Citrus Sinensis ID: 006949

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620----
MAPTVPIDFIGQKQSKKCLTSQMMGKSRKYSKGHSSGFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPKKPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVTVDMTAVPSRADDMIETETRMGMPPMKKKKVSPKETKIKAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHSAGETGEDELEIDIDALSDDTLFALRKLLDDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDPPVTDIPPVAIEKDAANRNSKCSSSSSSSSESGSSSSDSDSGSSSGSEPDAAKASVPANAVEENLVSGANLDEKKSEGVPDIGNSSVNSLDQVELNSQGKPVAIVADGHHEGESAPSERQVSPDKLYRAALLRNRFADTILKAREKALEKVFVI
ccccccEEcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHcccccccc
ccccEEEEccccccccccccHHcccccHHHcccccccccccccccEEccccccccccccccccccccccccccccccEEEEcccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccEEcccEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccccccccccccEEEEccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEc
maptvpidfigqkqskkcltsqmmgksrkyskghssgfvpdyRHAVETMaesegfgssgrvdtemtasedscapkrkcislnidgydnfgvPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVASLSsnvvlspssdirscndgqkrpllesvggpsvvlapkgkkrapngrngpqtkkgnsgrlepkkpagaasssNAMLMKQCENLLTRLMShqfgwvfntpvdvmklnipdyftvikhpmdlgtikckitsgqysdplafAADVRLTfsnamtynppqndvhIMADTLRKYFEVRWKAIEKklpvtvdmtavpsraddmietetrmgmppmkkkkvspketkikaepvrrvMTNEEKRILSTELEALLEELPESIIDFLkehsagetgedeleIDIDALSDDTLFALRKLLDDYLLEKQqkqanpgpcemevlnesglsnssmqlckgndlvdedvdivggndppvtdippvaiekdaanrnskcssssssssesgssssdsdsgsssgsepdaakasvpanaveenlvsganldekksegvpdignssvnsldqvelnsqgkpvaivadghhegesapserqvspDKLYRAALLRNRFADTILKAREKALEKVFVI
maptvpidfigqkqskkcltSQMMGKsrkyskghssgFVPDYRHAVETMAEsegfgssgrvDTEMtasedscapkRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKkvaslssnvvlspssdirscndgqkrpllesvggpsvvlapkgkkrapngrngpqtkkgnsgrlepkkpagaasssNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMtynppqndvHIMADTLRKYFEVRWKAIekklpvtvdmtavpsraddmietetrmgmppmkkkkvspketkikaepvrrvmtneeKRILSTELEALLEELPESIIDFLKEHSAGETGEDELEIDIDALSDDTLFALRKLLDDYLLEKQqkqanpgpCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGgndppvtdipPVAIEKDaanrnskcssssssssesgssssdsdsgssSGSEPDAAKASVPANAVEENLVSGANLDEKKSEGVPDIGNSSVNSLDQVELNSQGKPVAIVADGHHegesapserqvspDKLYRAALLRNRFADTILKAREKALEKVFVI
MAPTVPIDFIGQKQSKKCLTSQMMGKSRKYSKGHSSGFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVAslssnvvlspssDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPKKPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVTVDMTAVPSRADDMIETETRmgmppmkkkkvspketkikAEPVRRVMTNEEKRIlstelealleelpeSIIDFLKEHSAGETGEDELEIDIDALSDDTLFALRKLLDDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDPPVTDIPPVAIEKDAANRNSKCssssssssesgssssdsdsgsssgsePDAAKASVPANAVEENLVSGANLDEKKSEGVPDIGNSSVNSLDQVELNSQGKPVAIVADGHHEGESAPSERQVSPDKLYRAALLRNRFADTILKAREKALEKVFVI
***************************************************************************RKCISLNIDGYDNFGVPLQVLTLS********************VRVL**************************************************************************************ENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVR***************VHIMADTLRKYFEVRWKAIEKKLPVTVDMT*****************************************************LEALLEELPESIIDFLK**********ELEIDIDALSDDTLFALRKLLDDYLL**********************************LV**DVDIV*********************************************************************************************************************************LYRAALLRNRFADTILKAREKAL******
**PTVPI*********************************DYR********************************************************************************************************************************************************************QCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL************************************************MTNE****************PESII******************DIDALSDDTLFALRKL*********************************************************************************************************************************************************************************KLYRAALLRNRFADTILKAREKALEKVFVI
MAPTVPIDFIGQK**********************SGFVPDYRHAVETMAESEGFGSSGRV***********APKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPK**********************************NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVTVDMTAVPSRADDMIETETRMGM*************KIKAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHSAGETGEDELEIDIDALSDDTLFALRKLLDDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDPPVTDIPPVAIEKDA******************************************ANAVEENLVSGANLDEKKSEGVPDIGNSSVNSLDQVELNSQGKPVAIVADGH*************PDKLYRAALLRNRFADTILKAREKALEKVFVI
*APTVPIDFIGQKQSKKCLT**M**KSRKYSKGHSSGFVPDYRHAVETM************************PKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVASL*********************************************************************SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEK*************************************************VMTNEEKRILSTELEALLEELPESIIDFLKEHSAGETGEDELEIDIDALSDDTLFALRKLLDDYLLEKQQ********************************DEDVDIVGGNDPPVTDIPPVAIEKDA*********************************************************************************************************VSPDKLYRAALLRNRFADTILKAREKALEKVFVI
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SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPTVPIDFIGQKQSKKCLTSQMMGKSRKYSKGHSSGFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPKKPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVTVDMTAVPSRADDMIETETRMGMPPMKKKKVSPKETKIKAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHSAGETGEDELEIDIDALSDDTLFALRKLLDDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDPPVTDIPPVAIEKDAANRNSKCSSSSSSSSESGSSSSDSDSGSSSGSEPDAAKASVPANAVEENLVSGANLDEKKSEGVPDIGNSSVNSLDQVELNSQGKPVAIVADGHHEGESAPSERQVSPDKLYRAALLRNRFADTILKAREKALEKVFVI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query624 2.2.26 [Sep-21-2011]
Q9FGW9 1061 Transcription factor GTE1 yes no 0.911 0.536 0.506 1e-135
Q9LK27 813 Transcription factor GTE8 no no 0.850 0.653 0.446 1e-114
Q93YS6 688 Transcription factor GTE9 no no 0.796 0.722 0.449 1e-107
Q93ZB7620 Transcription factor GTE1 no no 0.591 0.595 0.461 4e-85
Q9S7T1461 Transcription factor GTE3 no no 0.458 0.620 0.314 6e-40
Q9LNC4766 Transcription factor GTE4 no no 0.357 0.291 0.370 7e-38
Q8H1D7487 Transcription factor GTE5 no no 0.283 0.363 0.367 3e-30
Q9LS28494 Transcription factor GTE1 no no 0.163 0.206 0.558 2e-29
Q7Y214590 Transcription factor GTE7 no no 0.323 0.342 0.340 1e-27
Q84XV2386 Transcription factor GTE1 no no 0.379 0.613 0.341 2e-26
>sp|Q9FGW9|GTE10_ARATH Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2 Back     alignment and function desciption
 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 309/610 (50%), Positives = 405/610 (66%), Gaps = 41/610 (6%)

Query: 24  MGKSRKYSKGHSSGFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNI 83
           MGK+RK+S+G  SGFVPDY  AVE     + F  S R++     SE S   KR+   LN 
Sbjct: 1   MGKARKHSRGRPSGFVPDYMQAVEP----DEFVYSERMN-----SEASPPLKRRRFGLN- 50

Query: 84  DGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVASLSSN-VVLSPSSDI 142
              DN GV  +VL+LSKMS++ER++L  KLK +L+QVR L KK+AS SS+ V+LSP +D 
Sbjct: 51  --GDNNGVSKEVLSLSKMSRSERKNLVHKLKMELQQVRDLSKKIASFSSDTVLLSPYND- 107

Query: 143 RSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPKKPAGAASSSN 202
            SC+DG +RP  E+    +  +  +GKKR P   +  + KKG      P +     S + 
Sbjct: 108 HSCSDGPRRPPPENF---ATFVGSQGKKRPPVRSDKQRNKKG------PSRLNVPTSYTV 158

Query: 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS 262
           A +MK+CE LL RL SH+ GW F TPVD + LNIPDYF VIKHPMDLGTI+ ++  G+YS
Sbjct: 159 ASVMKECETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCKGEYS 218

Query: 263 DPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVTVDMTAVPSR 322
            PL FAADVRLTFSN++ YNPP N  H MA  + KYFE  WK+IEKK+P++     +P  
Sbjct: 219 SPLDFAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIEKKIPMS-KPPVIPLT 277

Query: 323 ADDMIETETRMGMPPMKKKKVSPKETKIKAEPVRRVMTNEEKRILSTELEALLEELPESI 382
           +   +E+E    + PM+KK+ +  + K++ EP + VMT+ EK+ L  +L AL E+ P+ I
Sbjct: 278 SSASLESEIPFEVAPMRKKEAAMNDNKLRVEPAKLVMTDGEKKKLGQDLMALEEDFPQKI 337

Query: 383 IDFLKEHSA--GETGEDELEIDIDALSDDTLFALRKLLDDYLLEKQQKQANPGPCEMEVL 440
            D L+E S   G++GE E+EIDI+ALSD+ LF +RKLLDDYL EK++      PCEME++
Sbjct: 338 ADLLREQSGSDGQSGEGEIEIDIEALSDEILFMVRKLLDDYLREKKKSMEKSEPCEMEIV 397

Query: 441 NESGLSNSSMQLCKGNDLVDEDVDIVGGNDPPVTDIPPVAIEKDAANRNSKCSSSSSSSS 500
           ++SG SNS +Q  KG+  +DEDVDIVGGNDP V+  PP+ IEKDAA RN++ SSSSSSSS
Sbjct: 398 HDSGFSNSPLQPSKGDLQIDEDVDIVGGNDPSVSSHPPLKIEKDAACRNNESSSSSSSSS 457

Query: 501 ESGSSSSDSDSGSSSGSEPDAAKASVPANAVEENLVSGANLDEKKSEGVPD--IGNSSVN 558
           ESGSSSSDSDS SSSGSE D+ KAS P  + EE    G  +D+K+ +   +  + N S+N
Sbjct: 458 ESGSSSSDSDSCSSSGSETDSIKASKPT-SREEKKQPGVGIDKKEDDSNSEKIVVNDSLN 516

Query: 559 SLDQVELNSQGK-----PVAIVADGHHEGESAPSERQV---SPDKLYRAALLRNRFADTI 610
            LDQ+E     K      V +V D     E+AP ERQ+   SPDK YRAA L+NRFADTI
Sbjct: 517 ELDQLEHTVGEKSTTMDAVVLVPD----EETAPPERQISPDSPDKRYRAAFLKNRFADTI 572

Query: 611 LKAREKALEK 620
           +KAREKA  K
Sbjct: 573 MKAREKAFTK 582
Acts as a negative regulator in plant response to changes in environmental conditions through the control of ABA-regulated gene expression.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LK27|GTE8_ARATH Transcription factor GTE8 OS=Arabidopsis thaliana GN=GTE8 PE=2 SV=2 Back     alignment and function description
>sp|Q93YS6|GTE9_ARATH Transcription factor GTE9 OS=Arabidopsis thaliana GN=GTE9 PE=1 SV=1 Back     alignment and function description
>sp|Q93ZB7|GTE11_ARATH Transcription factor GTE11 OS=Arabidopsis thaliana GN=GTE11 PE=1 SV=1 Back     alignment and function description
>sp|Q9S7T1|GTE3_ARATH Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana GN=GTE3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LNC4|GTE4_ARATH Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1D7|GTE5_ARATH Transcription factor GTE5, chloroplastic OS=Arabidopsis thaliana GN=GTE5 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS28|GTE12_ARATH Transcription factor GTE12 OS=Arabidopsis thaliana GN=GTE12 PE=2 SV=2 Back     alignment and function description
>sp|Q7Y214|GTE7_ARATH Transcription factor GTE7 OS=Arabidopsis thaliana GN=GTE7 PE=2 SV=1 Back     alignment and function description
>sp|Q84XV2|GTE1_ARATH Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query624
255540327 759 bromodomain-containing protein, putative 0.971 0.798 0.685 0.0
359491054 770 PREDICTED: LOW QUALITY PROTEIN: transcri 0.974 0.789 0.667 0.0
224136059709 global transcription factor group [Popul 0.878 0.772 0.666 0.0
356516581 786 PREDICTED: transcription factor GTE10-li 0.990 0.786 0.635 0.0
356508786 781 PREDICTED: transcription factor GTE10-li 0.987 0.788 0.638 0.0
297734375700 unnamed protein product [Vitis vinifera] 0.870 0.775 0.638 0.0
449440580 781 PREDICTED: transcription factor GTE10-li 0.990 0.791 0.624 0.0
356513665 739 PREDICTED: transcription factor GTE8-lik 0.923 0.779 0.578 1e-175
296090258714 unnamed protein product [Vitis vinifera] 0.873 0.763 0.565 1e-160
359488601 739 PREDICTED: transcription factor GTE8-lik 0.913 0.771 0.572 1e-157
>gi|255540327|ref|XP_002511228.1| bromodomain-containing protein, putative [Ricinus communis] gi|223550343|gb|EEF51830.1| bromodomain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/624 (68%), Positives = 491/624 (78%), Gaps = 18/624 (2%)

Query: 1   MAPTVPIDFIGQKQSKKC-LTSQMMGKSRKYSKGHSSGFVPDYRHAVETMAESEGFGSSG 59
           MAPTVPI+FIGQK+SKKC L+SQ MGKSRKYSKG SSGFVPDYRHAVET+ ESEGFGSSG
Sbjct: 1   MAPTVPIEFIGQKESKKCWLSSQPMGKSRKYSKGLSSGFVPDYRHAVETVGESEGFGSSG 60

Query: 60  RVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQ 119
           RVDTEMTASEDS APKRKC+SL+ DG+D F VP+QVL+LSKMS+ ER++L+L+ K +LEQ
Sbjct: 61  RVDTEMTASEDSYAPKRKCMSLSFDGHDTFTVPMQVLSLSKMSRFERKNLKLRFKRELEQ 120

Query: 120 VRVLQKKVASLSSNVV-LSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNG 178
           VR L KKVASL SN   LSPSSDIRSC+DG KRP LE++     V AP+ KKR P GRNG
Sbjct: 121 VRFLYKKVASLGSNAAALSPSSDIRSCSDGLKRPPLETLHKSYAVSAPQSKKRGPPGRNG 180

Query: 179 PQTKKGNSGRLEPKKPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPD 238
            +TKK +  R EP+K A    +SNAMLMKQCE LL+RLM HQ+ WVFN PVDV KLNIPD
Sbjct: 181 ARTKKSSHKRSEPEKLAAPVITSNAMLMKQCETLLSRLMLHQYAWVFNNPVDVEKLNIPD 240

Query: 239 YFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKY 298
           YFTVIKHPMDLGT+K KIT+G YS PLAFAADVRLTFSNAM YNPP NDVH MA+TL KY
Sbjct: 241 YFTVIKHPMDLGTVKSKITTGAYSSPLAFAADVRLTFSNAMKYNPPGNDVHFMAETLSKY 300

Query: 299 FEVRWKAIEKKLPVTVDMTAVPSRADDMIETETRMGMPPMKKKKVSPKETKIKAEPVRRV 358
           FEVRWKAIEKKLPVT+    V  RA   +ETET++   P KKKK++  ++ +K EP R+V
Sbjct: 301 FEVRWKAIEKKLPVTIGAEPVAPRAGIHVETETKIDPTPAKKKKIAQIDSMVKLEPFRQV 360

Query: 359 MTNEEKRILSTELEALLEELPESIIDFLKEHSAG--ETGEDELEIDIDALSDDTLFALRK 416
           M+NEEK  LSTELEALL ELPE+IIDFLKEHS    + GE E+EIDID LSDDTLF LRK
Sbjct: 361 MSNEEKLKLSTELEALLSELPETIIDFLKEHSHNDDQNGEVEIEIDIDTLSDDTLFELRK 420

Query: 417 LLDDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDPPVTDI 476
           LLDDYLLEK++ QA   P EME+LNESG SNSS Q CKGN+ VDED+DI+G NDPPV+  
Sbjct: 421 LLDDYLLEKRKNQAKAEPSEMELLNESGFSNSSWQPCKGNEPVDEDIDILGENDPPVSSY 480

Query: 477 PPVAIEKDAANRNSKCSSSSSSSSESGSSSSDSDSGSSSGSEPDAAKASVPANAVEENLV 536
           PPV IEKDAA++NSKCSSSSSSSSESGSSS       +SG E DAAKASVP    +  L 
Sbjct: 481 PPVEIEKDAAHKNSKCSSSSSSSSESGSSSD-DSDSDNSGGESDAAKASVPYTVTKVYLD 539

Query: 537 SGANLDEKKSEGVPDIGNSSVNSLDQVELNSQGKPVAIVADGHHEGESAPSERQVSPDKL 596
           +   L+             S N L ++E NSQG+P+ +  DGH EGE+AP +RQVSPDKL
Sbjct: 540 NAIVLE-------------SANGLAKIESNSQGEPLNVETDGHQEGENAPPDRQVSPDKL 586

Query: 597 YRAALLRNRFADTILKAREKALEK 620
           YRAA+LRNRFADTILKAREKALEK
Sbjct: 587 YRAAILRNRFADTILKAREKALEK 610

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491054|ref|XP_002279401.2| PREDICTED: LOW QUALITY PROTEIN: transcription factor GTE10-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224136059|ref|XP_002322229.1| global transcription factor group [Populus trichocarpa] gi|222869225|gb|EEF06356.1| global transcription factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356516581|ref|XP_003526972.1| PREDICTED: transcription factor GTE10-like [Glycine max] Back     alignment and taxonomy information
>gi|356508786|ref|XP_003523135.1| PREDICTED: transcription factor GTE10-like [Glycine max] Back     alignment and taxonomy information
>gi|297734375|emb|CBI15622.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440580|ref|XP_004138062.1| PREDICTED: transcription factor GTE10-like [Cucumis sativus] gi|449501388|ref|XP_004161353.1| PREDICTED: transcription factor GTE10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356513665|ref|XP_003525531.1| PREDICTED: transcription factor GTE8-like [Glycine max] Back     alignment and taxonomy information
>gi|296090258|emb|CBI40077.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488601|ref|XP_002270843.2| PREDICTED: transcription factor GTE8-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query624
TAIR|locus:2158564 1061 NPX1 "nuclear protein X1" [Ara 0.875 0.514 0.438 1.7e-107
TAIR|locus:2086498 813 GTE8 "AT3G27260" [Arabidopsis 0.681 0.522 0.451 2.5e-102
TAIR|locus:2082289620 BET10 "AT3G01770" [Arabidopsis 0.509 0.512 0.458 1.4e-90
TAIR|locus:2155715590 GTE7 "AT5G65630" [Arabidopsis 0.383 0.405 0.334 2.2e-36
TAIR|locus:2032692461 GTE3 "AT1G73150" [Arabidopsis 0.253 0.342 0.434 4.9e-36
TAIR|locus:2030958487 AT1G17790 "AT1G17790" [Arabido 0.227 0.291 0.440 3.2e-32
TAIR|locus:2038565766 GTE4 "AT1G06230" [Arabidopsis 0.201 0.164 0.515 9.3e-32
TAIR|locus:2142305494 AT5G46550 "AT5G46550" [Arabido 0.203 0.257 0.476 8.6e-28
TAIR|locus:2044722386 IMB1 "AT2G34900" [Arabidopsis 0.384 0.621 0.305 1.5e-23
MGI|MGI:1888520 1400 Brd4 "bromodomain containing 4 0.258 0.115 0.375 4.4e-20
TAIR|locus:2158564 NPX1 "nuclear protein X1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 249/568 (43%), Positives = 328/568 (57%)

Query:    61 VDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQV 120
             V +E   SE S   KR+   LN  G DN GV  +VL+LSKMS++ER++L  KLK +L+QV
Sbjct:    29 VYSERMNSEASPPLKRRRFGLN--G-DNNGVSKEVLSLSKMSRSERKNLVHKLKMELQQV 85

Query:   121 RVLQKKVAXXXXXXXXXXXXDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQ 180
             R L KK+A            +  SC+DG +RP  E+    +  +  +GKKR P   +  +
Sbjct:    86 RDLSKKIASFSSDTVLLSPYNDHSCSDGPRRPPPENF---ATFVGSQGKKRPPVRSDKQR 142

Query:   181 TKKGNSGRLEPKKPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYF 240
              KKG S RL    P    S + A +MK+CE LL RL SH+ GW F TPVD + LNIPDYF
Sbjct:   143 NKKGPS-RLNV--PT---SYTVASVMKECETLLNRLWSHKSGWPFRTPVDPVMLNIPDYF 196

Query:   241 TVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFE 300
              VIKHPMDLGTI+ ++  G+YS PL FAADVRLTFSN++ YNPP N  H MA  + KYFE
Sbjct:   197 NVIKHPMDLGTIRSRLCKGEYSSPLDFAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFE 256

Query:   301 VRWKAIEKKLPVTVDMTAVPSRADDMIETETRXXXXXXXXXXXXXXXXXXXAEPVRRVMT 360
               WK+IEKK+P++     +P  +   +E+E                      EP + VMT
Sbjct:   257 SGWKSIEKKIPMSKP-PVIPLTSSASLESEIPFEVAPMRKKEAAMNDNKLRVEPAKLVMT 315

Query:   361 NEEKRIXXXXXXXXXXXXXXSIIDFLKEHSA--GETGEDELEIDIDALSDDTLFALRKLL 418
             + EK+                I D L+E S   G++GE E+EIDI+ALSD+ LF +RKLL
Sbjct:   316 DGEKKKLGQDLMALEEDFPQKIADLLREQSGSDGQSGEGEIEIDIEALSDEILFMVRKLL 375

Query:   419 DDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDPPVTDIPP 478
             DDYL EK++      PCEME++++SG SNS +Q  KG+  +DEDVDIVGGNDP V+  PP
Sbjct:   376 DDYLREKKKSMEKSEPCEMEIVHDSGFSNSPLQPSKGDLQIDEDVDIVGGNDPSVSSHPP 435

Query:   479 VAIEKDAANRNSKCXXXXXXXXXXXXXXXXXXXXXXXXXXPDAAKASVPANAVEENLVSG 538
             + IEKDAA RN++                            D+ KAS P +  EE    G
Sbjct:   436 LKIEKDAACRNNESSSSSSSSSESGSSSSDSDSCSSSGSETDSIKASKPTSR-EEKKQPG 494

Query:   539 ANLDEKKSEGVPD--IGNSSVNSLDQVELNSQGKPVAIVADGH-HEGESAPSERQVSPD- 594
               +D+K+ +   +  + N S+N LDQ+E     K   + A     + E+AP ERQ+SPD 
Sbjct:   495 VGIDKKEDDSNSEKIVVNDSLNELDQLEHTVGEKSTTMDAVVLVPDEETAPPERQISPDS 554

Query:   595 --KLYRAALLRNRFADTILKAREKALEK 620
               K YRAA L+NRFADTI+KAREKA  K
Sbjct:   555 PDKRYRAAFLKNRFADTIMKAREKAFTK 582
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0009409 "response to cold" evidence=IEP
GO:0009651 "response to salt stress" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA
GO:0051365 "cellular response to potassium ion starvation" evidence=IEP
GO:0010200 "response to chitin" evidence=RCA
TAIR|locus:2086498 GTE8 "AT3G27260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082289 BET10 "AT3G01770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155715 GTE7 "AT5G65630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032692 GTE3 "AT1G73150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030958 AT1G17790 "AT1G17790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038565 GTE4 "AT1G06230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142305 AT5G46550 "AT5G46550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044722 IMB1 "AT2G34900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1888520 Brd4 "bromodomain containing 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query624
cd0550699 cd05506, Bromo_plant1, Bromodomain, uncharacterize 3e-59
cd05498102 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik 2e-38
cd0436999 cd04369, Bromodomain, Bromodomain 8e-32
smart00297107 smart00297, BROMO, bromo domain 8e-31
cd05499102 cd05499, Bromo_BDF1_2_II, Bromodomain 1e-28
cd05509101 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s 5e-26
cd05500103 cd05500, Bromo_BDF1_2_I, Bromodomain 6e-25
cd05497107 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like 8e-25
pfam0043984 pfam00439, Bromodomain, Bromodomain 8e-23
cd0550397 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA 3e-22
cd05495108 cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub 6e-21
cd05504115 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o 5e-20
cd05496119 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I 9e-19
cd05502109 cd05502, Bromo_tif1_like, Bromodomain; tif1_like s 4e-18
cd0550597 cd05505, Bromo_WSTF_like, Bromodomain; Williams sy 3e-15
cd05515105 cd05515, Bromo_polybromo_V, Bromodomain, polybromo 7e-15
cd05511112 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf 6e-14
cd05510112 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s 9e-14
cd05528112 cd05528, Bromo_AAA, Bromodomain; sub-family co-occ 3e-12
cd0551298 cd05512, Bromo_brd1_like, Bromodomain; brd1_like s 2e-11
COG5076371 COG5076, COG5076, Transcription factor involved in 4e-11
cd0551398 cd05513, Bromo_brd7_like, Bromodomain, brd7_like s 1e-10
cd05520103 cd05520, Bromo_polybromo_III, Bromodomain, polybro 4e-10
cd05507104 cd05507, Bromo_brd8_like, Bromodomain, brd8_like s 4e-10
cd05521106 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in 8e-10
cd05517103 cd05517, Bromo_polybromo_II, Bromodomain, polybrom 1e-09
cd05522104 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i 1e-09
cd05529128 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe 1e-08
cd05518103 cd05518, Bromo_polybromo_IV, Bromodomain, polybrom 3e-08
cd05524113 cd05524, Bromo_polybromo_I, Bromodomain, polybromo 2e-07
cd05519103 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam 5e-07
cd05525106 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa 5e-07
cd05516107 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su 3e-06
cd05494114 cd05494, Bromodomain_1, Bromodomain; uncharacteriz 6e-06
cd05501102 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li 2e-04
cd0550899 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf 2e-04
>gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information 
 Score =  192 bits (491), Expect = 3e-59
 Identities = 65/99 (65%), Positives = 76/99 (76%)

Query: 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDP 264
           +MKQC  LL +LM H++GWVFN PVDV+ L +PDYF +IK PMDLGT+K K+  G+YS P
Sbjct: 1   VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSP 60

Query: 265 LAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
             FAADVRLTF+NAM YNPP NDVH MA  L K FE RW
Sbjct: 61  EEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETRW 99

Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99
>gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|197636 smart00297, BROMO, bromo domain Back     alignment and domain information
>gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain Back     alignment and domain information
>gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain Back     alignment and domain information
>gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily Back     alignment and domain information
>gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily Back     alignment and domain information
>gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V Back     alignment and domain information
>gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily Back     alignment and domain information
>gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily Back     alignment and domain information
>gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily Back     alignment and domain information
>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup Back     alignment and domain information
>gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III Back     alignment and domain information
>gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup Back     alignment and domain information
>gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II Back     alignment and domain information
>gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV Back     alignment and domain information
>gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I Back     alignment and domain information
>gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family Back     alignment and domain information
>gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>gnl|CDD|99926 cd05494, Bromodomain_1, Bromodomain; uncharacterized subfamily Back     alignment and domain information
>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily Back     alignment and domain information
>gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 624
KOG1474640 consensus Transcription initiation factor TFIID, s 100.0
cd05495108 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb 99.95
cd05496119 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub 99.95
cd05497107 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily 99.94
cd0550597 Bromo_WSTF_like Bromodomain; Williams syndrome tra 99.94
cd0550699 Bromo_plant1 Bromodomain, uncharacterized subfamil 99.93
cd0550397 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s 99.93
cd05498102 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil 99.93
cd05504115 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li 99.93
cd05507104 Bromo_brd8_like Bromodomain, brd8_like subgroup. I 99.93
cd05499102 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam 99.93
cd05500103 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami 99.93
cd05502109 Bromo_tif1_like Bromodomain; tif1_like subfamily. 99.92
cd05501102 Bromo_SP100C_like Bromodomain, SP100C_like subfami 99.92
cd05510112 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. 99.92
cd05509101 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. 99.92
cd0550899 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC 99.92
cd05516107 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s 99.91
cd0551398 Bromo_brd7_like Bromodomain, brd7_like subgroup. T 99.91
cd05528112 Bromo_AAA Bromodomain; sub-family co-occurring wit 99.91
cd0551298 Bromo_brd1_like Bromodomain; brd1_like subfamily. 99.91
cd05511112 Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum 99.9
cd05519103 Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci 99.89
cd05515105 Bromo_polybromo_V Bromodomain, polybromo repeat V. 99.89
cd05524113 Bromo_polybromo_I Bromodomain, polybromo repeat I. 99.89
cd05529128 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like 99.88
smart00297107 BROMO bromo domain. 99.88
cd05517103 Bromo_polybromo_II Bromodomain, polybromo repeat I 99.88
cd05525106 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 99.88
cd05520103 Bromo_polybromo_III Bromodomain, polybromo repeat 99.88
cd05518103 Bromo_polybromo_IV Bromodomain, polybromo repeat I 99.88
cd05522104 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l 99.85
cd0436999 Bromodomain Bromodomain. Bromodomains are found in 99.84
PF0043984 Bromodomain: Bromodomain; InterPro: IPR001487 Brom 99.84
cd05521106 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik 99.84
cd05492109 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family 99.83
cd05526110 Bromo_polybromo_VI Bromodomain, polybromo repeat V 99.75
COG5076371 Transcription factor involved in chromatin remodel 99.7
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 99.69
KOG1472720 consensus Histone acetyltransferase SAGA/ADA, cata 99.41
cd05494114 Bromodomain_1 Bromodomain; uncharacterized subfami 99.36
KOG09551051 consensus PHD finger protein BR140/LIN-49 [General 99.18
cd05491119 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, 98.95
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 98.95
KOG1827 629 consensus Chromatin remodeling complex RSC, subuni 98.83
KOG00081563 consensus Transcription initiation factor TFIID, s 98.77
KOG00081563 consensus Transcription initiation factor TFIID, s 98.74
KOG1474 640 consensus Transcription initiation factor TFIID, s 98.57
KOG1472720 consensus Histone acetyltransferase SAGA/ADA, cata 98.5
KOG1828418 consensus IRF-2-binding protein CELTIX-1, contains 97.98
KOG1828418 consensus IRF-2-binding protein CELTIX-1, contains 97.9
COG5076371 Transcription factor involved in chromatin remodel 96.55
cd05493131 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- 95.27
KOG06441113 consensus Uncharacterized conserved protein, conta 89.1
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 83.11
PF05110 1191 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 80.57
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3e-42  Score=392.21  Aligned_cols=377  Identities=33%  Similarity=0.447  Sum_probs=253.2

Q ss_pred             hhhhhhcccc-cCCCCCCCC-ccccccccccCCccccccccccCCCCcccCccceeeccCCCCHHHHHHHHHHHHHHHHH
Q 006949           42 YRHAVETMAE-SEGFGSSGR-VDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQ  119 (624)
Q Consensus        42 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~s~~~~~~~r~~~~~~~~~~~~f~v~~~~~~~s~~s~~e~~~L~~rl~~eLeq  119 (624)
                      +..+|.+++. +..+...+. |..--.+++....++..|......+...+.+...++++.+++..++++|+.||+.+|++
T Consensus        55 ~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (640)
T KOG1474|consen   55 CIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVRKLSERLKQELQQ  134 (640)
T ss_pred             hhhhccccccchhcccCCccchhhccccchhhcccccccccccccCCcccccccccCcCCCCchhhhhhhhhcccccccc
Confidence            3667777775 554444444 33333578888888999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccCcccCCCCCcCCCCCCCCCCCccCCCC-Cccc-cCC--CCCCCCCC-CCCCCCCCCCCCCCCCCC--
Q 006949          120 VRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGG-PSVV-LAP--KGKKRAPN-GRNGPQTKKGNSGRLEPK--  192 (624)
Q Consensus       120 vR~l~~ki~~~~~~~vlsp~~~~~s~~~~~~~~~~~~~~~-~s~~-~~~--~~kkr~~~-~~~~~~~kr~~~~r~~p~--  192 (624)
                      ||.+.++++.....-++++....... ..     ...+.. .... ...  .+..+... +....+...+ .....+.  
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  207 (640)
T KOG1474|consen  135 VRPLTKAVEFSPEPSVVSPVSPASQP-FK-----SKNGVKKVADTCVKSYKSKSEREPSPGQKREGTVAP-NSSRESGDS  207 (640)
T ss_pred             CCcccccccccccccccCCCCCcccc-cc-----cccchhhhhccccccccccCcCCCCccccccccccC-ccccccccc
Confidence            99999999722211123331100000 00     000000 0000 000  00000000 0000000000 0000000  


Q ss_pred             ---CCCCCCCCchHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHH
Q 006949          193 ---KPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAA  269 (624)
Q Consensus       193 ---k~~~~~~~~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~  269 (624)
                         ............+++.|..||.+||+|+++|+|+.|||++++++||||+||||||||+|||+||.++.|.++.+|++
T Consensus       208 ~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~  287 (640)
T KOG1474|consen  208 AAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAA  287 (640)
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHH
Confidence               22233445678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC---CCCCC-------CCC----------------CC
Q 006949          270 DVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVT---VDMTA-------VPS----------------RA  323 (624)
Q Consensus       270 DvrLIf~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~~~p~~---~~~e~-------~p~----------------~~  323 (624)
                      ||||||.||++||++|++||.||..|+++|+.+|+.+...+...   ...+.       .+.                ..
T Consensus       288 DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (640)
T KOG1474|consen  288 DVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESAS  367 (640)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhccccc
Confidence            99999999999999999999999999999999999865443210   00000       000                00


Q ss_pred             c------hhhHH------------------hhhcCCCCCc-cC----CC----CCc----------cccccccccccCCC
Q 006949          324 D------DMIET------------------ETRMGMPPMK-KK----KV----SPK----------ETKIKAEPVRRVMT  360 (624)
Q Consensus       324 ~------~~~e~------------------~~~~~~pp~k-kr----K~----sp~----------~~~~~~e~~kr~MT  360 (624)
                      .      ...++                  ....+.+..+ .+    +.    .+.          .........++.||
T Consensus       368 ~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t  447 (640)
T KOG1474|consen  368 EPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMT  447 (640)
T ss_pred             CcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhcccccccccccccc
Confidence            0      00000                  0000011000 00    00    000          00112334678899


Q ss_pred             HHHHHHHHHHHHh-hcccChHHHHHHHhh--hc-CCCCCCCeEEEEcCCCC-------------HHHHHHHHHHHHHHHH
Q 006949          361 NEEKRILSTELEA-LLEELPESIIDFLKE--HS-AGETGEDELEIDIDALS-------------DDTLFALRKLLDDYLL  423 (624)
Q Consensus       361 ~eEK~kLs~~I~~-Lp~E~l~~Iv~IIkk--~~-~~~~~~dEIEIDId~L~-------------~~TL~eL~ryV~~~L~  423 (624)
                      ..|+..|...+.. +++.++..|++|++.  .. .....+++|++|++.++             .+|+|++.++++.+-.
T Consensus       448 ~~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  527 (640)
T KOG1474|consen  448 APEKAKLKELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGSQSREPSSNPLEIETIRETLKLSTEREL  527 (640)
T ss_pred             ccccccchhhccCCCCCccccCcccccchhhhcccccccccchhhcccccccccccCCCcccchhhhhhccccchhhHHH
Confidence            9999999999999 488999999999933  44 67778999999999999             9999999999988844


Q ss_pred             Hh
Q 006949          424 EK  425 (624)
Q Consensus       424 ek  425 (624)
                      ..
T Consensus       528 ~~  529 (640)
T KOG1474|consen  528 EL  529 (640)
T ss_pred             HH
Confidence            33

>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily Back     alignment and domain information
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup Back     alignment and domain information
>cd05499 Bromo_BDF1_2_II Bromodomain Back     alignment and domain information
>cd05500 Bromo_BDF1_2_I Bromodomain Back     alignment and domain information
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily Back     alignment and domain information
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily Back     alignment and domain information
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily Back     alignment and domain information
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily Back     alignment and domain information
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup Back     alignment and domain information
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily Back     alignment and domain information
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily Back     alignment and domain information
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V Back     alignment and domain information
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I Back     alignment and domain information
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>smart00297 BROMO bromo domain Back     alignment and domain information
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II Back     alignment and domain information
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family Back     alignment and domain information
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III Back     alignment and domain information
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV Back     alignment and domain information
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd04369 Bromodomain Bromodomain Back     alignment and domain information
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] Back     alignment and domain information
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family Back     alignment and domain information
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query624
3jvl_A120 Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le 2e-20
2lsp_B128 Solution Structures Of Brd4 Second Bromodomain With 3e-20
2ouo_A130 Crystal Structure Of The Bromo Domain 2 In Human Br 3e-20
2dvv_A112 Crystal Structure Of The Second Bromodomain Of The 8e-20
3oni_A114 Crystal Structure Of The Second Bromodomain Of Huma 1e-19
2g4a_A116 Solution Structure Of A Bromodomain From Ring3 Prot 2e-19
2e7n_A117 Solution Structure Of The Second Bromodomain From H 5e-19
2oo1_A113 Crystal Structure Of The Bromo Domain 2 Of Human Br 6e-19
2i8n_A114 Solution Structure Of The Second Bromodomain Of Brd 7e-19
2wp1_A126 Structure Of Brdt Bromodomain 2 Bound To An Acetyla 1e-18
4don_A145 Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy 1e-16
3jvj_A131 Crystal Structure Of The Bromodomain 1 In Mouse Brd 2e-16
4a9e_A154 N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- 2e-16
2oss_A127 Crystal Structure Of The Bromo Domain 1 In Human Br 2e-16
4hbw_A127 Crystal Structure Of The First Bromodomain Of Human 2e-16
2ydw_A153 Crystal Structure Of The First Bromodomain Of Human 2e-16
3g0l_A117 Crystal Structure Of Human Bromodomain Adjacent To 3e-16
2dww_A114 Crystal Structure Of Bromodomain-Containing Protein 4e-16
2l5e_A128 Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt 6e-16
2nxb_A123 Crystal Structure Of Human Bromodomain Containing P 8e-16
2e7o_A112 Solution Structure Of The Bromodomain From Human Br 8e-16
2rfj_A119 Crystal Structure Of The Bromo Domain 1 In Human Br 1e-15
2yw5_A138 Solution Structure Of The Bromodomain From Human Br 1e-15
2wp2_A120 Structure Of Brdt Bromodomain Bd1 Bound To A Diacet 2e-14
2yyn_A135 Crystal Sturcture Of Human Bromodomain Protein Leng 4e-14
1x0j_A122 Crystal Structure Analysis Of The N-Terminal Bromod 7e-14
3aqa_A128 Crystal Structure Of The Human Brd2 Bd1 Bromodomain 9e-14
1jsp_B121 Nmr Structure Of Cbp Bromodomain In Complex With P5 1e-13
3dwy_A119 Crystal Structure Of The Bromodomain Of Human Crebb 1e-13
3i3j_A124 Crystal Structure Of The Bromodomain Of Human Ep300 2e-13
3o33_A184 Crystal Structure Of Trim24 Phd-Bromo In The Free S 3e-13
1e6i_A121 Bromodomain From Gcn5 Complexed With Acetylated H4 3e-12
3u5m_A207 Crystal Structure Of Trim33 Phd-Bromo In The Free S 7e-12
3q2e_A123 Crystal Structure Of The Second Bromodomain Of Huma 1e-11
3fkm_X166 Plasmodium Falciparum Bromodomain-Containing Protei 2e-11
3gg3_A119 Crystal Structure Of The Bromodomain Of Human Pcaf 2e-11
1n72_A118 Structure And Ligand Of A Histone Acetyltransferase 3e-11
3mb3_A135 Crystal Structure Of The Second Bromodomain Of Plec 9e-11
1f68_A103 Nmr Solution Structure Of The Bromodomain From Huma 3e-10
3d7c_A112 Crystal Structure Of The Bromodomain Of Human Gcn5, 5e-10
3qzv_A174 Crystal Structure Of Bptf Phd-Linker-Bromo In Compl 1e-09
2ri7_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 2e-09
3qzs_A115 Crystal Structure Of Bptf Bromo In Complex With His 2e-09
3uv2_A126 Crystal Structure Of The Bromodomain Of Human Nucle 2e-09
3qzt_A115 Crystal Structure Of Bptf Bromo In Complex With His 3e-09
2ktb_B121 Solution Structure Of The Second Bromodomain Of Hum 3e-09
3ljw_A120 Crystal Structure Of The Second Bromodomain Of Huma 3e-09
3hmf_A116 Crystal Structure Of The Second Bromodomain Of Huma 5e-09
2f6j_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 4e-08
3aad_A292 Structure Of The Histone Chaperone Cia/asf1-double 5e-08
3hme_A123 Crystal Structure Of Human Bromodomain Containing 9 6e-08
3uv5_A265 Crystal Structure Of The Tandem Bromodomains Of Hum 6e-08
1eqf_A280 Crystal Structure Of The Double Bromodomain Module 7e-08
3lxj_A136 Crystal Structure Of The Bromodomain Of Human Aaa D 1e-07
3uv4_A158 Crystal Structure Of The Second Bromodomain Of Huma 2e-07
3hmh_A155 Crystal Structure Of The Second Bromodomain Of Huma 6e-07
3nxb_A116 Crystal Structure Of The Bromodomain Of Human Cecr2 8e-07
2r10_A361 Structure Of An Acetylated Rsc4 Tandem Bromodomain 3e-06
2r0v_A346 Structure Of The Rsc4 Tandem Bromodomain Acetylated 3e-06
3dai_A130 Crystal Structure Of The Bromodomain Of The Human A 4e-06
3g0j_A124 Crystal Structure Of The Fifth Bromodomain Of Human 5e-06
2yqd_A120 Solution Structure Of The Fifth Bromodomain From Mo 7e-06
2dkw_A131 Solution Structure Of The Bromodomain Of Human Prot 1e-05
3tlp_A150 Crystal Structure Of The Fourth Bromodomain Of Huma 2e-05
2r0s_A285 Crystal Structure Of The Rsc4 Tandem Bromodomain Le 4e-05
3rcw_A135 Crystal Structure Of The Bromodomain Of Human Brd1 4e-05
2r0y_A311 Structure Of The Rsc4 Tandem Bromodomain In Complex 4e-05
2d9e_A121 Solution Structure Of The Bromodomain Of Peregrin L 7e-05
2i7k_A117 Solution Structure Of The Bromodomain Of Human Brd7 2e-04
3iu5_A116 Crystal Structure Of The First Bromodomain Of Human 3e-04
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 Back     alignment and structure 
Iteration: 1

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 196 GAASSSNAMLMKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTI 252
           GA  S  +  +K C  +L  + + +   + W F  PVDV  L + DY  +IKHPMD+ TI
Sbjct: 1   GAMGSKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTI 60
Query: 253 KCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
           K K+ S +Y D   F ADVRL FSN   YNPP ++V  MA  L+  FE+R+
Sbjct: 61  KSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 111
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K310ac Peptide Length = 128 Back     alignment and structure
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain Containing Protein 4 (Brd4) Length = 130 Back     alignment and structure
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 Back     alignment and structure
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 Back     alignment and structure
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 Back     alignment and structure
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 Back     alignment and structure
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 Back     alignment and structure
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 Back     alignment and structure
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 Back     alignment and structure
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 Back     alignment and structure
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 Back     alignment and structure
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 Back     alignment and structure
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 Back     alignment and structure
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 Back     alignment and structure
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 Back     alignment and structure
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 Back     alignment and structure
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4 Length = 114 Back     alignment and structure
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 Back     alignment and structure
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 Back     alignment and structure
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 Back     alignment and structure
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 Back     alignment and structure
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 Back     alignment and structure
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 Back     alignment and structure
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 Back     alignment and structure
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 Back     alignment and structure
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 Back     alignment and structure
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121 Back     alignment and structure
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119 Back     alignment and structure
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 Back     alignment and structure
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 Back     alignment and structure
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 Back     alignment and structure
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 Back     alignment and structure
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 Back     alignment and structure
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein Pf10_0328 Length = 166 Back     alignment and structure
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 Back     alignment and structure
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 Back     alignment and structure
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 Back     alignment and structure
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 Back     alignment and structure
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 Back     alignment and structure
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 Back     alignment and structure
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 Back     alignment and structure
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 Back     alignment and structure
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 Back     alignment and structure
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 Back     alignment and structure
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 Back     alignment and structure
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 Back     alignment and structure
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 Back     alignment and structure
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 Back     alignment and structure
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123 Back     alignment and structure
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 Back     alignment and structure
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 Back     alignment and structure
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136 Back     alignment and structure
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 Back     alignment and structure
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 Back     alignment and structure
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 Back     alignment and structure
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone Chimera Length = 361 Back     alignment and structure
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25 Length = 346 Back     alignment and structure
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2 Length = 130 Back     alignment and structure
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 124 Back     alignment and structure
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse Polybromo-1 Length = 120 Back     alignment and structure
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein Kiaa1240 Length = 131 Back     alignment and structure
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150 Back     alignment and structure
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain Length = 285 Back     alignment and structure
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135 Back     alignment and structure
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With An Acetylated H3 Peptide Length = 311 Back     alignment and structure
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121 Back     alignment and structure
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7 Protein Length = 117 Back     alignment and structure
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query624
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 1e-52
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 4e-51
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 2e-50
3p1f_A119 CREB-binding protein; structural genomics consorti 8e-50
3fkm_X166 Signaling protein; bromodomain, malaria, structura 1e-49
4alg_A154 Bromodomain-containing protein 2; signaling protei 2e-49
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 5e-49
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 7e-48
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 5e-47
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 3e-46
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 2e-45
3d7c_A112 General control of amino acid synthesis protein 5; 5e-44
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 7e-44
3nxb_A116 CAT eye syndrome critical region protein 2; struct 4e-43
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 6e-42
2d9e_A121 Peregrin; four-helix bundle, transcription activat 2e-41
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 2e-41
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 7e-40
3rcw_A135 Bromodomain-containing protein 1; transcription, s 1e-39
3uv4_A158 Second bromodomain of human transcription initiat 1e-38
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 4e-38
3dai_A130 ATPase family AAA domain-containing protein 2; anc 1e-37
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 5e-37
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 3e-36
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 1e-32
3aad_A292 Transcription initiation factor TFIID subunit 1; p 4e-35
3aad_A292 Transcription initiation factor TFIID subunit 1; p 2e-32
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 8e-35
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 2e-33
2grc_A129 Probable global transcription activator SNF2L4; br 2e-32
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 2e-31
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 3e-31
2dat_A123 Possible global transcription activator SNF2L2; br 5e-31
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 4e-29
2r0y_A311 Chromatin structure-remodeling complex protein RSC 2e-28
2r0y_A311 Chromatin structure-remodeling complex protein RSC 6e-21
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 7e-28
2r10_A361 Chromatin structure-remodeling complex protein RSC 1e-26
2r10_A361 Chromatin structure-remodeling complex protein RSC 2e-20
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 2e-21
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 3e-20
2jns_A90 Bromodomain-containing protein 4; ET-domain, struc 1e-16
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 9e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120 Back     alignment and structure
 Score =  175 bits (445), Expect = 1e-52
 Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 196 GAASSSNAMLMKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTI 252
           GA  S  +  +K C  +L  + + +   + W F  PVDV  L + DY  +IKHPMD+ TI
Sbjct: 1   GAMGSKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTI 60

Query: 253 KCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310
           K K+ S +Y D   F ADVRL FSN   YNPP ++V  MA  L+  FE+R+  +  + 
Sbjct: 61  KSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEP 118
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135 Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117 Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121 Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116 Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158 Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120 Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130 Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150 Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129 Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124 Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 90 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query624
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 99.95
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 99.95
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 99.95
3d7c_A112 General control of amino acid synthesis protein 5; 99.94
3fkm_X166 Signaling protein; bromodomain, malaria, structura 99.94
4alg_A154 Bromodomain-containing protein 2; signaling protei 99.94
3p1f_A119 CREB-binding protein; structural genomics consorti 99.94
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 99.94
2d9e_A121 Peregrin; four-helix bundle, transcription activat 99.94
2dat_A123 Possible global transcription activator SNF2L2; br 99.94
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 99.94
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 99.94
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 99.94
2grc_A129 Probable global transcription activator SNF2L4; br 99.94
3nxb_A116 CAT eye syndrome critical region protein 2; struct 99.94
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 99.94
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 99.94
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.93
3rcw_A135 Bromodomain-containing protein 1; transcription, s 99.93
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 99.93
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 99.93
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.93
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 99.93
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.93
3uv4_A158 Second bromodomain of human transcription initiat 99.91
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 99.91
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.91
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.91
3dai_A130 ATPase family AAA domain-containing protein 2; anc 99.9
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 99.89
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 99.89
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.89
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.89
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.88
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.87
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.85
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.83
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.83
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.79
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.77
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.75
2jns_A90 Bromodomain-containing protein 4; ET-domain, struc 99.6
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 99.47
2lm0_A125 AF4/FMR2 family member 1/protein AF-9 chimera; int 94.55
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Back     alignment and structure
Probab=99.95  E-value=5.3e-28  Score=222.47  Aligned_cols=105  Identities=37%  Similarity=0.688  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 006949          202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY  281 (624)
Q Consensus       202 ~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y  281 (624)
                      ..++...|..||+.|++|+.+|+|..|||+.++++||||++|++||||+||++||.+|.|.++.+|.+||+|||+||++|
T Consensus        19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y   98 (127)
T 2oss_A           19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY   98 (127)
T ss_dssp             CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46788889999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006949          282 NPPQNDVHIMADTLRKYFEVRWKAI  306 (624)
Q Consensus       282 N~~~S~V~~~A~~L~~~Fe~~~k~i  306 (624)
                      |+++|.||.+|..|++.|++.|+++
T Consensus        99 N~~~s~i~~~A~~L~~~f~~~~~~l  123 (127)
T 2oss_A           99 NKPGDDIVLMAEALEKLFLQKINEL  123 (127)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999998764
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Back     alignment and structure
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Back     alignment and structure
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 624
d3dwya1114 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { 2e-31
d1e6ia_111 a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c 8e-31
d3d7ca1102 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T 9e-31
d1eqfa1139 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain 1e-30
d1wuma1118 a.29.2.1 (A:715-832) P300/CAF histone acetyltransf 1e-28
d1eqfa2128 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain 2e-27
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: CREB-binding protein, CBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 2e-31
 Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 205 LMKQCENLLTRLMSHQ-FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSD 263
           L +     L  L         F  PVD   L IPDYF ++K+PMDL TIK K+ +GQY +
Sbjct: 7   LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQE 66

Query: 264 PLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310
           P  +  DV L F+NA  YN   + V+     L + FE     + + L
Sbjct: 67  PWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 113
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query624
d3d7ca1102 GCN5 {Human (Homo sapiens) [TaxId: 9606]} 99.94
d3dwya1114 CREB-binding protein, CBP {Human (Homo sapiens) [T 99.94
d1e6ia_111 GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.94
d1wuma1118 P300/CAF histone acetyltransferase bromodomain {Hu 99.93
d1eqfa1139 TAFII250 double bromodomain module {Human (Homo sa 99.93
d1eqfa2128 TAFII250 double bromodomain module {Human (Homo sa 99.91
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.4e-27  Score=207.01  Aligned_cols=100  Identities=34%  Similarity=0.610  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCC
Q 006949          204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP  283 (624)
Q Consensus       204 ~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~  283 (624)
                      ++...|..||..|++|+.+++|..||++.  .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+
T Consensus         2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~   79 (102)
T d3d7ca1           2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP   79 (102)
T ss_dssp             HHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCccCCCCChh--hCcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCC
Confidence            67899999999999999999999999965  8999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q 006949          284 PQNDVHIMADTLRKYFEVRWKA  305 (624)
Q Consensus       284 ~~S~V~~~A~~L~~~Fe~~~k~  305 (624)
                      ++|.+|.+|..|+++|+++|++
T Consensus        80 ~~s~~~~~A~~l~~~f~~~~ke  101 (102)
T d3d7ca1          80 PDSEYCRCASALEKFFYFKLKE  101 (102)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998864
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure