Citrus Sinensis ID: 006936

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-----

MPGGCSIRALWILNNFDAVVFSRRFPVVERRWREACKTENESCIEDPIKYNVLPLVPTDSELASAFAERKRREGSVRGFGVRVSQSTEGSDSWVDDPITRHVIGLYIDTEEGGENHLLWPLILHVKGPYCILVLPQVEPRHLKAYARLCKKSDCGNAVGVDDSLSSLLLDLPSITGAFMVAHAIGDIITGDVVEPEVVVSASPSVGGLLDSLTGSIGISGISSRAKPVAAPVASTAPSGAAAVGTVASDAPKLGSRPLEKDALRSFISSAMPFGTPVDLSYSNIFAIKVNGFPSSELPPQDLKQPAWKPYLYKGKQRLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLNSAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNNEHSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNVVNIEEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAVKAPVEFSAQVTSGDYILWNTLGKCPSVATAKT

cccccEEEEEEEEEccccEEEEEccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEcccccccccccccccccEEEEEEEcccccccccEEEEEEEEEccEEEEEEcccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEcccccccccccccccEEEEEcccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEcccccEEEEcccccccccccccccccEEcccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEEEccEEEEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEEEEEEEEccccEEEEEEccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccEEccccEEEEEEEEccEEEEcEEEEcccEEEcccccccEEEEEEEEEEcEEEEcccccccccccccc

ccccccEEEEEEEccccEEEEccccHHHHHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEEEEcccccccccEEEEEEEEEcccEEEEEEccccHHHHHHHHHHHccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHcccccccEEEEEcccccHcHHHcccccEEEcccccccccccccccccccccccHcccccccccccccccccHHHHHHHHHHcccccccccccccccEEEccccccccccccccccccccccccEccccEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEEEcccccEEEEccccccccccccEEccEEEEEccccccEEEEEEcccccEEEEEEEccccccccEEEEEEEEEEcccEEEEEEEEEEEcccccccEEEEEEEEEEccccccccccEEcccccEcccccEEEEEEcccccccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHcccccccccccccEEccccEEEEEEEEEccccEccEEEcccEEEEEccccccEEEEEEEEcccEEEEcccccccccccccc

MPGGCSIRALWILNNFDAVVFSRRFPVVERRWREACKTEnesciedpikynvlplvptdsELASAFAERKRregsvrgfgvrvsqstegsdswvddpitrHVIGlyidteeggenhllwplilhvkgpycilvlpqveprHLKAYARLCkksdcgnavgvddSLSSLlldlpsitGAFMVAHAIgdiitgdvvepevvvsaspsvgglldsltgsigisgissrakpvaapvastapsgaaavgtvasdapklgsrplekDALRSFIssampfgtpvdlsysNIFAIkvngfpsselppqdlkqpawkpylykgkQRLLFTIHETVHaamydrdeipdslsvsgqincraelegmpdvsfpltglnsAHVEvlsfhpsaqvpeqgvdkqavmfspplgnFVLMRYQAIcglgppvkgfyQLSMVSEDEGAFLFKLCLMesykapltmefcnvtmlfprrrvvsfdgtpsigtvsnneHSVEWKIMTsgraltgrsleatfpgtvkfapwqtqrsssggtvdedsdietdntnnVVNIEEFLMEKmnmdlppvdleepfcwqAYNYAKVSFKIIGasisgmsidpksvsiypavkapvefsaqvtsgDYILwntlgkcpsvatakt

MPGGCSIRAlwilnnfdavvfsrrfpvVERRWREACKtenesciedpikynVLPLVPTDSELASAFAerkrregsvrgfgvrvsqstegsdswvddpiTRHVIGLYIDTEEGGENHLLWPLILHVKGPYCILVLPQVEPRHLKAYARLCKKSDCGNAVGVDDSLSSLLLDLPSITGAFMVAHAIGDIITGDVVEPEVVVSASPSVGGLLDSLTGSIGISGISSRAKPVAAPVASTAPSGAAAVGTvasdapklgsrpLEKDALRSFISSAMPFGTPVDLSYSNIFAIKVNGFPSSELPPQDLKQPAWKPYLYKGKQRLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLNSAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFdgtpsigtvsnnehsvEWKIMTSGRALTGRSLEAtfpgtvkfapwqtqrsssggtvdedsdietdntnnVVNIEEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAVKAPVEFSAQVTSGDYILwntlgkcpsvatakt

MPGGCSIRALWILNNFDAVVFSRRFPVVERRWREACKTENESCIEDPIKYNVLPLVPTDSELASAFAERKRREGSVRGFGVRVSQSTEGSDSWVDDPITRHVIGLYIDTEEGGENHLLWPLILHVKGPYCILVLPQVEPRHLKAYARLCKKSDCGNAVGVddslssllldlPSITGAFMVAHAIGDIITGDvvepevvvsaspsvgglldsltgsigisgissRAKpvaapvastapsgaaavgtvasdapKLGSRPLEKDALRSFISSAMPFGTPVDLSYSNIFAIKVNGFPSSELPPQDLKQPAWKPYLYKGKQRLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLNSAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNNEHSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNVVNIEEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAVKAPVEFSAQVTSGDYILWNTLGKCPSVATAKT

****CSIRALWILNNFDAVVFSRRFPVVERRWREACKTENESCIEDPIKYNVLPLVPT*********************************SWVDDPITRHVIGLYIDTEEGGENHLLWPLILHVKGPYCILVLPQVEPRHLKAYARLCKKSDCGNAVGVDDSLSSLLLDLPSITGAFMVAHAIGDIITGDVVEPEVVVSASPSVGGLLDSLTGSIGIS**********************************************FISSAMPFGTPVDLSYSNIFAIKVNGFP**********QPAWKPYLYKGKQRLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLNSAHVEVLSFHP*******GVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNNEHSVEWKIMTSGRALTGRSLEATFPGTVKFAP*************************VVNIEEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAVKAPVEFSAQVTSGDYILWNTLGKCP*******

*****SI*ALWILNNFDAVVFSRRFPVVERRWRE***************YNVLPLVPTDSELASAFAERK**********V*VSQSTEGSDSWVDDPITRHVIGLYIDTEEGGENHLLWPLILHVKGPYCILVLPQVEPRHLKAY****************DSLSSLLLDLPSITGAFMVAHAIGDIITGDVVEPEVVVSASPSVGGLLDSLTGSIGISGISSRAKPVAAPVASTAPSGAAAVGTVASDAPKLGSRPLEKDALRSFISSAMPFGTPVDLSY*************************WKPYLYKGKQRLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLNSAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLSM*******FLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNNEHSVEWKIMTSG*****************************************************************LEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAVKAPVEFSAQVTSGDYILWNTLGKCPS******

MPGGCSIRALWILNNFDAVVFSRRFPVVERRWREACKTENESCIEDPIKYNVLPLVPTDSELASAF*************************SWVDDPITRHVIGLYIDTEEGGENHLLWPLILHVKGPYCILVLPQVEPRHLKAYARLCKKSDCGNAVGVDDSLSSLLLDLPSITGAFMVAHAIGDIITGDVVEPEVVVSASPSVGGLLDSLTGSIGISGIS***********************VASDAPKLGSRPLEKDALRSFISSAMPFGTPVDLSYSNIFAIKVNGFPSSELPPQDLKQPAWKPYLYKGKQRLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLNSAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNNEHSVEWKIMTSGRALTGRSLEATFPGTVKFAPW****************IETDNTNNVVNIEEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAVKAPVEFSAQVTSGDYILWNTLGKCPSVATAKT

***GCSIRALWILNNFDAVVFSRRFPVVERRWREACKTENESCIEDPIKYNVLPLVPTDSELASAFAERKRREGSVRGFGVRVSQSTEGSDSWVDDPITRHVIGLYIDTEEGGENHLLWPLILHVKGPYCILVLPQVEPRHLKAYARLCKKSDCGNAVG*DDSLSSLLLDLPSITGAFMVAHAIGDIITGDVVEPEVVVSASPSVGGLLDSLTGSIGISGISSRAKPVAAPVAS********V*TVASDAPKLGSRPLEKDALRSFISSAMPFGTPVDLSYSNIFAIKVNGFPSSELPPQDLKQPAWKPYLYKGKQRLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLNSAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNNEHSVEWKIMTSGRALTGRSLEATFPGTVKFAPW***********************NVVNIEEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAVKAPVEFSAQVTSGDYILWNTLGKCPS******

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		625	2.2.26 [Sep-21-2011]
Q9H0R1		490	AP-5 complex subunit mu-1	yes	no	0.486	0.620	0.263	5e-19
Q4R6Q7		490	AP-5 complex subunit mu-1	N/A	no	0.486	0.620	0.263	1e-18
Q5E9X5		490	AP-5 complex subunit mu-1	yes	no	0.472	0.602	0.258	5e-18
Q499N2		490	AP-5 complex subunit mu-1	yes	no	0.481	0.614	0.253	2e-14
Q8BJ63		490	AP-5 complex subunit mu-1	yes	no	0.476	0.608	0.246	9e-14

>sp\|Q9H0R1\|AP5M1_HUMAN AP-5 complex subunit mu-1 OS=Homo sapiens GN=AP5M1 PE=1 SV=2	Back alignment and function desciption

 Score = 96.7 bits (239), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 154/376 (40%), Gaps = 72/376 (19%)

Query: 263 LRSFISSAMPFGTPVDLSYSNIFAIKVNGFPSSELPPQDLKQPAWKPYLYKGKQRLLFTI 322
           L   +  A PFGT +D +  N  ++    F S   P    KQPAWK   YKGK ++  +I
Sbjct: 159 LPDLLLQACPFGTLLDANLQN--SLDNTNFASVTQPQ---KQPAWKTGTYKGKPQVSISI 213

Query: 323 HETVHAAMYDRDEIPDSLSVSGQINCRAELEG-MPDVSFPLT-GLNSAHVEVLSFHP--- 377
            E V +  YD+  I D+  V G + C+ +LEG MP+V+  L+   N + ++ +  HP   
Sbjct: 214 TEKVKSMQYDKQGIADTWQVVGTVTCKCDLEGIMPNVTISLSLPTNGSPLQDILVHPCVT 273

Query: 378 ---SAQVPEQGVDKQ---------AVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVS 425
              SA +    +D              F+PPL +F L  Y +   + PP+ GFYQ+    
Sbjct: 274 SLDSAILTSSSIDAMDDSAFSGPYKFPFTPPLESFNLCFYTSQVPV-PPILGFYQMKE-E 331

Query: 426 EDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRR-VVSFDGTPSIGT--VSNNEHSVEW 482
           E +      L L ES K     EFC   + F  R  +   +   S G   V   +  + W
Sbjct: 332 EVQLRITINLKLHESVKN--NFEFCEAHIPFYNRGPITHLEYKTSFGQLEVFREKSLLIW 389

Query: 483 KIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNVVNIEEFLM 542
            I   G+    +S+E +  GTV F     ++                             
Sbjct: 390 II---GQKFP-KSMEISLSGTVTFGAKSHEKQ---------------------------- 417

Query: 543 EKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAVKAPVEFSAQ 602
                   P D   P C     Y K+ F+I+  +++G   D  SV ++ + K  +    +
Sbjct: 418 --------PFD---PICTGETAYLKLHFRILDYTLTGCYADQHSVQVFASGKPKISAHRK 466

Query: 603 VTSGDYILWNTLGKCP 618
           + S DY +WN+    P
Sbjct: 467 LISSDYYIWNSKAPAP 482

As part of AP-5, a probable fifth adapter protein complex it may be involved in endosomal transport. According to PubMed:18395520, it may play a role in cell death.
Homo sapiens (taxid: 9606)

>sp\|Q4R6Q7\|AP5M1_MACFA AP-5 complex subunit mu-1 OS=Macaca fascicularis GN=AP5M1 PE=2 SV=1	Back alignment and function description

>sp\|Q5E9X5\|AP5M1_BOVIN AP-5 complex subunit mu-1 OS=Bos taurus GN=AP5M1 PE=2 SV=1	Back alignment and function description

>sp\|Q499N2\|AP5M1_RAT AP-5 complex subunit mu-1 OS=Rattus norvegicus GN=Ap5m1 PE=2 SV=1	Back alignment and function description

>sp\|Q8BJ63\|AP5M1_MOUSE AP-5 complex subunit mu-1 OS=Mus musculus GN=Ap5m1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		625
225432476		627	PREDICTED: uncharacterized protein LOC10	0.995	0.992	0.819	0.0
255551541		632	conserved hypothetical protein [Ricinus	0.996	0.985	0.778	0.0
449454440		625	PREDICTED: uncharacterized protein LOC10	0.987	0.987	0.752	0.0
356563682		627	PREDICTED: MHD domain-containing death-i	0.982	0.979	0.755	0.0
297836844		613	hypothetical protein ARALYDRAFT_900447 [	0.966	0.985	0.692	0.0
30681135		613	clathrin adaptor complexes medium subuni	0.972	0.991	0.706	0.0
218186979		619	hypothetical protein OsI_38560 [Oryza sa	0.976	0.985	0.628	0.0
326499624		621	predicted protein [Hordeum vulgare subsp	0.976	0.982	0.619	0.0
108862759		619	Adaptor complexes medium subunit family	0.976	0.985	0.627	0.0
357151771		621	PREDICTED: MHD domain-containing death-i	0.976	0.982	0.624	0.0

>gi\|225432476\|ref\|XP_002279067.1\| PREDICTED: uncharacterized protein LOC100259662 [Vitis vinifera] gi\|297736956\|emb\|CBI26157.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1077 bits (2784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/625 (81%), Positives = 561/625 (89%), Gaps = 3/625 (0%)

Query: 3   GGCSIRALWILNNFDAVVFSRRFPVVERRWREACKTENESCIEDPIKYNVLPLVPTDSEL 62
            GCSIRALWILNNFD+VVFSRRFPVVER+WR ACK ENE+   D + Y V PL+PTDSEL
Sbjct: 2   AGCSIRALWILNNFDSVVFSRRFPVVERQWRTACKAENENSSNDNLNYTVYPLLPTDSEL 61

Query: 63  ASAFAERKRREGSVRGFGVRVSQSTEGSDSWVDDPITRHVIGLYIDTEEGGENHLLWPLI 122
           A+AF ERK+REGS RGFG+RV+QS EGSDSWVDDPITRH+I L+I+ +E  EN++LWPLI
Sbjct: 62  AAAFVERKKREGSARGFGIRVTQSAEGSDSWVDDPITRHIISLFINKDEERENNMLWPLI 121

Query: 123 LHVKGPYCILVLPQVEPRHLKAYARLCKKSDCGNAVGVDDSLSSLLLDLPSITGAFMVAH 182
           LH+KG YCILVLP VEP+HLKAYA +C++SDCGNA+GV  SLSSLL DLPSITGA MVAH
Sbjct: 122 LHMKGHYCILVLPLVEPQHLKAYAGVCRRSDCGNAIGVPGSLSSLLFDLPSITGACMVAH 181

Query: 183 AIGDIITGDVVEPEVVVSASPSVGGLLDSLTGSIGISGISSRAKPVAAPVASTAPSGAAA 242
           AIGD+ITGDVVEPEVVVSASPSVGGLLDSLTGSIGISGIS+R KPVAAPVA++  S  A 
Sbjct: 182 AIGDVITGDVVEPEVVVSASPSVGGLLDSLTGSIGISGISTRTKPVAAPVAASTTSSTAV 241

Query: 243 VGTVASDAPKLGSRPLEKDALRSFISSAMPFGTPVDLSYSNIFAIKVNGFPSSELPPQDL 302
           +G V SDAPK GSRPL+KDALR+FI+S+MPFGTP+DLSYSNIFAIKVNGF SS+LP  DL
Sbjct: 242 IGAVTSDAPKFGSRPLDKDALRTFINSSMPFGTPLDLSYSNIFAIKVNGFSSSDLPLPDL 301

Query: 303 KQPAWKPYLYKGKQRLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPL 362
           KQPAWKPYLYKGKQR+LFTIHETVHAAMYDRDEIPDS+S+SGQ+NCRAELEG+PDVSFPL
Sbjct: 302 KQPAWKPYLYKGKQRMLFTIHETVHAAMYDRDEIPDSISISGQVNCRAELEGLPDVSFPL 361

Query: 363 TGLNSAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLS 422
           TGLN A +EVLSFHP AQVPEQGVDKQAVMFSPPLGNFVLM YQA CGLGPPVKGFYQLS
Sbjct: 362 TGLNKAGIEVLSFHPCAQVPEQGVDKQAVMFSPPLGNFVLMHYQAFCGLGPPVKGFYQLS 421

Query: 423 MVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNNEHSVEW 482
           MVSEDEGAFLFKLCLME YKAPLTMEFC VTM FPRRRVVSFDGTPSIGTVS  EH VEW
Sbjct: 422 MVSEDEGAFLFKLCLMEGYKAPLTMEFCTVTMPFPRRRVVSFDGTPSIGTVSTTEHLVEW 481

Query: 483 KIMTSGRALTGRSLEATFPGTVKFAPWQTQR---SSSGGTVDEDSDIETDNTNNVVNIEE 539
           KI+T GR LTGRS+EATFPGT+KFAPWQ QR   S S    DEDSD ETD+TNN+VN+EE
Sbjct: 482 KIITGGRGLTGRSIEATFPGTIKFAPWQIQRLPSSRSFLGADEDSDFETDSTNNMVNVEE 541

Query: 540 FLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAVKAPVEF 599
           FLMEKM+ DLPP DLEEPFCWQAYNYAKV+FKI+GAS+SGMSIDPKSVSIYPAVKAPVEF
Sbjct: 542 FLMEKMSKDLPPADLEEPFCWQAYNYAKVTFKIVGASLSGMSIDPKSVSIYPAVKAPVEF 601

Query: 600 SAQVTSGDYILWNTLGKCPSVATAK 624
           S+QVTSGDYILWNTLGKCP  AT K
Sbjct: 602 SSQVTSGDYILWNTLGKCPFAATVK 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255551541\|ref\|XP_002516816.1\| conserved hypothetical protein [Ricinus communis] gi\|223543904\|gb\|EEF45430.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|449454440\|ref\|XP_004144963.1\| PREDICTED: uncharacterized protein LOC101216895 [Cucumis sativus] gi\|449472289\|ref\|XP_004153548.1\| PREDICTED: uncharacterized protein LOC101206253 [Cucumis sativus] gi\|449525381\|ref\|XP_004169696.1\| PREDICTED: uncharacterized LOC101216895 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356563682\|ref\|XP_003550090.1\| PREDICTED: MHD domain-containing death-inducing protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|297836844\|ref\|XP_002886304.1\| hypothetical protein ARALYDRAFT_900447 [Arabidopsis lyrata subsp. lyrata] gi\|297332144\|gb\|EFH62563.1\| hypothetical protein ARALYDRAFT_900447 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30681135\|ref\|NP_850004.1\| clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana] gi\|18087614\|gb\|AAL58937.1\|AF462850_1 At2g20790/F5H14.24 [Arabidopsis thaliana] gi\|19699154\|gb\|AAL90943.1\| At2g20790/F5H14.24 [Arabidopsis thaliana] gi\|330251979\|gb\|AEC07073.1\| clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|218186979\|gb\|EEC69406.1\| hypothetical protein OsI_38560 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|326499624\|dbj\|BAJ86123.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|108862759\|gb\|ABA99308.2\| Adaptor complexes medium subunit family protein, expressed [Oryza sativa Japonica Group] gi\|125579559\|gb\|EAZ20705.1\| hypothetical protein OsJ_36325 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|357151771\|ref\|XP_003575898.1\| PREDICTED: MHD domain-containing death-inducing protein-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		625
TAIR\|locus:2051436		613	AT2G20790 [Arabidopsis thalian	0.972	0.991	0.628	2.4e-211
DICTYBASE\|DDB_G0285113		585	DDB_G0285113 "MHD domain-conta	0.395	0.422	0.325	2.1e-34
UNIPROTKB\|E1BXF7		484	MUDENG "Uncharacterized protei	0.366	0.473	0.299	2.7e-22
UNIPROTKB\|Q4R6Q7		490	AP5M1 "AP-5 complex subunit mu	0.369	0.471	0.306	2.7e-20
UNIPROTKB\|Q9H0R1		490	AP5M1 "AP-5 complex subunit mu	0.369	0.471	0.303	6.6e-20
UNIPROTKB\|Q5E9X5		490	AP5M1 "AP-5 complex subunit mu	0.369	0.471	0.291	2.1e-19
UNIPROTKB\|F1SSM1		490	AP5M1 "Uncharacterized protein	0.364	0.465	0.310	2.2e-19
UNIPROTKB\|E2RAC5		491	AP5M1 "Uncharacterized protein	0.369	0.470	0.306	2.7e-19
UNIPROTKB\|E7EQ45		504	AP5M1 "AP-5 complex subunit mu	0.369	0.458	0.303	3.5e-18
MGI\|MGI:1921635		490	Ap5m1 "adaptor-related protein	0.174	0.222	0.355	3.2e-17

TAIR\|locus:2051436 AT2G20790 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2043 (724.2 bits), Expect = 2.4e-211, P = 2.4e-211
 Identities = 392/624 (62%), Positives = 466/624 (74%)

Query:     1 MPGGCSIRALWILNNFDAVVFSRRFPVVERRWREACKTENESCIEDPIKYNVLPLVPTDS 60
             MP GCSIRALWI+NN D VVFSRRFPVVE++W  A KTENE+   D      LP +PTD 
Sbjct:     1 MPSGCSIRALWIINNQDTVVFSRRFPVVEKQWCSAYKTENENTGLD------LPRLPTDQ 54

Query:    61 ELASAFAERKRREGSVRGFGVRVSQSTEGSDSWVDDPITRHVIGLYI---DTEEGGENHL 117
             +++ +F  RKRREGS RG+G+RV+QST+GSDSWVDDPITRH+I L +   D ++  E ++
Sbjct:    55 QISDSFTRRKRREGSTRGYGIRVAQSTKGSDSWVDDPITRHIISLCLTEEDDDDDDERNI 114

Query:   118 LWPLILHVKGPYCILVLPQVEPRHLKAYARLCKKSDCGNAVGVXXXXXXXXXXXPSITGA 177
             LWP+ LH K  Y ILVLP VEP+ +K Y +LC++SDCG AVG             SITGA
Sbjct:   115 LWPIALHTKALYSILVLPLVEPKEMKDYVKLCRRSDCGPAVGEDLSLSSLLLNISSITGA 174

Query:   178 FMVAHAIGDIITGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKXXXXXXXXXXX 237
             FMVAHA GDII+GD                                RAK           
Sbjct:   175 FMVAHAFGDIISGDTVEPEVVVSVSPSVGGLFDSLTGSIGISS---RAKPVAAPVASSNP 231

Query:   238 XXXXXXXXXXXXXXKLGSRPLEKDALRSFISSAMPFGTPVDLSYSNIFAIKVNGFPSSEL 297
                           K GSR L++D LR+FI++AMPFGTP+DLS SNI A+K NGF S++ 
Sbjct:   232 SGAAITGATASDAPKAGSRLLDRDLLRNFIATAMPFGTPLDLSLSNISAMKANGFSSADP 291

Query:   298 PPQDLKQPAWKPYLYKGKQRLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPD 357
             PPQ+LKQPAWKPYLYKGKQRLLFTIHETV AAMYDRDEIPD++SV+GQINCRAELEG+PD
Sbjct:   292 PPQELKQPAWKPYLYKGKQRLLFTIHETVSAAMYDRDEIPDNVSVAGQINCRAELEGLPD 351

Query:   358 VSFPLTGLNSAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKG 417
             VSFPL GL++AH+E +SFHP AQVP  G+DKQ ++F PPLGNFVLMRYQA CGLGPPVKG
Sbjct:   352 VSFPLAGLSTAHIEAISFHPCAQVPAHGIDKQNIVFQPPLGNFVLMRYQAGCGLGPPVKG 411

Query:   418 FYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNNE 477
             FYQLSMVSEDEGAFLFK+ LME YKAPL+MEFC +TM FPRRR+V+FDGTPS GTV   E
Sbjct:   412 FYQLSMVSEDEGAFLFKVHLMEGYKAPLSMEFCTITMPFPRRRIVAFDGTPSAGTVLTTE 471

Query:   478 HSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNVVNI 537
             HSVEW+I+ SGR+L+G+SLEATFPGT+KF+P Q++R   G   DE+S  E ++  NVVN+
Sbjct:   472 HSVEWRILGSGRSLSGKSLEATFPGTIKFSPLQSRRKGDGD--DEES--EDESAENVVNV 527

Query:   538 EEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAVKAPV 597
             E+FL++KMN DLP  +LEEPFCWQAY+YAKVSFKI+GAS+S MSID KSV+IYP  K+PV
Sbjct:   528 EDFLVQKMNKDLPAAELEEPFCWQAYDYAKVSFKIVGASVSRMSIDTKSVNIYPTTKSPV 587

Query:   598 EFSAQVTSGDYILWNTLGKCPSVA 621
             EFSAQVTSGDYILWNTLGK PS A
Sbjct:   588 EFSAQVTSGDYILWNTLGKAPSAA 611

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

DICTYBASE\|DDB_G0285113 DDB_G0285113 "MHD domain-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BXF7 MUDENG "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4R6Q7 AP5M1 "AP-5 complex subunit mu-1" [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9H0R1 AP5M1 "AP-5 complex subunit mu-1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5E9X5 AP5M1 "AP-5 complex subunit mu-1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SSM1 AP5M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RAC5 AP5M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E7EQ45 AP5M1 "AP-5 complex subunit mu-1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1921635 Ap5m1 "adaptor-related protein complex 5, mu 1 subunit" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		625
cd09256		271	cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a	1e-97
pfam00928		228	pfam00928, Adap_comp_sub, Adaptor complexes medium	2e-18
cd09252		248	cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi	2e-16
cd07954		239	cd07954, AP_MHD_Cterm, C-terminal domain of adapto	7e-11
cd09251		263	cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi	3e-05
cd09250		268	cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi	0.001
cd09261		254	cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med	0.002
cd09260		254	cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med	0.003

>gnl\|CDD\|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG)	Back alignment and domain information

 Score =  299 bits (767), Expect = 1e-97
 Identities = 123/317 (38%), Positives = 162/317 (51%), Gaps = 54/317 (17%)

Query: 305 PAWKPYLYKGKQRLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTG 364
           PAWKPYLYKGKQ+L F I ETV AA YD+D+IPD  SV G + C+AELEG+PDV+  L+ 
Sbjct: 1   PAWKPYLYKGKQQLDFKITETVKAAQYDKDDIPDVWSVFGSVTCKAELEGLPDVTVSLSL 60

Query: 365 L-NSAHVEVLSFHPSAQVPEQGV----DKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFY 419
             N + ++ +  HP  Q  + G+        + FSPPLGNF L  Y +     PP+KGFY
Sbjct: 61  PANGSPLQNIIVHPCVQSVDTGMLAFSGPYKLRFSPPLGNFQLCHYTSQSVPEPPIKGFY 120

Query: 420 QLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRR-VVSFDGTPSIGTV--SNN 476
           Q+    E+    L +L L E  K     E+C V + F  R  +V  + TPS+G V  S +
Sbjct: 121 QMKGE-ENHVKILIQLKLHEKVKNS--FEYCEVHIPFFNRGLIVHVEATPSVGQVKVSKD 177

Query: 477 EHSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNVVN 536
           +  + W I         +SLEAT  GTV F   Q                          
Sbjct: 178 KRLLVWNIGQKFP----KSLEATLSGTVNFGSEQ-------------------------- 207

Query: 537 IEEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVSIYPAVKAP 596
                           D+E+PFC     Y K+SFKI   ++SG SIDPKSV IYP+ K  
Sbjct: 208 -------------NEADVEDPFCTGLNAYVKLSFKISDFTLSGCSIDPKSVQIYPSSKPK 254

Query: 597 VEFSAQVTSGDYILWNT 613
           +  S +V S DYI+WN+
Sbjct: 255 IITSREVESSDYIIWNS 271

This family corresponds to the MHD found in a protein encoded by MuD, which is distantly related to the C-terminal domain of the mu2 subunit of AP complexes that participates in clathrin-mediated endocytosis. MuD is evolutionary conserved from mammals to amphibians. It is able to induce cell death by itself and plays an important role in cell death in various tissues. Length = 271

>gnl\|CDD\|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family	Back alignment and domain information

>gnl\|CDD\|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3	Back alignment and domain information

>gnl\|CDD\|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD)	Back alignment and domain information

>gnl\|CDD\|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2	Back alignment and domain information

>gnl\|CDD\|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1	Back alignment and domain information

>gnl\|CDD\|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3	Back alignment and domain information

>gnl\|CDD\|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		625
KOG0937		424	consensus Adaptor complexes medium subunit family	100.0
KOG0938		446	consensus Adaptor complexes medium subunit family	100.0
PF00928		262	Adap_comp_sub: Adaptor complexes medium subunit fa	100.0
KOG2740		418	consensus Clathrin-associated protein medium chain	100.0
KOG2677		922	consensus Stoned B synaptic vesicle biogenesis pro	99.9
PF10291		257	muHD: Muniscin C-terminal mu homology domain; Inte	98.86
KOG2635		512	consensus Medium subunit of clathrin adaptor compl	98.7
PF01217		141	Clat_adaptor_s: Clathrin adaptor complex small cha	97.06
KOG0937		424	consensus Adaptor complexes medium subunit family	92.07

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=3.6e-75  Score=617.93  Aligned_cols=392  Identities=21%  Similarity=0.237  Sum_probs=343.2

Q ss_pred             cCCCCCCCcccCCCCCccccCC-cchhhHHHHHHhhhcccccccccceeEeecCCCccccccccccCccccccccccccc
Q 006936          150 KKSDCGNAVGVDDSLSSLLLDL-PSITGAFMVAHAIGDIITGDVVEPEVVVSASPSVGGLLDSLTGSIGISGISSRAKPV  228 (625)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~-~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~  228 (625)
                      ...||++   .+.-.|....+. -++++.||. +.+++. .||..+|.++..-++++++..|.|+..+.  +   |.++.
T Consensus         5 fild~~G---~~lisr~yr~dv~~s~~~~F~~-~l~~~e-~~~~~~p~l~~~g~~~~~ik~s~lylv~~--~---~~n~~   74 (424)
T KOG0937|consen    5 FILDHKG---EVLISRDYRGDVPMSSTEKFFR-KLFEKE-EGDESPPFLVHDGSRFIHIKHSNLYLVAG--T---RPNVS   74 (424)
T ss_pred             EEEcCCC---cEeEeecccccCChhhhhhHHH-HHhhhc-ccCCCCCeEEeCCceEEEEeecceEEEEE--e---ccCCC
Confidence            3345543   333334444455 578999998 667777 99999999999999999999999999884  2   88899


Q ss_pred             ccccccCCCCCcccccccccCCCCCCCCCCchhHHHHHHHhhCCCCcccccCchhhhheeecCC---CCC--CCCCCCCC
Q 006936          229 AAPVASTAPSGAAAVGTVASDAPKLGSRPLEKDALRSFISSAMPFGTPVDLSYSNIFAIKVNGF---PSS--ELPPQDLK  303 (625)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyELLDE~mdFG~Pq~T~~~~Lk~~i~~~~---~~~--~~~~~~~k  303 (625)
                      |+++.+.-.+.+..++...+ +.+-++...+-.++||||||+|||||||.|+.+.|+.||++..   ...  +++.+.++
T Consensus        75 a~~v~~~l~~~~~v~~~y~~-~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~~~~l~~~~~~~p~avtn  153 (424)
T KOG0937|consen   75 AALVLSFLYAVADVFGDYLS-ELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQKANRLQDAQPRPPLAVTN  153 (424)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-cCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhcccccceeecCCCCCccccc
Confidence            99999999999999999999 5555666668899999999999999999999999999998742   111  35889999


Q ss_pred             CCccCCCCCCccc-EEEEEEEEEEEEEEEcCCCCeEEEEEEEEEEEeeeecCCCeEEEeecCCCC------------ccc
Q 006936          304 QPAWKPYLYKGKQ-RLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLNS------------AHV  370 (625)
Q Consensus       304 ~~~WR~~giKykk-EIfvDViE~Vn~~l~d~~G~vl~seI~G~I~~Ks~LSGmPev~L~LN~~~~------------~~L  370 (625)
                      +++||+.+++|+| |+|+||+|+|++ +++++|++++++|.|+|+|||||+|||+|+|+||+..+            +.|
T Consensus       154 avsWrs~gi~~~KnevflDViE~Vs~-l~~~~G~vl~s~i~G~I~~k~~LsGmPelrl~ln~~~~~~~~~~~~~s~~v~l  232 (424)
T KOG0937|consen  154 AVSWRSEGIYYGKNEVFLDVIESVSL-LYDSNGIVLLSEIVGTIKLKCYLSGMPELRLGLNDKVLFDKQGPRSKSKGVEL  232 (424)
T ss_pred             ceeecccccccccceEEEEhhhhhhH-hhhcCCcEEEeeeeeEEEEEEEcCCCceeeeecCcccccccccccccCcceEe
Confidence            9999999999988 999999999997 99999999999999999999999999999999999853            489


Q ss_pred             cccccccccccCCccCcCCEEEEeCCCCeEEEEEEeeccCCCCCeEEEEEEEEecCCcceEEEEEEEEecCCCCceeeEE
Q 006936          371 EVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFC  450 (625)
Q Consensus       371 dDvsFHqCV~l~~fe~d~r~IsFiPPDGeF~LM~Yri~~~~~pPf~v~~qv~~~s~~~~~f~v~Lkl~~~~k~~~~ae~v  450 (625)
                      +|++|||||++++|+.| |+|+|+||||+|+||+||++...+ |+..++++.+. ..+.++++.+|++++||++..|++|
T Consensus       233 edi~fh~~v~l~~fd~d-r~i~FiPPdGeF~Lm~Y~ls~~vk-Pli~~~~~~~~-~~~~ri~i~~K~~~~fk~~~~a~~v  309 (424)
T KOG0937|consen  233 EDIKFHECVRLSRFDND-RTISFIPPDGEFELMRYRLSTHVK-PLIWFYQLIEE-HSRSRIEVMVKLREQFKSRSSANNV  309 (424)
T ss_pred             eecccceeechhhccCC-ceEEecCCCCceEEEEEEecCCCC-CeEEeeeeeee-ccceeEEEEEechhhcCCccccceE
Confidence            99999999999999999 999999999999999999997655 77778888876 5567899999999999999999999


Q ss_pred             EEEEecCCCCeeeeEeeecceeEEeeC--CeEEEEEecCCccccCCCceEEEEEEEEeccccccccCCCCCCCCCCcccc
Q 006936          451 NVTMLFPRRRVVSFDGTPSIGTVSNNE--HSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIET  528 (625)
Q Consensus       451 ~V~IP~P~~~i~s~~~~~S~G~v~~~~--~~liW~I~~~gkkf~~g~~E~tL~g~v~l~~~~~~r~~~~~~~~ed~~~~~  528 (625)
                      +|+||+|. .+.+++++.+.|+++|.+  ++++|+|    ++| +|+.|++|++++.|++..+                 
T Consensus       310 ~I~iP~P~-~a~~~~fk~s~G~~~~~~e~~~l~W~I----~~~-~gg~e~~~r~~~~lp~~~~-----------------  366 (424)
T KOG0937|consen  310 EICIPVPD-DASSPSFKTSLGSAKYDPEKSALRWTI----KKF-VGGKEYSLRARMDLPSEEH-----------------  366 (424)
T ss_pred             EEEeeCCC-ccccceEeccCCceeeecccceEEEEe----ccc-cCCceEEEEEeecCCcccc-----------------
Confidence            99999998 799999999999999954  9999999    556 8999999999999975321                 


Q ss_pred             ccCCCcchhHHHHHhhhccCCCCCCCCCccccccCceEEEEEEECceecccceEEeeee-------EeecccccCCCCcc
Q 006936          529 DNTNNVVNIEEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSV-------SIYPAVKAPVEFSA  601 (625)
Q Consensus       529 ~~t~~~~n~~e~~~~k~~~~~~~~d~~dp~c~~~~~pIsl~FeIP~~T~SGLkVd~LkV-------~~~kwVKY~~~~s~  601 (625)
                                                +++ |++...||+|+|+||+||+||+||+|+++       ++++||||      
T Consensus       367 --------------------------e~~-~~~~~~pi~v~FeIp~~T~SgiqVrylki~ep~~~y~s~~WVRy------  413 (424)
T KOG0937|consen  367 --------------------------EEQ-CTEGLGPIKVKFEIPYFTVSGIQVRYLKIIEPKSQYQSLPWVRY------  413 (424)
T ss_pred             --------------------------CCC-CcccCCceEEEEEecccccCCeEEEEEEecccccCCCccceEEE------
Confidence                                      111 77888899999999999999999999999       49999999      


Q ss_pred             eEEeccEEEEc
Q 006936          602 QVTSGDYILWN  612 (625)
Q Consensus       602 ~T~Sg~Y~Iwn  612 (625)
                      .|+||+|++|.
T Consensus       414 ~T~s~~Y~~r~  424 (424)
T KOG0937|consen  414 NTQSGPYEIRV  424 (424)
T ss_pred             EccCCceEeeC
Confidence            99999999973

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans	Back alignment and domain information

>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		625
1i31_A		314	Clathrin coat assembly protein AP50; beta-sandwich	2e-22
3l81_A		301	AP-4 complex subunit MU-1; immunoglobulin-like bet	5e-18
3ml6_A		385	Chimeric complex between protein dishevlled2 HOMO	9e-18
2vgl_M		435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	4e-17
1w63_M		423	Adaptor-related protein complex 1, MU 1 subunit; e	2e-16
4en2_M		266	AP-1 complex subunit MU-1; human immunodeficiency	9e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314	Back alignment and structure

 Score = 97.7 bits (242), Expect = 2e-22
 Identities = 54/275 (19%), Positives = 98/275 (35%), Gaps = 40/275 (14%)

Query: 259 EKDALRSFISSAMPFGTPVDLSYSNIFAIKVNGFPSSELPPQDLKQPAWKPYLYKGKQRL 318
           E  AL++FI+               I +        S++  Q   Q  W+    K ++  
Sbjct: 4   ETGALKTFITQ------------QGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNE 51

Query: 319 LF-TIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLT-------------- 363
           LF  + E+V+  +        S  VSG++  ++ L GMP+  F +               
Sbjct: 52  LFLDVLESVNL-LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTAD 110

Query: 364 -----GLNSAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGF 418
                G  S  ++  +FH   ++ +   ++  + F PP G F LMRY+    +  P +  
Sbjct: 111 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERS-ISFIPPDGEFELMRYRTTKDIILPFRVI 169

Query: 419 YQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNN-- 476
             +  V   +     K+ +  ++K  L  +   V +  P             G       
Sbjct: 170 PLVREVGRTK--LEVKVVIKSNFKPSLLAQKIEVRIPTP-LNTSGVQVICMKGKAKYKAS 226

Query: 477 EHSVEWKIMT-SGRALTGRSLEATFPGTVKFAPWQ 510
           E+++ WKI   +G   +  S E     T     W 
Sbjct: 227 ENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWA 261

PyMOL of 1i31

>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301	Back alignment and structure

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385	Back alignment and structure

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435	Back alignment and structure

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423	Back alignment and structure

>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		625
2vgl_M		435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	100.0
1w63_M		423	Adaptor-related protein complex 1, MU 1 subunit; e	100.0
1i31_A		314	Clathrin coat assembly protein AP50; beta-sandwich	100.0
4en2_M		266	AP-1 complex subunit MU-1; human immunodeficiency	100.0
3ml6_A		385	Chimeric complex between protein dishevlled2 HOMO	100.0
3l81_A		301	AP-4 complex subunit MU-1; immunoglobulin-like bet	100.0
3g9h_A		328	Suppressor of yeast profilin deletion; SYP1, MU, a	98.55
1w63_Q		158	Adapter-related protein complex 1 sigma 1A subunit	97.98
2vgl_S		142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	97.55
3tjz_C		153	Coatomer subunit zeta-1; protein trafficking, golg	96.4

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M	Back alignment and structure

Probab=100.00  E-value=2.3e-65  Score=554.31  Aligned_cols=289  Identities=19%  Similarity=0.278  Sum_probs=244.1

Q ss_pred             hHHHHHHHhhCCCCcccccCchhhhheeecCCCC---------CCCCCCCCCCCccCCCCCCccc-EEEEEEEEEEEEEE
Q 006936          261 DALRSFISSAMPFGTPVDLSYSNIFAIKVNGFPS---------SELPPQDLKQPAWKPYLYKGKQ-RLLFTIHETVHAAM  330 (625)
Q Consensus       261 ~~lyELLDE~mdFG~Pq~T~~~~Lk~~i~~~~~~---------~~~~~~~~k~~~WR~~giKykk-EIfvDViE~Vn~~l  330 (625)
                      ..+|++||||||+|+||+|+++.|++++......         ..++.+.+++++||+.|++|++ ||||||+|+|++ +
T Consensus       106 ~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~-~  184 (435)
T 2vgl_M          106 VLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL-L  184 (435)
T ss_dssp             HHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------CCSSCSCCCCSSCEEEEEEEEEEEE-E
T ss_pred             HHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccccccccccCCcCcceEEEEEEEEEEE-E
Confidence            7999999999999999999999999999874321         1234467789999999999998 999999999999 9


Q ss_pred             EcCCCCeEEEEEEEEEEEeeeecCCCeEEEeecCC-------------------CCccccccccccccccCCccCcCCEE
Q 006936          331 YDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGL-------------------NSAHVEVLSFHPSAQVPEQGVDKQAV  391 (625)
Q Consensus       331 ~d~~G~vl~seI~G~I~~Ks~LSGmPev~L~LN~~-------------------~~~~LdDvsFHqCV~l~~fe~d~r~I  391 (625)
                      ++++|.+++++|.|+|+|||+|||||+|+|+||++                   ....|+||+|||||++++|+.+ |+|
T Consensus       185 ~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~-r~i  263 (435)
T 2vgl_M          185 MSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSE-RSI  263 (435)
T ss_dssp             ECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC-----------------CCCCCEEEECTTEEEC------CCE
T ss_pred             EcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccccccccccccCceEccccccceeecHhHhccC-ceE
Confidence            99999999999999999999999999999999985                   1257999999999999999999 999


Q ss_pred             EEeCCCCeEEEEEEeeccCCCCCeEEEEEEEEecCCcceEEEEEEEEecCCCCceeeEEEEEEecCCCCeeeeEeeecce
Q 006936          392 MFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIG  471 (625)
Q Consensus       392 sFiPPDGeF~LM~Yri~~~~~pPf~v~~qv~~~s~~~~~f~v~Lkl~~~~k~~~~ae~v~V~IP~P~~~i~s~~~~~S~G  471 (625)
                      +|+||||+|+||+||++.+..+||.+.+.++..++  .+++++++++..++.+..+++|.|+||+|+ .+..+.++++.|
T Consensus       264 sF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~--~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~-~~~~~~~~~~~G  340 (435)
T 2vgl_M          264 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR--TKLEVKVVIKSNFKPSLLAQKIEVRIPTPL-NTSGVQVICMKG  340 (435)
T ss_dssp             EECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTT--TEEEEEEEEEECSCTTSEEEEEEEEEECCS-SCCCEEEEESSS
T ss_pred             EEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCC--CEEEEEEEEeCCCCCCceeeEEEEEEECCC-CCCCceEEecce
Confidence            99999999999999998888899999999986543  368899988888888778999999999999 788899999999


Q ss_pred             eEEeeC--CeEEEEEecCCccccCCCceEEEEEEEEeccccccccCCCCCCCCCCccccccCCCcchhHHHHHhhhccCC
Q 006936          472 TVSNNE--HSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNVVNIEEFLMEKMNMDL  549 (625)
Q Consensus       472 ~v~~~~--~~liW~I~~~gkkf~~g~~E~tL~g~v~l~~~~~~r~~~~~~~~ed~~~~~~~t~~~~n~~e~~~~k~~~~~  549 (625)
                      +++|++  ++++|+|   + +| +|++|++|+|++.|.+....          +                     .| ..
T Consensus       341 ~~~y~~~~~~l~W~I---~-~~-~~~~~~~l~~~~~l~~~~~~----------~---------------------~~-~~  383 (435)
T 2vgl_M          341 KAKYKASENAIVWKI---K-RM-AGMKESQISAEIELLPTNDK----------K---------------------KW-AR  383 (435)
T ss_dssp             EEEEETTTTEEEEEE---E-EE-ETTCEEEEEEEEECCCCSCS----------C---------------------CC-CC
T ss_pred             eEEEccCCCEEEEEe---c-cC-CCCCCEEEEEEEEecCCCcC----------c---------------------cc-CC
Confidence            999965  9999999   5 46 88899999999999743100          0                     00 12


Q ss_pred             CCCCCCCccccccCceEEEEEEECceecccceEEeeeeE----------eecccccCCCCcceEEeccEEEEc
Q 006936          550 PPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVS----------IYPAVKAPVEFSAQVTSGDYILWN  612 (625)
Q Consensus       550 ~~~d~~dp~c~~~~~pIsl~FeIP~~T~SGLkVd~LkV~----------~~kwVKY~~~~s~~T~Sg~Y~Iwn  612 (625)
                      +              ||+|+|+|| +++|||+|++|+|.          +||||||      +|+||+|++|.
T Consensus       384 ~--------------pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY------~t~sg~y~~R~  435 (435)
T 2vgl_M          384 P--------------PISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRY------IGRSGIYETRC  435 (435)
T ss_dssp             C--------------CEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEE------EEEEEEEEECC
T ss_pred             C--------------cEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceEE------EEeCCeEEEcC
Confidence            3              999999999 99999999999992          7999999      99999999984

PyMOL of 2vgl

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A	Back alignment and structure

>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A	Back alignment and structure

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}	Back alignment and structure

>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}	Back alignment and structure

>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}	Back alignment and structure

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S	Back alignment and structure

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		625
d2pr9a1		277	b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s	6e-16

>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277	Back information, alignment and structure


class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.3 bits (187), Expect = 6e-16
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 31/202 (15%)

Query: 307 WKP--YLYKGKQRLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPL-- 362
           W+     Y+ +  L   + E+V+  +        S  VSG++  ++ L GMP+  F +  
Sbjct: 3   WRREGIKYR-RNELFLDVLESVNL-LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 363 -----------------TGLNSAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRY 405
                            +G  S  ++  +FH   ++ +   ++  + F PP G F LMRY
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERS-ISFIPPDGEFELMRY 119

Query: 406 QAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSF- 464
           +    +  P +    +  V   +      +          ++    + +  P     S  
Sbjct: 120 RTTKDIILPFRVIPLVREVGRTKLEVKVVI----KSNFKPSLLAQKIEVRIPTPLNTSGV 175

Query: 465 DGTPSIGTVSNN--EHSVEWKI 484
                 G       E+++ WKI
Sbjct: 176 QVICMKGKAKYKASENAIVWKI 197

PyMOL of d2pr9a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		625
d2pr9a1		277	Second domain of Mu2 adaptin subunit (ap50) of ap2	100.0
d2vglm2		141	Mu2 adaptin (clathrin coat assembly protein AP50)	98.19
d2vgls_		142	Sigma2 adaptin (clathrin coat assembly protein AP1	97.22

>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-56  Score=454.98  Aligned_cols=244  Identities=20%  Similarity=0.309  Sum_probs=212.7

Q ss_pred             CccCCCCCCccc-EEEEEEEEEEEEEEEcCCCCeEEEEEEEEEEEeeeecCCCeEEEeecCCC-----------------
Q 006936          305 PAWKPYLYKGKQ-RLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLN-----------------  366 (625)
Q Consensus       305 ~~WR~~giKykk-EIfvDViE~Vn~~l~d~~G~vl~seI~G~I~~Ks~LSGmPev~L~LN~~~-----------------  366 (625)
                      |+||+.|++|++ ||||||+|+|++ +++++|.+++++|.|+|+|+|||+|||+|+|+||++.                 
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~-~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~   79 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNL-LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSG   79 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEE-EECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEE-EECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhcccccccccccccccc
Confidence            689999999999 999999999999 9999999999999999999999999999999999762                 


Q ss_pred             --CccccccccccccccCCccCcCCEEEEeCCCCeEEEEEEeeccCCCCCeEEEEEEEEecCCcceEEEEEEEEecCCCC
Q 006936          367 --SAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAP  444 (625)
Q Consensus       367 --~~~LdDvsFHqCV~l~~fe~d~r~IsFiPPDGeF~LM~Yri~~~~~pPf~v~~qv~~~s~~~~~f~v~Lkl~~~~k~~  444 (625)
                        ...|+||+||+||+++.|+.+ |+|+|+||||+|+||+||+.....+||.+.+.+...+++  ++++.+++..+++..
T Consensus        80 ~~~~~l~d~~fH~cV~~~~f~~~-~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~~~--~~~~~i~l~~~~~~~  156 (277)
T d2pr9a1          80 KQSIAIDDCTFHQCVRLSKFDSE-RSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRT--KLEVKVVIKSNFKPS  156 (277)
T ss_dssp             CCCBCCSEEEECTTSBCC------CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEETTT--EEEEEEEEEECSCTT
T ss_pred             cCceEccceeeeecccccccccc-ceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEeccCc--EEEEEEEEEeccCCC
Confidence              157999999999999999999 999999999999999999988889999999988876544  567888888888877


Q ss_pred             ceeeEEEEEEecCCCCeeeeEeeecceeEEeeC--CeEEEEEecCCccccCCCceEEEEEEEEeccccccccCCCCCCCC
Q 006936          445 LTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNNE--HSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDE  522 (625)
Q Consensus       445 ~~ae~v~V~IP~P~~~i~s~~~~~S~G~v~~~~--~~liW~I~~~gkkf~~g~~E~tL~g~v~l~~~~~~r~~~~~~~~e  522 (625)
                      ..+++|.|+||+|. ++..+++.++.|+++|+.  +.++|+|   + || +++.+++|+|++.+.+....          
T Consensus       157 ~~~~~v~I~iP~P~-~~~~~~~~~~~G~~~y~~~~~~l~W~I---~-k~-~~~~~~~l~~~~~~~~~~~~----------  220 (277)
T d2pr9a1         157 LLAQKIEVRIPTPL-NTSGVQVICMKGKAKYKASENAIVWKI---K-RM-AGMKESQISAEIELLPTNDK----------  220 (277)
T ss_dssp             CEEEEEEEEEECCT-TEEEEEEEESSSEEEEEGGGTEEEEEE---E-EE-ETTCEEEEEEEEEECCCCSS----------
T ss_pred             eeeeEEEEEeeCCC-cccCceEEecCceEEEeccCCEEEEec---c-cc-cCCccceEEEEEEeccCCCC----------
Confidence            78999999999999 788899999999999965  9999999   4 46 88999999999999753200          


Q ss_pred             CCccccccCCCcchhHHHHHhhhccCCCCCCCCCccccccCceEEEEEEECceecccceEEeeeeE----------eecc
Q 006936          523 DSDIETDNTNNVVNIEEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVS----------IYPA  592 (625)
Q Consensus       523 d~~~~~~~t~~~~n~~e~~~~k~~~~~~~~d~~dp~c~~~~~pIsl~FeIP~~T~SGLkVd~LkV~----------~~kw  592 (625)
                       .                     ....+              ||+|+|+|| |++|||+|++|+|.          +|||
T Consensus       221 -~---------------------~~~~~--------------pi~v~F~ip-~t~Sgl~V~~l~v~~~~~~~~~~~~~k~  263 (277)
T d2pr9a1         221 -K---------------------KWARP--------------PISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKW  263 (277)
T ss_dssp             -S---------------------CCCCC--------------CEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGSEEE
T ss_pred             -c---------------------cccCC--------------cEEEEEEec-ccccceEEEEEEEeccccCCCCCCCCCC
Confidence             0                     00223              899999999 79999999999993          7999


Q ss_pred             cccCCCCcceEEeccEEEE
Q 006936          593 VKAPVEFSAQVTSGDYILW  611 (625)
Q Consensus       593 VKY~~~~s~~T~Sg~Y~Iw  611 (625)
                      |||      +|+||+|++|
T Consensus       264 vrY------~t~sg~Y~~R  276 (277)
T d2pr9a1         264 VRY------IGRSGIYETR  276 (277)
T ss_dssp             EEE------EEEEEEEEEC
T ss_pred             EEE------EEECCCEEEC
Confidence            999      9999999997

PyMOL of d2pr9a1