (16%)

Query: 251 DEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN 309
           D V +I+    + L GH   +  + W  +S  L+S S D  + +W       ++     +
Sbjct: 38  DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 97

Query: 310 -YVTCVQFNPIDDNYFISGSID--------------GKVRIWGVCEKRVVDWADVRDVIS 354
            +V    + P  +     G  +                 R        +     + D   
Sbjct: 98  SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157

Query: 355 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK------------- 401
                                 +     D+    +    R   SG               
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217

Query: 402 -----------ITGIQFSRDESQRIMITSEDSKLRI--LDGVDVIHKFKGLPKSGSQMSA 448
                      I  I F  +        S+D+  R+  L     +  +          S 
Sbjct: 218 CRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276

Query: 449 SFTTTGKHIISIGDDCRVYVWNYDE 473
           SF+ +G+ +++  DD    VW+  +
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALK 301

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.8 bits (226), Expect = 2e-20
 Identities = 54/330 (16%), Positives = 116/330 (35%), Gaps = 37/330 (11%)

Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 239
           H   +  +KFS DG YLA+G  +   +++ V+  +   +   D                 
Sbjct: 61  HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119

Query: 240 KK----------------SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL 283
                             +     +I     +  +  +      +       + + + L+
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179

Query: 284 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343
           S S D+TVR+W +   QC       + VT V  +P D  Y  +GS+D  VR+W      +
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239

Query: 344 VDWADV--------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 395
           V+  D         +D + ++ +  DG+  + GS+  +   +     + K +    +   
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 396 -----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQM-- 446
                    + +  +  +++  + I+  S+D  +   D      +   +G   S   +  
Sbjct: 300 CEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358

Query: 447 --SASFTTTGKHIISIGDDCRVYVWNYDEL 474
              +S         +   DC+  +W Y ++
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (183), Expect = 4e-15
 Identities = 39/170 (22%), Positives = 61/170 (35%), Gaps = 40/170 (23%)

Query: 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG 233
           ++    HK  ++++ F+ DG+ + SG  D  V++W++ +                     
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN--------------------- 285

Query: 234 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVR 292
                            D       +      GHK  VL +A + N  Y+LS S D+ V 
Sbjct: 286 ------------ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

Query: 293 MWQVGCNQCLNVFD-HHNYVTCVQFNPI-----DDNYFISGSIDGKVRIW 336
            W       L +   H N V  V          + N F +GS D K RIW
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 5e-14
 Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 26/269 (9%)

Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 238
           +    I ++ FSPDG++LA+G ED ++RIW + +          +    S          
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 239 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 298
              S    V I D         L    G       ++  +  Y+ + S+D+ VR+W    
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV--AVSPGDGKYIAAGSLDRAVRVWDSET 236

Query: 299 NQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV------------ 338
              +   D        H + V  V F   D    +SGS+D  V++W +            
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 339 -CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 397
                 V +   +D + ++    + +  + GS      F+     +  L  +  H     
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVI 354

Query: 398 SGNKITGIQFSRDESQRIMITSEDSKLRI 426
           S     G     +        S D K RI
Sbjct: 355 SVAVANGSSLGPE-YNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 8e-10
 Identities = 39/286 (13%), Positives = 83/286 (29%), Gaps = 76/286 (26%)

Query: 261 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-------------- 306
           L +   H   V  + +SN    L+   +KT ++++V     +                  
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 307 -----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYI-- 359
                   Y+  V F+P D  +  +G+ D  +RIW +  +++V      +          
Sbjct: 115 SSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173

Query: 360 -----------------------------------------PDGKGFIVGSITGTCHFYK 378
                                                     DGK    GS+      + 
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233

Query: 379 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD---------- 428
           +    L       ++      + +  + F+RD  Q ++  S D  +++ +          
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDS 292

Query: 429 --GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472
                   +   +      +S + T   ++I+S   D  V  W+  
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 25/152 (16%), Positives = 43/152 (28%), Gaps = 52/152 (34%)

Query: 152 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 211
           K   ++   NK       +         HK  + ++  + +  Y+ SG +D  V  W   
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 212 SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV 271
           S                                              +PL  L GH+  V
Sbjct: 339 S---------------------------------------------GNPLLMLQGHRNSV 353

Query: 272 LDLAWSNS-------NYLLSCSMDKTVRMWQV 296
           + +A +N        N   + S D   R+W+ 
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 1e-07
 Identities = 63/379 (16%), Positives = 118/379 (31%), Gaps = 51/379 (13%)

Query: 271 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI 325
           +LDL   +    L    +    ++     + ++V      DH + V CV+F+  D  Y  
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLA 78

Query: 326 SGSIDGKVRIWGVCEKRVV-----DWADVRDV--------------ISAICYIPDGKGFI 366
           +G  +   +++ V +  +V     D A  +D               I ++C+ PDGK   
Sbjct: 79  TGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 367 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426
            G+       +          +            +            +++  S D  +RI
Sbjct: 138 TGAEDRLIRIWD--------IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189

Query: 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 486
            D            + G    A     GK+I +   D  V VW+ +      +       
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE------TGFLVERL 243

Query: 487 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFS 546
             E+    G   +V       + +S+ S S  D S K  NL+ A    DS+  + G+   
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEV 302

Query: 547 NDGPCRG---SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGL 603
                +    S         +   + D      D +          + + V +++   G 
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362

Query: 604 -------VIVTAGCDGMIK 615
                  V  T   D   +
Sbjct: 363 SLGPEYNVFATGSGDCKAR 381

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (186), Expect = 1e-15
 Identities = 41/344 (11%), Positives = 99/344 (28%), Gaps = 54/344 (15%)

Query: 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW-------------HVTSVAASCKS 219
           + + ++ H   + T      G  + SG +D  +++W             H   V +S   
Sbjct: 8   SPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66

Query: 220 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS 279
                   ++           +  H        V  +     + + G +   L +    +
Sbjct: 67  DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126

Query: 280 ---------------------NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP 318
                                  ++S + D  V++W      CL+    H          
Sbjct: 127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQ 184

Query: 319 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 378
            D  + +SGS+D  +R+W V     +        +++          + G+   T   + 
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIW- 242

Query: 379 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKF 436
                  ++        +      + +   +     ++ +S+D  +++ D    + I   
Sbjct: 243 ------DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296

Query: 437 KGLPKSGSQ---MSASFTTTGKHIISIGDD----CRVYVWNYDE 473
             L   GS         + T         +     ++ V ++D 
Sbjct: 297 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 8e-11
 Identities = 28/248 (11%), Positives = 73/248 (29%), Gaps = 21/248 (8%)

Query: 260 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNP 318
             + L GH   V+       N ++S S D T+++W     +CL     H   V   Q   
Sbjct: 8   SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

Query: 319 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 378
             +      +            + +         +  +                      
Sbjct: 68  --NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK------------RVVSG 113

Query: 379 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD--GVDVIHKF 436
           +    L++  ++           +  ++  + + +R++  + D  +++ D      +H  
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173

Query: 437 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV 496
           +G       +       G H++S   D  + VW+ +      +   +   +      + +
Sbjct: 174 QGHTNRVYSLQFD----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI 229

Query: 497 SVAVQWPG 504
            V+     
Sbjct: 230 LVSGNADS 237

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 4/41 (9%)

Query: 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDG----VVRIW 208
             + E     G +W ++ S      A G  +G     + + 
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 1e-13
 Identities = 46/296 (15%), Positives = 89/296 (30%), Gaps = 16/296 (5%)

Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-----SVAASCKSFTDDGGFGSNAKEGK 234
           H   +  +  S   R++ +GG  G V++W ++     S  +       D    S      
Sbjct: 50  HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 235 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
                       + I D          +               +S    SC  D  + +W
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168

Query: 295 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 354
            +     +  F  H           D     +G +D  VR W + E R +   D    I 
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF 228

Query: 355 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414
           ++ Y P G+   VG  +                      +     + +  ++F+    + 
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHV--------NKPDKYQLHLHESCVLSLKFAYC-GKW 279

Query: 415 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470
            + T +D+ L                +S S +S   +   K+I++   D +  V+ 
Sbjct: 280 FVSTGKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 2e-12
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 265 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 323
           H H+  VL L ++    + +S   D  +  W+      +      + V     +  DD Y
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-DDKY 320

Query: 324 FISGSIDGKVRIWGV 338
            ++GS D K  ++ V
Sbjct: 321 IVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 1e-11
 Identities = 38/256 (14%), Positives = 74/256 (28%), Gaps = 10/256 (3%)

Query: 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 232
           +  +       I + K  PDG  L  GGE   + IW + +     K+          A  
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148

Query: 233 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 292
                    S      I       +    Q      G       ++   L +  +D TVR
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208

Query: 293 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352
            W +   + L   D  + +  + + P    +   G     V +  V +            
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267

Query: 353 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
           + ++ +   GK F+        + ++                +    + +     S D  
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--------FQSKESSSVLSCDISVD-D 318

Query: 413 QRIMITSEDSKLRILD 428
           + I+  S D K  + +
Sbjct: 319 KYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 47/133 (35%)

Query: 165 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 224
            +         ++  H+ C+ +LKF+  G++  S G+D ++  W                
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------ 296

Query: 225 GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 283
                                             + + +       VL    S +  Y++
Sbjct: 297 ---------------------------------GASIFQS-KESSSVLSCDISVDDKYIV 322

Query: 284 SCSMDKTVRMWQV 296
           + S DK   +++V
Sbjct: 323 TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 43/290 (14%), Positives = 72/290 (24%), Gaps = 47/290 (16%)

Query: 245 VPVVIPDEVFQIEESP--LQELH--GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ 300
            PV  P +       P   ++++   H   V  +  SN    +       V++W +    
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83

Query: 301 C------LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV------DWAD 348
                  L+  +  NY+   +  P D    I G     + IW +              A 
Sbjct: 84  NKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142

Query: 349 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408
               ++                      +  +         D       S +        
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPK--------------------------- 441
            D + R     E  +L+  D    I      P                            
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262

Query: 442 --SGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL-CFPSSKQKNSVRSC 488
                 +S  F   GK  +S G D  +  W          SK+ +SV SC
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 312

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 69.9 bits (169), Expect = 2e-13
 Identities = 26/314 (8%), Positives = 72/314 (22%), Gaps = 27/314 (8%)

Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 238
                I  ++   D +     G      +          + F      G+    G  + G
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNG 97

Query: 239 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYL-----------LSCSM 287
           K             V      P       +  + D   S+++                 +
Sbjct: 98  KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 157

Query: 288 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV--------C 339
            + + ++ +   +       +++     F+          S                   
Sbjct: 158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEV 216

Query: 340 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 399
             +      +    +    +P       G       + ++S  ++           ++S 
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276

Query: 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 459
              +        +       E   L   D      K   +    +      +   K ++ 
Sbjct: 277 LIYSVPVHGEF-AAYYQGAPEKGVLLKYDVKT--RKVTEV--KNNLTDLRLSADRKTVMV 331

Query: 460 IGDDCRVYVWNYDE 473
             DD ++Y +  ++
Sbjct: 332 RKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 212
           ++++   K  +  L+ S D + +    +DG +  + +  
Sbjct: 307 TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.7 bits (163), Expect = 5e-13
 Identities = 39/298 (13%), Positives = 79/298 (26%), Gaps = 9/298 (3%)

Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 234
           Q    H   I  L  S DG+ L S   +G +  W +++  ++           +  K   
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 235 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
                  S    + +        +S     +      L LA S    +   +  K + ++
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 295 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 354
             G              +CV  +       + G                     V     
Sbjct: 126 SHGKLTE---VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 355 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414
                 +   F+V +         +  N+        H    T             ++ R
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANN----FELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 415 IMITSEDSKLRI--LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470
           +   S D+ + +  ++             + S +++        I+S G D  +  WN
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.5 bits (121), Expect = 1e-07
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 261 LQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFN 317
            Q  +GH   +  L+ S +   L S   +  +  W +       VF   H   +T ++  
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 318 PIDDNYFISGSIDGKVRIWGVCEKRVVDW 346
              D + +S      +++       V   
Sbjct: 65  SKGDLFTVSWDDH--LKVVPAGGSGVDSS 91

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 8e-05
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 276 WSNSNYLLSCSMDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 332
             ++  L + S+D +V +W +     +  +    H            ++   +S   D  
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSN 291

Query: 333 VRIWGV 338
           ++ W V
Sbjct: 292 IKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 211
            AH           +   + S G+D  ++ W+V 
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 9e-13
 Identities = 29/315 (9%), Positives = 67/315 (21%), Gaps = 24/315 (7%)

Query: 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS------NAK 231
           QA K  I  +K  P    L     DG + ++     A +                     
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 232 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTV 291
                +       +  V        +     E +     +               + + +
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127

Query: 292 RMWQVGCNQCLNVFDH---HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV---- 344
                G         +         +     + +  I G  + +V+ + +          
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187

Query: 345 -DWADVRDVISAICYIPDGKGFIVGSITGTCHFY--------KASGNDLKLEKVDFHDRK 395
            +      +        + +G+   SI G               S           + + 
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247

Query: 396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK 455
                 +  I+FS    + +     D  +   + +    K K   K           +  
Sbjct: 248 TNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWN-LQTRKKIKNFAKFNEDSVVKIACSDN 305

Query: 456 HIISIGDDCRVYVWN 470
            +     D       
Sbjct: 306 ILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 32/254 (12%), Positives = 74/254 (29%), Gaps = 9/254 (3%)

Query: 261 LQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQV----GCNQCLNVFDHHNYVTCVQ 315
           +Q     K  + D+    + + LL  S D ++ +++          L    + + + C  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 316 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCH 375
           F    D     G++ G++    +            +    IC I       + + +    
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 376 FYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD----GVD 431
                  +     +   +    +      I      S R+++   +S+++         D
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 432 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF 491
                +   K   +  A      +       D RV V  +D+     +  K     C   
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 492 FSEGVSVAVQWPGI 505
             +  ++A     I
Sbjct: 244 NLKDTNLAYPVNSI 257

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 14/125 (11%), Positives = 36/125 (28%), Gaps = 5/125 (4%)

Query: 264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 323
                G V    + +     + S     R  ++         +    V  ++F+P    +
Sbjct: 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT----NLAYPVNSIEFSP-RHKF 265

Query: 324 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 383
             +   DG +  W +  ++ +      +  S +          + +   T     A    
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325

Query: 384 LKLEK 388
           ++L  
Sbjct: 326 IELNA 330

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.8 bits (161), Expect = 2e-12
 Identities = 40/308 (12%), Positives = 87/308 (28%), Gaps = 62/308 (20%)

Query: 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 243
           I    ++ D   +A    +  V I+  +                                
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-------------------------- 43

Query: 244 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCL 302
                            + EL  H G V  + W+ +SN +++C  D+   +W +      
Sbjct: 44  -----------------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86

Query: 303 NVFDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCEKR-----VVDWADVRDVISA 355
                       +      ++  F  GS    + I    ++            +R  + +
Sbjct: 87  PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 146

Query: 356 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES--- 412
           + + P+      GS    C  + A   +++          K    ++     S       
Sbjct: 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206

Query: 413 -------QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 465
                   R+   S DS + + D    +       ++   ++ +F T    + + G DC 
Sbjct: 207 VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA-GHDCF 265

Query: 466 VYVWNYDE 473
             ++ YD 
Sbjct: 266 PVLFTYDS 273

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 44/323 (13%), Positives = 88/323 (27%), Gaps = 29/323 (8%)

Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 234
            E++ H G +  + ++PD   + + G D    +W +                 +      
Sbjct: 45  HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104

Query: 235 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL----AWSNSNYLLSCSMDKT 290
               K        VI    F+ E       H  K     +       NS  L + S D  
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164

Query: 291 VRMWQVGCNQCLNVFDHHNYVTCVQF------------------NPIDDNYFISGSIDGK 332
            R++     +         + + + F                     + +     S D  
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224

Query: 333 VRIWGV-CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF 391
           V +     +  V   A     + A+ +I +      G       F   S           
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL 284

Query: 392 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT 451
              K++S   +T  +  ++  ++       +    LD    +HK      S   + +   
Sbjct: 285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS---LHK---NSVSQISVLSGGK 338

Query: 452 TTGKHIISIGDDCRVYVWNYDEL 474
                  + G D  + +W+   L
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 178 QAHKGCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSF 220
             HK  +  +     G+       + G DG + IW V S+ ++ K  
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 34/270 (12%), Positives = 70/270 (25%), Gaps = 9/270 (3%)

Query: 351 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410
           + IS   +  D     +       H Y+ SGN             K    ++TG+ ++ D
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE-----LKEHNGQVTGVDWAPD 62

Query: 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR--VYV 468
            S RI+    D    +        K   +    ++ +                    + +
Sbjct: 63  -SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 469 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE 528
             +++       +           S            G+        S      +     
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181

Query: 529 TAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCL 588
           T    +      +    S+ G       + A    +  V+ DS     D  ++       
Sbjct: 182 TPWGSKMPFGELMFESSSSCGWVH-GVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240

Query: 589 NNVDDVRAISATWGLVIVTAGCDGMIKTFH 618
           +    + A++      +V AG D     F 
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPVLFT 270

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 10/130 (7%)

Query: 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK 231
                + +    +  + F  +   +A+G  D    ++   S A              +++
Sbjct: 234 MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 292

Query: 232 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-----NSNYLLSCS 286
            G     + ++                +       HK  V  ++         +   +  
Sbjct: 293 RGLTARERFQNLDKKASSEGSA----AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 348

Query: 287 MDKTVRMWQV 296
           MD  + +W V
Sbjct: 349 MDGGMSIWDV 358

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 42/363 (11%), Positives = 91/363 (25%), Gaps = 78/363 (21%)

Query: 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW---------------------- 208
           + T+   +AH   I+++       +  S   DG +++W                      
Sbjct: 4   IATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 209 ---HVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 265
              HV  + A  +   +     + +  G + F +         +       E+  L +  
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF-----EKLDLLDSD 116

Query: 266 GHKGDVLDLAWSNS------NYLLSCSMDKTVRMWQV-------------------GCNQ 300
             K     L W  S      + L++  +  T  +W+                        
Sbjct: 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 301 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI-------WGVCEKRVVDWADVRDVI 353
             +      + T V  +        +G  +G V+I            +      +  + I
Sbjct: 177 VESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

Query: 354 SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR---- 409
            ++ + P G    +   + +         +             +S   +     S     
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294

Query: 410 ----DESQRIMITSEDSKLRILDGVD--VIHKFKG--LPKSGSQMSASFTTTGKHIISIG 461
               D  + +     D KLR  D      I             +   +    G  +   G
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 462 DDC 464
              
Sbjct: 355 VFD 357

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 37/298 (12%), Positives = 86/298 (28%), Gaps = 48/298 (16%)

Query: 172 YTSQEIQAHKGCIWTLK-FSPDGRYLASGGEDGVVRIWHVTS------------------ 212
           ++ Q I         +     D + + SG  D  ++IW   +                  
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 213 --------------------VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252
                                     +                      S    + + D 
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 253 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT 312
               + +  + L GH+  V  + + +  Y++S S D+T+++W     + +   + H    
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-- 179

Query: 313 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG 372
            +      D   +SGS D  +R+W +     +   +  + +       + +  + G+  G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-IVSGAYDG 238

Query: 373 TCHFYKASGNDLKLEKVDFHDRKKTSG--NKITGIQFSRDESQRIMITSEDSKLRILD 428
               +                 +       ++  +QF      +I+ +S D  + I D
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD 293

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 8e-10
 Identities = 29/201 (14%), Positives = 63/201 (31%), Gaps = 48/201 (23%)

Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK 236
           ++ H   + T     +  Y+ +G +D ++R++   +                        
Sbjct: 8   LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSIN------------------------ 42

Query: 237 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCS--MDKTVRMW 294
                                +  L +L GH G V  L +++   L+S S      V   
Sbjct: 43  ---------------------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 81

Query: 295 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 354
           + GC   +    +            +  Y ++GS D  + +W + ++  V          
Sbjct: 82  KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 141

Query: 355 AICYIPDGKGFIVGSITGTCH 375
            + + P+   + VG + G   
Sbjct: 142 LVFHTPEENPYFVGVLRGHMA 162

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 7e-09
 Identities = 43/356 (12%), Positives = 103/356 (28%), Gaps = 19/356 (5%)

Query: 264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN 322
           L GH   V+       NY+++ + DK +R++     + L     H   V  +++      
Sbjct: 8   LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG 65

Query: 323 YFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 379
             +SGS         I   C   V +  +       I    + K  + GS   T H +K 
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 380 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL 439
                  +  + HD             F       +      S    +  V   +    +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV-VSGSYDNTLI 184

Query: 440 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVA 499
               +QM   +  +G                       ++ +   + + E  ++     A
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244

Query: 500 VQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPA 559
           +      +++  + +++         N  +  +       S  + F        S +   
Sbjct: 245 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--E 302

Query: 560 EKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIK 615
            +  ++++             + +    L + D + +++     ++     DG   
Sbjct: 303 NQFNIYNLR----------SGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSF 348

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 7/74 (9%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 265 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDN 322
           + H        +  S+ +L    +    ++ +   + ++       + +  V F      
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KT 336

Query: 323 YFISGSIDGKVRIW 336
              +   DG+  + 
Sbjct: 337 LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 40/322 (12%), Positives = 94/322 (29%), Gaps = 39/322 (12%)

Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN----- 229
            ++  H G +W LK++  G  ++   +  V                 +      +     
Sbjct: 47  LQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 106

Query: 230 --------AKEGKIKF--------GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD 273
                   +++  +                     +     +     +  L GH   V  
Sbjct: 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-R 165

Query: 274 LAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 333
               + N ++S S D T+ +W V   +CL +   H           +    IS S+D  +
Sbjct: 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 225

Query: 334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 393
           RIW +    ++        +  +  + D       +      +             D+  
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD----------ANDYSR 275

Query: 394 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD---GVDVIHKFKGLPKSGSQMSASF 450
           +       ++ I      S  I+++  +++  I +   G  V         +    S +F
Sbjct: 276 KFSYHHTNLSAITTFYV-SDNILVSGSENQFNIYNLRSGKLVHANILK--DADQIWSVNF 332

Query: 451 TTTGKHIISIGDDCRVYVWNYD 472
                 + ++  D + ++   D
Sbjct: 333 KGKTL-VAAVEKDGQSFLEILD 353

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 4e-09
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 276 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK 332
           W +S    +   D T+R+W V  ++C+  +           V      +   IS S+DG 
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319

Query: 333 VRIW 336
           +  +
Sbjct: 320 LNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 1e-08
 Identities = 42/316 (13%), Positives = 79/316 (25%), Gaps = 32/316 (10%)

Query: 180 HKGCIWTLKFSPDGRYLASG-GEDGVVRIW---------------HVTSVAASCK-SFTD 222
            +     L + P    +A   G+   VR                 H +SV  + K S   
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 223 DGGF-GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY 281
              +  S  + GK+                    +E +   E     G + D++W     
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKES-------NSVEVNVKSEFQVLAGPISDISWDFEGR 128

Query: 282 L---LSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337
               +    D             L     H   +             ++   DG V  + 
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188

Query: 338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 397
               +            +     +        +       K S  D K  +   +     
Sbjct: 189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 248

Query: 398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTG- 454
              +      S  +SQ+      D+ +R+ D      + K+    +           TG 
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308

Query: 455 KHIISIGDDCRVYVWN 470
             IIS+  D  +  + 
Sbjct: 309 GRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 7e-06
 Identities = 34/231 (14%), Positives = 68/231 (29%), Gaps = 14/231 (6%)

Query: 161 NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 220
              K      +    E Q   G I  + +  +GR L   GE        ++  + +    
Sbjct: 95  TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE 154

Query: 221 TDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF---QIEESPLQELHGHKGDVLDLAWS 277
                   NA   K     +  +                  +  +  H     V D+ +S
Sbjct: 155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 214

Query: 278 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN-----PIDDNYFISGSIDGK 332
             +     ++    ++          +    +    VQ        +D   F +   D  
Sbjct: 215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 274

Query: 333 VRIWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 378
           +R+W V   + V     D   + +    +    +G+  I  S+ GT +FY+
Sbjct: 275 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYE 324

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 6e-08
 Identities = 28/311 (9%), Positives = 69/311 (22%), Gaps = 48/311 (15%)

Query: 182 GCIWTLKFSPDGRYLA----------SGGEDGVVRIWHVTS--VAASCKSFTDDGGFGSN 229
           G +     + DG ++A           G     V ++   +    A  +           
Sbjct: 47  GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT 106

Query: 230 AKEG-----------KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS- 277
                            +F    +  V  +      ++ + P                  
Sbjct: 107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR 166

Query: 278 -NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
             S   ++   + T  +                 +    ++       +  +  GK+   
Sbjct: 167 DGSLAKVAFGTEGTPEITHTEVFHPE----DEFLINHPAYSQ-KAGRLVWPTYTGKIHQI 221

Query: 337 GVCEKRVVDW-------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 383
            +                              + Y        +         +K +   
Sbjct: 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281

Query: 384 LKLEKVDFHDRKKT--SGNKITGIQFSRDESQRIMIT-SEDSKLRILDGVD--VIHKFKG 438
           + +      +R      G++I  I  S+DE   +    + D  L I D      +     
Sbjct: 282 VVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341

Query: 439 LPKSGSQMSAS 449
           L      ++ +
Sbjct: 342 LGHGPQVITTA 352

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (117), Expect = 3e-07
 Identities = 42/302 (13%), Positives = 79/302 (26%), Gaps = 29/302 (9%)

Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 234
           + I  H   I  L  +P    L SG  DG +  W  +S+     +               
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-------- 54

Query: 235 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
                   S              +      H         + +N  +    + D  + + 
Sbjct: 55  --------SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLIL 106

Query: 295 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 354
           Q      +     ++  + V  +       +      +V      E        +R   S
Sbjct: 107 QSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 166

Query: 355 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI---TGIQFSRDE 411
            I   P       G + G    Y     ++K  +  F   K  + +      G      E
Sbjct: 167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226

Query: 412 SQRIMITSEDSKLRILD---GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV 468
              +   S D+ + I      + +I             +  + T    ++S G D  +  
Sbjct: 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNA--HKDGVNNLLWETPST-LVSSGADACIKR 283

Query: 469 WN 470
           WN
Sbjct: 284 WN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 257 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 316
            +  L+ + GH   +  L  +    L+S S D  +  W           DH N +  +  
Sbjct: 2   HDEVLKTISGHNKGITALTVN---PLISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDN 54

Query: 317 NP 318
           + 
Sbjct: 55  SK 56

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 5e-06
 Identities = 17/132 (12%), Positives = 31/132 (23%), Gaps = 44/132 (33%)

Query: 165 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 224
                       I          +   +   +A+G  D  + I+ V              
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR------------ 246

Query: 225 GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLS 284
                                               ++ L+ HK  V +L W   + L+S
Sbjct: 247 --------------------------------PMKIIKALNAHKDGVNNLLWETPSTLVS 274

Query: 285 CSMDKTVRMWQV 296
              D  ++ W V
Sbjct: 275 SGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 7e-06
 Identities = 9/76 (11%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 265 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDN 322
                   +      + + + S+D  + ++ V    + +   + H + V  + +     +
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PS 270

Query: 323 YFISGSIDGKVRIWGV 338
             +S   D  ++ W V
Sbjct: 271 TLVSSGADACIKRWNV 286

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.1 bits (115), Expect = 7e-07
 Identities = 40/266 (15%), Positives = 76/266 (28%), Gaps = 18/266 (6%)

Query: 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT----SVAASCKSFTDDGGFGSN 229
           ++    H       K SP G Y ASG   G VRIW  T     +  +   F+      S 
Sbjct: 51  TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110

Query: 230 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK 289
             E K      +       +           L         V          +     + 
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170

Query: 290 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV-------RIWGVCEKR 342
                           +H  +V  V++NP    +  +G     V          GV E  
Sbjct: 171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 230

Query: 343 VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402
            +        +  + + PDG      S   T   +  +   +  + +    R +   ++ 
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRIE---DQQ 286

Query: 403 TGIQFSRDESQRIMITSEDSKLRILD 428
            GI +++     ++  S +  +  ++
Sbjct: 287 LGIIWTKQ---ALVSISANGFINFVN 309

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.2 bits (116), Expect = 8e-07
 Identities = 19/311 (6%), Positives = 46/311 (14%), Gaps = 68/311 (21%)

Query: 189 FSPDGRYLA----------SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 238
               G   A           G     V ++   +                          
Sbjct: 72  AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------------------- 106

Query: 239 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 298
                    +     F +              ++    S++  L             V  
Sbjct: 107 --LPIADIELPDAPRFSVGPRV---------HIIGNCASSACLLFFLFGSSAAAGLSVPG 155

Query: 299 NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICY 358
                +       +C   +P        GS    +    +                A   
Sbjct: 156 ASDDQLTKSA---SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212

Query: 359 IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 418
                      +            D+             + +      F     Q +   
Sbjct: 213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272

Query: 419 SEDSKLRILDGVDVIHKFKG-----------------LPKSGSQMSASFTTTGKH--IIS 459
                + IL                            +       +      G      +
Sbjct: 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332

Query: 460 IGDDCRVYVWN 470
                 + +++
Sbjct: 333 SAGTEVLDIYD 343

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 11/191 (5%), Positives = 37/191 (19%), Gaps = 22/191 (11%)

Query: 189 FSPDGRYLASGGEDGVVRIWHVTS-------VAASCKSFTDDG---------GFGSNAKE 232
            S      AS           V +        ++        G             +   
Sbjct: 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240

Query: 233 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 292
                      +      D       +  Q +   K     +  +  +     +  +   
Sbjct: 241 AGATMKAAIDGNESGRKADN---FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297

Query: 293 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY--FISGSIDGKVRIWGVCEKRVVDWADVR 350
                  Q      + +    +     D     + + +    + I+     +     ++ 
Sbjct: 298 SVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356

Query: 351 DVISAICYIPD 361
               ++    +
Sbjct: 357 KGPESLSVQNE 367

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 30/312 (9%), Positives = 71/312 (22%), Gaps = 45/312 (14%)

Query: 176 EIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 234
            I            +P GR   A+  +   +    + +                      
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---------------------- 65

Query: 235 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
            +   +     P      +F    SP  +                           V ++
Sbjct: 66  GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES-----PVRLELTHFEVQPTRVALY 120

Query: 295 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 354
                     F+    +T + +   D +       D  V         +V+   ++   +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDP--EAGTLVEDKPIQSWEA 177

Query: 355 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT------SGNKITGIQFS 408
                PD         +              ++  D    +           ++   +  
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237

Query: 409 RDESQRIMITSEDSKLRILDGVDVIHKF--------KGLPKSGSQMSASFTTTGKHIISI 460
             +          +K R     +V+  F        K +P   S  S + +T G  +   
Sbjct: 238 IMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297

Query: 461 GDDCRVYVWNYD 472
           G    +  ++ +
Sbjct: 298 GALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 212
                +++  S DG  +  GG  G +  +   +
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 16/211 (7%), Positives = 50/211 (23%), Gaps = 17/211 (8%)

Query: 280 NYLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
           +Y+L+ +    + +           + + D           P     + + +    +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 337 GVCEKRVVDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 390
            +     +   D+         +      PDGK   +                 ++   D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 391 FHDRK----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM 446
                      +  +IT + ++RD   ++     D  +   +   ++             
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDG-SKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 447 SASFTTTGKHIISIGDDCRVYVWNYDELCFP 477
                     + +  +   V    +      
Sbjct: 181 ---AQPDVLAVWNQHESSGVMATPFYTARKD 208

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 27/252 (10%), Positives = 57/252 (22%), Gaps = 27/252 (10%)

Query: 160 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS 219
           Q  +  +      + ++       I  L ++ DG  L   G D  V      ++      
Sbjct: 113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPI 172

Query: 220 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS 279
                                           +   +      E  G        A  + 
Sbjct: 173 -----------------------QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDI 209

Query: 280 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339
           +     +    +    +   +          V                     +  + + 
Sbjct: 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA-FGAYNVLESFDLE 268

Query: 340 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 399
           +   +    +     ++    DG    +G   G    Y A   + K  +VD       S 
Sbjct: 269 KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE-KKGQVDLPGNASMSL 327

Query: 400 NKITGIQFSRDE 411
              +   F+RDE
Sbjct: 328 A--SVRLFTRDE 337

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.4 bits (114), Expect = 2e-06
 Identities = 19/205 (9%), Positives = 63/205 (30%), Gaps = 13/205 (6%)

Query: 281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340
           + ++      + +      + + V D    V   + +     Y +    D ++ +  +  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWA 92

Query: 341 KRVVDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 394
           K     A++      R V S+     + +  I G+                 + V     
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 395 -----KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSA 448
                      ++  I  S +  + I+   E  K+ +++  D+ +     +  +      
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212

Query: 449 SFTTTGKHIISIGDDCRVYVWNYDE 473
            + ++ ++ ++  ++         +
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSK 237

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 16/156 (10%), Positives = 47/156 (30%), Gaps = 3/156 (1%)

Query: 319 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 378
           + + + ++    G++ +     K++V   D    +        G+  +V           
Sbjct: 30  LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMID 89

Query: 379 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG 438
                 +  KV        + +  +      ++   I       +  I+DG  +  K   
Sbjct: 90  --LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147

Query: 439 LPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDE 473
             +  +  + ++    +   I    +   ++ N  E
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 29/285 (10%), Positives = 60/285 (21%), Gaps = 39/285 (13%)

Query: 180 HKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHV-----------------TSVAASCKSFT 221
            K    T   +PD R         G +    +                    +    + +
Sbjct: 38  DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97

Query: 222 DDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY 281
            DG           +         P +         E+           V  +  ++   
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 282 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341
           L     D       V   +        N+       P    ++   S   +  +     +
Sbjct: 158 LYVAGPDIYK--MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215

Query: 342 RVVDWADVRDVISAIC-YIPDGKGFIVGSITGTCHF-------------YKASGNDLKLE 387
              D  D             D K     +                     +  G   +L 
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA 275

Query: 388 KVDFHDRKKTS----GNKITGIQFSRDESQRIMITSEDSKLRILD 428
           K D   RK        +    + F +    ++ +    + L + +
Sbjct: 276 KYDLKQRKLIKAANLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFN 319

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 212
                + + F   G  L  GG    + +++  +
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 7e-04
 Identities = 37/320 (11%), Positives = 78/320 (24%), Gaps = 38/320 (11%)

Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA----KEGKIKF-GKKK 241
                   Y+        + +  V S     KS      FG        + +  +     
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 242 SSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCN 299
              +  +  D       + L  +       +   A S +   + +               
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 300 QC---------------LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW-GVCEKRV 343
                            +  F     V  ++    D + +++G    K+ +  G     +
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA-ADDGSLYVAGPDIYKMDVKTGKYTVAL 179

Query: 344 VDWADVRDVISAICYI---PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK--KTS 398
                 R   SA   +   P        S+  T   +K    D     + +        +
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239

Query: 399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF--------KGLPKSGSQMSASF 450
           G   T       E     + S     +I   ++ + K+        K      +    +F
Sbjct: 240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAF 299

Query: 451 TTTGKHIISIGDDCRVYVWN 470
              G  +   G    + V+N
Sbjct: 300 DKKGDKLYLGGTFNDLAVFN 319

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 3/105 (2%), Positives = 25/105 (23%)

Query: 276 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335
             +     +  +        +   +                     +      +  ++  
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAK 276

Query: 336 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 380
           + + +++++  A++      + +   G    +G        +   
Sbjct: 277 YDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 33/327 (10%), Positives = 68/327 (20%), Gaps = 63/327 (19%)

Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 234
             +      +   + S  GRYL   G DG V +  +                       +
Sbjct: 56  TVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWM--------------KEPTTVAE 100

Query: 235 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL--SCSMDKTVR 292
           IK G                             +           +              
Sbjct: 101 IKIGS--------------------------EARSIETSKMEGWEDKYAIAGAYWPPQYV 134

Query: 293 MWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCEK---RVVDWAD 348
           +      +   +           +++P      I  S      I  V E     +VD+ D
Sbjct: 135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194

Query: 349 ----------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 398
                         +         + FI  +             + KL  ++    +   
Sbjct: 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANAR-NKLVVIDTKEGKLVAIEDTGGQTPH 253

Query: 399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII 458
             +                   D  + ++      H       +   + +     G  + 
Sbjct: 254 PGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP----DNAWKILDSFPALGGGSLF 309

Query: 459 SIGDDCRVYVWNYDELCFPSSKQKNSV 485
                   Y++  D    P ++   SV
Sbjct: 310 IKTHPNSQYLY-VDATLNPEAEISGSV 335

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 14/166 (8%), Positives = 47/166 (28%), Gaps = 14/166 (8%)

Query: 319 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 378
           +++ + ++    G++ +       +    D    +        G+   V    G  +   
Sbjct: 30  LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMID 89

Query: 379 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG 438
                 +   V        + +  T      ++   I       +  I+DG  +  K   
Sbjct: 90  L--WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147

Query: 439 LPKSGSQMSASFTTTGKH------------IISIGDDCRVYVWNYD 472
             +  +     +    +             I+++ +  ++ + +Y 
Sbjct: 148 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 7/95 (7%)

Query: 276 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335
            + +          TV M   G N+             +   P     +++ S    V +
Sbjct: 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSV 270

Query: 336 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI 370
                  +     V          P   G  +GSI
Sbjct: 271 IDTATNTITATMAVGKN-------PYASGQFIGSI 298

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 29/275 (10%), Positives = 68/275 (24%), Gaps = 30/275 (10%)

Query: 173 TSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHV-------------------TS 212
           T  ++    G +  +  SPD RYL      +  V  + +                   T 
Sbjct: 28  TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH 87

Query: 213 VAAS-----CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGH 267
           ++           + + G  S  +               +          ++    +   
Sbjct: 88  ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL 147

Query: 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 327
           K D + L   + +  L       V   +    + +    +  Y  CV       + +   
Sbjct: 148 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 207

Query: 328 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 387
              G +      +    +++D R              +           +  S +   L 
Sbjct: 208 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 267

Query: 388 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 422
           K  F      +  +  G        + ++   + S
Sbjct: 268 KEGFQ----PTETQPRGFNVDHSG-KYLIAAGQKS 297

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	626
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.7
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.55
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.45
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.29
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.25
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.2
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.15
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.1
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.07
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.05
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.0
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.99
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.89
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.89
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.88
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.85
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.82
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.81
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.72
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.61
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.52
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.48
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.46
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.23
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.1
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.9
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.69
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.44
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.32
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.04
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.9
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.85
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.82
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.77
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	95.77
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.61
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.44
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.4
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.24
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.17
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.1
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.73
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.39
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.27
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.02
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.82
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.4
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.27
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.15
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.29
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.21
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.47
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.6
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	89.52
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.44
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.17
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.16
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.14

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.3e-36  Score=296.58  Aligned_cols=254  Identities=20%  Similarity=0.379  Sum_probs=219.3

Q ss_pred             ccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909          168 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  247 (626)
Q Consensus       168 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (626)
                      .+......+|+||+++|++|+|+|++++||||+.||+|+|||+.+                                   
T Consensus         4 ~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~-----------------------------------   48 (317)
T d1vyhc1           4 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-----------------------------------   48 (317)
T ss_dssp             CCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-----------------------------------
T ss_pred             CCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------------------------------
Confidence            344555678999999999999999999999999999999999987                                   


Q ss_pred             ecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEE
Q 006909          248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~  325 (626)
                                .+.+.++.+|...|.+++|+|++ .+++++.++.+.+|+.........+ .|...+.++.++| +++.++
T Consensus        49 ----------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  117 (317)
T d1vyhc1          49 ----------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIV  117 (317)
T ss_dssp             ----------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEE
T ss_pred             ----------CCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccC-CCceEE
Confidence                      45577888999999999999988 8899999999999999888777666 4888999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909          326 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       326 s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      +++.|+.+++||+++++... +..+...+.+++|+|++++|++++.|+.|++|++.+...... +      ..+...+.+
T Consensus       118 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~-~------~~~~~~i~~  190 (317)
T d1vyhc1         118 SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-L------REHRHVVEC  190 (317)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-E------CCCSSCEEE
T ss_pred             eeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEE-E------ecCCCCceE
Confidence            99999999999999877654 567889999999999999999999999999999988765432 1      123467888


Q ss_pred             EEEcCCC-------------------CcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCcc
Q 006909          405 IQFSRDE-------------------SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  465 (626)
Q Consensus       405 l~~s~~~-------------------~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~  465 (626)
                      +.|+|++                   ..++++++.|+.|++||..+.........|...|.+++|+|++++|++|+.||.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  270 (317)
T d1vyhc1         191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT  270 (317)
T ss_dssp             EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred             EEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCe
Confidence            8887753                   147899999999999998876665555568899999999999999999999999


Q ss_pred             EEEEECCCC
Q 006909          466 VYVWNYDEL  474 (626)
Q Consensus       466 I~iwd~~~~  474 (626)
                      |++||+.++
T Consensus       271 i~iwd~~~~  279 (317)
T d1vyhc1         271 LRVWDYKNK  279 (317)
T ss_dssp             EEEECCTTS
T ss_pred             EEEEECCCC
Confidence            999998764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-35  Score=302.86  Aligned_cols=312  Identities=17%  Similarity=0.262  Sum_probs=234.6

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      +|++.|+||+|||||++||+|+ |++|+|||+.++.............                           .....
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~---------------------------~~~~~  111 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------------KDPEN  111 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccc---------------------------ccccc
Confidence            7999999999999999999987 8999999998865533221110000                           00001


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      .......+|...|++++|+|++ +|++|+.||+|++||...++.+..+. |...|.++++++ ++..+++++.++.+++|
T Consensus       112 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~  190 (388)
T d1erja_         112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIW  190 (388)
T ss_dssp             -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             cccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccc-ccccccccccceeeeee
Confidence            1223445788999999999998 89999999999999999998888775 899999999999 99999999999999999


Q ss_pred             eCCCCeEEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          337 GVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       337 d~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      |..+........+.....++.+.+ ++++|++|+.||.|++|+..+................|...|++++|+|++ .+|
T Consensus       191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l  269 (388)
T d1erja_         191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSV  269 (388)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEE
T ss_pred             eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC-CEE
Confidence            999988877777766777777766 789999999999999999988765443222222234567899999999997 799


Q ss_pred             EEEeCCCcEEEEeCCcce------------eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909          416 MITSEDSKLRILDGVDVI------------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  483 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~~~~------------~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  483 (626)
                      ++++.|+.|++||+....            .......|...|.+++|+|++++|++|+.||.|++||+.++...      
T Consensus       270 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~------  343 (388)
T d1erja_         270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL------  343 (388)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE------
T ss_pred             EEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE------
Confidence            999999999999975321            12233457889999999999999999999999999999875211      


Q ss_pred             CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCC
Q 006909          484 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP  563 (626)
Q Consensus       484 ~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~  563 (626)
                         .... .+.+.+.+++++                                     ....|+||+.++++++. |++|+
T Consensus       344 ---~~l~-~H~~~V~~~~~~-------------------------------------~~~~~spd~~~l~s~s~-Dg~I~  381 (388)
T d1erja_         344 ---LMLQ-GHRNSVISVAVA-------------------------------------NGSSLGPEYNVFATGSG-DCKAR  381 (388)
T ss_dssp             ---EEEE-CCSSCEEEEEEC-------------------------------------SSCTTCTTCEEEEEEET-TSEEE
T ss_pred             ---EEEe-CCCCCEEEEEEe-------------------------------------cCcccCCCCCEEEEEeC-CCEEE
Confidence               0000 122333344332                                     23458899999999988 89999


Q ss_pred             CCCcc
Q 006909          564 LWDVT  568 (626)
Q Consensus       564 vwd~~  568 (626)
                      +|++.
T Consensus       382 iW~~~  386 (388)
T d1erja_         382 IWKYK  386 (388)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            99875

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-35  Score=293.33  Aligned_cols=286  Identities=13%  Similarity=0.204  Sum_probs=229.5

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .+++ +|...|+|++|+|+|++||||+ ||.|+|||+.+.....                                    
T Consensus        45 ~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~------------------------------------   86 (337)
T d1gxra_          45 INTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS------------------------------------   86 (337)
T ss_dssp             EEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS------------------------------------
T ss_pred             EEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc------------------------------------
Confidence            3444 7999999999999999999997 8999999998632210                                    


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC--eeeEee-cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~--~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                          ........+|.+.|.+++|+|++ +|++|+.|++|++||+...  +....+ .|...+.+++|+| ++.++++++.
T Consensus        87 ----~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~  161 (337)
T d1gxra_          87 ----PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCS  161 (337)
T ss_dssp             ----CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEET
T ss_pred             ----eeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence                11123445799999999999997 8999999999999998754  344444 4788999999999 9999999999


Q ss_pred             CCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          330 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      |+.|++|++.++++.. ...+...|.+++|++++..+++++.||.+++||+++.+... ...       +...|++++|+
T Consensus       162 d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~-~~~-------~~~~i~~l~~~  233 (337)
T d1gxra_         162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ-QHD-------FTSQIFSLGYC  233 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEE-------CSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccceeec-ccc-------cccceEEEEEc
Confidence            9999999999887654 55678999999999999999999999999999998876432 121       24789999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccce
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC  488 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  488 (626)
                      |++ .++++++.|+.|++||...... +....|...|.+++|+|++++|++++.||.|++||+.++....          
T Consensus       234 ~~~-~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~----------  301 (337)
T d1gxra_         234 PTG-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF----------  301 (337)
T ss_dssp             TTS-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE----------
T ss_pred             ccc-cccceecccccccccccccccc-ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEE----------
Confidence            997 7999999999999999875543 3445588999999999999999999999999999998763221          


Q ss_pred             eeeccCCcEEEEecCCCCcccccccCCCccccCccccc
Q 006909          489 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  526 (626)
Q Consensus       489 ~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~  526 (626)
                       .+...+.+.+++|+|++..|+..+.+   +.+.+|+.
T Consensus       302 -~~~~~~~v~~~~~s~d~~~l~t~s~D---~~I~vWdl  335 (337)
T d1gxra_         302 -QSKESSSVLSCDISVDDKYIVTGSGD---KKATVYEV  335 (337)
T ss_dssp             -EEECSSCEEEEEECTTSCEEEEEETT---SCEEEEEE
T ss_pred             -EccCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEE
Confidence             12234566777888888777654443   44666764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-34  Score=288.94  Aligned_cols=249  Identities=20%  Similarity=0.376  Sum_probs=209.2

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      .+...++|+||++.|++|+|+|++++||||+.||+|+|||+.+                                     
T Consensus        44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~-------------------------------------   86 (340)
T d1tbga_          44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT-------------------------------------   86 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-------------------------------------
T ss_pred             ceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccc-------------------------------------
Confidence            3456678999999999999999999999999999999999987                                     


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee----eEe--------------------
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----LNV--------------------  304 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~----~~~--------------------  304 (626)
                              ...+..+.+|...|.+++|+|++ ++++|+.|+.+++|+......    ...                    
T Consensus        87 --------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (340)
T d1tbga_          87 --------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV  158 (340)
T ss_dssp             --------TEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEE
T ss_pred             --------ceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccccccc
Confidence                    34467788899999999999987 899999999999998643211    000                    


Q ss_pred             ----------------------ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeC
Q 006909          305 ----------------------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPD  361 (626)
Q Consensus       305 ----------------------~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~  361 (626)
                                            ..+...+....+.+ ...++++|+.|+.|++||+++++... +..|...|++++|+|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~  237 (340)
T d1tbga_         159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN  237 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccceeEeeecccc-ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCC
Confidence                                  01344567777777 88899999999999999999888664 5678999999999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCC
Q 006909          362 GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK  441 (626)
Q Consensus       362 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  441 (626)
                      +++|++|+.||.|++|++........ ..    ...+...|++++|+|++ .+|++|+.||.|++||+.+.........|
T Consensus       238 ~~~l~s~s~d~~i~~~~~~~~~~~~~-~~----~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~H  311 (340)
T d1tbga_         238 GNAFATGSDDATCRLFDLRADQELMT-YS----HDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGH  311 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEE-EC----CTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             CCEEEEEeCCCeEEEEeecccccccc-cc----cccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCcEEEEEcCC
Confidence            99999999999999999987765332 11    22334789999999997 79999999999999998866555555568


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          442 SGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       442 ~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                      ...|++++|+|++++|++|+.||.|+|||
T Consensus       312 ~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            89999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-34  Score=289.89  Aligned_cols=320  Identities=17%  Similarity=0.266  Sum_probs=233.5

Q ss_pred             ccccccccCcE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          174 SQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       174 ~~~l~~H~~~V-~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      ..+|+||.+.| +|++|  +|++||||+.||+|+|||+.+                                        
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~----------------------------------------   42 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------------------   42 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTT----------------------------------------
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCC----------------------------------------
Confidence            46789999886 66655  688999999999999999987                                        


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEEEeC
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSI  329 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~s~  329 (626)
                           .+++.++.+|.+.|++++|+|+++|++|+.|++|++|++..........   +........+.+ ++.++++++.
T Consensus        43 -----~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  116 (355)
T d1nexb2          43 -----KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSR  116 (355)
T ss_dssp             -----TEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET-TEEEEEEEET
T ss_pred             -----CcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccccccccccccccccc-ccceeeeecC
Confidence                 3457888999999999999998999999999999999999988877664   333445566677 8889999999


Q ss_pred             CCcEEEEeCCCCeEEEeccC----------------------CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909          330 DGKVRIWGVCEKRVVDWADV----------------------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  387 (626)
Q Consensus       330 dg~v~iwd~~~~~~~~~~~~----------------------~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~  387 (626)
                      |+.|++||+.+.........                      ........+.++++.++++..|+.+++||+.+.+....
T Consensus       117 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  196 (355)
T d1nexb2         117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI  196 (355)
T ss_dssp             TSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceee
Confidence            99999999987543321100                      00112234667889999999999999999987764322


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909          388 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  467 (626)
Q Consensus       388 ~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~  467 (626)
                       .      ..+...+.++.|+|++ .++++++.|+.|++||..+.........|...|.+++|+  +++|++++.||.|+
T Consensus       197 -~------~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~  266 (355)
T d1nexb2         197 -L------SGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIR  266 (355)
T ss_dssp             -E------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEE
T ss_pred             -e------eccccccccccccccc-eeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccc
Confidence             1      1224678999999997 799999999999999988766666666688999999986  57999999999999


Q ss_pred             EEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccC-Ccccc
Q 006909          468 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSL-GSWFS  546 (626)
Q Consensus       468 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~s  546 (626)
                      +||+.+.....           .++.                                            ..+. ..+++
T Consensus       267 iwd~~~~~~~~-----------~~~~--------------------------------------------~~~~~~~~~~  291 (355)
T d1nexb2         267 GWDANDYSRKF-----------SYHH--------------------------------------------TNLSAITTFY  291 (355)
T ss_dssp             EEETTTCCEEE-----------EEEC--------------------------------------------TTCCCCCEEE
T ss_pred             cccccccceec-----------cccc--------------------------------------------CCceEEEEEc
Confidence            99987641100           0000                                            0011 12456


Q ss_pred             CCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEecCCceEeeee
Q 006909          547 NDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH  618 (626)
Q Consensus       547 ~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~  618 (626)
                      ++++++++++  |+.|++||+.++.          ........|.+.+.+++......|++++.||+++||-
T Consensus       292 ~~~~~l~~g~--d~~i~vwd~~tg~----------~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         292 VSDNILVSGS--ENQFNIYNLRSGK----------LVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             ECSSEEEEEE--TTEEEEEETTTCC----------BCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEE
T ss_pred             CCCCEEEEEe--CCEEEEEECCCCC----------EEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEE
Confidence            7777666654  6899999999882          1111223344444433332245788899999987764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-33  Score=282.19  Aligned_cols=258  Identities=19%  Similarity=0.251  Sum_probs=207.0

Q ss_pred             cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909          169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  248 (626)
Q Consensus       169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (626)
                      ......+.+.+|++.|++++|+|+|++||+|+.||+|+|||+.+...                                 
T Consensus        46 ~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~---------------------------------   92 (311)
T d1nr0a1          46 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---------------------------------   92 (311)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------------------------------
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc---------------------------------
Confidence            34455667789999999999999999999999999999999987321                                 


Q ss_pred             cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeC--CCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCC-E
Q 006909          249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN-Y  323 (626)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~--d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~-~  323 (626)
                                .....+.+|...|.+++|+|++ +|++++.  +..++||++.+++....+. |...|++++|+| +++ .
T Consensus        93 ----------~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~  161 (311)
T d1nr0a1          93 ----------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFR  161 (311)
T ss_dssp             ----------CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCE
T ss_pred             ----------ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccc-cceee
Confidence                      1234577899999999999988 7777775  4569999999998887774 888999999999 665 5


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          324 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       324 l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      |++|+.|+.|++||+++++... ...|...|+++.|+|+++++++++.||.+++||...................|...|
T Consensus       162 l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V  241 (311)
T d1nr0a1         162 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  241 (311)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             ecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence            8899999999999999877655 557789999999999999999999999999999988765433212222344567899


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEeCCccee--eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      ++++|+|++ ++|++|+.||.|+|||..+...  .+..+ +......+.+.+++++|++++.||.|++||.+
T Consensus       242 ~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~-~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         242 FGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECC-SSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cccccCCCC-CEEEEEeCCCeEEEEECCCCcEEEEEECC-CCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            999999997 7999999999999999875543  33332 12122334444556789999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.5e-35  Score=297.53  Aligned_cols=249  Identities=17%  Similarity=0.275  Sum_probs=202.3

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      +.++|+|++|+|||++||+|+.||.|+|||+.+++.                                           .
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-------------------------------------------~   42 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------------------------------V   42 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------------------------------E
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-------------------------------------------E
Confidence            357899999999999999999999999999876321                                           2


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      .+..+.+|.++|++++|+|++ +|++|+.|++|+|||+.++.....+   .|...|++++|+| +++.|++|+.|++|++
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i  121 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISI  121 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEE
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc-ccccceeecccCccee
Confidence            356788999999999999987 8999999999999999877655443   4788999999999 9999999999999999


Q ss_pred             EeCCCCeE-----EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEE-----------eeccccccCC
Q 006909          336 WGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV-----------DFHDRKKTSG  399 (626)
Q Consensus       336 wd~~~~~~-----~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~-----------~~~~~~~~~~  399 (626)
                      |++.....     .....|...|.+++|+|++++|++|+.||.+++|+...........           ........|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (371)
T d1k8kc_         122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  201 (371)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             eeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCcc
Confidence            98765431     2245678899999999999999999999999999986543211100           0011123456


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ..|.+++|+|++ .+|++++.|+.|++||............|..+|.+++|+|++++|++|+ |+.+++|..+..
T Consensus       202 ~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~  274 (371)
T d1k8kc_         202 GWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSA  274 (371)
T ss_dssp             SCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred             CcEEEEEeeccc-ccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence            789999999998 7899999999999999886655555556888999999999998888765 777777776553

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-33  Score=279.86  Aligned_cols=242  Identities=21%  Similarity=0.345  Sum_probs=213.2

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      ...+|++.|++++|+|+|++|++|+.||+|++||+....                                         
T Consensus        92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~-----------------------------------------  130 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-----------------------------------------  130 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------------------------------------
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc-----------------------------------------
Confidence            345899999999999999999999999999999987521                                         


Q ss_pred             ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                        ......+.+|...|.+++|+|++ ++++++.|+.|++|++.++++..... |...|.+++|++ ++..+++++.|+.|
T Consensus       131 --~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v  207 (337)
T d1gxra_         131 --PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTV  207 (337)
T ss_dssp             ---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             --ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence              12345677899999999999987 89999999999999999998887764 889999999999 99999999999999


Q ss_pred             EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      ++||+++++.+....+...|.+++|+|+++.+++|+.||.+++||++......        ...|...|++++|+|++ .
T Consensus       208 ~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------~~~~~~~i~~v~~s~~g-~  278 (337)
T d1gxra_         208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ--------LHLHESCVLSLKFAYCG-K  278 (337)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE--------ECCCSSCEEEEEECTTS-S
T ss_pred             cccccccceeecccccccceEEEEEcccccccceecccccccccccccccccc--------ccccccccceEEECCCC-C
Confidence            99999999998888999999999999999999999999999999998776432        12345789999999998 7


Q ss_pred             EEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          414 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      +|++++.|+.|++||..+....... .|...|.+++|+|++++|++|+.||+|+|||+
T Consensus       279 ~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         279 WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999998765544443 36789999999999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.2e-33  Score=275.02  Aligned_cols=278  Identities=18%  Similarity=0.193  Sum_probs=207.0

Q ss_pred             cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcce------------eeeecCCCCCccCCCCCeeeecCC
Q 006909          173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS------------CKSFTDDGGFGSNAKEGKIKFGKK  240 (626)
Q Consensus       173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  240 (626)
                      +.++++||+++|++++|+|+|++||||+.||+|++||+.++...            +..+.+++.+.....++.+.++..
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEecc
Confidence            46788999999999999999999999999999999999876543            223333333333333333333222


Q ss_pred             CCCCceeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCC
Q 006909          241 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID  320 (626)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~  320 (626)
                      ....            ..........|...+.+++|++++.+++++.++.+++|+...   .........+.+++|+| +
T Consensus        84 ~~~~------------~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~s~-~  147 (299)
T d1nr0a2          84 GGSG------------VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK---LTEVPISYNSSCVALSN-D  147 (299)
T ss_dssp             SSSS------------SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE---EEEEECSSCEEEEEECT-T
T ss_pred             CCcc------------cccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccc-c
Confidence            1110            011223344678889999999998666666778999998542   22333556789999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEE--EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccC
Q 006909          321 DNYFISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  398 (626)
Q Consensus       321 ~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  398 (626)
                      +++|++|+.||.|++||+++++..  ....|...|++++|+|++++|++++.++.|++||+.+........    ....|
T Consensus       148 ~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~----~~~~h  223 (299)
T d1nr0a2         148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN----SWTFH  223 (299)
T ss_dssp             SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC----CCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccc
Confidence            999999999999999999887654  356788999999999999999999999999999998765433211    12345


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeeeeecC-CCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~-~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      ...|++++|+|++ .+|++++.|+.|++||+...  ........ +...+..+. ++++++|++++.|++|++||+.
T Consensus       224 ~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         224 TAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccc-cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEEecc
Confidence            6899999999998 79999999999999997743  22233222 344566554 4678899999999999999984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-33  Score=286.50  Aligned_cols=295  Identities=19%  Similarity=0.274  Sum_probs=220.9

Q ss_pred             eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-------------------cCCCCeEEEEEeeCCC
Q 006909          262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-------------------DHHNYVTCVQFNPIDD  321 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-------------------~~~~~v~~~~~~p~~~  321 (626)
                      ....+|++.|++++|+|+| +|++|+ |++|+|||+.+++.+..+                   .|...|++++|+| ++
T Consensus        56 ~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~  133 (388)
T d1erja_          56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DG  133 (388)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TS
T ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CC
Confidence            3444799999999999998 777765 899999999988877654                   2556799999999 99


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          322 NYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      ++|++|+.||.|++||...++... ...|...|.++++++++..+++++.++.+++||..+....... ..       ..
T Consensus       134 ~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~-------~~  205 (388)
T d1erja_         134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SI-------ED  205 (388)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-EC-------SS
T ss_pred             Ccceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccc-cc-------cc
Confidence            999999999999999999877654 5668999999999999999999999999999999876553321 11       14


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeee-------ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~-------~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      ...++.+.+..+.+|++++.|+.|++||..+......       ...|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus       206 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~  285 (388)
T d1erja_         206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  285 (388)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccC
Confidence            5666777765458999999999999999875433222       134678999999999999999999999999999987


Q ss_pred             CCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCccc
Q 006909          474 LCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG  553 (626)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  553 (626)
                      ..........         ..+....                                ....+...+..++|+|+|++++
T Consensus       286 ~~~~~~~~~~---------~~~~~~~--------------------------------~~~~~~~~v~~~~~s~~~~~l~  324 (388)
T d1erja_         286 ANNKSDSKTP---------NSGTCEV--------------------------------TYIGHKDFVLSVATTQNDEYIL  324 (388)
T ss_dssp             ----------------------CEEE--------------------------------EEECCSSCEEEEEECGGGCEEE
T ss_pred             Cccccccccc---------cccceee--------------------------------ecccccceEEEEEECCCCCEEE
Confidence            5221111000         0000000                                0123445678889999999999


Q ss_pred             ccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccc--------ccccccceEEEEecCCceEeeeeec
Q 006909          554 SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--------AISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       554 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                      +++. |+.|++||+.++           ++......|.+.+.        .+++ +|.+|||||.||+|++|++.
T Consensus       325 sg~~-dg~i~vwd~~~~-----------~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         325 SGSK-DRGVLFWDKKSG-----------NPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEET-TSEEEEEETTTC-----------CEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred             EEeC-CCEEEEEECCCC-----------cEEEEEeCCCCCEEEEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence            9988 799999999987           22333334444332        2334 89999999999999999973

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.8e-32  Score=271.69  Aligned_cols=241  Identities=16%  Similarity=0.211  Sum_probs=201.6

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909          179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  258 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (626)
                      .+.+.+.+++++|+|+.||.++ ++.|.+|++.+                                             .
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~---------------------------------------------~   48 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS---------------------------------------------L   48 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC---------------------------------------------S
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC---------------------------------------------C
Confidence            4566778899999999999986 56799999987                                             3


Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE--ee-cCCCCeEEEEEeeCCCCEEEEEeCC--Cc
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VF-DHHNYVTCVQFNPIDDNYFISGSID--GK  332 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~--~~-~~~~~v~~~~~~p~~~~~l~s~s~d--g~  332 (626)
                      ...+.+.+|...|++++|+|++ +|++|+.||+|++||+.++....  .+ .|..+|.+++|+| ++++|++++.+  ..
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~  127 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERF  127 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCS
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccc-ccccccccccccccc
Confidence            4567788999999999999998 89999999999999998876543  33 4889999999999 99999998864  56


Q ss_pred             EEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCE-EEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          333 VRIWGVCEKRVV-DWADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       333 v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      +++|++.+++.. .+..|...|++++|+|++++ |++|+.||.|++||+++.+....       ...|...|+++.|+|+
T Consensus       128 ~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~-------~~~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST-------FGEHTKFVHSVRYNPD  200 (311)
T ss_dssp             EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE-------ECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccccceeeecccccccccccccccccccccc-------cccccccccccccCcc
Confidence            999999887654 45678899999999999985 77899999999999987654322       2234578999999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCccee--eeee-----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIH--KFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~--~~~~-----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      + .++++++.|+.|++||......  .+..     ..|...|.+++|+|++++|++|+.||.|+|||+.++
T Consensus       201 ~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         201 G-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             S-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             c-cccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            7 7999999999999999775432  2221     346789999999999999999999999999999876

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-32  Score=271.77  Aligned_cols=286  Identities=15%  Similarity=0.218  Sum_probs=232.5

Q ss_pred             CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      ......|.||.+.|++|+|+|++ +|+||+.||+|+|||+.+++++..+. |...|.+++|+| ++.+++++..++.+.+
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKL   85 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCE
T ss_pred             CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec-cccccccccccccccc
Confidence            44567899999999999999987 89999999999999999999998885 899999999999 9999999999999999


Q ss_pred             EeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          336 WGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       336 wd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      |+....... ....+...+.++.++|+++.+++++.|+.+++||+.+...... +.      .+...+.+++|+|++ .+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~-~~  157 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FT------GHREWVRMVRPNQDG-TL  157 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-EE------CCSSCEEEEEECTTS-SE
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeE-Ec------cCCCcceeeecccCC-CE
Confidence            998876654 4667888999999999999999999999999999988765332 22      234789999999997 79


Q ss_pred             EEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC--------------------CEEEEEeCCccEEEEECCCC
Q 006909          415 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG--------------------KHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g--------------------~~l~s~s~dg~I~iwd~~~~  474 (626)
                      |++++.|+.|++|+............+...+..+.|+|++                    .++++++.|+.|++|++.++
T Consensus       158 l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  237 (317)
T d1vyhc1         158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  237 (317)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC
Confidence            9999999999999988666555555678888888887754                    46889999999999998764


Q ss_pred             CCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccc
Q 006909          475 CFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS  554 (626)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s  554 (626)
                      .                     .+..                                +..+...+.+++|+|+|+++++
T Consensus       238 ~---------------------~~~~--------------------------------~~~~~~~v~~~~~~~~~~~l~s  264 (317)
T d1vyhc1         238 M---------------------CLMT--------------------------------LVGHDNWVRGVLFHSGGKFILS  264 (317)
T ss_dssp             E---------------------EEEE--------------------------------EECCSSCEEEEEECSSSSCEEE
T ss_pred             c---------------------EEEE--------------------------------EeCCCCCEEEEEECCCCCEEEE
Confidence            1                     0000                                1123334667788899998998


Q ss_pred             cCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccc--ccccccceEEEEecCCceEeeee
Q 006909          555 ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGLVIVTAGCDGMIKTFH  618 (626)
Q Consensus       555 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg~~ivt~g~Dg~Irvw~  618 (626)
                      ++. |+.|++||+.++           ++......|...+.  ++++ +|.+|||||.||+|++|+
T Consensus       265 ~~~-dg~i~iwd~~~~-----------~~~~~~~~h~~~V~~~~~s~-~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         265 CAD-DKTLRVWDYKNK-----------RCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EET-TTEEEEECCTTS-----------CCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred             EEC-CCeEEEEECCCC-----------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEeC
Confidence            887 799999999887           22333344554444  4455 899999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-32  Score=271.54  Aligned_cols=286  Identities=15%  Similarity=0.159  Sum_probs=213.9

Q ss_pred             CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      ...+.+.||...|++++|+|++ +|++|+.||+|++||+.+++++..+.  |...|++++|+| ++. +++++.|+.+++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~~   80 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKV   80 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEEE
Confidence            3467889999999999999998 89999999999999999999988873  888999999999 776 556677999999


Q ss_pred             EeCCCCeEE----EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          336 WGVCEKRVV----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       336 wd~~~~~~~----~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      |+.......    ....+...+.+++++|+++.+++++ ++.+++|+....    .... .      ...+++++|+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~----~~~~-~------~~~~~~~~~s~~~  148 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL----TEVP-I------SYNSSCVALSNDK  148 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE----EEEE-C------SSCEEEEEECTTS
T ss_pred             eccCCccccccccccccccccccccccccccccccccc-cccccccccccc----cccc-c------ccccccccccccc
Confidence            998654322    2345677889999999998776654 678999985421    1111 1      2568899999997


Q ss_pred             CcEEEEEeCCCcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909          412 SQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  490 (626)
Q Consensus       412 ~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  490 (626)
                       .++++++.|+.|++||+.+.. .......|...|.+++|+|++++|++++.|+.|++||+.++......          
T Consensus       149 -~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~----------  217 (299)
T d1nr0a2         149 -QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT----------  217 (299)
T ss_dssp             -CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC----------
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence             799999999999999976432 23334457889999999999999999999999999998764110000          


Q ss_pred             eccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                                                              .....|...+++++|+|+|+++++++. |+.|++||+.++
T Consensus       218 ----------------------------------------~~~~~h~~~v~~l~~s~~~~~l~sgs~-dg~i~iwd~~~~  256 (299)
T d1nr0a2         218 ----------------------------------------NSWTFHTAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKP  256 (299)
T ss_dssp             ----------------------------------------CCCCCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCT
T ss_pred             ----------------------------------------ccccccccccccccccccccceEEEcC-CCEEEEEECCCC
Confidence                                                    001223445777889999999999888 799999999876


Q ss_pred             CCCCCCChhhHHHHhhhccCC-ccccccccccceEEEEecCCceEeeeee
Q 006909          571 SDGYCQDPQQQRLQQQCLNNV-DDVRAISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                      ...         .......+. .....+...++.+|+|||.||+||+|++
T Consensus       257 ~~~---------~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         257 SDH---------PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             TSC---------CEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             Ccc---------eEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence            200         001111111 1122222236889999999999999995

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-31  Score=269.25  Aligned_cols=229  Identities=17%  Similarity=0.221  Sum_probs=181.0

Q ss_pred             ccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909          268 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  343 (626)
Q Consensus       268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~  343 (626)
                      ..+|+|++|+|++ +|++|+.|+.|+|||+.+++  ++..+ +|..+|++++|+| ++++|++|+.|++|++||+.++..
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeeccccc
Confidence            4789999999998 88899999999999998775  44555 4999999999999 999999999999999999987653


Q ss_pred             E---EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909          344 V---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  420 (626)
Q Consensus       344 ~---~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~  420 (626)
                      .   ....+...|++++|+|+++.|++|+.|+.+++|++...........   ....+...|++++|+|++ .+|++++.
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~p~~-~~l~s~s~  161 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH---IKKPIRSTVLSLDWHPNS-VLLAAGSC  161 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE---ECTTCCSCEEEEEECTTS-SEEEEEET
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccc---cccccccccccccccccc-cceecccc
Confidence            3   3557788999999999999999999999999999877654332111   133456789999999997 79999999


Q ss_pred             CCcEEEEeCCc------------------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC-c
Q 006909          421 DSKLRILDGVD------------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-Q  481 (626)
Q Consensus       421 dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~-~  481 (626)
                      |++|++|+...                  .........|...|.+++|+|+|++|++++.|+.|++||+.++...... .
T Consensus       162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  241 (371)
T d1k8kc_         162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  241 (371)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec
Confidence            99999999542                  1233444567889999999999999999999999999999876321111 1


Q ss_pred             cCCccceeeeccCCcEEEEe
Q 006909          482 KNSVRSCEHFFSEGVSVAVQ  501 (626)
Q Consensus       482 ~~~~~~~~~~~~~g~~~av~  501 (626)
                      ....+.++.|+|++.+++.+
T Consensus       242 ~~~~v~s~~fs~d~~~la~g  261 (371)
T d1k8kc_         242 ETLPLLAVTFITESSLVAAG  261 (371)
T ss_dssp             SSCCEEEEEEEETTEEEEEE
T ss_pred             ccccceeeeecCCCCEEEEE
Confidence            12233445666666655543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-30  Score=261.90  Aligned_cols=287  Identities=14%  Similarity=0.217  Sum_probs=223.5

Q ss_pred             CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      ....++|.||.+.|++++|+|++ +|+||+.||+|+|||+.+++.+..+. |..+|.+++|+| ++.++++|+.|+.+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeec
Confidence            35567899999999999999988 89999999999999999999998885 889999999999 9999999999999999


Q ss_pred             EeCCCCe-----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          336 WGVCEKR-----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       336 wd~~~~~-----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      |+.....     ......+........ ...+..++....+.....+.............       +...+....+.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  195 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCR-FLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-------HTGDVMSLSLAPD  195 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEE-EEETTEEEEEETTTEEEEEETTTTEEEEEEEC-------CSSCEEEEEECTT
T ss_pred             ccccccccccccceecccccccccccc-cccccccccccccccccccccccccccccccc-------cceeEeeeccccc
Confidence            9976533     223444555444444 44556788888999999998876554332211       2367888999988


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  490 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  490 (626)
                      + .++++++.|+.|++||+.+.........|...|.+++|+|++++|++|+.|+.|++|++.....              
T Consensus       196 ~-~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~--------------  260 (340)
T d1tbga_         196 T-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE--------------  260 (340)
T ss_dssp             S-SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------------
T ss_pred             c-ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc--------------
Confidence            6 7999999999999999987666666666889999999999999999999999999999876310              


Q ss_pred             eccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                             +.. +.                             ...+...+..++|+|+|+++++++. ++.|++||+.++
T Consensus       261 -------~~~-~~-----------------------------~~~~~~~i~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~  302 (340)
T d1tbga_         261 -------LMT-YS-----------------------------HDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKA  302 (340)
T ss_dssp             -------EEE-EC-----------------------------CTTCCSCEEEEEECSSSCEEEEEET-TSCEEEEETTTC
T ss_pred             -------ccc-cc-----------------------------cccccCceEEEEECCCCCEEEEEEC-CCEEEEEECCCC
Confidence                   000 00                             0111223567788999999999888 799999999887


Q ss_pred             CCCCCCChhhHHHHhhhccCCcccc--ccccccceEEEEecCCceEeeee
Q 006909          571 SDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGLVIVTAGCDGMIKTFH  618 (626)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg~~ivt~g~Dg~Irvw~  618 (626)
                                 .+......|.+.+.  ++++ +|.+|||||.||+|++|+
T Consensus       303 -----------~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         303 -----------DRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -----------CEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             -----------cEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence                       22233334444443  4555 899999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-30  Score=258.96  Aligned_cols=292  Identities=14%  Similarity=0.093  Sum_probs=214.6

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  251 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (626)
                      ++.+.+++|++.|++|+|+|++++||+|+.||+|+|||+.+....                                   
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~-----------------------------------   46 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-----------------------------------   46 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-----------------------------------
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-----------------------------------
Confidence            456778899999999999999999999999999999999763211                                   


Q ss_pred             ccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEE
Q 006909          252 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISG  327 (626)
Q Consensus       252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~  327 (626)
                             ..+....+|..+|.+++|+|++  +|++|+.|++|++|++..+.......  +........+.+ +...++++
T Consensus        47 -------~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  118 (342)
T d1yfqa_          47 -------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAA  118 (342)
T ss_dssp             -------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEE
T ss_pred             -------eEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccccccccc-cccccccc
Confidence                   1123344799999999999864  79999999999999998887766664  333445555666 88999999


Q ss_pred             eCCCcEEEEeCCCCeEE----E-e--ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909          328 SIDGKVRIWGVCEKRVV----D-W--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  400 (626)
Q Consensus       328 s~dg~v~iwd~~~~~~~----~-~--~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  400 (626)
                      +.++++++||++.....    . .  .........+.+.+.+..+++++.|+.|++|++..............    ...
T Consensus       119 ~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~----~~~  194 (342)
T d1yfqa_         119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG----LKY  194 (342)
T ss_dssp             ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS----CSS
T ss_pred             ccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecc----ccc
Confidence            99999999998653211    1 1  12233455677888999999999999999999987765433222211    124


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce--------eee-------eecCCCCCeEEEEEcCCCCEEEEEeCCcc
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVI--------HKF-------KGLPKSGSQMSASFTTTGKHIISIGDDCR  465 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~--------~~~-------~~~~~~~~v~~~~~sp~g~~l~s~s~dg~  465 (626)
                      .+.+..+.+.....+++++.||.+.+|+.....        ..+       ....|...+++++|+|++++|++|+.||.
T Consensus       195 ~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~  274 (342)
T d1yfqa_         195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE
Confidence            566777766655789999999999999854211        111       11235567899999999999999999999


Q ss_pred             EEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccc
Q 006909          466 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK  510 (626)
Q Consensus       466 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~  510 (626)
                      |++||+.++.............+.+|+|+|..++++.+.+...++
T Consensus       275 v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         275 ISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             EEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             EEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence            999999987432222222334566778888888888776654433

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-29  Score=254.42  Aligned_cols=329  Identities=16%  Similarity=0.217  Sum_probs=232.1

Q ss_pred             ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909          170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  249 (626)
Q Consensus       170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (626)
                      .+.+.++|+||++.|.+ +++++|++||||+.||+|+|||+.+                                     
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~-------------------------------------   46 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT-------------------------------------   46 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT-------------------------------------
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC-------------------------------------
Confidence            44566789999999875 4677899999999999999999987                                     


Q ss_pred             CCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909          250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                              .++++++.+|...|.+++|+|+ +|++++.|+++++|+........... +...+.....   ....++.+.
T Consensus        47 --------~~~~~~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  114 (342)
T d2ovrb2          47 --------GKCLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL---HEKRVVSGS  114 (342)
T ss_dssp             --------CCEEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEE
T ss_pred             --------CCEEEEEeCCCCCEEEEEeCCC-ccccceecccccccccccccceecccccceeEeeeec---ccccccccc
Confidence                    4557788899999999999874 89999999999999998887766664 4445555444   457888999


Q ss_pred             CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909          329 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  408 (626)
Q Consensus       329 ~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  408 (626)
                      .|+.+.+|+..+++............ ....+....+++++.++.+++||.........   +.    .+...+..+  +
T Consensus       115 ~d~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~---~~----~~~~~~~~~--~  184 (342)
T d2ovrb2         115 RDATLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDPETETCLHT---LQ----GHTNRVYSL--Q  184 (342)
T ss_dssp             TTSEEEEEESSSCCEEEEEECCSSCE-EEEEECSSCEEEEETTSCEEEEEGGGTEEEEE---EC----CCSSCEEEE--E
T ss_pred             cceeEEEeecccccceeeeecccccc-eeeccccceeeeecCCCeEEEeecccceeeEE---Ec----Ccccccccc--c
Confidence            99999999999887766544443333 34456777899999999999999987654322   11    122444444  4


Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC--CCCccCCcc
Q 006909          409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP--SSKQKNSVR  486 (626)
Q Consensus       409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~~~~~~  486 (626)
                      +++ .++++++.||.|++||............|...+.+++++  +++|++++.|+.|++||+......  ...+.....
T Consensus       185 ~~~-~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  261 (342)
T d2ovrb2         185 FDG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS  261 (342)
T ss_dssp             ECS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS
T ss_pred             CCC-CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeee
Confidence            454 689999999999999988665555556678888887765  579999999999999999876322  111122222


Q ss_pred             ceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCC----CC
Q 006909          487 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAE----KL  562 (626)
Q Consensus       487 ~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~----~i  562 (626)
                      .+..+.+++..++++.......+|.+.++...+.+.       .....++...|.+++|+|++.++++++. +|    +|
T Consensus       262 ~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~-------~~~~~~~~~~v~~v~~s~~~~~la~g~~-dGt~~~~l  333 (342)
T d2ovrb2         262 AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV-------TLESGGSGGVVWRIRASNTKLVCAVGSR-NGTEETKL  333 (342)
T ss_dssp             CEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-------ECTTGGGTCEEEEEEECSSEEEEEEECS-SSSSCCEE
T ss_pred             ceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEe-------cccCCCCCCCEEEEEECCCCCEEEEEeC-CCCCeeEE
Confidence            233333344454444333334444443322111000       0112345567999999999999998876 55    48


Q ss_pred             CCCCccc
Q 006909          563 PLWDVTI  569 (626)
Q Consensus       563 ~vwd~~~  569 (626)
                      .+||+..
T Consensus       334 ~~~Df~~  340 (342)
T d2ovrb2         334 LVLDFDV  340 (342)
T ss_dssp             EEEECCC
T ss_pred             EEEeCCC
Confidence            8898764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6e-29  Score=256.11  Aligned_cols=256  Identities=13%  Similarity=0.193  Sum_probs=181.5

Q ss_pred             cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909          175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  254 (626)
Q Consensus       175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (626)
                      ...++|.+.|+++++++  ++|+|||.|++|+|||........                                     
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~-------------------------------------   48 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN-------------------------------------   48 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC-------------------------------------
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc-------------------------------------
Confidence            45679999999999875  699999999999999976532110                                     


Q ss_pred             cccCCCceeeccCccceEEEE------EcCC-C-eEEEEeCCCcEEEeccCCCeeeEe-----e------cCCCCeEEEE
Q 006909          255 QIEESPLQELHGHKGDVLDLA------WSNS-N-YLLSCSMDKTVRMWQVGCNQCLNV-----F------DHHNYVTCVQ  315 (626)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~------~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~-----~------~~~~~v~~~~  315 (626)
                        ..........|...+..+.      ..+. + .+++++.||.|++|++........     .      .+...+..++
T Consensus        49 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (393)
T d1sq9a_          49 --PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK  126 (393)
T ss_dssp             --GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEE
T ss_pred             --ccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEE
Confidence              0001112223333332222      2222 2 677999999999999754322111     1      1445677888


Q ss_pred             EeeC----CCCEEEEEeCCCcEEEEeCCCCe-------------------EEEeccCCCCeEEEEEeeCCCEEEEEecCC
Q 006909          316 FNPI----DDNYFISGSIDGKVRIWGVCEKR-------------------VVDWADVRDVISAICYIPDGKGFIVGSITG  372 (626)
Q Consensus       316 ~~p~----~~~~l~s~s~dg~v~iwd~~~~~-------------------~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg  372 (626)
                      |.+.    .+.++++++.||++++|++....                   ......+...+.+++|+|++ +|++|+.||
T Consensus       127 ~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg  205 (393)
T d1sq9a_         127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG  205 (393)
T ss_dssp             EECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred             EecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCC
Confidence            8762    24678999999999999974311                   11123345568899999998 899999999


Q ss_pred             cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc---EEEEeCCccee--eee----------
Q 006909          373 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK---LRILDGVDVIH--KFK----------  437 (626)
Q Consensus       373 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~---i~iwd~~~~~~--~~~----------  437 (626)
                      +|++||+.+.+... ..........|..+|++++|+|+| .+|++++.|++   |++||+.....  .+.          
T Consensus       206 ~i~iwd~~~~~~~~-~~~~~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~  283 (393)
T d1sq9a_         206 TVQISELSTLRPLY-NFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL  283 (393)
T ss_dssp             EEEEEETTTTEEEE-EEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred             cEEEEeeccccccc-ccccccccccccceEEEccccccc-ceeeeecCCCCcceeeecccccceeeeeecccccccccee
Confidence            99999999876533 333333345677899999999998 79999998874   89999774322  221          


Q ss_pred             -ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          438 -GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       438 -~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                       ..+|...|++++|+|++++|++++.|++|+|||+.++
T Consensus       284 ~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         284 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             eeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence             1258889999999999999999999999999999875

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-28  Score=246.67  Aligned_cols=256  Identities=18%  Similarity=0.252  Sum_probs=190.7

Q ss_pred             ccccccc-cCcEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          174 SQEIQAH-KGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       174 ~~~l~~H-~~~V~~l~fsp--dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      ...+.+| ...|++++|+|  +|++||+|+.||+|+|||+..+.....                                
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~--------------------------------  102 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS--------------------------------  102 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE--------------------------------
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee--------------------------------
Confidence            4456677 56899999998  578999999999999999876332110                                


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEe--CCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEE
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS  326 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s--~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s  326 (626)
                           ........+..|.++|.+++|++++ +|++++  .++.+++|+..+++++..+. |...|++++|+|....++++
T Consensus       103 -----~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1         103 -----VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             -----EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             -----eecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence                 0011123456789999999999998 666554  47789999999999988885 89999999999944456888


Q ss_pred             EeCCCcEEEEeCCCCeEEE----eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909          327 GSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  401 (626)
Q Consensus       327 ~s~dg~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  401 (626)
                      ++.|+.|++||....+...    ...+...|.+++|+|+ +.++++++.||.|++||+++++....   +..+...+...
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~---l~~~~~~v~~~  254 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY---IEDDQEPVQGG  254 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE---CCBTTBCCCSC
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccc---ccccccccccc
Confidence            9999999999998766543    3356778999999996 68899999999999999988765322   22222222334


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCC-CCEEEEEeCCccEEEEEC
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~  471 (626)
                      +.++.| |+| .+|++++.|+.|+|||+.+  .+..+..+.+...+..+++.+. +.+|++++.||.|+|||+
T Consensus       255 ~~s~~~-~dg-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         255 IFALSW-LDS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEE-SSS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eeeeec-cCC-CEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            455555 455 6999999999999999874  4455555545444444444433 358999999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-27  Score=229.19  Aligned_cols=282  Identities=18%  Similarity=0.265  Sum_probs=209.6

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .+...+|...|+|++|  ||++||||+.||+|+|||+.+                                         
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~-----------------------------------------   44 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT-----------------------------------------   44 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS-----------------------------------------
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCC-----------------------------------------
Confidence            3445678899999765  799999999999999999987                                         


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  333 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v  333 (626)
                          .+++.++.+|...|++++|++ .+|++|+.|++|++|++..+.............. .+.+ ....++++..++.+
T Consensus        45 ----~~~~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~  117 (293)
T d1p22a2          45 ----LECKRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRF-NNGMMVTCSKDRSI  117 (293)
T ss_dssp             ----CCEEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEEC-CTTEEEEEETTSCE
T ss_pred             ----CcEEEEEecCCCCEeeeeccc-ceeecccccccccccccccccccccccccccccc-cccc-cccceeecccccce
Confidence                455788899999999999853 4899999999999999999888777754443333 3334 67789999999999


Q ss_pred             EEEeCCCCe----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          334 RIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       334 ~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      .+|+.....    ......+...+..+.+.  ...+++++.|+.+++||+.+.+.... +.      .+...+..+.+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~-~~------~~~~~v~~~~~~~  188 (293)
T d1p22a2         118 AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRT-LN------GHKRGIACLQYRD  188 (293)
T ss_dssp             EEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEE-EE------CCSSCEEEEEEET
T ss_pred             eEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEE-Ec------ccccccccccCCC
Confidence            999987654    23345667777766654  55788999999999999988765332 22      2235677777764


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909          410 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  489 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  489 (626)
                         ..+++++.|+.|++||..+.........+...+..  +++++.+|++++.||.|++||+.....+.....       
T Consensus       189 ---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-------  256 (293)
T d1p22a2         189 ---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG-------  256 (293)
T ss_dssp             ---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT-------
T ss_pred             ---CeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCC-------
Confidence               48999999999999998876655555556666654  567889999999999999999876422111100       


Q ss_pred             eeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909          490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       490 ~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                           ...+.                                .+..|...|++++|  |++++++++. |++|++||
T Consensus       257 -----~~~~~--------------------------------~~~~H~~~V~~v~~--d~~~l~s~s~-Dg~i~iWD  293 (293)
T d1p22a2         257 -----TLCLR--------------------------------TLVEHSGRVFRLQF--DEFQIVSSSH-DDTILIWD  293 (293)
T ss_dssp             -----TTEEE--------------------------------EECCCSSCCCCEEE--CSSCEEECCS-SSEEEEEC
T ss_pred             -----ceeeE--------------------------------EecCCCCCEEEEEE--cCCEEEEEec-CCEEEEeC
Confidence                 00000                                02334455666666  5678999888 89999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.9e-27  Score=233.23  Aligned_cols=264  Identities=17%  Similarity=0.224  Sum_probs=193.7

Q ss_pred             ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcc------eeeeecCCCCCccCCCCCeeeecCCCCCCc
Q 006909          172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA------SCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  245 (626)
Q Consensus       172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (626)
                      .+.++|+||.++|++++|+|    |+||+.||+|++||+.++..      .+..+.+...+.....++.++++       
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w-------   72 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVN-------   72 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEET-------
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeeccccccc-------
Confidence            35678999999999999998    99999999999999876422      12222222222222222222221       


Q ss_pred             eeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE
Q 006909          246 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI  325 (626)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  325 (626)
                               .+.      ...+...+.++++++++.++..+.++.+.+|+..++..+..+.+...+.+  ++| +++.++
T Consensus        73 ---------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~  134 (287)
T d1pgua2          73 ---------GIT------KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA--VSL-SQNYVA  134 (287)
T ss_dssp             ---------TEE------EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE--EEE-CSSEEE
T ss_pred             ---------ccc------ccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeee--eec-cCccee
Confidence                     111      01233457778888888666667777888888888888888876666554  556 677887


Q ss_pred             EEeCCC-cEEEEeCCCCeEEE--eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909          326 SGSIDG-KVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       326 s~s~dg-~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      +++.++ .|++|++.......  ...+...+++++|+|++++|++|+.||.|++||+.+.......      ...|..+|
T Consensus       135 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~------~~~h~~~v  208 (287)
T d1pgua2         135 VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR------WAFRTSKI  208 (287)
T ss_dssp             EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC------SCCCSSCE
T ss_pred             eeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc------cccccccc
Confidence            777765 79999997655443  3346788999999999999999999999999999887654322      23445889


Q ss_pred             EEEEEcCCC---------CcEEEEEeCCCcEEEEeCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          403 TGIQFSRDE---------SQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       403 ~~l~~s~~~---------~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                      .+++|+|.+         ..++++|+.|++|++||+.+....+. ...|...|++++|+|++ .|++++.|+.|++|++
T Consensus       209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            999998853         35899999999999999875333333 34588999999999986 5889999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.4e-27  Score=235.44  Aligned_cols=244  Identities=15%  Similarity=0.179  Sum_probs=186.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909          183 CIWTLKFSPDGRYLASGGEDG-VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  261 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (626)
                      .+++++|+|+|+.||.++.+. .|+.|+....                                           ....+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~-------------------------------------------~~~~~   55 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS-------------------------------------------KVPPV   55 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCC-------------------------------------------SSCSE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCC-------------------------------------------Cccce
Confidence            467899999999999887554 2445544321                                           12345


Q ss_pred             eeeccCc-cceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCeeeEe--------e-cCCCCeEEEEEeeCCCCEEEEEe
Q 006909          262 QELHGHK-GDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLNV--------F-DHHNYVTCVQFNPIDDNYFISGS  328 (626)
Q Consensus       262 ~~~~~h~-~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~~~~~--------~-~~~~~v~~~~~~p~~~~~l~s~s  328 (626)
                      ..+.+|. ..|++++|+|+  + +|++|+.||+|+|||+..++....        + .|..+|.+++|+| ++.++++++
T Consensus        56 ~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~  134 (325)
T d1pgua1          56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVG  134 (325)
T ss_dssp             EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceee
Confidence            6677874 68999999983  4 888999999999999975543221        1 3778999999999 999988776


Q ss_pred             C--CCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCE-EEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909          329 I--DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  404 (626)
Q Consensus       329 ~--dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~  404 (626)
                      .  ++.+++|+..+++.+ .+..|...|.+++|+|++.+ +++++.|+.+++||....+.......    ...+...|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~----~~~~~~~v~~  210 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----HHKQGSFVRD  210 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----SSCTTCCEEE
T ss_pred             ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc----ccCCCCccEE
Confidence            4  678999999887765 45678999999999999875 67799999999999876654332221    2345678999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEc---CCCCEEEEEeCCccEEEEECCCC
Q 006909          405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT---TTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s---p~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++|+|++..++++++.|+.|++||+.+.........|...+..+.|+   |+|++|++++.|+.|+|||+.++
T Consensus       211 v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         211 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             eeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence            99999866899999999999999987654443333355555544444   78999999999999999999976

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.3e-28  Score=235.46  Aligned_cols=282  Identities=14%  Similarity=0.180  Sum_probs=199.7

Q ss_pred             CCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      .++++++.||..+|++++|+|   |+||+.||+|++||+.++.    ..|...|.++++++  +..+++++.|++|++|+
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~--~~~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMH----QDHSNLIVSLDNSK--AQEYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT---TEEEETTSCEEETTTTEEE----CCCCSCEEEEECCS--TTCCEEEETTTEEEETT
T ss_pred             cceeEEECCCCCceEEEEECc---EEEEeCCCeEEEEECCCCC----CCCCCCEEEEEecC--CCeEEEEeecccccccc
Confidence            457889999999999999988   9999999999999997643    35889999999986  45689999999999999


Q ss_pred             CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       338 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      +...      .....+..+++++++..++++ .++.+.+|+..+..... .....       ..+  .++++++ ..+++
T Consensus        74 ~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-------~~~--~~~~~~~-~~~~v  135 (287)
T d1pgua2          74 ITKH------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIK-SVRLN-------SPG--SAVSLSQ-NYVAV  135 (287)
T ss_dssp             EEEE------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEE-EEECS-------SCE--EEEEECS-SEEEE
T ss_pred             cccc------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeee-ecccc-------cee--eeeeccC-cceee
Confidence            7543      234557788888888666654 56678889887766432 22211       233  4556665 46666


Q ss_pred             EeCC-CcEEEEeCCcceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCC
Q 006909          418 TSED-SKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG  495 (626)
Q Consensus       418 ~s~d-g~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g  495 (626)
                      ++.+ +.+++|+.......... ..+...+.+++|+|++++|++|+.||.|++||+.++......         ...+.+
T Consensus       136 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---------~~~h~~  206 (287)
T d1pgua2         136 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR---------WAFRTS  206 (287)
T ss_dssp             EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC---------SCCCSS
T ss_pred             eccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc---------cccccc
Confidence            6665 57999998755444433 346778999999999999999999999999999876321110         011234


Q ss_pred             cEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCC
Q 006909          496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYC  575 (626)
Q Consensus       496 ~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~  575 (626)
                      .+..++|+|.+....                                 .+.+++.++++++. |++|++||+..+.    
T Consensus       207 ~v~~~~~~p~~~~~~---------------------------------~~~~~~~~l~sgs~-D~~i~iw~~~~~~----  248 (287)
T d1pgua2         207 KINAISWKPAEKGAN---------------------------------EEEIEEDLVATGSL-DTNIFIYSVKRPM----  248 (287)
T ss_dssp             CEEEEEECCCC---------------------------------------CCSCCEEEEEET-TSCEEEEESSCTT----
T ss_pred             ccceeeecccccccc---------------------------------cccCCCCeeEeecC-CCeEEEEECCCCC----
Confidence            566777877754322                                 23456778888888 8999999987752    


Q ss_pred             CChhhHHHHhhhccCCccccccccccceEEEEecCCceEeeeee
Q 006909          576 QDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHN  619 (626)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~  619 (626)
                            ........|...+.++....+..|+|+|.||+||+|++
T Consensus       249 ------~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         249 ------KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             ------CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             ------eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence                  11222334444444443222346999999999999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2e-27  Score=237.24  Aligned_cols=311  Identities=13%  Similarity=0.041  Sum_probs=216.7

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee----eEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      ++..++|...|++|+|+|++ +|++|+.||+|+|||+.++..    ...+.|..+|.+++|+|.++.+|++|+.||+|++
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            55677999999999999987 999999999999999975533    3444699999999999955678999999999999


Q ss_pred             EeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909          336 WGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  413 (626)
Q Consensus       336 wd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  413 (626)
                      |++.........  .+........+.+++..+++++.++.+++||++............ ...........+.+.+.+ .
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~  161 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTKVKNKIFTMDTNS-S  161 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSSSCCCEEEEEECS-S
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccc-ccccccceeeeeeeeccC-C
Confidence            999876544422  333445566677888999999999999999987554433222111 111122344556666665 6


Q ss_pred             EEEEEeCCCcEEEEeCCcce---eeeeecCCCCCeEEEEE-cCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909          414 RIMITSEDSKLRILDGVDVI---HKFKGLPKSGSQMSASF-TTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  489 (626)
Q Consensus       414 ~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~-sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  489 (626)
                      .+++++.|+.|++||+....   ...........+....+ ..++..+++++.||.+.+|++............      
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~------  235 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR------  235 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC------
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc------
Confidence            89999999999999976322   12222233444555554 456789999999999999999865222111100      


Q ss_pred             eeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909          490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  569 (626)
Q Consensus       490 ~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~  569 (626)
                             .....+                         ........+...+.+++|+|+++++++++. |+.|++||+.+
T Consensus       236 -------~~~~~~-------------------------~~~~~~~~~~~~v~~l~~sp~~~~lasg~~-Dg~v~vWD~~~  282 (342)
T d1yfqa_         236 -------FAFRCH-------------------------RLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQT  282 (342)
T ss_dssp             -------EEEECC-------------------------CCCTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEEETTT
T ss_pred             -------ceeeee-------------------------eeccCCCcccccceeEEecCCccEEEEECC-CCEEEEEECCC
Confidence                   000000                         000012234445778999999999999998 89999999988


Q ss_pred             CCCCCCCChhhHHHHhhh-ccCCccccccccccceEEEEecCCceEeeeeecCccc
Q 006909          570 DSDGYCQDPQQQRLQQQC-LNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPI  624 (626)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~~g~p~  624 (626)
                      +.           ....+ ..+.....++++ +|..+++|+.|+++++|..++.++
T Consensus       283 ~~-----------~l~~~~~~~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~~~~~  326 (342)
T d1yfqa_         283 RK-----------KIKNFAKFNEDSVVKIAC-SDNILCLATSDDTFKTNAAIDQTI  326 (342)
T ss_dssp             TE-----------EEEECCCCSSSEEEEEEE-CSSEEEEEEECTHHHHCSSSCTTS
T ss_pred             Cc-----------EEEEecCCCCCEEEEEEe-CCCEEEEEEcCCcEEEeeeeCCCc
Confidence            72           22222 223444567777 799999999999999998877654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.4e-26  Score=227.69  Aligned_cols=315  Identities=16%  Similarity=0.172  Sum_probs=208.4

Q ss_pred             CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      .++.+.+.||.+.|.+ +++++| +|+||+.||+|+|||+.+++++..+. |...|.+++|+|   ++|++|+.|+.+++
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~   81 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKV   81 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEE
T ss_pred             CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC---Cccccceecccccc
Confidence            3567889999998854 244445 89999999999999999999999885 899999999986   59999999999999


Q ss_pred             EeCCCCeEEEecc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909          336 WGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  414 (626)
Q Consensus       336 wd~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~  414 (626)
                      |+........... ....+...  ......++.+..|+.+.+|+..+......... .       ..... ...+.. ..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~-------~~~~~-~~~~~~-~~  149 (342)
T d2ovrb2          82 WNAETGECIHTLYGHTSTVRCM--HLHEKRVVSGSRDATLRVWDIETGQCLHVLMG-H-------VAAVR-CVQYDG-RR  149 (342)
T ss_dssp             EETTTTEEEEEECCCSSCEEEE--EEETTEEEEEETTSEEEEEESSSCCEEEEEEC-C-------SSCEE-EEEECS-SC
T ss_pred             cccccccceecccccceeEeee--ecccccccccccceeEEEeecccccceeeeec-c-------cccce-eecccc-ce
Confidence            9998876655333 33334333  34456788999999999999988765432211 1       12222 233333 58


Q ss_pred             EEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC-ccCCccceeeecc
Q 006909          415 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFS  493 (626)
Q Consensus       415 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~  493 (626)
                      +++++.|+.|++||............|...+..  +++++.+|++++.||.|++||+......... .......+  +.+
T Consensus       150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~--~~~  225 (342)
T d2ovrb2         150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG--MEL  225 (342)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE--EEE
T ss_pred             eeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeE--Eec
Confidence            899999999999998866655555556555554  4557899999999999999999876321111 11111222  222


Q ss_pred             CCcEEEEecCCCCcccccccCCCccccCccccccCCCC--cccCCCc-ccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          494 EGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSER-FSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       494 ~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~-~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      ++..++++.....              +.+|+......  .+..+.. .....++++++.++++++. |+.|++||+.++
T Consensus       226 ~~~~l~s~s~d~~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-Dg~i~iwd~~tg  290 (342)
T d2ovrb2         226 KDNILVSGNADST--------------VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD-DGTVKLWDLKTG  290 (342)
T ss_dssp             ETTEEEEEETTSC--------------EEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET-TSEEEEEETTTC
T ss_pred             CCCEEEEEcCCCE--------------EEEEecccccccccccccceeeeceeecccCCCeeEEEcC-CCEEEEEECCCC
Confidence            2334444433333              33343322111  1111111 1222345566778899888 899999999987


Q ss_pred             CCCCCCChhhHHHHhhh-----ccCCccc--cccccccceEEEEecCCce----Eeeeee
Q 006909          571 SDGYCQDPQQQRLQQQC-----LNNVDDV--RAISATWGLVIVTAGCDGM----IKTFHN  619 (626)
Q Consensus       571 ~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~s~~dg~~ivt~g~Dg~----Irvw~~  619 (626)
                      .           ..+..     ..+.+.+  .++++ +|.+||+|+.||+    |++|+.
T Consensus       291 ~-----------~i~~~~~~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         291 E-----------FIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             C-----------EEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEEC
T ss_pred             C-----------EEEEEecccCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEeC
Confidence            2           11111     1222222  34455 7999999999996    899985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-25  Score=217.46  Aligned_cols=286  Identities=15%  Similarity=0.216  Sum_probs=204.2

Q ss_pred             CceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909          260 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  338 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~  338 (626)
                      .++.+..|...|+|++|. +.+|+||+.||+|+|||+.+++++.++. |...|++++|   ++++|++|+.|+.|++|++
T Consensus         7 ~i~~~~~~~~~V~c~~~d-~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQYD-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CEECCCSSCCCEEEEECC-SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEES
T ss_pred             EEeccCCCCCCEEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec---ccceeeccccccccccccc
Confidence            355566788999998763 3499999999999999999999999985 8999999987   5689999999999999999


Q ss_pred             CCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909          339 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  418 (626)
Q Consensus       339 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~  418 (626)
                      ..+............. ..+.+....++++..++.+.+|+..............    .+...+..+.+.+.   .++++
T Consensus        83 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~---~~~~~  154 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV----GHRAAVNVVDFDDK---YIVSA  154 (293)
T ss_dssp             SSCCEEEEECCCCSCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC----CCSSCEEEEEEETT---EEEEE
T ss_pred             cccccccccccccccc-ccccccccceeecccccceeEeecccccccccccccc----ccccccccceeccc---ccccc
Confidence            9887766544443333 3455667789999999999999998766544333222    23467888777664   68899


Q ss_pred             eCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEE
Q 006909          419 SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSV  498 (626)
Q Consensus       419 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~  498 (626)
                      +.|+.|++||..+.........+...+..+.++  +.++++++.|+.|++||+.+...                     +
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---------------------~  211 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC---------------------L  211 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE---------------------E
T ss_pred             cCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccccee---------------------e
Confidence            999999999988655544444466777777665  67899999999999999986411                     0


Q ss_pred             EEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCCh
Q 006909          499 AVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDP  578 (626)
Q Consensus       499 av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~  578 (626)
                      ... ..                               +...+  ..+++++.++++++. |+.|++||+.........  
T Consensus       212 ~~~-~~-------------------------------~~~~v--~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~--  254 (293)
T d1p22a2         212 RVL-EG-------------------------------HEELV--RCIRFDNKRIVSGAY-DGKIKVWDLVAALDPRAP--  254 (293)
T ss_dssp             EEE-CC-------------------------------CSSCE--EEEECCSSEEEEEET-TSCEEEEEHHHHTSTTSC--
T ss_pred             eee-cc-------------------------------cceee--eeccccceEEEEEcC-CCEEEEEECCCCcccccc--
Confidence            000 00                               00001  124556677888877 799999998765211100  


Q ss_pred             hhHHHHhhhccCCccccccccccceEEEEecCCceEeeee
Q 006909          579 QQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH  618 (626)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~  618 (626)
                      ...........|.+.+.+++. ++.+|||||.||+|++|+
T Consensus       255 ~~~~~~~~~~~H~~~V~~v~~-d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         255 AGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTTTEEEEECCCSSCCCCEEE-CSSCEEECCSSSEEEEEC
T ss_pred             CCceeeEEecCCCCCEEEEEE-cCCEEEEEecCCEEEEeC
Confidence            000111223345555556666 788999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.5e-25  Score=223.40  Aligned_cols=246  Identities=20%  Similarity=0.320  Sum_probs=184.8

Q ss_pred             cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909          171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  250 (626)
Q Consensus       171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (626)
                      ..+.++|++|++.|++++|+|+ .+|++|+.||+|++|++.......                                 
T Consensus        43 ~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~---------------------------------   88 (355)
T d1nexb2          43 KKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTH---------------------------------   88 (355)
T ss_dssp             TEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEE---------------------------------
T ss_pred             CcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccc---------------------------------
Confidence            3456778899999999999986 589999999999999998743211                                 


Q ss_pred             CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-----------------------
Q 006909          251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----------------------  306 (626)
Q Consensus       251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-----------------------  306 (626)
                                ......+...+....+.+++ .+++++.|+.|++||+.+........                       
T Consensus        89 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          89 ----------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             ----------EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             ----------ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence                      11112233445556667776 88999999999999998765443221                       


Q ss_pred             -CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909          307 -HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  384 (626)
Q Consensus       307 -~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~  384 (626)
                       |...+.  .+.+ ++++++++..|+.|++||+.+++... ...+...+.++.++|++..+++++.|+.|++||+.+...
T Consensus       159 ~~~~~v~--~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  235 (355)
T d1nexb2         159 GHMASVR--TVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL  235 (355)
T ss_dssp             CCSSCEE--EEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE
T ss_pred             ecccccc--cccc-ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccc
Confidence             222233  3444 78999999999999999999887654 556788899999999999999999999999999988765


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEE-EEEcCCCCEEEEEeCC
Q 006909          385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHIISIGDD  463 (626)
Q Consensus       385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~s~s~d  463 (626)
                      ...       ...|...|+++++++   .+|++++.||.|++||+.+....+..+  ...+.. ..+++++++|++|+ |
T Consensus       236 ~~~-------~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~-d  302 (355)
T d1nexb2         236 MYT-------LQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS-E  302 (355)
T ss_dssp             EEE-------ECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEEE--CTTCCCCCEEEECSSEEEEEE-T
T ss_pred             ccc-------ccccccccccccccc---ceeeeeecccccccccccccceecccc--cCCceEEEEEcCCCCEEEEEe-C
Confidence            332       223457899999975   489999999999999999887777764  334444 45677888777765 8


Q ss_pred             ccEEEEECCCCCC
Q 006909          464 CRVYVWNYDELCF  476 (626)
Q Consensus       464 g~I~iwd~~~~~~  476 (626)
                      +.|+|||++++..
T Consensus       303 ~~i~vwd~~tg~~  315 (355)
T d1nexb2         303 NQFNIYNLRSGKL  315 (355)
T ss_dssp             TEEEEEETTTCCB
T ss_pred             CEEEEEECCCCCE
Confidence            9999999998743

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=8e-27  Score=235.86  Aligned_cols=315  Identities=10%  Similarity=-0.048  Sum_probs=214.3

Q ss_pred             EEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCeEEEeccC
Q 006909          274 LAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWADV  349 (626)
Q Consensus       274 l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~  349 (626)
                      -.||| || +++++ .+|.|++||+.++..++ +.|...|.+++|+| +++.|++++.+.  .|++||+.+++...+..+
T Consensus         8 ~~fSP~dG~~~a~~-~~g~v~v~d~~~~~~~~-~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~   84 (360)
T d1k32a3           8 EDFSPLDGDLIAFV-SRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN   84 (360)
T ss_dssp             EEEEECGGGCEEEE-ETTEEEEECTTSSBEEE-CSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEECCCC
T ss_pred             ccccCCCCCEEEEE-ECCeEEEEECCCCcEEE-ccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEEeeCC
Confidence            56899 78 55555 46899999999887765 47899999999999 999988776553  799999999999999999


Q ss_pred             CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe----------
Q 006909          350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS----------  419 (626)
Q Consensus       350 ~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s----------  419 (626)
                      ...+.+++|+|+|++|++++.++.+++|++.+...... ...      +...+.+++|+|+| ++|+.+.          
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI-ERS------REAMITDFTISDNS-RFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EEC------SSSCCCCEEECTTS-CEEEEEEEECSSTTCSC
T ss_pred             CceEEeeeecccccccceeccccccccccccccceeee-eec------ccccccchhhccce-eeeeeeccccccceeec
Confidence            99999999999999999999999999999988765332 221      23678899999998 5676543          


Q ss_pred             CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEE
Q 006909          420 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVA  499 (626)
Q Consensus       420 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~a  499 (626)
                      .++.+++||........ ...+...+..++|+|+|++|++++.++.+.+|+...........  .......++++.. ..
T Consensus       157 ~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~-~~  232 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV--SKPFVIPLIPGSP-NP  232 (360)
T ss_dssp             CEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSC--BEEEEEESSTTCC-CG
T ss_pred             cccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccc--cceEEEecccCcc-cc
Confidence            34568999987654332 33366778899999999999999999999999976542211111  0111122222222 23


Q ss_pred             EecCCCCcccccccCCCccccCccccc--cCCC-CcccCCCc---ccCCccccCCCCcccccCCCCCCCCCCCcccCCCC
Q 006909          500 VQWPGIGTEQKSLCSSSLRDCSQKWDN--LETA-PWIRDSER---FSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDG  573 (626)
Q Consensus       500 v~~s~~~~~l~~~~~~~~~~~~~~w~~--~~~~-~~~~~~~~---~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~  573 (626)
                      +.|++++..+.....+........|..  .... ..+.....   .+....+++++.++++++. ++.|++||+.++.  
T Consensus       233 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~--  309 (360)
T d1k32a3         233 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE-KGVLLKYDVKTRK--  309 (360)
T ss_dssp             GGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCC-CEEEEEEETTTCC--
T ss_pred             ceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCC-CCEEEEEECCCCe--
Confidence            455666655443222211111111111  0000 01111122   2333344444456677766 6899999988762  


Q ss_pred             CCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeec
Q 006909          574 YCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                               .    ..+.++.  .++++ ||++|++++.||+|++|+..
T Consensus       310 ---------~----~~~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         310 ---------V----TEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             ---------E----EEEEEEEEEEEECT-TSCEEEEEETTSCEEEEESS
T ss_pred             ---------E----EEecCCcCEEEECC-CCCEEEEEECCCeEEEEECC
Confidence                     1    1222333  46667 99999999999999999963

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.9e-26  Score=231.69  Aligned_cols=316  Identities=10%  Similarity=0.007  Sum_probs=223.6

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceee
Q 006909          186 TLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  264 (626)
Q Consensus       186 ~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (626)
                      ...||| ||+++|+++ +|.|++||+.++.                                              +..+
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~----------------------------------------------~~~~   39 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTY----------------------------------------------VLKV   39 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSB----------------------------------------------EEEC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCc----------------------------------------------EEEc
Confidence            467999 999999987 5789999987632                                              2222


Q ss_pred             ccCccceEEEEEcCCC-eEEEEeCC--CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909          265 HGHKGDVLDLAWSNSN-YLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  341 (626)
Q Consensus       265 ~~h~~~V~~l~~s~~~-~l~s~s~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~  341 (626)
                       +|...|.+++|+|+| .|++++.+  ..|++||+.+++......|...|.+++|+| ++++|++++.++.+++|++.++
T Consensus        40 -~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          40 -PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             -SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTC
T ss_pred             -cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecc-cccccceecccccccccccccc
Confidence             689999999999999 66666544  379999999998888888999999999999 9999999999999999999988


Q ss_pred             eEEE-eccCCCCeEEEEEeeCCCEEEEEec----------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          342 RVVD-WADVRDVISAICYIPDGKGFIVGSI----------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       342 ~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      +... ...+...+.+++|+|+|++|+.+..          ++.+++|++.+......        ..+...+..++|+|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--------~~~~~~~~~~~~spd  189 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA--------TTENSHDYAPAFDAD  189 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC--------SCSSSBEEEEEECTT
T ss_pred             ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee--------cccccccccccccCC
Confidence            8765 4557778899999999999987543          34689999987654221        122367889999999


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceee-------eeecCCCCCeEEEEEcCCCCEEEEEeCCc---cEEEEECCCCCCCCCC
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHK-------FKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYDELCFPSSK  480 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~-------~~~~~~~~~v~~~~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~  480 (626)
                      | ++|++++.++.+.+||.......       .....+...+..+.|++++..++++..+.   ..++|.+...      
T Consensus       190 g-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~------  262 (360)
T d1k32a3         190 S-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD------  262 (360)
T ss_dssp             S-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC------
T ss_pred             C-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccC------
Confidence            8 78999999999999996532211       11112344445556777777666554332   1223332211      


Q ss_pred             ccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCC
Q 006909          481 QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAE  560 (626)
Q Consensus       481 ~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~  560 (626)
                        ......+..++ +....+.+...+.....+........+.+|+.....  ...+...+.+++|||||++|++++. |+
T Consensus       263 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~v~~~~~SpDG~~l~~~~~-Dg  336 (360)
T d1k32a3         263 --PGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK--VTEVKNNLTDLRLSADRKTVMVRKD-DG  336 (360)
T ss_dssp             --CBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC--EEEEEEEEEEEEECTTSCEEEEEET-TS
T ss_pred             --cCceeEeeecC-CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe--EEEecCCcCEEEECCCCCEEEEEEC-CC
Confidence              01112223333 334456666665544444444444556667753322  2233445889999999999999988 79


Q ss_pred             CCCCCCcccCC
Q 006909          561 KLPLWDVTIDS  571 (626)
Q Consensus       561 ~i~vwd~~~~~  571 (626)
                      .|++||+..++
T Consensus       337 ~i~v~d~~~~~  347 (360)
T d1k32a3         337 KIYTFPLEKPE  347 (360)
T ss_dssp             CEEEEESSCTT
T ss_pred             eEEEEECCCCC
Confidence            99999999883

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.7e-25  Score=225.51  Aligned_cols=265  Identities=15%  Similarity=0.187  Sum_probs=182.3

Q ss_pred             eeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCe-------eeEeecCCCCeEEEEE---ee---CCCCEEEEEe
Q 006909          262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-------CLNVFDHHNYVTCVQF---NP---IDDNYFISGS  328 (626)
Q Consensus       262 ~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~-------~~~~~~~~~~v~~~~~---~p---~~~~~l~s~s  328 (626)
                      ....+|.+.|.++++++ ++++|+|.|++|+|||..+..       ......|...+..+..   .+   .+..++++++
T Consensus         8 ~~~~~H~~~I~~v~~~~-~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             EESSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC-CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            45579999999999875 589999999999999976543       2233334444333322   11   1235688999


Q ss_pred             CCCcEEEEeCCCCe----EEE-------eccCCCCeEEEEEeeC-----CCEEEEEecCCcEEEEEcCCCcee-------
Q 006909          329 IDGKVRIWGVCEKR----VVD-------WADVRDVISAICYIPD-----GKGFIVGSITGTCHFYKASGNDLK-------  385 (626)
Q Consensus       329 ~dg~v~iwd~~~~~----~~~-------~~~~~~~i~~i~~sp~-----g~~l~~g~~dg~i~i~d~~~~~~~-------  385 (626)
                      .||.|++|++....    ...       ...+...+..+++.++     +.++++++.||.+++|++......       
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            99999999875422    111       1223456777888775     468899999999999998532110       


Q ss_pred             ----eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeee--e----ecCCCCCeEEEEEcCCCC
Q 006909          386 ----LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF--K----GLPKSGSQMSASFTTTGK  455 (626)
Q Consensus       386 ----~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~----~~~~~~~v~~~~~sp~g~  455 (626)
                          ............+...+++++|+|++  +|++|+.|++|+|||+.+.....  .    ...|..+|.+++|+|+|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence                11111122233445678999999996  89999999999999987543322  2    234788999999999999


Q ss_pred             EEEEEeCCc---cEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCc
Q 006909          456 HIISIGDDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPW  532 (626)
Q Consensus       456 ~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~  532 (626)
                      +|++|+.|+   .|++||++++...                     ..--.+.                   ........
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~---------------------~~l~~~~-------------------~~~~~~~~  284 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERI---------------------GSLSVPT-------------------HSSQASLG  284 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEE---------------------EEECBC---------------------------C
T ss_pred             eeeeecCCCCcceeeecccccceee---------------------eeecccc-------------------ccccceee
Confidence            999999886   4999999875210                     0000000                   00011122


Q ss_pred             ccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          533 IRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       533 ~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      ..+|...|++++|+|||++|++++. |++|++||+.++
T Consensus       285 ~~gH~~~V~~l~fspd~~~l~S~s~-D~~v~vWd~~~g  321 (393)
T d1sq9a_         285 EFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTK  321 (393)
T ss_dssp             CBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEETTTT
T ss_pred             eecccCceeeeccCCCCCeeEEECC-CCEEEEEECCCC
Confidence            4567778999999999999999998 899999999887

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=2e-22  Score=209.03  Aligned_cols=339  Identities=12%  Similarity=-0.034  Sum_probs=227.7

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEE
Q 006909          194 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  273 (626)
Q Consensus       194 ~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  273 (626)
                      -++++.+.||+|.|||..+                                             .+.+..+..| ..+..
T Consensus        33 ~~~v~~~d~g~v~v~D~~t---------------------------------------------~~v~~~~~~g-~~~~~   66 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGST---------------------------------------------YEIKTVLDTG-YAVHI   66 (432)
T ss_dssp             EEEEEETTTTEEEEEETTT---------------------------------------------CCEEEEEECS-SCEEE
T ss_pred             EEEEEEcCCCEEEEEECCC---------------------------------------------CcEEEEEeCC-CCeeE
Confidence            3568899999999999998                                             3446667666 36999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEeccCCCeee--Eeec----CCCCeEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCeEEE
Q 006909          274 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCL--NVFD----HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVD  345 (626)
Q Consensus       274 l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~--~~~~----~~~~v~~~~~~p~~~~~l-~s~s~dg~v~iwd~~~~~~~~  345 (626)
                      ++|+||| ++++++.|++|++||+.+++..  ..+.    |...+.+..|+| ++++| ++++.+++|++||..+++++.
T Consensus        67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~  145 (432)
T d1qksa2          67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKK  145 (432)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCcccccee
Confidence            9999998 8889999999999999877643  3333    444555566778 89875 678889999999999988765


Q ss_pred             ec------------cCCCCeEEEEEeeCCCEEEE-EecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909          346 WA------------DVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  412 (626)
Q Consensus       346 ~~------------~~~~~i~~i~~sp~g~~l~~-g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~  412 (626)
                      ..            .+......+.++|+|..+++ ...++.|.+|+..+.+.... ....     .+..+..++|+|+|.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~-~~i~-----~g~~~~~~~~spdg~  219 (432)
T d1qksa2         146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-TEIS-----AERFLHDGGLDGSHR  219 (432)
T ss_dssp             EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-EEEE-----CCSSEEEEEECTTSC
T ss_pred             eeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceE-EEEc-----ccCccccceECCCCC
Confidence            32            23455778899999987654 55678999999887654322 1112     125688999999984


Q ss_pred             cEEEEEeCCCcEEEEeCCcceeeeee-----cCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCCCCCCCccCCcc
Q 006909          413 QRIMITSEDSKLRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKNSVR  486 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~  486 (626)
                      .+++++..++.+.++|..........     ..+........+...+...++.. .++.|.+|+......+  .+.. ..
T Consensus       220 ~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~--~~~~-~v  296 (432)
T d1qksa2         220 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP--DNAW-KI  296 (432)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBT-SE
T ss_pred             EEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccc--cccc-EE
Confidence            44445555678999997754332221     12344455566665666665554 3789999987764222  1111 22


Q ss_pred             ceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909          487 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  566 (626)
Q Consensus       487 ~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd  566 (626)
                      ....++|++..++++.+|+...+|.....                  ..+.....++++ ||++.+++++. ++.+++|+
T Consensus       297 ~~~~~~~~g~~~~~~s~p~~~~lw~~~~~------------------~~~~~~~~sv~v-pDg~~la~~s~-d~~~k~w~  356 (432)
T d1qksa2         297 LDSFPALGGGSLFIKTHPNSQYLYVDATL------------------NPEAEISGSVAV-FDIKAMTGDGS-DPEFKTLP  356 (432)
T ss_dssp             EEEEECSCSCCCCEECCTTCSEEEEECTT------------------CSSHHHHTCEEE-EEGGGCCCSSS-CCCEEEEC
T ss_pred             EEEEEcCCCCeEEEEecCCccceeecccC------------------CCCCCeeeEEEE-Eechhhccccc-CCceEecc
Confidence            23456677777777777777777653321                  122233445554 99999999998 79999999


Q ss_pred             cccCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEec-----CCceEeeeeecCcc
Q 006909          567 VTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAG-----CDGMIKTFHNYGLP  623 (626)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g-----~Dg~Irvw~~~g~p  623 (626)
                      +.++             ..+ ..+....  .+|++ ||+.|+.+.     .||.|+||+--.+.
T Consensus       357 ~~~~-------------~~l-~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         357 IAEW-------------AGI-TEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             HHHH-------------HTC-CSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             cccc-------------ccc-CCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCce
Confidence            8654             111 1122222  45666 898775543     46889999865554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.6e-21  Score=202.24  Aligned_cols=332  Identities=10%  Similarity=0.060  Sum_probs=209.6

Q ss_pred             eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE------eccCCCCeE
Q 006909          281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD------WADVRDVIS  354 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~------~~~~~~~i~  354 (626)
                      ++++.+.||+|+|||+.+++.+..+.....+..++|+| +|+++++++.|++|++||+.+++...      ...+...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            46788899999999999999999998777899999999 99999999999999999998876332      124445566


Q ss_pred             EEEEeeCCCEEEEE-ecCCcEEEEEcCCCceeeeEEeec----cccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909          355 AICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFH----DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  429 (626)
Q Consensus       355 ~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~  429 (626)
                      +++|+|||++++++ ..++.+++||..............    .....+......+.+++++..++.+....+.+.+++.
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            77788999987654 578999999998876543321111    0111234556677888887555555555677777775


Q ss_pred             Cccee-eeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCCCCCCC---ccCCccceeeecc--CCcEEEEec
Q 006909          430 VDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSK---QKNSVRSCEHFFS--EGVSVAVQW  502 (626)
Q Consensus       430 ~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~~~---~~~~~~~~~~~~~--~g~~~av~~  502 (626)
                      ..... ......+...+..+.|+|++++++++.. +..+.+++..++......   ..........+..  .+...++..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (426)
T d1hzua2         193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH  272 (426)
T ss_dssp             SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred             ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence            53221 2222336678899999999999887764 567899999887322111   1111112222322  234445555


Q ss_pred             CCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccc-------cCCCCCCCCCCCcccCCCCCC
Q 006909          503 PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-------ATWPAEKLPLWDVTIDSDGYC  575 (626)
Q Consensus       503 s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s-------~~~~d~~i~vwd~~~~~~~~~  575 (626)
                      ++++.....-... .......|..   ...+.+++..+..++|+|||+++++       +.. +++|++||+.++. ...
T Consensus       273 ~~d~~v~~~~~~~-~~~~~~~~~~---~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~-~~tv~vwd~~t~~-~~~  346 (426)
T d1hzua2         273 LGDGSISLIGTDP-KNHPQYAWKK---VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI-SQSVAVFDLKNLD-AKY  346 (426)
T ss_dssp             TTTCEEEEEECCT-TTCTTTBTSE---EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHH-HTCEEEEETTCTT-SCC
T ss_pred             CCCceEEEeeccc-cccccccceE---eEEEecCCCceeEEEcCCCCceEEEeecCCCCccc-CCEEEEEECCCCC-cCe
Confidence            5555543321111 1111122222   2235567777999999999999884       233 5789999999873 111


Q ss_pred             CChhhHHHHhhhc-cCCcc--ccccccccceEE-EE----ecCCceEeeeeecCc
Q 006909          576 QDPQQQRLQQQCL-NNVDD--VRAISATWGLVI-VT----AGCDGMIKTFHNYGL  622 (626)
Q Consensus       576 ~~~~~~~~~~~~~-~~~~~--~~~~s~~dg~~i-vt----~g~Dg~Irvw~~~g~  622 (626)
                      .  ..+..+.... .+...  ..+|++ ||+.| ++    ++.||+|+||+..-+
T Consensus       347 ~--~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~  398 (426)
T d1hzua2         347 Q--VLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTL  398 (426)
T ss_dssp             E--EECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred             E--EeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECCCC
Confidence            0  0001111111 11111  235677 89866 44    357899999985543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=1e-20  Score=196.13  Aligned_cols=315  Identities=12%  Similarity=0.046  Sum_probs=205.6

Q ss_pred             CCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE--EEe----ccCC
Q 006909          278 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--VDW----ADVR  350 (626)
Q Consensus       278 ~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~--~~~----~~~~  350 (626)
                      +++ ++++.+.||+|.|||..+++++..+.....+..++|+| +|+++++++.|++|++||+.+++.  ...    ..+.
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~  108 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  108 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             CCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence            344 46899999999999999999999998667899999999 999999999999999999987652  221    2344


Q ss_pred             CCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEee----ccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 006909          351 DVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDF----HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  425 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~  425 (626)
                      +.+.+..|+|||++| +++..++.+++||..+.+........    ......+......+.++|+|..++++...++.|.
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence            455666778899986 67888999999999987764432110    0111224567788999999876777888899999


Q ss_pred             EEeCCccee-eeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecC
Q 006909          426 ILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  503 (626)
Q Consensus       426 iwd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s  503 (626)
                      +||..+... ......+...+..++|+|+|+++++++. ++.+.+++..+.............    .++.+ .....+.
T Consensus       189 ~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~----~~~~~-~~~~~~~  263 (432)
T d1qksa2         189 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT----PHPGR-GANFVHP  263 (432)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS----BCCTT-CEEEEET
T ss_pred             EEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccc----cccCc-ccceecC
Confidence            999765322 1222235567889999999998887775 457889998876322111111000    00111 1111222


Q ss_pred             CCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHH
Q 006909          504 GIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRL  583 (626)
Q Consensus       504 ~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  583 (626)
                      ..+........+  ...+..|.....  ....+...+....++|+|..+++++.| ...++|...+..            
T Consensus       264 ~~g~~~~~~~lg--~~~v~~~~~~~~--~~~~~~~~v~~~~~~~~g~~~~~~s~p-~~~~lw~~~~~~------------  326 (432)
T d1qksa2         264 TFGPVWATSHMG--DDSVALIGTDPE--GHPDNAWKILDSFPALGGGSLFIKTHP-NSQYLYVDATLN------------  326 (432)
T ss_dssp             TTEEEEEEEBSS--SSEEEEEECCTT--TCTTTBTSEEEEEECSCSCCCCEECCT-TCSEEEEECTTC------------
T ss_pred             CCCceecccccC--CceEEecccccc--cccccccEEEEEEEcCCCCeEEEEecC-CccceeecccCC------------
Confidence            222221111110  112233332221  122344456778899999999999985 778899765541            


Q ss_pred             HhhhccCCccccccccccceEEEEecCCceEeeeeec
Q 006909          584 QQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       584 ~~~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                           ++......+...|++.+++++.|+++++|++.
T Consensus       327 -----~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~  358 (432)
T d1qksa2         327 -----PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIA  358 (432)
T ss_dssp             -----SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHH
T ss_pred             -----CCCCeeeEEEEEechhhcccccCCceEecccc
Confidence                 11111112222489999999999999999853

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=4.5e-20  Score=191.16  Aligned_cols=322  Identities=11%  Similarity=0.018  Sum_probs=195.6

Q ss_pred             EcCCCC--EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeecc
Q 006909          189 FSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG  266 (626)
Q Consensus       189 fspdg~--~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (626)
                      +++|.+  ++++++.||+|+|||+.+                                             .+.+.++..
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t---------------------------------------------~~~~~~l~~   60 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDS---------------------------------------------KKIVKVIDT   60 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTT---------------------------------------------CSEEEEEEC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCC---------------------------------------------CcEEEEEeC
Confidence            444433  568888999999999998                                             345677776


Q ss_pred             CccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe--ec----CCCCeEEEEEeeCCCCEEEE-EeCCCcEEEEeC
Q 006909          267 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV--FD----HHNYVTCVQFNPIDDNYFIS-GSIDGKVRIWGV  338 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~--~~----~~~~v~~~~~~p~~~~~l~s-~s~dg~v~iwd~  338 (626)
                      |. .+..++|+||| +|++++.|++|++||+.+++....  +.    |...+.+++|+| +++++++ +..++.+++||.
T Consensus        61 g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~  138 (426)
T d1hzua2          61 GY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDG  138 (426)
T ss_dssp             CS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEET
T ss_pred             CC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEcC
Confidence            64 58999999999 788999999999999998875443  22    445566677788 8988654 557899999999


Q ss_pred             CCCeEEEec-c-----------CCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909          339 CEKRVVDWA-D-----------VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  405 (626)
Q Consensus       339 ~~~~~~~~~-~-----------~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l  405 (626)
                      .++.+.... .           +......+..++++..++....+ +.+.+++............      .+...+..+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~  212 (426)
T d1hzua2         139 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI------GAAPFLADG  212 (426)
T ss_dssp             TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE------ECCSSEEEE
T ss_pred             CccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe------ccCCccEee
Confidence            988766432 2           23334556666776666655443 4555555544332221111      124678999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEeCCcceee--eeecCCCCCeEEEEEcCCCC-EE--EEEeCCccEEEEECCCCCCCCCC
Q 006909          406 QFSRDESQRIMITSEDSKLRILDGVDVIHK--FKGLPKSGSQMSASFTTTGK-HI--ISIGDDCRVYVWNYDELCFPSSK  480 (626)
Q Consensus       406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~g~-~l--~s~s~dg~I~iwd~~~~~~~~~~  480 (626)
                      .|+|++..++++...+..+.+++..+....  ..............+.+.+. .+  ++.+.|+.+.+|+..........
T Consensus       213 ~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~  292 (426)
T d1hzua2         213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA  292 (426)
T ss_dssp             EECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTB
T ss_pred             eECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccccc
Confidence            999998555555667788999997754333  22222222233333333332 22  23345788889887764221110


Q ss_pred             --------ccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCC-----------cccCCCcccC
Q 006909          481 --------QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP-----------WIRDSERFSL  541 (626)
Q Consensus       481 --------~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~-----------~~~~~~~~~~  541 (626)
                              ........++|+|+|..+++......       +......+.+|+......           ....+...+.
T Consensus       293 ~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~-------s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~  365 (426)
T d1hzua2         293 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP-------DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV  365 (426)
T ss_dssp             TSEEEEEECSSSCCCCEECCTTCSEEEECCTTCS-------SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEE
T ss_pred             ceEeEEEecCCCceeEEEcCCCCceEEEeecCCC-------CcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEE
Confidence                    00111223345555555544322110       112234466666533211           1223445577


Q ss_pred             CccccCCCCcccccC----CCCCCCCCCCcccC
Q 006909          542 GSWFSNDGPCRGSAT----WPAEKLPLWDVTID  570 (626)
Q Consensus       542 ~~~~s~dg~~l~s~~----~~d~~i~vwd~~~~  570 (626)
                      +++|||||+++..+.    ..++.|.+||..+.
T Consensus       366 ~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~  398 (426)
T d1hzua2         366 QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL  398 (426)
T ss_dssp             EEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence            889999999764322    23678999999987

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=4.9e-19  Score=173.16  Aligned_cols=237  Identities=14%  Similarity=0.138  Sum_probs=182.6

Q ss_pred             CcEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909          182 GCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  260 (626)
Q Consensus       182 ~~V~~l~fspdg~~La-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (626)
                      +.+..++|+|||++|+ +++.++.|++||+.++                                             ..
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---------------------------------------------~~   66 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---------------------------------------------NV   66 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---------------------------------------------EE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---------------------------------------------ce
Confidence            4578999999999874 6678899999999873                                             33


Q ss_pred             ceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEeCCCcEEEEe
Q 006909          261 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWG  337 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg~v~iwd  337 (626)
                      +..+..|. .+..++|++++  .++++..++.+.+|+..+++....+.+...+.++.|+| ++..++ ++..++.+.+|+
T Consensus        67 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~  144 (301)
T d1l0qa2          67 IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVIN  144 (301)
T ss_dssp             EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred             eeeeeccc-cccccccccccccccccccccceeeecccccceeeeeccccccceEEEeec-CCCeeeeeeccccceeeee
Confidence            45555554 46889999887  55677788899999999999999998888899999999 777664 555678899999


Q ss_pred             CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       338 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      ..+............+..+.++|+++.++++..+ +.+.+|+...... ......       ...+..+++++++...++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~g~~~~v  216 (301)
T d1l0qa2         145 TVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-IDTVKV-------EAAPSGIAVNPEGTKAYV  216 (301)
T ss_dssp             TTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-------SSEEEEEEECTTSSEEEE
T ss_pred             ccccceeeecccCCCceEEEeeccccceeeecccccccccccccceee-eecccc-------cCCcceeecccccccccc
Confidence            9999988887888889999999999999888776 4556666655433 222222       246788999999854444


Q ss_pred             EEe--CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEE-EEEeCCccEEEEECCCC
Q 006909          417 ITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       417 ~~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~s~s~dg~I~iwd~~~~  474 (626)
                      ++.  .++.|++||..+........ ....+.+++|+|||++| ++++.|++|++||+.++
T Consensus       217 ~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         217 TNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             EEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ccccceeeeeeeeecCCCeEEEEEc-CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            332  34789999988655443332 34568999999999987 57778999999999886

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.83  E-value=7.3e-19  Score=171.91  Aligned_cols=268  Identities=13%  Similarity=0.089  Sum_probs=187.1

Q ss_pred             EEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee
Q 006909          282 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP  360 (626)
Q Consensus       282 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp  360 (626)
                      +++.+.|++|.+||+.+++.+..+.....+..++|+| ++++| ++++.++.|++||+.+++.+........+..+.+++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~   83 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP   83 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc
Confidence            4567889999999999999999998888889999999 99877 566788999999999999887766667789999999


Q ss_pred             CCCEEEE-EecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeec
Q 006909          361 DGKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL  439 (626)
Q Consensus       361 ~g~~l~~-g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  439 (626)
                      ++..+++ +..++.+.+|+..+...... +..       ...+.++.|+|++...++++..++.+.+|+..+........
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGT-VKT-------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEE-EEC-------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccceeeecccccceeeee-ccc-------cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc
Confidence            9987665 45667899999987764322 221       25678899999986666777788999999987655444332


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC-ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCcc
Q 006909          440 PKSGSQMSASFTTTGKHIISIGDD-CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLR  518 (626)
Q Consensus       440 ~~~~~v~~~~~sp~g~~l~s~s~d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~  518 (626)
                       ....+..+.++|+++++++++.+ +.+.+|+............           ......+++++++..++....+...
T Consensus       156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~v~~~~~~~  223 (301)
T d1l0qa2         156 -VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-----------EAAPSGIAVNPEGTKAYVTNVDKYF  223 (301)
T ss_dssp             -CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------SSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             -cCCCceEEEeeccccceeeecccccccccccccceeeeecccc-----------cCCcceeecccccccccccccccee
Confidence             34567889999999998888765 5677777765422111111           1122334444555444433333322


Q ss_pred             ccCccccccCCCCc-ccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909          519 DCSQKWDNLETAPW-IRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  570 (626)
Q Consensus       519 ~~~~~w~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~  570 (626)
                      ..+.+|+....... ....+..+.+++|+|||+++..+...++.|.+||+.++
T Consensus       224 ~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         224 NTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            33444444222110 11123346789999999987544333789999999887

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=3.6e-18  Score=169.56  Aligned_cols=228  Identities=9%  Similarity=0.033  Sum_probs=169.5

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec--cCccce
Q 006909          194 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH--GHKGDV  271 (626)
Q Consensus       194 ~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V  271 (626)
                      +||++++.|++|+|||+.+++                                             .+..+.  .+...+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~---------------------------------------------~~~~i~~~~~~~~~   36 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA---------------------------------------------VDKVITIADAGPTP   36 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE---------------------------------------------EEEEEECTTCTTCC
T ss_pred             eEEEEEcCCCEEEEEECCCCe---------------------------------------------EEEEEECCCCCCCc
Confidence            489999999999999999843                                             234443  344567


Q ss_pred             EEEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecC------CCCeEEEEEeeCCCCEEEEEe------------CCC
Q 006909          272 LDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDH------HNYVTCVQFNPIDDNYFISGS------------IDG  331 (626)
Q Consensus       272 ~~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~------~~~v~~~~~~p~~~~~l~s~s------------~dg  331 (626)
                      .+++|+||| ++ ++++.++.|.+||+.+++.+..+..      ...+..++|+| ++++++++.            .++
T Consensus        37 ~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T d1pbyb_          37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCC
T ss_pred             cEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeecccccc
Confidence            889999998 54 5677899999999999999887742      23455789999 999988776            357


Q ss_pred             cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc------------------
Q 006909          332 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD------------------  393 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~------------------  393 (626)
                      .+.+||..+++..........+..++|+|+|+++++++.  .+.+||..+...... .....                  
T Consensus       116 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  192 (337)
T d1pbyb_         116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVED-KPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEE-ECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             ceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEE-eecCCccccceecCCcceeeccc
Confidence            899999999998887778888999999999999999864  467788765432211 00000                  


Q ss_pred             ------------------------------------------ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          394 ------------------------------------------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       394 ------------------------------------------~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                                                                ....+...+..+.++|++ .+++++  ++.|++||+.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~  269 (337)
T d1pbyb_         193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTT
T ss_pred             cccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCC
Confidence                                                      000122344556677775 455444  58999999886


Q ss_pred             ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          432 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       432 ~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ........ +...+.+++|+|||++|++++.|+.|+|||..+.
T Consensus       270 ~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         270 NASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             TEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             CcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            55444432 4567889999999999999999999999999986

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=1.2e-17  Score=166.31  Aligned_cols=233  Identities=9%  Similarity=-0.035  Sum_probs=156.0

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec-
Q 006909          187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-  265 (626)
Q Consensus       187 l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  265 (626)
                      ++|+++++||++++.|++|.|||+.++                                             +.+.++. 
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~---------------------------------------------~~~~t~~~   36 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD---------------------------------------------TVYKSCVM   36 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT---------------------------------------------EEEEEEEC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC---------------------------------------------CEEEEEEc
Confidence            478999999999999999999999983                                             3345554 


Q ss_pred             cCccceEEEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCC-------CCeEEEEEeeCCCCEEEEEe--------
Q 006909          266 GHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHH-------NYVTCVQFNPIDDNYFISGS--------  328 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~p~~~~~l~s~s--------  328 (626)
                      .|...+.+++|+||| ++ ++++.++.|.+||+.+++.+..+...       ..+..++|+| +++++++++        
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~  115 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLND  115 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSS
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceee
Confidence            456678899999998 44 56678999999999999988776422       2356789999 888887764        


Q ss_pred             ----CCCcEEEEeCCCCeEEE---eccCCCCeEEE--------------------------------------EEeeCCC
Q 006909          329 ----IDGKVRIWGVCEKRVVD---WADVRDVISAI--------------------------------------CYIPDGK  363 (626)
Q Consensus       329 ----~dg~v~iwd~~~~~~~~---~~~~~~~i~~i--------------------------------------~~sp~g~  363 (626)
                          .++.+.+||..+++...   .......+..+                                      .++|++.
T Consensus       116 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (346)
T d1jmxb_         116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL  195 (346)
T ss_dssp             CEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred             eeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEecccc
Confidence                35667888776543211   00111111112                                      2233332


Q ss_pred             EEE--------------------------EEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          364 GFI--------------------------VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       364 ~l~--------------------------~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      .++                          ++..++.+.+|++.+..........      +...+..+.+++++. +++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~  268 (346)
T d1jmxb_         196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPKDP-NQIY  268 (346)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE------CSSCEEEEEECSSCT-TEEE
T ss_pred             EEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeec------ccceeEEEEEeCCCC-EEEE
Confidence            221                          1122234555555554433322222      235778888998874 4554


Q ss_pred             EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .. ++.|.+||..+........ ....+.+++|+|||++|++++.|+.|+|||..++
T Consensus       269 ~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         269 GV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             EE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             ec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence            44 4689999987654333322 3457899999999999999999999999999886

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=7.3e-17  Score=160.00  Aligned_cols=280  Identities=11%  Similarity=0.093  Sum_probs=172.4

Q ss_pred             eEEEEeCCCcEEEeccCCC---eeeEeecCCCCeEEEEEeeCCCCEEEEEe-CCCcEEEEeCCCCe----EEEeccCCCC
Q 006909          281 YLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKR----VVDWADVRDV  352 (626)
Q Consensus       281 ~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~v~iwd~~~~~----~~~~~~~~~~  352 (626)
                      .+++++.|++|++|++...   +.++.+.+...+..++|+| ++++|++++ .|+.|++|++....    ..........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            4678889999999998654   3445667899999999999 999886555 58999999987542    3334445566


Q ss_pred             eEEEEEeeCCCEEEEEec-CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          353 ISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       353 i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      +..++|+|||++|++++. ++.+.+|+..............     +...+.++.++|++...+.....+..|.+|+...
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-----GLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-----CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccC-----CCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            788999999999999875 6789999987765443322222     2356788999999844444445567899998653


Q ss_pred             cee------eeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCC
Q 006909          432 VIH------KFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  504 (626)
Q Consensus       432 ~~~------~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~  504 (626)
                      ...      ..........+..++|++++.+++... ..+...+|++...................+.........++++
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  239 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  239 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec
Confidence            211      111233455678899999999887665 4567888887654211110000000000011112233444555


Q ss_pred             CCcccccccCCCccccCccccccCCC-----CcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909          505 IGTEQKSLCSSSLRDCSQKWDNLETA-----PWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  568 (626)
Q Consensus       505 ~~~~l~~~~~~~~~~~~~~w~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~  568 (626)
                      ++..++.......  ...+|......     ......+....+++|+|||++++++...++.|.+|++.
T Consensus       240 d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         240 DGRHLYACDRTAS--LITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             TSSEEEEEETTTT--EEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ccCceeeecccCC--eEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            5554443322111  11111111110     01122334567899999999887766546889999553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.73  E-value=4.5e-18  Score=169.54  Aligned_cols=296  Identities=9%  Similarity=-0.002  Sum_probs=183.5

Q ss_pred             EEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCeEEEeccC
Q 006909          274 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVDWADV  349 (626)
Q Consensus       274 l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~  349 (626)
                      ++|++++ +|++++.+++|.+||+.+++.+.++.  +...+.+++|+| +++++ ++++.++.|++||+.+++.......
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            4678887 89999999999999999999998775  456788999999 99886 5556789999999999887753332


Q ss_pred             C-------CCeEEEEEeeCCCEEEEEe------------cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          350 R-------DVISAICYIPDGKGFIVGS------------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       350 ~-------~~i~~i~~sp~g~~l~~g~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      .       ..+..++|+|||++++++.            .++.+.+|+..+...........     ....+..+.++++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  155 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-----MPRQVYLMRAADD  155 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-----CCSSCCCEEECTT
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-----ccCceEEEEecCC
Confidence            2       2356789999999998875            36678888887665432211111     1245566677777


Q ss_pred             CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCCCCCCCccCCcccee
Q 006909          411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKNSVRSCE  489 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~  489 (626)
                      + ..+ +.  ++.+.+|+..+........ .......+.++|++..++... .++.+.+++.......            
T Consensus       156 ~-~~~-~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  218 (346)
T d1jmxb_         156 G-SLY-VA--GPDIYKMDVKTGKYTVALP-LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD------------  218 (346)
T ss_dssp             S-CEE-EE--SSSEEEECTTTCCEEEEEC-STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------------
T ss_pred             C-EEE-Ee--CCcceEEEccCCCEEEEEe-cCCCccceEEeccccEEEEEecCCCceEeeeeeeeecc------------
Confidence            5 333 33  3568899976544333322 234455667788887665443 4556666654321000            


Q ss_pred             eeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909          490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  569 (626)
Q Consensus       490 ~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~  569 (626)
                          ....+..+.......++........           .....++...+....+++++.+++....  +.|.+||..+
T Consensus       219 ----~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~v~d~~~  281 (346)
T d1jmxb_         219 ----DKQDPATADLLYGYLSVDLKTGKTH-----------TQEFADLTELYFTGLRSPKDPNQIYGVL--NRLAKYDLKQ  281 (346)
T ss_dssp             ---------CCCEEEEEEEEEETTTCCEE-----------EEEEEECSSCEEEEEECSSCTTEEEEEE--SEEEEEETTT
T ss_pred             ----CceeEeeccCCceEEEEECCCCceE-----------EEEeecccceeEEEEEeCCCCEEEEecC--CeEEEEECCC
Confidence                0000000000000011111111000           0012233445666778888887776553  5799999988


Q ss_pred             CCCCCCCChhhHHHHhhhccCCccccccccccceEEEEecCCceEeeeeec
Q 006909          570 DSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~~  620 (626)
                      +.          ........+.....++++ ||++|++++.||.|++|+.-
T Consensus       282 ~~----------~~~~~~~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         282 RK----------LIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPD  321 (346)
T ss_dssp             TE----------EEEEEECSSCCCEEEECS-SSSCEEEESBSSEEEEEETT
T ss_pred             Cc----------EEEEEcCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECc
Confidence            72          111112223334467777 89999999999999999964

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=9.1e-16  Score=151.90  Aligned_cols=252  Identities=12%  Similarity=0.156  Sum_probs=172.1

Q ss_pred             cccCcEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          179 AHKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .|.+.|..|+|||||++|++++ .|+.|++|++.......                                        
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~----------------------------------------   73 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------------------------------------   73 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------------------------------
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE----------------------------------------
Confidence            6889999999999999986555 58999999997632110                                        


Q ss_pred             CCCceeeccCccceEEEEEcCCC-eEEEEe-CCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCC-C
Q 006909          258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSID-G  331 (626)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~d-g  331 (626)
                        .......+...+..++|+|+| +|++++ .++.|.+|+..........   .+...+.++.++| +++++++++.+ .
T Consensus        74 --~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~  150 (333)
T d1ri6a_          74 --TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQD  150 (333)
T ss_dssp             --EEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGT
T ss_pred             --EEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccc
Confidence              011112344567789999998 677666 4678999988766554443   4667888999999 99888877754 5


Q ss_pred             cEEEEeCCCCeEE-------EeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeee---EEeeccccccCCC
Q 006909          332 KVRIWGVCEKRVV-------DWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE---KVDFHDRKKTSGN  400 (626)
Q Consensus       332 ~v~iwd~~~~~~~-------~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~  400 (626)
                      .|.+|+.......       ...........+.|++++..++... ..+...+++.........   .............
T Consensus       151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (333)
T d1ri6a_         151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  230 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccc
Confidence            6899987654321       1223445678899999998887655 456788888765443322   1111111222335


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--e-eeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCC
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGVDV--I-HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDE  473 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~  473 (626)
                      ....+++++++...++++..++.+.+|+....  . ...........+..++|+|||++|++++ .++.|.+|+++.
T Consensus       231 ~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         231 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             cceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            67788999998666667777889999986522  2 2222222445678899999999988775 468999997653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=2.6e-17  Score=163.30  Aligned_cols=277  Identities=11%  Similarity=0.048  Sum_probs=168.4

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEecc---CCCCeEEEEEeeCCCEEE-EEecCCcEEEEEcCCCceeeeEEeecccccc
Q 006909          322 NYFISGSIDGKVRIWGVCEKRVVDWAD---VRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKT  397 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  397 (626)
                      +++++++.|++|++||+.+++++....   +...+.+++|+|||++++ +++.++.|.+||+.+++.... ..... ...
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~-~~~~~-~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR-IDLST-PEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE-EECCB-TTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEE-EecCC-Ccc
Confidence            589999999999999999998876442   345678999999999875 567889999999998876433 22221 111


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEe------------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCcc
Q 006909          398 SGNKITGIQFSRDESQRIMITS------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  465 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~  465 (626)
                      +...+..++|+|++ .+++++.            .++.+.+||........... ....+..++|+|+|+++++++.+  
T Consensus        80 ~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--  155 (337)
T d1pbyb_          80 RVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGRD--  155 (337)
T ss_dssp             EEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESSS--
T ss_pred             cccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcCC--
Confidence            12345679999998 5666654            45788899977654443332 34567889999999999998754  


Q ss_pred             EEEEECCCCCCCCCCccCCccceeeeccCCcEEEE-------------ecCCCCcccccccCCCccccCccccccCCC--
Q 006909          466 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV-------------QWPGIGTEQKSLCSSSLRDCSQKWDNLETA--  530 (626)
Q Consensus       466 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av-------------~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~--  530 (626)
                      +.+||..++................+.+++..+..             ....+.......   .....+..|+.....  
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  232 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT---AYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG---GEEEEEEEEETTTCCEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeec---ccCccEEEEEcCCCcEE
Confidence            77899887632211111111111122222221110             001111111100   001112222221111  


Q ss_pred             -CcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEec
Q 006909          531 -PWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAG  609 (626)
Q Consensus       531 -~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g  609 (626)
                       ....++.......+++|++.++..+.   +.|.+||+.++.          ..............++++ ||.+|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~s~-dG~~l~v~~  298 (337)
T d1pbyb_         233 MREVRIMDVFYFSTAVNPAKTRAFGAY---NVLESFDLEKNA----------SIKRVPLPHSYYSVNVST-DGSTVWLGG  298 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEE---SEEEEEETTTTE----------EEEEEECSSCCCEEEECT-TSCEEEEES
T ss_pred             EEEecCCCcceEEEEecccceEEEEcc---ccEEEEECCCCc----------EEEEEcCCCCEEEEEECC-CCCEEEEEe
Confidence             11223344456678889988776653   579999999872          111112223333456777 899999999


Q ss_pred             CCceEeeeeecC
Q 006909          610 CDGMIKTFHNYG  621 (626)
Q Consensus       610 ~Dg~Irvw~~~g  621 (626)
                      .||+|++|+..-
T Consensus       299 ~~~~i~v~D~~t  310 (337)
T d1pbyb_         299 ALGDLAAYDAET  310 (337)
T ss_dssp             BSSEEEEEETTT
T ss_pred             CCCcEEEEECCC
Confidence            999999999653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.70  E-value=9e-15  Score=147.44  Aligned_cols=234  Identities=12%  Similarity=-0.060  Sum_probs=150.5

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          178 QAHKGCIWTLKFSPDGRYLASGG-----EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       178 ~~H~~~V~~l~fspdg~~Latgs-----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      .+|.+++.+++++|||+.++...     .++.|.+||..++                                       
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg---------------------------------------   57 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG---------------------------------------   57 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC---------------------------------------
Confidence            46899999999999999887642     3457999998874                                       


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eEEEEe----------CCCcEEEeccCCCeeeEeecC-CCC-------eEE
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDH-HNY-------VTC  313 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s----------~d~~v~iwd~~~~~~~~~~~~-~~~-------v~~  313 (626)
                            +.+.++..+..+  .++|+||| +|++++          .++.|.+||..+++.+..+.. ...       ...
T Consensus        58 ------~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~  129 (373)
T d2madh_          58 ------SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWM  129 (373)
T ss_pred             ------CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCc
Confidence                  334455544433  68999998 666653          467899999999999877742 222       245


Q ss_pred             EEEeeCCCCEEEEEe--CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEe
Q 006909          314 VQFNPIDDNYFISGS--IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVD  390 (626)
Q Consensus       314 ~~~~p~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~  390 (626)
                      +.|++ +++.++...  .++.+.+|+....+....   .....++.++|+|+.+ ++.+.|+.+.+|+............
T Consensus       130 ~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~  205 (373)
T d2madh_         130 NANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQL---LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG  205 (373)
T ss_pred             EEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEE---eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence            78888 777665554  356788898877665433   3345678899998765 5788899999999987765433221


Q ss_pred             eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee--eeeecCCCCCeEEEEEcCCCCEEEEEeCCcc
Q 006909          391 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCR  465 (626)
Q Consensus       391 ~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~  465 (626)
                      .. ...........+.+.+++  .++..+.++.+.+|+......  ...............+.|.+...++.+.|+.
T Consensus       206 ~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  279 (373)
T d2madh_         206 AM-LTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD  279 (373)
T ss_pred             ec-cccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCC
Confidence            11 111112233445566654  667778899999998664321  1111223333444444454444444444443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=6e-15  Score=148.75  Aligned_cols=297  Identities=8%  Similarity=-0.013  Sum_probs=184.4

Q ss_pred             eccCccceEEEEEcCCC-eEEEE-----eCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe---------
Q 006909          264 LHGHKGDVLDLAWSNSN-YLLSC-----SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS---------  328 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~~-~l~s~-----s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s---------  328 (626)
                      ...+..++..++++|++ .++..     +..+.|.+||..+++.+..+.... ...++|+| ++++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-~~~~a~Sp-DG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-LPNPVAAH-SGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC-CccEEEcC-CCCEEEEEeecCCccccc
Confidence            34688899999999998 55433     234679999999999998875322 33799999 999998875         


Q ss_pred             -CCCcEEEEeCCCCeEEEeccCC-C-------CeEEEEEeeCCCEEEEEec--CCcEEEEEcCCCceeeeEEeecccccc
Q 006909          329 -IDGKVRIWGVCEKRVVDWADVR-D-------VISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKT  397 (626)
Q Consensus       329 -~dg~v~iwd~~~~~~~~~~~~~-~-------~i~~i~~sp~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~  397 (626)
                       .++.|.+||+.+++.+...... .       ....+.|+++++.+++...  ++.+.+|+....+....          
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----------  163 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----------  163 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE----------
Confidence             3578999999998876543222 1       2345788999987776543  56788888776543211          


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee--eee----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909          398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK--FKG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  471 (626)
Q Consensus       398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~  471 (626)
                       .....++.++|+|...+++.+.|+.+.+|+.......  ...    .........+.+++++.++ ..+.++.+++|+.
T Consensus       164 -~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~  241 (373)
T d2madh_         164 -LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADI  241 (373)
T ss_pred             -eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEc
Confidence             1346788999998777889999999999997643222  111    1122233455666666554 5567899999998


Q ss_pred             CCCCCCCCCccC---CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCC
Q 006909          472 DELCFPSSKQKN---SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSND  548 (626)
Q Consensus       472 ~~~~~~~~~~~~---~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~d  548 (626)
                      .+..........   .......+.|.+ ...+++++++..++.                                 +.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~---------------------------------~~~~  287 (373)
T d2madh_         242 SAAGATNKAPIDALSGGRKADTWRPGG-WQQVAYLKSSDGIYL---------------------------------LTSE  287 (373)
T ss_pred             CCCeEEEEEeeccccCcEEeeeeccCc-ceeeEEecCCCeEEE---------------------------------ecCC
Confidence            875211111000   000011111211 123333444333221                                 1222


Q ss_pred             CCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccce--EEEEecCCceEeeeeec
Q 006909          549 GPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGL--VIVTAGCDGMIKTFHNY  620 (626)
Q Consensus       549 g~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~--~ivt~g~Dg~Irvw~~~  620 (626)
                      +..+++... ++.+.+||..++.          ....+.........+|++ ||+  ++|+++.|++|++|+..
T Consensus       288 ~~~~~~~~~-~~~v~~~d~~t~~----------~~~~~~~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         288 QSAWKLHAA-AKEVTSVTGLVGQ----------TSSQISLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CceEEeecC-CCeEEEEECCCCc----------EEEEecCCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECC
Confidence            333444443 4678889988872          111222233344467777 786  56899999999999964

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=3.9e-14  Score=141.40  Aligned_cols=241  Identities=13%  Similarity=0.049  Sum_probs=156.0

Q ss_pred             EEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909          185 WTLKFSPDGRYLASGG-----EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  259 (626)
Q Consensus       185 ~~l~fspdg~~Latgs-----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (626)
                      .-.+.+|||+.++...     .+..|.+||..+++                                             
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~---------------------------------------------   39 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR---------------------------------------------   39 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE---------------------------------------------
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCc---------------------------------------------
Confidence            3345689999887653     35679999998743                                             


Q ss_pred             CceeeccCccceEEEEEcCCC-eEEEE----------eCCCcEEEeccCCCeeeEeec--------CCCCeEEEEEeeCC
Q 006909          260 PLQELHGHKGDVLDLAWSNSN-YLLSC----------SMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPID  320 (626)
Q Consensus       260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~----------s~d~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~p~~  320 (626)
                      .+.++..+..  ..++|+||| +|+++          +.|+.|++||+.+++.+..+.        .......++|+| +
T Consensus        40 ~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d  116 (355)
T d2bbkh_          40 VIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-D  116 (355)
T ss_dssp             EEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-T
T ss_pred             EEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec-C
Confidence            3444444433  368999998 45543          457899999999999887763        122345689999 9


Q ss_pred             CCEEEEEe--CCCcEEEEeCCCCeEEEeccCC----------------------------------------------CC
Q 006909          321 DNYFISGS--IDGKVRIWGVCEKRVVDWADVR----------------------------------------------DV  352 (626)
Q Consensus       321 ~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~----------------------------------------------~~  352 (626)
                      +++++.++  .+..+.+|+..+++........                                              ..
T Consensus       117 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~  196 (355)
T d2bbkh_         117 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL  196 (355)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB
T ss_pred             CCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecce
Confidence            98887765  4567899999887654321110                                              01


Q ss_pred             eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccc----cccCCCCeEEEEEcCCCCcEEEEEeCC------
Q 006909          353 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDR----KKTSGNKITGIQFSRDESQRIMITSED------  421 (626)
Q Consensus       353 i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~----~~~~~~~i~~l~~s~~~~~~l~~~s~d------  421 (626)
                      +....+.+++..++.++.++.+++|++..+..... ....+..    ..........+++++++. .++....+      
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~-~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD-RIYLLVDQRDEWRH  275 (355)
T ss_dssp             CSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT-EEEEEEEECCTTCT
T ss_pred             eeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC-eEEEEeccCCceee
Confidence            22334555666777888889999999887654322 1111100    000112334588999984 55444332      


Q ss_pred             ----CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC--EEEEEeCCccEEEEECCCCC
Q 006909          422 ----SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       422 ----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~s~s~dg~I~iwd~~~~~  475 (626)
                          ..|.+||..+....-... ....+.+++|+|||+  ++++++.|+.|++||+.++.
T Consensus       276 ~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         276 KTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             cCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence                479999977543322221 234578999999998  45677789999999999874

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=6.2e-15  Score=147.40  Aligned_cols=192  Identities=10%  Similarity=0.014  Sum_probs=123.9

Q ss_pred             EEcCCC-eEEEE-----eCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe----------CCCcEEEEeC
Q 006909          275 AWSNSN-YLLSC-----SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----------IDGKVRIWGV  338 (626)
Q Consensus       275 ~~s~~~-~l~s~-----s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s----------~dg~v~iwd~  338 (626)
                      +.+|++ .++..     ..+.+|.+||..+++.+.++... ....++|+| ++++|++++          .++.|++||+
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-~~~~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLPNPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSCEEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-CCCceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            456887 55443     34567999999999998887522 233799999 999887643          4789999999


Q ss_pred             CCCeEEEecc--------CCCCeEEEEEeeCCCEEEEEe--cCCcEEEEEcCCCceeeeEEeeccc-cccCCCCeEEEEE
Q 006909          339 CEKRVVDWAD--------VRDVISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDR-KKTSGNKITGIQF  407 (626)
Q Consensus       339 ~~~~~~~~~~--------~~~~i~~i~~sp~g~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~  407 (626)
                      .+++......        .......+.|+|+|++++++.  .+..+.+|+..+...... +..... ..........+.+
T Consensus        86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM-LDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE-EECCSEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeE-EecCCcceEeecCCcceEEE
Confidence            9988765321        122345689999999988875  456889999987765332 211110 0000123334566


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          408 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++++..+++....++.+.+++.....     ..+...+....+.+++..++.++.++.+++|++..+
T Consensus       165 ~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             cCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence            66654333334444555555533211     112333455677888899999999999999999876

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.55  E-value=3.5e-13  Score=140.47  Aligned_cols=143  Identities=12%  Similarity=0.125  Sum_probs=108.7

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec
Q 006909          186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  265 (626)
Q Consensus       186 ~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (626)
                      .+.|.++++++..  .|+.+.+||+.+++.... +                                       .-..+.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~-~---------------------------------------~~~~~~   58 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVF-L---------------------------------------ENSTFD   58 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEE-E---------------------------------------CTTTTT
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEE-E---------------------------------------chhhhh
Confidence            4779999988764  578899999998643211 0                                       012445


Q ss_pred             cCccceEEEEEcCCC-eEEEEe---------CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          266 GHKGDVLDLAWSNSN-YLLSCS---------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s~s---------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      .|...|.++.||||+ +|+.++         .++.+.+||+.+++......+...+..+.|+| +|+.+|... ++.+++
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SP-DG~~ia~~~-~~~l~~  136 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYV  136 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEE
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccccccccc-CcceeeEee-cccceE
Confidence            677889999999998 677664         35678999999998766667888999999999 999999865 678999


Q ss_pred             EeCCCCeEEEecc-------------------CCCCeEEEEEeeCCCEEEEEecCC
Q 006909          336 WGVCEKRVVDWAD-------------------VRDVISAICYIPDGKGFIVGSITG  372 (626)
Q Consensus       336 wd~~~~~~~~~~~-------------------~~~~i~~i~~sp~g~~l~~g~~dg  372 (626)
                      |+..++.......                   ..+....+.|+|||++|+....|.
T Consensus       137 ~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             EECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence            9999887654322                   123345688999999999987653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.45  E-value=5.7e-14  Score=141.30  Aligned_cols=329  Identities=12%  Similarity=-0.000  Sum_probs=185.6

Q ss_pred             EEEEeCCCcEEEEEcCCCcceee--eecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEE
Q 006909          196 LASGGEDGVVRIWHVTSVAASCK--SFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  273 (626)
Q Consensus       196 Latgs~Dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  273 (626)
                      ++||+.+|.|+||++.+++....  .|++++............+...                 ......-..|......
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~-----------------~~~~~~gd~hhP~~s~   76 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGG-----------------DQQYLNGDCHHPHISM   76 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCS-----------------SSCCSCCCBCCCEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEec-----------------ccccccCcccCCCcce
Confidence            67888999999999998766433  2344433322221111111000                 0011112235555566


Q ss_pred             EEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCC--EEEEEeCCC----------------
Q 006909          274 LAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDN--YFISGSIDG----------------  331 (626)
Q Consensus       274 l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~--~l~s~s~dg----------------  331 (626)
                      ..++||| +| ++...+.+|.++|+.++++...+.  +...+..++|+| +++  +++..+.+.                
T Consensus        77 t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~  155 (441)
T d1qnia2          77 TDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSY  155 (441)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEE
T ss_pred             ecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCccccccccccc
Confidence            6667888 45 455678899999999999887654  667899999999 887  444444332                


Q ss_pred             -cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC-cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          332 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       332 -~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                       .+..+|..+.+.............+.++|+|+++++.+.+. .+..++..+.... ..+...       .....+.++|
T Consensus       156 ~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~-d~i~v~-------n~p~~~~~~~  227 (441)
T d1qnia2         156 TMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR-DWVVVF-------NVERIAAAVK  227 (441)
T ss_dssp             EEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB-CEEEEE-------EHHHHHHHHH
T ss_pred             ceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceE-EEEEeC-------CccceEEEec
Confidence             23457877777665555566788899999999999888664 2322333222211 111111       1112234677


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEE-EeCCccEEEEECCCCCCCCCCccCCccce
Q 006909          410 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDELCFPSSKQKNSVRSC  488 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s-~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  488 (626)
                      +| +++. .+.++.+.+++........... -......+.++|||+++++ +..+++|.|||+.+.......... ...+
T Consensus       228 dG-k~~~-v~~~~v~vvd~~~~~~v~~~IP-vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~-~~~~  303 (441)
T d1qnia2         228 AG-NFKT-IGDSKVPVVDGRGESEFTRYIP-VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIE-LRDT  303 (441)
T ss_dssp             TT-CCBC-CTTCCCCEEECSSSCSSEEEEC-CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSC-GGGG
T ss_pred             CC-CEEE-eCCCCcEEEEcccCCceEEEEe-CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCC-cceE
Confidence            87 4443 3446677777654322222222 2344678999999998765 567899999999764222122221 1122


Q ss_pred             eeeccCCc--EEEEecCCCCcccccccCCCccccCccccc---------------cC--CCCcccCCCcccCCccccCCC
Q 006909          489 EHFFSEGV--SVAVQWPGIGTEQKSLCSSSLRDCSQKWDN---------------LE--TAPWIRDSERFSLGSWFSNDG  549 (626)
Q Consensus       489 ~~~~~~g~--~~av~~s~~~~~l~~~~~~~~~~~~~~w~~---------------~~--~~~~~~~~~~~~~~~~~s~dg  549 (626)
                      +...++..  .+..+|.++|....++..+   ..+..|+.               ..  ......+|...+.+.+|+|||
T Consensus       304 ~~~~~~~glgplh~~fd~~g~~yts~~~d---s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG  380 (441)
T d1qnia2         304 IVAEPELGLGPLHTTFDGRGNAYTTLFID---SQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG  380 (441)
T ss_dssp             EEECCBCCSCEEEEEECSSSEEEEEETTT---TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC
T ss_pred             EEeecccccCcccceecCCceEEEccccc---ceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC
Confidence            22222110  1334455554433222221   11222221               11  011236777889999999999


Q ss_pred             CcccccCC
Q 006909          550 PCRGSATW  557 (626)
Q Consensus       550 ~~l~s~~~  557 (626)
                      ++|+++..
T Consensus       381 k~l~s~~k  388 (441)
T d1qnia2         381 KWLVVLSK  388 (441)
T ss_dssp             CEEEEEES
T ss_pred             cEEEecCc
Confidence            99999853

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=3.9e-11  Score=120.24  Aligned_cols=256  Identities=7%  Similarity=-0.067  Sum_probs=151.9

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCC
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  243 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (626)
                      ..++.+|...  .++|+|||++|++++          .|+.|++||..+++.....-.+...                  
T Consensus        59 ~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~------------------  118 (368)
T d1mdah_          59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP------------------  118 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC------------------
T ss_pred             EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc------------------
Confidence            3344455444  589999999888764          3678999999885442211100000                  


Q ss_pred             CceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEe-CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCC
Q 006909          244 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD  321 (626)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~  321 (626)
                                          ..........++|+||| +|+.+. .++.+.+||+.+++.+..+......   .+.|...
T Consensus       119 --------------------~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~  175 (368)
T d1mdah_         119 --------------------RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF---HIHPGAA  175 (368)
T ss_dssp             --------------------SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC---CCEEEET
T ss_pred             --------------------eecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc---eEccCCC
Confidence                                00011122358999998 566554 6799999999999998887533221   1222245


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEE-------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeE-Eeecc
Q 006909          322 NYFISGSIDGKVRIWGVCEKRVVD-------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VDFHD  393 (626)
Q Consensus       322 ~~l~s~s~dg~v~iwd~~~~~~~~-------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~~~  393 (626)
                      ..++..+.||++.++++.......       ...+...+....+.+++..+.  ...+.+.+++.......... .....
T Consensus       176 ~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (368)
T d1mdah_         176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW--AVASSILQGDIPAAGATMKAAIDGNE  253 (368)
T ss_dssp             TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE--CBSSCCEEEECCSSCCEEECCCCSSC
T ss_pred             ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE--ecCCCEEEEeecCCceEEEeeccccc
Confidence            677778888998888876543221       122333445566777765444  34566777777655443221 10000


Q ss_pred             c----cccCCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-E-EEE
Q 006909          394 R----KKTSGNKITGIQFSRDESQRIMITSED--------SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-H-IIS  459 (626)
Q Consensus       394 ~----~~~~~~~i~~l~~s~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~-l~s  459 (626)
                      .    ..........+++++++...+++...+        ..|.+||..+....... .....+..++|+|||+ + +++
T Consensus       254 ~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-EEEEEECEEEECCSSSCEEEEE
T ss_pred             ceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe-cCCCceeEEEECCCCCEEEEEE
Confidence            0    000012234578899875444433222        35889998755332222 1335678899999997 3 456


Q ss_pred             EeCCccEEEEECCCCC
Q 006909          460 IGDDCRVYVWNYDELC  475 (626)
Q Consensus       460 ~s~dg~I~iwd~~~~~  475 (626)
                      +..|+.|++||..++.
T Consensus       333 ~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         333 SAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             ETTTTEEEEEESSSCE
T ss_pred             eCCCCeEEEEECCCCC
Confidence            6778999999999873

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.25  E-value=3.5e-10  Score=117.23  Aligned_cols=111  Identities=10%  Similarity=0.140  Sum_probs=85.2

Q ss_pred             ccccccccCcEEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCC
Q 006909          174 SQEIQAHKGCIWTLKFSPDGRYLASGGE---------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  244 (626)
Q Consensus       174 ~~~l~~H~~~V~~l~fspdg~~Latgs~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (626)
                      .++|..|...|.++.|||||++||.++.         ++.+.|||+.++                               
T Consensus        54 ~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~-------------------------------  102 (470)
T d2bgra1          54 NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-------------------------------  102 (470)
T ss_dssp             TTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-------------------------------
T ss_pred             hhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC-------------------------------
Confidence            4566788899999999999999998853         467788998863                               


Q ss_pred             ceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-----------------
Q 006909          245 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----------------  306 (626)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-----------------  306 (626)
                                     .+..+..|...+..+.||||| .++. ..++.+.+|+..+++..+...                 
T Consensus       103 ---------------~~~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~  166 (470)
T d2bgra1         103 ---------------QLITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (470)
T ss_dssp             ---------------EECCSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             ---------------cccccccCCccccccccccCcceeeE-eecccceEEECCCCceeeeeeccCCCcccccccceeee
Confidence                           244566788899999999999 5555 567789999999887665432                 


Q ss_pred             --CCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909          307 --HHNYVTCVQFNPIDDNYFISGSIDGK  332 (626)
Q Consensus       307 --~~~~v~~~~~~p~~~~~l~s~s~dg~  332 (626)
                        .......+.|+| ++++|++...|.+
T Consensus       167 ~~~~~~~~~~~wSP-DGk~ia~~~~d~~  193 (470)
T d2bgra1         167 EEVFSAYSALWWSP-NGTFLAYAQFNDT  193 (470)
T ss_dssp             HHTSSSSBCEEECT-TSSEEEEEEEECT
T ss_pred             eeecCCccccEECC-CCCccceeEecCC
Confidence              122345688999 9999999876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.20  E-value=1.7e-10  Score=115.42  Aligned_cols=243  Identities=8%  Similarity=-0.128  Sum_probs=144.9

Q ss_pred             cccCcEEEEEEcCCCCEE--E-EEeCCCc--EEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          179 AHKGCIWTLKFSPDGRYL--A-SGGEDGV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~L--a-tgs~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      ++.+....++..++++..  + ++..+|.  |.+||..++                                        
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~----------------------------------------   56 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG----------------------------------------   56 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT----------------------------------------
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCC----------------------------------------
Confidence            466677777788898843  2 2344555  555576663                                        


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEE----------eCCCcEEEeccCCCeeeEeec-C-------CCCeEEE
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSC----------SMDKTVRMWQVGCNQCLNVFD-H-------HNYVTCV  314 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~----------s~d~~v~iwd~~~~~~~~~~~-~-------~~~v~~~  314 (626)
                           +.+..+.++...  .++|+|+| .|+++          +.|++|.+||..+++.+..+. +       ......+
T Consensus        57 -----~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~  129 (368)
T d1mdah_          57 -----VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII  129 (368)
T ss_dssp             -----EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSE
T ss_pred             -----cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccce
Confidence                 234445545443  58899998 55543          347889999999999887763 1       1223468


Q ss_pred             EEeeCCCCEEEEEe-CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc
Q 006909          315 QFNPIDDNYFISGS-IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  393 (626)
Q Consensus       315 ~~~p~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~  393 (626)
                      +|+| ++++++++. .++.+.+||+.+++............  .+......++..+.||.+.++++........... ..
T Consensus       130 a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~-~~  205 (368)
T d1mdah_         130 GNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG-AQ  205 (368)
T ss_dssp             EECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECC-CC
T ss_pred             EECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeee-cc
Confidence            9999 999888776 56899999999998876544333221  1112344666677888888888765543322111 11


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee--cC----------CCCCeEEEEEcCCCCEEEEEe
Q 006909          394 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG--LP----------KSGSQMSASFTTTGKHIISIG  461 (626)
Q Consensus       394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--~~----------~~~~v~~~~~sp~g~~l~s~s  461 (626)
                      ....+...+....+.+++ ..+.  ...+.+.+++..........  ..          .......++++|++..++...
T Consensus       206 ~~~~~~~~~~~~~~~~~g-~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~  282 (368)
T d1mdah_         206 CTGAQNCSSQAAQANYPG-MLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             SCTTSCBCSCCEEETTTT-EEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             cccccccceeecccccCc-EEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence            112223344566777775 3333  33455555554321111110  00          011233577899998876653


Q ss_pred             CC---------ccEEEEECCCCC
Q 006909          462 DD---------CRVYVWNYDELC  475 (626)
Q Consensus       462 ~d---------g~I~iwd~~~~~  475 (626)
                      .+         ..|.+||..++.
T Consensus       283 ~~~~~~~~~~~~~v~v~D~~t~~  305 (368)
T d1mdah_         283 VEHSRSCLAAAENTSSVTASVGQ  305 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCC
T ss_pred             cCCCceeecCCceEEEEECCCCc
Confidence            22         369999998874

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.15  E-value=9.8e-13  Score=132.17  Aligned_cols=285  Identities=13%  Similarity=0.072  Sum_probs=171.9

Q ss_pred             cccCcEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909          179 AHKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  257 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (626)
                      .|.-......++|||++|+... .+.+|.++|+.+++.                                          
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~------------------------------------------  106 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT------------------------------------------  106 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE------------------------------------------
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcE------------------------------------------
Confidence            4555667777889999886654 678999999988533                                          


Q ss_pred             CCCceeec-cCccceEEEEEcCCC---eEEEEeCCC-----------------cEEEeccCCCeeeEeecCCCCeEEEEE
Q 006909          258 ESPLQELH-GHKGDVLDLAWSNSN---YLLSCSMDK-----------------TVRMWQVGCNQCLNVFDHHNYVTCVQF  316 (626)
Q Consensus       258 ~~~~~~~~-~h~~~V~~l~~s~~~---~l~s~s~d~-----------------~v~iwd~~~~~~~~~~~~~~~v~~~~~  316 (626)
                         ...+. .+...+..++|+|++   +++..+.+.                 .+..+|..+.+....+........+.+
T Consensus       107 ---~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~  183 (441)
T d1qnia2         107 ---DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDA  183 (441)
T ss_dssp             ---EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEE
T ss_pred             ---eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEE
Confidence               22221 345678899999876   333333321                 234577787777777765667889999


Q ss_pred             eeCCCCEEEEEeCCC-cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc
Q 006909          317 NPIDDNYFISGSIDG-KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  395 (626)
Q Consensus       317 ~p~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  395 (626)
                      +| +++++++++.+. .+..++..+...............+.+.|+|+++.++ .++.+.+++....... ..+...   
T Consensus       184 sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~-~~IPvg---  257 (441)
T d1qnia2         184 DY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFT-RYIPVP---  257 (441)
T ss_dssp             CS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSE-EEECCB---
T ss_pred             CC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC-CCCcEEEEcccCCceE-EEEeCC---
Confidence            99 999988887653 3333343333222211111112234467889877664 4667777766554432 222221   


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeee----------eecC-CCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF----------KGLP-KSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~----------~~~~-~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                          .....+.++|||...++++..+++|.|||+.+....+          .... ..-.....+|+++|..+.+...|.
T Consensus       258 ----ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds  333 (441)
T d1qnia2         258 ----KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDS  333 (441)
T ss_dssp             ----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred             ----CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccc
Confidence                3466799999996566778889999999976433221          1111 112345568999999899999999


Q ss_pred             cEEEEECCCCCCCCCC-ccCCccc--eeeeccCCcE---EEEecCCCCcccccccCCCccc
Q 006909          465 RVYVWNYDELCFPSSK-QKNSVRS--CEHFFSEGVS---VAVQWPGIGTEQKSLCSSSLRD  519 (626)
Q Consensus       465 ~I~iwd~~~~~~~~~~-~~~~~~~--~~~~~~~g~~---~av~~s~~~~~l~~~~~~~~~~  519 (626)
                      .|..|++......... ....+..  ..++.+ |..   ...+++|||.+|++++.-+.++
T Consensus       334 ~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~-GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         334 QVCKWNIADAIKHYNGDRVNYIRQKLDVQYQP-GHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             eEEEeccchhhhhhccCCCceeEeccccccCC-CCCccccccccCCCCcEEEecCcccccc
Confidence            9999998532100000 0011111  111112 111   2244678888888876655544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=2.2e-08  Score=94.41  Aligned_cols=193  Identities=11%  Similarity=0.054  Sum_probs=133.6

Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe-cc
Q 006909          271 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-AD  348 (626)
Q Consensus       271 V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~  348 (626)
                      ...+++.+++ .+++....+.+++++-.+...+..........++++.+ +++++++-..+..+..++......... ..
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccc-cceeEeeccccccccccccccceeeeeeec
Confidence            4678888888 44555555666677666665554444556788999999 888888777777788888766543332 22


Q ss_pred             CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909          349 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  428 (626)
Q Consensus       349 ~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd  428 (626)
                      .......++++|+|+.+++...++.|..++..+......  ..     ........+++.++| .++++....+.|..++
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~--~~-----~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--PF-----TDITAPWGIAVDEAG-TVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--CC-----SSCCSEEEEEECTTC-CEEEEETTTTEEEEEC
T ss_pred             ccCCcceeeecCCCCEeeeccccccccccccccceeeee--ec-----cccCCCccceeeeee-eeeeeecCCCEEEEEe
Confidence            234567899999999888888888999998876543221  11     112567899999997 6777777788899888


Q ss_pred             CCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909          429 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  472 (626)
Q Consensus       429 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~  472 (626)
                      .............-.....++++++|+++++-..+++|+..+..
T Consensus       210 ~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         210 AGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            65443333332234567899999999988876767777766543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.07  E-value=4.4e-08  Score=94.51  Aligned_cols=226  Identities=12%  Similarity=0.084  Sum_probs=151.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      .+..++++|||+++++...+++|..|+...                                               ...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-----------------------------------------------~~~   61 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-----------------------------------------------NQQ   61 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-----------------------------------------------CEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-----------------------------------------------CEE
Confidence            477899999999999999899887777543                                               123


Q ss_pred             eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC--eeeEe--ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNV--FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~--~~~~~--~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      .+......+.+++|.++| ++++...++.+..|+....  .....  .......+.+++.+ +++++++.+.++.+..+|
T Consensus        62 ~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~  140 (302)
T d2p4oa1          62 IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLID  140 (302)
T ss_dssp             EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-CCCEEeeccccccceeee
Confidence            344456778999999998 5666667778888776432  22222  23556789999999 899888888889999999


Q ss_pred             CCCCeEEEec-----------cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909          338 VCEKRVVDWA-----------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  406 (626)
Q Consensus       338 ~~~~~~~~~~-----------~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~  406 (626)
                      ...+......           ........+.+.. +..+++.+..+.|..++...............     .....+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~pdgia  214 (302)
T d2p4oa1         141 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-----QTNIDDFA  214 (302)
T ss_dssp             TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-----SCCCSSEE
T ss_pred             ccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccC-----CCCCcceE
Confidence            8876543211           1112345555543 33455566778888888876543322111111     24567899


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCCcceeee-eecCCCCCeEEEEE---cCCCCEEEEEeCC
Q 006909          407 FSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASF---TTTGKHIISIGDD  463 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~---sp~g~~l~s~s~d  463 (626)
                      +.++| .++++...++.|..++.......+ .........++++|   ++|++.|+.++..
T Consensus       215 ~d~dG-~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         215 FDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ECCCC-CEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            99998 677777889999999866433333 22324456889999   6788888766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.3e-07  Score=89.06  Aligned_cols=203  Identities=14%  Similarity=0.188  Sum_probs=129.1

Q ss_pred             ceeeccCccceEEEEEcCCC-eEEEEeCCC---cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC-Cc--E
Q 006909          261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-GK--V  333 (626)
Q Consensus       261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-g~--v  333 (626)
                      ...+..+...+...+||||| .|+......   .+.+.+..++.......+........|+| ++..++..... +.  +
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~~  109 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNL  109 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEE
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecC-CCCeeeEeeecCCccce
Confidence            44455566778899999998 666554332   46666777777766667888889999999 88888776543 22  3


Q ss_pred             EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCc--EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGT--CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      ..+.....................+++++..++..+ .+|.  |..+++.....  .....      .........|+|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~--~~~~~------~~~~~~~~~~spd  181 (269)
T d2hqsa1         110 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--QRITW------EGSQNQDADVSSD  181 (269)
T ss_dssp             EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC--EECCC------SSSEEEEEEECTT
T ss_pred             eecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc--eeeec------ccccccccccccc
Confidence            344444455555555556666667778777655544 4554  44455544332  11111      1256677899999


Q ss_pred             CCcEEEEEeCCCcEEEE--eCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC---CccEEEEECCCC
Q 006909          411 ESQRIMITSEDSKLRIL--DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYVWNYDEL  474 (626)
Q Consensus       411 ~~~~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~---dg~I~iwd~~~~  474 (626)
                      +..++.+....+...+|  +........  ...........|||||++|+..+.   ...|+++++++.
T Consensus       182 g~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         182 GKFMVMVSSNGGQQHIAKQDLATGGVQV--LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             SSEEEEEEECSSCEEEEEEETTTCCEEE--CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             cceeEEEeecCCceeeeEeecccccceE--eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            85555555555555555  444333322  224556778899999999986553   357899999875

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.00  E-value=2.5e-07  Score=89.48  Aligned_cols=200  Identities=11%  Similarity=0.083  Sum_probs=127.3

Q ss_pred             ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-C----CCCeEEEEEeeCCCCEEEEEeC--------------
Q 006909          270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-H----HNYVTCVQFNPIDDNYFISGSI--------------  329 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~----~~~v~~~~~~p~~~~~l~s~s~--------------  329 (626)
                      .-..++|.+++ .++++...+.|...+...+....... .    -...+.+++.+ ++++.++-..              
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceecc
Confidence            45789999987 77777777778888887554322211 1    12357889999 8888877432              


Q ss_pred             -CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC----EE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909          330 -DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK----GF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  403 (626)
Q Consensus       330 -dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~----~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~  403 (626)
                       .|.|..++.. ++.......-...+.++|+|+++    .| ++-+..+.|..|++...........+............
T Consensus       151 ~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         151 KFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             SCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence             2345555543 33333333334457899999875    34 44567788999987654332221111111111123467


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEE-EEEeCCccEEEEECCCC
Q 006909          404 GIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l-~s~s~dg~I~iwd~~~~  474 (626)
                      .+++.++| +++++....+.|.+||....  ...+..  ....+++++|.|+++.| ++.+.++.|+..++...
T Consensus       230 GiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         230 GMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             eeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            89999998 67777778899999996533  233332  34678899999999754 56667788988887653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.99  E-value=3.1e-07  Score=87.28  Aligned_cols=242  Identities=10%  Similarity=0.149  Sum_probs=159.4

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      .-..|+++|+|+++++-..+..|++||... .... .+...                                  .    
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~-~~~~~----------------------------------~----   63 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKF-QFGEC----------------------------------G----   63 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEE-EECCB----------------------------------S----
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEE-Eeccc----------------------------------C----
Confidence            367899999999888877788899998653 2111 00000                                  0    


Q ss_pred             eeccCccceEEEEEcCC-C-eEE-EEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909          263 ELHGHKGDVLDLAWSNS-N-YLL-SCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  337 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~-~-~l~-s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd  337 (626)
                      .-.+.......+++.++ + .++ ..+.++.|.+++.. +.....+.  .......+++.+ +++++++....+.+.+++
T Consensus        64 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~  141 (279)
T d1q7fa_          64 KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFD  141 (279)
T ss_dssp             SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEEC
T ss_pred             CCcccccccccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEec
Confidence            00011123344555443 3 333 33445577777764 55666664  455678999998 888888877778899998


Q ss_pred             CCCCeEEEe--ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          338 VCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       338 ~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      .....+..+  ..+......+++.++++.+++....+.|++||..+...  ..+..    ........+|++.++| +++
T Consensus       142 ~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~--~~~g~----~g~~~~P~giavD~~G-~i~  214 (279)
T d1q7fa_         142 QNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGG----EGITNYPIGVGINSNG-EIL  214 (279)
T ss_dssp             TTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESC----TTTSCSEEEEEECTTC-CEE
T ss_pred             cCCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCcee--eeecc----cccccCCcccccccCC-eEE
Confidence            765544332  33456678899999999888888889999999876432  12211    1223567899999998 566


Q ss_pred             EEEeC-CCcEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          416 MITSE-DSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       416 ~~~s~-dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ++-.. +..|.+++.. +....+...........+++.|+|.+++ ++.++.|++|.+...
T Consensus       215 Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         215 IADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             EEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            55443 4579999854 3344454443445688999999997655 557899999999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=1.6e-07  Score=88.33  Aligned_cols=197  Identities=8%  Similarity=0.026  Sum_probs=132.2

Q ss_pred             cceEEEEEcCCCe-EEE-EeCCCcEEEeccCCCeeeE-eecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909          269 GDVLDLAWSNSNY-LLS-CSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  345 (626)
Q Consensus       269 ~~V~~l~~s~~~~-l~s-~s~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~  345 (626)
                      ..-.++++.++|. +++ .+..+.+..++........ .+........+++++ +++++++....+.+++++..+.....
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeee
Confidence            4457999999883 333 3455667777665443222 222334567889998 88888887777777777666665554


Q ss_pred             eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 006909          346 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  425 (626)
Q Consensus       346 ~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~  425 (626)
                      ..........+++.++++++++-..+..+..++..+......  ....     .....++++.++| .++++...++.|.
T Consensus        93 ~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~-----~~~p~~i~~~~~g-~~~v~~~~~~~i~  164 (260)
T d1rwia_          93 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTG-----LNDPDGVAVDNSG-NVYVTDTDNNRVV  164 (260)
T ss_dssp             CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC--CCCS-----CCSCCEEEECTTC-CEEEEEGGGTEEE
T ss_pred             eeeeeeecccccccccceeEeeccccccccccccccceeeee--eecc-----cCCcceeeecCCC-CEeeecccccccc
Confidence            444456788999999998887776667777777655433221  1111     2456789999987 6777778888999


Q ss_pred             EEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          426 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       426 iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      .++...................++++++|+++++....+.|..++....
T Consensus       165 ~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         165 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             ccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            9997643333332234566789999999999888888888998887654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.89  E-value=2.3e-06  Score=82.70  Aligned_cols=233  Identities=10%  Similarity=0.079  Sum_probs=147.1

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909          183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  262 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (626)
                      .+-.++|.++|++.++-...+.|..|+..+..                                             ...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~---------------------------------------------~~~   75 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKE---------------------------------------------IKR   75 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCC---------------------------------------------EEE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCe---------------------------------------------EEE
Confidence            45689999999977777778888888776521                                             112


Q ss_pred             eeccCccceEEEEEcCCCeEEEEeC-----CCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEEEeC-----
Q 006909          263 ELHGHKGDVLDLAWSNSNYLLSCSM-----DKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSI-----  329 (626)
Q Consensus       263 ~~~~h~~~V~~l~~s~~~~l~s~s~-----d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~s~-----  329 (626)
                      .+.........++++++|.|+.+..     .+.+...+..+........   .....+.+++.+ +|++.++...     
T Consensus        76 ~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~  154 (319)
T d2dg1a1          76 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTN  154 (319)
T ss_dssp             EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTB
T ss_pred             EEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeeccccccccc
Confidence            2223445678999999985554432     2335555555555444443   233578899999 8987776432     


Q ss_pred             -CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCceeeeEEeec-cccccCCCCeEEEE
Q 006909          330 -DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFH-DRKKTSGNKITGIQ  406 (626)
Q Consensus       330 -dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~i~~l~  406 (626)
                       .+.+..++...+.+......-...+.++|+|+++.|+++ +..+.|..|++............. ............++
T Consensus       155 ~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~  234 (319)
T d2dg1a1         155 PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC  234 (319)
T ss_dssp             CCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred             CcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeee
Confidence             134666666655554444444556789999999877555 567899999986543222211100 00111113467899


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEeCC-cceeeeeec----CCCCCeEEEEEcCCCCEEEEEeC
Q 006909          407 FSRDESQRIMITSEDSKLRILDGV-DVIHKFKGL----PKSGSQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       407 ~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~sp~g~~l~s~s~  462 (626)
                      +.++| +++++....+.|.++|.. +.+..+...    .+...+++++|.+++..+++.+.
T Consensus       235 vD~~G-~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         235 IDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EcCCC-CEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            99998 688888889999999954 333334332    23345789999998877766553

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.88  E-value=1.1e-06  Score=86.87  Aligned_cols=166  Identities=10%  Similarity=0.062  Sum_probs=105.0

Q ss_pred             CCCCeEEEEEeeCCCCEEEEEeC-CCcEEEEeCCC-CeEE-----EeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEE
Q 006909          307 HHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCE-KRVV-----DWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYK  378 (626)
Q Consensus       307 ~~~~v~~~~~~p~~~~~l~s~s~-dg~v~iwd~~~-~~~~-----~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d  378 (626)
                      ....+.++.|+| +++++++++. ...|.+|+... +.+.     ...........+.|+|+++++++.. .+++|.+|+
T Consensus       143 ~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         143 ENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             TTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence            344578999999 9998888764 34788887543 3222     1223456788999999999886655 578999999


Q ss_pred             cCCCceeee----EEeecc--------ccccCCCCeEEEEEcCCCCcEEEEEeC-C-----CcEEEEeCCcc---e---e
Q 006909          379 ASGNDLKLE----KVDFHD--------RKKTSGNKITGIQFSRDESQRIMITSE-D-----SKLRILDGVDV---I---H  434 (626)
Q Consensus       379 ~~~~~~~~~----~~~~~~--------~~~~~~~~i~~l~~s~~~~~~l~~~s~-d-----g~i~iwd~~~~---~---~  434 (626)
                      +........    ......        ...........+.++|+| ++|+++.. +     ..|..|+....   .   .
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~  300 (365)
T d1jofa_         222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence            976553221    111100        001112245678999998 56655532 2     23777775421   1   1


Q ss_pred             eeeecCCCCCeEEEEEcC-CCCEEEEEe-CCccEEEEECCCC
Q 006909          435 KFKGLPKSGSQMSASFTT-TGKHIISIG-DDCRVYVWNYDEL  474 (626)
Q Consensus       435 ~~~~~~~~~~v~~~~~sp-~g~~l~s~s-~dg~I~iwd~~~~  474 (626)
                      .............++++| +|++|+++. .++.|.+|+++..
T Consensus       301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            111122345667899998 899887775 5689999998754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.85  E-value=2.3e-07  Score=89.29  Aligned_cols=201  Identities=8%  Similarity=-0.054  Sum_probs=138.8

Q ss_pred             ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC--CeEEE-
Q 006909          270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--KRVVD-  345 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~--~~~~~-  345 (626)
                      .+..++++|+| ++++...+++|..|+.. +...........+.+++|.| +++++++...++.+..++...  +.... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeec
Confidence            57889999998 66677778989888866 44444456778899999999 999999988888888887643  23222 


Q ss_pred             -eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc---cccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          346 -WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       346 -~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                       ..........+.+.++|+++++.+.++.+..++..+.............   ..........+.+..+  .++++.+..
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~--~l~~~~~~~  184 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--FLYVSNTEK  184 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT--EEEEEETTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC--ceeeecCCC
Confidence             2334456889999999998888888889988888776543322111111   1111234566766654  577788888


Q ss_pred             CcEEEEeCCccee--eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          422 SKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       422 g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +.|..++......  .............++|+++|++.++...++.|..++....
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            9999888542211  1111112334567999999998888888899999987653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.8e-06  Score=80.94  Aligned_cols=220  Identities=14%  Similarity=0.086  Sum_probs=133.4

Q ss_pred             ccccccCcEEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909          176 EIQAHKGCIWTLKFSPDGRYLASGGEDG---VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  252 (626)
Q Consensus       176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (626)
                      .+..+...+..-+|||||+.||-.....   .+.+.+...                                        
T Consensus        33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~----------------------------------------   72 (269)
T d2hqsa1          33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN----------------------------------------   72 (269)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT----------------------------------------
T ss_pred             EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeeccc----------------------------------------
Confidence            3445677888999999999999765432   244444433                                        


Q ss_pred             cccccCCCceeeccCccceEEEEEcCCC-eEEE-EeCCCcEEE--eccCCCeeeEeecCCCCeEEEEEeeCCCCEE-EEE
Q 006909          253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLS-CSMDKTVRM--WQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISG  327 (626)
Q Consensus       253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s-~s~d~~v~i--wd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~  327 (626)
                            .....+..+........|+|++ .++. ...++...+  +.....................+++ ++..+ ++.
T Consensus        73 ------~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  145 (269)
T d2hqsa1          73 ------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTS  145 (269)
T ss_dssp             ------CCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ------CceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeecccccccccccc-ccccceecc
Confidence                  2234555677888899999998 4443 333333333  3333333334444555555666777 55544 444


Q ss_pred             eCCC--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC-cEE--EEEcCCCceeeeEEeeccccccCCCCe
Q 006909          328 SIDG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-TCH--FYKASGNDLKLEKVDFHDRKKTSGNKI  402 (626)
Q Consensus       328 s~dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg-~i~--i~d~~~~~~~~~~~~~~~~~~~~~~~i  402 (626)
                      ..++  .|.+.++..+................|+|+++.++..+.++ ...  +++......  ... .      .....
T Consensus       146 ~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~-~------~~~~~  216 (269)
T d2hqsa1         146 DQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVL-S------STFLD  216 (269)
T ss_dssp             CTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EEC-C------CSSSC
T ss_pred             cccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEe-e------cCccc
Confidence            4444  46666777777666677777788899999999988876654 444  444443332  111 1      12456


Q ss_pred             EEEEEcCCCCcEEEEEeCC--CcEEEEeCCcceeeeeecCCCCCeEEEEEcC
Q 006909          403 TGIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGLPKSGSQMSASFTT  452 (626)
Q Consensus       403 ~~l~~s~~~~~~l~~~s~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  452 (626)
                      ....|+|||..+++++...  ..|.++++..... .......+.+...+|||
T Consensus       217 ~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         217 ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             cceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            7889999995444444333  4678888764332 22222456677888988

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.81  E-value=8.9e-08  Score=94.98  Aligned_cols=285  Identities=8%  Similarity=-0.036  Sum_probs=147.3

Q ss_pred             EEEEeC--CCcEEEe--ccCCCeee--Ee--ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEEe--ccCC
Q 006909          282 LLSCSM--DKTVRMW--QVGCNQCL--NV--FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDW--ADVR  350 (626)
Q Consensus       282 l~s~s~--d~~v~iw--d~~~~~~~--~~--~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~~--~~~~  350 (626)
                      |+.|+.  .+.|.++  |.+++...  ..  ......+..|+|+| ++++|+++.. +.+..|.+.. +.....  ....
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence            555543  3445444  44444432  22  22455667899999 9999888764 5677776643 223221  2233


Q ss_pred             CCeEEEEEeeCCCEEEEEe---cCCcEEEEEcCCCceeeeEEe----------eccccccCCCCeEEEEEcCCCCcEEEE
Q 006909          351 DVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVD----------FHDRKKTSGNKITGIQFSRDESQRIMI  417 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l~~g~---~dg~i~i~d~~~~~~~~~~~~----------~~~~~~~~~~~i~~l~~s~~~~~~l~~  417 (626)
                      .....+.++++++.+.+..   ..+.+..+.+...........          ...........+.++.|+|+| +++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG-~~l~v  161 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYS  161 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCC-CEEEE
Confidence            4456677888887544332   245555554432211111000          000011123457899999998 45555


Q ss_pred             E-eCCCcEEEEeCCc-c----eeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCCCCCCCccC-------
Q 006909          418 T-SEDSKLRILDGVD-V----IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKN-------  483 (626)
Q Consensus       418 ~-s~dg~i~iwd~~~-~----~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~-------  483 (626)
                      + .....|.+|+... .    ...............++|+|+++++++.. .+++|.+|+++...........       
T Consensus       162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~  241 (365)
T d1jofa_         162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccc
Confidence            5 4456888887432 1    12222233456789999999999986665 5789999999765221100000       


Q ss_pred             --CccceeeeccCCcEEEEecCCCCcccccccCCC---ccccCccccccC--------CCCcccCCCcccCCccccC-CC
Q 006909          484 --SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS---LRDCSQKWDNLE--------TAPWIRDSERFSLGSWFSN-DG  549 (626)
Q Consensus       484 --~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~---~~~~~~~w~~~~--------~~~~~~~~~~~~~~~~~s~-dg  549 (626)
                        .......+......-.+.++|+|..++......   ....+..+....        ........+....+++|+| +|
T Consensus       242 ~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G  321 (365)
T d1jofa_         242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             cccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence              000000011111122344555555554332110   000011111100        0011122344567789998 89


Q ss_pred             CcccccCCCCCCCCCCCccc
Q 006909          550 PCRGSATWPAEKLPLWDVTI  569 (626)
Q Consensus       550 ~~l~s~~~~d~~i~vwd~~~  569 (626)
                      ++++.+...++.|.+|++..
T Consensus       322 ~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         322 EWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEET
T ss_pred             CEEEEEeCCCCeEEEEEEeC
Confidence            98888777678999997654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.5e-07  Score=92.70  Aligned_cols=272  Identities=11%  Similarity=0.056  Sum_probs=142.0

Q ss_pred             ceEEEEEcCCC-eEEEE---------eCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909          270 DVLDLAWSNSN-YLLSC---------SMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  336 (626)
Q Consensus       270 ~V~~l~~s~~~-~l~s~---------s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw  336 (626)
                      .+....||||+ +++..         +..+.+.++|+.++.......   ....+....|+| +|+.+|... ++.|.+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEE
Confidence            45667889998 55443         345678899999887654432   234566689999 999988876 5778888


Q ss_pred             eCCCCeEEEecc--CCC-----------------CeEEEEEeeCCCEEEEEecC-CcEE---------------------
Q 006909          337 GVCEKRVVDWAD--VRD-----------------VISAICYIPDGKGFIVGSIT-GTCH---------------------  375 (626)
Q Consensus       337 d~~~~~~~~~~~--~~~-----------------~i~~i~~sp~g~~l~~g~~d-g~i~---------------------  375 (626)
                      +..++....+..  ...                 .-.++-|||||++||....| ..+.                     
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            887766544322  111                 12578899999999987533 2233                     


Q ss_pred             ------------EEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE-EeCC---CcEEEEeCCccee--eee
Q 006909          376 ------------FYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI-TSED---SKLRILDGVDVIH--KFK  437 (626)
Q Consensus       376 ------------i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~-~s~d---g~i~iwd~~~~~~--~~~  437 (626)
                                  ++|+.++........ .........-+..+.|+|++ .+++. ...+   ..|.++|..+...  .+.
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~y~~~~~W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMP-PDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCC-CCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEec-cCcCccccceeeeeEEcCCC-eEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence                        333332221111000 00001112236778999997 44443 3333   2567778664322  222


Q ss_pred             ecCCCCCe----EEEEEcCCCCEEEE--Ee-CC--ccEEEEECCCC-------C-CCCCCccCCccceeeeccCCcEE-E
Q 006909          438 GLPKSGSQ----MSASFTTTGKHIIS--IG-DD--CRVYVWNYDEL-------C-FPSSKQKNSVRSCEHFFSEGVSV-A  499 (626)
Q Consensus       438 ~~~~~~~v----~~~~~sp~g~~l~s--~s-~d--g~I~iwd~~~~-------~-~~~~~~~~~~~~~~~~~~~g~~~-a  499 (626)
                      .. ..+.|    ....|+|+|+.++.  .+ .+  +.++...+...       . .......-.+....++..++..+ -
T Consensus       298 e~-~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF  376 (465)
T d1xfda1         298 DE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF  376 (465)
T ss_dssp             EE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred             Ec-CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEE
Confidence            11 22222    34578999985432  22 23  34444443211       1 11111122233445566554433 2


Q ss_pred             Eec--CCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCccc
Q 006909          500 VQW--PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG  553 (626)
Q Consensus       500 v~~--s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  553 (626)
                      ++.  +|....|+.+..++....    ..+.   ......+...++.|||||++++
T Consensus       377 ~a~~~~p~~~hly~v~l~g~~~~----~~lt---~~~~~~~~~~~~~~S~~~~y~v  425 (465)
T d1xfda1         377 LSTEDLPRRRQLYSANTVGNFNR----QCLS---CDLVENCTYFSASFSHSMDFFL  425 (465)
T ss_dssp             EESSSCTTCCEEEEECSSTTCCC----BCSS---TTSSSSCCCCEEEECTTSSEEE
T ss_pred             EEeCCCCCceEEEEEECCCCCcc----eeec---cccCCCCCEEEEEECCCCCEEE
Confidence            332  345556665543322110    0011   0112233467889999999776

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.61  E-value=2e-05  Score=75.67  Aligned_cols=196  Identities=9%  Similarity=0.028  Sum_probs=123.5

Q ss_pred             cceEEEEEcCCCeEEEEeC--------CCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909          269 GDVLDLAWSNSNYLLSCSM--------DKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRI  335 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~--------d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~dg~v~i  335 (626)
                      ...-.++|.++|.|+.++.        +++|..||..++.......     .......++|.+ +++.++++...+.|..
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEE
Confidence            3456788999985544332        3578889988876544332     123467899999 8888888887778889


Q ss_pred             EeCCCCeEEEeccCC-----CCeEEEEEeeCCCEEEEEec---------------CCcEEEEEcCCCceeeeEEeecccc
Q 006909          336 WGVCEKRVVDWADVR-----DVISAICYIPDGKGFIVGSI---------------TGTCHFYKASGNDLKLEKVDFHDRK  395 (626)
Q Consensus       336 wd~~~~~~~~~~~~~-----~~i~~i~~sp~g~~l~~g~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~  395 (626)
                      ++..++.........     ...+.+.+.++|+..++-..               .|.|..++......  .... .   
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~--~~~~-~---  170 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI--QVDT-A---  170 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE--EEEE-E---
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCcee--EeeC-C---
Confidence            998776544322211     13577999999987766422               23344444332211  1111 1   


Q ss_pred             ccCCCCeEEEEEcCCCC----cEEEEEeCCCcEEEEeCCcc-----eeeeeec--CCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909          396 KTSGNKITGIQFSRDES----QRIMITSEDSKLRILDGVDV-----IHKFKGL--PKSGSQMSASFTTTGKHIISIGDDC  464 (626)
Q Consensus       396 ~~~~~~i~~l~~s~~~~----~~l~~~s~dg~i~iwd~~~~-----~~~~~~~--~~~~~v~~~~~sp~g~~l~s~s~dg  464 (626)
                         ......++|+|++.    .++++-+..+.|..||+...     ...+...  ......-.+++.++|++.++....+
T Consensus       171 ---~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         171 ---FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             ---ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             ---cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence               13457899998753    24555577889999885421     1112111  1223456899999999888887889


Q ss_pred             cEEEEECCCC
Q 006909          465 RVYVWNYDEL  474 (626)
Q Consensus       465 ~I~iwd~~~~  474 (626)
                      .|++||.+++
T Consensus       248 ~I~~~dp~~g  257 (314)
T d1pjxa_         248 HIEVFGPDGG  257 (314)
T ss_dssp             EEEEECTTCB
T ss_pred             EEEEEeCCCC
Confidence            9999998765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.52  E-value=8.7e-05  Score=71.20  Aligned_cols=200  Identities=12%  Similarity=0.100  Sum_probs=129.6

Q ss_pred             ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeC----CCcEEEEeC
Q 006909          265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI----DGKVRIWGV  338 (626)
Q Consensus       265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~----dg~v~iwd~  338 (626)
                      ......+..++|.++| ++++-...+.|..|+..++.....+ ........+++.+ +++++++...    .+.+...+.
T Consensus        36 ~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          36 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECT
T ss_pred             ccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcC
Confidence            3344456789999888 4555567888999998877665554 4556789999999 9988776543    234666666


Q ss_pred             CCCeEEEecc---CCCCeEEEEEeeCCCEEEEEec------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909          339 CEKRVVDWAD---VRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  409 (626)
Q Consensus       339 ~~~~~~~~~~---~~~~i~~i~~sp~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  409 (626)
                      .++.+.....   .....+.+.+.++|++.++...      .+.+..++.......  .+...      ......++|+|
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~--~~~~~------~~~pnGia~s~  186 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQN------ISVANGIALST  186 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEE------ESSEEEEEECT
T ss_pred             CCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE--EEeec------cceeeeeeecc
Confidence            6655444332   2345778999999986555322      123444444433221  11111      13567899999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCcc---ee-----eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          410 DESQRIMITSEDSKLRILDGVDV---IH-----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       410 ~~~~~l~~~s~dg~i~iwd~~~~---~~-----~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      ++..++++-+..+.|..|++...   ..     .............+++.++|++.++....+.|.+||-+.
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence            98555667677899999985421   11     111112223467899999999888888899999999654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.48  E-value=5.4e-05  Score=71.76  Aligned_cols=187  Identities=12%  Similarity=0.054  Sum_probs=123.8

Q ss_pred             ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeCC----CcEEEEeC
Q 006909          268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSID----GKVRIWGV  338 (626)
Q Consensus       268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~d----g~v~iwd~  338 (626)
                      ...+.++++.+++.|+.++.+ .|.++|..+++......     ....++.+.+.| +|++.++....    +.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeee
Confidence            456788999888866666665 48899999887654432     223578899999 88877765432    34566766


Q ss_pred             CCCeEEEeccCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCceee--eEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          339 CEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       339 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      ..++.......-...+.++|+++++.++.. +..+.|..|++.......  ....+. ..........++++..+| ++.
T Consensus       136 ~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~-~~~~~~g~pdG~~vD~~G-nlW  213 (295)
T d2ghsa1         136 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-DSTGIKGGMDGSVCDAEG-HIW  213 (295)
T ss_dssp             ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-ECTTSSSEEEEEEECTTS-CEE
T ss_pred             cCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEe-ccCcccccccceEEcCCC-CEE
Confidence            667766655555567889999999876654 557889999875432211  111110 011223567889999998 677


Q ss_pred             EEEeCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEc-CCCCEEEEE
Q 006909          416 MITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFT-TTGKHIISI  460 (626)
Q Consensus       416 ~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s-p~g~~l~s~  460 (626)
                      ++.-..+.|..||.. +....+..  ....+++++|- |+.+.|+..
T Consensus       214 va~~~~g~V~~~dp~G~~~~~i~l--P~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         214 NARWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEE
T ss_pred             eeeeCCCceEEecCCCcEeeEecC--CCCceEEEEEeCCCCCEEEEE
Confidence            777778899999954 34444443  23568999995 676666544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.46  E-value=6e-05  Score=70.84  Aligned_cols=197  Identities=10%  Similarity=0.166  Sum_probs=131.1

Q ss_pred             cceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecC-------CCCeEEEEEeeCCCCEEEEE-eCCCcEEEEeCC
Q 006909          269 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVC  339 (626)
Q Consensus       269 ~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~s~-s~dg~v~iwd~~  339 (626)
                      .....|++.+++ .+++-..+..|++||.+ +..+..+..       ......+++.+..+..+++. +.++.|..++..
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            346899999988 45555667889999976 666666631       12345667666234444443 344578888775


Q ss_pred             CCeEEEec-cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909          340 EKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  418 (626)
Q Consensus       340 ~~~~~~~~-~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~  418 (626)
                      ......+. ........+++.++|+.+++....+.+.+++.....  ...+..    ..+......+++.+++ ..+++.
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~--~~~~g~----~~~~~~~~~i~~d~~g-~i~v~d  174 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV--LHKFGC----SKHLEFPNGVVVNDKQ-EIFISD  174 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE--EEEEEC----TTTCSSEEEEEECSSS-EEEEEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce--eecccc----cccccccceeeeccce-eEEeee
Confidence            54444332 334567889999999988888777888888765432  222211    1234678889999987 678888


Q ss_pred             eCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCC
Q 006909          419 SEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDE  473 (626)
Q Consensus       419 s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~  473 (626)
                      ...+.|++||.. +....+...........+++.++|+.+++-+. ++.|.+|+.+.
T Consensus       175 ~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G  231 (279)
T d1q7fa_         175 NRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  231 (279)
T ss_dssp             GGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             ccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC
Confidence            888999999965 33333332334456789999999997777544 45799998654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=0.00016  Score=73.13  Aligned_cols=186  Identities=11%  Similarity=0.070  Sum_probs=105.6

Q ss_pred             cEEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          183 CIWTLKFSPDGRYLASGGE---------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       183 ~V~~l~fspdg~~Latgs~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      .+....|||||++|+.+..         .+.+.|+|+.++...                                     
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-------------------------------------  104 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-------------------------------------  104 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------------------
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee-------------------------------------
Confidence            4667889999999887643         456778888764321                                     


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCC-----------------CeEE
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHN-----------------YVTC  313 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~-----------------~v~~  313 (626)
                            ++.........+....|||+| .|+-.. ++.|.+.+..++..++...  ...                 .-.+
T Consensus       105 ------~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a  177 (465)
T d1xfda1         105 ------SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (465)
T ss_dssp             ------ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             ------eccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence                  111112233445667899998 555544 5678888887766554432  111                 1257


Q ss_pred             EEEeeCCCCEEEEEeCC-Cc---------------------------------EEEEeCCCCeEEEec-------cCCCC
Q 006909          314 VQFNPIDDNYFISGSID-GK---------------------------------VRIWGVCEKRVVDWA-------DVRDV  352 (626)
Q Consensus       314 ~~~~p~~~~~l~s~s~d-g~---------------------------------v~iwd~~~~~~~~~~-------~~~~~  352 (626)
                      +.|+| ++++||....| ..                                 +.++|+.++......       .....
T Consensus       178 ~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y  256 (465)
T d1xfda1         178 HWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (465)
T ss_dssp             EEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             EEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccce
Confidence            78999 99999986532 22                                 334444332211100       11123


Q ss_pred             eEEEEEeeCCCEEEEEec-C---CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          353 ISAICYIPDGKGFIVGSI-T---GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       353 i~~i~~sp~g~~l~~g~~-d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      +..+.|+|+++.++.... +   ..+.++|..++.............  ....-....|+++|..++
T Consensus       257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~w--v~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW--LHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC--CCCCCCCCEECTTSCSEE
T ss_pred             eeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCce--EeccCCceeEccCCCeeE
Confidence            677899999876655433 2   257888888876543221111100  001123457899986543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.23  E-value=0.00092  Score=62.88  Aligned_cols=190  Identities=13%  Similarity=0.059  Sum_probs=127.7

Q ss_pred             EEEEcC-CCeEEEE-eCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccC-
Q 006909          273 DLAWSN-SNYLLSC-SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-  349 (626)
Q Consensus       273 ~l~~s~-~~~l~s~-s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-  349 (626)
                      +..|.+ ++.|+-. -..+.|..||..+++. ..+.....+.++++.+ ++.++++ +.+ .+.++|..+++...+... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            456775 4544443 3567899999988765 4556677889999988 7766654 444 588999998887654332 


Q ss_pred             ----CCCeEEEEEeeCCCEEEEEec----CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          350 ----RDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       350 ----~~~i~~i~~sp~g~~l~~g~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                          ...++.+.+.|+|+..++...    .+.-.+|.+..+......   ..     ......++|++++..++++-+..
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~---~~-----~~~~Ng~~~s~d~~~l~~~dt~~  169 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF---AD-----ISIPNSICFSPDGTTGYFVDTKV  169 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE---EE-----ESSEEEEEECTTSCEEEEEETTT
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe---ec-----cCCcceeeecCCCceEEEeeccc
Confidence                235788999999986665432    234566666655432211   11     13567899999986667777788


Q ss_pred             CcEEEEeCCc-------ceeee-eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          422 SKLRILDGVD-------VIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       422 g~i~iwd~~~-------~~~~~-~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      +.|..++...       ....+ ......+....+++..+|++.++.-..+.|..||-+..
T Consensus       170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~  230 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN  230 (295)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC
T ss_pred             ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCc
Confidence            9999987531       11111 22223456788999999998888777889999996543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.10  E-value=6.3e-05  Score=70.24  Aligned_cols=222  Identities=12%  Similarity=0.087  Sum_probs=122.2

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec
Q 006909          188 KFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  265 (626)
Q Consensus       188 ~fspd--g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (626)
                      ..|||  |+.+|-.+ +|.|.+.|+.++.                                              .+.+.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~----------------------------------------------~~~Lt   37 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS----------------------------------------------TRKIV   37 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC----------------------------------------------EEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC----------------------------------------------EEEEe
Confidence            35788  99888765 4568888887632                                              34556


Q ss_pred             cCccceEEEEEcCCC-eEEEEe-CCC-----cEEEeccCCCeeeEeecC-------CCCeEEEEEeeCCCCEEEEEeCC-
Q 006909          266 GHKGDVLDLAWSNSN-YLLSCS-MDK-----TVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFISGSID-  330 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~-~l~s~s-~d~-----~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~s~s~d-  330 (626)
                      .+.+.+...+||||| .|+... .++     .|.+++..+++......+       ........|+| +++.++..... 
T Consensus        38 ~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~  116 (281)
T d1k32a2          38 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQ  116 (281)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTS
T ss_pred             cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC-CCCEEEEEEccC
Confidence            677788999999998 566432 222     377778887776654322       23456788999 99988875432 


Q ss_pred             -----CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEE-ecCC-----------cEEEEEcCCCceeeeEEeecc
Q 006909          331 -----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITG-----------TCHFYKASGNDLKLEKVDFHD  393 (626)
Q Consensus       331 -----g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-~~dg-----------~i~i~d~~~~~~~~~~~~~~~  393 (626)
                           ..+...+...+........  .... .+.+++..++.. ....           ..............  .    
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----  187 (281)
T d1k32a2         117 PFSSMTCLYRVENDGINFVPLNLG--PATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK--I----  187 (281)
T ss_dssp             SSTTCCEEEEEEGGGTEEEECCSC--SCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE--E----
T ss_pred             CCccceeeeeecCCCceeEEecCC--ccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceee--c----
Confidence                 2345556655555433222  2222 334444433332 2111           11111111111100  0    


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909          394 RKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  470 (626)
Q Consensus       394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~dg--~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd  470 (626)
                        ...........++++  ..+.....++  .|.++|+.... ..+..   ........|+|||+.|+... ++.|+++|
T Consensus       188 --~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~---~~~~~~~~~SpDG~~I~f~~-~~~l~~~d  259 (281)
T d1k32a2         188 --VDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTS---FTDYYPRHLNTDGRRILFSK-GGSIYIFN  259 (281)
T ss_dssp             --ECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCC---CCSSCEEEEEESSSCEEEEE-TTEEEEEC
T ss_pred             --cCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeec---CCCcccccCcCCCCEEEEEe-CCEEEEEE
Confidence              011134445556665  2444444443  56667765332 22221   12223346899999988654 68899999


Q ss_pred             CCCC
Q 006909          471 YDEL  474 (626)
Q Consensus       471 ~~~~  474 (626)
                      +.++
T Consensus       260 ~~~g  263 (281)
T d1k32a2         260 PDTE  263 (281)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            9886

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.90  E-value=4.1e-05  Score=71.57  Aligned_cols=99  Identities=16%  Similarity=0.237  Sum_probs=67.4

Q ss_pred             EEeeCC--CCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC-----cEEEEEcCCCceee
Q 006909          315 QFNPID--DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG-----TCHFYKASGNDLKL  386 (626)
Q Consensus       315 ~~~p~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg-----~i~i~d~~~~~~~~  386 (626)
                      ..+| +  |+.++..+ ++.|.+.|+.+++...+......+...+|+|||+.|+.... ++     .|.+++..++....
T Consensus         5 ~~sP-di~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNP-DIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEE-EEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCC-CCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            3578 7  88888775 46799999999999888888888999999999999986543 22     36667766665422


Q ss_pred             eEEeecc-ccccCCCCeEEEEEcCCCCcEEEEE
Q 006909          387 EKVDFHD-RKKTSGNKITGIQFSRDESQRIMIT  418 (626)
Q Consensus       387 ~~~~~~~-~~~~~~~~i~~l~~s~~~~~~l~~~  418 (626)
                        +.... .............|+|+| +.|+..
T Consensus        83 --lt~~~~~~~~~~~~~~~~~~spdg-~~l~~~  112 (281)
T d1k32a2          83 --ITYFSGKSTGRRMFTDVAGFDPDG-NLIIST  112 (281)
T ss_dssp             --CCCCCEEEETTEECSEEEEECTTC-CEEEEE
T ss_pred             --eeecCCCccCccccccccccCCCC-CEEEEE
Confidence              11110 001111345678899998 555554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.69  E-value=0.0091  Score=57.91  Aligned_cols=113  Identities=12%  Similarity=0.159  Sum_probs=68.6

Q ss_pred             eEEEEEcCCC-eEEEEeCC-CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC------CcEEEEeCCC
Q 006909          271 VLDLAWSNSN-YLLSCSMD-KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCE  340 (626)
Q Consensus       271 V~~l~~s~~~-~l~s~s~d-~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d------g~v~iwd~~~  340 (626)
                      ....++.+++ .++.|+.+ ..+.+||..+......-.  ....-.+++..+ ++++++.|+.+      ..+.+||..+
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCC
Confidence            3455677888 45555444 589999998876644322  222233556666 88998888753      3689999988


Q ss_pred             CeEEEeccCC---------------CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909          341 KRVVDWADVR---------------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  384 (626)
Q Consensus       341 ~~~~~~~~~~---------------~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~  384 (626)
                      .+-.......               ..-..+...++|+.++.+...+.+.+++......
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            7643321110               0111223345777777777777777777766554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.44  E-value=0.0067  Score=58.27  Aligned_cols=137  Identities=11%  Similarity=0.018  Sum_probs=86.8

Q ss_pred             cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC--------------------------------------
Q 006909          290 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--------------------------------------  331 (626)
Q Consensus       290 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg--------------------------------------  331 (626)
                      .+.+.|..+.+....+.-......+.++| +|+++++.+.+.                                      
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            36677888888777776556677888999 888888876431                                      


Q ss_pred             cEEEEeCCCC---eEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceee-------eEEeeccccccCCC
Q 006909          332 KVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKL-------EKVDFHDRKKTSGN  400 (626)
Q Consensus       332 ~v~iwd~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~  400 (626)
                      .+.+.|.+..   ..............+.++|||+++++++ .+.++.++|++.-....       ..+..+   ...+-
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e---~elgl  329 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE---PELGL  329 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC---CBCCS
T ss_pred             CceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee---cccCc
Confidence            1233333321   1222333344566789999999988765 47899999986322111       111110   11234


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909          401 KITGIQFSRDESQRIMITSEDSKLRILDGVD  431 (626)
Q Consensus       401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~  431 (626)
                      ....-+|...| .-..+---|.+|.-|++..
T Consensus       330 gPLht~fd~~g-~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         330 GPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             CccccccCCCc-eEEEEeeccceEEEEecch
Confidence            55667898887 5556667899999999653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.32  E-value=0.015  Score=55.79  Aligned_cols=201  Identities=13%  Similarity=0.145  Sum_probs=123.1

Q ss_pred             EEEEcC---CC-e-EEEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeC-CCCEEEEEeCCC-------------
Q 006909          273 DLAWSN---SN-Y-LLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI-DDNYFISGSIDG-------------  331 (626)
Q Consensus       273 ~l~~s~---~~-~-l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~-~~~~l~s~s~dg-------------  331 (626)
                      .+.+..   || + ++.-..+..|.+-|+.+.++.+..  .....+..++..+. +..+++.++...             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455543   56 4 445557788999999999987655  34556777666440 445677665532             


Q ss_pred             -----cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC---------------cEEEEEcCC-------Cc-
Q 006909          332 -----KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---------------TCHFYKASG-------ND-  383 (626)
Q Consensus       332 -----~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg---------------~i~i~d~~~-------~~-  383 (626)
                           .+.++|..+.++............+.++|+|+++++.+.+.               .+.+++...       ++ 
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                 36678988888776555566677899999999999877432               233444310       00 


Q ss_pred             eee---eEEeecccc-------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeee----------ee-cCCC
Q 006909          384 LKL---EKVDFHDRK-------KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF----------KG-LPKS  442 (626)
Q Consensus       384 ~~~---~~~~~~~~~-------~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~----------~~-~~~~  442 (626)
                      ...   ..+......       ..-......+.++|||...++++..+.++.|+|..+....+          .. ....
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg  328 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  328 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred             EEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence            000   000000000       00013455789999996666677779999999976322211          11 1123


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909          443 GSQMSASFTTTGKHIISIGDDCRVYVWNYDE  473 (626)
Q Consensus       443 ~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~  473 (626)
                      -....-+|+..|.-..|---|..|.-|++..
T Consensus       329 lgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cCccccccCCCceEEEEeeccceEEEEecch
Confidence            3455678888886555666899999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.11  Score=47.09  Aligned_cols=201  Identities=9%  Similarity=0.005  Sum_probs=121.8

Q ss_pred             eccCccceEEEEEcCC-CeEE-EEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909          264 LHGHKGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  340 (626)
Q Consensus       264 ~~~h~~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~  340 (626)
                      +..+...+..++|... +.|+ +-..++.|+..++.......... ....+.++++....+++..+-...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            3344556888999865 4444 44566778888887655544443 3357889999873444445555667899999887


Q ss_pred             CeEEEecc-CCCCeEEEEEeeCCCEEEEEecC-Cc--EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          341 KRVVDWAD-VRDVISAICYIPDGKGFIVGSIT-GT--CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       341 ~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      .....+.. .-..+..++++|...+++..... +.  |.-.++.+....  .+...+     -....++++.+.+..+..
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~--~i~~~~-----~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR--ILAQDN-----LGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE--EEECTT-----CSCEEEEEEETTTTEEEE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce--eeeeec-----ccccceEEEeecCcEEEE
Confidence            65443332 23668899999977776654432 23  444455544322  121111     246789999887644445


Q ss_pred             EEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCC
Q 006909          417 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL  474 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~  474 (626)
                      +-...+.|...+........... ......++++.  +.+|... ...+.|...|..++
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~v~~-~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         184 VDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             EeCCCCEEEEEECCCCCeEEEEC-CCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence            55667899999876332221111 12234577775  4555544 45678888888765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.90  E-value=0.028  Score=54.19  Aligned_cols=150  Identities=11%  Similarity=0.023  Sum_probs=87.2

Q ss_pred             eCCCCEEEEEeCCC-----------cEEEEeCCCCeEEE----eccCCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCC
Q 006909          318 PIDDNYFISGSIDG-----------KVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASG  381 (626)
Q Consensus       318 p~~~~~l~s~s~dg-----------~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~  381 (626)
                      +.+++.++.|+.+.           .+.+||..++.-..    ...+.....+.++.++|+.++.|+.+ ..+.+||..+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            33677777776421           36789998765322    22233334466788999999988765 5899999987


Q ss_pred             CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEeCCcceeeeeec--------C-C-----
Q 006909          382 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED------SKLRILDGVDVIHKFKGL--------P-K-----  441 (626)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~--------~-~-----  441 (626)
                      ...... ..+..     ...-...+..+|| ++++.++.+      ..+.+||..+..-.....        . +     
T Consensus       108 ~~w~~~-~~~~~-----~r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         108 DSWIPG-PDMQV-----ARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             TEEEEC-CCCSS-----CCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             Cccccc-ccccc-----cccccceeeecCC-ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            654321 11111     1223456677787 577776543      468999976433221100        0 0     


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909          442 SGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  474 (626)
Q Consensus       442 ~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~  474 (626)
                      ...-..+...++|+.++.++.++.+.+++..+.
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             ccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            001111233467787887777777777777664

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.85  E-value=0.16  Score=45.94  Aligned_cols=233  Identities=12%  Similarity=0.173  Sum_probs=143.5

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec
Q 006909          186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  265 (626)
Q Consensus       186 ~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (626)
                      +.-.+|..+.||--+ ..++.|+|+++.                                             +.++.+.
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK---------------------------------------------~klks~~  100 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMK---------------------------------------------SKMKAHT  100 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTT---------------------------------------------EEEEEEE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHh---------------------------------------------hhhceEE
Confidence            344678888777766 457999999872                                             2222222


Q ss_pred             cCccceEEEEEcCCCeEEEEeCCCcEEEeccCC-CeeeEeec-C----CCCeEEEEEeeCCCCEEEEEe-------CCCc
Q 006909          266 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-H----HNYVTCVQFNPIDDNYFISGS-------IDGK  332 (626)
Q Consensus       266 ~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~-~----~~~v~~~~~~p~~~~~l~s~s-------~dg~  332 (626)
                       ...+|.-=.|-.+..|+-.+. ..|.-|+++. ..+.+.|. |    ...|..-..++ +.+.++..+       ..|.
T Consensus       101 -~~e~VvfWkWis~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~  177 (327)
T d1utca2         101 -MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGA  177 (327)
T ss_dssp             -CSSCCCEEEESSSSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEE
T ss_pred             -cCCCcEEEEecCCCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECC-CCCEEEEEeEecCCCceeEE
Confidence             345777777877776665544 4699999954 34566664 2    34566667777 777665433       2367


Q ss_pred             EEEEeCCCCeEEEeccCCCCeEEEEEeeCC---CEEEEE---ecCCcEEEEEcCCCc---eee--eEEeeccccccCCCC
Q 006909          333 VRIWGVCEKRVVDWADVRDVISAICYIPDG---KGFIVG---SITGTCHFYKASGND---LKL--EKVDFHDRKKTSGNK  401 (626)
Q Consensus       333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g---~~l~~g---~~dg~i~i~d~~~~~---~~~--~~~~~~~~~~~~~~~  401 (626)
                      +.+|..+.+....+.+|......+.+.-+.   +.++.+   ...+.+++.++....   ...  ......-......+-
T Consensus       178 mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DF  257 (327)
T d1utca2         178 MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF  257 (327)
T ss_dssp             EEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCC
T ss_pred             EEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCc
Confidence            889999887766666665433333221111   122222   233688898886532   111  122222222233466


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEE
Q 006909          402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV  468 (626)
Q Consensus       402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~i  468 (626)
                      ..++..++.. ..+..-+.-|.|++||+.+....+...-....|...+-..+..-+++...+|.|.-
T Consensus       258 Pvamqvs~ky-giiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         258 PVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             EEEEEeeccC-CEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            7788888875 58999999999999999988888877656667765555555555666666776653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.17  Score=45.83  Aligned_cols=199  Identities=10%  Similarity=-0.017  Sum_probs=117.7

Q ss_pred             CccceEEEEEcCCC-eEEEE-eCCCcEEEeccCCCe----eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909          267 HKGDVLDLAWSNSN-YLLSC-SMDKTVRMWQVGCNQ----CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  339 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~s~-s~d~~v~iwd~~~~~----~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~  339 (626)
                      ....+..++|.+.+ .|+-+ ...+.|.--++....    ..... .....+.++++.+..+++..+-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            44567788998654 55544 455666666654321    11112 2334567889887455555555666789999998


Q ss_pred             CCeEEE-eccCCCCeEEEEEeeCCCEEEEEe--cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909          340 EKRVVD-WADVRDVISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  416 (626)
Q Consensus       340 ~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~  416 (626)
                      ...... ..........++++|...+|....  ..+.|.-.++.+.....  +....     .....++++.+.+..+..
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~--l~~~~-----~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTEN-----IQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECSS-----CSCEEEEEEETTTTEEEE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec--ccccc-----cceeeEEEeeccccEEEE
Confidence            766443 334456688999999665665543  23456666666543321  11111     245789999987645555


Q ss_pred             EEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCC
Q 006909          417 ITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL  474 (626)
Q Consensus       417 ~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~  474 (626)
                      +-...+.|...+...  ...............++++.  +.+|..+ ..++.|+..+..++
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCC
Confidence            556678898888652  23333333233446677765  4455544 46678888887665

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.77  E-value=0.79  Score=42.78  Aligned_cols=132  Identities=14%  Similarity=0.092  Sum_probs=75.7

Q ss_pred             eEEEEe---CCCcEEEeccCCCe--ee--Eeec--CCCCeEEEEEeeCCCCEEEEEeC---------------CCcEEEE
Q 006909          281 YLLSCS---MDKTVRMWQVGCNQ--CL--NVFD--HHNYVTCVQFNPIDDNYFISGSI---------------DGKVRIW  336 (626)
Q Consensus       281 ~l~s~s---~d~~v~iwd~~~~~--~~--~~~~--~~~~v~~~~~~p~~~~~l~s~s~---------------dg~v~iw  336 (626)
                      +|++..   ...+|.++++....  ..  ..+.  .....+.+++.. ++.+++|-..               -++..+|
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            455543   34678888874332  21  2222  234678898888 8887777311               1233444


Q ss_pred             eCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909          337 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  415 (626)
Q Consensus       337 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l  415 (626)
                      ....+........-...+.|+++|++++|+++. ..+.|+.|++.............     -...+-.+.+.+.++.+.
T Consensus       192 ~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-----l~~~pDNi~~d~~~g~lw  266 (340)
T d1v04a_         192 YYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-----FDTLVDNISVDPVTGDLW  266 (340)
T ss_dssp             EECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-----CSSEEEEEEECTTTCCEE
T ss_pred             EEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-----CCCCCCccEEecCCCEEE
Confidence            444444433334445688999999998877654 56789999997654322211111     125567788876433444


Q ss_pred             EEE
Q 006909          416 MIT  418 (626)
Q Consensus       416 ~~~  418 (626)
                      +++
T Consensus       267 va~  269 (340)
T d1v04a_         267 VGC  269 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.77  E-value=3.4e-05  Score=54.24  Aligned_cols=55  Identities=22%  Similarity=0.330  Sum_probs=42.3

Q ss_pred             hccccccceeeeeecc--ccccccccccccCCCCcc-----cccChhhHHHHHHHHHHhhcc
Q 006909           80 LEQDQMNECVVTLEGE--SNGFSQSVDKFENPFPEC-----KGVNIKKVKKLWKRIISMKKR  134 (626)
Q Consensus        80 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  134 (626)
                      |+.+|+++++++|.+|  .++..++.+.|..++.-.     .....++++|+|..++|+|++
T Consensus         2 Lt~rQ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK   63 (76)
T d1uuja_           2 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK   63 (76)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence            6789999999999998  556777777777644211     122348899999999999988

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.61  E-value=0.73  Score=41.22  Aligned_cols=220  Identities=7%  Similarity=-0.061  Sum_probs=127.6

Q ss_pred             cccccCcEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909          177 IQAHKGCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  255 (626)
Q Consensus       177 l~~H~~~V~~l~fspdg~~Latg-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (626)
                      +..+...|..|+|.+..+.|.-. ..++.|+..++.....                                        
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~----------------------------------------   70 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----------------------------------------   70 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----------------------------------------
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc----------------------------------------
Confidence            44455668889999877766654 3456677777654211                                        


Q ss_pred             ccCCCceeeccCccceEEEEEcC-CCeEE-EEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC-CC
Q 006909          256 IEESPLQELHGHKGDVLDLAWSN-SNYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI-DG  331 (626)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~s~-~~~l~-s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~-dg  331 (626)
                           ...+......+.++++.. .+.|+ +-...+.|.+.++....+...+. ....+..++++| ...+++.... .+
T Consensus        71 -----~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp-~~g~ly~t~~~~~  144 (263)
T d1npea_          71 -----TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRD  144 (263)
T ss_dssp             -----EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSS
T ss_pred             -----EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEec-ccCcEEEeecCCC
Confidence                 111222234577888874 34444 55566789999987665443333 335789999999 5555544332 22


Q ss_pred             c--EEEEeCCCCeEEEec-cCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909          332 K--VRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  407 (626)
Q Consensus       332 ~--v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  407 (626)
                      .  |.--++.+.....+. ..-.....+++.+.++.|+.. ...+.|...++.+.....  + ..+.     ....+|++
T Consensus       145 ~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~--v-~~~~-----~~P~~lav  216 (263)
T d1npea_         145 NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK--V-LEGL-----QYPFAVTS  216 (263)
T ss_dssp             SCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE--E-EECC-----CSEEEEEE
T ss_pred             CcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEE--E-ECCC-----CCcEEEEE
Confidence            3  444466554433322 233456899999888877665 456789989887654321  1 1221     23467877


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcC
Q 006909          408 SRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTT  452 (626)
Q Consensus       408 s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp  452 (626)
                      ..+  .++.+-...+.|...|.......-.. ........++.+.+
T Consensus       217 ~~~--~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         217 YGK--NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             ETT--EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             ECC--EEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            632  45555556788888887644332222 12333444555443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.44  E-value=0.86  Score=40.99  Aligned_cols=189  Identities=11%  Similarity=0.138  Sum_probs=116.2

Q ss_pred             EcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-eEEE-eccC----
Q 006909          276 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVD-WADV----  349 (626)
Q Consensus       276 ~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~-~~~~-~~~~----  349 (626)
                      .+|...+++--...++.++|+++.+.++.+....+|.--.|-  +.+.|+..+ +..|+-|++.+. .... +..|    
T Consensus        70 MhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~  146 (327)
T d1utca2          70 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA  146 (327)
T ss_dssp             ECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEES--SSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             cCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEec--CCCEEEEEc-CCceEEEcccCCCCchhhhhhccccc
Confidence            356653333333568999999999999999988899887886  567776665 467999999542 2222 2222    


Q ss_pred             CCCeEEEEEeeCCCEEEEEe-------cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc--CCCCcEEEE---
Q 006909          350 RDVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMI---  417 (626)
Q Consensus       350 ~~~i~~i~~sp~g~~l~~g~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~~~~~l~~---  417 (626)
                      ...|..-..+++.++++..+       -.|.+.+|..+....+.    +.++    ...-..+.+.  ++....++.   
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~----ieGh----aa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE----ECCS----EEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcc----ccce----eeeeEEEEcCCCCCCceEEEEEEC
Confidence            35577777788899887643       23678899887654322    1111    0111111110  110112222   


Q ss_pred             EeCCCcEEEEeCCcc---eeee-----ee----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909          418 TSEDSKLRILDGVDV---IHKF-----KG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  475 (626)
Q Consensus       418 ~s~dg~i~iwd~~~~---~~~~-----~~----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~  475 (626)
                      +...++++|.++...   ...+     ..    .....-..++..++.-..+..-+.-|.|++||++++.
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt  288 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  288 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccccc
Confidence            123368888886531   1111     11    1124556788889988899999999999999999973

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.86  Score=40.77  Aligned_cols=155  Identities=9%  Similarity=-0.030  Sum_probs=95.6

Q ss_pred             cceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe--CCCcEEEEeCCCCeE
Q 006909          269 GDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGVCEKRV  343 (626)
Q Consensus       269 ~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s--~dg~v~iwd~~~~~~  343 (626)
                      ..+.+|++.+. + ...+-...+.|.+.++.......... .......++++| ...+++...  ..+.|.-.++.....
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~-~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEc-ccCeEEEeccCCCcceeEeccCCCce
Confidence            44566777643 3 45555667889999998665544443 456789999999 444444433  334677777776555


Q ss_pred             EEecc-CCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909          344 VDWAD-VRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  421 (626)
Q Consensus       344 ~~~~~-~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d  421 (626)
                      ..+.. .-...+.+++.+.++.|+.+ ...+.|...++.+...... .....    ......++++..+  .++.+-..+
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~-~~~~~----~~~~p~~lav~~~--~ly~td~~~  228 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI-LEDEK----RLAHPFSLAVFED--KVFWTDIIN  228 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-EECTT----TTSSEEEEEEETT--EEEEEETTT
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEE-EeCCC----cccccEEEEEECC--EEEEEECCC
Confidence            44433 33567899999987777665 4567899999876543221 11111    1134567777743  455555566


Q ss_pred             CcEEEEeCCc
Q 006909          422 SKLRILDGVD  431 (626)
Q Consensus       422 g~i~iwd~~~  431 (626)
                      +.|...+..+
T Consensus       229 ~~I~~~~~~~  238 (266)
T d1ijqa1         229 EAIFSANRLT  238 (266)
T ss_dssp             TEEEEEETTT
T ss_pred             CeEEEEECCC
Confidence            7777777443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.24  E-value=1.4  Score=42.39  Aligned_cols=202  Identities=10%  Similarity=0.050  Sum_probs=102.9

Q ss_pred             CccceEEEEEcCCC-eEE-EEeCC----CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC----------
Q 006909          267 HKGDVLDLAWSNSN-YLL-SCSMD----KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID----------  330 (626)
Q Consensus       267 h~~~V~~l~~s~~~-~l~-s~s~d----~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d----------  330 (626)
                      +.-.+..++++|++ +++ +-+.+    ..|++.|+.+++.+...-.......++|.+ ++..|+....+          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence            33445566788988 433 44433    369999999998765321112235688998 88877654432          


Q ss_pred             ------CcEEEEeCCCCe---EEEecc--CCCCeEEEEEeeCCCEEEEEec---CCcEEEE--EcCCCceeee----EEe
Q 006909          331 ------GKVRIWGVCEKR---VVDWAD--VRDVISAICYIPDGKGFIVGSI---TGTCHFY--KASGNDLKLE----KVD  390 (626)
Q Consensus       331 ------g~v~iwd~~~~~---~~~~~~--~~~~i~~i~~sp~g~~l~~g~~---dg~i~i~--d~~~~~~~~~----~~~  390 (626)
                            ..|..+.+.+..   ......  ....+..+..++++++++....   ++...+|  ++........    ...
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  257777776532   222222  2334667788899999876443   2333444  4433221110    000


Q ss_pred             eccccccCCCCeEEEEEcCCCCcEEEEEeC---CCcEEEEeCCccee---eeeecCCCCCeEEEEEcCCCCEEEEE-eCC
Q 006909          391 FHDRKKTSGNKITGIQFSRDESQRIMITSE---DSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISI-GDD  463 (626)
Q Consensus       391 ~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~---dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~s~-s~d  463 (626)
                      ....   ......-+. +.++ .+++....   ++.|...++.+...   ......+...+..-.++..+.+|+.. ..+
T Consensus       282 ~~~~---~~~~~~~~~-~~~~-~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~  356 (430)
T d1qfma1         282 LIDN---FEGEYDYVT-NEGT-VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (430)
T ss_dssp             EECS---SSSCEEEEE-EETT-EEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             eecc---cccceEEEe-cCCc-eeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcC
Confidence            0000   012222222 2222 34444433   35666666553221   11112234445444444555666554 345


Q ss_pred             --ccEEEEECCCC
Q 006909          464 --CRVYVWNYDEL  474 (626)
Q Consensus       464 --g~I~iwd~~~~  474 (626)
                        ..|+++++.++
T Consensus       357 ~~~~l~v~~~~~~  369 (430)
T d1qfma1         357 VKNTLQLHDLATG  369 (430)
T ss_dssp             TEEEEEEEETTTC
T ss_pred             CEeEEEEEECCCC
Confidence              46888998765

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.17  E-value=1.9  Score=43.33  Aligned_cols=49  Identities=10%  Similarity=-0.124  Sum_probs=30.9

Q ss_pred             CCCEEEEEeCCccEEEEECCCCCCCCCCccCCc--cceeeeccCCc-EEEEe
Q 006909          453 TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV--RSCEHFFSEGV-SVAVQ  501 (626)
Q Consensus       453 ~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--~~~~~~~~~g~-~~av~  501 (626)
                      .+.+|++|+.|+.++.+|.+++...........  .+-+.+..+|+ +++++
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEE
Confidence            466888899999999999999865544433211  12234455665 34444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.10  E-value=1.6  Score=42.08  Aligned_cols=245  Identities=11%  Similarity=0.020  Sum_probs=118.1

Q ss_pred             cccCcEEEEEEcCCCCEEEEEe-CC----CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909          179 AHKGCIWTLKFSPDGRYLASGG-ED----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  253 (626)
Q Consensus       179 ~H~~~V~~l~fspdg~~Latgs-~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (626)
                      ++.-.+...++|||++++|-+- ..    ..|+++|+.+++....                                   
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-----------------------------------  166 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-----------------------------------  166 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------------------------
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-----------------------------------
Confidence            3444455678899999888542 23    3699999998543211                                   


Q ss_pred             ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCC----------------CcEEEeccCCCeee--Eeec---CCCCe
Q 006909          254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD----------------KTVRMWQVGCNQCL--NVFD---HHNYV  311 (626)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d----------------~~v~iwd~~~~~~~--~~~~---~~~~v  311 (626)
                               .+.  ......++|.+++ .|+-...+                ..|..|.+.+...-  ..+.   ....+
T Consensus       167 ---------~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~  235 (430)
T d1qfma1         167 ---------VLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM  235 (430)
T ss_dssp             ---------EEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             ---------ccc--cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceE
Confidence                     111  1112457888876 44433221                25777777665432  2332   23356


Q ss_pred             EEEEEeeCCCCEEEEEeC---CCc--EEEEeCCCCe--------EEEeccCCCCeEEEEEeeCCCEEEEEe---cCCcEE
Q 006909          312 TCVQFNPIDDNYFISGSI---DGK--VRIWGVCEKR--------VVDWADVRDVISAICYIPDGKGFIVGS---ITGTCH  375 (626)
Q Consensus       312 ~~~~~~p~~~~~l~s~s~---dg~--v~iwd~~~~~--------~~~~~~~~~~i~~i~~sp~g~~l~~g~---~dg~i~  375 (626)
                      ..+..++ ++++++....   +..  +.+.|+....        ...............-+.++.+++...   .++.|.
T Consensus       236 ~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~  314 (430)
T d1qfma1         236 GGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLI  314 (430)
T ss_dssp             EEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEE
T ss_pred             EeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccCcccccceeE
Confidence            6777787 8888764332   233  3444543211        111111112222222223333333332   235666


Q ss_pred             EEEcCCCceee-eEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEeCCcceeeeeecCCCCCeEEEEEcC
Q 006909          376 FYKASGNDLKL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTT  452 (626)
Q Consensus       376 i~d~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp  452 (626)
                      ..++....... ..+..+.     ...+..-.+...+..+++....++  .|++++..............+.+..+...+
T Consensus       315 ~~~~~~~~~~~w~~vi~~~-----~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~  389 (430)
T d1qfma1         315 NIDFTDPEESKWKVLVPEH-----EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK  389 (430)
T ss_dssp             EEETTBCCGGGCEEEECCC-----SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCT
T ss_pred             EecCCCCccccceEEeccc-----CcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCC
Confidence            66665543221 1111111     133433233332213444444554  578888764333222233344555555555


Q ss_pred             CCCEEEEE-eC---CccEEEEECCCCC
Q 006909          453 TGKHIISI-GD---DCRVYVWNYDELC  475 (626)
Q Consensus       453 ~g~~l~s~-s~---dg~I~iwd~~~~~  475 (626)
                      +...+... ++   -.+++-+|+.++.
T Consensus       390 ~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         390 KDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            55544332 21   2678888888763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.73  E-value=3.1  Score=41.67  Aligned_cols=84  Identities=10%  Similarity=0.010  Sum_probs=49.9

Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      |.|.-+|+.+++.+=.........+-.+.-.+..+++|+.||.++.+|.++++...+ ..+..  .....+   +.|..+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~-~~l~~--~~~a~P---~ty~~d  517 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN-FKMPS--GGIGSP---MTYSFK  517 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS--CCCSCC---EEEEET
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEE-EECCC--Cceecc---eEEEEC
Confidence            356677777777653322222222212233566888899999999999999987644 22221  111222   555668


Q ss_pred             CCcEEEEEeC
Q 006909          411 ESQRIMITSE  420 (626)
Q Consensus       411 ~~~~l~~~s~  420 (626)
                      |.+++++...
T Consensus       518 GkqYi~v~~g  527 (571)
T d2ad6a1         518 GKQYIGSMYG  527 (571)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            8778877654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.39  E-value=1.4  Score=40.89  Aligned_cols=182  Identities=11%  Similarity=0.082  Sum_probs=97.1

Q ss_pred             eEEEEEcCCCeEE-EEeC------------CCcEEEeccCCCeeeE-eec---C-----CCCeEEEEEeeC-CCC-EEEE
Q 006909          271 VLDLAWSNSNYLL-SCSM------------DKTVRMWQVGCNQCLN-VFD---H-----HNYVTCVQFNPI-DDN-YFIS  326 (626)
Q Consensus       271 V~~l~~s~~~~l~-s~s~------------d~~v~iwd~~~~~~~~-~~~---~-----~~~v~~~~~~p~-~~~-~l~s  326 (626)
                      .-+|+..|+|.++ +++.            .|.|.++|+.+..... .+.   .     .-....+.+... ++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            3467778888433 3321            3889999987653322 111   1     012344544321 344 3444


Q ss_pred             Ee---CCCcEEEEeCCC--CeEEEe--c--cCCCCeEEEEEeeCCCEEEEEec---------------CCcEEEEEcCCC
Q 006909          327 GS---IDGKVRIWGVCE--KRVVDW--A--DVRDVISAICYIPDGKGFIVGSI---------------TGTCHFYKASGN  382 (626)
Q Consensus       327 ~s---~dg~v~iwd~~~--~~~~~~--~--~~~~~i~~i~~sp~g~~l~~g~~---------------dg~i~i~d~~~~  382 (626)
                      ..   ...+|.+|++..  .++...  .  ......+.+.+..+|..+++-..               -+...+|.....
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            32   345788887643  222221  1  22345788999999987777321               123344444444


Q ss_pred             ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCC-CCEEEE
Q 006909          383 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTT-GKHIIS  459 (626)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~-g~~l~s  459 (626)
                      .....   ..+     ......|+++|++..++++-+..+.|++|+....  ........-...+-.+.+.+. |.+.+.
T Consensus       197 ~~~~~---~~~-----l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         197 DVRVV---AEG-----FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             CEEEE---EEE-----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             ceEEE---cCC-----CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            33221   111     1568899999998666667777899999986522  111111113345566777654 444444


Q ss_pred             E
Q 006909          460 I  460 (626)
Q Consensus       460 ~  460 (626)
                      +
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.27  E-value=3.2  Score=40.08  Aligned_cols=110  Identities=12%  Similarity=0.128  Sum_probs=63.6

Q ss_pred             CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec---------cCCCCeEEEEEeeC---CCEEEEEec-----
Q 006909          308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA---------DVRDVISAICYIPD---GKGFIVGSI-----  370 (626)
Q Consensus       308 ~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---------~~~~~i~~i~~sp~---g~~l~~g~~-----  370 (626)
                      -...++|+|.| ++++|++--..|.|++++..++......         ........|+++|+   ..++.+...     
T Consensus        26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            45678999999 9988887655799999998777654322         22356788999995   344544321     


Q ss_pred             --C----C--cEEEEEcCCCceeee--EEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909          371 --T----G--TCHFYKASGNDLKLE--KVDFHDRKKTSGNKITGIQFSRDESQRIMITS  419 (626)
Q Consensus       371 --d----g--~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s  419 (626)
                        +    .  .+..+..........  ...+.............|.|.||| .++++.+
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG-~LYvs~G  162 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCC-CEEEEec
Confidence              0    1  233444443332221  111111112223456789999998 4555444

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.02  E-value=3.4  Score=38.19  Aligned_cols=142  Identities=10%  Similarity=0.094  Sum_probs=84.0

Q ss_pred             cEEEeccCC-CeeeEeec--------CCCCeEEEEE--eeCCCC-EEEEEeCCCcEEEEeCC---CC----eEEEeccCC
Q 006909          290 TVRMWQVGC-NQCLNVFD--------HHNYVTCVQF--NPIDDN-YFISGSIDGKVRIWGVC---EK----RVVDWADVR  350 (626)
Q Consensus       290 ~v~iwd~~~-~~~~~~~~--------~~~~v~~~~~--~p~~~~-~l~s~s~dg~v~iwd~~---~~----~~~~~~~~~  350 (626)
                      +|.+|.+.. ...+..+.        ....+..+++  +|.++. ++++...+|.+..|.+.   .+    +.+......
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            577887742 22333332        1123556666  564454 45666778998888663   22    234455667


Q ss_pred             CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC--CCC-cEEEEEeCCCcEEEE
Q 006909          351 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DES-QRIMITSEDSKLRIL  427 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~--~~~-~~l~~~s~dg~i~iw  427 (626)
                      ..+..|.+......|.++-.+..+..++..........+............+..|+.-.  ++. .+|++.-.+++..||
T Consensus       180 ~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vy  259 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIY  259 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             CccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEE
Confidence            78999999999999999998887777776533222221111111112246778887643  332 444455557899999


Q ss_pred             eCCc
Q 006909          428 DGVD  431 (626)
Q Consensus       428 d~~~  431 (626)
                      |...
T Consensus       260 dr~~  263 (353)
T d1h6la_         260 ERQG  263 (353)
T ss_dssp             ESST
T ss_pred             ecCC
Confidence            9653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.82  E-value=2  Score=40.42  Aligned_cols=95  Identities=9%  Similarity=0.002  Sum_probs=60.3

Q ss_pred             ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe--
Q 006909          270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--  346 (626)
Q Consensus       270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~--  346 (626)
                      .|..++|+.+. |+.. .++.+..++...-...... ....++..+.++|   ..++....++.+.++++..+.....  
T Consensus        88 ~v~~vafs~d~-l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGDQ-VLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETTE-EEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCCE-EEEE-eCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence            58889997654 3333 4455777776543322222 2456788888766   4566677789999999987754332  


Q ss_pred             ----ccCCCCeEEEEEeeCCCEEEEEe
Q 006909          347 ----ADVRDVISAICYIPDGKGFIVGS  369 (626)
Q Consensus       347 ----~~~~~~i~~i~~sp~g~~l~~g~  369 (626)
                          ......+.+++|++.|+.++++.
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeC
Confidence                12345577777777777777663

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.40  E-value=0.86  Score=46.14  Aligned_cols=80  Identities=14%  Similarity=0.087  Sum_probs=56.8

Q ss_pred             CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCe--EEEEEeeCCC-E
Q 006909          288 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI--SAICYIPDGK-G  364 (626)
Q Consensus       288 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i--~~i~~sp~g~-~  364 (626)
                      .|.|.-+|+.+++.+..+....++..-.... .+.++++|+.||.++.+|..+|+.+-.......+  .-+.|..+|+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678889999999988886544444333344 6788889999999999999999987544333322  2367778886 4


Q ss_pred             EEEE
Q 006909          365 FIVG  368 (626)
Q Consensus       365 l~~g  368 (626)
                      +++.
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.27  E-value=1.1  Score=45.19  Aligned_cols=86  Identities=13%  Similarity=0.158  Sum_probs=54.2

Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      |.|.-+|+.+++++-.........+-.+.-.|.++++|+.||.++.||..+++...+ .....  .....+   +.+..+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~-~~l~~--~~~~~P---~ty~~d  511 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ-FEAQS--GIVAAP---MTFELA  511 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS--CCCSCC---EEEEET
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE-EECCC--CccccC---EEEEEC
Confidence            457778888887764444333333333444567888999999999999999987654 22221  111222   455567


Q ss_pred             CCcEEEEEeCCC
Q 006909          411 ESQRIMITSEDS  422 (626)
Q Consensus       411 ~~~~l~~~s~dg  422 (626)
                      |.++|++.+..|
T Consensus       512 Gkqyv~v~aG~g  523 (560)
T d1kv9a2         512 GRQYVAIMAGWG  523 (560)
T ss_dssp             TEEEEEEEECCC
T ss_pred             CEEEEEEEeCCC
Confidence            777877766544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.15  E-value=1.8  Score=43.44  Aligned_cols=80  Identities=8%  Similarity=0.080  Sum_probs=56.0

Q ss_pred             CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeE--EEEEeeCCC-EE
Q 006909          289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS--AICYIPDGK-GF  365 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~--~i~~sp~g~-~l  365 (626)
                      |.|.-||+.+++.+..+....+..+-.+.- .+.+++.|+.||.++.+|..+++.+-.......+.  -+.|..+|+ +|
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            578889999999988876554444333333 67888899999999999999999875443333322  356667886 45


Q ss_pred             EEEe
Q 006909          366 IVGS  369 (626)
Q Consensus       366 ~~g~  369 (626)
                      ++..
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.29  E-value=3.6  Score=34.59  Aligned_cols=151  Identities=9%  Similarity=0.138  Sum_probs=86.4

Q ss_pred             cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec--CC--------CCeEEEEEeeCCCCEEEEEeC-CCcEEEEe
Q 006909          269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HH--------NYVTCVQFNPIDDNYFISGSI-DGKVRIWG  337 (626)
Q Consensus       269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~--------~~v~~~~~~p~~~~~l~s~s~-dg~v~iwd  337 (626)
                      -.|.++++...+..++|+......+|-++.|+......  .-        +.|..+.+...+..-|+++.. .|.+++++
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            56778887776788899888889999998887655432  22        233333333212223444433 44455554


Q ss_pred             CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-Cc--EEEEEcCCCceeeeEEeeccc--cccCCCCeEEEEEcCCCC
Q 006909          338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GT--CHFYKASGNDLKLEKVDFHDR--KKTSGNKITGIQFSRDES  412 (626)
Q Consensus       338 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g~--i~i~d~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~~~  412 (626)
                                ...+.++...+.+..+. +++... |.  ..-+|++.+..  +.+.+...  .......|+-+-+.|++ 
T Consensus       184 ----------pkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~y--erve~P~kd~~sy~p~~I~~~~Y~Pdd-  249 (313)
T d2hu7a1         184 ----------SGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSV--EDLELPSKDFSSYRPTAITWLGYLPDG-  249 (313)
T ss_dssp             ----------CSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCE--EECCCSSCHHHHHCCSEEEEEEECTTS-
T ss_pred             ----------CCCCcccceeEccCcee-eeccCCCCceEEEEEecccCce--eeeecCcccceeecceEEEeeeeCCCC-
Confidence                      44455555566665544 444322 22  22345555443  22333221  11123456667799997 


Q ss_pred             cEEEEEeCCCcEEEEeCCcce
Q 006909          413 QRIMITSEDSKLRILDGVDVI  433 (626)
Q Consensus       413 ~~l~~~s~dg~i~iwd~~~~~  433 (626)
                      ++++++-.||.=+++.-.+.+
T Consensus       250 ~L~iiakrdG~s~lF~nGk~i  270 (313)
T d2hu7a1         250 RLAVVARREGRSAVFIDGERV  270 (313)
T ss_dssp             CEEEEEEETTEEEEEETTEEE
T ss_pred             cEEEEEecCCchheeecceEe
Confidence            677999999999999855433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.21  E-value=1.1  Score=45.23  Aligned_cols=85  Identities=11%  Similarity=0.089  Sum_probs=50.2

Q ss_pred             cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909          332 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  411 (626)
Q Consensus       332 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~  411 (626)
                      .+.-||+.+++.+=......+...-...-.|..+++|+.||.++.||.++++...+ .....  .....+   +.|..+|
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~-~~~~~--~~~~~P---~ty~~~G  531 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE-APTGT--GVVAAP---STYMVDG  531 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS--CCCSCC---EEEEETT
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEE-EECCC--CccccC---EEEEECC
Confidence            45666777666553322222222222334677888999999999999999987654 22221  112233   4455677


Q ss_pred             CcEEEEEeCCC
Q 006909          412 SQRIMITSEDS  422 (626)
Q Consensus       412 ~~~l~~~s~dg  422 (626)
                      .+++++.+.-+
T Consensus       532 kQYv~v~~G~g  542 (573)
T d1kb0a2         532 RQYVSVAVGWG  542 (573)
T ss_dssp             EEEEEEEECCC
T ss_pred             EEEEEEEeCCC
Confidence            77777765533

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.47  E-value=1.1  Score=45.33  Aligned_cols=85  Identities=12%  Similarity=0.098  Sum_probs=52.0

Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      |.|.-||+.+++++=......++.+-.++-.|..+++|+.||.++.||..+++...+. ....  .....+   +.|..+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~-~~~~--~~~a~P---~tY~~d  526 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF-KIPS--GAIGYP---MTYTHK  526 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE-ECSS--CCCSCC---EEEEET
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEE-ECCC--CcccCC---eEEEEC
Confidence            4577777777776533333333322233446778888999999999999999876542 2221  122233   345557


Q ss_pred             CCcEEEEEeCC
Q 006909          411 ESQRIMITSED  421 (626)
Q Consensus       411 ~~~~l~~~s~d  421 (626)
                      |.+++++...-
T Consensus       527 GkQYvav~~G~  537 (596)
T d1w6sa_         527 GTQYVAIYYGV  537 (596)
T ss_dssp             TEEEEEEEECC
T ss_pred             CEEEEEEEecC
Confidence            87788776543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.60  E-value=4.8  Score=38.76  Aligned_cols=111  Identities=18%  Similarity=0.215  Sum_probs=61.8

Q ss_pred             CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc--ccccCCCCeEEEEEcCCC--CcEEEEEeC------
Q 006909          351 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD--RKKTSGNKITGIQFSRDE--SQRIMITSE------  420 (626)
Q Consensus       351 ~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~s~~~--~~~l~~~s~------  420 (626)
                      ....+|+|.|+|+.+++--..|.|++++..+...... .....  ...........|+|+|+-  ..++.....      
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i-~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTV-FQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-EECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeec-ccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            4677999999998877765579999998776654321 11111  111223678899999851  123333211      


Q ss_pred             -C----CcEEE--EeCC-------cceeeeee--cCCCCCeEEEEEcCCCCEEEEEeC
Q 006909          421 -D----SKLRI--LDGV-------DVIHKFKG--LPKSGSQMSASFTTTGKHIISIGD  462 (626)
Q Consensus       421 -d----g~i~i--wd~~-------~~~~~~~~--~~~~~~v~~~~~sp~g~~l~s~s~  462 (626)
                       +    +...+  +...       .....+..  .........+.|.|||.+.++.++
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             1    12222  2211       11111222  122245678999999998887764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=89.52  E-value=4.5  Score=37.35  Aligned_cols=151  Identities=11%  Similarity=0.184  Sum_probs=87.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee----CCC--EEEEEec-C---CcEEEEEcCCCceeeeEE
Q 006909          320 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP----DGK--GFIVGSI-T---GTCHFYKASGNDLKLEKV  389 (626)
Q Consensus       320 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp----~g~--~l~~g~~-d---g~i~i~d~~~~~~~~~~~  389 (626)
                      ...+++.....+-|++||+...++....  .+.++.|..-.    .++  -+++++. +   .+|.+|.+.........+
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             CccEEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            4466776666667999999755554432  35566665442    222  3445542 2   368888886544333222


Q ss_pred             eeccc-cccCCCCeEEEEE--cCC-CCcEEEEEeCCCcEEEEeCC---cc---eeeeeecCCCCCeEEEEEcCCCCEEEE
Q 006909          390 DFHDR-KKTSGNKITGIQF--SRD-ESQRIMITSEDSKLRILDGV---DV---IHKFKGLPKSGSQMSASFTTTGKHIIS  459 (626)
Q Consensus       390 ~~~~~-~~~~~~~i~~l~~--s~~-~~~~l~~~s~dg~i~iwd~~---~~---~~~~~~~~~~~~v~~~~~sp~g~~l~s  459 (626)
                      ..... .......+.++++  ++. |..++++...+|.+..|.+.   +.   ............+..|.+.+....|+.
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEE
Confidence            11110 0111234677777  554 33356777788998888642   11   112222234567889999999999999


Q ss_pred             EeCCccEEEEECC
Q 006909          460 IGDDCRVYVWNYD  472 (626)
Q Consensus       460 ~s~dg~I~iwd~~  472 (626)
                      +-++.-|..++.+
T Consensus       197 sEE~~Giw~~~a~  209 (353)
T d1h6la_         197 AEEDEAIWKFSAE  209 (353)
T ss_dssp             EETTTEEEEEESS
T ss_pred             ecCccceEEEEec
Confidence            9888766666654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.44  E-value=11  Score=37.44  Aligned_cols=53  Identities=13%  Similarity=0.002  Sum_probs=33.3

Q ss_pred             CCCCEEEEEeCCccEEEEECCCCCCCCCCccC--CccceeeeccCCc-EEEEecCC
Q 006909          452 TTGKHIISIGDDCRVYVWNYDELCFPSSKQKN--SVRSCEHFFSEGV-SVAVQWPG  504 (626)
Q Consensus       452 p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~~~~~~~~~g~-~~av~~s~  504 (626)
                      -.|.+++.|+.||.++.+|..++.........  ....-+.+..+|+ ++++....
T Consensus       482 TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~G~  537 (596)
T d1w6sa_         482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGV  537 (596)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred             ecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEEecC
Confidence            35778889999999999999999655443322  1222234445664 45554433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.17  E-value=1.9  Score=43.42  Aligned_cols=84  Identities=15%  Similarity=0.098  Sum_probs=52.8

Q ss_pred             CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909          331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  410 (626)
Q Consensus       331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  410 (626)
                      |.|.-+|+.++++.=......++..-.++..|..+++|+.||.++.||..+++...+ .....  .....+   +.|..+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~-~~~~~--~~~~~P---~ty~~~  539 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK-FQTGS--GIVSPP---ITWEQD  539 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS--CCCSCC---EEEEET
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEE-EECCC--CccccC---EEEEEC
Confidence            457777877777654333333333323445677888899999999999999987654 22221  112223   566678


Q ss_pred             CCcEEEEEeC
Q 006909          411 ESQRIMITSE  420 (626)
Q Consensus       411 ~~~~l~~~s~  420 (626)
                      |.+++++.+.
T Consensus       540 G~qYv~i~ag  549 (582)
T d1flga_         540 GEQYLGVTVG  549 (582)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEeC
Confidence            8777776553

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.16  E-value=4.9  Score=33.74  Aligned_cols=188  Identities=12%  Similarity=0.113  Sum_probs=100.6

Q ss_pred             CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCC-CCEEEEE------eCCCcEEEEeCCC-CeEEEeccCC
Q 006909          279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID-DNYFISG------SIDGKVRIWGVCE-KRVVDWADVR  350 (626)
Q Consensus       279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~------s~dg~v~iwd~~~-~~~~~~~~~~  350 (626)
                      +..++.+...|.+.++-+..++.++...  .+|... ..|.. -.++..+      -.-..|.+-++.. ++.......+
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~vkLtk--ePI~~~-~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk  102 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGETVKLNR--EPINSV-LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK  102 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSCEECCS--SCCSEE-CEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSC
T ss_pred             CcEEEEEeccceEEEEEEeCCEEEEEec--ccccCc-CCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCc
Confidence            3477888888999999888777665432  222221 12211 1122221      1123455556542 3333333333


Q ss_pred             -CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc---cccCCCCeEEEEEcCCCCcEEEEEeC-CCcEE
Q 006909          351 -DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTSGNKITGIQFSRDESQRIMITSE-DSKLR  425 (626)
Q Consensus       351 -~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~l~~~s~-dg~i~  425 (626)
                       -.|.++++. +.+.+.+|+......+|-+.++.+..- .....-   ......-|..+.+-..++.-++++.- .|.++
T Consensus       103 ~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL-~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr  180 (313)
T d2hu7a1         103 PMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLREL-ARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  180 (313)
T ss_dssp             SBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEE-EEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred             eEEEEEeeec-CceEEEecccCCceEEEEEeCCceeee-ccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence             445555543 344666788888889999888775322 111110   01112456666665444455666666 78888


Q ss_pred             EEeCCcceeeeee----------------------cC------------------CCCCeEEEEEcCCCCEEEEEeCCcc
Q 006909          426 ILDGVDVIHKFKG----------------------LP------------------KSGSQMSASFTTTGKHIISIGDDCR  465 (626)
Q Consensus       426 iwd~~~~~~~~~~----------------------~~------------------~~~~v~~~~~sp~g~~l~s~s~dg~  465 (626)
                      |++..+.......                      ..                  ....|.-+-+.|++++++.+-.||.
T Consensus       181 i~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~  260 (313)
T d2hu7a1         181 VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR  260 (313)
T ss_dssp             EECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred             EecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCc
Confidence            8874421111000                      00                  0112333447888888888888888


Q ss_pred             EEEEEC
Q 006909          466 VYVWNY  471 (626)
Q Consensus       466 I~iwd~  471 (626)
                      -.+|.-
T Consensus       261 s~lF~n  266 (313)
T d2hu7a1         261 SAVFID  266 (313)
T ss_dssp             EEEEET
T ss_pred             hheeec
Confidence            888864

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=85.14  E-value=1.6  Score=43.99  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=55.4

Q ss_pred             CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEE--EEEeeCCC-EE
Q 006909          289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA--ICYIPDGK-GF  365 (626)
Q Consensus       289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~--i~~sp~g~-~l  365 (626)
                      |.|.-||+.+++.+..+....+...-...- .+.++++|+.||.++.+|..+++.+-.......+.+  +.|..+|+ ++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            568899999999998886544433222333 678999999999999999999998754443333222  56667886 44


Q ss_pred             EEEe
Q 006909          366 IVGS  369 (626)
Q Consensus       366 ~~g~  369 (626)
                      ++.+
T Consensus       536 ~v~~  539 (573)
T d1kb0a2         536 SVAV  539 (573)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4433