Citrus Sinensis ID: 006911
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 626 | 2.2.26 [Sep-21-2011] | |||||||
| O65717 | 716 | Cyclic nucleotide-gated i | yes | no | 0.792 | 0.692 | 0.353 | 2e-93 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.792 | 0.712 | 0.359 | 2e-93 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.784 | 0.690 | 0.356 | 8e-91 | |
| Q9SKD7 | 706 | Probable cyclic nucleotid | no | no | 0.789 | 0.699 | 0.352 | 8e-88 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.768 | 0.656 | 0.327 | 2e-79 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.769 | 0.645 | 0.329 | 4e-79 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.773 | 0.675 | 0.325 | 2e-76 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.784 | 0.665 | 0.307 | 1e-72 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.798 | 0.664 | 0.303 | 2e-72 | |
| Q9SL29 | 678 | Putative cyclic nucleotid | no | no | 0.656 | 0.606 | 0.332 | 2e-66 |
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 343 bits (881), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 195/551 (35%), Positives = 296/551 (53%), Gaps = 55/551 (9%)
Query: 10 QWPYFD-WMKI--IFSVIEIQVEALYFYAPVINDERKCFDMHQQFLENAFVLGFF---LI 63
Q P+ W KI + +I + ++ L+FY P+I+D +KC + ++ A VL F
Sbjct: 88 QGPFLQRWNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFY 147
Query: 64 CIHMV------------------IFLSYKNPLG-------FVINFLIYYSILAMAGIILL 98
+H++ + + K + F+I+ L + M +I++
Sbjct: 148 VLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDILAVLPLPQMVILIII 207
Query: 99 EKQGYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSSTELSEAKWVKIAVNLYLYL 158
+ K ++ +Y+ R I IY L+ + R+S L+E W A NL+LY+
Sbjct: 208 PHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYM 267
Query: 159 QAANVFGGLWYFMAIERVIECWTKACINHTGQHC---HFSCRVNLEEDRTYINGFCPTKI 215
A++VFG WY +IER CW +AC C C ++N CP +
Sbjct: 268 LASHVFGAFWYLFSIERETVCWKQAC-ERNNPPCISKLLYCDPETAGGNAFLNESCPIQT 326
Query: 216 RNTTIHDFGIFHGALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVI 275
NTT+ DFGIF AL+SG+VE QK +CF WGLQNLS+LG +L++ + +WE F +
Sbjct: 327 PNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAV 386
Query: 276 LVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKP 335
+ +G + F+ LIGNMQ YLQS T RL+EM VK R+ E+W + L NL++ +++Y+
Sbjct: 387 FISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQ 446
Query: 336 YIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTF 395
Y ++T +D ENLL+N+PK+L + IKR LC LL +V F + E+ LDALCD ++P
Sbjct: 447 YKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVL 506
Query: 396 FTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALR 455
+TE ++I+REGDP+DE++F+M+G L T + N G ++L DF G EL+ WAL
Sbjct: 507 YTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNS-EYLGAGDFCGEELLTWALD 565
Query: 456 DCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNE--KMNQ-----------------A 496
S ST+T+ AL +EAF L ADDLK V ++ +++ A
Sbjct: 566 PHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRYYSQQWKTWA 625
Query: 497 ALVIQLAWRHY 507
A IQ AWR Y
Sbjct: 626 ACFIQAAWRRY 636
|
Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 626 | ||||||
| 225462733 | 709 | PREDICTED: cyclic nucleotide-gated ion c | 0.797 | 0.703 | 0.360 | 1e-94 | |
| 224135235 | 708 | predicted protein [Populus trichocarpa] | 0.797 | 0.704 | 0.359 | 2e-93 | |
| 255545024 | 838 | Cyclic nucleotide-gated ion channel, put | 0.793 | 0.593 | 0.357 | 2e-93 | |
| 297796139 | 716 | hypothetical protein ARALYDRAFT_918383 [ | 0.792 | 0.692 | 0.359 | 1e-92 | |
| 6969231 | 708 | cyclic nucleotide-gated calmodulin-bindi | 0.800 | 0.707 | 0.354 | 1e-91 | |
| 7484881 | 698 | cyclic nucleotide gated channel homolog | 0.792 | 0.710 | 0.359 | 1e-91 | |
| 297810063 | 697 | ATCNGC13 [Arabidopsis lyrata subsp. lyra | 0.792 | 0.711 | 0.366 | 1e-91 | |
| 15238657 | 716 | cyclic nucleotide-gated ion channel 1 [A | 0.792 | 0.692 | 0.353 | 1e-91 | |
| 22328204 | 696 | cyclic nucleotide-gated channel 13 [Arab | 0.792 | 0.712 | 0.359 | 1e-91 | |
| 356551532 | 718 | PREDICTED: cyclic nucleotide-gated ion c | 0.800 | 0.697 | 0.348 | 2e-90 |
| >gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 200/555 (36%), Positives = 307/555 (55%), Gaps = 56/555 (10%)
Query: 10 QWPYFD-WMKI--IFSVIEIQVEALYFYAPVINDERKCFDMHQQFLENAFVLGFFLICIH 66
Q P+ W KI + +I + ++ L+FY PVI+ +KC + + A VL F I
Sbjct: 85 QGPFLQKWNKIFVLSCIIAVSLDPLFFYIPVIDKLKKCLSLDESLQITASVLRSF-TDIF 143
Query: 67 MVIFLSYKNPLGFVI--------------------NFLIYYSILAMAGI---------IL 97
++ + ++ GF+ +L Y ++ + + I+
Sbjct: 144 YILHIIFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSYFLIDILAVLPLPQVVIWII 203
Query: 98 LEKQGYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSSTELSEAKWVKIAVNLYLY 157
+ K G + + + K ++ +Y+ R++ + L+ + R+S L+E W A NL+LY
Sbjct: 204 IPKLGGSKYMNTKRLLKFVVFFQYIPRVLRVRPLYKEVTRTSGILTETAWAGAAFNLFLY 263
Query: 158 LQAANVFGGLWYFMAIERVIECWTKACINHTGQ-HCHFSCRVNLEEDRTYINGFCPTKIR 216
+ A++V G WY AI+R CWTKAC N T C+ + + T N CP
Sbjct: 264 MLASHVLGAFWYLFAIDRETTCWTKACGNDTSCIDSSLYCKGTV--NTTLFNASCPVIEP 321
Query: 217 NTTIHDFGIFHGALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVIL 276
NTT+ DFGI AL+SG+VE T QK +CF WGLQNLS+LG +L++ + VWE F +
Sbjct: 322 NTTVFDFGILLDALQSGVVESTDFPQKFFYCFWWGLQNLSSLGQNLKTSTYVWEICFAVF 381
Query: 277 VVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPY 336
+ SG + F+ LIGNMQ YLQS T+RL+EM VK R+ E+W + L +L++ +++Y+ Y
Sbjct: 382 ISISGLVLFSFLIGNMQTYLQSTTIRLEEMRVKRRDAEQWMSHRLLPESLRERIRRYEQY 441
Query: 337 IRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFF 396
++T +D +NLL N+PK+L + IKR LC LL++V F + E+ +DA+CD +KP +
Sbjct: 442 KWQETRGVDEQNLLINLPKDLRRDIKRHLCLALLRRVPMFEKMDEQLMDAMCDRLKPALY 501
Query: 397 TEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRD 456
TE ++I+REGDP+DE++FVM+G L T + N G D+L+ DF G EL+ WAL
Sbjct: 502 TEDSYIVREGDPVDEMLFVMRGKLSTMTTNGGRTGFLNS-DYLKAGDFCGEELLTWALDP 560
Query: 457 CSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNE--KMNQ-----------------AA 497
S ST+T+ AL+ +EAF LMADDLK V ++ +++ AA
Sbjct: 561 HSTSNLPISTRTVLALSEVEAFALMADDLKFVASQFRRLHSKQLRHTFRLYSHQWRTWAA 620
Query: 498 LVIQLAWRHYTRRKF 512
IQ AWR Y R+K
Sbjct: 621 CFIQAAWRRYWRKKL 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|6969231|gb|AAF33670.1|AF079872_1 cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
| >gi|7484881|pir||T10541 cyclic nucleotide gated channel homolog F3I3.30 - Arabidopsis thaliana | Back alignment and taxonomy information |
|---|
| >gi|297810063|ref|XP_002872915.1| ATCNGC13 [Arabidopsis lyrata subsp. lyrata] gi|297318752|gb|EFH49174.1| ATCNGC13 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|22328204|ref|NP_192010.2| cyclic nucleotide-gated channel 13 [Arabidopsis thaliana] gi|38503199|sp|Q9LD40.2|CNG13_ARATH RecName: Full=Putative cyclic nucleotide-gated ion channel 13; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 13 gi|332656566|gb|AEE81966.1| cyclic nucleotide-gated channel 13 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 626 | ||||||
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.683 | 0.597 | 0.390 | 2.3e-94 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.683 | 0.614 | 0.386 | 1.3e-88 | |
| TAIR|locus:2039084 | 706 | CNGC3 "cyclic nucleotide gated | 0.699 | 0.620 | 0.385 | 2.4e-85 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.674 | 0.575 | 0.364 | 3.1e-79 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.626 | 0.524 | 0.379 | 1e-78 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.678 | 0.592 | 0.351 | 4.3e-76 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.682 | 0.578 | 0.338 | 5.3e-72 | |
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.680 | 0.565 | 0.337 | 5.3e-69 | |
| TAIR|locus:2039099 | 621 | CNGC11 "cyclic nucleotide-gate | 0.698 | 0.703 | 0.327 | 1.4e-68 | |
| TAIR|locus:2118816 | 720 | CNGC17 "cyclic nucleotide-gate | 0.626 | 0.544 | 0.329 | 3.9e-66 |
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 2.3e-94, Sum P(3) = 2.3e-94
Identities = 169/433 (39%), Positives = 254/433 (58%)
Query: 79 FVINFLIYYSILAMAGIILLEKQGYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRS 138
F+I+ L + M +I++ + K ++ +Y+ R I IY L+ + R+
Sbjct: 188 FIIDILAVLPLPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRT 247
Query: 139 STELSEAKWVKIAVNLYLYLQAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFS--- 195
S L+E W A NL+LY+ A++VFG WY +IER CW +AC C
Sbjct: 248 SGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQAC-ERNNPPCISKLLY 306
Query: 196 CRVNLEEDRTYINGFCPTKIRNTTIHDFGIFHGALESGIVEGTSILQKLLHCFVWGLQNL 255
C ++N CP + NTT+ DFGIF AL+SG+VE QK +CF WGLQNL
Sbjct: 307 CDPETAGGNAFLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNL 366
Query: 256 SNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEE 315
S+LG +L++ + +WE F + + +G + F+ LIGNMQ YLQS T RL+EM VK R+ E+
Sbjct: 367 SSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQ 426
Query: 316 WKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHE 375
W + L NL++ +++Y+ Y ++T +D ENLL+N+PK+L + IKR LC LL +V
Sbjct: 427 WMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPM 486
Query: 376 FRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRK 435
F + E+ LDALCD ++P +TE ++I+REGDP+DE++F+M+G L T + N G
Sbjct: 487 FEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNS 546
Query: 436 RDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQ 495
++L DF G EL+ WAL S ST+T+ AL +EAF L ADDLK V ++
Sbjct: 547 -EYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRL 605
Query: 496 AALVIQLAWRHYT 508
+ ++ +R+Y+
Sbjct: 606 HSKQLRHTFRYYS 618
|
|
| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 626 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 4e-09 | |
| COG0810 | 244 | COG0810, TonB, Periplasmic protein TonB, links inn | 1e-04 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 5e-04 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 7e-04 | |
| COG0810 | 244 | COG0810, TonB, Periplasmic protein TonB, links inn | 0.002 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 0.002 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-09
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Query: 376 FRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRK 435
F L +E L+ L D ++ F IIR+GDP D L V+ G++ Y +G +
Sbjct: 2 FSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYK--LDEDGREQI 59
Query: 436 RDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDL 485
L D +G +L + T+ ALT+ E L D
Sbjct: 60 VGFLGPGDLFGEL---------ALLGNGPRSATVRALTDSELLVLPRSDF 100
|
In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 626 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.6 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.52 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.52 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.48 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.4 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.37 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.36 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.36 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.34 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.33 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.3 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.26 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.25 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.21 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 99.19 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.18 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.17 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.16 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 99.16 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.15 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 99.1 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.87 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.51 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 98.44 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.37 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 98.16 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 98.02 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.86 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.65 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.52 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 97.2 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.18 | |
| PF08412 | 77 | Ion_trans_N: Ion transport protein N-terminal; Int | 96.81 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.58 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.36 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 96.28 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 95.9 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 95.16 | |
| KOG2302 | 1956 | consensus T-type voltage-gated Ca2+ channel, pore- | 94.53 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 91.78 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 91.71 | |
| COG4709 | 195 | Predicted membrane protein [Function unknown] | 87.8 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 84.54 | |
| PF08006 | 181 | DUF1700: Protein of unknown function (DUF1700); In | 84.52 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-78 Score=656.93 Aligned_cols=454 Identities=31% Similarity=0.546 Sum_probs=394.0
Q ss_pred ceeecCCCCcc-chhHHH--HHHHHHhhccceeeeeeecCCCceeeeccccchHHHHHHHHH---HHHHHHHHc--eeeC
Q 006911 4 MLTLLRQWPYF-DWMKII--FSVIEIQVEALYFYAPVINDERKCFDMHQQFLENAFVLGFFL---ICIHMVIFL--SYKN 75 (626)
Q Consensus 4 ~~~i~P~s~~~-~W~~~~--~~~~~~~~~pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~i~---F~~Di~l~f--~y~~ 75 (626)
.+||+|.|+|+ .||.++ +|+++++++|++||++.....+.| .|......+++++.++ |++||+++| ||++
T Consensus 67 ~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~ 144 (727)
T KOG0498|consen 67 KWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVD 144 (727)
T ss_pred ceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEEC
Confidence 46999999999 999888 888899999999999999888888 6777778888888877 999999999 9999
Q ss_pred CCcc-EE--------Eecccc---hhHHHHH-HHhhccC--CCccccCchhHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 006911 76 PLGF-VI--------NFLIYY---SILAMAG-IILLEKQ--GYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSST 140 (626)
Q Consensus 76 ~~~~-v~--------~Ylk~~---D~is~lP-~~i~~~~--~~~~~~~~~~~lrl~~l~~~l~Rllr~~rl~~~~~~~~~ 140 (626)
+.+. ++ ||+|+| |++|++| +.+.... ++.....-...+..+.++++++||.|++++++.+.+..+
T Consensus 145 ~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~ 224 (727)
T KOG0498|consen 145 PSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTG 224 (727)
T ss_pred CCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9776 55 999999 9999999 6554321 121101112234445556678999999999999999999
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhccCCCceeeeeccCCcCCcccccccCCCCCCCCCc
Q 006911 141 ELSEAKWVKIAVNLYLYLQAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFSCRVNLEEDRTYINGFCPTKIRNTTI 220 (626)
Q Consensus 141 ~~~~~~~~~~~~~L~~~~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~g~~c~~~~~~~~~~~~sWi~~~~~~~~~~~~~ 220 (626)
+..+++|.+++++|+++++++||+||+||++|.++...||.+ .+|+...+..-+..+..
T Consensus 225 ~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~---------------------~tw~~~l~~~~~~~~~~ 283 (727)
T KOG0498|consen 225 FVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRK---------------------ATWLGSLGRLLSCYNLS 283 (727)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc---------------------cccccccccccccCccc
Confidence 998999999778899999999999999999998777666542 16776532100122333
Q ss_pred ccccccccccccCcccCchhHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006911 221 HDFGIFHGALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRT 300 (626)
Q Consensus 221 ~~~g~y~~~~~~~~~~~~~~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~ 300 (626)
++||+| +++.+|++|+||+++||||+||||++|+|..|++|+|++|++|.++||++||+|+++++..+
T Consensus 284 ~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~t 351 (727)
T KOG0498|consen 284 FTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLT 351 (727)
T ss_pred ccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHh
Confidence 567654 56679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchHHHHhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhhccccccCc
Q 006911 301 VRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLK 380 (626)
Q Consensus 301 ~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls 380 (626)
.+..+|+.++.++++||++++||++||+||++|++|+|+.++|+||++++++||..||.+|..++|.++++++|+|+++|
T Consensus 352 sR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md 431 (727)
T KOG0498|consen 352 SRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMD 431 (727)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCcc
Q 006911 381 EETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLF 460 (626)
Q Consensus 381 ~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~ 460 (626)
++++.+|+.++++..|.|||+|++|||+.++||||.+|.+++...++|.. .+...+++||+|||.-+.|++.
T Consensus 432 ~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~---~~~~~L~~Gd~~GeEl~~~~~~----- 503 (727)
T KOG0498|consen 432 DGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF---FVVAILGPGDFFGEELLTWCLD----- 503 (727)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce---EEEEEecCCCccchHHHHHHhc-----
Confidence 99999999999999999999999999999999999999999998776643 5678999999999654546553
Q ss_pred CccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHH
Q 006911 461 EFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQL 502 (626)
Q Consensus 461 ~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~ 502 (626)
.|+++||+|+|.|+++.|++++|..+++++|.+++.+++.
T Consensus 504 --~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~ 543 (727)
T KOG0498|consen 504 --LPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQH 543 (727)
T ss_pred --CCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHh
Confidence 1568899999999999999999999999999777777763
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG4709 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 626 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 3e-21 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-29
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 15/196 (7%)
Query: 296 LQSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPK 355
Q R + ++++++ L L Q M + N ID+ LL + P
Sbjct: 4 DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63
Query: 356 ELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFV 415
EL I L LL ++ F L +L +K +F +IR+GD + + FV
Sbjct: 64 ELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122
Query: 416 MQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNI 475
G++ L + + L D G++ + K+ ++ALT
Sbjct: 123 CSGSM-----EVLKDNTVLA--ILGKGDLIGSDSLTKEQV-------IKTNANVKALTYC 168
Query: 476 EAFTLMADDLKIVFNE 491
+ + L+ V
Sbjct: 169 DLQYISLKGLREVLRL 184
|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 626 | |||
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 100.0 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.97 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.97 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.97 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.82 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.81 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.74 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.72 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.72 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.71 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.71 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.7 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.7 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.7 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.69 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.68 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.68 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.67 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.65 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.65 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.65 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.65 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.65 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.64 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.64 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.63 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.61 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.6 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.6 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.6 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.59 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.59 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.59 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.59 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.58 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.57 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.56 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.56 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.55 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.54 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.52 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.52 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.51 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.51 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.51 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.51 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.51 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.48 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.47 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.47 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.45 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.45 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.45 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.39 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.36 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.34 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.31 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.31 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.27 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.27 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 99.21 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.19 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.17 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 99.09 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 99.05 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.99 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.93 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.92 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.8 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.72 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.7 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.67 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.66 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.58 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.55 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 98.42 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 97.84 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 94.47 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 93.15 |
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=304.11 Aligned_cols=194 Identities=19% Similarity=0.284 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhccc
Q 006911 240 ILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPF 319 (626)
Q Consensus 240 ~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 319 (626)
.+..|..|+||+++|||||||||++|.|..|+++++++|++|.+++++.+|.+++.+.+...+
T Consensus 158 ~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~----------------- 220 (355)
T 3beh_A 158 KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR----------------- 220 (355)
T ss_dssp HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 345688999999999999999999999999999999999999999999999998877542110
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCC
Q 006911 320 QNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEH 399 (626)
Q Consensus 320 ~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~g 399 (626)
+++.+ +.+.++++++|+++++++++.++..++.+.|+||
T Consensus 221 -----------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~g 259 (355)
T 3beh_A 221 -----------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAG 259 (355)
T ss_dssp -----------HHHHH------------------------------HHC-------------------------------
T ss_pred -----------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCC
Confidence 00100 2467888999999999999999999999999999
Q ss_pred cEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEE
Q 006911 400 AHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFT 479 (626)
Q Consensus 400 e~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~ 479 (626)
|.|+++||.++++|||.+|.|+++..+ + ..+++|++|||.+++ .+ .++.++++|.++|+++.
T Consensus 260 e~I~~~G~~~~~ly~I~~G~v~v~~~~---~------~~l~~G~~fGe~~~l---~~------~~~~~~~~A~~~~~l~~ 321 (355)
T 3beh_A 260 AVICRIGEPGDRMFFVVEGSVSVATPN---P------VELGPGAFFGEMALI---SG------EPRSATVSAATTVSLLS 321 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEeCCCcCceEEEEEeeEEEEEECC---e------eEECCCCEEeehHHh---CC------CCcceEEEECccEEEEE
Confidence 999999999999999999999998654 2 479999999999763 21 27888999999999999
Q ss_pred eCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006911 480 LMADDLKIVFNEKMNQAALVIQLAWRHYTR 509 (626)
Q Consensus 480 l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~ 509 (626)
+++++|.++++++|+++..+.+.+.+|+.+
T Consensus 322 i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~ 351 (355)
T 3beh_A 322 LHSADFQMLCSSSPEIAEIFRKTALERRGA 351 (355)
T ss_dssp ------------------------------
T ss_pred EeHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888877777643
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 626 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 1e-11 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 4e-07 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 1e-06 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 2e-06 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 7e-06 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 7e-06 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 2e-05 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 3e-05 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 5e-05 | |
| d1i5za2 | 132 | b.82.3.2 (A:6-137) Catabolite gene activator prote | 8e-04 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 0.002 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 60.3 bits (145), Expect = 1e-11
Identities = 47/123 (38%), Positives = 79/123 (64%), Gaps = 1/123 (0%)
Query: 369 LLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDL 428
+++V F + E LDA+C+ +KP FTE ++++REGDP++E++F+++G L + + +
Sbjct: 7 GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG- 65
Query: 429 TNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIV 488
R L++ DF G EL+ WAL S ST+T++ALT +EAF L+AD+LK V
Sbjct: 66 GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125
Query: 489 FNE 491
++
Sbjct: 126 ASQ 128
|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 626 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.81 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.76 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.76 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.75 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.75 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.73 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.73 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.72 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.68 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.66 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.63 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.62 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.61 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.6 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.53 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.47 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.38 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.36 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 99.28 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 99.01 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 97.08 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 94.5 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 87.21 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 87.0 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.6e-31 Score=251.49 Aligned_cols=192 Identities=18% Similarity=0.272 Sum_probs=175.9
Q ss_pred hHHHHHHHhchHHHHhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhhccccccC
Q 006911 300 TVRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRML 379 (626)
Q Consensus 300 ~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~l 379 (626)
|+...+|+++|+.+++||+.+++|++|+.||++||+|.|+. ++.+++++++.||++||.++..+++.++|+++|+|+++
T Consensus 1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 46788999999999999999999999999999999999964 77899999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCc
Q 006911 380 KEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSL 459 (626)
Q Consensus 380 s~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~ 459 (626)
++.++..|+..+++..|.||++|+++|+.++++|||.+|.|+++..++ . ...+++|++||+.+++ .+
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~-~------~~~l~~G~~fGe~~~~---~~--- 146 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-K------EMKLSDGSYFGEICLL---TR--- 146 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CC-C------EEEECTTCEECHHHHH---HC---
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCc-c------eeeeccceeeeeeecc---CC---
Confidence 999999999999999999999999999999999999999999986432 2 2578999999999874 22
Q ss_pred cCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006911 460 FEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT 508 (626)
Q Consensus 460 ~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~ 508 (626)
.+++++++|.++|+++.|++++|.++++++|.+...+.+.+.+|+.
T Consensus 147 ---~~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~RL~ 192 (193)
T d1q3ea_ 147 ---GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLD 192 (193)
T ss_dssp ---SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHT
T ss_pred ---CcccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHcC
Confidence 2788899999999999999999999999999999999888877763
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|