Citrus Sinensis ID: 006927

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-----
MSDSSVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGTDELIKGSDFRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDKCKELAFPEAVLLVNPIEPEFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSHVGPITLAMFLSAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDSDDPKAWLWEDAKQQTLNESESWPYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSDLYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSSSAVAGVMYDYIRFEGPPSSNSNREKKEI
cccccEEEEEEccEEEEEccEEEEEEEccccEEEEEEEccEEEccccccccccccEEEEEEcccccccccccEEEEEccEEEEEEEcccEEEEEEEEEcccccccccccccEEEEEEEEccccEEEEEEEEccccccccccccccEEEEEEccccccccccccEEEEccccccccccEEEEEEEEcccccccEEEEEEEccccEEEEEEccccccccccccEEccccccccEEEEEEEEcEEccccEEEEccccccccEEEcEEEEEEEcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEEccccccccEEEccEEEEEccccccccccccccccEEEEEEcccccEEcccEEEEEEEEEEEEccEEEEEEEEEEEEEEcccEEEcccEEEEEccccccEEEEccccccccccccccccccccccEEEcccccHHccccHHHcccccccccEEEEEccccccccccccEEcccccccccccEEEEEEEEcccccccccEEEEEEEccccccccEEEEcccccccccccccccccccEEEEcEEEEEEEEEEEEEEccccEEEccEEEEEEEEccccccEEEEEEEEEEcccccccccccccc
cccccEEEEEcccEEEEEccEEEEEEEccccEEEEEEEccccccccccccccccccEEEEEcccccccccccccEEcccEEEEEEccccEEEEEEEEccccccccccccEcEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEccccccccccccccEEccccccccccccccccEEEccccccccEEEEEEccccEEEEEEEcccccccccccHHHcHcccccHEHHHHEccccccccccccccccccHHcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEccccccEEEEEcccEEEEEEEccccEEEEccccccEEEEEEEEcccEEEEEEccEEEEEcccEEEcccEEEcccccccEEEEEEccccccccccccccccHHHHHHHcccccHHHHccHHHHHHHHcccccEEEEEcccccccccEEEEEEcccccccccccEEEEEEEcccccccccEEEEEEEEcccccccEEEEcccccccccccccccccccEEEEccEEccEEEEEEEEcHHHHEccccEEEEEEEcccccccEEEEEEEEEEcccccccccccccc
msdssvqlQIQDHHVVMDNGLlqvtiskpdghvtriqGYGIDNMLEVRNKETNRGYWDLVWsetgstgttgtdelikgsdfrvIVENEEQVEISFTRMWDislqdklaplnidkryimlgntsgfYSYAIYEHmgewpafnlpqtRMVFKLRKDKckelafpeavllvnpiepefngevddkyqyscenrnlkvhgwicsdpavgfwqitpsnefrsggplkqnltshvgpITLAMFLSAHYGGEDLVLKlkqdepwkkvlgPVFFYINSfldsdsddpkaWLWEDAKqqtlneseswpysfpasedfpkwnqrgnisgrlqvqdryvsddyitvdgayvglapsgdagswqteckgyqfwtttdadgffsisdilvgdynlyafvpgfigdyrnDVVLTitedsdidmgdlvfepirdgptlweigipsrsaaefyipdpdptyvnklyvnhpdrfrqyglwerysdlypegdlvytvgvsdykndwfyaqvprkkddnsyeATTWQIKFKLDSVDQNATYKLRIALATANVAELQVRvndekaepplfatgqighdnaiaRHGIHGLyrlysmdvpaanlaagenTIFLKQATSSSAVAGVMYDYirfegppssnsnrekkei
msdssvqlQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWsetgstgttgtdelikgsdfrvIVENEEQVEIsftrmwdislqDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDKCKELAFPEavllvnpiepefngEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSHVGPITLAMFLSAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDSDDPKAWLWEDAKQQTLNESESWPYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSDLYPEGDLVYTVGVSDYKNDWFYAQvprkkddnsyEATTWQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLfatgqighdnAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSSSAVAGVMYDYIrfegppssnsnrekkei
MSDSSVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSEtgstgttgtDELIKGSDFRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDKCKELAFPEAVLLVNPIEPEFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSHVGPITLAMFLSAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDSDDPKAWLWEDAKQQTLNESESWPYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSDLYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSSSAVAGVMYDYIRFEGPPSSNSNREKKEI
*********IQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGTDELIKGSDFRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDKCKELAFPEAVLLVNPIEPEFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSHVGPITLAMFLSAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDSDDPKAWLWED*************YSF*****FPKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSDLYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSSSAVAGVMYDYIRF***************
****SVQ*QIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGTDELIKGSDFRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDKCKELAFPEAVLLVNPIEPEFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSHVGPITLAMFLSAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDSDDPKAWLWEDAKQQTLNESESWPYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSDLYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSSSAVAGVMYDYIR****************
********QIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGTDELIKGSDFRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDKCKELAFPEAVLLVNPIEPEFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSHVGPITLAMFLSAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDSDDPKAWLWEDAKQQTLNESESWPYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSDLYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSSSAVAGVMYDYIRFEGP************
****SVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGTDELIKGSDFRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDKCKELAFPEAVLLVNPIEPEFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSHVGPITLAMFLSAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDSDDPKAWLWEDAKQQTLNESESWPYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSDLYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSSSAVAGVMYDYIRFEGPP***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSDSSVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGTDELIKGSDFRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDKCKELAFPEAVLLVNPIEPEFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSHVGPITLAMFLSAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDSDDPKAWLWEDAKQQTLNESESWPYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSDLYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSVDQNATYKLRxxxxxxxxxxxxxxxxxxxxxPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSSSAVAGVMYDYIRFEGPPSSNSNREKKEI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query625 2.2.26 [Sep-21-2011]
Q8RJP2578 Rhamnogalacturonate lyase yes no 0.841 0.910 0.248 1e-31
Q5AZ85660 Rhamnogalacturonate lyase yes no 0.881 0.834 0.246 3e-17
B8N5T6663 Probable rhamnogalacturon N/A no 0.894 0.843 0.228 2e-16
A1D144658 Probable rhamnogalacturon N/A no 0.886 0.841 0.236 2e-14
Q4WR79658 Probable rhamnogalacturon yes no 0.780 0.741 0.234 2e-13
B0XPA2658 Probable rhamnogalacturon N/A no 0.780 0.741 0.234 2e-13
A5ABH4706 Probable rhamnogalacturon yes no 0.604 0.535 0.246 3e-13
Q0C7K7660 Probable rhamnogalacturon N/A no 0.636 0.603 0.237 7e-13
Q2U5P7695 Probable rhamnogalacturon no no 0.870 0.782 0.220 7e-08
Q5B5P1 1041 Probable rhamnogalacturon no no 0.750 0.450 0.207 3e-06
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1 Back     alignment and function desciption
 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 159/640 (24%), Positives = 259/640 (40%), Gaps = 114/640 (17%)

Query: 2   SDSSVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEV----RNKETNRGYW 57
           +  +V+L +   +  +DNGLL+V     DG    +   G + +  +    R+ + NR ++
Sbjct: 25  ATGAVKLTLDGMNSTLDNGLLKVRFGA-DGSAKEVWKGGTNLISRLSGAARDPDKNRSFY 83

Query: 58  DLVWSETGSTGTTGTDELIKGSDFRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYI 117
              +S        G +E +      VI +  +QV +++       + D+   L ++   I
Sbjct: 84  LDYYS-------GGVNEFVP-ERLEVIKQTPDQVHLAY-------IDDQNGKLRLEYHLI 128

Query: 118 MLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKL---RKDKCKELAFPEAVLLVNPIE-- 172
           M  + SG YSY +  + G  P   + + R V++    R D           LL + +E  
Sbjct: 129 MTRDVSGLYSYVVAANTGSAPV-TVSELRNVYRFDATRLDTLFNSIRRGTPLLYDELEQL 187

Query: 173 PEF--------NGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQN 224
           P+         +G V  KY ++   R  +   W       G W +  S E+ SG  LKQ 
Sbjct: 188 PKVQDETWRLPDGSVYSKYDFAGYQRESRY--WGVMGNGYGAWMVPASGEYYSGDALKQE 245

Query: 225 LTSHVGPITLAMFLSAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDSDDPKAWLW 284
           L  H   I L     +H+G  D+V +      ++K+ GP   YIN   D +       L 
Sbjct: 246 LLVHQDAIILNYLTGSHFGTPDMVAQ----PGFEKLYGPWLLYINQGNDRE-------LV 294

Query: 285 EDAKQQTLNESESWPYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAP 344
            D  ++  +E  SWPY +     +P+  QR  +SGRL+             +  +  +  
Sbjct: 295 ADVSRRAEHERASWPYRWLDDARYPR--QRATVSGRLR------------TEAPHATVVL 340

Query: 345 SGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGF--IGDYRNDVVLTIT 402
           +  A ++  +  GY F   T+ DG FS+S++  G+Y L A+  G   IG      V    
Sbjct: 341 NSSAENFDIQTTGYLFSARTNRDGRFSLSNVPPGEYRLSAYADGGTQIGLLAQQTVR--V 398

Query: 403 EDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGL 462
           E     +G +  +  +  P  W IG   R A EF                  D+ RQY  
Sbjct: 399 EGKKTRLGQI--DARQPAPLAWAIGQADRRADEF---------------RFGDKPRQY-- 439

Query: 463 WERYSDLYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSVDQNATY 522
             R+    P  DL + +G S  + DW+YAQ          +  +W I F   + +Q  T 
Sbjct: 440 --RWQTEVP-ADLTFEIGKSRERKDWYYAQT---------QPGSWHILFNTRTPEQPYTL 487

Query: 523 KLRIALAT-------ANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIH-GLYRLYS 574
            + IA A+       A+  +L V++N +     L  T +  +D +I R  +  G Y    
Sbjct: 488 NIAIAAASNNGMTTPASSPQLAVKLNGQ-----LLTTLKYDNDKSIYRGAMQSGRYHEAH 542

Query: 575 MDVPAANLAAGENTIFLKQATSSSAVAGVMYDYIRFEGPP 614
           + +PA  L  G N I L+          VMYD I     P
Sbjct: 543 IPLPAGALQQGGNRITLELLGGM-----VMYDAITLTETP 577
Degrades the rhamnogalacturonan I (RG-I) backbone of pectin. Is required for the full virulence of E.chrysanthemi strain 3937 as it is involved in rotting of plant tissue.
Dickeya dadantii (strain 3937) (taxid: 198628)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB PE=2 SV=2 Back     alignment and function description
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1 Back     alignment and function description
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query625
255572850639 lyase, putative [Ricinus communis] gi|22 0.984 0.962 0.693 0.0
224063367640 predicted protein [Populus trichocarpa] 0.979 0.956 0.686 0.0
356515685643 PREDICTED: probable rhamnogalacturonate 0.988 0.961 0.663 0.0
255572842642 lyase, putative [Ricinus communis] gi|22 0.985 0.959 0.672 0.0
356510088643 PREDICTED: rhamnogalacturonate lyase B-l 0.988 0.961 0.658 0.0
359492972643 PREDICTED: probable rhamnogalacturonate 0.987 0.959 0.675 0.0
449436942642 PREDICTED: rhamnogalacturonate lyase B-l 0.974 0.948 0.673 0.0
302142095656 unnamed protein product [Vitis vinifera] 0.987 0.940 0.660 0.0
449502789635 PREDICTED: LOW QUALITY PROTEIN: rhamnoga 0.971 0.955 0.670 0.0
357466849651 Rhamnogalacturonate lyase [Medicago trun 0.982 0.943 0.649 0.0
>gi|255572850|ref|XP_002527357.1| lyase, putative [Ricinus communis] gi|223533276|gb|EEF35029.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/642 (69%), Positives = 516/642 (80%), Gaps = 27/642 (4%)

Query: 1   MSDSSVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLV 60
           MS   V L I+DHHVV+DNG+LQVT+S P G VT ++   +DN+LEV + E NRGYWDLV
Sbjct: 1   MSTPGVHLHIEDHHVVLDNGILQVTLSNPGGIVTGVRYNNVDNLLEVLDDEVNRGYWDLV 60

Query: 61  WSETGSTGTTGTDELIKGSDFRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLG 120
           WS  GSTGTTGT ++ +G+ FRVIVENE+QVEISFTR WD SL+ KL  LN+DKR+IML 
Sbjct: 61  WSAAGSTGTTGTFDVFEGTSFRVIVENEDQVEISFTRTWDPSLEGKLVSLNLDKRFIMLR 120

Query: 121 NTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDKCKELA-------------------- 160
           N+SGFYSYA++EH+GEWP FNLPQTR+VF+LRKDK   +A                    
Sbjct: 121 NSSGFYSYAVFEHLGEWPPFNLPQTRIVFQLRKDKFHYMAIADNRQRFMPLPDDRLPERG 180

Query: 161 ----FPEAVLLVNPIEPEFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFR 216
               FPEAVLLV+P+EPEF GEVDDKY+YS EN++LKVHGWIC DP +GFWQI PS+EFR
Sbjct: 181 QPLDFPEAVLLVDPVEPEFKGEVDDKYEYSLENKDLKVHGWICFDPPIGFWQINPSSEFR 240

Query: 217 SGGPLKQNLTSHVGPITLAMFLSAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDS 276
           SGGPLKQNLTSHVGP TLAMFLSAHY GEDLVLKL   EPWKKV GPVF Y+NS    D 
Sbjct: 241 SGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLNPGEPWKKVFGPVFMYVNSV--EDK 298

Query: 277 DDPKAWLWEDAKQQTLNESESWPYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVD 336
           DD  + LW DA++Q L E +SWPYSFPASEDFP  +QRG ISG LQ++DRYVS++ I  +
Sbjct: 299 DDALS-LWNDAQEQMLKEVQSWPYSFPASEDFPHSDQRGTISGTLQIRDRYVSNECIPAN 357

Query: 337 GAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRND 396
           GAYVGLAP GD GSWQTECKGYQFWT  DADG+FSIS +  G+YNLYA+VPGFIGDYRND
Sbjct: 358 GAYVGLAPPGDVGSWQTECKGYQFWTNADADGYFSISSVRSGEYNLYAWVPGFIGDYRND 417

Query: 397 VVLTITEDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDR 456
            V+ IT   DI++GDL++EP RDGPTLWEIGIP R+A EFYIPDP+P Y+NKLY+NHPDR
Sbjct: 418 CVIKITAGCDINVGDLLYEPPRDGPTLWEIGIPDRTAGEFYIPDPNPKYINKLYINHPDR 477

Query: 457 FRQYGLWERYSDLYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSV 516
           FRQYGLWERY+DLYP  DLVYTVGVSDYK DWF+AQV RKKDD  Y+ TTWQIKF+LDS+
Sbjct: 478 FRQYGLWERYADLYPNEDLVYTVGVSDYKKDWFFAQVNRKKDDGIYQGTTWQIKFELDSL 537

Query: 517 DQNATYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMD 576
           DQ+ TYKLR+ALATANVAELQVR+ND KA+ P F TG+IGHDN IARHGIHGLYRLYS+D
Sbjct: 538 DQSGTYKLRLALATANVAELQVRINDGKADSPQFTTGEIGHDNTIARHGIHGLYRLYSVD 597

Query: 577 VPAANLAAGENTIFLKQATSSSAVAGVMYDYIRFEGPPSSNS 618
           VP   L  GEN+IFL Q  S+  V G+MYDYIR EGPP+S+S
Sbjct: 598 VPGTQLVEGENSIFLTQTISTGPVQGIMYDYIRLEGPPASDS 639

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224063367|ref|XP_002301114.1| predicted protein [Populus trichocarpa] gi|222842840|gb|EEE80387.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356515685|ref|XP_003526529.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
>gi|255572842|ref|XP_002527353.1| lyase, putative [Ricinus communis] gi|223533272|gb|EEF35025.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356510088|ref|XP_003523772.1| PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
>gi|359492972|ref|XP_002285626.2| PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449436942|ref|XP_004136251.1| PREDICTED: rhamnogalacturonate lyase B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302142095|emb|CBI19298.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449502789|ref|XP_004161743.1| PREDICTED: LOW QUALITY PROTEIN: rhamnogalacturonate lyase B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357466849|ref|XP_003603709.1| Rhamnogalacturonate lyase [Medicago truncatula] gi|355492757|gb|AES73960.1| Rhamnogalacturonate lyase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query625
TAIR|locus:2136007646 AT4G24430 [Arabidopsis thalian 0.729 0.705 0.650 1.6e-226
TAIR|locus:2024331675 AT1G09910 [Arabidopsis thalian 0.737 0.682 0.617 1.8e-216
TAIR|locus:2024427617 AT1G09890 [Arabidopsis thalian 0.731 0.740 0.642 1.3e-215
TAIR|locus:2024417631 AT1G09880 [Arabidopsis thalian 0.729 0.722 0.631 6.7e-197
TAIR|locus:2121090678 AT4G37950 [Arabidopsis thalian 0.729 0.672 0.571 7.8e-170
TAIR|locus:2121095667 AT4G38030 [Arabidopsis thalian 0.729 0.683 0.536 4.9e-168
TAIR|locus:2066040677 AT2G22620 [Arabidopsis thalian 0.963 0.889 0.496 3.8e-156
TAIR|locus:2200390248 AT1G65210 "AT1G65210" [Arabido 0.294 0.741 0.567 4.8e-62
ASPGD|ASPL0000007043660 rglB [Emericella nidulans (tax 0.870 0.824 0.244 1e-16
UNIPROTKB|Q5AZ85660 rglB "Rhamnogalacturonate lyas 0.870 0.824 0.244 1e-16
TAIR|locus:2136007 AT4G24430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1671 (593.3 bits), Expect = 1.6e-226, Sum P(2) = 1.6e-226
 Identities = 300/461 (65%), Positives = 375/461 (81%)

Query:   157 KELAFPEAVLLVNPIEPEFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFR 216
             + LA+PEAVLLV+P+E EF GEVDDKY+YS EN++LKVHGWI  +  +G WQI PSNEFR
Sbjct:   182 RPLAYPEAVLLVHPVEDEFKGEVDDKYEYSSENKDLKVHGWISHNLDLGCWQIIPSNEFR 241

Query:   217 SGGPLKQNLTSHVGPITLAMFLSAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDS 276
             SGG  KQNLTSHVGPI+LAMFLSAHY GED+V+K+K  + WKKV GPVF Y+N   D  S
Sbjct:   242 SGGLSKQNLTSHVGPISLAMFLSAHYAGEDMVMKVKAGDSWKKVFGPVFTYLNCLPDKTS 301

Query:   277 DDPKAWLWEDAKQQTLNESESWPYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVD 336
             D P + LW+DAK Q L E +SWPY FPASEDFP  ++RG ISGRL V D+++SDD++  +
Sbjct:   302 D-PLS-LWQDAKNQMLTEVQSWPYDFPASEDFPVSDKRGCISGRLLVCDKFLSDDFLPAN 359

Query:   337 GAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRND 396
             GA+VGLAP G+ GSWQ E KGYQFWT  D+DG+F+I+DI  G+YNL  +V G+IGDY+ +
Sbjct:   360 GAFVGLAPPGEVGSWQLESKGYQFWTEADSDGYFAINDIREGEYNLNGYVTGWIGDYQYE 419

Query:   397 VVLTITEDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDR 456
              ++ IT   DID+G++V+EP RDGPT+WEIGIP RSAAEF++PDP+P Y+NKLY+ HPDR
Sbjct:   420 QLINITAGCDIDVGNIVYEPPRDGPTVWEIGIPDRSAAEFFVPDPNPKYINKLYIGHPDR 479

Query:   457 FRQYGLWERYSDLYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSV 516
             FRQYGLWERY++LYP+ DLV+T+GVSDYK DWF+A V RK  D++Y+ TTWQIKFKL++V
Sbjct:   480 FRQYGLWERYTELYPKEDLVFTIGVSDYKKDWFFAHVTRKMGDDTYQKTTWQIKFKLENV 539

Query:   517 DQNATYKLRIALATANVAELQVRVNDEKAEP--PLFATGQIGHDNAIARHGIHGLYRLYS 574
              ++ TYK+RIALATANVAELQVR+ND+  E   P+F TG IGHDNAIARHGIHG+YRLY+
Sbjct:   540 QKSCTYKIRIALATANVAELQVRMNDDDTEKTTPIFTTGVIGHDNAIARHGIHGIYRLYN 599

Query:   575 MDVPAANLAAGENTIFLKQA-TSSSAVAGVMYDYIRFEGPP 614
             +DVP+  L  G+NT+FL Q  T++ A  G+MYDYIR EGPP
Sbjct:   600 VDVPSEKLVEGDNTLFLTQTMTTTGAFNGLMYDYIRLEGPP 640
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2024331 AT1G09910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024427 AT1G09890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024417 AT1G09880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121090 AT4G37950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121095 AT4G38030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066040 AT2G22620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200390 AT1G65210 "AT1G65210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007043 rglB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AZ85 rglB "Rhamnogalacturonate lyase B" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query625
pfam06045220 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate ly 8e-72
cd10320265 cd10320, RGL4_N, N-terminal catalytic domain of rh 8e-66
cd10317161 cd10317, RGL4_C, C-terminal domain of rhamnogalact 4e-55
cd1031692 cd10316, RGL4_M, Middle domain of rhamnogalacturon 1e-27
pfam1362081 pfam13620, CarboxypepD_reg, Carboxypeptidase regul 8e-06
>gnl|CDD|218870 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate lyase family Back     alignment and domain information 
 Score =  230 bits (588), Expect = 8e-72
 Identities = 101/203 (49%), Positives = 129/203 (63%), Gaps = 28/203 (13%)

Query: 1   MSDSSVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLV 60
           ++  SV L + D HVV+DNG++QVT+S P G +T I+  GIDN+LE R+KE NRGYWD+V
Sbjct: 22  LNGGSVSLHVDDRHVVVDNGIVQVTLSNPGGAITGIRYNGIDNLLEARDKEKNRGYWDVV 81

Query: 61  WSETGSTGTTGTDELIKGSDFRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLG 120
           W+  G        ++I G++F VI ++EEQVE+SF R W    +D   PLNIDKR IML 
Sbjct: 82  WNFPGVKSIF---DVIVGTEFEVITQDEEQVELSFIRTW-DPSRDNGVPLNIDKRLIMLR 137

Query: 121 NTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDK------------------------C 156
             SGFYSYAI+EH+  WPA NL +TR+VFKL KDK                         
Sbjct: 138 GVSGFYSYAIFEHLSGWPAVNLSETRLVFKLNKDKFHYMAISDDRQRIMPRPDDRDIPRG 197

Query: 157 KELAFPEAVLLVNPIEPEFNGEV 179
             LA+PEAVLLV+P EP+F GEV
Sbjct: 198 APLAYPEAVLLVDPQEPQFRGEV 220

Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. Length = 220
>gnl|CDD|199907 cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199905 cd10317, RGL4_C, C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199904 cd10316, RGL4_M, Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 625
PF06045203 Rhamnogal_lyase: Rhamnogalacturonate lyase family; 100.0
PF09284249 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPr 100.0
PF14683167 CBM-like: Polysaccharide lyase family 4, domain II 100.0
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 99.86
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.69
PF1371588 DUF4480: Domain of unknown function (DUF4480) 98.3
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 97.79
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 97.76
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 97.74
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.5
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 97.35
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 97.35
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 96.98
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 96.11
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 95.3
PRK15036137 hydroxyisourate hydrolase; Provisional 94.78
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 94.65
PF03422125 CBM_6: Carbohydrate binding module (family 6); Int 93.82
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 92.82
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 92.44
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 92.12
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 91.3
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 90.84
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 89.61
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 88.59
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 87.31
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 86.78
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 86.37
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 84.83
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 83.92
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 83.7
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 83.37
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 81.96
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 81.74
PRK103401021 ebgA cryptic beta-D-galactosidase subunit alpha; R 81.44
TIGR02962112 hdxy_isourate hydroxyisourate hydrolase. Members o 81.14
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 80.56
PF10670215 DUF4198: Domain of unknown function (DUF4198) 80.36
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin [] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-50  Score=394.31  Aligned_cols=176  Identities=64%  Similarity=1.066  Sum_probs=170.5

Q ss_pred             CCCCceEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEEcCeecccccccCCCceeeEEEeecCCCCCCCCCceeeecCce
Q 006927            1 MSDSSVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGTDELIKGSD   80 (625)
Q Consensus         1 ~~~~~v~l~~~g~~vvldNg~l~vtv~k~~G~vtsl~y~G~enll~~~~~~~~~gY~d~~w~~~G~~~~~~~~~~~~gt~   80 (625)
                      ++.++|+|++++.+|+||||+|+|||+||+|+||+|+|+|++|||+..+++.++||||++|+.+|   ...+|+++.||+
T Consensus         4 ~~~~~V~L~~~~~~VvldNGiVqVtls~p~G~VtgIkYnGi~NLle~~n~e~nrGYwD~~W~~~G---~~~~~~~~~gt~   80 (203)
T PF06045_consen    4 SSSSGVTLTVQGRQVVLDNGIVQVTLSKPGGIVTGIKYNGIDNLLEVANKENNRGYWDLVWNEPG---SKGKFDRIKGTE   80 (203)
T ss_pred             ccCCCeEEEEcCCEEEEECCEEEEEEcCCCceEEEEEECCEehhhcccCcccCCceEEEecccCC---ccccccccCCcE
Confidence            36789999999999999999999999999999999999999999999999999999999999999   567999999999


Q ss_pred             EEEEEecCCEEEEEEEEeecccccCCccccceeEEEEEeCCcceeEEEEEeeccCCCCCCCCCcceEEEEecccc-----
Q 006927           81 FRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDK-----  155 (625)
Q Consensus        81 ~~vi~~~~~~i~vs~~~~~~~s~~g~~~~l~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~-----  155 (625)
                      |+||++++++|||||+++|+||++++.+||+||+||||++|+||||+|+|++|+++||+++|+|+|+||||++++     
T Consensus        81 f~Vi~~te~qVevSF~r~w~~s~~~~~~plnIDkryVm~rG~SGfY~YAI~e~~~~~Pa~~l~q~R~vfKl~~d~F~yma  160 (203)
T PF06045_consen   81 FSVIEQTEEQVEVSFSRTWDPSLDGKSVPLNIDKRYVMLRGSSGFYSYAIFEHPAGWPAFDLGQTRIVFKLNKDKFHYMA  160 (203)
T ss_pred             EEEEEcCCCeEEEEEEcccCcCCCCCcceeEeeEEEEEecCCceEEEEEEEecCCCCCCcccceeEEEEECCccccceEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999997     


Q ss_pred             -------------------cccccccceeEeeCCCCCCCCcee
Q 006927          156 -------------------CKELAFPEAVLLVNPIEPEFNGEV  179 (625)
Q Consensus       156 -------------------~~~l~~~eav~~~~~~d~~~~G~~  179 (625)
                                         +++|+|||||+|++|+||+++|||
T Consensus       161 i~d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~~~~gev  203 (203)
T PF06045_consen  161 ISDDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINPQFRGEV  203 (203)
T ss_pred             ecccccccCCChHHccccCCCcccCchhhhcCCCCCccccccC
Confidence                               578999999999999999999986

This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets Back     alignment and domain information
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF10670 DUF4198: Domain of unknown function (DUF4198) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query625
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 1e-116
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Length = 508 Back     alignment and structure
 Score =  355 bits (911), Expect = e-116
 Identities = 91/616 (14%), Positives = 172/616 (27%), Gaps = 134/616 (21%)

Query: 11  QDHHVVMDNGL---LQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGST 67
                V+D      L+ T+S+    +T I  YG +     +      G            
Sbjct: 7   SSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQYSSQGSHIGSGL----------- 55

Query: 68  GTTGTDELIKGSDFRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYS 127
                     GS      ++ + ++++                 + +  ++       + 
Sbjct: 56  ----------GSATVTATQSGDYIKVTCV------------TDTLTQYMVVHNGDPIIHM 93

Query: 128 YAIYEHMGEWPAFNLPQTRMVFKLRKDK---------CKELAFPEAVLLVNPIEPEFNGE 178
                        ++ + R + +L  D              A   A+   +        E
Sbjct: 94  ATYITAE-----PSIGELRFIARLNSDLLPNEEPFGDVSTTADGTAIEGSDVFLV--GSE 146

Query: 179 VDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSHVGPITLAMFL 238
              K+  S    + + H    +  A     I    E  SGGP  +++ S+ G    A++ 
Sbjct: 147 TRSKFYSSERFIDDQRHCI--AGDAHRVCMILNQYESSSGGPFHRDINSNNGGSYNALYW 204

Query: 239 SAHYGGEDLVLKLKQDEPWKKVLGPVFFYINSFLDSDSDDPKAWLWEDAKQQTLNESESW 298
             + G          +     + GP   Y +      +    ++                
Sbjct: 205 YMNSGHVQT------ESYRMGLHGPYSMYFSRSGTPSTSIDTSF---------------- 242

Query: 299 PYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGY 358
            ++    + +   + RG ++G                       A S             
Sbjct: 243 -FADLDIKGYVAASGRGKVAGT-------------------ASGADSSMDWVVHWYNDAA 282

Query: 359 QFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDMGDLVFEPIR 418
           Q+WT T + G F+   +  G Y +  +   +          ++T  +       +   ++
Sbjct: 283 QYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATS-----SVTVSAGSTTTKNISGSVK 337

Query: 419 DGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSDLYPEGDLVYT 478
            G T+++IG        F                HP   R          +   G L YT
Sbjct: 338 TGTTIFKIGEWDGQPTGFRNAA-------NQLRMHPSDSR----------MSSWGPLTYT 380

Query: 479 VGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSVDQNATYKLRIALATANV-AELQ 537
           VG S    D+  A                 IKF   S  Q     LRI    +      Q
Sbjct: 381 VGSSALT-DFPMAVF-------KSVNNPVTIKFTATSA-QTGAATLRIGTTLSFAGGRPQ 431

Query: 538 VRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSS 597
             +N      P   T        + R    GL  +Y + +P+  + AG NTI +   + S
Sbjct: 432 ATINSYTGSAPAAPTNLD--SRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGS 489

Query: 598 SA----VAGVMYDYIR 609
           S         ++D + 
Sbjct: 490 SGDTYLSPNFIFDCVE 505
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query625
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 100.0
2nsm_A439 Carboxypeptidase N catalytic chain; caroxypeptidas 97.81
1h8l_A380 Carboxypeptidase GP180 residues 503-882; hydrolase 97.64
3mn8_A435 LP15968P; catalytic domain of alpha/beta-hydrolase 97.54
1uwy_A426 Carboxypeptidase M; metallopeptidase, GPI-anchor, 97.46
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 96.2
1xpn_A170 Hypothetical protein PA1324; B-barrel, structural 96.05
3qec_A150 Putative carbohydrate binding protein; suramin bin 96.04
2w87_A139 Esterase D, XYL-CBM35; plant cell WALL degradation 95.95
2wz8_A156 Cellulosome protein dockerin type I; sugar binding 95.64
2w3j_A145 Carbohydrate binding module; sugar-binding protein 95.25
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 94.98
2vzp_A127 Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS 93.51
2bgo_A140 Endo-B1,4-mannanase 5C; carbohydrate binding prote 93.24
3kcp_A321 Cellulosomal-scaffolding protein A; dockerin, X-mo 92.82
2xsu_A312 Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE 88.68
2azq_A311 Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int 87.49
2boy_A254 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi 87.35
1uxz_A131 Cellulase B; carbohydrate binding module, CBM6, mi 87.11
2y8k_A491 Arabinoxylanase, carbohydrate binding family 6; hy 83.96
3th1_A260 Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy 81.02
2cdp_A160 Beta-agarase 1; carbohydrate-binding module, hydro 80.78
1dmh_A311 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydroc 80.47
3t63_M238 3,4-PCD, protocatechuate 3,4-dioxygenase beta chai 80.42
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Back     alignment and structure
Probab=100.00  E-value=3.6e-124  Score=1031.25  Aligned_cols=485  Identities=20%  Similarity=0.288  Sum_probs=417.3

Q ss_pred             eEEEEeCcEEEEECC---eEEEEEeCCCeeEEEEEEcCeecccccccCCCceeeEEEeecCCCCCCCCCceeeecCceEE
Q 006927            6 VQLQIQDHHVVMDNG---LLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGTDELIKGSDFR   82 (625)
Q Consensus         6 v~l~~~g~~vvldNg---~l~vtv~k~~G~vtsl~y~G~enll~~~~~~~~~gY~d~~w~~~G~~~~~~~~~~~~gt~~~   82 (625)
                      .++++++++||||||   +|+|+|+|++|+||||+|+|+|+|+  .++++|+|      +++|+    ++        ++
T Consensus         2 ~g~t~~~~~~vvd~g~n~~l~~tv~k~~G~itsi~y~G~e~~~--~~~~s~~g------sg~G~----~~--------~~   61 (508)
T 1nkg_A            2 FGITTSSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQY--SSQGSHIG------SGLGS----AT--------VT   61 (508)
T ss_dssp             CEEEECSSEEEEECCCTTCEEEEEETTTCCEEEEEETTEECBC--SSSCBEET------TCCSS----CE--------EE
T ss_pred             ccEEecCCEEEEECCCCCEEEEEEeCCCceEEEEEECCEEccc--cCCCcccc------cCCCc----ce--------EE
Confidence            578999999999655   9999999999999999999999777  48999999      88873    23        33


Q ss_pred             EEEecCCEEEEEEEEeecccccCCccccceeEEEEEeCCcceeEEEEEeeccCCCCCCCCCcceEEEEecccc---cc-c
Q 006927           83 VIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDK---CK-E  158 (625)
Q Consensus        83 vi~~~~~~i~vs~~~~~~~s~~g~~~~l~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~---~~-~  158 (625)
                      ++ +++++|+|||++       +     +||||||||+|++|||||++++     .+++|+|+|+||||++++   .+ .
T Consensus        62 ~~-~~~~~i~vs~~~-------~-----~l~~~~v~~~g~sg~Y~y~~~~-----~~~~lge~R~v~Rl~~~~f~~~~r~  123 (508)
T 1nkg_A           62 AT-QSGDYIKVTCVT-------D-----TLTQYMVVHNGDPIIHMATYIT-----AEPSIGELRFIARLNSDLLPNEEPF  123 (508)
T ss_dssp             EE-EETTEEEEEEEC-------S-----SEEEEEEEETTCCEEEEEEEES-----SCCTTSCEEEEEEECTTTCCEEETT
T ss_pred             EE-ecCCEEEEEEEe-------C-----CceEEEEEeCCCceEEEEEeec-----cCCCCCceEEEEEcChhhCCCcccc
Confidence            33 347999999997       3     8999999999999999999885     368899999999999998   11 0


Q ss_pred             ccccce--eEeeCCCC-CCCCceeeeceeeccccccccEEEEEeCCCceEEEEEcCCCccccCCcceeccccccCc---c
Q 006927          159 LAFPEA--VLLVNPIE-PEFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSHVGP---I  232 (625)
Q Consensus       159 l~~~ea--v~~~~~~d-~~~~G~~~sKY~~s~~~~D~~vhG~~~~g~~vG~W~I~~s~E~~sGGP~kqdL~~h~g~---~  232 (625)
                      .++|+.  -.-+.+.| ++++|+++||||||+++||++||||+  +++||||||+|++||++||||||||++|+||   +
T Consensus       124 ~~~p~~~~~~~v~~~d~~~l~G~~~~KY~~s~~~~D~~vhG~~--~~~vG~w~I~~s~E~~sGGP~kqdL~~h~~~~~~~  201 (508)
T 1nkg_A          124 GDVSTTADGTAIEGSDVFLVGSETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSSGGPFHRDINSNNGGSYNA  201 (508)
T ss_dssp             GGGGCCTTCEEEETTTEEEETTEEEEGGGGCCBGGGCSEEEEE--CSSCEEEEECCCCTTCSSCTTCBCCCEEECSSCEE
T ss_pred             CCCCccccCcEeeeccceeeCCEEccceeccccceecceEEEE--CCCeEEEEEcCCcccccCCCcchhhhccCCcccce
Confidence            112221  01112222 45689999999999999999999999  6999999999999999999999999999999   8


Q ss_pred             EEEEEecccccCccceecccCCCCcc-eeeceEEEEEeCCCCCCCCCccchhHHHHHHhhhhcccCCCCCCCCC---CCC
Q 006927          233 TLAMFLSAHYGGEDLVLKLKQDEPWK-KVLGPVFFYINSFLDSDSDDPKAWLWEDAKQQTLNESESWPYSFPAS---EDF  308 (625)
Q Consensus       233 ~l~~~~s~H~~g~~~~~~~~~ge~w~-kv~GP~~~y~N~g~~~~~~~~~~~lw~Da~~~~~~E~~~WPy~f~~~---~~y  308 (625)
                      +||||+|+|++          +|.++ |||||||||||+|+++       .             ++|||+|+++   ++|
T Consensus       202 ~~~y~~s~H~~----------t~~~~~g~~GP~~~y~n~g~~~-------~-------------~~wpysf~~s~~~~~y  251 (508)
T 1nkg_A          202 LYWYMNSGHVQ----------TESYRMGLHGPYSMYFSRSGTP-------S-------------TSIDTSFFADLDIKGY  251 (508)
T ss_dssp             EEEEEECSTTC----------CSCCCCEEEEEEEEEEESSCCC-------C-------------SCCCCGGGGGTTCTTC
T ss_pred             eeeeEeecccc----------cccccccccccEEEEECCCCCC-------C-------------CCCCCccccccCccCC
Confidence            99999999987          45556 9999999999999864       1             6999999998   999


Q ss_pred             CCCCCceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcc
Q 006927          309 PKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPG  388 (625)
Q Consensus       309 ~~~~qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G  388 (625)
                      ||+++||+|+|+|+  +       .|+....|++        |.  +++|||||+||++|+|+|++||||+|+|+||++|
T Consensus       252 ~~~~~RGtVsG~V~--G-------~~~~~~avv~--------~~--~k~~qywt~td~~G~FtI~~V~pGtY~L~a~~~G  312 (508)
T 1nkg_A          252 VAASGRGKVAGTAS--G-------ADSSMDWVVH--------WY--NDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGE  312 (508)
T ss_dssp             CCGGGCBEEEEEEE--S-------SCTTSCEEEE--------EE--CSSCEEEEECCTTCEEECCCBCSEEEEEEEEETT
T ss_pred             cCcccccEEEEEEc--C-------ccCCceEEEE--------Ec--CCCceeEEEECCCCcEEeCCcCCceEEEEEEECc
Confidence            99999999999975  4       4333333332        32  8999999999999999999999999999999988


Q ss_pred             eeeeeeeeeEEEEeCCCceeccceEEeeCCCCCceEEEeccCCCccceecCCCCCccccceeccCCchhhcccchhhccc
Q 006927          389 FIGDYRNDVVLTITEDSDIDMGDLVFEPIRDGPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSD  468 (625)
Q Consensus       389 ~~G~~~~~~~VtV~aG~t~~l~~l~~~~p~~g~~LweIG~pDrta~eF~~~d~~~~~~n~~~~~~~d~~r~yglW~r~~~  468 (625)
                      +   ...+..|+|+||++++++ |+|+++ ++++|||||+|||+|.||+++|+      .++|| |++||+| +|     
T Consensus       313 ~---~~~~~~VtV~aG~t~~l~-i~~~~~-~g~~iW~IG~pDrta~eF~~~d~------~~~~h-p~~~r~~-~W-----  374 (508)
T 1nkg_A          313 Y---AVATSSVTVSAGSTTTKN-ISGSVK-TGTTIFKIGEWDGQPTGFRNAAN------QLRMH-PSDSRMS-SW-----  374 (508)
T ss_dssp             E---EEEEEEEEECTTCEEECC-EECCCC-CCSEEEEEECSSSSCTTSBTHHH------HTTSC-TTCTTSC-CC-----
T ss_pred             e---EEEEeEEEEcCCCeeEee-eEEecC-CCCeeEEeeCCCCCchhhcCCCc------ccccC-cchhccc-cc-----
Confidence            8   356677999999999997 999975 89999999999999999999982      33566 6789998 87     


Q ss_pred             cCCCCCeEEEeeecCCCCCeeeeeecccCCCCCCcceeEEEEEEecCCCCCCcEEEEEEEecc-cCceEEEEEcCCCCCC
Q 006927          469 LYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSVDQNATYKLRIALATA-NVAELQVRVNDEKAEP  547 (625)
Q Consensus       469 ~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~V~vNg~~~~~  547 (625)
                          +||+||||+|++ +||||||| +.+      .++|+|+|+|+++| .+++||||+||+| +++++||+|||+..+.
T Consensus       375 ----~~l~ytVG~S~~-~Dw~ya~~-~~~------~~~w~I~F~l~~~~-~~~~tLri~la~a~a~~~~qV~VN~~~~~~  441 (508)
T 1nkg_A          375 ----GPLTYTVGSSAL-TDFPMAVF-KSV------NNPVTIKFTATSAQ-TGAATLRIGTTLSFAGGRPQATINSYTGSA  441 (508)
T ss_dssp             ----CSCEEETTTSCG-GGSBSEEE-TTT------TCCEEEEEEECGGG-CSCEEEEEEEEEEETTCEEEEEETTEECCC
T ss_pred             ----CCeEEEeCcCch-hcCCeEEE-CCC------CCcEEEEEEcCccc-CCceEEEEEehhhccCCCeEEEECCcCCcC
Confidence                469999999999 79999999 332      26799999999988 5799999999998 6899999999987765


Q ss_pred             CCcccccccCCCceeceeeeeeeEEEEEEeecCCeeeeecEEEEEEecCCC--CC--ceEEEEEEEEec
Q 006927          548 PLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSSS--AV--AGVMYDYIRFEG  612 (625)
Q Consensus       548 p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~g~s--~~--~~vmyD~IrLe~  612 (625)
                      |  .++.+++||||+||++||+|++++|+||+++|++|+|+|+|+++++++  +|  ++|||||||||.
T Consensus       442 ~--~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~lt~~~~s~~~~fls~~vmyD~I~L~~  508 (508)
T 1nkg_A          442 P--AAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSSGDTYLSPNFIFDCVELFQ  508 (508)
T ss_dssp             C--CCCCCCCSCCGGGTCCCSCCCEEEEEECTTSSCSEEEEEEEEEECSCCCSGGGSSEEEEEEEEEEC
T ss_pred             c--cccccCCCCeEEecceeeeeEEEEEEEcHHHeecCceEEEEEeccCCCCCccccccEEEEEEEecC
Confidence            4  566799999999999999999999999999999999999999999986  67  699999999984
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Back     alignment and structure
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Back     alignment and structure
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1 Back     alignment and structure
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa} Back     alignment and structure
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A Back     alignment and structure
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum} Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A* Back     alignment and structure
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B Back     alignment and structure
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A* Back     alignment and structure
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida} Back     alignment and structure
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus} Back     alignment and structure
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A* Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida} Back     alignment and structure
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A* Back     alignment and structure
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A* Back     alignment and structure
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 625
d1nkga2171 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, 2e-57
d1nkga187 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, m 0.002
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Rhamnogalacturonase B, RhgB, C-terminal domain
domain: Rhamnogalacturonase B, RhgB, C-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  189 bits (481), Expect = 2e-57
 Identities = 44/195 (22%), Positives = 61/195 (31%), Gaps = 33/195 (16%)

Query: 420 GPTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSDLYPEGDLVYTV 479
           G T+++IG        F                HP   R              G L YTV
Sbjct: 2   GTTIFKIGEWDGQPTGFRNAA-------NQLRMHPSDSRMSSW----------GPLTYTV 44

Query: 480 GVSDYKNDWFYAQVPRKKDDNSYEATTWQIKFKLDSVDQNATYKLRIALATANV-AELQV 538
           G S    D+  A     K  N        IKF   S  Q     LRI    +      Q 
Sbjct: 45  GSSALT-DFPMAVF---KSVN----NPVTIKFTATS-AQTGAATLRIGTTLSFAGGRPQA 95

Query: 539 RVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSSS 598
            +N      P   T        + R    GL  +Y + +P+  + AG NTI +   + SS
Sbjct: 96  TINSYTGSAPAAPT--NLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSS 153

Query: 599 A----VAGVMYDYIR 609
                    ++D + 
Sbjct: 154 GDTYLSPNFIFDCVE 168
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Length = 87 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query625
d1nkga3250 Rhamnogalacturonase B, RhgB, N-terminal domain {As 100.0
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 100.0
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 99.44
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 98.44
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 98.18
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 97.66
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 96.02
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 92.72
d1w9sa_134 Hypothetical protein BH0236 {Bacillus halodurans [ 92.28
d2b59b296 Cellulosomal scaffolding protein A {Clostridium th 92.05
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 90.66
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 88.81
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 88.24
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 88.08
d1od3a_132 Putative xylanase {Clostridium stercorarium [TaxId 86.61
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 86.49
d1uxxx_125 Carbohydrate binding module from xylanase U {Clost 86.04
d1jz8a4293 beta-Galactosidase, domain 5 {Escherichia coli [Ta 84.81
d1uxza_131 Cellulase B (lichenase 5a) {Cellvibrio mixtus [Tax 83.34
d1cwva194 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 82.35
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Rhamnogalacturonase B, RhgB, N-terminal domain
domain: Rhamnogalacturonase B, RhgB, N-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.6e-47  Score=372.69  Aligned_cols=223  Identities=19%  Similarity=0.239  Sum_probs=193.5

Q ss_pred             eEEEEeCcEEEEECCe---EEEEEeCCCeeEEEEEEcCeecccccccCCCceeeEEEeecCCCCCCCCCceeeecCceEE
Q 006927            6 VQLQIQDHHVVMDNGL---LQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGTDELIKGSDFR   82 (625)
Q Consensus         6 v~l~~~g~~vvldNg~---l~vtv~k~~G~vtsl~y~G~enll~~~~~~~~~gY~d~~w~~~G~~~~~~~~~~~~gt~~~   82 (625)
                      .+++++|+.++||.|.   |.|+|++++|||+||+|+|+| |+ +.++.+|++      ||+|             ++..
T Consensus         2 FG~T~sg~~yvVDtga~~~LvF~V~~s~gDitSi~Y~g~E-~Q-~~~k~ShI~------SGLG-------------satV   60 (250)
T d1nkga3           2 FGITTSSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTE-LQ-YSSQGSHIG------SGLG-------------SATV   60 (250)
T ss_dssp             CEEEECSSEEEEECCCTTCEEEEEETTTCCEEEEEETTEE-CB-CSSSCBEET------TCCS-------------SCEE
T ss_pred             cceEecCCcEEEeCCCCcceEEEEecCCCceEEEEECCEE-ee-ccCccceec------cCcc-------------ceeE
Confidence            5789999999999665   999999999999999999998 54 558999999      8888             3445


Q ss_pred             EEEecCCEEEEEEEEeecccccCCccccceeEEEEEeCCcceeEEEEEeeccCCCCCCCCCcceEEEEecccc-cccccc
Q 006927           83 VIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDK-CKELAF  161 (625)
Q Consensus        83 vi~~~~~~i~vs~~~~~~~s~~g~~~~l~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~-~~~l~~  161 (625)
                      .+++..++|.|+|..       +     +|.||||+|+|++.|||++-.   +  ++++|||+|+|+||+.++ .+..++
T Consensus        61 s~~~~~~yIkVT~~~-------~-----tLthYyv~r~G~~~IymaT~~---~--aepsvGelRfIaRL~~~~lPn~~p~  123 (250)
T d1nkga3          61 TATQSGDYIKVTCVT-------D-----TLTQYMVVHNGDPIIHMATYI---T--AEPSIGELRFIARLNSDLLPNEEPF  123 (250)
T ss_dssp             EEEEETTEEEEEEEC-------S-----SEEEEEEEETTCCEEEEEEEE---S--SCCTTSCEEEEEEECTTTCCEEETT
T ss_pred             EeeccCCEEEEEEEe-------c-----CcEEEEEeecCCceEEEEecc---C--CCCCccceeEEEecccccCCCCCCC
Confidence            556677999999997       3     799999999999999999933   3  578899999999999987 221111


Q ss_pred             -------------cceeEeeCCCCCCCCceeeeceeeccccccccEEEEEeCCCceEEEEEcCCCccccCCcceeccccc
Q 006927          162 -------------PEAVLLVNPIEPEFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSH  228 (625)
Q Consensus       162 -------------~eav~~~~~~d~~~~G~~~sKY~~s~~~~D~~vhG~~~~g~~vG~W~I~~s~E~~sGGP~kqdL~~h  228 (625)
                                   ...|+++       +|+++||||.|.+++|+++|||+  |+.+++|||++++|.+|||||+|||++|
T Consensus       124 ~dvs~t~~~taIEgsDVF~v-------dG~TrSKfYSs~R~IDd~~~~vs--g~~v~v~mi~~~~E~SSGGPFfRdI~~n  194 (250)
T d1nkga3         124 GDVSTTADGTAIEGSDVFLV-------GSETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSSGGPFHRDINSN  194 (250)
T ss_dssp             GGGGCCTTCEEEETTTEEEE-------TTEEEEGGGGCCBGGGCSEEEEE--CSSCEEEEECCCCTTCSSCTTCBCCCEE
T ss_pred             ccccccCCCcEEecccEEeE-------CCEEehhhccccceecccEEEEe--cCCeEEEEEeCCccccCCCCcchhhhhc
Confidence                         1225555       79999999999999999999998  9999999999999999999999999999


Q ss_pred             cCcc---EEEEEecccccCccceecccCCCCcc-eeeceEEEEEeCCCCCCCCCccchhHHHH
Q 006927          229 VGPI---TLAMFLSAHYGGEDLVLKLKQDEPWK-KVLGPVFFYINSFLDSDSDDPKAWLWEDA  287 (625)
Q Consensus       229 ~g~~---~l~~~~s~H~~g~~~~~~~~~ge~w~-kv~GP~~~y~N~g~~~~~~~~~~~lw~Da  287 (625)
                      .++.   ||+||+|+|.|          +|+|| +|||||.|+|++++. |+.+++ ..|+|.
T Consensus       195 ~~~~~~~Ly~ymnsgH~Q----------TE~~R~GlhGPY~l~Ft~~g~-Ps~~lD-tsff~~  245 (250)
T d1nkga3         195 NGGSYNALYWYMNSGHVQ----------TESYRMGLHGPYSMYFSRSGT-PSTSID-TSFFAD  245 (250)
T ss_dssp             ECSSCEEEEEEEECSTTC----------CSCCCCEEEEEEEEEEESSCC-CCSCCC-CGGGGG
T ss_pred             CCCCccceeEEeecCccc----------chhhhcccCCceEEEEcCCCC-CCCccc-hhhhhh
Confidence            9765   99999999998          89999 999999999999886 555666 999987
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1jz8a4 b.30.5.1 (A:731-1023) beta-Galactosidase, domain 5 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxza_ b.18.1.10 (A:) Cellulase B (lichenase 5a) {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure