Citrus Sinensis ID: 006979

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620---
Protein Sequence
MAISLLSAITTLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELWSISCV
Secondary Structure (PSIPRED)
ccccHHHHHHHccccccccccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccEEEcccccEEEEEEcccccccEEEEEEccccccccEEcccccccccccccccccEEEEEEccEEEEEEcccccEEEEEcccccccccccccccccccEEEEcEEEcccccEEEEEEEccccccccccEEEEEEEcccccccccEEEEEccccEEcccccccccEEEEEEcccccccccccEEEEEEEcccccEEEEEEEccccccccccccccEEcccccEEEEEEccccEEEEEEEEEcccEEEEEcccccccccccccccccEEEEEEEcccccEEEEEEEEccEEEEEEEEcccccEEEcccccEEEEEEEEEccEEEEEEEccccccEEEEEEcccccEEEEEEEEEEccccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccEEEEEcccccccccccccHHHHHHHHcccEEEEcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHccccEEEEEEEEEccccHHHHHHcccccEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccccEEEcccEEEEccccHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccEEEEccccEEEEEccccccccEEEEEEcccccccEEEEccccccEEEEEEEcccccEEEcccEEEEEEccccEEEEEccccccccccccccccccccEEEEcEEEcccccEEEEEEEcccccccccEEEEEEEEcccccccccEEEEEcccccccccccccccEEEEEEEccccccccccEEEEEEEcccccccccEEEEcccccccccEEccccccccEEEEEEEcccccEEEEEEcccccccEEccccHHHcccccEEEccccccEccccccccEEEEEEEEcccEEEEEEEcccccEEEccccccccccEEccccEEEEEEcccccccEEEEEEcccccEEEEEccEEccccccccccHHHcccccEEEccccccccEEEEEEEccccccccccccccccEEEEEcccccccccccccccEEEEEcccEEEEEEEcccccccHHHHHHHHHHcccEEEHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHccccEEc
Coil and Loop (DISEMBL)
MAISLLSAITTLtrfsassssasinfKYIFSrrtvftaspkrqkqrgckimastspvpetysatqdkitapygswkspltadvvsgaskrlggtavdghgrliwlesrpteagrgvlvkepakagdepsditpkeyAVRTTAqeygggafrifgdtvifsnykdqrlykhsidskdssplpitpdygeplvsyadgifdprfnryvtvREDRRQDALNSTTEIVAIALngqniqepkvlvsgsdfyafprmdprgerMAWIewhhpnmpwdkaELWVGYISENGDVYKRVCvagfdptivesptepkwsskgelffvtdrknGFWNLHKWIESNNEVLAIYSldaefsrplwvfgiNSYEIIQSHGEKNLIACSYRQNGRSYLGILDdfghslslldipftdidnitlgndclfvegasgvepssvakvtlddhklkavdfkvvwssspdtlkyksyfslpeliefptevpgqkayayyyppsnpiyqaspeekppllvkshggptseaRGILNLSIQYWtsrgwafvdvnyggstgygREFRERLLGrwgivdvndccscatflvgsgkadekrlcitggsaggyTTLAALAFRDTFKAGASLYGVSIPVIISEelwsiscv
Flexible Loop (DISEMBL)
MAISLLSAITTltrfsassssasinfkyifsrrtvftaspkrqkqrgckimastspvpetySATQDKITapygswksplTADVVSGASKRlggtavdghgrliwlesrpteagrgvlvkepakagdepsditpkeYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKhsidskdssplpITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIalngqniqepkvlVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPtivesptepkwsskgELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVdfkvvwssspdtlKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFlvgsgkadekRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIpviiseelwsiscv
Low Complexity Region (SEG)
MAISLLSAITTLTRFsassssasINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELWSISCV
Disordered region (IsUnstruct)
******SAITTLTRF******ASINFKYIFSRRTVFT*******************************TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLE*****************************YAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH***********ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPP***************************RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELWSIS**
Disordered Region (DISOPRED)
********ITTLTRFSASSSSASINFKYIFSRRTV************************************YGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIY**SPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELWSISCV
Disordered Region (DISEMBL)
MAISLLSAITTLTRFSASSSSASINFKYIFSRRTVFT***********KIMASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELWSISCV
Disordered Region (DISPRO)
MAISLLSAITTLTRFSASSSSASINFKYIFSRRTVFTASPK*****************************P*GSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELWSISCV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAISLLSAITTLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELWSISCV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	623	2.2.26 [Sep-21-2011]
P34422	740	Dipeptidyl peptidase fami	no	no	0.242	0.204	0.312	1e-11
P39839	657	Uncharacterized peptidase	yes	no	0.234	0.222	0.309	2e-09
Q9YBQ2	582	Acylamino-acid-releasing	no	no	0.192	0.206	0.370	8e-07
P13676	732	Acylamino-acid-releasing	yes	no	0.192	0.163	0.304	6e-06
Q8R146	732	Acylamino-acid-releasing	yes	no	0.191	0.162	0.309	9e-06
P19205	732	Acylamino-acid-releasing	yes	no	0.191	0.162	0.317	2e-05
E9ED72	934	Probable dipeptidyl-amino	N/A	no	0.191	0.127	0.274	5e-05
Q12884	760	Seprase OS=Homo sapiens G	yes	no	0.194	0.159	0.312	6e-05
P13798	732	Acylamino-acid-releasing	no	no	0.179	0.153	0.304	7e-05
P80227	730	Acylamino-acid-releasing	no	no	0.221	0.189	0.301	7e-05

>sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 12/163 (7%)

Query: 450 DTLKYKSYFSLPELIEF--PTEVP-GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT 506
           D +  ++Y SLP        ++VP G + YA     +  +  A P++   ++V  HGGP 
Sbjct: 389 DEMTIQAYLSLPPQAPLLKSSQVPDGDRPYA-----NLGMIPAVPQK---MIVLVHGGPK 440

Query: 507 SEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV 566
           +      +    + T+RG++ + VN+ GSTG+G+       G WG     D      F V
Sbjct: 441 ARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHFDILDAVEFAV 500

Query: 567 GSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVS 608
             G A+   + + GGS GGY TL AL F   TF  G  + G S
Sbjct: 501 SKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPS 543

Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration.
Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 4EC: .EC: 1EC: 4EC: .EC: -

>sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 6/152 (3%)

Query: 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSI 517
            S+PE I++ TE  G     +   P+    Q   E   PL++  HGGP            
Sbjct: 398 ISIPEEIQYATE-DGVMVNGWLMRPA----QMEGETTYPLILNIHGGPHMMYGHTYFHEF 452

Query: 518 QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRL 576
           Q   ++G+A V +N  GS GYG+EF   + G +G  D +D        +      D KRL
Sbjct: 453 QVLAAKGYAVVYINPRGSHGYGQEFVNAVRGDYGGKDYDDVMQAVDEAIKRDPHIDPKRL 512

Query: 577 CITGGSAGGYTTLAALAFRDTFKAGASLYGVS 608
            +TGGS GG+ T   +   + FKA  +   +S
Sbjct: 513 GVTGGSYGGFMTNWIVGQTNRFKAAVTQRSIS 544

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9YBQ2|APEH_AERPE Acylamino-acid-releasing enzyme OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_1547.1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 7/127 (5%)

Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
           P +V  HGGP +E     +       + G+  V  NY GSTGYG E+R +++G     ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420

Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
            D  + A +   SG A E  L I G S GGY TL AL  +   FKAG +  G S  V+  
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 474

Query: 615 EELWSIS 621
           EE++ +S
Sbjct: 475 EEMYELS 481

This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus.

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

>sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1

 Score = 53.1 bits (126), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536
           A    PSNP      + + P++V  HGGP S       L        G+A + VNY GST
Sbjct: 486 AILLQPSNP----PDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGST 541

Query: 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR 595
           G+G++    L G  G  DV D       ++     D +R+ + GGS GG+ +   +  + 
Sbjct: 542 GFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYP 601

Query: 596 DTFKA 600
           +T+ A
Sbjct: 602 ETYSA 606

This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

>sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3

 Score = 52.8 bits (125), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 7/126 (5%)

Query: 477 AYYYPPSNPIYQASPEE-KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535
           A    PSN     SP++ + P++V  HGGP S       L        G+A + VNY GS
Sbjct: 486 AILLQPSN-----SPDKSQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGS 540

Query: 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F 594
           TG+G++    L G  G  DV D       ++     D +R+ + GGS GG+ +   +  +
Sbjct: 541 TGFGQDSILSLPGNVGHQDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQY 600

Query: 595 RDTFKA 600
            +T+ A
Sbjct: 601 PETYSA 606

This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

>sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 7/126 (5%)

Query: 477 AYYYPPSNPIYQASPEE-KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535
           A    PSN     SPE+ + P++V  HGGP S       L        G+A + VNY GS
Sbjct: 486 AILLQPSN-----SPEKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGS 540

Query: 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F 594
           TG+G++    L G  G  DV D       ++     D  R+ + GGS GG+ +   +  +
Sbjct: 541 TGFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQY 600

Query: 595 RDTFKA 600
            +T+ A
Sbjct: 601 PETYSA 606

This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

>sp|E9ED72|DAPB_METAQ Probable dipeptidyl-aminopeptidase B OS=Metarhizium acridum (strain CQMa 102) GN=DAPB PE=3 SV=1

 Score = 50.1 bits (118), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 490 SPEEKPPLLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL 546
           +P++K P+L + + GP S+    +  +N      +S G+  V ++  G+   GR+ R  +
Sbjct: 664 NPKKKYPILFQQYSGPKSQTVTKKFAVNFQSYVASSLGYLVVTIDPRGTGFLGRQHRVVV 723

Query: 547 LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR--DTFKAGASL 604
             + G+++  D  + A         D  RL I G S GG+ TL  L     DTF  G ++
Sbjct: 724 RSQLGVLEAQDHIAAAKHYSSLPYVDPSRLAIWGWSYGGFQTLKTLEVDAGDTFSYGMAV 783

Query: 605 YGVS 608
             V+
Sbjct: 784 APVT 787

Type IV dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline.

Metarhizium acridum (strain CQMa 102) (taxid: 655827)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 4

EC: .

EC: 5

>sp|Q12884|SEPR_HUMAN Seprase OS=Homo sapiens GN=FAP PE=1 SV=5

 Score = 50.1 bits (118), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 4/125 (3%)

Query: 488 QASPEEKPPLLVKSHGGPTSEA-RGILNLS-IQYWTSR-GWAFVDVNYGGSTGYGREFRE 544
           Q    +K PLL++ +GGP S++ R +  ++ I Y  S+ G     V+  G+   G +   
Sbjct: 527 QFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLY 586

Query: 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-RDTFKAGAS 603
            +  + G+ +V D  +     +  G  DEKR+ I G S GGY +  ALA     FK G +
Sbjct: 587 AVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIA 646

Query: 604 LYGVS 608
           +  VS
Sbjct: 647 VAPVS 651

In association with DPP4 is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May have a role in tissue remodeling during development and wound healing, and may contribute to invasiveness in malignant cancers.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4

 Score = 49.7 bits (117), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 489 ASPEEKP--PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL 546
            SP +K   P++V  HGGP S       L        G+A + VNY GSTG+G++    L
Sbjct: 492 GSPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSL 551

Query: 547 LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKA 600
            G  G  DV D       ++     D   + + GGS GG+ +   +  + +T++A
Sbjct: 552 PGNVGHQDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRA 606

This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

>sp|P80227|ACPH_BOVIN Acylamino-acid-releasing enzyme OS=Bos taurus GN=APEH PE=1 SV=2

 Score = 49.7 bits (117), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 18/156 (11%)

Query: 482 PSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541
           PSNP      + + P++V  HGGP S       L        G+A + VNY GSTG+G++
Sbjct: 489 PSNP----PDKTQVPMVVMPHGGPHSSFVTSWMLLPAMLCKMGFAALLVNYRGSTGFGQD 544

Query: 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT----------TLAA 591
               L G  G  DV D       ++     D  R+ + GGS GG+           T  A
Sbjct: 545 SILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALLGGSHGGFLSCHLIGQYPETYGA 604

Query: 592 LAFRDTFKAGASLYG-VSIP---VIISEELWSISCV 623
              R+     AS+ G   IP   V+ +  L+S  C+
Sbjct: 605 CVVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCL 640

This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	623
255538410	731	acylamino-acid-releasing enzyme, putativ	0.963	0.820	0.727	0.0
225458521	675	PREDICTED: uncharacterized protein LOC10	0.884	0.816	0.788	0.0
224067282	672	predicted protein [Populus trichocarpa]	0.878	0.813	0.783	0.0
225458519	677	PREDICTED: uncharacterized protein LOC10	0.878	0.807	0.782	0.0
356527044	681	PREDICTED: uncharacterized protein LOC10	0.892	0.816	0.765	0.0
357459569	732	Acyl-peptide hydrolase-like protein [Med	0.979	0.833	0.705	0.0
449446971	734	PREDICTED: uncharacterized protein LOC10	0.961	0.816	0.694	0.0
145358557	730	alpha/beta-hydrolase domain-containing p	0.873	0.745	0.752	0.0
9759033	678	acyl-peptide hydrolase-like [Arabidopsis	0.895	0.823	0.734	0.0
356567356	674	PREDICTED: uncharacterized protein LOC10	0.876	0.810	0.727	0.0

>gi|255538410|ref|XP_002510270.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] gi|223550971|gb|EEF52457.1| acylamino-acid-releasing enzyme, putative [Ricinus communis]

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/605 (72%), Positives = 509/605 (84%), Gaps = 5/605 (0%)

Query: 7   SAITTLTRFSASSSSASINFKYIFSRRTVFT-ASPKR--QKQRGCKIMASTSPVPETYSA 63
           S+  TLTR S   + +++ FK     R +    S KR  Q+Q   K MAS++  P   ++
Sbjct: 5   SSAITLTRLSYYHTCSTL-FKLSHQIRILTCPISRKRYQQRQHNYKTMASSTQ-PLESAS 62

Query: 64  TQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAK 123
            Q+   APYGSWKSP+TADVVSGASKRLGGTAVDG+GRL WLESRPTEAGR VLVKE  K
Sbjct: 63  KQETTAAPYGSWKSPITADVVSGASKRLGGTAVDGNGRLFWLESRPTEAGRSVLVKEADK 122

Query: 124 AGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPIT 183
            GD+ +DITPK+Y+VR+TAQEYGGGAF I GDTVIF+NYKDQRLYK S+DS+DS P+P+T
Sbjct: 123 QGDKTTDITPKDYSVRSTAQEYGGGAFTISGDTVIFANYKDQRLYKQSVDSRDSPPVPLT 182

Query: 184 PDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243
           PDYG P VSYADG+FD  FNR+VT+ EDRR  ++++ T IV + L+ +NIQEPKVL+SG+
Sbjct: 183 PDYGSPSVSYADGVFDSLFNRFVTIMEDRRLSSMDAVTTIVTVGLSDENIQEPKVLLSGN 242

Query: 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303
           DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGDVYKR+CVAG D  +VESP
Sbjct: 243 DFYAFPRIDPKGERIAWIEWGHPNMPWDKTELWVGYISENGDVYKRICVAGCDTAVVESP 302

Query: 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQ 363
           TEPKWSS GELFF+TDR++GFWNL+KW+ES NEV A+Y L AEFSRPLWVFG NSYE+IQ
Sbjct: 303 TEPKWSSTGELFFITDRRSGFWNLYKWVESVNEVQALYPLAAEFSRPLWVFGTNSYELIQ 362

Query: 364 SHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEP 423
           ++  K+LIACSYRQ GRSYLGILD    SLSLLDIPFTDIDNI+ GN+CL++EGAS V P
Sbjct: 363 NNEGKHLIACSYRQKGRSYLGILDYAESSLSLLDIPFTDIDNISSGNNCLYIEGASAVHP 422

Query: 424 SSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPS 483
            SVAK+ LDD   K  DFK+VWSSSPD+LKY SYFSLPE IEFPTEVPGQ AYAY+YPPS
Sbjct: 423 PSVAKLDLDDRGSKVADFKIVWSSSPDSLKYASYFSLPEFIEFPTEVPGQNAYAYFYPPS 482

Query: 484 NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543
           NP+YQASPEEKPPLL+KSHGGPT + RGILN SIQYWTSRGWAFVDVNYGGSTGYGRE+R
Sbjct: 483 NPMYQASPEEKPPLLLKSHGGPTGDTRGILNPSIQYWTSRGWAFVDVNYGGSTGYGREYR 542

Query: 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 603
           ERL+  WGI DVNDCCSCA FLV +GKAD +RLCITGGSAGGYTTLAALAF++TFKAGAS
Sbjct: 543 ERLIKNWGITDVNDCCSCAKFLVDTGKADGERLCITGGSAGGYTTLAALAFKETFKAGAS 602

Query: 604 LYGVS 608
           LYGV+
Sbjct: 603 LYGVA 607

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458521|ref|XP_002284264.1| PREDICTED: uncharacterized protein LOC100262703 [Vitis vinifera] gi|302142369|emb|CBI19572.3| unnamed protein product [Vitis vinifera]

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/558 (78%), Positives = 491/558 (87%), Gaps = 7/558 (1%)

Query: 51  MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
           MAST+       + +DK+TAP+GSWKSP+TADVVSGA KRLGGTAVD  GRLI+LESRPT
Sbjct: 1   MASTA-------SAEDKLTAPFGSWKSPITADVVSGAEKRLGGTAVDARGRLIFLESRPT 53

Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
           E+GR VLVKE  KAG+EP DITPKE++VRT AQEYGGGAF+I GDTVIFSNYKDQRLYK 
Sbjct: 54  ESGRSVLVKESGKAGEEPIDITPKEFSVRTVAQEYGGGAFKISGDTVIFSNYKDQRLYKQ 113

Query: 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230
           SI S+ SSP PITPDYG P V YADG+FD RF+R++TVREDRR+ +LN  T IVAI L  
Sbjct: 114 SISSEYSSPSPITPDYGGPAVCYADGVFDSRFDRFITVREDRRESSLNPITTIVAIDLRD 173

Query: 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 290
            NIQEPKVLV+G+DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGD+ KR 
Sbjct: 174 NNIQEPKVLVAGNDFYAFPRLDPKGERLAWIEWSHPNMPWDKTELWVGYISENGDICKRT 233

Query: 291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 350
           CVAGFDP ++ESPTEPKWSSKGELFF+TDRK+GFWNLH+WIESNNEV+A+YS+DAEF+RP
Sbjct: 234 CVAGFDPKLLESPTEPKWSSKGELFFITDRKSGFWNLHRWIESNNEVVAVYSMDAEFARP 293

Query: 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGN 410
           LW+FG+NSYE +QSHG+K LIACSYRQNGRSY+GILD    SLSLLD PFTDI+NIT G 
Sbjct: 294 LWIFGMNSYEFLQSHGQKELIACSYRQNGRSYIGILDAVQSSLSLLDTPFTDINNITSGT 353

Query: 411 DCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEV 470
           +  +VEGAS V P SVAKVTLDD K K VDFK++ SSSPD+ KYKSYFSLPE IEFPTEV
Sbjct: 354 EFFYVEGASTVHPLSVAKVTLDDQKSKVVDFKIIRSSSPDSSKYKSYFSLPEFIEFPTEV 413

Query: 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV 530
           PGQ AYAY+YPPSNPIYQA  EE+PPLL+KSHGGPTSE RGILNLSIQYWTSRGWAFVDV
Sbjct: 414 PGQNAYAYFYPPSNPIYQAGQEERPPLLLKSHGGPTSETRGILNLSIQYWTSRGWAFVDV 473

Query: 531 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA 590
           NYGGSTGYGRE+RERLLGRWGIVDVNDCCSCA FLV SGK D  RLCITGGSAGGYTTLA
Sbjct: 474 NYGGSTGYGREYRERLLGRWGIVDVNDCCSCARFLVESGKVDGDRLCITGGSAGGYTTLA 533

Query: 591 ALAFRDTFKAGASLYGVS 608
           ALAFR+TFKAGASLYGV+
Sbjct: 534 ALAFRETFKAGASLYGVA 551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067282|ref|XP_002302446.1| predicted protein [Populus trichocarpa] gi|222844172|gb|EEE81719.1| predicted protein [Populus trichocarpa]

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/559 (78%), Positives = 493/559 (88%), Gaps = 12/559 (2%)

Query: 51  MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
           MAS++ V +  +A QDKITAPYGSWKSP+TADVVSGASKRLGG AVD HG L W+ESRP+
Sbjct: 1   MASSTQVADA-TAKQDKITAPYGSWKSPITADVVSGASKRLGGIAVDDHGHLFWVESRPS 59

Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
           E+GR VLV+E  K G+EP+DITPKE+AVRTTAQEYGGGAF I  DTVI+SNYKDQRLYK 
Sbjct: 60  ESGRAVLVREADKPGEEPTDITPKEFAVRTTAQEYGGGAFTISADTVIYSNYKDQRLYKQ 119

Query: 171 SIDSK-DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229
           SI SK DSSP+P+TPDYG P+VSYADG+FD RFNR+VTV EDRR  + NSTT IVA+ L+
Sbjct: 120 SIKSKVDSSPVPLTPDYGGPVVSYADGVFDLRFNRFVTVMEDRRVSSTNSTTTIVAVGLS 179

Query: 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR 289
            ++IQEPKVLVSG+DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGDV+ R
Sbjct: 180 DKSIQEPKVLVSGNDFYAFPRIDPKGERIAWIEWGHPNMPWDKTELWVGYISENGDVHNR 239

Query: 290 VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349
           +CVAG DPT+VESPTEPKWSSKGELFF+TDRK+GFWNL+KWIES NEV AIYSLDAEFS 
Sbjct: 240 ICVAGCDPTLVESPTEPKWSSKGELFFITDRKSGFWNLYKWIESVNEVQAIYSLDAEFST 299

Query: 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLG 409
           PLW+FGINSYE+IQ++  KNLIACSYRQNGRS+LGILDD   SLSLLDIPFTDI+++T  
Sbjct: 300 PLWIFGINSYELIQNNEGKNLIACSYRQNGRSFLGILDDVQSSLSLLDIPFTDINHMTSW 359

Query: 410 NDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE 469
           N CL+VEGAS + PSSVAKV  D          ++WSSSPD+LKYKSYFSLPELIEFPTE
Sbjct: 360 NRCLYVEGASAIHPSSVAKVLQD----------IIWSSSPDSLKYKSYFSLPELIEFPTE 409

Query: 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 529
           VPGQ AYAY+YPPSNPIYQAS EEKPPLL+KSHGGPTSE RGILNLSIQYWTSRGWAFVD
Sbjct: 410 VPGQNAYAYFYPPSNPIYQASQEEKPPLLLKSHGGPTSETRGILNLSIQYWTSRGWAFVD 469

Query: 530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 589
           VNYGGSTGYGRE+RERLL +WGIVDVNDCCSC  FLV +GK D +RLCITGGSAGGYTTL
Sbjct: 470 VNYGGSTGYGREYRERLLNKWGIVDVNDCCSCGKFLVDNGKVDSERLCITGGSAGGYTTL 529

Query: 590 AALAFRDTFKAGASLYGVS 608
           AALAF++TFKAGASLYGV+
Sbjct: 530 AALAFKETFKAGASLYGVA 548

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458519|ref|XP_002284254.1| PREDICTED: uncharacterized protein LOC100267853 [Vitis vinifera] gi|302142370|emb|CBI19573.3| unnamed protein product [Vitis vinifera]

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/547 (78%), Positives = 482/547 (88%)

Query: 62  SATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEP 121
           +A+QDK+TAPYGSWKSP+TAD+VSGA KRLGGTAVDG GRLIWLE+RPTE+GRGVLVKE 
Sbjct: 7   AASQDKVTAPYGSWKSPITADIVSGADKRLGGTAVDGDGRLIWLETRPTESGRGVLVKES 66

Query: 122 AKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP 181
             AG EP DITPKE++VRT AQEYGGG F+I G T++FSNY DQRLYK SI S D SP+P
Sbjct: 67  ETAGGEPIDITPKEFSVRTVAQEYGGGDFKISGHTLLFSNYTDQRLYKQSISSGDPSPVP 126

Query: 182 ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241
           ITPDYGE  V YADGIFD RF+RYVTVRED R+ +LN +T IVAI L+  NIQEPKVLV 
Sbjct: 127 ITPDYGEQAVRYADGIFDSRFDRYVTVREDSRESSLNPSTTIVAIDLSDNNIQEPKVLVG 186

Query: 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301
           GSDFYAFPRMD +GER+AWIEW HPNMPWDKAELWVGYISENGD+ KR+CVAG DPT++E
Sbjct: 187 GSDFYAFPRMDSKGERIAWIEWSHPNMPWDKAELWVGYISENGDICKRICVAGCDPTLLE 246

Query: 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 361
           SPTEPKWSS+GELFF+TDRK+GFWNL++WIES+NEV+A+Y+LDAEFSRPLWVFGI+SYE 
Sbjct: 247 SPTEPKWSSRGELFFITDRKSGFWNLYRWIESSNEVVAVYALDAEFSRPLWVFGISSYEF 306

Query: 362 IQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGV 421
           +QS G+K LI CSYRQNGRSYLGILD     LS LDIPFTDI+NI+ G DC ++EGAS V
Sbjct: 307 LQSGGQKELIVCSYRQNGRSYLGILDVVNSLLSALDIPFTDINNISSGIDCFYIEGASAV 366

Query: 422 EPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYP 481
            P S+AKVTLDDHK +AV FK++WSSS D  +YKSYFSLPELIEFPTEVPGQ AYAY+YP
Sbjct: 367 HPLSLAKVTLDDHKSEAVGFKIIWSSSADISEYKSYFSLPELIEFPTEVPGQNAYAYFYP 426

Query: 482 PSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541
           PSNPIYQAS +EKPPLL++SHGGPT EA   LNLSIQYWTSRGWAFVDVNYGGSTGYGRE
Sbjct: 427 PSNPIYQASQDEKPPLLLESHGGPTDEAHQSLNLSIQYWTSRGWAFVDVNYGGSTGYGRE 486

Query: 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 601
           FRERLLGRWGIVDVNDCCSCA FLV SGK D KRLC TGGSAGG+TTLAALAF++ FKAG
Sbjct: 487 FRERLLGRWGIVDVNDCCSCAKFLVDSGKVDGKRLCATGGSAGGFTTLAALAFKEIFKAG 546

Query: 602 ASLYGVS 608
           ASLYG++
Sbjct: 547 ASLYGIA 553

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527044|ref|XP_003532124.1| PREDICTED: uncharacterized protein LOC100784480 [Glycine max]

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/559 (76%), Positives = 487/559 (87%), Gaps = 3/559 (0%)

Query: 51  MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
           MAS++    T  +  ++ITAPYGSWKSP+T DVVSGASKRLGGTAVDG GRLIWLESRP 
Sbjct: 1   MASSAAT--TIPSLSERITAPYGSWKSPITTDVVSGASKRLGGTAVDGRGRLIWLESRPA 58

Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
           E+GRGVLV EP   G E  DITPKE+ VRT AQEYGGGAF + GD V F+NYKDQRLYK 
Sbjct: 59  ESGRGVLVVEPENPGGEAVDITPKEFGVRTVAQEYGGGAFTVSGDVVFFANYKDQRLYKQ 118

Query: 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230
           SI S D  P+P+TPDYG P+VSYADGI D RFNR+++VREDR + + N TT IV+IAL  
Sbjct: 119 SISSLDVPPIPLTPDYGGPVVSYADGILDVRFNRFISVREDRCESSQNPTTTIVSIALGS 178

Query: 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 290
           ++ QEP+VLV GSDFYAFPR+DP+ ERMAWI+W HPNMPWDK+ELWVGYISENG++YKRV
Sbjct: 179 KDAQEPQVLVGGSDFYAFPRLDPKSERMAWIQWSHPNMPWDKSELWVGYISENGEIYKRV 238

Query: 291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 350
           CVAG +P++VESPTEPKWSS GELFF+TDR+NGFWNLHKWIES N+VL +YSL+AEF+RP
Sbjct: 239 CVAGNNPSLVESPTEPKWSSDGELFFITDRENGFWNLHKWIESENKVLPVYSLEAEFARP 298

Query: 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLSLLDIPFTDIDNITLG 409
           LW+FG+NSYE +QSH  KNLIACSYRQ G+SYLGI+DD  G  L++LDIPFTDIDNIT  
Sbjct: 299 LWIFGMNSYEFLQSHTRKNLIACSYRQQGKSYLGIIDDVKGSKLTVLDIPFTDIDNITSS 358

Query: 410 NDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE 469
           N+ LFVEGAS V PSSVAKVTLD+ K KAVDF ++WSSSPD+LKY SYFS PELIEFPTE
Sbjct: 359 NNYLFVEGASAVHPSSVAKVTLDNDKSKAVDFNIIWSSSPDSLKYSSYFSKPELIEFPTE 418

Query: 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 529
           VPGQ AYAY+YPP+NP +QAS EEKPPLL+KSHGGPT+E RGILNLSIQYWTSRGWAFVD
Sbjct: 419 VPGQNAYAYFYPPTNPDFQASEEEKPPLLLKSHGGPTAETRGILNLSIQYWTSRGWAFVD 478

Query: 530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 589
           VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT+LV SGK D +RLCITGGSAGGYTTL
Sbjct: 479 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATYLVNSGKVDGERLCITGGSAGGYTTL 538

Query: 590 AALAFRDTFKAGASLYGVS 608
           AALAF++TFKAGASLYGV+
Sbjct: 539 AALAFKETFKAGASLYGVA 557

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459569|ref|XP_003600065.1| Acyl-peptide hydrolase-like protein [Medicago truncatula] gi|355489113|gb|AES70316.1| Acyl-peptide hydrolase-like protein [Medicago truncatula]

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/622 (70%), Positives = 507/622 (81%), Gaps = 12/622 (1%)

Query: 1   MAISLLSAIT--TLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVP 58
           MA    SA+T  TLTR S+SSS  S   K +F+    F++    Q+ R C    ST+   
Sbjct: 1   MATLASSALTLITLTRSSSSSSHYS---KCLFNH---FSSKTHHQRSRFCSFNTSTTKTM 54

Query: 59  ETYS--ATQDKIT-APYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRG 115
            +Y+  +  D IT APYGSWKSP+TADVVSGASKRLGGTAVDG GRLIWLESRPTE+GR 
Sbjct: 55  ASYTPPSESDTITTAPYGSWKSPITADVVSGASKRLGGTAVDGRGRLIWLESRPTESGRA 114

Query: 116 VLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSK 175
           VLV EP   G E  DITPKE+ VRT AQEYGGGAF + GD V F+NYKDQRLYK SI S 
Sbjct: 115 VLVLEPENPGGEAVDITPKEFGVRTLAQEYGGGAFTVAGDVVFFANYKDQRLYKQSITSL 174

Query: 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235
           D  P+P+TPDYG P+VSYADG+ D RFNR++ VREDRR+ + N  T IV+IAL  ++  E
Sbjct: 175 DVPPIPLTPDYGGPVVSYADGVLDTRFNRFIAVREDRRESSQNPPTTIVSIALGSKDDHE 234

Query: 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF 295
           P+VLV GSDFYAFPR+ P+ E++AWI+W HPNMPWDK+ELWVGYISENG++YKRVCVAG 
Sbjct: 235 PEVLVGGSDFYAFPRLGPKSEKIAWIQWSHPNMPWDKSELWVGYISENGEIYKRVCVAGN 294

Query: 296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFG 355
           DP++VESPTEPKWSS GELFF+TDR +GFWNLHKWIES N+ + +YSLDAEF+RPLWVFG
Sbjct: 295 DPSVVESPTEPKWSSDGELFFITDRGSGFWNLHKWIESENKAVPVYSLDAEFARPLWVFG 354

Query: 356 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLSLLDIPFTDIDNITLGNDCLF 414
           +NSYE ++S  ++NLIACSYRQ G SYLGI++D  G +LS+LDIPFTDIDNIT G DCLF
Sbjct: 355 MNSYEFVKSPKQRNLIACSYRQKGVSYLGIIEDAQGSNLSVLDIPFTDIDNITSGTDCLF 414

Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
           VEGAS V PSSVAKV LDD K K VDF ++WSSSPD+LKY SY S PELIEFPTEVPGQ 
Sbjct: 415 VEGASAVLPSSVAKVALDDKKSKVVDFNIIWSSSPDSLKYSSYISKPELIEFPTEVPGQN 474

Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
           AYAY+YPPSNP Y+A   EKPPLL+KSHGGPT+E  GILNLSIQYWTSRGWAF DVNYGG
Sbjct: 475 AYAYFYPPSNPTYRAIEGEKPPLLLKSHGGPTAETHGILNLSIQYWTSRGWAFADVNYGG 534

Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
           STGYGRE+R+RLLGRWGIVDVNDCCSCAT+LV SGK D +RLCITGGSAGGYTTLAALAF
Sbjct: 535 STGYGREYRDRLLGRWGIVDVNDCCSCATYLVDSGKVDGERLCITGGSAGGYTTLAALAF 594

Query: 595 RDTFKAGASLYGVSIPVIISEE 616
           +DTFKAGASLYGV+   ++ EE
Sbjct: 595 KDTFKAGASLYGVADLKLLVEE 616

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446971|ref|XP_004141243.1| PREDICTED: uncharacterized protein LOC101211004 [Cucumis sativus] gi|449498688|ref|XP_004160606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226296 [Cucumis sativus]

 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/608 (69%), Positives = 501/608 (82%), Gaps = 9/608 (1%)

Query: 8   AITTLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMA-------STSPVPET 60
           A+  L RF + SS    NF  + +R ++ T S ++Q +   K M        +T+  P  
Sbjct: 5   ALLRLFRFPSPSSLFISNFNPL-NRASINTLSTRKQFRSYNKTMTSSMSSSPNTTNDPPQ 63

Query: 61  YSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKE 120
            S    KITAPYGSW SP+TADVV+GASKRLGGTAV  +G LIWLESRPTE+GRGVLVKE
Sbjct: 64  LSDQLPKITAPYGSWSSPITADVVTGASKRLGGTAVTANGHLIWLESRPTESGRGVLVKE 123

Query: 121 PAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL 180
             K GDEP DITPKE++VR T QEYGGGAF + GD V+FSNY DQRLYK S++S D SP 
Sbjct: 124 SVKEGDEPCDITPKEFSVRNTTQEYGGGAFTVAGDIVVFSNYSDQRLYKQSLNS-DLSPQ 182

Query: 181 PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240
            +TPDYG   VSYADG+FD RFNR++TV+ED RQ +LN  T IV++ L+G++I EPKVLV
Sbjct: 183 ALTPDYGGRSVSYADGVFDSRFNRFITVQEDGRQSSLNPITTIVSVELDGKDINEPKVLV 242

Query: 241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300
            G+DFYAFPR+DP+GER+AWIEW HPNMPWDK+ELWVGY+SENG+VYKRVCVAG DP +V
Sbjct: 243 GGNDFYAFPRVDPKGERIAWIEWGHPNMPWDKSELWVGYLSENGEVYKRVCVAGGDPKLV 302

Query: 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYE 360
           ESPTEPKWS++GEL+F+TDR+ GFWNL+KW E+NNEV  IYSL AEFSRPLWVFG NSY+
Sbjct: 303 ESPTEPKWSAQGELYFITDRQTGFWNLYKWFEANNEVAPIYSLSAEFSRPLWVFGTNSYD 362

Query: 361 IIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASG 420
           ++++   +N+I CSYRQ GRSYLG+LD+   SLSLLDIPFTDI+NI LG+DC++VEG+SG
Sbjct: 363 LLKTGDGRNIIVCSYRQRGRSYLGVLDETQSSLSLLDIPFTDIENIALGSDCIYVEGSSG 422

Query: 421 VEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYY 480
           + PSS+AKVTL++  L+ V F ++WSSSPD LK+KSYFSLPE IEFPTEVPGQ AYAY+Y
Sbjct: 423 LHPSSIAKVTLNERSLEVVGFTIIWSSSPDILKFKSYFSLPEFIEFPTEVPGQNAYAYFY 482

Query: 481 PPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540
           PPSNP YQASP EKPPLL+KSHGGPT+E RG LN SIQYWTSRGW +VDVNYGGSTGYGR
Sbjct: 483 PPSNPKYQASPNEKPPLLLKSHGGPTAETRGNLNPSIQYWTSRGWGYVDVNYGGSTGYGR 542

Query: 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKA 600
           E+RERLL +WGIVDVNDCCSCA FLV SGK D ++LCITGGSAGGYTTLAALAFRDTFKA
Sbjct: 543 EYRERLLRQWGIVDVNDCCSCARFLVESGKVDGEQLCITGGSAGGYTTLAALAFRDTFKA 602

Query: 601 GASLYGVS 608
           GASLYG++
Sbjct: 603 GASLYGIA 610

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358557|ref|NP_198470.3| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gi|332006674|gb|AED94057.1| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/549 (75%), Positives = 471/549 (85%), Gaps = 5/549 (0%)

Query: 69  TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
           TAPYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP E+GRGVLV +    G+  
Sbjct: 69  TAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPNESGRGVLVLQ----GETS 124

Query: 129 SDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG 187
            DITPK++AVRT  QEYGGGAF+I  D T++FSNYKDQRLYK  I  KDSSP PITPDYG
Sbjct: 125 IDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYKQDITDKDSSPKPITPDYG 184

Query: 188 EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA 247
            P V+YADG+FD RFNRYVTVRED RQD  N  T IV + L+G+ ++EPKVLVSG+DFYA
Sbjct: 185 TPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLSGETLEEPKVLVSGNDFYA 244

Query: 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307
           FPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++ KRVCVAG DP  VESPTEPK
Sbjct: 245 FPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNIDKRVCVAGCDPKYVESPTEPK 304

Query: 308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGE 367
           WSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF++PLW+FG NSYEII+   E
Sbjct: 305 WSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEFAKPLWIFGTNSYEIIECSEE 364

Query: 368 KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVA 427
           KNLIACSYRQ G+SYLGI+DD   S SLLDIP TD D+ITLGN CL+VEGAS V P SVA
Sbjct: 365 KNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSITLGNQCLYVEGASAVLPPSVA 424

Query: 428 KVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIY 487
           +VTLD HK KA+  ++VWSSSPD LKYK+YFS+PELIEFPTEVPGQ AYAY+YPP+NP+Y
Sbjct: 425 RVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFPTEVPGQNAYAYFYPPTNPLY 484

Query: 488 QASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 547
            AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAFVDVNYGGSTGYGRE+RERLL
Sbjct: 485 NASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVDVNYGGSTGYGREYRERLL 544

Query: 548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGV 607
            +WGIVDV+DCC CA +LV SGKAD KRLCI+GGSAGGYTTLA+LAFRD FKAGASLYGV
Sbjct: 545 RQWGIVDVDDCCGCAKYLVSSGKADVKRLCISGGSAGGYTTLASLAFRDVFKAGASLYGV 604

Query: 608 SIPVIISEE 616
           +   ++ EE
Sbjct: 605 ADLKMLKEE 613

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759033|dbj|BAB09360.1| acyl-peptide hydrolase-like [Arabidopsis thaliana]

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/569 (73%), Positives = 479/569 (84%), Gaps = 11/569 (1%)

Query: 51  MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
           M+S+SP     +A     TAPYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP 
Sbjct: 1   MSSSSPD----AAQTPLTTAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPN 56

Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYK 169
           E+GRGVLV +    G+   DITPK++AVRT  QEYGGGAF+I  D T++FSNYKDQRLYK
Sbjct: 57  ESGRGVLVLQ----GETSIDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYK 112

Query: 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229
             I  KDSSP PITPDYG P V+YADG+FD RFNRYVTVRED RQD  N  T IV + L+
Sbjct: 113 QDITDKDSSPKPITPDYGTPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLS 172

Query: 230 GQNIQ--EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY 287
           G+ ++  EPKVLVSG+DFYAFPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++ 
Sbjct: 173 GETLEDPEPKVLVSGNDFYAFPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNID 232

Query: 288 KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF 347
           KRVCVAG DP  VESPTEPKWSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF
Sbjct: 233 KRVCVAGCDPKYVESPTEPKWSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEF 292

Query: 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNIT 407
           ++PLW+FG NSYEII+   EKNLIACSYRQ G+SYLGI+DD   S SLLDIP TD D+IT
Sbjct: 293 AKPLWIFGTNSYEIIECSEEKNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSIT 352

Query: 408 LGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFP 467
           LGN CL+VEGAS V P SVA+VTLD HK KA+  ++VWSSSPD LKYK+YFS+PELIEFP
Sbjct: 353 LGNQCLYVEGASAVLPPSVARVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFP 412

Query: 468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAF 527
           TEVPGQ AYAY+YPP+NP+Y AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAF
Sbjct: 413 TEVPGQNAYAYFYPPTNPLYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAF 472

Query: 528 VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587
           VDVNYGGSTGYGRE+RERLL +WGIVDV+DCC CA +LV SGKAD KRLCI+GGSAGGYT
Sbjct: 473 VDVNYGGSTGYGREYRERLLRQWGIVDVDDCCGCAKYLVSSGKADVKRLCISGGSAGGYT 532

Query: 588 TLAALAFRDTFKAGASLYGVSIPVIISEE 616
           TLA+LAFRD FKAGASLYGV+   ++ EE
Sbjct: 533 TLASLAFRDVFKAGASLYGVADLKMLKEE 561

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567356|ref|XP_003551887.1| PREDICTED: uncharacterized protein LOC100794040 [Glycine max]

 Score =  856 bits (2212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/546 (72%), Positives = 465/546 (85%)

Query: 63  ATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPA 122
           +T    TAPYGSWKSP+T+D VSGA+K LGGT +DG GRLIWLE RPTE+GRGVLV EP 
Sbjct: 4   STATVTTAPYGSWKSPITSDDVSGATKDLGGTTIDGRGRLIWLEFRPTESGRGVLVLEPE 63

Query: 123 KAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPI 182
             G E  DITPKE+ VRT AQEYGGGAF + GD V F+NY DQRLYK SI S D  P+P+
Sbjct: 64  NNGGEAVDITPKEFGVRTLAQEYGGGAFTVSGDVVFFANYNDQRLYKQSISSLDVPPVPL 123

Query: 183 TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242
           TPDYG PLVSYADG  D RFNR+++VREDRR+ +LN  T IV+IAL  +++QEP+VLVSG
Sbjct: 124 TPDYGGPLVSYADGRLDARFNRFISVREDRRESSLNPPTTIVSIALGSKDLQEPEVLVSG 183

Query: 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302
           SDFYAFPR+D + ER+ WI+W+HP+MPWDK ELWVGYISENG++YKRVC+AG DP+ VES
Sbjct: 184 SDFYAFPRLDSKSERITWIQWNHPSMPWDKTELWVGYISENGEIYKRVCIAGNDPSRVES 243

Query: 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEII 362
           PTEPKWS  GELFFVTD++NGFWN+HKWIE  N+V+++YSL+AEF+RPLW +G+NSYE +
Sbjct: 244 PTEPKWSLDGELFFVTDKENGFWNIHKWIEFENKVVSVYSLEAEFTRPLWTYGMNSYEFV 303

Query: 363 QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVE 422
           +S  +KNLIACSYRQ+G+SYLGI+D  G  L+++D P TDI+NIT GNDCL+VEGAS V 
Sbjct: 304 ESSKQKNLIACSYRQHGKSYLGIIDVQGSKLTVIDFPCTDINNITSGNDCLYVEGASEVL 363

Query: 423 PSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPP 482
           PSSVAKVT DD K KAVDF ++WSSSPD+LKY SY S PE IEFPTEVPGQ AYAY+YPP
Sbjct: 364 PSSVAKVTFDDDKSKAVDFNIIWSSSPDSLKYSSYISKPEFIEFPTEVPGQNAYAYFYPP 423

Query: 483 SNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 542
           SNP +QAS EEKPPLL+KSHGGPT E RGILNLS+QYWTSRGWA VDVNYGGSTGYGR +
Sbjct: 424 SNPDFQASKEEKPPLLLKSHGGPTQETRGILNLSVQYWTSRGWAVVDVNYGGSTGYGRVY 483

Query: 543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGA 602
           RERLL +WGIVDVNDCCSCAT+LV SGK D++RLCI GGSAGGYTTLA LAFRDTF+AGA
Sbjct: 484 RERLLRQWGIVDVNDCCSCATYLVDSGKVDKERLCIMGGSAGGYTTLAVLAFRDTFQAGA 543

Query: 603 SLYGVS 608
           SLYG++
Sbjct: 544 SLYGIA 549

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	623
TAIR|locus:2183587	730	AT5G36210 [Arabidopsis thalian	0.979	0.835	0.691	6.2e-236
TIGR_CMR|CBU_1529	636	CBU_1529 "prolyl oligopeptidas	0.468	0.459	0.446	1.8e-62
DICTYBASE|DDB_G0288631	700	DDB_G0288631 "peptidase S9 fam	0.532	0.474	0.348	1.1e-54
UNIPROTKB|Q88A85	610	PSPTO_0508 "Uncharacterized pr	0.362	0.370	0.388	3.4e-47
WB|WBGene00001057	643	dpf-4 [Caenorhabditis elegans	0.577	0.559	0.336	7.9e-46
TIGR_CMR|SO_1686	678	SO_1686 "prolyl oligopeptidase	0.468	0.430	0.345	3.2e-38
TIGR_CMR|SO_A0048	642	SO_A0048 "periplasmic prolyl o	0.187	0.182	0.371	8.5e-13
TIGR_CMR|CPS_3511	638	CPS_3511 "prolyl oligopeptidas	0.417	0.407	0.269	1.8e-12
TIGR_CMR|SO_4618	645	SO_4618 "prolyl oligopeptidase	0.181	0.175	0.350	1.4e-11
TIGR_CMR|SO_4252	662	SO_4252 "prolyl oligopeptidase	0.219	0.206	0.340	2.4e-11

TAIR|locus:2183587 AT5G36210 [Arabidopsis thaliana (taxid:3702)]

 Score = 2275 (805.9 bits), Expect = 6.2e-236, P = 6.2e-236
 Identities = 428/619 (69%), Positives = 499/619 (80%)

Query:     1 MAISLLSAITTLTRFXXXXXXXXINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVPET 60
             MA+ LL+++  L  F               SR   F++S +R  +   K + S + +  +
Sbjct:     1 MALLLLTSLNHLVSFSLTRLPSSSAHNLFLSRS--FSSSIRRFNRFSLKPLRSFASMSSS 58

Query:    61 Y-SATQDKIT-APYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLV 118
                A Q  +T APYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP E+GRGVLV
Sbjct:    59 SPDAAQTPLTTAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPNESGRGVLV 118

Query:   119 KEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDS 177
              +    G+   DITPK++AVRT  QEYGGGAF+I  D T++FSNYKDQRLYK  I  KDS
Sbjct:   119 LQ----GETSIDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYKQDITDKDS 174

Query:   178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237
             SP PITPDYG P V+YADG+FD RFNRYVTVRED RQD  N  T IV + L+G+ ++EPK
Sbjct:   175 SPKPITPDYGTPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLSGETLEEPK 234

Query:   238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297
             VLVSG+DFYAFPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++ KRVCVAG DP
Sbjct:   235 VLVSGNDFYAFPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNIDKRVCVAGCDP 294

Query:   298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGIN 357
               VESPTEPKWSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF++PLW+FG N
Sbjct:   295 KYVESPTEPKWSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEFAKPLWIFGTN 354

Query:   358 SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEG 417
             SYEII+   EKNLIACSYRQ G+SYLGI+DD   S SLLDIP TD D+ITLGN CL+VEG
Sbjct:   355 SYEIIECSEEKNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSITLGNQCLYVEG 414

Query:   418 ASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYA 477
             AS V P SVA+VTLD HK KA+  ++VWSSSPD LKYK+YFS+PELIEFPTEVPGQ AYA
Sbjct:   415 ASAVLPPSVARVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFPTEVPGQNAYA 474

Query:   478 YYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537
             Y+YPP+NP+Y AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAFVDVNYGGSTG
Sbjct:   475 YFYPPTNPLYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVDVNYGGSTG 534

Query:   538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDT 597
             YGRE+RERLL +WGIVDV+DCC CA +LV SGKAD KRLCI+GGSAGGYTTLA+LAFRD 
Sbjct:   535 YGREYRERLLRQWGIVDVDDCCGCAKYLVSSGKADVKRLCISGGSAGGYTTLASLAFRDV 594

Query:   598 FKAGASLYGVSIPVIISEE 616
             FKAGASLYGV+   ++ EE
Sbjct:   595 FKAGASLYGVADLKMLKEE 613

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TIGR_CMR|CBU_1529 CBU_1529 "prolyl oligopeptidase family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 138/309 (44%), Positives = 193/309 (62%)

Query:   301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYE 360
             E  ++P++S +G L+F++D K+GF NL+ +   + +V ++  L+AE   P WVF + +Y+
Sbjct:   224 EFVSQPQFSPEGTLYFLSD-KSGFGNLYCY--EDGKVKSMCPLNAECDSPPWVFKLKTYD 280

Query:   361 IIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD-IDNITLGNDCLFVEGAS 419
              +    +KN +A      G+  LG+++D G   +  D+PFT  +  + +  D +   GA+
Sbjct:   281 FL----DKNRLAVIVNHKGKQTLGVIED-GR-YTAFDLPFTSFVPTLAVQRDQVIFIGAA 334

Query:   420 GVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYY 479
                P     V   D K K  +  +++ S P T+  K Y S PE IEFPT+  G+ AY +Y
Sbjct:   335 ---PDRFPAVVCYDSKNKRTE--ILYESVPLTID-KKYLSYPEAIEFPTD-EGKTAYGFY 387

Query:   480 YPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539
             YPP N  YQ    EKPPL+V SHGGPTS     LNL  Q+WTS G+A +DVNYGGSTGYG
Sbjct:   388 YPPCNGDYQPPENEKPPLIVISHGGPTSSTSTALNLKNQFWTSCGFAVLDVNYGGSTGYG 447

Query:   540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFK 599
             + +RERL GRWG+VDV DC + A +LV  GKAD KRL I GGSAGG+T  +AL F D F 
Sbjct:   448 KAYRERLKGRWGVVDVADCVNGAKYLVKIGKADPKRLIIRGGSAGGFTVFSALIFYDVFA 507

Query:   600 AGASLYGVS 608
             AG+S +GV+
Sbjct:   508 AGSSYFGVA 516

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

DICTYBASE|DDB_G0288631 DDB_G0288631 "peptidase S9 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 505 (182.8 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 128/367 (34%), Positives = 196/367 (53%)

Query:   258 MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 316
             +A+I W+ PNMPWD + + +  +  N ++       G++    ES   P W+   + L+F
Sbjct:   220 LAYIYWNFPNMPWDNSNVCIKDLKTN-EIIN--ISNGYE----ESVLNPIWNEFDDCLYF 272

Query:   317 VTDRKNGFWNLHKW-IESN--NEVLAIYSLD-AEFSRPLWVFGINSY------EIIQSHG 366
             ++D  NG+W +HK+ ++S   ++V++   +D  E   P+W FG + Y      ++I +  
Sbjct:   273 ISDL-NGYWTIHKYDLKSKKRSQVISSELIDFKEIGEPMWYFGRSYYGFITPSKLIAALA 331

Query:   367 EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSV 426
             +  L+  +   N    + I + F H  S++  P       +L    LF+ G+S V  S +
Sbjct:   332 DYGLVIFNIETNQVEQI-IRNQFSHVKSIVASP-------SLST-ALFIGGSSTVMFSPI 382

Query:   427 AKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG----QKAYAYYYPP 482
              K+  +    K  +FK + +         S  S P  IEF T        +KA+AYYYPP
Sbjct:   383 -KLNYNSDSKKC-EFKQLLNVKGGESITDSMISKPIEIEFNTSSKSDNLIEKAFAYYYPP 440

Query:   483 S-NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541
             +       +    PPLLVKSHGGPT  A  +LN   QYWTSRG+A +DVNY GS+G+G+ 
Sbjct:   441 TFKKDSSTTTTPPPPLLVKSHGGPTDRAYSVLNYEYQYWTSRGFAILDVNYRGSSGFGKR 500

Query:   542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 601
             +R+ L G WG+ D  D  + A  +V  G AD+ ++ I GGSAGG+ TL +L F D FK G
Sbjct:   501 YRKLLNGNWGLYDNADLVNAALHMVKMGLADKDKMFIDGGSAGGFATLCSLTFYDIFKGG 560

Query:   602 ASLYGVS 608
              S YGV+
Sbjct:   561 CSYYGVA 567

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q88A85 PSPTO_0508 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 417 (151.9 bits), Expect = 3.4e-47, Sum P(2) = 3.4e-47
 Identities = 94/242 (38%), Positives = 137/242 (56%)

Query:   374 SYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDD 433
             S+ Q+G   LG+    G S     + ++   ++ +  + ++   AS V  ++V  ++  D
Sbjct:   278 SWSQDGSGVLGLCQADG-STEDFSVGYSRFRSLAVDEEFVYCIAASAVSTAAVLAISRAD 336

Query:   434 HKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEE 493
             H +  +        SP   +     S P+ + +P+   G +AY Y+YP        +  +
Sbjct:   337 HSVHVL----AGGGSPLPAEL---ISRPQALCYPSG--GAEAYGYFYPAM------TGAQ 381

Query:   494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 553
             KPPL+V  HGGPTS    +L+  IQYWT RG+A  D+NY GS+GYGR +R+ L   WG+ 
Sbjct:   382 KPPLVVFIHGGPTSACYPVLDPRIQYWTHRGFAVADLNYRGSSGYGRAYRQGLHLTWGVA 441

Query:   554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVII 613
             DV D C+  T L   G  DE++  I GGSAGGYTTL ALAF D F+AGASLYGVS PV +
Sbjct:   442 DVQDACAVVTHLAERGLIDEQQAFIRGGSAGGYTTLCALAFEDVFRAGASLYGVSDPVAL 501

Query:   614 SE 615
             ++
Sbjct:   502 AK 503

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00001057 dpf-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 129/383 (33%), Positives = 197/383 (51%)

Query:   238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297
             V+  G+DFYA+PR+ P G+++ W++W  PNMPWD+  + +  + + G+    V +   D 
Sbjct:   161 VIAHGADFYAYPRVSPDGKKLVWMQWSLPNMPWDETSIRMADL-KGGESSNEVTLK--DG 217

Query:   298 TIVE-SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFG 355
             T  + + +EP W    EL  V D  N +WN++K     N V   +  +  E S PLW  G
Sbjct:   218 TGKQINYSEPTWDGD-ELLTVNDSTN-WWNVYKSAAEPNSVEKNLNPIQREISYPLWQLG 275

Query:   356 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFV 415
               +Y + + +   N     Y ++G   + I    G+++      +  +D    G+D LF 
Sbjct:   276 FRNYVLNKKYLVMNADGILYVRSGDVTVEIPTP-GYTV----FGYLSLDQN--GSD-LFA 327

Query:   416 EGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSY-FSLPELIEFPTEVPGQK 474
               +     SSV  + L +   K    KV    S D+ +  +   S PE  EF  +  G  
Sbjct:   328 IASGPKRASSVISIDLAN---KNFPLKV-HRESRDSSEIDALEISEPE--EFVFKSDGVD 381

Query:   475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
                Y+YPP N  Y A     PP+L+  HGGPT+ A+  L+L  Q++TSRG A  DVNY G
Sbjct:   382 VSGYFYPPKNCSYSAPAGTLPPVLLLGHGGPTAPAQNNLDLKKQFFTSRGIAVFDVNYRG 441

Query:   535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
             STG+G EFR  L    G+ D +D  + A  LV  GK D +++ ITG S+GGY  L+ L  
Sbjct:   442 STGFGTEFRRMLYKNCGVADRDDMLNGAKALVEQGKVDAEKVLITGSSSGGYLILSCLIS 501

Query:   595 -RDTFKAGASLYGVSIPVIISEE 616
              ++  KA  S+YGV+  + + E+
Sbjct:   502 PKNIIKAAVSVYGVADLLALDED 524

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TIGR_CMR|SO_1686 SO_1686 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 428 (155.7 bits), Expect = 3.2e-38, P = 3.2e-38
 Identities = 106/307 (34%), Positives = 161/307 (52%)

Query:   302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 361
             S  +P +   G+L+ V+D  N +WN+++ +  +  +  + S +AEF+ P W  G ++Y  
Sbjct:   256 SVAQPLFGPDGKLYVVSDISN-WWNIYR-VTPSYTLEPVLSKNAEFAVPDWRLGNHNYAF 313

Query:   362 IQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGV 421
                     LIA SY +  R+ L  +         L I F +I  +  G D ++  GA   
Sbjct:   314 ---ENATTLIA-SYVEGNRAALLRIHLDSELTESLAIDFAEITQVVKGEDGVYFVGAKAT 369

Query:   422 EPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYP 481
                 + +V     +L       V++ +   L   +Y S    I F T    Q+AY Y+Y 
Sbjct:   370 PEKGIYRVVGRGTEL-------VYAPALANLN-PNYVSRAINIAFATG-KDQQAYGYFYG 420

Query:   482 PSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541
             P NP Y    + +PPL+V  HGGPTS A       IQ+WTSRG+A +D+N+ GS+G+GR 
Sbjct:   421 PVNPKYVPPHDTRPPLIVMLHGGPTSRASLAYRSEIQFWTSRGFAVLDLNFRGSSGFGRA 480

Query:   542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 601
             +R+ L G+WG  DV D  + A +LV  G  D  +L I G SAGG T +++LAF + F+AG
Sbjct:   481 YRQSLYGKWGESDVEDAVNAAKYLVAKGWVDANKLAIRGISAGGLTVMSSLAFYNVFQAG 540

Query:   602 ASLYGVS 608
              S  G+S
Sbjct:   541 VSYEGIS 547

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|SO_A0048 SO_A0048 "periplasmic prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 203 (76.5 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 45/121 (37%), Positives = 65/121 (53%)

Query:   491 PEEKP---PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 547
             P++K    P ++  HGGP +      +  +Q   ++G+A V VN+ GSTGYG+ F E   
Sbjct:   407 PKDKKTNLPTVILPHGGPHARDYWGFDPLVQMLANQGFAVVQVNFRGSTGYGKNFEEAGY 466

Query:   548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL-AALAFRDTFKAGASLYG 606
             G+WG    +D      + +  G ADE R+CI G S GGY+ L +A  + DTFK      G
Sbjct:   467 GKWGTKIQDDIMLATQYAIQQGIADENRMCILGISFGGYSALQSATRYPDTFKCAIGYAG 526

Query:   607 V 607
             V
Sbjct:   527 V 527

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|CPS_3511 CPS_3511 "prolyl oligopeptidase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 200 (75.5 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 76/282 (26%), Positives = 128/282 (45%)

Query:   340 IYSLDAEFS--RPLWVFGINSYEIIQSHGEKNLIACSY-RQNGR-SYLGILDDFGHSLSL 395
             IYS D EF   +  W + + +     ++     +  +Y  +NGR   +G+  D    L +
Sbjct:   253 IYSTD-EFGEFKQAWAYDLKTKNKSLNYASDWDVRFTYFSENGRYQVIGVNADAQTKLQI 311

Query:   396 LDIPFT---DIDNITLGN--DCLFVEGASGVE---PSSVAKVTLDDHKLKAVDFKVVWSS 447
             +D+       + N+  G+     F   AS +     S  +   L  HKL +   K + ++
Sbjct:   312 IDLKTRLRLALPNLPGGDLRGVNFSADASQLVFYINSDTSPSNLYVHKLGSTGVKRLTNT 371

Query:   448 -SPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT 506
              +P+ L+        E++ F +   G       Y P    +      K P LV  HGGP 
Sbjct:   372 GNPNILEDNLVEG--EVVRFKS-FDGLDIPGILYKPKQAEFN-----KVPALVFIHGGPG 423

Query:   507 SEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV 566
              ++R   +  +Q+  + G+A   VN  GS+GYG+ F      + G  D+ D      +L 
Sbjct:   424 GQSRKGYSALVQHLVNNGYAIFKVNNRGSSGYGKTFFHLDDKKHGDHDLKDVVYNKYYLQ 483

Query:   567 GSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVS 608
                  D+ R+ + GGS GGY T+AA+AF D F+AG +++GV+
Sbjct:   484 SLDWVDKDRIGVIGGSYGGYLTMAAMAFTDEFQAGVNIFGVT 525

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|SO_4618 SO_4618 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 192 (72.6 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 40/114 (35%), Positives = 60/114 (52%)

Query:   496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
             P ++  HGGP S      +   Q++ +RG+A   +N+ GS GYG EF +  L  WG+   
Sbjct:   420 PTIIFPHGGPISYDSNDFDYWAQFFANRGYAVFRMNFRGSAGYGYEFMKAGLKSWGLEMQ 479

Query:   556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVS 608
             ND      +L+  G +D +R+CI G S GGY  L   A   D ++   S+ GV+
Sbjct:   480 NDVEDGTRYLINQGISDPQRICIVGASYGGYAALMGAAMTPDLYRCAVSVAGVT 533

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|SO_4252 SO_4252 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 183 (69.5 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 50/147 (34%), Positives = 69/147 (46%)

Query:   464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS--EARGILNLSIQYWT 521
             I F T   GQK + Y   P    Y     +  PL+V  HGGP    +  G  +   Q   
Sbjct:   409 ISF-TNRDGQKIHGYLTLP----Y-GKEAKNLPLVVNPHGGPHGIRDWWGF-DPQNQLLA 461

Query:   522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
               G A + VN+ GS GYG  F +    +WG    +D      +++G G  D++R+CI GG
Sbjct:   462 QNGMAVLQVNFRGSGGYGERFEQAGYQKWGSDIQHDIIDATQYVIGQGFVDKERICIAGG 521

Query:   582 SAGGYTTL-AALAFRDTFKAGASLYGV 607
             S GGY+ L +A+   D FK      GV
Sbjct:   522 SFGGYSALQSAVLAPDMFKCAVGFAGV 548

GO:0006508 "proteolysis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	623
COG1506	620	COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin	8e-42
pfam00326	212	pfam00326, Peptidase_S9, Prolyl oligopeptidase fam	8e-25
pfam05448	319	pfam05448, AXE1, Acetyl xylan esterase (AXE1)	9e-04
COG1505	648	COG1505, COG1505, Serine proteases of the peptidas	0.003
COG3458	321	COG3458, COG3458, Acetyl esterase (deacetylase) [S	0.004

>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

 Score =  160 bits (405), Expect = 8e-42
 Identities = 87/376 (23%), Positives = 139/376 (36%), Gaps = 29/376 (7%)

Query: 235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG 294
           +   L  G+        D  G  +A I       PW         I  NG++        
Sbjct: 159 KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPW--VTNLYVLIEGNGELESLT-PGE 215

Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
              + +    + K      +  +    +       +I      L +     E    L   
Sbjct: 216 GSISKLAFDADGKS-----IALLGTESDRGLAEGDFI------LLLDGELGEVDGDLSSG 264

Query: 355 G--INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDC 412
                ++ +        L+  +    G S L  +DD G  +  L      +    +    
Sbjct: 265 DDTRGAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRK 324

Query: 413 LFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG 472
           L +  +S  EP  +      +        +   +SS ++   K   + PE + + +   G
Sbjct: 325 LALAYSSPTEPPEIYLYDRGE--------EAKLTSSNNSGLKKVKLAEPEPVTYKSN-DG 375

Query: 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY 532
           +  + + Y P        P +K PL+V  HGGP+++     N  IQ   S G+A +  NY
Sbjct: 376 ETIHGWLYKPPGF----DPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNY 431

Query: 533 GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592
            GSTGYGREF + + G WG VD+ D  +    LV     D +R+ ITGGS GGY TL A 
Sbjct: 432 RGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAA 491

Query: 593 AFRDTFKAGASLYGVS 608
                FKA  ++ G  
Sbjct: 492 TKTPRFKAAVAVAGGV 507

Length = 620

>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family

 Score =  102 bits (256), Expect = 8e-25
 Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 517 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576
           +Q    RG+     N  GS GYGR + +   G  G  + +D  + A +L+  G  D  RL
Sbjct: 7   LQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYVDPDRL 66

Query: 577 CITGGSAGGYTTLAALAFR-DTFKAGASLYGVS 608
            I GGS GGY T AAL  R D FKA  ++  V 
Sbjct: 67  AIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVV 99

Length = 212

>gnl|CDD|203252 pfam05448, AXE1, Acetyl xylan esterase (AXE1)

 Score = 41.6 bits (98), Expect = 9e-04
 Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 34/192 (17%)

Query: 440 DFKVVWSSSPDTLKYKSYFSL-PELIEFPTEVPGQKAYAYYYPPSN--PIYQ-----ASP 491
           DF   W     TL+      L PEL     ++P  + Y   +       I          
Sbjct: 22  DFDEFWDR---TLEELRQVDLDPELEPADFQLPTVECYDLTFTGFGGARIKAWLVLPKHA 78

Query: 492 EEKPPLLVKSHG--GPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549
           E K P LV+ HG  G   +    L+     W + G+A   ++  G  G   +        
Sbjct: 79  EGKHPALVEFHGYNGGRGDWHDNLH-----WAAAGYAVFAMDVRGQGGGSEDPGGVTGPT 133

Query: 550 W------GIVDVN----------DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593
           +      G++D            D       ++   + DE+R+ + G S GG   LAA A
Sbjct: 134 YKGHITRGLLDGPDHYYYRRVFLDAVRAVEIVMSLPEVDEERIGVYGASQGGALALAAAA 193

Query: 594 FRDTFKAGASLY 605
                K   + Y
Sbjct: 194 LSPRIKKVVADY 205

This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan. Length = 319

>gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 5/137 (3%)

Query: 486 IYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544
           + + + +++ P L+ ++GG   S        S + W  RG  FV  N  G   +G E+ +
Sbjct: 412 VRKGAKKDENPTLLYAYGGFNISLTPRFSG-SRKLWLERGGVFVLANIRGGGEFGPEWHQ 470

Query: 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGAS 603
             +        +D  + A  L+  G    ++L I GGS GG    AAL  R + F  GA+
Sbjct: 471 AGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELF--GAA 528

Query: 604 LYGVSIPVIISEELWSI 620
           +  V +  ++   L + 
Sbjct: 529 VCEVPLLDMLRYHLLTA 545

Length = 648

>gnl|CDD|225989 COG3458, COG3458, Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 39/171 (22%), Positives = 59/171 (34%), Gaps = 31/171 (18%)

Query: 461 PELIEFPTEVPGQKAYAYYYPPSN--PIY-----QASPEEKPPLLVKSHG--GPTSEARG 511
           P L      +P  + Y   +       I          + K P +V+ HG  G   E   
Sbjct: 42  PVLERSDFTLPRVEVYDVTFTGYGGARIKGWLVLPRHEKGKLPAVVQFHGYGGRGGEWHD 101

Query: 512 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW-------GIVD---------- 554
           +L+     W   G+A   ++  G     ++  +   G         GI+D          
Sbjct: 102 MLH-----WAVAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGV 156

Query: 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY 605
             D       L    + DE+R+ +TGGS GG   LAA A     KA  + Y
Sbjct: 157 FLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKAVVADY 207

Length = 321

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	623
PRK10115	686	protease 2; Provisional	100.0
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	100.0
KOG2281	867	consensus Dipeptidyl aminopeptidases/acylaminoacyl	100.0
COG1770	682	PtrB Protease II [Amino acid transport and metabol	100.0
KOG2100	755	consensus Dipeptidyl aminopeptidase [Posttranslati	99.96
KOG2237	712	consensus Predicted serine protease [Posttranslati	99.94
COG1505	648	Serine proteases of the peptidase family S9A [Amin	99.92
PRK01029	428	tolB translocation protein TolB; Provisional	99.9
PRK05137	435	tolB translocation protein TolB; Provisional	99.89
PRK03629	429	tolB translocation protein TolB; Provisional	99.89
PRK04792	448	tolB translocation protein TolB; Provisional	99.88
PRK04043	419	tolB translocation protein TolB; Provisional	99.88
PRK01029	428	tolB translocation protein TolB; Provisional	99.87
PRK00178	430	tolB translocation protein TolB; Provisional	99.86
PRK04922	433	tolB translocation protein TolB; Provisional	99.86
PRK02889	427	tolB translocation protein TolB; Provisional	99.86
PRK04043	419	tolB translocation protein TolB; Provisional	99.85
PRK05137	435	tolB translocation protein TolB; Provisional	99.85
PRK03629	429	tolB translocation protein TolB; Provisional	99.84
PRK04792	448	tolB translocation protein TolB; Provisional	99.84
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.83
PRK00178	430	tolB translocation protein TolB; Provisional	99.83
PRK02889	427	tolB translocation protein TolB; Provisional	99.83
PRK04922	433	tolB translocation protein TolB; Provisional	99.82
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.79
PF00326	213	Peptidase_S9: Prolyl oligopeptidase family This fa	99.79
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.71
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.68
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.68
PRK13604	307	luxD acyl transferase; Provisional	99.62
PRK05077	414	frsA fermentation/respiration switch protein; Revi	99.57
TIGR01840	212	esterase_phb esterase, PHB depolymerase family. Th	99.53
TIGR00976	550	/NonD putative hydrolase, CocE/NonD family. This m	99.51
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	99.5
PF05448	320	AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0	99.5
PF02129	272	Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam	99.48
COG3458	321	Acetyl esterase (deacetylase) [Secondary metabolit	99.48
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.45
COG0412	236	Dienelactone hydrolase and related enzymes [Second	99.44
TIGR03101	266	hydr2_PEP hydrolase, ortholog 2, exosortase system	99.43
PF12715	390	Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8	99.43
PLN02298	330	hydrolase, alpha/beta fold family protein	99.42
PF06500	411	DUF1100: Alpha/beta hydrolase of unknown function	99.41
PRK10566	249	esterase; Provisional	99.4
PF10503	220	Esterase_phd: Esterase PHB depolymerase	99.37
COG4946	668	Uncharacterized protein related to the periplasmic	99.35
PLN02442	283	S-formylglutathione hydrolase	99.34
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	99.33
TIGR02821	275	fghA_ester_D S-formylglutathione hydrolase. This m	99.33
PF01738	218	DLH: Dienelactone hydrolase family; InterPro: IPR0	99.32
COG2936	563	Predicted acyl esterases [General function predict	99.3
PRK10162	318	acetyl esterase; Provisional	99.28
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.28
PLN02385	349	hydrolase; alpha/beta fold family protein	99.28
PLN00021	313	chlorophyllase	99.25
COG3509	312	LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda	99.25
PRK10985	324	putative hydrolase; Provisional	99.22
PHA02857	276	monoglyceride lipase; Provisional	99.22
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	99.18
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.17
cd00312	493	Esterase_lipase Esterases and lipases (includes fu	99.17
PRK10749	330	lysophospholipase L2; Provisional	99.16
PLN02652	395	hydrolase; alpha/beta fold family protein	99.16
COG2945	210	Predicted hydrolase of the alpha/beta superfamily	99.15
TIGR03100	274	hydr1_PEP hydrolase, ortholog 1, exosortase system	99.14
COG0657	312	Aes Esterase/lipase [Lipid metabolism]	99.14
PRK05371	767	x-prolyl-dipeptidyl aminopeptidase; Provisional	99.13
COG4099	387	Predicted peptidase [General function prediction o	99.13
KOG1455	313	consensus Lysophospholipase [Lipid transport and m	99.1
COG1647	243	Esterase/lipase [General function prediction only]	99.09
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.09
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.07
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.07
PLN02511	388	hydrolase	99.06
KOG1515	336	consensus Arylacetamide deacetylase [Defense mecha	99.06
COG2267	298	PldB Lysophospholipase [Lipid metabolism]	99.05
COG4946	668	Uncharacterized protein related to the periplasmic	99.04
PF12740	259	Chlorophyllase2: Chlorophyllase enzyme; InterPro:	99.04
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.02
PRK13616	591	lipoprotein LpqB; Provisional	99.02
PF07859	211	Abhydrolase_3: alpha/beta hydrolase fold A web pag	99.02
PF12695	145	Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3	99.0
KOG4391	300	consensus Predicted alpha/beta hydrolase BEM46 [Ge	98.96
PRK11028	330	6-phosphogluconolactonase; Provisional	98.94
PRK00870	302	haloalkane dehalogenase; Provisional	98.93
KOG1552	258	consensus Predicted alpha/beta hydrolase [General	98.93
COG4188	365	Predicted dienelactone hydrolase [General function	98.92
COG2272	491	PnbA Carboxylesterase type B [Lipid metabolism]	98.89
PF12697	228	Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3	98.87
PF03403	379	PAF-AH_p_II: Platelet-activating factor acetylhydr	98.86
PLN02872	395	triacylglycerol lipase	98.85
TIGR03343	282	biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die	98.85
PF00756	251	Esterase: Putative esterase; InterPro: IPR000801 T	98.84
COG0429	345	Predicted hydrolase of the alpha/beta-hydrolase fo	98.83
TIGR01836	350	PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth	98.81
PRK11460	232	putative hydrolase; Provisional	98.8
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.8
TIGR03695	251	menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene	98.79
PF00135	535	COesterase: Carboxylesterase family The prints ent	98.79
PRK11028	330	6-phosphogluconolactonase; Provisional	98.77
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.77
PLN02211	273	methyl indole-3-acetate methyltransferase	98.76
TIGR01250	288	pro_imino_pep_2 proline-specific peptidases, Bacil	98.76
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.76
TIGR02427	251	protocat_pcaD 3-oxoadipate enol-lactonase. Members	98.75
TIGR01607	332	PST-A Plasmodium subtelomeric family (PST-A). Thes	98.73
TIGR03611	257	RutD pyrimidine utilization protein D. This protei	98.72
PLN02965	255	Probable pheophorbidase	98.71
PRK13616	591	lipoprotein LpqB; Provisional	98.71
PRK10673	255	acyl-CoA esterase; Provisional	98.71
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.7
PLN02824	294	hydrolase, alpha/beta fold family protein	98.7
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.69
TIGR03056	278	bchO_mg_che_rel putative magnesium chelatase acces	98.69
PF07224	307	Chlorophyllase: Chlorophyllase; InterPro: IPR01082	98.68
KOG3847	399	consensus Phospholipase A2 (platelet-activating fa	98.67
TIGR01249	306	pro_imino_pep_1 proline iminopeptidase, Neisseria-	98.67
PLN02894	402	hydrolase, alpha/beta fold family protein	98.66
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	98.66
PLN03087	481	BODYGUARD 1 domain containing hydrolase; Provision	98.65
TIGR02240	276	PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer	98.65
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.63
cd00707	275	Pancreat_lipase_like Pancreatic lipase-like enzyme	98.63
KOG3101	283	consensus Esterase D [General function prediction	98.61
PRK03592	295	haloalkane dehalogenase; Provisional	98.6
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.59
TIGR01392	351	homoserO_Ac_trn homoserine O-acetyltransferase. Th	98.58
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	98.55
KOG4178	322	consensus Soluble epoxide hydrolase [Lipid transpo	98.55
PRK03204	286	haloalkane dehalogenase; Provisional	98.54
PRK10349	256	carboxylesterase BioH; Provisional	98.54
KOG1838	409	consensus Alpha/beta hydrolase [General function p	98.53
TIGR01738	245	bioH putative pimeloyl-BioC--CoA transferase BioH.	98.52
PRK11126	242	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl	98.51
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.51
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.49
KOG4627	270	consensus Kynurenine formamidase [Amino acid trans	98.49
PLN02578	354	hydrolase	98.49
PRK06489	360	hypothetical protein; Provisional	98.48
PRK10115	686	protease 2; Provisional	98.47
PRK07581	339	hypothetical protein; Validated	98.45
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.44
PLN02679	360	hydrolase, alpha/beta fold family protein	98.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.41
PRK11071	190	esterase YqiA; Provisional	98.39
KOG4409	365	consensus Predicted hydrolase/acyltransferase (alp	98.38
PLN03084	383	alpha/beta hydrolase fold protein; Provisional	98.37
TIGR03230	442	lipo_lipase lipoprotein lipase. Members of this pr	98.35
PRK08775	343	homoserine O-acetyltransferase; Provisional	98.32
PF02230	216	Abhydrolase_2: Phospholipase/Carboxylesterase; Int	98.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.28
PRK00175	379	metX homoserine O-acetyltransferase; Provisional	98.27
KOG2564	343	consensus Predicted acetyltransferases and hydrola	98.26
PRK05855	582	short chain dehydrogenase; Validated	98.23
KOG4667	269	consensus Predicted esterase [Lipid transport and	98.22
KOG2055	514	consensus WD40 repeat protein [General function pr	98.22
TIGR01838	532	PHA_synth_I poly(R)-hydroxyalkanoic acid synthase,	98.21
PF06342	297	DUF1057: Alpha/beta hydrolase of unknown function	98.19
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.18
PF03583	290	LIP: Secretory lipase ; InterPro: IPR005152 This e	98.17
PF02273	294	Acyl_transf_2: Acyl transferase; InterPro: IPR0031	98.16
COG4757	281	Predicted alpha/beta hydrolase [General function p	98.16
PLN02980	1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	98.15
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.15
COG0400	207	Predicted esterase [General function prediction on	98.14
TIGR03502	792	lipase_Pla1_cef extracellular lipase, Pla-1/cef fa	98.11
KOG0645	312	consensus WD40 repeat protein [General function pr	98.1
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	98.09
KOG1516	545	consensus Carboxylesterase and related proteins [G	98.08
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	98.07
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	98.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.07
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.03
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.02
KOG2055	514	consensus WD40 repeat protein [General function pr	98.02
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.02
KOG1553	517	consensus Predicted alpha/beta hydrolase BAT5 [Gen	98.01
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.98
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.98
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.97
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.97
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.97
COG2819	264	Predicted hydrolase of the alpha/beta superfamily	97.96
PF12146	79	Hydrolase_4: Putative lysophospholipase; InterPro:	97.96
PF08538	303	DUF1749: Protein of unknown function (DUF1749); In	97.95
PTZ00420	568	coronin; Provisional	97.95
PF00561	230	Abhydrolase_1: alpha/beta hydrolase fold A web pag	97.94
KOG0266	456	consensus WD40 repeat-containing protein [General	97.93
PTZ00421	493	coronin; Provisional	97.92
KOG3043	242	consensus Predicted hydrolase related to dienelact	97.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.89
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	97.89
PTZ00421	493	coronin; Provisional	97.89
KOG0266	456	consensus WD40 repeat-containing protein [General	97.88
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.87
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	97.87
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.82
PF08840	213	BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term	97.8
COG1770	682	PtrB Protease II [Amino acid transport and metabol	97.8
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.8
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.79
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.79
PF09752	348	DUF2048: Uncharacterized conserved protein (DUF204	97.79
COG2382	299	Fes Enterochelin esterase and related enzymes [Ino	97.77
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.76
PF10340	374	DUF2424: Protein of unknown function (DUF2424); In	97.75
KOG2624	403	consensus Triglyceride lipase-cholesterol esterase	97.75
PF05677	365	DUF818: Chlamydia CHLPS protein (DUF818); InterPro	97.74
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.73
PF05728	187	UPF0227: Uncharacterised protein family (UPF0227);	97.71
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.7
KOG1454	326	consensus Predicted hydrolase/acyltransferase (alp	97.69
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.69
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.66
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.66
TIGR01839	560	PHA_synth_II poly(R)-hydroxyalkanoic acid synthase	97.65
KOG0645	312	consensus WD40 repeat protein [General function pr	97.64
PRK06765	389	homoserine O-acetyltransferase; Provisional	97.64
KOG0286	343	consensus G-protein beta subunit [General function	97.64
KOG0296	399	consensus Angio-associated migratory cell protein	97.6
PTZ00420	568	coronin; Provisional	97.58
COG0627	316	Predicted esterase [General function prediction on	97.58
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	97.58
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.57
KOG2096	420	consensus WD40 repeat protein [General function pr	97.55
COG3571	213	Predicted hydrolase of the alpha/beta-hydrolase fo	97.52
KOG1274	933	consensus WD40 repeat protein [General function pr	97.52
KOG0286	343	consensus G-protein beta subunit [General function	97.5
PRK07868	994	acyl-CoA synthetase; Validated	97.49
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.47
COG0596	282	MhpC Predicted hydrolases or acyltransferases (alp	97.47
COG2021	368	MET2 Homoserine acetyltransferase [Amino acid tran	97.4
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	97.39
KOG2139	445	consensus WD40 repeat protein [General function pr	97.37
KOG2314	698	consensus Translation initiation factor 3, subunit	97.35
PLN00181	793	protein SPA1-RELATED; Provisional	97.29
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	97.26
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	97.25
KOG2048	691	consensus WD40 repeat protein [General function pr	97.22
PF07819	225	PGAP1: PGAP1-like protein; InterPro: IPR012908 The	97.22
KOG2139	445	consensus WD40 repeat protein [General function pr	97.2
PTZ00472	462	serine carboxypeptidase (CBP1); Provisional	97.2
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.18
PF01674	219	Lipase_2: Lipase (class 2); InterPro: IPR002918 Li	97.14
PF00151	331	Lipase: Lipase; InterPro: IPR013818 Triglyceride l	97.13
COG3391	381	Uncharacterized conserved protein [Function unknow	97.12
PF11144	403	DUF2920: Protein of unknown function (DUF2920); In	97.08
PF10230	266	DUF2305: Uncharacterised conserved protein (DUF230	97.08
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	97.07
KOG2314	698	consensus Translation initiation factor 3, subunit	97.07
PF05577	434	Peptidase_S28: Serine carboxypeptidase S28; InterP	97.07
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	97.04
KOG0288	459	consensus WD40 repeat protein TipD [General functi	97.04
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.04
KOG0973	942	consensus Histone transcription regulator HIRA, WD	96.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	96.91
KOG0289	506	consensus mRNA splicing factor [General function p	96.88
KOG0296	399	consensus Angio-associated migratory cell protein	96.88
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	96.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.86
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	96.83
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.83
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.82
KOG1274	933	consensus WD40 repeat protein [General function pr	96.82
KOG1407	313	consensus WD40 repeat protein [Function unknown]	96.81
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	96.8
PLN00181	793	protein SPA1-RELATED; Provisional	96.79
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.78
PLN02733	440	phosphatidylcholine-sterol O-acyltransferase	96.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	96.74
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	96.74
KOG4389	601	consensus Acetylcholinesterase/Butyrylcholinestera	96.7
KOG0973	942	consensus Histone transcription regulator HIRA, WD	96.7
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.69
KOG2382	315	consensus Predicted alpha/beta hydrolase [General	96.65
KOG4840	299	consensus Predicted hydrolases or acyltransferases	96.64
COG3391	381	Uncharacterized conserved protein [Function unknow	96.59
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.52
KOG1273	405	consensus WD40 repeat protein [General function pr	96.48
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.47
KOG1539	910	consensus WD repeat protein [General function pred	96.42
KOG0639	705	consensus Transducin-like enhancer of split protei	96.38
COG4947	227	Uncharacterized protein conserved in bacteria [Fun	96.36
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.35
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.34
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.34
PF00450	415	Peptidase_S10: Serine carboxypeptidase; InterPro:	96.32
KOG1273	405	consensus WD40 repeat protein [General function pr	96.3
PF00975	229	Thioesterase: Thioesterase domain; InterPro: IPR00	96.3
KOG3967	297	consensus Uncharacterized conserved protein [Funct	96.29
KOG0303	472	consensus Actin-binding protein Coronin, contains	96.28
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	96.16
KOG0284	464	consensus Polyadenylation factor I complex, subuni	96.16
PF06821	171	Ser_hydrolase: Serine hydrolase; InterPro: IPR0106	96.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.14
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	96.13
PF05990	233	DUF900: Alpha/beta hydrolase of unknown function (	96.12
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.09
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.08
PF06028	255	DUF915: Alpha/beta hydrolase of unknown function (	96.03
PRK13614	573	lipoprotein LpqB; Provisional	96.02
KOG0643	327	consensus Translation initiation factor 3, subunit	96.02
KOG2315	566	consensus Predicted translation initiation factor	95.97
KOG2096	420	consensus WD40 repeat protein [General function pr	95.96
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.95
PF06057	192	VirJ: Bacterial virulence protein (VirJ); InterPro	95.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	95.93
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.85
KOG0284	464	consensus Polyadenylation factor I complex, subuni	95.84
PF11187	224	DUF2974: Protein of unknown function (DUF2974); In	95.83
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	95.8
KOG0295	406	consensus WD40 repeat-containing protein [Function	95.76
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	95.7
KOG2106	626	consensus Uncharacterized conserved protein, conta	95.7
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	95.62
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	95.61
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	95.6
PRK04940	180	hypothetical protein; Provisional	95.56
PF07082	250	DUF1350: Protein of unknown function (DUF1350); In	95.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	95.45
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.44
KOG0303	472	consensus Actin-binding protein Coronin, contains	95.38
PRK13614	573	lipoprotein LpqB; Provisional	95.36
KOG1539	910	consensus WD repeat protein [General function pred	95.33
PRK13613	599	lipoprotein LpqB; Provisional	95.31
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	95.3
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	95.26
KOG2048	691	consensus WD40 repeat protein [General function pr	95.25
KOG2315	566	consensus Predicted translation initiation factor	95.24
KOG2281	867	consensus Dipeptidyl aminopeptidases/acylaminoacyl	95.18
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.16
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	95.13
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.05
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	95.02
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	94.99
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	94.95
PRK13613	599	lipoprotein LpqB; Provisional	94.94
COG3208	244	GrsT Predicted thioesterase involved in non-riboso	94.86
KOG0282	503	consensus mRNA splicing factor [Function unknown]	94.85
KOG0643	327	consensus Translation initiation factor 3, subunit	94.84
KOG0771	398	consensus Prolactin regulatory element-binding pro	94.77
KOG1214	1289	consensus Nidogen and related basement membrane pr	94.76
KOG2111	346	consensus Uncharacterized conserved protein, conta	94.71
PF12048	310	DUF3530: Protein of unknown function (DUF3530); In	94.7
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	94.69
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	94.63
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.63
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.61
KOG2106	626	consensus Uncharacterized conserved protein, conta	94.58
KOG0289	506	consensus mRNA splicing factor [General function p	94.57
KOG3724	973	consensus Negative regulator of COPII vesicle form	94.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.53
PLN03016	433	sinapoylglucose-malate O-sinapoyltransferase	94.5
KOG2182	514	consensus Hydrolytic enzymes of the alpha/beta hyd	94.5
PF07519	474	Tannase: Tannase and feruloyl esterase; InterPro:	94.48
KOG2112	206	consensus Lysophospholipase [Lipid transport and m	94.48
KOG1063	764	consensus RNA polymerase II elongator complex, sub	94.39
KOG0639	705	consensus Transducin-like enhancer of split protei	94.37
PRK02888	635	nitrous-oxide reductase; Validated	94.35
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	94.32
PLN02209	437	serine carboxypeptidase	94.3
PF03959	212	FSH1: Serine hydrolase (FSH1); InterPro: IPR005645	94.29
COG3319	257	Thioesterase domains of type I polyketide synthase	94.25
KOG0283	712	consensus WD40 repeat-containing protein [Function	94.22
KOG0640	430	consensus mRNA cleavage stimulating factor complex	94.16
COG4782	377	Uncharacterized protein conserved in bacteria [Fun	94.12
KOG0283	712	consensus WD40 repeat-containing protein [Function	93.81
PF11339	581	DUF3141: Protein of unknown function (DUF3141); In	93.77
COG1075	336	LipA Predicted acetyltransferases and hydrolases w	93.76
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.72
KOG2984	277	consensus Predicted hydrolase [General function pr	93.61
KOG4532	344	consensus WD40-like repeat containing protein [Gen	93.6
KOG2931	326	consensus Differentiation-related gene 1 protein (	93.58
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	93.49
KOG4388	880	consensus Hormone-sensitive lipase HSL [Lipid tran	93.48
PRK02888	635	nitrous-oxide reductase; Validated	93.45
KOG2100	755	consensus Dipeptidyl aminopeptidase [Posttranslati	93.44
COG3243	445	PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me	93.36
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	93.22
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.18
KOG2110	391	consensus Uncharacterized conserved protein, conta	93.17
KOG0641	350	consensus WD40 repeat protein [General function pr	93.15
KOG0647	347	consensus mRNA export protein (contains WD40 repea	93.14
COG3150	191	Predicted esterase [General function prediction on	93.08
KOG0278	334	consensus Serine/threonine kinase receptor-associa	93.07
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	92.92
TIGR01849	406	PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase,	92.89
PRK13615	557	lipoprotein LpqB; Provisional	92.75
KOG0294	362	consensus WD40 repeat-containing protein [Function	92.58
COG4814	288	Uncharacterized protein with an alpha/beta hydrola	92.49
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.28
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	92.1
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	92.07
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.02
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	91.99
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.89
KOG1214	1289	consensus Nidogen and related basement membrane pr	91.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	91.87
KOG2183	492	consensus Prolylcarboxypeptidase (angiotensinase C	91.8
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.63
PF05057	217	DUF676: Putative serine esterase (DUF676); InterPr	91.63
KOG0269	839	consensus WD40 repeat-containing protein [Function	91.62
KOG0771	398	consensus Prolactin regulatory element-binding pro	91.52
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	91.38
KOG2551	230	consensus Phospholipase/carboxyhydrolase [Amino ac	91.34
PLN02193	470	nitrile-specifier protein	91.21
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	91.18
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.77
KOG0310	487	consensus Conserved WD40 repeat-containing protein	90.75
PHA02713	557	hypothetical protein; Provisional	90.69
PF02450	389	LCAT: Lecithin:cholesterol acyltransferase; InterP	90.6
PF11288	207	DUF3089: Protein of unknown function (DUF3089); In	90.32
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	90.27
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	90.25
PF01764	140	Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr	90.25
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	90.22
PRK13615	557	lipoprotein LpqB; Provisional	89.96
TIGR03712	511	acc_sec_asp2 accessory Sec system protein Asp2. Th	89.95
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	89.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	89.68
PF03283	361	PAE: Pectinacetylesterase	89.65
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	89.59
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	89.5
KOG4283	397	consensus Transcription-coupled repair protein CSA	89.46
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	89.38
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	89.31
PHA03098	534	kelch-like protein; Provisional	89.26
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	89.24
KOG0647	347	consensus mRNA export protein (contains WD40 repea	89.13
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.09
PHA03098	534	kelch-like protein; Provisional	89.06
PHA02713	557	hypothetical protein; Provisional	89.01
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	89.01
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	88.94
cd00741	153	Lipase Lipase. Lipases are esterases that can hydr	88.81
KOG2111	346	consensus Uncharacterized conserved protein, conta	88.71
PF03096	283	Ndr: Ndr family; InterPro: IPR004142 This family c	88.55
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	88.44
KOG1282	454	consensus Serine carboxypeptidases (lysosomal cath	88.36
COG3545	181	Predicted esterase of the alpha/beta hydrolase fol	88.3
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	87.99
KOG0310	487	consensus Conserved WD40 repeat-containing protein	87.78
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	87.21
KOG0316	307	consensus Conserved WD40 repeat-containing protein	87.11
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	87.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	86.84
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	86.75
KOG1063	764	consensus RNA polymerase II elongator complex, sub	86.71
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	86.44
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	86.44
PLN02606	306	palmitoyl-protein thioesterase	86.04
KOG3975	301	consensus Uncharacterized conserved protein [Funct	86.03
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	85.84
KOG0294	362	consensus WD40 repeat-containing protein [Function	85.82
PF13449	326	Phytase-like: Esterase-like activity of phytase	85.76
PF12566	122	DUF3748: Protein of unknown function (DUF3748); In	85.4
KOG0316	307	consensus Conserved WD40 repeat-containing protein	85.04
KOG2565	469	consensus Predicted hydrolases or acyltransferases	84.98
KOG0302	440	consensus Ribosome Assembly protein [General funct	84.92
PLN02454	414	triacylglycerol lipase	84.89
KOG1963	792	consensus WD40 repeat protein [General function pr	84.13
KOG4328	498	consensus WD40 protein [Function unknown]	84.11
PLN02633	314	palmitoyl protein thioesterase family protein	84.03
KOG2041	1189	consensus WD40 repeat protein [General function pr	83.86
KOG2541	296	consensus Palmitoyl protein thioesterase [Lipid tr	83.84
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.51
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	83.48
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	83.22
KOG0295	406	consensus WD40 repeat-containing protein [Function	82.95
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	82.26
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	82.14
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	81.6
PF15525	200	DUF4652: Domain of unknown function (DUF4652)	81.56
KOG2321	703	consensus WD40 repeat protein [General function pr	81.54
PLN02408	365	phospholipase A1	81.23
cd00519	229	Lipase_3 Lipase (class 3). Lipases are esterases t	80.95
COG2939	498	Carboxypeptidase C (cathepsin A) [Amino acid trans	80.71
KOG4283	397	consensus Transcription-coupled repair protein CSA	80.65
PLN02571	413	triacylglycerol lipase	80.2
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	80.16
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	80.09

>PRK10115 protease 2; Provisional

Probab=100.00  E-value=5.6e-39  Score=357.71  Aligned_cols=464  Identities=12%  Similarity=0.070  Sum_probs=319.3

Q ss_pred             CCcEEEEeecCCCCCceEEEEcCCCCC---CCCcccCC-CCCccceeeeecCCceEEEeCC--EEEEEeCCCC----cEE
Q 006979           99 HGRLIWLESRPTEAGRGVLVKEPAKAG---DEPSDITP-KEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ----RLY  168 (623)
Q Consensus        99 ~~~~~~l~~~~~e~g~~~l~~~~~~~g---g~~~~l~p-~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~----~l~  168 (623)
                      |+..||....+.  .+..||+.....+   +..+.+++ .........  +..+.+.+++|  .|+|....+|    +|+
T Consensus        81 g~~~y~~~~~~g--~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~--~~l~~~~~Spdg~~la~~~d~~G~E~~~l~  156 (686)
T PRK10115         81 NGYRYRHIYEPG--CEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEF--YTLGGMAITPDNTIMALAEDFLSRRQYGIR  156 (686)
T ss_pred             CCEEEEEEEcCC--CccEEEEEecCCCCCCCCCEEEEcchhhccCCCc--EEEeEEEECCCCCEEEEEecCCCcEEEEEE
Confidence            788788775543  3566775543211   12344553 221111111  22345556655  7888765554    499


Q ss_pred             EEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC--cc
Q 006979          169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD--FY  246 (623)
Q Consensus       169 ~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~--~~  246 (623)
                      ++|+.+|...+..+...      . ..+.|++||+.++|++.+...   ....++|++++.++..+ .+.|..+.+  +.
T Consensus       157 v~d~~tg~~l~~~i~~~------~-~~~~w~~D~~~~~y~~~~~~~---~~~~~v~~h~lgt~~~~-d~lv~~e~~~~~~  225 (686)
T PRK10115        157 FRNLETGNWYPELLDNV------E-PSFVWANDSWTFYYVRKHPVT---LLPYQVWRHTIGTPASQ-DELVYEEKDDTFY  225 (686)
T ss_pred             EEECCCCCCCCccccCc------c-eEEEEeeCCCEEEEEEecCCC---CCCCEEEEEECCCChhH-CeEEEeeCCCCEE
Confidence            99998771113444432      2 237899999999998774311   12378999999988321 344544322  22


Q ss_pred             cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeee
Q 006979          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN  326 (623)
Q Consensus       247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~  326 (623)
                      ....-+.||+++.......     ..+++++++.+.... ..+.++.... +  ....-..|  ++.+|+.++.+....+
T Consensus       226 ~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~-~~~~~~~~~~-~--~~~~~~~~--~~~ly~~tn~~~~~~~  294 (686)
T PRK10115        226 VSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADA-EPFVFLPRRK-D--HEYSLDHY--QHRFYLRSNRHGKNFG  294 (686)
T ss_pred             EEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCC-CceEEEECCC-C--CEEEEEeC--CCEEEEEEcCCCCCce
Confidence            2223345999987444332     245677777432211 1222332222 1  11111122  2347877876556778


Q ss_pred             EEEEecC-CCeEEEEeeccc--ccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCc-c
Q 006979          327 LHKWIES-NNEVLAIYSLDA--EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT-D  402 (623)
Q Consensus       327 L~~~d~~-~~~~~~l~~~~~--~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~-~  402 (623)
                      |+++++. .++.+.|.++..  .+.         .+.+     .++.|++...++|..+|+.++..++.++.|+.+.. .
T Consensus       295 l~~~~~~~~~~~~~l~~~~~~~~i~---------~~~~-----~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~  360 (686)
T PRK10115        295 LYRTRVRDEQQWEELIPPRENIMLE---------GFTL-----FTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAY  360 (686)
T ss_pred             EEEecCCCcccCeEEECCCCCCEEE---------EEEE-----ECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCce
Confidence            9988876 455666765521  222         2233     35689999999999999999988777777763221 1


Q ss_pred             eEe--e--eecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCCCccCCCCCCCcEEEEeecCCCCeEEEEE
Q 006979          403 IDN--I--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAY  478 (623)
Q Consensus       403 v~~--~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~dg~~i~~~  478 (623)
                      +..  .  +.+++.+++..++...|+.+|.+++++++.+.|+      ......+++..+ .++.+++++. ||.+|+++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~------~~~~~~~~~~~~-~~e~v~~~s~-DG~~Ip~~  432 (686)
T PRK10115        361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK------QTEVPGFDAANY-RSEHLWITAR-DGVEVPVS  432 (686)
T ss_pred             EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE------ecCCCCcCcccc-EEEEEEEECC-CCCEEEEE
Confidence            221  2  3556789999999999999999999988755544      222223555555 8999999998 99999996


Q ss_pred             EEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHH
Q 006979          479 YYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC  558 (623)
Q Consensus       479 l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~  558 (623)
                      +..+++. +   .+++.|+||++||||+....+.|+...+.|+++||+|+.+|+|||+|||++|.++....++..+++|+
T Consensus       433 l~~~~~~-~---~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~  508 (686)
T PRK10115        433 LVYHRKH-F---RKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDY  508 (686)
T ss_pred             EEEECCC-C---CCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHH
Confidence            5554431 1   14567999999999999999999999999999999999999999999999999988888899999999


Q ss_pred             HHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979          559 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       559 ~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~  614 (623)
                      ++|++||+++|++|++||+|+|+|+||+++++++ .+|++|+|+|+.+|++||..++
T Consensus       509 ~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~  565 (686)
T PRK10115        509 LDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTM  565 (686)
T ss_pred             HHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhc
Confidence            9999999999999999999999999999999999 6799999999999999999764

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-35  Score=325.87  Aligned_cols=479  Identities=23%  Similarity=0.282  Sum_probs=317.6

Q ss_pred             CHHHHhccCCccCceEEcC-CCcEEEEeecC---CCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC
Q 006979           80 TADVVSGASKRLGGTAVDG-HGRLIWLESRP---TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD  155 (623)
Q Consensus        80 t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~---~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d  155 (623)
                      +++.+.. -..+.++.++| ++.++++...-   ....+..+|..+..   ..+.++..          .+.....++++
T Consensus         5 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~----------~~~~~~~~spd   70 (620)
T COG1506           5 DAEDLLA-LARVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGK---TVRLLTFG----------GGVSELRWSPD   70 (620)
T ss_pred             CHHHHHh-hhcccCcccCCCCceeEEeeccccccccccccceEEEecc---cccccccC----------CcccccccCCC
Confidence            3444443 24567888888 88888887541   12233445543211   11112221          11222233333


Q ss_pred             --EEEEEeCC---CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccC----CC-----------
Q 006979          156 --TVIFSNYK---DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR----QD-----------  215 (623)
Q Consensus       156 --~l~f~~~~---~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~----~~-----------  215 (623)
                        .++|....   ..++|+++.+ +     .++..    .....+..|+|+|+.+++......    ..           
T Consensus        71 g~~~~~~~~~~~~~~~l~l~~~~-g-----~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (620)
T COG1506          71 GSVLAFVSTDGGRVAQLYLVDVG-G-----LITKT----AFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVW  140 (620)
T ss_pred             CCEEEEEeccCCCcceEEEEecC-C-----ceeee----ecccccceeCCCCCeEEEEecccccccCCceeeeeccccee
Confidence              56666522   2358888765 2     11111    223456789999999988322110    00           


Q ss_pred             --CC-CceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE
Q 006979          216 --AL-NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV  292 (623)
Q Consensus       216 --~~-~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~  292 (623)
                        .. .....+|++|..+ .   ...+..+.......+|.+|++.++.+......-||.. ..++.....+    ....+
T Consensus       141 ~~~~g~~~~~l~~~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~  211 (620)
T COG1506         141 FDGRGGERSDLYVVDIES-K---LIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVT-NLYVLIEGNG----ELESL  211 (620)
T ss_pred             ecCCCCcccceEEEccCc-c---cccccCCCCceeeeeeCCCCceeEEeeeccccCCceE-eeEEEecCCC----ceEEE
Confidence              01 1356788888765 3   3444444444555778888888887775553234432 2233322222    33344


Q ss_pred             cCCCCCccccCcCceeCCCCc-EEEEEeCCC-Ce---eeEEEEecCCCeEEEEe-ecccccccccccccCcceeEEeecC
Q 006979          293 AGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-GF---WNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHG  366 (623)
Q Consensus       293 ~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~-g~---~~L~~~d~~~~~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~s~  366 (623)
                      ....    ..+..+.|.+||+ +++...... +.   ..++.++...++..... ..+ . ....|...   .. .    
T Consensus       212 ~~~~----~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~~~~~---~~-~----  277 (620)
T COG1506         212 TPGE----GSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGD-D-TRGAWAVE---GG-L----  277 (620)
T ss_pred             cCCC----ceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCC-c-ccCcHHhc---cc-c----
Confidence            4443    4677899999999 777766522 21   23445542333333211 111 0 01111110   01 2    


Q ss_pred             CCCEEEEEEEE-CCeEEEEEEeCCCCceeecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEe
Q 006979          367 EKNLIACSYRQ-NGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVW  445 (623)
Q Consensus       367 ~~~~l~~~~~~-~g~~~L~~~d~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~  445 (623)
                      ++..+++...+ .|...++..+..++....+..+...+..++.+++.+++..+++..|+++|+++.  ++..+++     
T Consensus       278 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~-----  350 (620)
T COG1506         278 DGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLT-----  350 (620)
T ss_pred             CCCcEEEEEecCCCceEEEEEeccCCceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEe-----
Confidence            56667766665 777888888766666666666656677777799999999999999999999987  3333322     


Q ss_pred             ccCCCCccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCce
Q 006979          446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW  525 (623)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~  525 (623)
                      ..+ ...+....+.+|+.+++++. ||.+|++|++.|.+  +++  .+++|+||++||||.+.....+....|.|+++||
T Consensus       351 ~~~-~~~~~~~~~~~~e~~~~~~~-dG~~i~~~l~~P~~--~~~--~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~  424 (620)
T COG1506         351 SSN-NSGLKKVKLAEPEPVTYKSN-DGETIHGWLYKPPG--FDP--RKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGY  424 (620)
T ss_pred             ecc-cccccccccCCceEEEEEcC-CCCEEEEEEecCCC--CCC--CCCCCEEEEeCCCCccccccccchhhHHHhcCCe
Confidence            222 23455577889999999998 99999999999988  444  6679999999999998888889999999999999


Q ss_pred             EEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecc
Q 006979          526 AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY  605 (623)
Q Consensus       526 ~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~  605 (623)
                      +|+.+|||||+|||++|.+...++||..+.+|+++++++|.+++.+|++||+|+|+||||||+++++++.+.|+|+|+.+
T Consensus       425 ~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~f~a~~~~~  504 (620)
T COG1506         425 AVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAVA  504 (620)
T ss_pred             EEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCchhheEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999997766999999999


Q ss_pred             cCCCHHHh-hhhcc
Q 006979          606 GVSIPVII-SEELW  618 (623)
Q Consensus       606 g~~d~~~~-~~~~~  618 (623)
                      |++|+..+ ...+.
T Consensus       505 ~~~~~~~~~~~~~~  518 (620)
T COG1506         505 GGVDWLLYFGESTE  518 (620)
T ss_pred             Ccchhhhhccccch
Confidence            98777654 33344

>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-33  Score=284.12  Aligned_cols=451  Identities=18%  Similarity=0.222  Sum_probs=299.5

Q ss_pred             ceeeeecCCceEEEeCC--EEEEEeCCCCcEEEEeCCCCCC--CceecCCC--CCCCCeeecceeeCCC-CCEEEEEEec
Q 006979          139 RTTAQEYGGGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDS--SPLPITPD--YGEPLVSYADGIFDPR-FNRYVTVRED  211 (623)
Q Consensus       139 r~~~~~~g~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~--~~~~Lt~~--~~~~~~~~~d~~~sPd-G~~l~~v~~~  211 (623)
                      |.|....|+.+|.+...  ..+|....  .||-.. ++|+.  ...++++.  ...+..--.||+.+|. +.+|+|++. 
T Consensus       145 RkR~~~~GItsYe~hk~sg~~lF~~~s--~l~~c~-d~g~~~~t~~p~~p~~v~t~~t~~~~dP~lcP~~~~fia~i~~-  220 (867)
T KOG2281|consen  145 RKRLGVTGITSYEIHKGSGKFLFQANS--GLYHCS-DGGPQGFTVSPLTPLPVKTSPTSTRMDPKLCPADPDFIAYIKV-  220 (867)
T ss_pred             HhhhceeeeeeEEEEcCCccEEEEecC--Cccccc-cCCCcccccCCCCCccccCCCCCCccCcccCCCCccceeeeeh-
Confidence            55555678888888644  56776542  255332 12210  12222222  0112223357888875 899999876 


Q ss_pred             cCCCCCCceeEEEEEEcCCCCcccceecccC----------------C--------CcccceeeCCCC----CEEEEEEe
Q 006979          212 RRQDALNSTTEIVAIALNGQNIQEPKVLVSG----------------S--------DFYAFPRMDPRG----ERMAWIEW  263 (623)
Q Consensus       212 ~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~----------------~--------~~~~~p~wSPDG----~~la~~~~  263 (623)
                               ..||+.++.++.   .++|+..                +        +-+.+--|||-.    .+|+|...
T Consensus       221 ---------~dl~V~n~~~~~---ekrlt~~h~g~sn~~dd~~saGVasyv~QEEfdR~~GyWW~p~s~~~~~rIlYeeV  288 (867)
T KOG2281|consen  221 ---------CDLWVLNILTGE---EKRLTYIHNGSSNSKDDAISAGVASYVVQEEFDRFEGYWWSPPSGLKILRILYEEV  288 (867)
T ss_pred             ---------hhhhhhhhhhch---hhceeeeeccccccccchhhcCcchHHHHHHHHhhcceeecCCCCCceEEEEeeec
Confidence                     568888887776   4444321                0        113345599633    56777776


Q ss_pred             cCCCC-------------------------CCCceEEEEEEecCC--Cc---eeeeEEEcCCC--CCccccCcCceeCCC
Q 006979          264 HHPNM-------------------------PWDKAELWVGYISEN--GD---VYKRVCVAGFD--PTIVESPTEPKWSSK  311 (623)
Q Consensus       264 ~~~~~-------------------------p~~~~~L~v~d~~~~--~~---~~~~~~~~~~~--~~~~~~~~~~~ws~D  311 (623)
                      |++.+                         ++....|-++.+..+  +.   +..+.++-...  -.|++++.++.|.||
T Consensus       289 desev~V~h~~s~~~~~~~~d~~rYPrtGt~Nak~~Lkmv~~~~~~~gk~~~v~~kdlv~~~~~~f~~~EYI~Ragwtpd  368 (867)
T KOG2281|consen  289 DESEVEVIHVPSPVLGDRRVDSYRYPRTGTKNAKSTLKMVEFENDAEGKIYDVPLKDLVQPFHCLFEDVEYIARAGWTPD  368 (867)
T ss_pred             ChhheEEEeccCcccCCCccccccCCcCCCCCceeeEEEEEEeeccccceeccchhhcccccccccccceeeeeccccCC
Confidence            66521                         234455555554432  11   11111111111  134578899999999


Q ss_pred             CcEEEE--EeCCCCeeeEEEEecCCCeE---------------------EEEeecccccccccccccCcceeEEeecC--
Q 006979          312 GELFFV--TDRKNGFWNLHKWIESNNEV---------------------LAIYSLDAEFSRPLWVFGINSYEIIQSHG--  366 (623)
Q Consensus       312 G~l~~~--~~~~~g~~~L~~~d~~~~~~---------------------~~l~~~~~~~~~~~w~~~~~~~~~l~~s~--  366 (623)
                      |+.+|+  -++++-+-+|..++++....                     ..+..+    ....|..-.+-+.+++.++  
T Consensus       369 gkyvwvq~LdR~Q~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~viyee----~sd~winiHd~f~~~~~~~~e  444 (867)
T KOG2281|consen  369 GKYVWVQVLDRSQQRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVIYEE----PSDGWINIHDIFHPLPQSTHE  444 (867)
T ss_pred             CcEEEEEEecCCcceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceEEec----CCCceEEhhhcccccccCCcc
Confidence            994433  35534455666776644321                     112222    2335766666666665443  


Q ss_pred             CCCEEEEEEEECCeEEEEEEeCCC----------------------CceeecccCCcceE---ee--eecCCEEEEEEe-
Q 006979          367 EKNLIACSYRQNGRSYLGILDDFG----------------------HSLSLLDIPFTDID---NI--TLGNDCLFVEGA-  418 (623)
Q Consensus       367 ~~~~l~~~~~~~g~~~L~~~d~~~----------------------~~~~~lt~~~~~v~---~~--~~~~~~~~~~~~-  418 (623)
                      +.-.++|++++.+..|||++....                      ++...|+.++|.|.   ++  +...+.+||++. 
T Consensus       445 ~~~~fi~asE~~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSgeweVl~r~Gi~VdE~~~LVYf~gt~  524 (867)
T KOG2281|consen  445 ASYPFIWASEETGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGEWEVLARHGIWVDEVRKLVYFVGTK  524 (867)
T ss_pred             ceeeEEEecccccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccceeehhhcCeeecccceEEEEEccC
Confidence            223588999999999999985332                      22335666666542   22  566778888886 


Q ss_pred             cCCCCCeEEEEEcC-CCcceeeeeEE---------------------------EeccC--C-C---------------Cc
Q 006979          419 SGVEPSSVAKVTLD-DHKLKAVDFKV---------------------------VWSSS--P-D---------------TL  452 (623)
Q Consensus       419 s~~~~~~ly~~~l~-~~~~~~lt~~~---------------------------~~~~~--~-~---------------~~  452 (623)
                      +...+.+||++.+. .|+..+||..-                           .+...  + .               ..
T Consensus       525 d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~  604 (867)
T KOG2281|consen  525 DTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGA  604 (867)
T ss_pred             CCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcC
Confidence            66677899999998 68888877610                           00000  0 0               00


Q ss_pred             cCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCC----HHhHHHHcCceEE
Q 006979          453 KYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILN----LSIQYWTSRGWAF  527 (623)
Q Consensus       453 ~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~----~~~~~~a~~G~~v  527 (623)
                      ..+-++..|+-+.|.++ .|..+++.+|+|.+  +++  ++++|+++++||||..+..+ .|.    ....+|+++||+|
T Consensus       605 ~~~Pdy~p~eif~fqs~-tg~~lYgmiyKPhn--~~p--gkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~V  679 (867)
T KOG2281|consen  605 PPPPDYVPPEIFSFQSK-TGLTLYGMIYKPHN--FQP--GKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVV  679 (867)
T ss_pred             CCCCccCChhheeeecC-CCcEEEEEEEcccc--CCC--CCCCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEE
Confidence            11122334566788887 89999999999998  665  89999999999999877643 332    4678899999999


Q ss_pred             EEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC-CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecc
Q 006979          528 VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLY  605 (623)
Q Consensus       528 ~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~  605 (623)
                      +.+|.|||--.|..|...+..++|..+++|.+.++++|+++ |++|.+||+|.|||||||++++++ ++|++|+++|+.+
T Consensus       680 v~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGa  759 (867)
T KOG2281|consen  680 VFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGA  759 (867)
T ss_pred             EEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccC
Confidence            99999999999999999999999999999999999999998 489999999999999999999999 8999999999999


Q ss_pred             cCCCHHHhh
Q 006979          606 GVSIPVIIS  614 (623)
Q Consensus       606 g~~d~~~~~  614 (623)
                      |++||..|.
T Consensus       760 pVT~W~~YD  768 (867)
T KOG2281|consen  760 PVTDWRLYD  768 (867)
T ss_pred             cceeeeeec
Confidence            999997663

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-29  Score=258.99  Aligned_cols=455  Identities=13%  Similarity=0.099  Sum_probs=320.1

Q ss_pred             ecCCCCCceEEEEcCCCCCCC-CcccCCCCCccceeeee-cCCceEEEeCC--EEEEEeCCCC----cEEEEeCCCCCCC
Q 006979          107 SRPTEAGRGVLVKEPAKAGDE-PSDITPKEYAVRTTAQE-YGGGAFRIFGD--TVIFSNYKDQ----RLYKHSIDSKDSS  178 (623)
Q Consensus       107 ~~~~e~g~~~l~~~~~~~gg~-~~~l~p~~~~~r~~~~~-~g~~~~~~s~d--~l~f~~~~~~----~l~~~d~~~g~~~  178 (623)
                      .+-.++..+.++...+..|+. .+.|++.  +.+..-++ |..+.+.+++|  .++++.+..|    .|.+.|+.+|...
T Consensus        91 ~r~~~g~~y~~~~R~~~~g~~~eevlLD~--n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~  168 (682)
T COG1770          91 SRTEEGKEYPIYCRQPDEGGEGEEVLLDV--NKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEEL  168 (682)
T ss_pred             EEecCCCcceeEEeccCCCCCceeEeecc--hhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEeccccccc
Confidence            334446777776664443434 4444442  22222223 23456666666  5666644433    2667788776222


Q ss_pred             ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc--CCCcccceeeCCCCC
Q 006979          179 PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGE  256 (623)
Q Consensus       179 ~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~--~~~~~~~p~wSPDG~  256 (623)
                      +..++.       -...+.|.+|++.++|++.+....|    ..||+..+.+...+ -+.+.+  +..|.....=|-+.+
T Consensus       169 ~d~i~~-------~~~~~~Wa~d~~~lfYt~~d~~~rp----~kv~~h~~gt~~~~-d~lvyeE~d~~f~~~v~~s~s~~  236 (682)
T COG1770         169 PDEITN-------TSGSFAWAADGKTLFYTRLDENHRP----DKVWRHRLGTPGSS-DELVYEEKDDRFFLSVGRSRSEA  236 (682)
T ss_pred             chhhcc-------cccceEEecCCCeEEEEEEcCCCCc----ceEEEEecCCCCCc-ceEEEEcCCCcEEEEeeeccCCc
Confidence            223332       2456889999999999988754332    78999888772111 344543  345666666788888


Q ss_pred             EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC--CCc-EEEEEeCCCC-eeeEEEEec
Q 006979          257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGE-LFFVTDRKNG-FWNLHKWIE  332 (623)
Q Consensus       257 ~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~--DG~-l~~~~~~~~g-~~~L~~~d~  332 (623)
                      +|+....++     ..+++++++.+..+. ..+.+.+... +       .....  -|. +|+.++. .| .+.|++...
T Consensus       237 yi~i~~~~~-----~tsE~~ll~a~~p~~-~p~vv~pr~~-g-------~eY~~eh~~d~f~i~sN~-~gknf~l~~ap~  301 (682)
T COG1770         237 YIVISLGSH-----ITSEVRLLDADDPEA-EPKVVLPREN-G-------VEYSVEHGGDRFYILSNA-DGKNFKLVRAPV  301 (682)
T ss_pred             eEEEEcCCC-----cceeEEEEecCCCCC-ceEEEEEcCC-C-------cEEeeeecCcEEEEEecC-CCcceEEEEccC
Confidence            887655344     478999999887643 1233333222 1       12221  245 6666776 45 677876544


Q ss_pred             --CCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceE-ee---
Q 006979          333 --SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID-NI---  406 (623)
Q Consensus       333 --~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~-~~---  406 (623)
                        ....++.+.+......-       .++..     -.++|++..++.|..+|++.+..+++...|..+..... .+   
T Consensus       302 ~~~~~~w~~~I~h~~~~~l-------~~~~~-----f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~  369 (682)
T COG1770         302 SADKSNWRELIPHREDVRL-------EGVDL-----FADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGN  369 (682)
T ss_pred             CCChhcCeeeeccCCCcee-------eeeee-----eccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCC
Confidence              22345666654333221       12223     35788888889999999999998888887776543321 11   


Q ss_pred             -eecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCCCccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCC
Q 006979          407 -TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNP  485 (623)
Q Consensus       407 -~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~  485 (623)
                       ..+..++.+..++.++|.++|-+|+.+++.+.|.+..+..     .++++.. ..+.+..+.. ||..|+..+..-++ 
T Consensus       370 ~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~-----g~dp~~Y-~s~riwa~a~-dgv~VPVSLvyrkd-  441 (682)
T COG1770         370 PEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPG-----GFDPEDY-VSRRIWATAD-DGVQVPVSLVYRKD-  441 (682)
T ss_pred             CCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCC-----CCChhHe-EEEEEEEEcC-CCcEeeEEEEEecc-
Confidence             5578889999999999999999999999977766444322     2455443 5577877776 99999998777765 


Q ss_pred             CCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHH
Q 006979          486 IYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFL  565 (623)
Q Consensus       486 ~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l  565 (623)
                       ++.  .++.|++|+.||..+....+.|+...--|.+|||+....+.||++.-|+.|.+.....-....+.|+++|+++|
T Consensus       442 -~~~--~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~L  518 (682)
T COG1770         442 -TKL--DGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHL  518 (682)
T ss_pred             -cCC--CCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHH
Confidence             222  67789999999998888889999888889999999999999999999999999888777788899999999999


Q ss_pred             HhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHh
Q 006979          566 VGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVII  613 (623)
Q Consensus       566 ~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~  613 (623)
                      +++++.++++|+++|+|+||.++.+++ ..|++|+++|+..|++|...-
T Consensus       519 v~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltT  567 (682)
T COG1770         519 VKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTT  567 (682)
T ss_pred             HHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhh
Confidence            999999999999999999999999999 889999999999999998753

>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-25  Score=251.42  Aligned_cols=406  Identities=19%  Similarity=0.250  Sum_probs=249.2

Q ss_pred             ecceeeCCCCCEEEEEEeccCC-CCCCceeEEEEEEcCCCCcccceecccCCCc---------ccceeeCCCCCEEEEEE
Q 006979          193 YADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQEPKVLVSGSDF---------YAFPRMDPRGERMAWIE  262 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~-~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~---------~~~p~wSPDG~~la~~~  262 (623)
                      ..-..|||.|+.++|+.+++-. ..........+++ +++.   -.......|.         ...-.|||||.+++|..
T Consensus       150 ~~~~~wsp~~~~l~yv~~~niy~~~~~~~~~~~~~~-~~~~---~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~  225 (755)
T KOG2100|consen  150 IQYASWSPLGNDLAYVLHNNIYYQSSEEDEDVRIVS-NGGE---DVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYAS  225 (755)
T ss_pred             eEEEEEcCCCCEEEEEEecccccccCcCCCceEEEe-cCCC---ceEEcCCCCceeehhhcccCccceeCCCCceeEEEE
Confidence            4456799999999999874311 1000011111111 1111   0111111221         12234999999999987


Q ss_pred             ecCCCC---------------------------CCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979          263 WHHPNM---------------------------PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (623)
Q Consensus       263 ~~~~~~---------------------------p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~  315 (623)
                      .+...+                           |.....|++.+......+.  .......+.-..++....|..+.++.
T Consensus       226 ~~dt~V~~~~~~~~~~~~~yp~~~~~~ypk~g~~np~v~l~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~W~~~~~~~  303 (755)
T KOG2100|consen  226 FNDTKVETINLPGYTDDDQYPKSTNFHYPKAGAPNPAVSLFVVDLHDPPRLG--IPPPTNQRSGEYYVTNVKWDTTEKVL  303 (755)
T ss_pred             ecccccceEEeccccccccCcccceeecCCCCCCCCeEEEEEEeCCCceeec--cCCccccccCceEEEEEEEecCccEE
Confidence            554321                           2334455555533221000  00001110001455667788776644


Q ss_pred             EEE-eCCCCeeeEEEEecCCCeEEEEeecccccccc-cccccCc-ceeEEeecCCC-CEEEEEEEECC-eEEEEEEeCCC
Q 006979          316 FVT-DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-LWVFGIN-SYEIIQSHGEK-NLIACSYRQNG-RSYLGILDDFG  390 (623)
Q Consensus       316 ~~~-~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~-~w~~~~~-~~~~l~~s~~~-~~l~~~~~~~g-~~~L~~~d~~~  390 (623)
                      ++. ++.+....+-..|.. +. ..+....   ... .|..... ...+..   ++ ..+++....++ ..|+..+...+
T Consensus       304 ~~~~~r~~~~~~~~~cd~~-~~-~~~~~~~---~~~~~W~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~hi~~~~~~~  375 (755)
T KOG2100|consen  304 VVWTNREQNISVETLCDTP-GI-CRVVYEE---SSDGGWVEHQNVEPVFSS---DGSSYLKVDSVSDGGYNHIAYLKLSN  375 (755)
T ss_pred             EEEEccCCCeeeeEEecCc-cc-ceeeEec---cccccccccccccceEee---cCCceeEEEeeccCCEEEEEEEEcCC
Confidence            443 432222222334433 21 1222111   112 4765544 112221   44 44555555666 88988888777


Q ss_pred             C-ceeecccCCcceEee---eecCCEEEEEEecC-CCCCeEEEEEcCCCcceeeee----------EEEecc--------
Q 006979          391 H-SLSLLDIPFTDIDNI---TLGNDCLFVEGASG-VEPSSVAKVTLDDHKLKAVDF----------KVVWSS--------  447 (623)
Q Consensus       391 ~-~~~~lt~~~~~v~~~---~~~~~~~~~~~~s~-~~~~~ly~~~l~~~~~~~lt~----------~~~~~~--------  447 (623)
                      + ..+.++.+.|.+..+   +.+.++++|..... ....++|.+++.....+.+|-          ...++.        
T Consensus       376 ~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~  455 (755)
T KOG2100|consen  376 GSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLS  455 (755)
T ss_pred             CCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEE
Confidence            7 677888888876544   55677888877643 667789999887644332221          000000        


Q ss_pred             --CCCCc---cC------------------------CCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEE
Q 006979          448 --SPDTL---KY------------------------KSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLL  498 (623)
Q Consensus       448 --~~~~~---~~------------------------~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pli  498 (623)
                        .+...   +.                        ...++..+...+..  +|...++.+..|++  +++  .+++|++
T Consensus       456 ~~gP~~p~~~~~~~~~~~~~~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~--~~~~~~~~~~lP~~--~~~--~~kyPll  529 (755)
T KOG2100|consen  456 CSGPKVPDGQLTRHSSKNSKTIVVLETNEELKKTIENVALPIVEFGKIEI--DGITANAILILPPN--FDP--SKKYPLL  529 (755)
T ss_pred             ccCCCCCcceeeccccccceEEEEeccChhhHHHhhcccCCcceeEEEEe--ccEEEEEEEecCCC--CCC--CCCCCEE
Confidence              00000   00                        00111122222222  57788889999988  554  7799999


Q ss_pred             EEecCCCCCcccC---cCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          499 VKSHGGPTSEARG---ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       499 v~~hGg~~~~~~~---~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.+||||.++...   ..++....+..+|++|+.+|+||++++|..++..+.+++|..+++|++.+++++.+++.+|++|
T Consensus       530 v~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~r  609 (755)
T KOG2100|consen  530 VVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSR  609 (755)
T ss_pred             EEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHH
Confidence            9999999755543   3346666788999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcChHHHHHHHHh-cCC-CceeEEEecccCCCHHHhhhhccc
Q 006979          576 LCITGGSAGGYTTLAAL-AFR-DTFKAGASLYGVSIPVIISEELWS  619 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~-~~f~a~v~~~g~~d~~~~~~~~~~  619 (623)
                      |+|+|+|+|||+++.++ ..+ +.|||+|+++||+|+. +.+.++.
T Consensus       610 i~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~~t  654 (755)
T KOG2100|consen  610 VAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDSTYT  654 (755)
T ss_pred             eEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eeccccc
Confidence            99999999999999999 454 8999999999999998 7666554

>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.9e-24  Score=219.72  Aligned_cols=392  Identities=16%  Similarity=0.163  Sum_probs=261.4

Q ss_pred             ecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccC--CCcccceeeCCCCCEEEEEEecCCCCC
Q 006979          193 YADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMP  269 (623)
Q Consensus       193 ~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~--~~~~~~p~wSPDG~~la~~~~~~~~~p  269 (623)
                      +...+|.- ||.-|.+..++...    ....||...+.+.+.+.+......  ..+...-..+-+|+ +.+....+.-- 
T Consensus       184 ~~y~~w~~~dg~~l~~~t~~~~~----r~hkvy~h~~Gtdq~~Dvl~~~e~d~~~~vf~~~~kD~~~-~~i~si~~t~s-  257 (712)
T KOG2237|consen  184 VSYLAWAKQDGEDLLYGTEDENN----RPHKVYYHTLGTDQSEDVLLYEEKDEPKHVFISETKDSGF-YTINSISETCS-  257 (712)
T ss_pred             eEeeeecccCCceeeeeeecccc----CcceEEEEecccCCCcceEEEecCCCCeEEEEEEEecCce-EEEEEeeccCC-
Confidence            33455665 78777777766543    337899998877532222222221  12233334555554 44454333210 


Q ss_pred             CCceEEEEEEecCCC-cee--eeEEEcCCCCCccccCcCc-eeCCCCc-EEEEEeCCCCeeeEEEEecCCC---eEEEEe
Q 006979          270 WDKAELWVGYISENG-DVY--KRVCVAGFDPTIVESPTEP-KWSSKGE-LFFVTDRKNGFWNLHKWIESNN---EVLAIY  341 (623)
Q Consensus       270 ~~~~~L~v~d~~~~~-~~~--~~~~~~~~~~~~~~~~~~~-~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~---~~~~l~  341 (623)
                       ....+|.+|+...- .+.  ....+.+-+    -.+..- ....++. ++|..+.......+.+.+....   .++.+.
T Consensus       258 -~~~~vf~~d~~~~~~gl~~~~~~~v~~v~----~f~eh~~fi~~~~t~~~~~tn~~~p~y~l~r~~~~~~~~~~W~~v~  332 (712)
T KOG2237|consen  258 -PVNKVFLCDLSSPSDGLELLILPRVKGVD----CFVEHYDFITNEGTEFYFLTNKDAPNYYLLRIDVKEPEESKWETVF  332 (712)
T ss_pred             -ccceEEEEecccccCCcchheeeccchhh----hhhhhhhheeccCcceeeeccCCCCceeEEeeeccCccccccceee
Confidence             14478998876541 111  111111111    111111 2334566 7777776444566666665332   344555


Q ss_pred             ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe-CCCCceeecccCCcceEee--eecCCEEEEEEe
Q 006979          342 SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD-DFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGA  418 (623)
Q Consensus       342 ~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d-~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~  418 (623)
                      .+..... ..|.      .+.    +++.+++....+-..-+-..+ +++..++.+..+.+.+...  ..+...+.|..+
T Consensus       333 ~e~~~~v-l~~~------~~~----~~~~ll~~~~~~l~~i~q~~~~l~g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~s  401 (712)
T KOG2237|consen  333 AEHEKDV-LEDV------DMV----NDNLLLVCYMSDLKHILQVRDLLDGSLLRSFPLPVGSVSGTSGDFKSSTIRFQFS  401 (712)
T ss_pred             cccchhh-hhhh------hhh----cCceEEEEEecCchhhccccccccCceeeeecCCCCcccccccCCCCceEEEEEe
Confidence            4322211 1222      122    555566555443322221122 4456677777777666555  556788999999


Q ss_pred             cCCCCCeEEEEEcCCCcceeeeeEEEeccCCC--CccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCC
Q 006979          419 SGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD--TLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPP  496 (623)
Q Consensus       419 s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~P  496 (623)
                      ++-+|+.||.+|+..++++    ..+++....  ..++.+.+ ..+++.+++. ||..|++++..-+..+    ..++.|
T Consensus       402 S~l~P~~iy~yDl~~~~~e----~~vf~e~~~~lpg~~~s~y-~~~r~~~~Sk-DGt~VPM~Iv~kk~~k----~dg~~P  471 (712)
T KOG2237|consen  402 SFLTPGSIYDYDLANGKPE----PSVFREITVVLPGFDASDY-VVERIEVSSK-DGTKVPMFIVYKKDIK----LDGSKP  471 (712)
T ss_pred             ccCCCCeEEEeeccCCCCC----CcceeeeccccCcccccce-EEEEEEEecC-CCCccceEEEEechhh----hcCCCc
Confidence            9999999999999998642    233333221  23444433 7889999998 9999999888755432    256789


Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCce
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL  576 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv  576 (623)
                      ++|+.||+.+-...+.|......|..+|++.+..|.||+|++|+.|++.....-..+.++|++++++||+++|++.|+|+
T Consensus       472 ~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL  551 (712)
T KOG2237|consen  472 LLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKL  551 (712)
T ss_pred             eEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccce
Confidence            99999999887778888888788889999999999999999999999988777778889999999999999999999999


Q ss_pred             EEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhhh
Q 006979          577 CITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       577 ~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~~  616 (623)
                      +|.|+|+||.++.+++ .+|++|.|+|+..|+.|+......
T Consensus       552 ~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~  592 (712)
T KOG2237|consen  552 AIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKD  592 (712)
T ss_pred             eEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhcc
Confidence            9999999999999999 899999999999999999876543

>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]

Probab=99.92  E-value=3.2e-23  Score=213.50  Aligned_cols=232  Identities=19%  Similarity=0.219  Sum_probs=192.2

Q ss_pred             CEEEEEEEECCeEEEEEEeCCCCceeecccCCc-ceE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEe
Q 006979          369 NLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT-DID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVW  445 (623)
Q Consensus       369 ~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~-~v~--~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~  445 (623)
                      +.++...-.+-..+|.+.+..+-..+.|..+.. .+.  ..+.+++.+++...+..+|+.+|++++.+++++.+      
T Consensus       307 ~~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~i------  380 (648)
T COG1505         307 DKLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVI------  380 (648)
T ss_pred             CeEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCceehhh------
Confidence            345544444555567777777655566766533 233  33667888999999999999999999999886544      


Q ss_pred             ccCCCCccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCce
Q 006979          446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW  525 (623)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~  525 (623)
                      ...+ ..++.+.+ ..++....+. ||++|+.++.. ++.++    + +.|++|+.|||......+.|+.....|.++|.
T Consensus       381 k~~p-~~FDa~~~-~veQ~~atSk-DGT~IPYFiv~-K~~~~----d-~~pTll~aYGGF~vsltP~fs~~~~~WLerGg  451 (648)
T COG1505         381 REQP-VQFDADNY-EVEQFFATSK-DGTRIPYFIVR-KGAKK----D-ENPTLLYAYGGFNISLTPRFSGSRKLWLERGG  451 (648)
T ss_pred             hhcc-CCcCccCc-eEEEEEEEcC-CCccccEEEEe-cCCcC----C-CCceEEEeccccccccCCccchhhHHHHhcCC
Confidence            3333 45677665 6778888887 99999999887 66331    4 67999999999988889999988899999999


Q ss_pred             EEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEec
Q 006979          526 AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASL  604 (623)
Q Consensus       526 ~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~  604 (623)
                      +.+..|.||+|+||.+|+++..+.-....++|+.++++.|+++|+.-|++|+|.|+|.||.++..++ ++|++|-|+|+.
T Consensus       452 ~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~e  531 (648)
T COG1505         452 VFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCE  531 (648)
T ss_pred             eEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeec
Confidence            9999999999999999999998888888899999999999999999999999999999999999999 889999999999


Q ss_pred             ccCCCHHHhhh
Q 006979          605 YGVSIPVIISE  615 (623)
Q Consensus       605 ~g~~d~~~~~~  615 (623)
                      +|+.||.+|..
T Consensus       532 vPllDMlRYh~  542 (648)
T COG1505         532 VPLLDMLRYHL  542 (648)
T ss_pred             cchhhhhhhcc
Confidence            99999998844

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.90  E-value=2.3e-21  Score=206.21  Aligned_cols=249  Identities=15%  Similarity=0.143  Sum_probs=177.7

Q ss_pred             CCEEEEEeCC--------CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCE--EEEEEeccCCCCCCceeEE
Q 006979          154 GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR--YVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       154 ~d~l~f~~~~--------~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~--l~~v~~~~~~~~~~~~~~L  223 (623)
                      +.+|+|+...        ..+||++|.+++  .+++||..    ......|+|||||++  ++|++....      ..+|
T Consensus       146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~--~~~~lt~~----~~~~~sP~wSPDG~~~~~~y~S~~~g------~~~I  213 (428)
T PRK01029        146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQ--NLRPLTQE----HSLSITPTWMHIGSGFPYLYVSYKLG------VPKI  213 (428)
T ss_pred             cCEEEEEEeeCCcccccccceEEEEcCCCC--CceEcccC----CCCcccceEccCCCceEEEEEEccCC------CceE
Confidence            4578887532        236999999877  78999985    334467999999987  555665432      2689


Q ss_pred             EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEE--EecCCCceeeeEEEcCCCCCccc
Q 006979          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG--YISENGDVYKRVCVAGFDPTIVE  301 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~--d~~~~~~~~~~~~~~~~~~~~~~  301 (623)
                      |++++++|+   .++|+........|+|||||++|+|+....     ...++|+.  +++.+..-...++..+..    .
T Consensus       214 ~~~~l~~g~---~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~-----g~~di~~~~~~~~~g~~g~~~~lt~~~~----~  281 (428)
T PRK01029        214 FLGSLENPA---GKKILALQGNQLMPTFSPRKKLLAFISDRY-----GNPDLFIQSFSLETGAIGKPRRLLNEAF----G  281 (428)
T ss_pred             EEEECCCCC---ceEeecCCCCccceEECCCCCEEEEEECCC-----CCcceeEEEeecccCCCCcceEeecCCC----C
Confidence            999999998   677765444445699999999999997332     13357775  444321101233433322    2


Q ss_pred             cCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCC--CeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979          302 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN--NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (623)
Q Consensus       302 ~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~--~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~  378 (623)
                      ....|.|+|||+ |+|.+++ .|..+||+++.++  ++.+.++........+.|++            ||+.|++....+
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~-~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP------------DG~~Laf~~~~~  348 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNK-DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP------------DGKKIAFCSVIK  348 (428)
T ss_pred             CcCCeEECCCCCEEEEEECC-CCCceEEEEECcccccceEEeccCCCCccceeECC------------CCCEEEEEEcCC
Confidence            346799999999 9999887 6778999988753  44667775544556677765            999999998888


Q ss_pred             CeEEEEEEeCCCCceeecccCCcceE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979          379 GRSYLGILDDFGHSLSLLDIPFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       379 g~~~L~~~d~~~~~~~~lt~~~~~v~--~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                      |..+|+++|+++++.++|+.....+.  .++++++.++|.... .....||.+++++++.++|+
T Consensus       349 g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        349 GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKKTRKIV  411 (428)
T ss_pred             CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEee
Confidence            88899999999999999986533322  237788888887654 34468999999998866654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.89  E-value=3.6e-21  Score=206.62  Aligned_cols=243  Identities=14%  Similarity=0.196  Sum_probs=183.8

Q ss_pred             CEEEEEeCCCC------cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          155 DTVIFSNYKDQ------RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       155 d~l~f~~~~~~------~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      .+|+|+....+      +||++|.+++  ..++|+..    ......+.|||||++|+|+......      .+||++|+
T Consensus       166 ~~iafv~~~~~~~~~~~~l~~~d~dg~--~~~~lt~~----~~~v~~p~wSpDG~~lay~s~~~g~------~~i~~~dl  233 (435)
T PRK05137        166 TRIVYVAESGPKNKRIKRLAIMDQDGA--NVRYLTDG----SSLVLTPRFSPNRQEITYMSYANGR------PRVYLLDL  233 (435)
T ss_pred             CeEEEEEeeCCCCCcceEEEEECCCCC--CcEEEecC----CCCeEeeEECCCCCEEEEEEecCCC------CEEEEEEC
Confidence            47888765433      6999999876  78888875    3346679999999999998764322      67999999


Q ss_pred             CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       229 ~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      .+++   .++++...+....|+|||||++|+|.....     ...+||++|++++    ..+.++...    .....+.|
T Consensus       234 ~~g~---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~----~~~~Lt~~~----~~~~~~~~  297 (435)
T PRK05137        234 ETGQ---RELVGNFPGMTFAPRFSPDGRKVVMSLSQG-----GNTDIYTMDLRSG----TTTRLTDSP----AIDTSPSY  297 (435)
T ss_pred             CCCc---EEEeecCCCcccCcEECCCCCEEEEEEecC-----CCceEEEEECCCC----ceEEccCCC----CccCceeE
Confidence            9987   677765555556799999999999986432     2467999999876    233344433    34567999


Q ss_pred             CCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       309 s~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                      +|||+ ++|.+++ .|..+||++|+++++.++++........+.|++            +|+.|++.....+..+|+++|
T Consensus       298 spDG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp------------dG~~ia~~~~~~~~~~i~~~d  364 (435)
T PRK05137        298 SPDGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP------------RGDLIAFTKQGGGQFSIGVMK  364 (435)
T ss_pred             cCCCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcccCeEECC------------CCCEEEEEEcCCCceEEEEEE
Confidence            99999 8898887 677899999999988888886544455566665            899999988777778999999


Q ss_pred             CCCCceeecccCCcceE--eeeecCCEEEEEEecCCCC--CeEEEEEcCCCcceee
Q 006979          388 DFGHSLSLLDIPFTDID--NITLGNDCLFVEGASGVEP--SSVAKVTLDDHKLKAV  439 (623)
Q Consensus       388 ~~~~~~~~lt~~~~~v~--~~~~~~~~~~~~~~s~~~~--~~ly~~~l~~~~~~~l  439 (623)
                      ++++..+.++.+. .+.  .++++++.++|........  ..||++++++++.++|
T Consensus       365 ~~~~~~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l  419 (435)
T PRK05137        365 PDGSGERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV  419 (435)
T ss_pred             CCCCceEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence            9888888887653 222  3388899999988655443  5899999988775443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.89  E-value=8e-21  Score=202.82  Aligned_cols=243  Identities=14%  Similarity=0.146  Sum_probs=180.6

Q ss_pred             CEEEEEeCCC-----CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          155 DTVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       155 d~l~f~~~~~-----~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      ++++|+....     .+||++|.++.  ..++++..    ......|+|||||++|+|+......      .+||++|++
T Consensus       164 ~riayv~~~~~~~~~~~l~~~d~dg~--~~~~lt~~----~~~~~~p~wSPDG~~la~~s~~~g~------~~i~i~dl~  231 (429)
T PRK03629        164 TRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESGR------SALVIQTLA  231 (429)
T ss_pred             CeEEEEEeeCCCCcceeEEEEcCCCC--CCEEeecC----CCceeeeEEcCCCCEEEEEEecCCC------cEEEEEECC
Confidence            4677775432     26999999876  67888875    3456789999999999998754322      679999999


Q ss_pred             CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws  309 (623)
                      +|+   .+.++........|.|||||++|+|+....     ...+||++|++++.   .. .+....    .....+.|+
T Consensus       232 ~G~---~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~tg~---~~-~lt~~~----~~~~~~~wS  295 (429)
T PRK03629        232 NGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLASGQ---IR-QVTDGR----SNNTEPTWF  295 (429)
T ss_pred             CCC---eEEccCCCCCcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECCCCC---EE-EccCCC----CCcCceEEC
Confidence            987   677776555566799999999999986432     23569999998762   23 333333    355789999


Q ss_pred             CCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       310 ~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      |||+ ++|.+++ .+..+||.+|+++++.++++........+.|++            ||+.+++....++..+|+++|+
T Consensus       296 PDG~~I~f~s~~-~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------DG~~Ia~~~~~~g~~~I~~~dl  362 (429)
T PRK03629        296 PDSQNLAYTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQDL  362 (429)
T ss_pred             CCCCEEEEEeCC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEEccCCCceEEEEEC
Confidence            9999 8899887 677899999999888888864433333444543            8999999888888889999999


Q ss_pred             CCCceeecccCCcce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          389 FGHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       389 ~~~~~~~lt~~~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      ++++.+.|+...... ..+++|+..+++..... ....|+.++++++..++|
T Consensus       363 ~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~-~~~~l~~~~~~G~~~~~l  413 (429)
T PRK03629        363 ATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQG-MGSVLNLVSTDGRFKARL  413 (429)
T ss_pred             CCCCeEEeCCCCCCCCceECCCCCEEEEEEcCC-CceEEEEEECCCCCeEEC
Confidence            999999888653222 23488898888877643 345789999987765544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.88  E-value=4.1e-20  Score=198.17  Aligned_cols=242  Identities=15%  Similarity=0.176  Sum_probs=177.4

Q ss_pred             EEEEEeCCC-----CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          156 TVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       156 ~l~f~~~~~-----~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      +++|+....     .+|+++|.++.  ..++|+..    ......+.|||||++|+|+.....      ..+||++|+.+
T Consensus       184 riayv~~~~~~~~~~~l~i~d~dG~--~~~~l~~~----~~~~~~p~wSPDG~~La~~s~~~g------~~~L~~~dl~t  251 (448)
T PRK04792        184 RIAYVVVNDKDKYPYQLMIADYDGY--NEQMLLRS----PEPLMSPAWSPDGRKLAYVSFENR------KAEIFVQDIYT  251 (448)
T ss_pred             EEEEEEeeCCCCCceEEEEEeCCCC--CceEeecC----CCcccCceECCCCCEEEEEEecCC------CcEEEEEECCC
Confidence            566654332     25899998766  67888875    445678999999999999876432      26799999999


Q ss_pred             CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979          231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (623)
Q Consensus       231 g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~  310 (623)
                      ++   .++++........|.|||||++|+|.....     ...+||++|++++.    .+.++...    .....+.|+|
T Consensus       252 g~---~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~tg~----~~~lt~~~----~~~~~p~wSp  315 (448)
T PRK04792        252 QV---REKVTSFPGINGAPRFSPDGKKLALVLSKD-----GQPEIYVVDIATKA----LTRITRHR----AIDTEPSWHP  315 (448)
T ss_pred             CC---eEEecCCCCCcCCeeECCCCCEEEEEEeCC-----CCeEEEEEECCCCC----eEECccCC----CCccceEECC
Confidence            87   667765555556799999999999986433     25679999998762    23333332    3456899999


Q ss_pred             CCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC
Q 006979          311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (623)
Q Consensus       311 DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~  389 (623)
                      ||+ ++|.+++ .+..+||++|+++++.+.|+........+.|++            ||+.++++....+..+||++|++
T Consensus       316 DG~~I~f~s~~-~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp------------DG~~l~~~~~~~g~~~I~~~dl~  382 (448)
T PRK04792        316 DGKSLIFTSER-GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP------------DGRSMIMVNRTNGKFNIARQDLE  382 (448)
T ss_pred             CCCEEEEEECC-CCCceEEEEECCCCCEEEEecCCCCCcCeeECC------------CCCEEEEEEecCCceEEEEEECC
Confidence            999 8888877 677899999999998888874322223345554            89999998887888899999999


Q ss_pred             CCceeecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          390 GHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       390 ~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      +++.+.|+....... .++++++.++|..... ....||.++++++..++|
T Consensus       383 ~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~-g~~~l~~~~~~G~~~~~l  432 (448)
T PRK04792        383 TGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQ-GKQVLAAVSIDGRFKARL  432 (448)
T ss_pred             CCCeEEccCCCCCCCceECCCCCEEEEEEecC-CceEEEEEECCCCceEEC
Confidence            999988886533222 3488899988877543 345799999877665443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.88  E-value=3.2e-20  Score=196.12  Aligned_cols=230  Identities=10%  Similarity=0.064  Sum_probs=171.6

Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCE-EEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~-l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~  243 (623)
                      .+||+.|.++.  .+++++..    . ....+.|||||++ ++|+......      .+||++|+.+|+   .++|+...
T Consensus       169 ~~l~~~d~dg~--~~~~~~~~----~-~~~~p~wSpDG~~~i~y~s~~~~~------~~Iyv~dl~tg~---~~~lt~~~  232 (419)
T PRK04043        169 SNIVLADYTLT--YQKVIVKG----G-LNIFPKWANKEQTAFYYTSYGERK------PTLYKYNLYTGK---KEKIASSQ  232 (419)
T ss_pred             ceEEEECCCCC--ceeEEccC----C-CeEeEEECCCCCcEEEEEEccCCC------CEEEEEECCCCc---EEEEecCC
Confidence            36999999876  67778874    2 4456999999997 5555443222      589999999998   78887665


Q ss_pred             CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCC
Q 006979          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN  322 (623)
Q Consensus       244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~  322 (623)
                      +....|.|||||++|+|.....     ...+||+++++++    ..+.++...    .....+.|+|||+ ++|.+++ .
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~g----~~~~LT~~~----~~d~~p~~SPDG~~I~F~Sdr-~  298 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTNTK----TLTQITNYP----GIDVNGNFVEDDKRIVFVSDR-L  298 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccC-----CCcEEEEEECCCC----cEEEcccCC----CccCccEECCCCCEEEEEECC-C
Confidence            5566799999999999987443     3578999999876    233344333    2345789999999 9999988 7


Q ss_pred             CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC------CeEEEEEEeCCCCceeec
Q 006979          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN------GRSYLGILDDFGHSLSLL  396 (623)
Q Consensus       323 g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~------g~~~L~~~d~~~~~~~~l  396 (623)
                      |..+||++|+++++.++++....  ..+.|++            ||+.++++....      +..+||++|++++..++|
T Consensus       299 g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SP------------DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L  364 (419)
T PRK04043        299 GYPNIFMKKLNSGSVEQVVFHGK--NNSSVST------------YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL  364 (419)
T ss_pred             CCceEEEEECCCCCeEeCccCCC--cCceECC------------CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence            88899999999999888875321  1235554            999999888654      447999999999999999


Q ss_pred             ccCCcce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          397 DIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       397 t~~~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      +...... -.++++++.++|.... .....|+.+++++....+|
T Consensus       365 T~~~~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~~~~~l  407 (419)
T PRK04043        365 TANGVNQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYNKSFLF  407 (419)
T ss_pred             CCCCCcCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCCeeEEe
Confidence            8763322 2348899999998754 4556799999988765443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.87  E-value=4.4e-20  Score=196.36  Aligned_cols=263  Identities=14%  Similarity=0.219  Sum_probs=181.5

Q ss_pred             CceEEcCCCcEEEEeecCCCC---CceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--E--EEEEeCCC
Q 006979           92 GGTAVDGHGRLIWLESRPTEA---GRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--T--VIFSNYKD  164 (623)
Q Consensus        92 ~~~~~~~~~~~~~l~~~~~e~---g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~--l~f~~~~~  164 (623)
                      +++.+. +.++.|+..+...+   .+..||..+.+ |+..+.++.....         ..+-.|++|  .  ++|+...+
T Consensus       140 g~~g~~-~~~iayv~~~~~~~~~~~~~~l~~~d~d-G~~~~~lt~~~~~---------~~sP~wSPDG~~~~~~y~S~~~  208 (428)
T PRK01029        140 GVPGIS-SGKIIFSLSTTNSDTELKQGELWSVDYD-GQNLRPLTQEHSL---------SITPTWMHIGSGFPYLYVSYKL  208 (428)
T ss_pred             CCCccc-cCEEEEEEeeCCcccccccceEEEEcCC-CCCceEcccCCCC---------cccceEccCCCceEEEEEEccC
Confidence            456666 78888887654322   25689988876 3466777653311         122344444  4  55566554


Q ss_pred             C--cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE--EcCCCCcccceecc
Q 006979          165 Q--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI--ALNGQNIQEPKVLV  240 (623)
Q Consensus       165 ~--~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i--dl~~g~~~~~~~l~  240 (623)
                      +  +||++++++|  ..++|+..    ......+.|||||++|+|+....+.      .++|+.  +++++.....++++
T Consensus       209 g~~~I~~~~l~~g--~~~~lt~~----~g~~~~p~wSPDG~~Laf~s~~~g~------~di~~~~~~~~~g~~g~~~~lt  276 (428)
T PRK01029        209 GVPKIFLGSLENP--AGKKILAL----QGNQLMPTFSPRKKLLAFISDRYGN------PDLFIQSFSLETGAIGKPRRLL  276 (428)
T ss_pred             CCceEEEEECCCC--CceEeecC----CCCccceEECCCCCEEEEEECCCCC------cceeEEEeecccCCCCcceEee
Confidence            3  6999999988  78888874    2223458999999999998753322      346654  55542111156777


Q ss_pred             cCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEE
Q 006979          241 SGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT  318 (623)
Q Consensus       241 ~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~  318 (623)
                      .+. .....|.|||||++|+|++.. .+    ..+||+++++..+.  ..+.++...    .....|.|+|||+ |+|..
T Consensus       277 ~~~~~~~~~p~wSPDG~~Laf~s~~-~g----~~~ly~~~~~~~g~--~~~~lt~~~----~~~~~p~wSPDG~~Laf~~  345 (428)
T PRK01029        277 NEAFGTQGNPSFSPDGTRLVFVSNK-DG----RPRIYIMQIDPEGQ--SPRLLTKKY----RNSSCPAWSPDGKKIAFCS  345 (428)
T ss_pred             cCCCCCcCCeEECCCCCEEEEEECC-CC----CceEEEEECccccc--ceEEeccCC----CCccceeECCCCCEEEEEE
Confidence            543 345679999999999999743 22    45799999865321  234444433    3456899999999 88888


Q ss_pred             eCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeeccc
Q 006979          319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI  398 (623)
Q Consensus       319 ~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~  398 (623)
                      .. .|..+|+++|+++++.++++........+.|++            |++.|+++....+...||++|+++++.++|+.
T Consensus       346 ~~-~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp------------DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        346 VI-KGVRQICVYDLATGRDYQLTTSPENKESPSWAI------------DSLHLVYSAGNSNESELYLISLITKKTRKIVI  412 (428)
T ss_pred             cC-CCCcEEEEEECCCCCeEEccCCCCCccceEECC------------CCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            76 677899999999999988886544455677765            88999998888888999999999999988876


Q ss_pred             CCc
Q 006979          399 PFT  401 (623)
Q Consensus       399 ~~~  401 (623)
                      ..+
T Consensus       413 ~~g  415 (428)
T PRK01029        413 GSG  415 (428)
T ss_pred             CCC
Confidence            543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.86  E-value=1.1e-19  Score=195.22  Aligned_cols=241  Identities=15%  Similarity=0.197  Sum_probs=176.5

Q ss_pred             EEEEEeCCC------CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          156 TVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       156 ~l~f~~~~~------~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      +++|+....      -+|+++|.+++  ..++++..    ......+.|||||++|+|+..+..      ..+||++|++
T Consensus       164 ~ia~v~~~~~~~~~~~~l~~~d~~g~--~~~~l~~~----~~~~~~p~wSpDG~~la~~s~~~~------~~~l~~~~l~  231 (430)
T PRK00178        164 RILYVTAERFSVNTRYTLQRSDYDGA--RAVTLLQS----REPILSPRWSPDGKRIAYVSFEQK------RPRIFVQNLD  231 (430)
T ss_pred             eEEEEEeeCCCCCcceEEEEECCCCC--CceEEecC----CCceeeeeECCCCCEEEEEEcCCC------CCEEEEEECC
Confidence            577764322      14899999876  67777764    344567899999999999876432      2579999999


Q ss_pred             CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws  309 (623)
                      +++   .++++........|+|||||++|+|.....     ...+||++|++++.    .+.+....    .....+.|+
T Consensus       232 ~g~---~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~~~~----~~~lt~~~----~~~~~~~~s  295 (430)
T PRK00178        232 TGR---REQITNFEGLNGAPAWSPDGSKLAFVLSKD-----GNPEIYVMDLASRQ----LSRVTNHP----AIDTEPFWG  295 (430)
T ss_pred             CCC---EEEccCCCCCcCCeEECCCCCEEEEEEccC-----CCceEEEEECCCCC----eEEcccCC----CCcCCeEEC
Confidence            987   677766555556799999999999987433     24679999998762    23344333    345678999


Q ss_pred             CCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       310 ~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      |||+ ++|.+++ .|..+||.+|+.+++.++++........+.|++            +++.+++....++..+|+++|+
T Consensus       296 pDg~~i~f~s~~-~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------dg~~i~~~~~~~~~~~l~~~dl  362 (430)
T PRK00178        296 KDGRTLYFTSDR-GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA------------DGKTLVMVHRQDGNFHVAAQDL  362 (430)
T ss_pred             CCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccceEECC------------CCCEEEEEEccCCceEEEEEEC
Confidence            9999 8898887 678899999999888888874322223344543            8999999987777788999999


Q ss_pred             CCCceeecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCccee
Q 006979          389 FGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA  438 (623)
Q Consensus       389 ~~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~  438 (623)
                      ++++.+.|+....... .++++++.++|..... ....||.++++++..++
T Consensus       363 ~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~-g~~~l~~~~~~g~~~~~  412 (430)
T PRK00178        363 QRGSVRILTDTSLDESPSVAPNGTMLIYATRQQ-GRGVLMLVSINGRVRLP  412 (430)
T ss_pred             CCCCEEEccCCCCCCCceECCCCCEEEEEEecC-CceEEEEEECCCCceEE
Confidence            9999999886533322 3488888888887643 34579999987765433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.86  E-value=1.1e-19  Score=194.91  Aligned_cols=242  Identities=16%  Similarity=0.172  Sum_probs=177.8

Q ss_pred             EEEEEeCC------CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          156 TVIFSNYK------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       156 ~l~f~~~~------~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      +|+|+...      ..+||++|.+++  .+++|+..    ......+.|||||++|+|++....      ..+||++|++
T Consensus       169 ~ia~v~~~~~~~~~~~~l~i~D~~g~--~~~~lt~~----~~~v~~p~wSpDg~~la~~s~~~~------~~~l~~~dl~  236 (433)
T PRK04922        169 RIAYVTVSGAGGAMRYALQVADSDGY--NPQTILRS----AEPILSPAWSPDGKKLAYVSFERG------RSAIYVQDLA  236 (433)
T ss_pred             eEEEEEEeCCCCCceEEEEEECCCCC--CceEeecC----CCccccccCCCCCCEEEEEecCCC------CcEEEEEECC
Confidence            56666432      125999998765  78888875    345678999999999999875432      2679999999


Q ss_pred             CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws  309 (623)
                      +++   .++++........|+|||||++|+|....+     ...+||++|++++.    .+.+....    .....+.|+
T Consensus       237 ~g~---~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~~g~----~~~lt~~~----~~~~~~~~s  300 (433)
T PRK04922        237 TGQ---RELVASFRGINGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLGSRQ----LTRLTNHF----GIDTEPTWA  300 (433)
T ss_pred             CCC---EEEeccCCCCccCceECCCCCEEEEEEeCC-----CCceEEEEECCCCC----eEECccCC----CCccceEEC
Confidence            887   666765444556799999999999986443     24579999998762    23333332    334578999


Q ss_pred             CCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       310 ~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      |||+ ++|.+++ .|..+||.+|..+++.++++........+.|++            +++.+++....++..+|+++|+
T Consensus       301 pDG~~l~f~sd~-~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~~~~~~~~~I~v~d~  367 (433)
T PRK04922        301 PDGKSIYFTSDR-GGRPQIYRVAASGGSAERLTFQGNYNARASVSP------------DGKKIAMVHGSGGQYRIAVMDL  367 (433)
T ss_pred             CCCCEEEEEECC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEECCCCceeEEEEEC
Confidence            9999 8888887 677899999998888888874433333455654            8999999877677789999999


Q ss_pred             CCCceeecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          389 FGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       389 ~~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      ++++.+.|+.+..... .++++++.++|.... .....||.++++++..++|
T Consensus       368 ~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~-~g~~~L~~~~~~g~~~~~l  418 (433)
T PRK04922        368 STGSVRTLTPGSLDESPSFAPNGSMVLYATRE-GGRGVLAAVSTDGRVRQRL  418 (433)
T ss_pred             CCCCeEECCCCCCCCCceECCCCCEEEEEEec-CCceEEEEEECCCCceEEc
Confidence            9999998886543322 348888888888765 3446899999987765444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.86  E-value=1.5e-19  Score=193.17  Aligned_cols=240  Identities=15%  Similarity=0.136  Sum_probs=175.3

Q ss_pred             CEEEEEeCCC--CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979          155 DTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (623)
Q Consensus       155 d~l~f~~~~~--~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~  232 (623)
                      .+++|+....  .+||++|.++.  .+++++..    ......++|||||++|+|+.....      ..+||++|+++++
T Consensus       164 ~~iayv~~~~~~~~L~~~D~dG~--~~~~l~~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~I~~~dl~~g~  231 (427)
T PRK02889        164 TRIAYVIKTGNRYQLQISDADGQ--NAQSALSS----PEPIISPAWSPDGTKLAYVSFESK------KPVVYVHDLATGR  231 (427)
T ss_pred             cEEEEEEccCCccEEEEECCCCC--CceEeccC----CCCcccceEcCCCCEEEEEEccCC------CcEEEEEECCCCC
Confidence            4677776433  36999998765  67777764    344668999999999999875432      2579999999987


Q ss_pred             cccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       233 ~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                         .++++........|+|||||++|+|....+     ...+||++|++++.    .+.+....    .....+.|+|||
T Consensus       232 ---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~----~~~lt~~~----~~~~~~~wSpDG  295 (427)
T PRK02889        232 ---RRVVANFKGSNSAPAWSPDGRTLAVALSRD-----GNSQIYTVNADGSG----LRRLTQSS----GIDTEPFFSPDG  295 (427)
T ss_pred             ---EEEeecCCCCccceEECCCCCEEEEEEccC-----CCceEEEEECCCCC----cEECCCCC----CCCcCeEEcCCC
Confidence               667765445556799999999999976333     24679999987662    23333332    344678999999


Q ss_pred             c-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCC
Q 006979          313 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH  391 (623)
Q Consensus       313 ~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~  391 (623)
                      + ++|.+++ .|..+||.++..+++.++++........+.|++            +|+.+++.+..++..+|+++|++++
T Consensus       296 ~~l~f~s~~-~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        296 RSIYFTSDR-GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP------------DGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CEEEEEecC-CCCcEEEEEECCCCceEEEecCCCCcCceEECC------------CCCEEEEEEccCCcEEEEEEECCCC
Confidence            9 8888887 677899999988888777774432233455554            8999999888778789999999999


Q ss_pred             ceeecccCCcce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          392 SLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       392 ~~~~lt~~~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      +.++++...... -.++++++.++|...... ...||.+++++...
T Consensus       363 ~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g-~~~l~~~~~~g~~~  407 (427)
T PRK02889        363 QVTALTDTTRDESPSFAPNGRYILYATQQGG-RSVLAAVSSDGRIK  407 (427)
T ss_pred             CeEEccCCCCccCceECCCCCEEEEEEecCC-CEEEEEEECCCCce
Confidence            998887653221 133888999988876543 46799999866543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=4.7e-19  Score=187.20  Aligned_cols=252  Identities=9%  Similarity=0.053  Sum_probs=175.2

Q ss_pred             EEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCE-EEEEeCC--CCcEEEEe
Q 006979           95 AVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYK--DQRLYKHS  171 (623)
Q Consensus        95 ~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~-l~f~~~~--~~~l~~~d  171 (623)
                      .|+ ...+|+......  .+..||..+.+ |...+.++......        -..|.++++. ++|+...  ..+||++|
T Consensus       152 ~f~-~r~~~v~~~~~~--~~~~l~~~d~d-g~~~~~~~~~~~~~--------~p~wSpDG~~~i~y~s~~~~~~~Iyv~d  219 (419)
T PRK04043        152 DWM-KRKVVFSKYTGP--KKSNIVLADYT-LTYQKVIVKGGLNI--------FPKWANKEQTAFYYTSYGERKPTLYKYN  219 (419)
T ss_pred             Cce-eeEEEEEEccCC--CcceEEEECCC-CCceeEEccCCCeE--------eEEECCCCCcEEEEEEccCCCCEEEEEE
Confidence            344 455666552221  35678888776 22344444322100        1234444444 6666554  35699999


Q ss_pred             CCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceee
Q 006979          172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRM  251 (623)
Q Consensus       172 ~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~w  251 (623)
                      +.++  +.++|+..    ......+.|||||++|+++.....      ..+||++|+++++   .++|+........|.|
T Consensus       220 l~tg--~~~~lt~~----~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~  284 (419)
T PRK04043        220 LYTG--KKEKIASS----QGMLVVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNTKT---LTQITNYPGIDVNGNF  284 (419)
T ss_pred             CCCC--cEEEEecC----CCcEEeeEECCCCCEEEEEEccCC------CcEEEEEECCCCc---EEEcccCCCccCccEE
Confidence            9988  78888864    333445789999999999876432      2789999999988   7888876655667999


Q ss_pred             CCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCC-----Cee
Q 006979          252 DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-----GFW  325 (623)
Q Consensus       252 SPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~-----g~~  325 (623)
                      ||||++|+|++ ++.    ...+||++|++++.   ..++... .    ..  .+.|+|||+ ++|++...+     +..
T Consensus       285 SPDG~~I~F~S-dr~----g~~~Iy~~dl~~g~---~~rlt~~-g----~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~  349 (419)
T PRK04043        285 VEDDKRIVFVS-DRL----GYPNIFMKKLNSGS---VEQVVFH-G----KN--NSSVSTYKNYIVYSSRETNNEFGKNTF  349 (419)
T ss_pred             CCCCCEEEEEE-CCC----CCceEEEEECCCCC---eEeCccC-C----Cc--CceECCCCCEEEEEEcCCCcccCCCCc
Confidence            99999999998 433    24679999998773   3343332 2    11  369999999 888876521     336


Q ss_pred             eEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCc
Q 006979          326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT  401 (623)
Q Consensus       326 ~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~  401 (623)
                      +|+.+|+++++.+.|+... ....|.|++            ||+.++|+....+...|+.++++++...+|....+
T Consensus       350 ~I~v~d~~~g~~~~LT~~~-~~~~p~~SP------------DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g  412 (419)
T PRK04043        350 NLYLISTNSDYIRRLTANG-VNQFPRFSS------------DGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG  412 (419)
T ss_pred             EEEEEECCCCCeEECCCCC-CcCCeEECC------------CCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence            8999999999999998653 223466765            99999999988889999999999887777765433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=7.7e-19  Score=188.60  Aligned_cols=248  Identities=15%  Similarity=0.183  Sum_probs=175.1

Q ss_pred             CCcEEEEeecCCC-CCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCC--CCcEEEEeCC
Q 006979           99 HGRLIWLESRPTE-AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYK--DQRLYKHSID  173 (623)
Q Consensus        99 ~~~~~~l~~~~~e-~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~--~~~l~~~d~~  173 (623)
                      ..+|.|+...... .-+..||.++.+ |+..+.++.....         .....+++|  .|+|....  +.+||++|+.
T Consensus       165 ~~~iafv~~~~~~~~~~~~l~~~d~d-g~~~~~lt~~~~~---------v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~  234 (435)
T PRK05137        165 DTRIVYVAESGPKNKRIKRLAIMDQD-GANVRYLTDGSSL---------VLTPRFSPNRQEITYMSYANGRPRVYLLDLE  234 (435)
T ss_pred             CCeEEEEEeeCCCCCcceEEEEECCC-CCCcEEEecCCCC---------eEeeEECCCCCEEEEEEecCCCCEEEEEECC
Confidence            5678888755321 126678888765 3345556543211         223344444  78887644  3469999999


Q ss_pred             CCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCC
Q 006979          174 SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP  253 (623)
Q Consensus       174 ~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSP  253 (623)
                      ++  ..++++..    ......+.|||||++|+++......      .+||++|++++.   .++|+........|.|||
T Consensus       235 ~g--~~~~l~~~----~g~~~~~~~SPDG~~la~~~~~~g~------~~Iy~~d~~~~~---~~~Lt~~~~~~~~~~~sp  299 (435)
T PRK05137        235 TG--QRELVGNF----PGMTFAPRFSPDGRKVVMSLSQGGN------TDIYTMDLRSGT---TTRLTDSPAIDTSPSYSP  299 (435)
T ss_pred             CC--cEEEeecC----CCcccCcEECCCCCEEEEEEecCCC------ceEEEEECCCCc---eEEccCCCCccCceeEcC
Confidence            87  67788764    2344578999999999987654322      679999999988   788887666666799999


Q ss_pred             CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEec
Q 006979          254 RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE  332 (623)
Q Consensus       254 DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~  332 (623)
                      ||++|+|.+ ++.+    ..+||++|++++.   ..++..+ .    .....+.|+|||+ ++|.... .+..+|+.+|+
T Consensus       300 DG~~i~f~s-~~~g----~~~Iy~~d~~g~~---~~~lt~~-~----~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~  365 (435)
T PRK05137        300 DGSQIVFES-DRSG----SPQLYVMNADGSN---PRRISFG-G----GRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKP  365 (435)
T ss_pred             CCCEEEEEE-CCCC----CCeEEEEECCCCC---eEEeecC-C----CcccCeEECCCCCEEEEEEcC-CCceEEEEEEC
Confidence            999999987 3332    4579999987662   3333332 2    3456799999999 7777765 56678999999


Q ss_pred             CCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe---EEEEEEeCCCCceeeccc
Q 006979          333 SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR---SYLGILDDFGHSLSLLDI  398 (623)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~---~~L~~~d~~~~~~~~lt~  398 (623)
                      +++..+.++.+ .....+.|++            ||+.|+++....+.   ..||++|++++..++|+.
T Consensus       366 ~~~~~~~lt~~-~~~~~p~~sp------------DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~  421 (435)
T PRK05137        366 DGSGERILTSG-FLVEGPTWAP------------NGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT  421 (435)
T ss_pred             CCCceEeccCC-CCCCCCeECC------------CCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence            88777666543 2445566665            89999998876665   689999999988887764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=1.2e-18  Score=185.99  Aligned_cols=251  Identities=11%  Similarity=0.075  Sum_probs=177.1

Q ss_pred             CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCC--CCcEEEEeCCCCC
Q 006979           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK--DQRLYKHSIDSKD  176 (623)
Q Consensus        99 ~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~--~~~l~~~d~~~g~  176 (623)
                      ..++.|+..+..+..++.||.++.++ +..+.++.....       .....|.++++.++|....  ..+||++++.+| 
T Consensus       163 ~~riayv~~~~~~~~~~~l~~~d~dg-~~~~~lt~~~~~-------~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G-  233 (429)
T PRK03629        163 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQP-------LMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-  233 (429)
T ss_pred             CCeEEEEEeeCCCCcceeEEEEcCCC-CCCEEeecCCCc-------eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-
Confidence            46777777654444567888888662 245555543200       0112344444478877543  346999999887 


Q ss_pred             CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCC
Q 006979          177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE  256 (623)
Q Consensus       177 ~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~  256 (623)
                       ..++|+..    ......+.|||||++|+|+......      .+||++|+++++   .++++.+......|.|||||+
T Consensus       234 -~~~~l~~~----~~~~~~~~~SPDG~~La~~~~~~g~------~~I~~~d~~tg~---~~~lt~~~~~~~~~~wSPDG~  299 (429)
T PRK03629        234 -AVRQVASF----PRHNGAPAFSPDGSKLAFALSKTGS------LNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQ  299 (429)
T ss_pred             -CeEEccCC----CCCcCCeEECCCCCEEEEEEcCCCC------cEEEEEECCCCC---EEEccCCCCCcCceEECCCCC
Confidence             77888764    2334578999999999998653322      469999999988   788887665667899999999


Q ss_pred             EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC
Q 006979          257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       257 ~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~  335 (623)
                      +|+|.+.+ .+    ..+||+++++++.   ..++ ....    .....+.|+|||+ ++|.... .+..+|+.+|++++
T Consensus       300 ~I~f~s~~-~g----~~~Iy~~d~~~g~---~~~l-t~~~----~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g  365 (429)
T PRK03629        300 NLAYTSDQ-AG----RPQVYKVNINGGA---PQRI-TWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATG  365 (429)
T ss_pred             EEEEEeCC-CC----CceEEEEECCCCC---eEEe-ecCC----CCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCC
Confidence            99999833 22    3479999998762   2333 3222    3445799999999 7777765 56778999999999


Q ss_pred             eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccC
Q 006979          336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP  399 (623)
Q Consensus       336 ~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~  399 (623)
                      +.+.|+.. .....+.|++            ||+.|++.+.+.+...|++++++++..++|+..
T Consensus       366 ~~~~Lt~~-~~~~~p~~Sp------------DG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~  416 (429)
T PRK03629        366 GVQVLTDT-FLDETPSIAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT  416 (429)
T ss_pred             CeEEeCCC-CCCCCceECC------------CCCEEEEEEcCCCceEEEEEECCCCCeEECccC
Confidence            88888743 2223566664            999999999888888899999998888888653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=2.2e-18  Score=184.81  Aligned_cols=252  Identities=12%  Similarity=0.114  Sum_probs=173.6

Q ss_pred             CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCC--cEEEEeCCCCC
Q 006979           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKD  176 (623)
Q Consensus        99 ~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~--~l~~~d~~~g~  176 (623)
                      ..++.|+..+..++-...|+..+.+ |...+.++.....+       ....|.++++.|+|+...++  +||++|+.++ 
T Consensus       182 ~~riayv~~~~~~~~~~~l~i~d~d-G~~~~~l~~~~~~~-------~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-  252 (448)
T PRK04792        182 LTRIAYVVVNDKDKYPYQLMIADYD-GYNEQMLLRSPEPL-------MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-  252 (448)
T ss_pred             cCEEEEEEeeCCCCCceEEEEEeCC-CCCceEeecCCCcc-------cCceECCCCCEEEEEEecCCCcEEEEEECCCC-
Confidence            3456666554433334567777655 22345555432110       11234444447888765443  5999999987 


Q ss_pred             CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCC
Q 006979          177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE  256 (623)
Q Consensus       177 ~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~  256 (623)
                       ..++++..    ......+.|||||++|+++.....      ..+||++|+++++   .++++........|.|||||+
T Consensus       253 -~~~~lt~~----~g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~---~~~lt~~~~~~~~p~wSpDG~  318 (448)
T PRK04792        253 -VREKVTSF----PGINGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKA---LTRITRHRAIDTEPSWHPDGK  318 (448)
T ss_pred             -CeEEecCC----CCCcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCC---eEECccCCCCccceEECCCCC
Confidence             67778764    223346899999999999765432      2689999999988   778877655567799999999


Q ss_pred             EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC
Q 006979          257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       257 ~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~  335 (623)
                      +|+|.+...     ...+||+++++++.   ..++....     .....+.|+|||+ ++|.... .+..+|+++|++++
T Consensus       319 ~I~f~s~~~-----g~~~Iy~~dl~~g~---~~~Lt~~g-----~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g  384 (448)
T PRK04792        319 SLIFTSERG-----GKPQIYRVNLASGK---VSRLTFEG-----EQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETG  384 (448)
T ss_pred             EEEEEECCC-----CCceEEEEECCCCC---EEEEecCC-----CCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCC
Confidence            999987332     24579999998762   23333222     2334689999999 7787765 67789999999999


Q ss_pred             eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC
Q 006979          336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF  400 (623)
Q Consensus       336 ~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~  400 (623)
                      +.+.++....+ ..|.|++            +++.|++++.++|...||+++.+++..+.++.+.
T Consensus       385 ~~~~lt~~~~d-~~ps~sp------------dG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~  436 (448)
T PRK04792        385 AMQVLTSTRLD-ESPSVAP------------NGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQ  436 (448)
T ss_pred             CeEEccCCCCC-CCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence            88877644222 2455654            8999999999899999999999888778787653

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.83  E-value=4.6e-19  Score=184.71  Aligned_cols=246  Identities=16%  Similarity=0.180  Sum_probs=176.4

Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~  244 (623)
                      +.+|++|+.++  ..++|+..    ......+.|||||++|+|++.          ++||+.++.++.   .++|+.+..
T Consensus        23 ~~y~i~d~~~~--~~~~l~~~----~~~~~~~~~sP~g~~~~~v~~----------~nly~~~~~~~~---~~~lT~dg~   83 (353)
T PF00930_consen   23 GDYYIYDIETG--EITPLTPP----PPKLQDAKWSPDGKYIAFVRD----------NNLYLRDLATGQ---ETQLTTDGE   83 (353)
T ss_dssp             EEEEEEETTTT--EEEESS-E----ETTBSEEEE-SSSTEEEEEET----------TEEEEESSTTSE---EEESES--T
T ss_pred             eeEEEEecCCC--ceEECcCC----ccccccceeecCCCeeEEEec----------CceEEEECCCCC---eEEeccccc
Confidence            45999999987  77888864    345667899999999999986          569999998887   778876431


Q ss_pred             ------------------cccceeeCCCCCEEEEEEecCCCC----------------------------CCCceEEEEE
Q 006979          245 ------------------FYAFPRMDPRGERMAWIEWHHPNM----------------------------PWDKAELWVG  278 (623)
Q Consensus       245 ------------------~~~~p~wSPDG~~la~~~~~~~~~----------------------------p~~~~~L~v~  278 (623)
                                        ......|||||++|||.+.|+..+                            ++...+|+++
T Consensus        84 ~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~  163 (353)
T PF00930_consen   84 PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVV  163 (353)
T ss_dssp             TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEE
T ss_pred             eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEE
Confidence                              112345999999999999776543                            2345677888


Q ss_pred             EecCCCceeeeEEEcC---CCCCccccCcCceeCCCCc-EEEEE-eCCCCeeeEEEEecCCCeEEEEeeccccccccccc
Q 006979          279 YISENGDVYKRVCVAG---FDPTIVESPTEPKWSSKGE-LFFVT-DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWV  353 (623)
Q Consensus       279 d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ws~DG~-l~~~~-~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~  353 (623)
                      +++++..   ..+...   ...+  .++..+.|++|++ +++.. ++.+....|..+|+.+++.+.+..+    ....|.
T Consensus       164 ~~~~~~~---~~~~~~~~~~~~~--~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e----~~~~Wv  234 (353)
T PF00930_consen  164 DLASGKT---TELDPPNSLNPQD--YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE----TSDGWV  234 (353)
T ss_dssp             ESSSTCC---CEE---HHHHTSS--EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE----ESSSSS
T ss_pred             ECCCCcE---EEeeeccccCCCc--cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe----cCCcce
Confidence            8876632   122211   1112  6788999999998 66554 5545567888999988887777644    445676


Q ss_pred             ccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEee---eecCCEEEEEEec-CCCCCeEEEE
Q 006979          354 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGAS-GVEPSSVAKV  429 (623)
Q Consensus       354 ~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~---~~~~~~~~~~~~s-~~~~~~ly~~  429 (623)
                      .......++  .++++.+++.++++|..|||+++.+++..++||.+.+.|..+   +.+++.+||++.. .....+||++
T Consensus       235 ~~~~~~~~~--~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v  312 (353)
T PF00930_consen  235 DVYDPPHFL--GPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV  312 (353)
T ss_dssp             SSSSEEEE---TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred             eeecccccc--cCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence            555555655  128889999999999999999999999999999998887544   7889999999874 4466799999


Q ss_pred             EcC-CCcceeee
Q 006979          430 TLD-DHKLKAVD  440 (623)
Q Consensus       430 ~l~-~~~~~~lt  440 (623)
                      +++ ++++++||
T Consensus       313 ~~~~~~~~~~LT  324 (353)
T PF00930_consen  313 SLDSGGEPKCLT  324 (353)
T ss_dssp             ETTETTEEEESS
T ss_pred             EeCCCCCeEecc
Confidence            999 88876665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=5.4e-18  Score=182.16  Aligned_cols=250  Identities=13%  Similarity=0.164  Sum_probs=176.0

Q ss_pred             CCcEEEEeec-CCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEe--CCEEEEEeCCC--CcEEEEeCC
Q 006979           99 HGRLIWLESR-PTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKD--QRLYKHSID  173 (623)
Q Consensus        99 ~~~~~~l~~~-~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s--~d~l~f~~~~~--~~l~~~d~~  173 (623)
                      ..++.|+... ..+++++.|+..+.+ |+..+.++.....         .....++  ++.|+|....+  .+||+++++
T Consensus       162 ~~~ia~v~~~~~~~~~~~~l~~~d~~-g~~~~~l~~~~~~---------~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~  231 (430)
T PRK00178        162 STRILYVTAERFSVNTRYTLQRSDYD-GARAVTLLQSREP---------ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD  231 (430)
T ss_pred             eeeEEEEEeeCCCCCcceEEEEECCC-CCCceEEecCCCc---------eeeeeECCCCCEEEEEEcCCCCCEEEEEECC
Confidence            4567777543 334467778887765 2344555433201         1233444  44788876554  369999999


Q ss_pred             CCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCC
Q 006979          174 SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP  253 (623)
Q Consensus       174 ~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSP  253 (623)
                      ++  ..++++..    ......+.|||||++|+|+......      .+||++|+++++   .++|+........|.|||
T Consensus       232 ~g--~~~~l~~~----~g~~~~~~~SpDG~~la~~~~~~g~------~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~sp  296 (430)
T PRK00178        232 TG--RREQITNF----EGLNGAPAWSPDGSKLAFVLSKDGN------PEIYVMDLASRQ---LSRVTNHPAIDTEPFWGK  296 (430)
T ss_pred             CC--CEEEccCC----CCCcCCeEECCCCCEEEEEEccCCC------ceEEEEECCCCC---eEEcccCCCCcCCeEECC
Confidence            87  67788764    2233468999999999987654322      679999999988   777877665667799999


Q ss_pred             CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEec
Q 006979          254 RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE  332 (623)
Q Consensus       254 DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~  332 (623)
                      ||++|+|.+ ++.+    ..+||+++++++.   ..++... .    .+...+.|+|||+ ++|.... .+..+|+.+|+
T Consensus       297 Dg~~i~f~s-~~~g----~~~iy~~d~~~g~---~~~lt~~-~----~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl  362 (430)
T PRK00178        297 DGRTLYFTS-DRGG----KPQIYKVNVNGGR---AERVTFV-G----NYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDL  362 (430)
T ss_pred             CCCEEEEEE-CCCC----CceEEEEECCCCC---EEEeecC-C----CCccceEECCCCCEEEEEEcc-CCceEEEEEEC
Confidence            999999987 4332    3579999987763   2333322 2    2345789999999 7787765 56678999999


Q ss_pred             CCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC
Q 006979          333 SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF  400 (623)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~  400 (623)
                      .+++.+.|+....+ ..+.|++            +|+.++++..+.|..+||.++.+++..++|+.+.
T Consensus       363 ~tg~~~~lt~~~~~-~~p~~sp------------dg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~  417 (430)
T PRK00178        363 QRGSVRILTDTSLD-ESPSVAP------------NGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQ  417 (430)
T ss_pred             CCCCEEEccCCCCC-CCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence            99988888754222 3456654            8999999999999999999999887777776543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=5.2e-18  Score=181.37  Aligned_cols=247  Identities=14%  Similarity=0.159  Sum_probs=172.9

Q ss_pred             CcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC--CEEEEEeCCC--CcEEEEeCCCC
Q 006979          100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG--DTVIFSNYKD--QRLYKHSIDSK  175 (623)
Q Consensus       100 ~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~--d~l~f~~~~~--~~l~~~d~~~g  175 (623)
                      +++.|+...   .++..||.++.+ |...+.++.....         ..+..+++  +.|+|....+  .+||++|+.++
T Consensus       164 ~~iayv~~~---~~~~~L~~~D~d-G~~~~~l~~~~~~---------v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g  230 (427)
T PRK02889        164 TRIAYVIKT---GNRYQLQISDAD-GQNAQSALSSPEP---------IISPAWSPDGTKLAYVSFESKKPVVYVHDLATG  230 (427)
T ss_pred             cEEEEEEcc---CCccEEEEECCC-CCCceEeccCCCC---------cccceEcCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            567777522   356778887765 2234444432211         22334444  4788876544  35999999987


Q ss_pred             CCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCC
Q 006979          176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG  255 (623)
Q Consensus       176 ~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG  255 (623)
                        ..++++..    ......+.|||||++|++.......      .+||.+|++++.   .++++........|.|||||
T Consensus       231 --~~~~l~~~----~g~~~~~~~SPDG~~la~~~~~~g~------~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG  295 (427)
T PRK02889        231 --RRRVVANF----KGSNSAPAWSPDGRTLAVALSRDGN------SQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDG  295 (427)
T ss_pred             --CEEEeecC----CCCccceEECCCCCEEEEEEccCCC------ceEEEEECCCCC---cEECCCCCCCCcCeEEcCCC
Confidence              67777753    2234568999999999987654322      679999999887   77887765556679999999


Q ss_pred             CEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCC
Q 006979          256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       256 ~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~  334 (623)
                      ++|+|++ ++.+    ..+||+++++++.   ..++... .    .+...+.|+|||+ ++|.++. .+..+|+.+|+.+
T Consensus       296 ~~l~f~s-~~~g----~~~Iy~~~~~~g~---~~~lt~~-g----~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~  361 (427)
T PRK02889        296 RSIYFTS-DRGG----APQIYRMPASGGA---AQRVTFT-G----SYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLAT  361 (427)
T ss_pred             CEEEEEe-cCCC----CcEEEEEECCCCc---eEEEecC-C----CCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCC
Confidence            9999986 4332    4579999987652   2333322 2    2345789999999 8887766 5667899999999


Q ss_pred             CeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCc
Q 006979          335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT  401 (623)
Q Consensus       335 ~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~  401 (623)
                      ++.+.++... ....+.|++            +++.|++...+.|...||.++.+++..+.++.+.+
T Consensus       362 g~~~~lt~~~-~~~~p~~sp------------dg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g  415 (427)
T PRK02889        362 GQVTALTDTT-RDESPSFAP------------NGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGG  415 (427)
T ss_pred             CCeEEccCCC-CccCceECC------------CCCEEEEEEecCCCEEEEEEECCCCceEEeecCCC
Confidence            8888887442 224566665            99999999999999999999998776767765433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=6e-18  Score=181.46  Aligned_cols=252  Identities=13%  Similarity=0.144  Sum_probs=175.4

Q ss_pred             CCcEEEEeecCC-CCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCC--CcEEEEeCCCC
Q 006979           99 HGRLIWLESRPT-EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK  175 (623)
Q Consensus        99 ~~~~~~l~~~~~-e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~--~~l~~~d~~~g  175 (623)
                      +.++.|+..... +..+..|+.++.+ |+..+.++.....+       ....|.++++.|+|.....  .+||+++++++
T Consensus       167 ~~~ia~v~~~~~~~~~~~~l~i~D~~-g~~~~~lt~~~~~v-------~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g  238 (433)
T PRK04922        167 WTRIAYVTVSGAGGAMRYALQVADSD-GYNPQTILRSAEPI-------LSPAWSPDGKKLAYVSFERGRSAIYVQDLATG  238 (433)
T ss_pred             cceEEEEEEeCCCCCceEEEEEECCC-CCCceEeecCCCcc-------ccccCCCCCCEEEEEecCCCCcEEEEEECCCC
Confidence            466778765432 2346678877765 33455555432110       1123444444788876544  35999999887


Q ss_pred             CCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCC
Q 006979          176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG  255 (623)
Q Consensus       176 ~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG  255 (623)
                        ..++++..    ......+.|||||++|+++....+.      .+||++|+++++   .++++........|+|||||
T Consensus       239 --~~~~l~~~----~g~~~~~~~SpDG~~l~~~~s~~g~------~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~spDG  303 (433)
T PRK04922        239 --QRELVASF----RGINGAPSFSPDGRRLALTLSRDGN------PEIYVMDLGSRQ---LTRLTNHFGIDTEPTWAPDG  303 (433)
T ss_pred             --CEEEeccC----CCCccCceECCCCCEEEEEEeCCCC------ceEEEEECCCCC---eEECccCCCCccceEECCCC
Confidence              67777754    2233468999999999987654322      579999999988   77787665555679999999


Q ss_pred             CEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCC
Q 006979          256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       256 ~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~  334 (623)
                      ++|+|.+ ++.+    ..+||+++++++.   ..++... .    .+...+.|+|||+ ++|.+.. .+..+|+.+|+.+
T Consensus       304 ~~l~f~s-d~~g----~~~iy~~dl~~g~---~~~lt~~-g----~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~  369 (433)
T PRK04922        304 KSIYFTS-DRGG----RPQIYRVAASGGS---AERLTFQ-G----NYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLST  369 (433)
T ss_pred             CEEEEEE-CCCC----CceEEEEECCCCC---eEEeecC-C----CCccCEEECCCCCEEEEEECC-CCceeEEEEECCC
Confidence            9999997 4332    3579999987762   2333322 2    2345799999999 7777665 5667999999999


Q ss_pred             CeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC
Q 006979          335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF  400 (623)
Q Consensus       335 ~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~  400 (623)
                      ++.+.|+... ....+.|++            |++.+++.++..+...||.++++++..++|+.+.
T Consensus       370 g~~~~Lt~~~-~~~~p~~sp------------dG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~  422 (433)
T PRK04922        370 GSVRTLTPGS-LDESPSFAP------------NGSMVLYATREGGRGVLAAVSTDGRVRQRLVSAD  422 (433)
T ss_pred             CCeEECCCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEEcccCC
Confidence            8888777542 223455654            8999999998888999999999988888887543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=3.9e-17  Score=174.82  Aligned_cols=236  Identities=14%  Similarity=0.148  Sum_probs=164.0

Q ss_pred             CEEEEEeCC-----CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          155 DTVIFSNYK-----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       155 d~l~f~~~~-----~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      .+|+|+...     +.+||++|.++.  ..+.|+..    ......+.|||||++|+|+..+..      ..+||++|+.
T Consensus       169 ~ria~v~~~~~~~~~~~i~i~d~dg~--~~~~lt~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~i~i~dl~  236 (429)
T PRK01742        169 TRIAYVVQKNGGSQPYEVRVADYDGF--NQFIVNRS----SQPLMSPAWSPDGSKLAYVSFENK------KSQLVVHDLR  236 (429)
T ss_pred             CEEEEEEEEcCCCceEEEEEECCCCC--CceEeccC----CCccccceEcCCCCEEEEEEecCC------CcEEEEEeCC
Confidence            467776433     246999999876  67778764    345678999999999999876432      2679999999


Q ss_pred             CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws  309 (623)
                      +++   .+.+.........|+|||||++|+|.....     ...+||++|++++    ..+.++...    .....+.|+
T Consensus       237 tg~---~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~~~----~~~~lt~~~----~~~~~~~wS  300 (429)
T PRK01742        237 SGA---RKVVASFRGHNGAPAFSPDGSRLAFASSKD-----GVLNIYVMGANGG----TPSQLTSGA----GNNTEPSWS  300 (429)
T ss_pred             CCc---eEEEecCCCccCceeECCCCCEEEEEEecC-----CcEEEEEEECCCC----CeEeeccCC----CCcCCEEEC
Confidence            887   556654444455799999999999986433     2457999998766    233344433    456789999


Q ss_pred             CCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       310 ~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      |||+ ++|.+++ .|..+||.++..++..+.+... .  ..+.|++            +++.|++...    ..++++|+
T Consensus       301 pDG~~i~f~s~~-~g~~~I~~~~~~~~~~~~l~~~-~--~~~~~Sp------------DG~~ia~~~~----~~i~~~Dl  360 (429)
T PRK01742        301 PDGQSILFTSDR-SGSPQVYRMSASGGGASLVGGR-G--YSAQISA------------DGKTLVMING----DNVVKQDL  360 (429)
T ss_pred             CCCCEEEEEECC-CCCceEEEEECCCCCeEEecCC-C--CCccCCC------------CCCEEEEEcC----CCEEEEEC
Confidence            9999 8888887 6788999999877766555322 1  2344554            8888887753    45788999


Q ss_pred             CCCceeecccCCcce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          389 FGHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       389 ~~~~~~~lt~~~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      .+++.+.++...... -.+++++..+++... ......++.++.+++..++|
T Consensus       361 ~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~-~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        361 TSGSTEVLSSTFLDESPSISPNGIMIIYSST-QGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             CCCCeEEecCCCCCCCceECCCCCEEEEEEc-CCCceEEEEEECCCCceEEc
Confidence            998888776542211 124788888877764 33344566777766655444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.79  E-value=5.6e-17  Score=173.87  Aligned_cols=240  Identities=18%  Similarity=0.204  Sum_probs=170.9

Q ss_pred             CEEEEEeCC----CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          155 DTVIFSNYK----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       155 d~l~f~~~~----~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      ++++|....    ...||++|.+++  ..++|+..    ......+.|||||++|+|+......      ..|+++|+.+
T Consensus       156 ~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~l~~~----~~~~~~p~~Spdg~~la~~~~~~~~------~~i~v~d~~~  223 (417)
T TIGR02800       156 TRIAYVSKSGKSRRYELQVADYDGA--NPQTITRS----REPILSPAWSPDGQKLAYVSFESGK------PEIYVQDLAT  223 (417)
T ss_pred             CEEEEEEEeCCCCcceEEEEcCCCC--CCEEeecC----CCceecccCCCCCCEEEEEEcCCCC------cEEEEEECCC
Confidence            456666533    235999998765  67888864    3345678899999999998754321      6799999998


Q ss_pred             CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979          231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (623)
Q Consensus       231 g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~  310 (623)
                      ++   .+.+.........++|||||++|+|.....     ...+||++++.++.    ...+....    .....+.|+|
T Consensus       224 g~---~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-----~~~~i~~~d~~~~~----~~~l~~~~----~~~~~~~~s~  287 (417)
T TIGR02800       224 GQ---REKVASFPGMNGAPAFSPDGSKLAVSLSKD-----GNPDIYVMDLDGKQ----LTRLTNGP----GIDTEPSWSP  287 (417)
T ss_pred             CC---EEEeecCCCCccceEECCCCCEEEEEECCC-----CCccEEEEECCCCC----EEECCCCC----CCCCCEEECC
Confidence            87   555654444455699999999999886332     24579999998762    22333322    2345789999


Q ss_pred             CCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC
Q 006979          311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (623)
Q Consensus       311 DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~  389 (623)
                      ||+ ++|.+++ .+..+||.+|+.+++.+.++........+.|++            +++.++++....+..+|+.+|++
T Consensus       288 dg~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp------------dg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       288 DGKSIAFTSDR-GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP------------DGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             CCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccCeEECC------------CCCEEEEEEccCCceEEEEEeCC
Confidence            999 8888877 677799999998888877775443444455554            88899998877778899999999


Q ss_pred             CCceeecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          390 GHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       390 ~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ++..+.++....... .++++++.+++....... ..+|.++.+++..
T Consensus       355 ~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~~g~~~  401 (417)
T TIGR02800       355 GGGERVLTDTGLDESPSFAPNGRMILYATTRGGR-GVLGLVSTDGRFR  401 (417)
T ss_pred             CCCeEEccCCCCCCCceECCCCCEEEEEEeCCCc-EEEEEEECCCcee
Confidence            988887775432222 347888888888765433 5788887666553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification

Probab=99.79  E-value=1.7e-19  Score=174.58  Aligned_cols=105  Identities=36%  Similarity=0.538  Sum_probs=95.3

Q ss_pred             cCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHH
Q 006979          512 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA  591 (623)
Q Consensus       512 ~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~  591 (623)
                      .|+...++|+++||+|+.+||||++++|.+|.+.+.++++..+++|+.+++++|++++.+|++||+|+|+|+||++++++
T Consensus         2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~   81 (213)
T PF00326_consen    2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA   81 (213)
T ss_dssp             --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred             eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-cCCCceeEEEecccCCCHHHhhhh
Q 006979          592 L-AFRDTFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       592 ~-~~~~~f~a~v~~~g~~d~~~~~~~  616 (623)
                      + .+|++|+|+|+.+|++|+..+...
T Consensus        82 ~~~~~~~f~a~v~~~g~~d~~~~~~~  107 (213)
T PF00326_consen   82 ATQHPDRFKAAVAGAGVSDLFSYYGT  107 (213)
T ss_dssp             HHHTCCGSSEEEEESE-SSTTCSBHH
T ss_pred             hcccceeeeeeeccceecchhccccc
Confidence            9 699999999999999998776544

; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.75  E-value=9.4e-16  Score=164.38  Aligned_cols=251  Identities=15%  Similarity=0.228  Sum_probs=172.3

Q ss_pred             CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCC--CcEEEEeCCCCC
Q 006979           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD  176 (623)
Q Consensus        99 ~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~--~~l~~~d~~~g~  176 (623)
                      +.+++|+..++ .+++..|+..+.. |+..+.++.....+       ....|.+++..++|.....  .+||++++.++ 
T Consensus       155 ~~~~~~~~~~~-~~~~~~l~~~d~~-g~~~~~l~~~~~~~-------~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-  224 (417)
T TIGR02800       155 STRIAYVSKSG-KSRRYELQVADYD-GANPQTITRSREPI-------LSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-  224 (417)
T ss_pred             CCEEEEEEEeC-CCCcceEEEEcCC-CCCCEEeecCCCce-------ecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-
Confidence            67788887665 3567778887765 33456665432110       0112333444788876544  46999999877 


Q ss_pred             CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCC
Q 006979          177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE  256 (623)
Q Consensus       177 ~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~  256 (623)
                       ..+.++..    ......+.|+|||+.|++.......      .+||.+|++++.   .++++........|.|||||+
T Consensus       225 -~~~~~~~~----~~~~~~~~~spDg~~l~~~~~~~~~------~~i~~~d~~~~~---~~~l~~~~~~~~~~~~s~dg~  290 (417)
T TIGR02800       225 -QREKVASF----PGMNGAPAFSPDGSKLAVSLSKDGN------PDIYVMDLDGKQ---LTRLTNGPGIDTEPSWSPDGK  290 (417)
T ss_pred             -CEEEeecC----CCCccceEECCCCCEEEEEECCCCC------ccEEEEECCCCC---EEECCCCCCCCCCEEECCCCC
Confidence             56666543    2233458899999999987653322      579999999887   677776555556799999999


Q ss_pred             EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC
Q 006979          257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       257 ~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~  335 (623)
                      +|+|... +.+    ..+||+++++++.   ..++... .    .....+.|+|||+ +++.... .+..+|+.+|+.++
T Consensus       291 ~l~~~s~-~~g----~~~iy~~d~~~~~---~~~l~~~-~----~~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~~  356 (417)
T TIGR02800       291 SIAFTSD-RGG----SPQIYMMDADGGE---VRRLTFR-G----GYNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDGG  356 (417)
T ss_pred             EEEEEEC-CCC----CceEEEEECCCCC---EEEeecC-C----CCccCeEECCCCCEEEEEEcc-CCceEEEEEeCCCC
Confidence            9999873 322    3479999988662   2333322 2    3456889999999 6666655 56778999999887


Q ss_pred             eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC
Q 006979          336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF  400 (623)
Q Consensus       336 ~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~  400 (623)
                      ..+.+.... ....+.|++            +++.|++.+.+++...|++++.+++..+.++.+.
T Consensus       357 ~~~~l~~~~-~~~~p~~sp------------dg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  408 (417)
T TIGR02800       357 GERVLTDTG-LDESPSFAP------------NGRMILYATTRGGRGVLGLVSTDGRFRARLPLGN  408 (417)
T ss_pred             CeEEccCCC-CCCCceECC------------CCCEEEEEEeCCCcEEEEEEECCCceeeECCCCC
Confidence            776665332 223445554            8999999999989899999998887777777653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.4e-15  Score=162.96  Aligned_cols=201  Identities=18%  Similarity=0.245  Sum_probs=150.8

Q ss_pred             CCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec
Q 006979          202 FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS  281 (623)
Q Consensus       202 G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~  281 (623)
                      +++|+|+.......   ...+|+++|.++..   .+.++.+.+.+..|.|||||++|+|++.+.     ...+||++|+.
T Consensus       168 ~~ria~v~~~~~~~---~~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~-----~~~~i~i~dl~  236 (429)
T PRK01742        168 RTRIAYVVQKNGGS---QPYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFEN-----KKSQLVVHDLR  236 (429)
T ss_pred             CCEEEEEEEEcCCC---ceEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecC-----CCcEEEEEeCC
Confidence            46899987643211   23789999999877   677887777788899999999999998653     24679999998


Q ss_pred             CCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCccee
Q 006979          282 ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYE  360 (623)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~  360 (623)
                      ++    ..+.+....    .....+.|+|||+ |++.... +|..+||.+|+++++.++++........+.|++      
T Consensus       237 tg----~~~~l~~~~----g~~~~~~wSPDG~~La~~~~~-~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp------  301 (429)
T PRK01742        237 SG----ARKVVASFR----GHNGAPAFSPDGSRLAFASSK-DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP------  301 (429)
T ss_pred             CC----ceEEEecCC----CccCceeECCCCCEEEEEEec-CCcEEEEEEECCCCCeEeeccCCCCcCCEEECC------
Confidence            76    233333333    3345799999999 7777665 678899999998888888887655566677765      


Q ss_pred             EEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979          361 IIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       361 ~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                            |++.|++++.++|..+||.++..++..+.++... ....++++++.+++...     ..++++|+.+++.+.++
T Consensus       302 ------DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt  369 (429)
T PRK01742        302 ------DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLS  369 (429)
T ss_pred             ------CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEec
Confidence                  8899999998889999999999888777764322 11234889998888754     46888999888765443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.71  E-value=1.1e-15  Score=160.52  Aligned_cols=230  Identities=15%  Similarity=0.188  Sum_probs=169.8

Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~  244 (623)
                      .+|++.|-++-  ..+.++..    ......+.|+|+++.++|+.-.....     .++|++++++++   ..++..-..
T Consensus       173 ~~l~~~D~dg~--~~~~l~~~----~~~~~~p~ws~~~~~~~y~~f~~~~~-----~~i~~~~l~~g~---~~~i~~~~g  238 (425)
T COG0823         173 YELALGDYDGY--NQQKLTDS----GSLILTPAWSPDGKKLAYVSFELGGC-----PRIYYLDLNTGK---RPVILNFNG  238 (425)
T ss_pred             ceEEEEccCCc--ceeEeccc----CcceeccccCcCCCceEEEEEecCCC-----ceEEEEeccCCc---cceeeccCC
Confidence            35888887743  56777765    44556799999999999986654321     579999999987   444444334


Q ss_pred             cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCC
Q 006979          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG  323 (623)
Q Consensus       245 ~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g  323 (623)
                      ....|+|||||++|+|.....     ...+||++|+.++.   .++ ++...    .....|.|+|||+ ++|.+++ .|
T Consensus       239 ~~~~P~fspDG~~l~f~~~rd-----g~~~iy~~dl~~~~---~~~-Lt~~~----gi~~~Ps~spdG~~ivf~Sdr-~G  304 (425)
T COG0823         239 NNGAPAFSPDGSKLAFSSSRD-----GSPDIYLMDLDGKN---LPR-LTNGF----GINTSPSWSPDGSKIVFTSDR-GG  304 (425)
T ss_pred             ccCCccCCCCCCEEEEEECCC-----CCccEEEEcCCCCc---cee-cccCC----ccccCccCCCCCCEEEEEeCC-CC
Confidence            456799999999999998443     36789999999873   233 44444    3445999999999 9999999 89


Q ss_pred             eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc-eeecccCCcc
Q 006979          324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTD  402 (623)
Q Consensus       324 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~-~~~lt~~~~~  402 (623)
                      .-+||+++++++..++++........|.|++            ||+++++.....|...+...|+.++. ++.++.....
T Consensus       305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp------------dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~  372 (425)
T COG0823         305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP------------DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLN  372 (425)
T ss_pred             CcceEEECCCCCceeEeeccCCCCcCccCCC------------CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccC
Confidence            9999999999999999986544444677775            99999998866677889999887766 7777765433


Q ss_pred             e-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          403 I-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       403 v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      - ..+.+++..+.+..... ..+.++.+++.+..
T Consensus       373 e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~g~~  405 (425)
T COG0823         373 ESPSWAPNGRMIMFSSGQG-GGSVLSLVSLDGRV  405 (425)
T ss_pred             CCCCcCCCCceEEEeccCC-CCceEEEeecccee
Confidence            2 22367788888877655 55677777765543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.68  E-value=4.2e-15  Score=154.95  Aligned_cols=249  Identities=16%  Similarity=0.182  Sum_probs=173.6

Q ss_pred             EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCC------C--------CeeecceeeCCCCCEEEEEEeccCCC
Q 006979          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE------P--------LVSYADGIFDPRFNRYVTVREDRRQD  215 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~------~--------~~~~~d~~~sPdG~~l~~v~~~~~~~  215 (623)
                      |+++++.++|+.  ++.||+.++.++  ..++||..+..      +        -.+...+.|||||++|+|.+.|...-
T Consensus        50 ~sP~g~~~~~v~--~~nly~~~~~~~--~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v  125 (353)
T PF00930_consen   50 WSPDGKYIAFVR--DNNLYLRDLATG--QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREV  125 (353)
T ss_dssp             E-SSSTEEEEEE--TTEEEEESSTTS--EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS
T ss_pred             eecCCCeeEEEe--cCceEEEECCCC--CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCC
Confidence            444444899985  466999999877  78899985311      0        11234577999999999998764320


Q ss_pred             ---------------------------CCCceeEEEEEEcCCCCcccceecc------cCCCcccceeeCCCCCEEEEEE
Q 006979          216 ---------------------------ALNSTTEIVAIALNGQNIQEPKVLV------SGSDFYAFPRMDPRGERMAWIE  262 (623)
Q Consensus       216 ---------------------------~~~~~~~L~~idl~~g~~~~~~~l~------~~~~~~~~p~wSPDG~~la~~~  262 (623)
                                                 ..++...|+++|+++++   ...+.      ..........|++|+++|++..
T Consensus       126 ~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~---~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~  202 (353)
T PF00930_consen  126 PEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK---TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW  202 (353)
T ss_dssp             -EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC---CCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred             ceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc---EEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence                                       12357789999999987   32322      1222345677999999888887


Q ss_pred             ecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC-CCCc-EEEEEeCCCCeeeEEEEecCCCeEEEE
Q 006979          263 WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI  340 (623)
Q Consensus       263 ~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws-~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l  340 (623)
                      .++.+   +...|.++|..++..   ..+.....+.|......+.+. +++. +++++.+ +|+.+||.++.+++..+.|
T Consensus       203 ~nR~q---~~~~l~~~d~~tg~~---~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~-~G~~hly~~~~~~~~~~~l  275 (353)
T PF00930_consen  203 LNRDQ---NRLDLVLCDASTGET---RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISER-DGYRHLYLYDLDGGKPRQL  275 (353)
T ss_dssp             EETTS---TEEEEEEEEECTTTC---EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEET-TSSEEEEEEETTSSEEEES
T ss_pred             cccCC---CEEEEEEEECCCCce---eEEEEecCCcceeeecccccccCCCCEEEEEEEc-CCCcEEEEEcccccceecc
Confidence            77764   678889999977632   233333333676666667775 7877 8888886 8999999999999999999


Q ss_pred             eecccccccc-cccccCcceeEEeecCCCCEEEEEEEE--CCeEEEEEEeCC-CCceeecccCCcce-E-eeeecCCEEE
Q 006979          341 YSLDAEFSRP-LWVFGINSYEIIQSHGEKNLIACSYRQ--NGRSYLGILDDF-GHSLSLLDIPFTDI-D-NITLGNDCLF  414 (623)
Q Consensus       341 ~~~~~~~~~~-~w~~~~~~~~~l~~s~~~~~l~~~~~~--~g~~~L~~~d~~-~~~~~~lt~~~~~v-~-~~~~~~~~~~  414 (623)
                      +.++.++... .|.            ++++.|||++..  .+..|||+++++ ++++++||...... . .++++++.++
T Consensus       276 T~G~~~V~~i~~~d------------~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v  343 (353)
T PF00930_consen  276 TSGDWEVTSILGWD------------EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV  343 (353)
T ss_dssp             S-SSS-EEEEEEEE------------CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred             ccCceeecccceEc------------CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence            9887776432 222            378899999986  458999999999 99999999876554 2 3489999999


Q ss_pred             EEEecCCCCC
Q 006979          415 VEGASGVEPS  424 (623)
Q Consensus       415 ~~~~s~~~~~  424 (623)
                      ...+++..|+
T Consensus       344 ~~~s~~~~P~  353 (353)
T PF00930_consen  344 DTYSGPDTPP  353 (353)
T ss_dssp             EEEESSSSCE
T ss_pred             EEEcCCCCCC
Confidence            9999888763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.68  E-value=6e-15  Score=154.87  Aligned_cols=206  Identities=16%  Similarity=0.287  Sum_probs=147.7

Q ss_pred             EEEeCCEEEEEeCCC---CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          150 FRIFGDTVIFSNYKD---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~---~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      |......+.|.....   .++|+++++++ ..++.++.     ......|+|||||++|+|+......      .+||++
T Consensus       200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g-~~~~i~~~-----~g~~~~P~fspDG~~l~f~~~rdg~------~~iy~~  267 (425)
T COG0823         200 WSPDGKKLAYVSFELGGCPRIYYLDLNTG-KRPVILNF-----NGNNGAPAFSPDGSKLAFSSSRDGS------PDIYLM  267 (425)
T ss_pred             cCcCCCceEEEEEecCCCceEEEEeccCC-ccceeecc-----CCccCCccCCCCCCEEEEEECCCCC------ccEEEE
Confidence            333333555543332   35999999987 34445553     3445679999999999998876533      789999


Q ss_pred             EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                      |++++.   .++|+.+......|.|||||++|+|++ ++.+    ..+||+++++++.   ..++.....     ....|
T Consensus       268 dl~~~~---~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G----~p~I~~~~~~g~~---~~riT~~~~-----~~~~p  331 (425)
T COG0823         268 DLDGKN---LPRLTNGFGINTSPSWSPDGSKIVFTS-DRGG----RPQIYLYDLEGSQ---VTRLTFSGG-----GNSNP  331 (425)
T ss_pred             cCCCCc---ceecccCCccccCccCCCCCCEEEEEe-CCCC----CcceEEECCCCCc---eeEeeccCC-----CCcCc
Confidence            999988   677888877777999999999999998 6654    4479999999873   344433332     33489


Q ss_pred             eeCCCCc-EEEEEeCCCCeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       307 ~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      .|+|||+ ++|.... .|.+.+...|+.++. .+.++ .......+.|.+            +++.+++.+...+...|+
T Consensus       332 ~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~------------ng~~i~~~s~~~~~~~l~  397 (425)
T COG0823         332 VWSPDGDKIVFESSS-GGQWDIDKNDLASGGKIRILT-STYLNESPSWAP------------NGRMIMFSSGQGGGSVLS  397 (425)
T ss_pred             cCCCCCCEEEEEecc-CCceeeEEeccCCCCcEEEcc-ccccCCCCCcCC------------CCceEEEeccCCCCceEE
Confidence            9999999 7777744 567889999988776 55554 333334566665            788888888777888999


Q ss_pred             EEeCCCCceeecc
Q 006979          385 ILDDFGHSLSLLD  397 (623)
Q Consensus       385 ~~d~~~~~~~~lt  397 (623)
                      .++.++...+.+.
T Consensus       398 ~~s~~g~~~~~~~  410 (425)
T COG0823         398 LVSLDGRVSRPLP  410 (425)
T ss_pred             EeeccceeEEEEe
Confidence            8888766554443

>PRK13604 luxD acyl transferase; Provisional

Probab=99.62  E-value=4.7e-15  Score=146.93  Aligned_cols=136  Identities=13%  Similarity=0.052  Sum_probs=106.5

Q ss_pred             EeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCC-CCCchhHH
Q 006979          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFR  543 (623)
Q Consensus       465 ~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs-~~~g~~~~  543 (623)
                      .+.+. +|..|.||+..|.+..     .++.|+||++||-...  ...+...+.+|+++||+|+.+|+||+ |.++.++.
T Consensus        13 ~~~~~-dG~~L~Gwl~~P~~~~-----~~~~~~vIi~HGf~~~--~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~   84 (307)
T PRK13604         13 VICLE-NGQSIRVWETLPKENS-----PKKNNTILIASGFARR--MDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTID   84 (307)
T ss_pred             eEEcC-CCCEEEEEEEcCcccC-----CCCCCEEEEeCCCCCC--hHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccc
Confidence            35566 8999999999997521     5677999999998432  23467789999999999999999876 66666654


Q ss_pred             HhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCHHHhhhh
Q 006979          544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       544 ~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~~~~~~~  616 (623)
                      +.... .   ..+|+.++++|+.+++   .++|+++||||||.+++.++..+ .++++|+.+|++++.++...
T Consensus        85 ~~t~s-~---g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~-~v~~lI~~sp~~~l~d~l~~  149 (307)
T PRK13604         85 EFTMS-I---GKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI-DLSFLITAVGVVNLRDTLER  149 (307)
T ss_pred             cCccc-c---cHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC-CCCEEEEcCCcccHHHHHHH
Confidence            32211 2   2699999999998873   47899999999999987777544 38999999999998877663

>PRK05077 frsA fermentation/respiration switch protein; Reviewed

Probab=99.57  E-value=2.5e-14  Score=151.40  Aligned_cols=134  Identities=17%  Similarity=0.093  Sum_probs=102.9

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+.++++.. +|..++++++.|+.       +++.|+||+.||. .+.....+...+++|+++||+|+.+|+||.|...
T Consensus       167 ~~e~v~i~~~-~g~~l~g~l~~P~~-------~~~~P~Vli~gG~-~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~  237 (414)
T PRK05077        167 ELKELEFPIP-GGGPITGFLHLPKG-------DGPFPTVLVCGGL-DSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSS  237 (414)
T ss_pred             ceEEEEEEcC-CCcEEEEEEEECCC-------CCCccEEEEeCCc-ccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence            4678999987 77789999999974       5678988866554 3322334556788999999999999999976542


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ..   .    ..........+++++|.+.+.+|++||+++|+|+||++++.++ .+|++++++|+..|+.+
T Consensus       238 ~~---~----~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~  301 (414)
T PRK05077        238 KW---K----LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH  301 (414)
T ss_pred             CC---C----ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence            21   0    0011122335789999999999999999999999999999988 67889999999999875

>TIGR01840 esterase_phb esterase, PHB depolymerase family

Probab=99.53  E-value=3.4e-14  Score=137.29  Aligned_cols=126  Identities=20%  Similarity=0.183  Sum_probs=94.2

Q ss_pred             EEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-CHHhHHHHcCceEEEEECCCCCCCCchhH--HHhhccCCccc
Q 006979          477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGSTGYGREF--RERLLGRWGIV  553 (623)
Q Consensus       477 ~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-~~~~~~~a~~G~~v~~~d~rGs~~~g~~~--~~~~~~~~g~~  553 (623)
                      +++|.|++.      ++++|+||++||++........ ....++..+.||+|+.||++|.++.+..|  ........+..
T Consensus         1 ~~ly~P~~~------~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~   74 (212)
T TIGR01840         1 MYVYVPAGL------TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTG   74 (212)
T ss_pred             CEEEcCCCC------CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCc
Confidence            378889762      4678999999999654332211 12344555689999999999976543322  11111223445


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       554 ~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +..|+...++++.++..+|++||+|+|+|+||++++.++ .+|++|+++++++|..
T Consensus        75 ~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~  130 (212)
T TIGR01840        75 EVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLP  130 (212)
T ss_pred             cHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence            788999999999998889999999999999999999998 8999999999998863

This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.

>TIGR00976 /NonD putative hydrolase, CocE/NonD family

Probab=99.51  E-value=1.1e-13  Score=152.79  Aligned_cols=132  Identities=18%  Similarity=0.174  Sum_probs=106.5

Q ss_pred             ecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc--cCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHH
Q 006979          467 PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE  544 (623)
Q Consensus       467 ~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~--~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~  544 (623)
                      +.. ||.+|++.+|.|++       .++.|+||++||......  ........++|+++||+|+.+|+||.|+++..+. 
T Consensus         2 ~~~-DG~~L~~~~~~P~~-------~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~-   72 (550)
T TIGR00976         2 PMR-DGTRLAIDVYRPAG-------GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD-   72 (550)
T ss_pred             cCC-CCCEEEEEEEecCC-------CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE-
Confidence            455 89999999999976       457899999998743211  0111235678999999999999999887765432 


Q ss_pred             hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979          545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       545 ~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                          .++..+.+|+.++++|+.++++.| .||+++|+||||++++.++ .+|+.++|+|+..+..|+..
T Consensus        73 ----~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~  136 (550)
T TIGR00976        73 ----LLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYR  136 (550)
T ss_pred             ----ecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhH
Confidence                122567899999999999998887 6999999999999999998 77889999999999999765

This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.50  E-value=2.1e-11  Score=130.49  Aligned_cols=311  Identities=14%  Similarity=0.141  Sum_probs=185.7

Q ss_pred             CCcEEEEeecCCCCCceEEEEcCCCC-CCCC-cccCC-CCCccceeeeecCCceEEEeCC--EEEEEeCCCC----cEEE
Q 006979           99 HGRLIWLESRPTEAGRGVLVKEPAKA-GDEP-SDITP-KEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ----RLYK  169 (623)
Q Consensus        99 ~~~~~~l~~~~~e~g~~~l~~~~~~~-gg~~-~~l~p-~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~----~l~~  169 (623)
                      |+..||....+. +....++|....+ ++.. +.+++ ........  -..++.+.+++|  .++|.-...|    .|++
T Consensus        78 g~~~y~~~~~~~-~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~--~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v  154 (414)
T PF02897_consen   78 GGYYYYSRNQGG-KNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGG--YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRV  154 (414)
T ss_dssp             TTEEEEEEE-SS--SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS---EEEEEEEETTTSSEEEEEEEETTSSEEEEEE
T ss_pred             CCeEEEEEEcCC-CceEEEEEEecccCCCCceEEEEcchHhhccCc--eEEeeeeeECCCCCEEEEEecCCCCceEEEEE
Confidence            888888876654 4566677776541 1233 44543 22211110  111345666655  6777744433    3999


Q ss_pred             EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC--CCCceeEEEEEEcCCCCcccceecccC--CCc
Q 006979          170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD--ALNSTTEIVAIALNGQNIQEPKVLVSG--SDF  245 (623)
Q Consensus       170 ~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~--~~~~~~~L~~idl~~g~~~~~~~l~~~--~~~  245 (623)
                      +|+++|  .  .+...  -....+..+.|++||+.++|++.+....  ......++|++.+.++..+. +.+..+  ..+
T Consensus       155 ~Dl~tg--~--~l~d~--i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~  227 (414)
T PF02897_consen  155 FDLETG--K--FLPDG--IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPF  227 (414)
T ss_dssp             EETTTT--E--EEEEE--EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTT
T ss_pred             EECCCC--c--CcCCc--ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCc
Confidence            999876  2  22211  0012233388999999999998766432  11124889999998875322 244433  334


Q ss_pred             -ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC--CceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979          246 -YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN--GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (623)
Q Consensus       246 -~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~  322 (623)
                       .....+|+||++|+.......    ..+++|++++..+  .....+.+....+    .....+... ++.+|+.++...
T Consensus       228 ~~~~~~~s~d~~~l~i~~~~~~----~~s~v~~~d~~~~~~~~~~~~~l~~~~~----~~~~~v~~~-~~~~yi~Tn~~a  298 (414)
T PF02897_consen  228 WFVSVSRSKDGRYLFISSSSGT----SESEVYLLDLDDGGSPDAKPKLLSPRED----GVEYYVDHH-GDRLYILTNDDA  298 (414)
T ss_dssp             SEEEEEE-TTSSEEEEEEESSS----SEEEEEEEECCCTTTSS-SEEEEEESSS----S-EEEEEEE-TTEEEEEE-TT-
T ss_pred             EEEEEEecCcccEEEEEEEccc----cCCeEEEEeccccCCCcCCcEEEeCCCC----ceEEEEEcc-CCEEEEeeCCCC
Confidence             556789999999887664442    2488999999874  1112344444333    111222222 444888888756


Q ss_pred             CeeeEEEEecCCCe---EE-EEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC-CCceeecc
Q 006979          323 GFWNLHKWIESNNE---VL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLSLLD  397 (623)
Q Consensus       323 g~~~L~~~d~~~~~---~~-~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~-~~~~~~lt  397 (623)
                      ...+|+++++....   .+ .|.++.....-       ..+..     .+++|++...+++..+|.++++. +.....+.
T Consensus       299 ~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l-------~~~~~-----~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~  366 (414)
T PF02897_consen  299 PNGRLVAVDLADPSPAEWWTVLIPEDEDVSL-------EDVSL-----FKDYLVLSYRENGSSRLRVYDLDDGKESREIP  366 (414)
T ss_dssp             TT-EEEEEETTSTSGGGEEEEEE--SSSEEE-------EEEEE-----ETTEEEEEEEETTEEEEEEEETT-TEEEEEEE
T ss_pred             CCcEEEEecccccccccceeEEcCCCCceeE-------EEEEE-----ECCEEEEEEEECCccEEEEEECCCCcEEeeec
Confidence            67899999987764   34 44443222111       12222     56889999999999999999999 66666666


Q ss_pred             cCCc-ceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979          398 IPFT-DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       398 ~~~~-~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                      .+.. .+..+  ..+++.++|..++...|+.+|.+|+++++.+.++
T Consensus       367 ~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  367 LPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             SSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred             CCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence            6533 34444  5678999999999999999999999999976654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins

Probab=99.50  E-value=8.4e-14  Score=141.39  Aligned_cols=146  Identities=26%  Similarity=0.340  Sum_probs=104.0

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ....|.|.+. +|..|++|++.|++.      .+++|+||.+||....  ...+ .....|+.+||+|+.+|.||.++..
T Consensus        55 ~vy~v~f~s~-~g~~V~g~l~~P~~~------~~~~Pavv~~hGyg~~--~~~~-~~~~~~a~~G~~vl~~d~rGqg~~~  124 (320)
T PF05448_consen   55 EVYDVSFESF-DGSRVYGWLYRPKNA------KGKLPAVVQFHGYGGR--SGDP-FDLLPWAAAGYAVLAMDVRGQGGRS  124 (320)
T ss_dssp             EEEEEEEEEG-GGEEEEEEEEEES-S------SSSEEEEEEE--TT----GGGH-HHHHHHHHTT-EEEEE--TTTSSSS
T ss_pred             EEEEEEEEcc-CCCEEEEEEEecCCC------CCCcCEEEEecCCCCC--CCCc-ccccccccCCeEEEEecCCCCCCCC
Confidence            5568899987 899999999999852      6789999999998433  1111 2234589999999999999988533


Q ss_pred             hhHHHhh----c-----------c-CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEe
Q 006979          540 REFRERL----L-----------G-RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS  603 (623)
Q Consensus       540 ~~~~~~~----~-----------~-~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~  603 (623)
                      .+.....    .           + .+....+.|+..++++|.+++.+|++||+++|.|.||.++++++...++++++++
T Consensus       125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~rv~~~~~  204 (320)
T PF05448_consen  125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPRVKAAAA  204 (320)
T ss_dssp             -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST-SEEEE
T ss_pred             CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCccccEEEe
Confidence            3221100    0           0 0111236899999999999999999999999999999999999965567999999


Q ss_pred             ccc-CCCHHHhhh
Q 006979          604 LYG-VSIPVIISE  615 (623)
Q Consensus       604 ~~g-~~d~~~~~~  615 (623)
                      .+| ++|+...++
T Consensus       205 ~vP~l~d~~~~~~  217 (320)
T PF05448_consen  205 DVPFLCDFRRALE  217 (320)
T ss_dssp             ESESSSSHHHHHH
T ss_pred             cCCCccchhhhhh
Confidence            988 589887654

Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....

>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []

Probab=99.48  E-value=5.9e-14  Score=141.03  Aligned_cols=129  Identities=20%  Similarity=0.203  Sum_probs=98.0

Q ss_pred             CCeEEEEEEEcC--CCCCCCCCCCCCCCEEEEecCCCCCccc--C--cCC----HHhHHHHcCceEEEEECCCCCCCCch
Q 006979          471 PGQKAYAYYYPP--SNPIYQASPEEKPPLLVKSHGGPTSEAR--G--ILN----LSIQYWTSRGWAFVDVNYGGSTGYGR  540 (623)
Q Consensus       471 dg~~i~~~l~~P--~~~~~~~~~~~~~Pliv~~hGg~~~~~~--~--~~~----~~~~~~a~~G~~v~~~d~rGs~~~g~  540 (623)
                      ||.+|.+.+|.|  ..       +++.|+||..|+.......  .  ...    .....|+++||+|+.+|.||.++++.
T Consensus         1 DGv~L~adv~~P~~~~-------~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G   73 (272)
T PF02129_consen    1 DGVRLAADVYRPGADG-------GGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEG   73 (272)
T ss_dssp             TS-EEEEEEEEE--TT-------SSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S
T ss_pred             CCCEEEEEEEecCCCC-------CCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCC
Confidence            688999999999  33       7899999999987422100  0  111    11234999999999999999998887


Q ss_pred             hHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979          541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       541 ~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                      .+...     ...+.+|..++|+|+.+|++.| .|||++|.||+|++.+.++ ..|..+||+++..+..|+.+
T Consensus        74 ~~~~~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~  140 (272)
T PF02129_consen   74 EFDPM-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYR  140 (272)
T ss_dssp             -B-TT-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCC
T ss_pred             ccccC-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccc
Confidence            76532     6678999999999999998876 6999999999999999999 68889999999999998755

It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....

>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.48  E-value=7.2e-14  Score=131.30  Aligned_cols=144  Identities=22%  Similarity=0.219  Sum_probs=110.9

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      +.-.++|++. +|..|++|+..|+..      .+++|+||..||..++..   +-...-.|+..||+|+..|.||.+++.
T Consensus        55 e~ydvTf~g~-~g~rI~gwlvlP~~~------~~~~P~vV~fhGY~g~~g---~~~~~l~wa~~Gyavf~MdvRGQg~~~  124 (321)
T COG3458          55 EVYDVTFTGY-GGARIKGWLVLPRHE------KGKLPAVVQFHGYGGRGG---EWHDMLHWAVAGYAVFVMDVRGQGSSS  124 (321)
T ss_pred             EEEEEEEecc-CCceEEEEEEeeccc------CCccceEEEEeeccCCCC---CccccccccccceeEEEEecccCCCcc
Confidence            4457888887 999999999999872      488999999999843332   112334589999999999999987763


Q ss_pred             hhHHHh----------hc-------cCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEE
Q 006979          540 REFRER----------LL-------GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGA  602 (623)
Q Consensus       540 ~~~~~~----------~~-------~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v  602 (623)
                      .+-...          .+       ..+-...+.|...+++-+.+...+|++||++.|+|.||.++++++....++++++
T Consensus       125 ~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~rik~~~  204 (321)
T COG3458         125 QDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKAVV  204 (321)
T ss_pred             ccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcChhhhccc
Confidence            310000          00       0112234789999999999999999999999999999999999998778999999


Q ss_pred             ecccC-CCHHHh
Q 006979          603 SLYGV-SIPVII  613 (623)
Q Consensus       603 ~~~g~-~d~~~~  613 (623)
                      +.+|. +|..+.
T Consensus       205 ~~~Pfl~df~r~  216 (321)
T COG3458         205 ADYPFLSDFPRA  216 (321)
T ss_pred             ccccccccchhh
Confidence            99996 666544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=2.1e-11  Score=122.48  Aligned_cols=253  Identities=13%  Similarity=0.108  Sum_probs=149.9

Q ss_pred             HHhccCCcc-CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEE
Q 006979           83 VVSGASKRL-GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS  160 (623)
Q Consensus        83 ~~~~~~~~~-~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~  160 (623)
                      .+......+ +++.|.+ .+.|||+++...+     ++++++.+|.......|..++          .....+.+..++.
T Consensus        18 ~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~-----i~r~~~~~g~~~~~~~p~~~~----------~~~~~d~~g~Lv~   82 (307)
T COG3386          18 TLLDKGATLGEGPVWDPDRGALLWVDILGGR-----IHRLDPETGKKRVFPSPGGFS----------SGALIDAGGRLIA   82 (307)
T ss_pred             eEeecccccccCccCcCCCCEEEEEeCCCCe-----EEEecCCcCceEEEECCCCcc----------cceeecCCCeEEE
Confidence            344444555 6779999 8889999999653     889887655333444454421          1112233344454


Q ss_pred             eCCCCcEEEEeCCCCCCCc-eecCCC-CCCCCeeecceeeCCCCCEEEEEEec--cCCCCCCceeEEEEEEcCCCCcccc
Q 006979          161 NYKDQRLYKHSIDSKDSSP-LPITPD-YGEPLVSYADGIFDPRFNRYVTVRED--RRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       161 ~~~~~~l~~~d~~~g~~~~-~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~--~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      ...  .+++++++.+  .. +.++.. .+.+..|.+|...+|+|+.++-.+..  ...........||++|+.++.   +
T Consensus        83 ~~~--g~~~~~~~~~--~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~---~  155 (307)
T COG3386          83 CEH--GVRLLDPDTG--GKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV---V  155 (307)
T ss_pred             Ecc--ccEEEeccCC--ceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE---E
Confidence            322  3777777655  34 555554 34556899999999999877665551  001112244689999986664   4


Q ss_pred             eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC-CCceeee--EEEcCCCCCccccCcCceeCCCCc
Q 006979          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKR--VCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       237 ~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      +.+...-.+.++.+|||||+.|+++...       ..+||.++++. .+.+..+  .+..... .  +.+...+-..||.
T Consensus       156 ~l~~~~~~~~NGla~SpDg~tly~aDT~-------~~~i~r~~~d~~~g~~~~~~~~~~~~~~-~--G~PDG~~vDadG~  225 (307)
T COG3386         156 RLLDDDLTIPNGLAFSPDGKTLYVADTP-------ANRIHRYDLDPATGPIGGRRGFVDFDEE-P--GLPDGMAVDADGN  225 (307)
T ss_pred             EeecCcEEecCceEECCCCCEEEEEeCC-------CCeEEEEecCcccCccCCcceEEEccCC-C--CCCCceEEeCCCC
Confidence            4444446677889999999998888532       45699998873 2222222  2233222 1  5666777778885


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~  380 (623)
                      ++..+..  +.+.|.++++++.....+.-.......+.         |-  .++.+.||+++.+.+.
T Consensus       226 lw~~a~~--~g~~v~~~~pdG~l~~~i~lP~~~~t~~~---------Fg--G~~~~~L~iTs~~~~~  279 (307)
T COG3386         226 LWVAAVW--GGGRVVRFNPDGKLLGEIKLPVKRPTNPA---------FG--GPDLNTLYITSARSGM  279 (307)
T ss_pred             EEEeccc--CCceEEEECCCCcEEEEEECCCCCCccce---------Ee--CCCcCEEEEEecCCCC
Confidence            5443333  44689999998554444431111111111         11  0156788888876543

>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.44  E-value=6e-13  Score=129.58  Aligned_cols=135  Identities=18%  Similarity=0.145  Sum_probs=104.9

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~  541 (623)
                      +.+.++.+  +.++.+++..|+.       ....|.||++|+-  ....+.....++.|+++||.|++||+.+..+-...
T Consensus         3 ~~v~~~~~--~~~~~~~~a~P~~-------~~~~P~VIv~hei--~Gl~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~   71 (236)
T COG0412           3 TDVTIPAP--DGELPAYLARPAG-------AGGFPGVIVLHEI--FGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTD   71 (236)
T ss_pred             cceEeeCC--CceEeEEEecCCc-------CCCCCEEEEEecc--cCCchHHHHHHHHHHhCCcEEEechhhccCCCCCc
Confidence            45777775  4889999999987       4445999999987  33445667789999999999999998763332111


Q ss_pred             ------HHHhh---ccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCC
Q 006979          542 ------FRERL---LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVS  608 (623)
Q Consensus       542 ------~~~~~---~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~  608 (623)
                            .....   ...+ .....|+.++++||..++.+|++||+++|+|+||.+++.++.+...++|+|++||-.
T Consensus        72 ~~~~~~~~~~~~~~~~~~-~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~v~a~v~fyg~~  146 (236)
T COG0412          72 IEDEPAELETGLVERVDP-AEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVKAAVAFYGGL  146 (236)
T ss_pred             ccccHHHHhhhhhccCCH-HHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCCccEEEEecCCC
Confidence                  11110   1112 455789999999999999899999999999999999999996554899999999953

>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated

Probab=99.43  E-value=8.7e-13  Score=130.21  Aligned_cols=138  Identities=14%  Similarity=0.211  Sum_probs=100.9

Q ss_pred             EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc--cCcCCHHhHHHHcCceEEEEECCCCCCCCch
Q 006979          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGR  540 (623)
Q Consensus       463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~--~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~  540 (623)
                      .+.++.. .| .+.++++.|..       .++.|+||++||......  ...+...+..|+++||.|+.+|+||.|....
T Consensus         2 ~~~l~~~-~g-~~~~~~~~p~~-------~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g   72 (266)
T TIGR03101         2 PFFLDAP-HG-FRFCLYHPPVA-------VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAG   72 (266)
T ss_pred             CEEecCC-CC-cEEEEEecCCC-------CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Confidence            3556664 44 47788888865       345689999999743211  1233456788999999999999999765533


Q ss_pred             hHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhhh
Q 006979          541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       541 ~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~~  616 (623)
                      .+..   ..+. ...+|+.++++++.+++   .++|.++|+|+||.+++.++ .+|+.++++|...|+.+-..+..+
T Consensus        73 ~~~~---~~~~-~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~  142 (266)
T TIGR03101        73 DFAA---ARWD-VWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQ  142 (266)
T ss_pred             cccc---CCHH-HHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHH
Confidence            2211   1121 23689999999998774   46899999999999999888 789999999999999886665544

This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.

>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A

Probab=99.43  E-value=5.4e-13  Score=133.79  Aligned_cols=144  Identities=22%  Similarity=0.210  Sum_probs=91.1

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc--------C----c----CCHHhHHHHcC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR--------G----I----LNLSIQYWTSR  523 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~--------~----~----~~~~~~~~a~~  523 (623)
                      +.|.+.|... ++..++++++.|++.      .++.|.||.+||.......        .    .    -.....+|+++
T Consensus        87 ~~EKv~f~~~-p~~~vpaylLvPd~~------~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~  159 (390)
T PF12715_consen   87 TREKVEFNTT-PGSRVPAYLLVPDGA------KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR  159 (390)
T ss_dssp             EEEEEEE--S-TTB-EEEEEEEETT--------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred             EEEEEEEEcc-CCeeEEEEEEecCCC------CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence            6678888887 889999999999873      4778999999986322110        0    0    12357789999


Q ss_pred             ceEEEEECCCCCCCCch----------hHHHh------hccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHH
Q 006979          524 GWAFVDVNYGGSTGYGR----------EFRER------LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT  587 (623)
Q Consensus       524 G~~v~~~d~rGs~~~g~----------~~~~~------~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~  587 (623)
                      ||+|+++|.+|-|+.+.          ++...      +-..+.....-|.+.+++||..++.||++||+++|+|+||+.
T Consensus       160 GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~  239 (390)
T PF12715_consen  160 GYVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYR  239 (390)
T ss_dssp             TSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred             CCEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence            99999999998665332          01100      111222333456667999999999999999999999999999


Q ss_pred             HHHHhcCCCceeEEEecccCCCH
Q 006979          588 TLAALAFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       588 ~~~~~~~~~~f~a~v~~~g~~d~  610 (623)
                      +++++...++++|+|...=++-.
T Consensus       240 a~~LaALDdRIka~v~~~~l~~~  262 (390)
T PF12715_consen  240 AWWLAALDDRIKATVANGYLCTT  262 (390)
T ss_dssp             HHHHHHH-TT--EEEEES-B--H
T ss_pred             HHHHHHcchhhHhHhhhhhhhcc
Confidence            99999877888888876555544

>PLN02298 hydrolase, alpha/beta fold family protein

Probab=99.42  E-value=1.4e-12  Score=135.11  Aligned_cols=139  Identities=16%  Similarity=0.123  Sum_probs=102.4

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      +++...+... +|..+++..+.|.+.      +.+.|+||++||..... ...+...+..|+++||.|+.+|+||.|.+.
T Consensus        31 ~~~~~~~~~~-dg~~l~~~~~~~~~~------~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~  102 (330)
T PLN02298         31 KGSKSFFTSP-RGLSLFTRSWLPSSS------SPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGHGRSE  102 (330)
T ss_pred             ccccceEEcC-CCCEEEEEEEecCCC------CCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCCCCCC
Confidence            4455667777 899999888877541      24568999999984322 224455677899999999999999976543


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ..   ......-....+|+.+++++|......+..+++|+||||||.+++.++ .+|++++++|+.+|..+
T Consensus       103 ~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~  170 (330)
T PLN02298        103 GL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCK  170 (330)
T ss_pred             Cc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEeccccc
Confidence            21   000001122468999999999876545556899999999999999888 88999999999988754

>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []

Probab=99.41  E-value=5.2e-13  Score=136.41  Aligned_cols=134  Identities=23%  Similarity=0.225  Sum_probs=93.6

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+.++++-.  |..|.++++.|..       +++.|+||++-|- .+-....+.....+|+.+|++++.+|.+|.|...
T Consensus       164 ~i~~v~iP~e--g~~I~g~LhlP~~-------~~p~P~VIv~gGl-Ds~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~  233 (411)
T PF06500_consen  164 PIEEVEIPFE--GKTIPGYLHLPSG-------EKPYPTVIVCGGL-DSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESP  233 (411)
T ss_dssp             EEEEEEEEET--TCEEEEEEEESSS-------SS-EEEEEEE--T-TS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGT
T ss_pred             CcEEEEEeeC--CcEEEEEEEcCCC-------CCCCCEEEEeCCc-chhHHHHHHHHHHHHHhCCCEEEEEccCCCcccc
Confidence            4678888875  6899999999986       7888998877544 2222223334556789999999999999976432


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC-CCH
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV-SIP  610 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~-~d~  610 (623)
                      + +  .+..+.    -.=..++++||.+.++||.+||+++|.|+|||.+..++ .++++++|+|+..|+ .++
T Consensus       234 ~-~--~l~~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~  299 (411)
T PF06500_consen  234 K-W--PLTQDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHF  299 (411)
T ss_dssp             T-T---S-S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCG
T ss_pred             c-C--CCCcCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhh
Confidence            1 1  111111    12355889999999999999999999999999999998 788899999999886 444

This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.

>PRK10566 esterase; Provisional

Probab=99.40  E-value=1.6e-12  Score=128.92  Aligned_cols=124  Identities=19%  Similarity=0.192  Sum_probs=86.3

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC-chhHHHhhccCCc--
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY-GREFRERLLGRWG--  551 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~-g~~~~~~~~~~~g--  551 (623)
                      +..+.+.|.+.     .+++.|+||++||.+...  ..+...++.|+++||.|+++|+||.|.. +..........|.  
T Consensus        12 ~~~~~~~p~~~-----~~~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~   84 (249)
T PRK10566         12 IEVLHAFPAGQ-----RDTPLPTVFFYHGFTSSK--LVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQIL   84 (249)
T ss_pred             cceEEEcCCCC-----CCCCCCEEEEeCCCCccc--chHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHH
Confidence            34455667541     135679999999985433  3566789999999999999999996532 1110011111111  


Q ss_pred             cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          552 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       552 ~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                      ....+|+.++++++.+++.+|++||+++|+|+||++++.++ .+|+ +++++...+
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~-~~~~~~~~~  139 (249)
T PRK10566         85 LQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPW-VKCVASLMG  139 (249)
T ss_pred             HHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCC-eeEEEEeeC
Confidence            13467888999999999889999999999999999999998 6665 445444433

>PF10503 Esterase_phd: Esterase PHB depolymerase

Probab=99.37  E-value=2.1e-12  Score=123.05  Aligned_cols=126  Identities=21%  Similarity=0.176  Sum_probs=89.5

Q ss_pred             EEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHH-cCceEEEEECCCCCCCCchhH--HHhhccCCcc
Q 006979          476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT-SRGWAFVDVNYGGSTGYGREF--RERLLGRWGI  552 (623)
Q Consensus       476 ~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a-~~G~~v~~~d~rGs~~~g~~~--~~~~~~~~g~  552 (623)
                      ...+|.|++..     ..+.|+||.+||.........-......++ ++||+|+.|+-.........|  .. .....+.
T Consensus         2 ~Y~lYvP~~~~-----~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~   75 (220)
T PF10503_consen    2 SYRLYVPPGAP-----RGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGG   75 (220)
T ss_pred             cEEEecCCCCC-----CCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCc
Confidence            45788887621     347899999999954332111111223455 479999999854322222222  22 2233455


Q ss_pred             chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       553 ~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      .+...+.+.++++.++..||++||.+.|+|.||+|+..++ .+||+|+|+..++|+
T Consensus        76 ~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~  131 (220)
T PF10503_consen   76 GDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGV  131 (220)
T ss_pred             cchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccc
Confidence            6777888999999999999999999999999999999999 899999999998886

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.35  E-value=6.1e-11  Score=118.72  Aligned_cols=241  Identities=19%  Similarity=0.181  Sum_probs=156.3

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      +|.|+|+...+  ||.+++.+|  ++++||..    -.-.+.+.++|||++++|.+--....  ....+||+++.++|+ 
T Consensus        50 GD~IiFt~~Dd--lWe~slk~g--~~~ritS~----lGVvnn~kf~pdGrkvaf~rv~~~ss--~~taDly~v~~e~Ge-  118 (668)
T COG4946          50 GDRIIFTCCDD--LWEYSLKDG--KPLRITSG----LGVVNNPKFSPDGRKVAFSRVMLGSS--LQTADLYVVPSEDGE-  118 (668)
T ss_pred             CcEEEEEechH--HHHhhhccC--CeeEEecc----cceeccccCCCCCcEEEEEEEEecCC--CccccEEEEeCCCCc-
Confidence            46899986544  999999988  89999986    45678899999999999965422111  123789999999998 


Q ss_pred             ccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          234 QEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       234 ~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                        +++++- +..|..-.-|+|||+-|+......|-..  -.+||.+..++..   ...+-.+..       ... --.||
T Consensus       119 --~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q--~~~lYkv~~dg~~---~e~LnlGpa-------thi-v~~dg  183 (668)
T COG4946         119 --AKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQ--WTELYKVNVDGIK---TEPLNLGPA-------THI-VIKDG  183 (668)
T ss_pred             --EEEEEEeccccceeeccCCCCCEEEEeccCCCccc--ceeeeEEccCCce---eeeccCCce-------eeE-EEeCC
Confidence              777753 4445444469999998876654433222  3568888887652   112211111       111 12455


Q ss_pred             cEEEEEeC---------CCC-eeeEEEEecCCC-eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeE
Q 006979          313 ELFFVTDR---------KNG-FWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (623)
Q Consensus       313 ~l~~~~~~---------~~g-~~~L~~~d~~~~-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~  381 (623)
                      .++.-.+.         +.| ...||.-. +++ ..+.+...+..+..|.-              -+.++||.+..+|..
T Consensus       184 ~ivigRntydLP~WK~YkGGtrGklWis~-d~g~tFeK~vdl~~~vS~PmI--------------V~~RvYFlsD~eG~G  248 (668)
T COG4946         184 IIVIGRNTYDLPHWKGYKGGTRGKLWISS-DGGKTFEKFVDLDGNVSSPMI--------------VGERVYFLSDHEGVG  248 (668)
T ss_pred             EEEEccCcccCcccccccCCccceEEEEe-cCCcceeeeeecCCCcCCceE--------------EcceEEEEecccCcc
Confidence            33322221         011 12455332 333 44555544444444422              357899999999999


Q ss_pred             EEEEEeCCCCceeecccCCc-ceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979          382 YLGILDDFGHSLSLLDIPFT-DIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       382 ~L~~~d~~~~~~~~lt~~~~-~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                      +||..|++++.+++-|.-.. -...++.|+++++|...     ..||.+|+++..++.|.
T Consensus       249 nlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~-----GdIylydP~td~lekld  303 (668)
T COG4946         249 NLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNA-----GDIYLYDPETDSLEKLD  303 (668)
T ss_pred             ceEEeccCCchhhhcCCchhccccccCCCCcEEEEecC-----CcEEEeCCCcCcceeee
Confidence            99999999999887765321 12344889999999876     57999999888766654

>PLN02442 S-formylglutathione hydrolase

Probab=99.34  E-value=1e-11  Score=125.31  Aligned_cols=147  Identities=19%  Similarity=0.230  Sum_probs=94.0

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-CHHhHHHHcCceEEEEECCCCCC--
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGST--  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-~~~~~~~a~~G~~v~~~d~rGs~--  536 (623)
                      ..+.+.+.++.-+..+...+|.|...     +++++|+|+++||.+........ ....+.++.+||+|+.||..+.|  
T Consensus        17 ~~~~~~~~s~~l~~~~~~~vy~P~~~-----~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~   91 (283)
T PLN02442         17 FNRRYKHFSSTLGCSMTFSVYFPPAS-----DSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLN   91 (283)
T ss_pred             EEEEEEEeccccCCceEEEEEcCCcc-----cCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCC
Confidence            44566666653577899999999741     15689999999998544322111 12345567789999999975433  


Q ss_pred             ----------CCchh-HHHhhccCCccchHHH-HH-HHHHHHHhC-CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEE
Q 006979          537 ----------GYGRE-FRERLLGRWGIVDVND-CC-SCATFLVGS-GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAG  601 (623)
Q Consensus       537 ----------~~g~~-~~~~~~~~~g~~~~~D-~~-~~~~~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~  601 (623)
                                +++.. |.+.....|+.....+ +. +..+++.+. ..+|++|++|+|+||||++++.++ .+|++|+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~  171 (283)
T PLN02442         92 VEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSV  171 (283)
T ss_pred             CCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEE
Confidence                      11111 1111122222111112 22 222233332 236899999999999999999988 889999999


Q ss_pred             EecccCCCHH
Q 006979          602 ASLYGVSIPV  611 (623)
Q Consensus       602 v~~~g~~d~~  611 (623)
                      ++.+|+.|+.
T Consensus       172 ~~~~~~~~~~  181 (283)
T PLN02442        172 SAFAPIANPI  181 (283)
T ss_pred             EEECCccCcc
Confidence            9999998753

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=99.33  E-value=3.5e-10  Score=114.30  Aligned_cols=301  Identities=13%  Similarity=0.146  Sum_probs=158.3

Q ss_pred             cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEE
Q 006979           91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK  169 (623)
Q Consensus        91 ~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~  169 (623)
                      +.+.+|.+ |.++.|...+   +|+..||.++..++ +..+|+..+-.      ...++..+..++.++|.... .+|+.
T Consensus        38 F~~~~ft~dG~kllF~s~~---dg~~nly~lDL~t~-~i~QLTdg~g~------~~~g~~~s~~~~~~~Yv~~~-~~l~~  106 (386)
T PF14583_consen   38 FYQNCFTDDGRKLLFASDF---DGNRNLYLLDLATG-EITQLTDGPGD------NTFGGFLSPDDRALYYVKNG-RSLRR  106 (386)
T ss_dssp             TTS--B-TTS-EEEEEE-T---TSS-EEEEEETTT--EEEE---SS-B-------TTT-EE-TTSSEEEEEETT-TEEEE
T ss_pred             ecCCCcCCCCCEEEEEecc---CCCcceEEEEcccC-EEEECccCCCC------CccceEEecCCCeEEEEECC-CeEEE
Confidence            45778877 7778776554   47888999998865 77888864300      11133444344477776533 35999


Q ss_pred             EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC---C----------CCceeEEEEEEcCCCCcccc
Q 006979          170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD---A----------LNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       170 ~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~---~----------~~~~~~L~~idl~~g~~~~~  236 (623)
                      +|++++  +.+.|-..++ ...-+.....+.|++.++.+.......   +          ..+...|+.||+.+|+   .
T Consensus       107 vdL~T~--e~~~vy~~p~-~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~---~  180 (386)
T PF14583_consen  107 VDLDTL--EERVVYEVPD-DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE---R  180 (386)
T ss_dssp             EETTT----EEEEEE--T-TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-----E
T ss_pred             EECCcC--cEEEEEECCc-ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc---e
Confidence            999987  5555544310 011233344467899988876543221   1          2357899999999998   7


Q ss_pred             eecccCCCcccceeeCC-CCCEEEEEEecCCCCCCCc--eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          237 KVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       237 ~~l~~~~~~~~~p~wSP-DG~~la~~~~~~~~~p~~~--~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      +.+.....+...+-+|| |...|.|.- ..   ||+.  .+||+++.++.+    .+.+....+.  +.+..--|++||+
T Consensus       181 ~~v~~~~~wlgH~~fsP~dp~li~fCH-EG---pw~~Vd~RiW~i~~dg~~----~~~v~~~~~~--e~~gHEfw~~DG~  250 (386)
T PF14583_consen  181 KVVFEDTDWLGHVQFSPTDPTLIMFCH-EG---PWDLVDQRIWTINTDGSN----VKKVHRRMEG--ESVGHEFWVPDGS  250 (386)
T ss_dssp             EEEEEESS-EEEEEEETTEEEEEEEEE--S----TTTSS-SEEEEETTS-------EESS---TT--EEEEEEEE-TTSS
T ss_pred             eEEEecCccccCcccCCCCCCEEEEec-cC---CcceeceEEEEEEcCCCc----ceeeecCCCC--cccccccccCCCC
Confidence            88888888888898998 566777763 22   4664  479999988763    2333222222  5667788999999


Q ss_pred             -EEEEEeCCCC-eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE-------------EC
Q 006979          314 -LFFVTDRKNG-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-------------QN  378 (623)
Q Consensus       314 -l~~~~~~~~g-~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~-------------~~  378 (623)
                       ++|......+ ...|+.+|+.+++.+.+...+...          .+..   ++|++.++=-..             -.
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~----------H~~s---s~Dg~L~vGDG~d~p~~v~~~~~~~~~  317 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCS----------HFMS---SPDGKLFVGDGGDAPVDVADAGGYKIE  317 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEE----------EEEE----TTSSEEEEEE----------------
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEEEeCCcee----------eeEE---cCCCCEEEecCCCCCccccccccceec
Confidence             8887764233 356889999998877665332110          0111   113322211000             01


Q ss_pred             CeEEEEEEeCCCCceeecccCCc-------------ceEeeeecCCEEEEEEecCCCCCeEEEEEcC
Q 006979          379 GRSYLGILDDFGHSLSLLDIPFT-------------DIDNITLGNDCLFVEGASGVEPSSVAKVTLD  432 (623)
Q Consensus       379 g~~~L~~~d~~~~~~~~lt~~~~-------------~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~  432 (623)
                      ...-||++++..+....|.....             ..-.+++|++.|+|.+. ...++.||.+++.
T Consensus       318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd-~~G~~~vY~v~i~  383 (386)
T PF14583_consen  318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD-MEGPPAVYLVEIP  383 (386)
T ss_dssp             ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE--TTSS-EEEEEE--
T ss_pred             CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC-CCCCccEEEEeCc
Confidence            23468888888776654443210             11234889999988764 4667899998864

>TIGR02821 fghA_ester_D S-formylglutathione hydrolase

Probab=99.33  E-value=1.9e-11  Score=123.03  Aligned_cols=147  Identities=19%  Similarity=0.191  Sum_probs=94.9

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHH-HcCceEEEEECC--CCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNY--GGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~-a~~G~~v~~~d~--rGs~  536 (623)
                      +.+.+++.+...+.++...+|.|++  +.   .++.|+|+++||.+............+.+ ++.||.|++||.  ||.+
T Consensus        12 ~~~~~~~~s~~~~~~~~~~v~~P~~--~~---~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~   86 (275)
T TIGR02821        12 TQGFYRHKSETCGVPMTFGVFLPPQ--AA---AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTG   86 (275)
T ss_pred             EEEEEEEeccccCCceEEEEEcCCC--cc---CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCC
Confidence            3445566655356778889999976  22   34689999999986443322222233445 457999999997  6654


Q ss_pred             CCch--h---------HHHhhccCCc--cchHHHHHHHHHHHHhC-CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEE
Q 006979          537 GYGR--E---------FRERLLGRWG--IVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAG  601 (623)
Q Consensus       537 ~~g~--~---------~~~~~~~~~g--~~~~~D~~~~~~~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~  601 (623)
                      ..+.  .         |.+.....+.  ......+...+..++++ ..+|++|++|+|+||||++++.++ .+|+.|+++
T Consensus        87 ~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~  166 (275)
T TIGR02821        87 IAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSV  166 (275)
T ss_pred             CCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEE
Confidence            3221  1         1111011111  11233334444444443 448899999999999999999999 889999999


Q ss_pred             EecccCCCHH
Q 006979          602 ASLYGVSIPV  611 (623)
Q Consensus       602 v~~~g~~d~~  611 (623)
                      ++.+|+.++.
T Consensus       167 ~~~~~~~~~~  176 (275)
T TIGR02821       167 SAFAPIVAPS  176 (275)
T ss_pred             EEECCccCcc
Confidence            9999997653

This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.

>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway

Probab=99.32  E-value=6.4e-12  Score=122.01  Aligned_cols=123  Identities=17%  Similarity=0.142  Sum_probs=88.7

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCC-CchhHH--Hhhcc---
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG-YGREFR--ERLLG---  548 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~-~g~~~~--~~~~~---  548 (623)
                      +.+++..|++       .++.|.||++|+..+  ..+.....+..|+++||.|++||+.+..+ ......  .....   
T Consensus         1 ~~ay~~~P~~-------~~~~~~Vvv~~d~~G--~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~   71 (218)
T PF01738_consen    1 IDAYVARPEG-------GGPRPAVVVIHDIFG--LNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELF   71 (218)
T ss_dssp             EEEEEEEETT-------SSSEEEEEEE-BTTB--S-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCH
T ss_pred             CeEEEEeCCC-------CCCCCEEEEEcCCCC--CchHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHH
Confidence            4678888986       457899999998732  33444567899999999999999876544 111111  11111   


Q ss_pred             -CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEeccc
Q 006979          549 -RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYG  606 (623)
Q Consensus       549 -~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g  606 (623)
                       ........|+.+++++|.+++.++.+||+++|+|+||.+++.++...+.++|+|+.+|
T Consensus        72 ~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~~~~~a~v~~yg  130 (218)
T PF01738_consen   72 APRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARDPRVDAAVSFYG  130 (218)
T ss_dssp             HHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCTTTSSEEEEES-
T ss_pred             hhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhccccceEEEEcC
Confidence             1122346888999999999998999999999999999999999955578999999999

Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.

>COG2936 Predicted acyl esterases [General function prediction only]

Probab=99.30  E-value=1e-11  Score=131.25  Aligned_cols=135  Identities=21%  Similarity=0.257  Sum_probs=109.9

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC----CH--HhHHHHcCceEEEEECCCCC
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NL--SIQYWTSRGWAFVDVNYGGS  535 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~----~~--~~~~~a~~G~~v~~~d~rGs  535 (623)
                      ..+.++.. ||..|+.-+|.|++       .++.|+|+..+=.|.......+    ..  ..++|+.+||+|+.+|.||+
T Consensus        20 ~~v~V~MR-DGvrL~~dIy~Pa~-------~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~   91 (563)
T COG2936          20 RDVMVPMR-DGVRLAADIYRPAG-------AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGR   91 (563)
T ss_pred             eeeeEEec-CCeEEEEEEEccCC-------CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEeccccc
Confidence            45778888 99999999999998       7889999998844433332111    11  12379999999999999999


Q ss_pred             CCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       536 ~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      +++...+..     +...+.+|-.+.|+||++|++.+ .+|+++|.||+|+..+++| .+|.-.||++...+..|+
T Consensus        92 ~~SeG~~~~-----~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~  161 (563)
T COG2936          92 GGSEGVFDP-----ESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDR  161 (563)
T ss_pred             ccCCcccce-----eccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccc
Confidence            988776543     22258899999999999999996 7999999999999999999 666778999999999996

>PRK10162 acetyl esterase; Provisional

Probab=99.28  E-value=3.1e-11  Score=123.91  Aligned_cols=130  Identities=17%  Similarity=0.205  Sum_probs=99.5

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc-CcCCHHhHHHHc-CceEEEEECCCCCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGY  538 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~-~~~~~~~~~~a~-~G~~v~~~d~rGs~~~  538 (623)
                      .+.+.++.. +| .+.+.+|.|..        ...|+||++|||.+.... ..+......++. .|+.|+.+|||.+.++
T Consensus        57 ~~~~~i~~~-~g-~i~~~~y~P~~--------~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~  126 (318)
T PRK10162         57 TRAYMVPTP-YG-QVETRLYYPQP--------DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA  126 (318)
T ss_pred             EEEEEEecC-CC-ceEEEEECCCC--------CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence            567778776 56 58999999954        235899999999754333 244556777877 5999999999986542


Q ss_pred             chhHHHhhccCCccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHh-cC------CCceeEEEecccCC
Q 006979          539 GREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAAL-AF------RDTFKAGASLYGVS  608 (623)
Q Consensus       539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~-~~------~~~f~a~v~~~g~~  608 (623)
                      .          + ....+|+.++++|+.++   -.+|++||+|+|+|+||.+++.++ ..      +..++++|.++|+.
T Consensus       127 ~----------~-p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~  195 (318)
T PRK10162        127 R----------F-PQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY  195 (318)
T ss_pred             C----------C-CCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence            1          1 22479999999999764   247999999999999999999877 31      35789999999998


Q ss_pred             CHH
Q 006979          609 IPV  611 (623)
Q Consensus       609 d~~  611 (623)
                      |+.
T Consensus       196 ~~~  198 (318)
T PRK10162        196 GLR  198 (318)
T ss_pred             CCC
Confidence            763

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.28  E-value=3.4e-10  Score=112.03  Aligned_cols=214  Identities=15%  Similarity=0.151  Sum_probs=129.4

Q ss_pred             CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEE-eCCEEEEEeCCCCcEEE
Q 006979           92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI-FGDTVIFSNYKDQRLYK  169 (623)
Q Consensus        92 ~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~-s~d~l~f~~~~~~~l~~  169 (623)
                      ++|.|++ ++.+||++....     .|++++..+  ....+...+ .       . .+.... .++.+++...  +.+.+
T Consensus         3 Egp~~d~~~g~l~~~D~~~~-----~i~~~~~~~--~~~~~~~~~-~-------~-~G~~~~~~~g~l~v~~~--~~~~~   64 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGG-----RIYRVDPDT--GEVEVIDLP-G-------P-NGMAFDRPDGRLYVADS--GGIAV   64 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTT-----EEEEEETTT--TEEEEEESS-S-------E-EEEEEECTTSEEEEEET--TCEEE
T ss_pred             cceEEECCCCEEEEEEcCCC-----EEEEEECCC--CeEEEEecC-C-------C-ceEEEEccCCEEEEEEc--CceEE
Confidence            5789998 999999997643     388887763  232222211 0       0 122222 2346666643  33666


Q ss_pred             EeCCCCCCCceecCCC-CCC-CCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCccc
Q 006979          170 HSIDSKDSSPLPITPD-YGE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA  247 (623)
Q Consensus       170 ~d~~~g~~~~~~Lt~~-~~~-~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~  247 (623)
                      +|++++  ..+.+... .+. +..+.+|..++|+|+ |++...............||+++.+ ++   ++.+..+..+.+
T Consensus        65 ~d~~~g--~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pN  137 (246)
T PF08450_consen   65 VDPDTG--KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPN  137 (246)
T ss_dssp             EETTTT--EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEE
T ss_pred             EecCCC--cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce---EEEEecCccccc
Confidence            788876  55555443 112 467889999999998 4444332221111112789999998 65   566666666677


Q ss_pred             ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-eeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeee
Q 006979          248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN  326 (623)
Q Consensus       248 ~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~  326 (623)
                      +.+|||||+.|++....       ..+|+.++++..+. +..++++...... ...+.......+|.|| ++..  +...
T Consensus       138 Gi~~s~dg~~lyv~ds~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~-va~~--~~~~  206 (246)
T PF08450_consen  138 GIAFSPDGKTLYVADSF-------NGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLW-VADW--GGGR  206 (246)
T ss_dssp             EEEEETTSSEEEEEETT-------TTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EE-EEEE--TTTE
T ss_pred             ceEECCcchheeecccc-------cceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEE-EEEc--CCCE
Confidence            88999999999877532       45699999986543 4555555332211 0236678899999654 4554  4457


Q ss_pred             EEEEecCCCeEEEEe
Q 006979          327 LHKWIESNNEVLAIY  341 (623)
Q Consensus       327 L~~~d~~~~~~~~l~  341 (623)
                      |+++|+++.....+.
T Consensus       207 I~~~~p~G~~~~~i~  221 (246)
T PF08450_consen  207 IVVFDPDGKLLREIE  221 (246)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEECCCccEEEEEc
Confidence            999999844444444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02385 hydrolase; alpha/beta fold family protein

Probab=99.28  E-value=2.1e-11  Score=127.37  Aligned_cols=135  Identities=13%  Similarity=0.078  Sum_probs=97.3

Q ss_pred             EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhH
Q 006979          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF  542 (623)
Q Consensus       463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~  542 (623)
                      +..+.+. +|.++.+..+.|.+       +++.|+||++||.+... ...+...+..|+++||.|+.+|+||.|.+....
T Consensus        63 ~~~~~~~-~g~~l~~~~~~p~~-------~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~  133 (349)
T PLN02385         63 ESYEVNS-RGVEIFSKSWLPEN-------SRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGFGLSEGLH  133 (349)
T ss_pred             eeeEEcC-CCCEEEEEEEecCC-------CCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC
Confidence            3344445 89999998888865       45568999999984321 112345678899999999999999976543210


Q ss_pred             HHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       543 ~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                        .....+ ...++|+.+.++++..+...+..++.++||||||.+++.++ .+|+.++++|..+|...
T Consensus       134 --~~~~~~-~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~  198 (349)
T PLN02385        134 --GYIPSF-DDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCK  198 (349)
T ss_pred             --CCcCCH-HHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEeccccc
Confidence              000011 12367788888888765455667899999999999999988 88999999999988653

>PLN00021 chlorophyllase

Probab=99.25  E-value=5.2e-11  Score=120.95  Aligned_cols=118  Identities=22%  Similarity=0.224  Sum_probs=90.6

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI  552 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~  552 (623)
                      ..+++.++.|..       .+++|+||++||+..  ....|...++.++++||.|+++|++|..+.+           ..
T Consensus        37 ~~~p~~v~~P~~-------~g~~PvVv~lHG~~~--~~~~y~~l~~~Las~G~~VvapD~~g~~~~~-----------~~   96 (313)
T PLN00021         37 PPKPLLVATPSE-------AGTYPVLLFLHGYLL--YNSFYSQLLQHIASHGFIVVAPQLYTLAGPD-----------GT   96 (313)
T ss_pred             CCceEEEEeCCC-------CCCCCEEEEECCCCC--CcccHHHHHHHHHhCCCEEEEecCCCcCCCC-----------ch
Confidence            457888999976       677899999999843  3345667788899999999999998743211           12


Q ss_pred             chHHHHHHHHHHHHhC--------CCCCCCceEEEEcChHHHHHHHHh-cCC-----CceeEEEecccCCCH
Q 006979          553 VDVNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAAL-AFR-----DTFKAGASLYGVSIP  610 (623)
Q Consensus       553 ~~~~D~~~~~~~l~~~--------~~~d~~rv~i~G~S~GG~~~~~~~-~~~-----~~f~a~v~~~g~~d~  610 (623)
                      .+.+|+.++++|+.+.        ..+|.+|++|+|||+||++++.++ .++     ..|+++|...|+..+
T Consensus        97 ~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~  168 (313)
T PLN00021         97 DEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT  168 (313)
T ss_pred             hhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence            3456777778887752        236789999999999999999998 665     368999999987654

>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.25  E-value=2.5e-11  Score=116.53  Aligned_cols=127  Identities=25%  Similarity=0.229  Sum_probs=94.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-CCHHhHHHHcCceEEEEECCCCCCCCchhHHHhh---
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL---  546 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~---  546 (623)
                      +|...+++||.|...      .+..|+||++||+........ ..-+-......||.|+.||-     +.++|....   
T Consensus        43 ~g~~r~y~l~vP~g~------~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg-----~~~~wn~~~~~~  111 (312)
T COG3509          43 NGLKRSYRLYVPPGL------PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDG-----YDRAWNANGCGN  111 (312)
T ss_pred             CCCccceEEEcCCCC------CCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCc-----cccccCCCcccc
Confidence            577888999999873      344599999999954433221 12223333457999999952     333331111   


Q ss_pred             -----ccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          547 -----LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       547 -----~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                           ...-+..|+..+.+.+..|+.+.-|||+||.|.|.|.||.|+..++ .+|++|+|+..++|..
T Consensus       112 ~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~  179 (312)
T COG3509         112 WFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL  179 (312)
T ss_pred             cCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence                 1234567788899999999999899999999999999999999999 8899999999888865

>PRK10985 putative hydrolase; Provisional

Probab=99.22  E-value=1.1e-10  Score=120.36  Aligned_cols=134  Identities=17%  Similarity=0.142  Sum_probs=91.7

Q ss_pred             EeecCCCCeEEEEEEE-cCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHH
Q 006979          465 EFPTEVPGQKAYAYYY-PPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR  543 (623)
Q Consensus       465 ~~~~~~dg~~i~~~l~-~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~  543 (623)
                      .+... ||..+..... .|..       ....|+||++||.++..........+..++++||.|+.+|+||.++......
T Consensus        35 ~~~~~-dg~~~~l~w~~~~~~-------~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~  106 (324)
T PRK10985         35 RLELP-DGDFVDLAWSEDPAQ-------ARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLH  106 (324)
T ss_pred             EEECC-CCCEEEEecCCCCcc-------CCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCc
Confidence            34555 7776654322 2321       3456899999998644333233456788999999999999999765432111


Q ss_pred             HhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC--ceeEEEecccCCCHHH
Q 006979          544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD--TFKAGASLYGVSIPVI  612 (623)
Q Consensus       544 ~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g~~d~~~  612 (623)
                          ..+.....+|+..+++++.++.  ...++.++|||+||.+++.++ .+++  .++++|++++..|+..
T Consensus       107 ----~~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~  172 (324)
T PRK10985        107 ----RIYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEA  172 (324)
T ss_pred             ----ceECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHH
Confidence                1112234789999999998863  246899999999999877666 5543  4889999999888653

>PHA02857 monoglyceride lipase; Provisional

Probab=99.22  E-value=6.1e-11  Score=119.58  Aligned_cols=124  Identities=19%  Similarity=0.187  Sum_probs=94.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      ||..+++.+|.|..        .+.|+|+++||..  .....|...++.|+++||.|+++|+||.|.+....  .....+
T Consensus         9 ~g~~l~~~~~~~~~--------~~~~~v~llHG~~--~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~--~~~~~~   76 (276)
T PHA02857          9 DNDYIYCKYWKPIT--------YPKALVFISHGAG--EHSGRYEELAENISSLGILVFSHDHIGHGRSNGEK--MMIDDF   76 (276)
T ss_pred             CCCEEEEEeccCCC--------CCCEEEEEeCCCc--cccchHHHHHHHHHhCCCEEEEccCCCCCCCCCcc--CCcCCH
Confidence            79999999998842        3458999999983  34456777899999999999999999976543210  001111


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      . ..++|+...++++.+.  ...+++.++|||+||.+++.++ .+|++++++|..+|..+
T Consensus        77 ~-~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~  133 (276)
T PHA02857         77 G-VYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVN  133 (276)
T ss_pred             H-HHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccc
Confidence            1 2367888888877654  2246899999999999999988 88999999999999765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=99.18  E-value=8.9e-09  Score=104.22  Aligned_cols=279  Identities=11%  Similarity=0.121  Sum_probs=142.6

Q ss_pred             CCCCCCCcccCCCCC-ccceeeeecCCceEEEeCCEEEEEeCCCC--cEEEEeCCCCCCCceecCCCCCCCCeeecceee
Q 006979          122 AKAGDEPSDITPKEY-AVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF  198 (623)
Q Consensus       122 ~~~gg~~~~l~p~~~-~~r~~~~~~g~~~~~~s~d~l~f~~~~~~--~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~  198 (623)
                      +.+|.+..+|++... +.+  .+= -..+|...+++++|....++  +||.+||+++  +.+|||.+.   ........+
T Consensus        17 ~~TG~~VtrLT~~~~~~h~--~YF-~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~--~i~QLTdg~---g~~~~g~~~   88 (386)
T PF14583_consen   17 PDTGHRVTRLTPPDGHSHR--LYF-YQNCFTDDGRKLLFASDFDGNRNLYLLDLATG--EITQLTDGP---GDNTFGGFL   88 (386)
T ss_dssp             TTT--EEEE-S-TTS-EE-----T-TS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS----B-TTT-EE
T ss_pred             CCCCceEEEecCCCCcccc--eee-cCCCcCCCCCEEEEEeccCCCcceEEEEcccC--EEEECccCC---CCCccceEE
Confidence            444445566666542 112  111 12344444458888876665  5999999998  899999962   122235679


Q ss_pred             CCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc-CCCcccceee--CCCCCEEEEEEecCCCC-------
Q 006979          199 DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFPRM--DPRGERMAWIEWHHPNM-------  268 (623)
Q Consensus       199 sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~-~~~~~~~p~w--SPDG~~la~~~~~~~~~-------  268 (623)
                      +|+++.++|+...         ..|+++|+++.+   .+.|.. ..++...-.|  ..|+++++.++..+...       
T Consensus        89 s~~~~~~~Yv~~~---------~~l~~vdL~T~e---~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~  156 (386)
T PF14583_consen   89 SPDDRALYYVKNG---------RSLRRVDLDTLE---ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWK  156 (386)
T ss_dssp             -TTSSEEEEEETT---------TEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHH
T ss_pred             ecCCCeEEEEECC---------CeEEEEECCcCc---EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccH
Confidence            9999999998642         469999999987   556643 3445443455  56799988887543321       


Q ss_pred             -------CCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC-c-EEEEEeCCCC--eeeEEEEecCCCeE
Q 006979          269 -------PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG-E-LFFVTDRKNG--FWNLHKWIESNNEV  337 (623)
Q Consensus       269 -------p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG-~-l~~~~~~~~g--~~~L~~~d~~~~~~  337 (623)
                             ....++|+.+|+.++.   .+.++.. .    ..+..+.++|.. . +.|+..-.-.  ..+||.++.++...
T Consensus       157 ~f~e~~~a~p~~~i~~idl~tG~---~~~v~~~-~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~  228 (386)
T PF14583_consen  157 GFREFYEARPHCRIFTIDLKTGE---RKVVFED-T----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV  228 (386)
T ss_dssp             HHHHHHHC---EEEEEEETTT-----EEEEEEE-S----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred             HHHHHHhhCCCceEEEEECCCCc---eeEEEec-C----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc
Confidence                   1135789999999872   3444443 3    234467778753 3 4454432111  24899999988887


Q ss_pred             EEEeec--ccccccccccccCcceeEEeecCCCCEEEEEEEE-CC-eEEEEEEeCCCCceeecccCCcceEee-eecCCE
Q 006979          338 LAIYSL--DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ-NG-RSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDC  412 (623)
Q Consensus       338 ~~l~~~--~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~-~g-~~~L~~~d~~~~~~~~lt~~~~~v~~~-~~~~~~  412 (623)
                      +.+...  ...++..-|.+            ||..|++.+.. .+ ...|+.+|+++++.+.+..-.+...-. +.+++.
T Consensus       229 ~~v~~~~~~e~~gHEfw~~------------DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L  296 (386)
T PF14583_consen  229 KKVHRRMEGESVGHEFWVP------------DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKL  296 (386)
T ss_dssp             EESS---TTEEEEEEEE-T------------TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSE
T ss_pred             eeeecCCCCcccccccccC------------CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCE
Confidence            777632  22233344544            88888886653 33 446999999998877654332222222 455554


Q ss_pred             EEEEEecCC------------CCCeEEEEEcCCCcceeee
Q 006979          413 LFVEGASGV------------EPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       413 ~~~~~~s~~------------~~~~ly~~~l~~~~~~~lt  440 (623)
                      ++-=+++..            .-+-||+++++.++.+.|.
T Consensus       297 ~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~  336 (386)
T PF14583_consen  297 FVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA  336 (386)
T ss_dssp             EEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred             EEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence            443333211            1236788888877765554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=1.2e-07  Score=93.18  Aligned_cols=283  Identities=13%  Similarity=0.113  Sum_probs=156.5

Q ss_pred             CCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCC--ceEEEeCC
Q 006979           79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIFGD  155 (623)
Q Consensus        79 ~t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~--~~~~~s~d  155 (623)
                      +++-.+.....++.-+.++| ..++|-+ .++.+.|...-++.+..+| .... +...       ...|-  .-.+++.+
T Consensus        30 l~~~~~v~~~~nptyl~~~~~~~~LY~v-~~~~~~ggvaay~iD~~~G-~Lt~-ln~~-------~~~g~~p~yvsvd~~   99 (346)
T COG2706          30 LSLLQLVAELGNPTYLAVNPDQRHLYVV-NEPGEEGGVAAYRIDPDDG-RLTF-LNRQ-------TLPGSPPCYVSVDED   99 (346)
T ss_pred             cchhhhccccCCCceEEECCCCCEEEEE-EecCCcCcEEEEEEcCCCC-eEEE-eecc-------ccCCCCCeEEEECCC
Confidence            34444555556777889998 4455554 4555578887888876544 2222 1111       11111  22344444


Q ss_pred             -EEEE-EeCCCCcEEEEeCCC-CCCCcee----cCCCCCCCCee-----ecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          156 -TVIF-SNYKDQRLYKHSIDS-KDSSPLP----ITPDYGEPLVS-----YADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       156 -~l~f-~~~~~~~l~~~d~~~-g~~~~~~----Lt~~~~~~~~~-----~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                       +.+| .+...+.|-++.++. |  ....    +......+..|     .-...++|+|++|+.+.--.        .++
T Consensus       100 g~~vf~AnY~~g~v~v~p~~~dG--~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~--------Dri  169 (346)
T COG2706         100 GRFVFVANYHSGSVSVYPLQADG--SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT--------DRI  169 (346)
T ss_pred             CCEEEEEEccCceEEEEEcccCC--ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC--------ceE
Confidence             3444 445556666666643 2  2211    11111111111     11234899999887654321        457


Q ss_pred             EEEEcCCCCccccee--cccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC-CceeeeEEEcCCCCCcc
Q 006979          224 VAIALNGQNIQEPKV--LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       224 ~~idl~~g~~~~~~~--l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~-~~~~~~~~~~~~~~~~~  300 (623)
                      ++++++.|..+...+  +..+.+ .....|.|+||..|.+. .-      .++|-++..+.. +.+...+.+.-.+.++.
T Consensus       170 ~~y~~~dg~L~~~~~~~v~~G~G-PRHi~FHpn~k~aY~v~-EL------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~  241 (346)
T COG2706         170 FLYDLDDGKLTPADPAEVKPGAG-PRHIVFHPNGKYAYLVN-EL------NSTVDVLEYNPAVGKFEELQTIDTLPEDFT  241 (346)
T ss_pred             EEEEcccCccccccccccCCCCC-cceEEEcCCCcEEEEEe-cc------CCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence            777777776321111  112211 12345999999555443 32      345666666654 33333333222221110


Q ss_pred             --ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979          301 --ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (623)
Q Consensus       301 --~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~  378 (623)
                        .....+.-++||+++|++++..+.-.++.+|+.+++++.+.....+-..|      +.|.+.+   .++.|+.+..++
T Consensus       242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P------R~F~i~~---~g~~Liaa~q~s  312 (346)
T COG2706         242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP------RDFNINP---SGRFLIAANQKS  312 (346)
T ss_pred             CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC------ccceeCC---CCCEEEEEccCC
Confidence              23456778999998889998666667788999999877665322221111      3444543   677777777777


Q ss_pred             CeEEEEEEeCCCCceeeccc
Q 006979          379 GRSYLGILDDFGHSLSLLDI  398 (623)
Q Consensus       379 g~~~L~~~d~~~~~~~~lt~  398 (623)
                      ..-.+|++|.++|.+..+..
T Consensus       313 d~i~vf~~d~~TG~L~~~~~  332 (346)
T COG2706         313 DNITVFERDKETGRLTLLGR  332 (346)
T ss_pred             CcEEEEEEcCCCceEEeccc
Confidence            88899999999999887654

>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc

Probab=99.17  E-value=5.4e-11  Score=130.35  Aligned_cols=129  Identities=25%  Similarity=0.321  Sum_probs=94.0

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcC-c-eEEEEECCC-CCCCCchhHHHhhccC
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-G-WAFVDVNYG-GSTGYGREFRERLLGR  549 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~-G-~~v~~~d~r-Gs~~~g~~~~~~~~~~  549 (623)
                      ..++..+|.|....    ++++.|+||++|||+......... ....++.+ + ++|+.+||| |..|+.........++
T Consensus        77 dcl~l~i~~p~~~~----~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n  151 (493)
T cd00312          77 DCLYLNVYTPKNTK----PGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGN  151 (493)
T ss_pred             cCCeEEEEeCCCCC----CCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcc
Confidence            35777888887521    156789999999997544433332 23445543 3 999999999 8777755432223334


Q ss_pred             CccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCCC
Q 006979          550 WGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVSI  609 (623)
Q Consensus       550 ~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~d  609 (623)
                      +|   ..|+.+|++|+.++   --.||+||.|+|+|+||++++.++..   +.+|+++|+.+|...
T Consensus       152 ~g---~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~  214 (493)
T cd00312         152 YG---LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL  214 (493)
T ss_pred             hh---HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence            44   78999999999875   13799999999999999999988843   468999999988654

) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.

>PRK10749 lysophospholipase L2; Provisional

Probab=99.16  E-value=2e-10  Score=118.83  Aligned_cols=136  Identities=15%  Similarity=0.021  Sum_probs=95.6

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY  538 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~  538 (623)
                      ...+...+... +|..++...+.|..         +.|.||++||..  .....|...+..++++||.|+.+|+||.|.+
T Consensus        28 ~~~~~~~~~~~-~g~~l~~~~~~~~~---------~~~~vll~HG~~--~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S   95 (330)
T PRK10749         28 RQREEAEFTGV-DDIPIRFVRFRAPH---------HDRVVVICPGRI--ESYVKYAELAYDLFHLGYDVLIIDHRGQGRS   95 (330)
T ss_pred             hhccceEEEcC-CCCEEEEEEccCCC---------CCcEEEEECCcc--chHHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Confidence            45566667666 88889988776632         236899999973  3333455667788999999999999998766


Q ss_pred             chhHHHhhccCC--ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          539 GREFRERLLGRW--GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       539 g~~~~~~~~~~~--g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .+.......+..  -..-++|+.+.++.+.+.  .+..++.++||||||.+++.++ .+|+.++++|..+|..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~  166 (330)
T PRK10749         96 GRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMF  166 (330)
T ss_pred             CCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchh
Confidence            532211001111  012245677777766544  2457899999999999999877 8899999999998864

>PLN02652 hydrolase; alpha/beta fold family protein

Probab=99.16  E-value=1.9e-10  Score=120.93  Aligned_cols=134  Identities=15%  Similarity=0.073  Sum_probs=97.8

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~  541 (623)
                      ....+... ++..++...|.|..       +++.|+||++||...  ....|...+..|+++||.|+.+|+||.|...+.
T Consensus       111 ~~~~~~~~-~~~~l~~~~~~p~~-------~~~~~~Vl~lHG~~~--~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~  180 (395)
T PLN02652        111 ATSLFYGA-RRNALFCRSWAPAA-------GEMRGILIIIHGLNE--HSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL  180 (395)
T ss_pred             EEEEEECC-CCCEEEEEEecCCC-------CCCceEEEEECCchH--HHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence            44556666 78889999999964       445689999999843  333456778889999999999999997764332


Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCC---ceeEEEecccCCCH
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLYGVSIP  610 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~---~f~a~v~~~g~~d~  610 (623)
                      ..   .........+|+.++++++..+.  +..++.|+|||+||.+++.++.+|+   .++++|..+|..++
T Consensus       181 ~~---~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~~p~~~~~v~glVL~sP~l~~  247 (395)
T PLN02652        181 HG---YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAASYPSIEDKLEGIVLTSPALRV  247 (395)
T ss_pred             CC---CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHhccCcccccceEEEECccccc
Confidence            10   00011123578888999987652  2358999999999999998776654   78999999987644

>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]

Probab=99.15  E-value=1.7e-10  Score=103.72  Aligned_cols=132  Identities=17%  Similarity=0.232  Sum_probs=92.8

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc---CcCCHHhHHHHcCceEEEEECCCCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGSTG  537 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~---~~~~~~~~~~a~~G~~v~~~d~rGs~~  537 (623)
                      .+.+.++.+ -| .+.+.+. |..       ....|+.|.+|.-|.....   ......+..|.++||+++.+||||-|+
T Consensus         4 ~~~v~i~Gp-~G-~le~~~~-~~~-------~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~   73 (210)
T COG2945           4 MPTVIINGP-AG-RLEGRYE-PAK-------TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGR   73 (210)
T ss_pred             CCcEEecCC-cc-cceeccC-CCC-------CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeeccccccc
Confidence            345666664 33 4664433 332       4567899999977643221   122345777899999999999999888


Q ss_pred             CchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       538 ~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      +..+|.      .|..+.+|+.++++|+.++.. +..-..+.|+|+|+++++.++ +.++ ....++..|..+.
T Consensus        74 S~G~fD------~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~  139 (210)
T COG2945          74 SQGEFD------NGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINA  139 (210)
T ss_pred             ccCccc------CCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCc
Confidence            877665      488899999999999998732 222347899999999999999 5554 3455666776663

>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated

Probab=99.14  E-value=6.3e-10  Score=111.88  Aligned_cols=131  Identities=12%  Similarity=0.072  Sum_probs=93.6

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC--cCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~--~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      +.+.|+.  +|..+.++++.|.+       .+ .|.||++|||+......  .+...+..|+++||.|+.+|+||.|.+.
T Consensus         3 ~~~~~~~--~~~~l~g~~~~p~~-------~~-~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~   72 (274)
T TIGR03100         3 RALTFSC--EGETLVGVLHIPGA-------SH-TTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSE   72 (274)
T ss_pred             eeEEEEc--CCcEEEEEEEcCCC-------CC-CCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCC
Confidence            3577776  57889999999965       22 35677778775432221  2335678899999999999999976543


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCC
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSI  609 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d  609 (623)
                      ...     ..+ ....+|+.++++++.++. ...++|.++|+|+||++++.++.++..++++|..+|...
T Consensus        73 ~~~-----~~~-~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~~~~v~~lil~~p~~~  135 (274)
T TIGR03100        73 GEN-----LGF-EGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPADLRVAGLVLLNPWVR  135 (274)
T ss_pred             CCC-----CCH-HHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhhCCCccEEEEECCccC
Confidence            211     111 123589999999998752 123689999999999999988855578999999998743

This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.

>COG0657 Aes Esterase/lipase [Lipid metabolism]

Probab=99.14  E-value=2.4e-10  Score=117.43  Aligned_cols=126  Identities=20%  Similarity=0.180  Sum_probs=96.0

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC--HHhHHHHcCceEEEEECCCCCCCCchhHHHhhcc
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG  548 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~--~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~  548 (623)
                      .+..+...+|.|...     ...+.|+||++|||.+........  ......+..|+.|+.+|||-..++          
T Consensus        60 ~~~~~~~~~y~p~~~-----~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~----------  124 (312)
T COG0657          60 SGDGVPVRVYRPDRK-----AAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH----------  124 (312)
T ss_pred             CCCceeEEEECCCCC-----CCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC----------
Confidence            455577889998211     155789999999997655544333  456666779999999999965433          


Q ss_pred             CCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-c-CC---CceeEEEecccCCCHHH
Q 006979          549 RWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-A-FR---DTFKAGASLYGVSIPVI  612 (623)
Q Consensus       549 ~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~-~~---~~f~a~v~~~g~~d~~~  612 (623)
                       .-...++|+.++++|+.++.   -+|++||+|+|+|+||++++.++ . ..   ...++.+.++|..|+..
T Consensus       125 -~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~  195 (312)
T COG0657         125 -PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS  195 (312)
T ss_pred             -CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence             12345899999999999874   48999999999999999999888 2 22   25789999999998765

>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional

Probab=99.13  E-value=7.3e-10  Score=125.33  Aligned_cols=95  Identities=17%  Similarity=0.089  Sum_probs=81.0

Q ss_pred             HHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh---------------CCCCCCCceEEE
Q 006979          515 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG---------------SGKADEKRLCIT  579 (623)
Q Consensus       515 ~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~---------------~~~~d~~rv~i~  579 (623)
                      ...++|+.+||+|+.+|.||.++++..+.     .++..+.+|+.++|+||..               ++|. ..|||++
T Consensus       270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~~-----~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGkVGm~  343 (767)
T PRK05371        270 SLNDYFLPRGFAVVYVSGIGTRGSDGCPT-----TGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGKVAMT  343 (767)
T ss_pred             hHHHHHHhCCeEEEEEcCCCCCCCCCcCc-----cCCHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCeeEEE
Confidence            46789999999999999999988777542     2456789999999999984               4555 4799999


Q ss_pred             EcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhh
Q 006979          580 GGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISE  615 (623)
Q Consensus       580 G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~  615 (623)
                      |.||||+++++++ +.++.++|+|+.+|++|+..++.
T Consensus       344 G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr  380 (767)
T PRK05371        344 GKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYR  380 (767)
T ss_pred             EEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhh
Confidence            9999999999888 67889999999999999977653

>COG4099 Predicted peptidase [General function prediction only]

Probab=99.13  E-value=2.9e-10  Score=108.38  Aligned_cols=134  Identities=22%  Similarity=0.320  Sum_probs=90.9

Q ss_pred             EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCC-CEEEEecCCCCCcccCcCC----HHhHHHH--cCceEEEEECCCCCC
Q 006979          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKP-PLLVKSHGGPTSEARGILN----LSIQYWT--SRGWAFVDVNYGGST  536 (623)
Q Consensus       464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~-Pliv~~hGg~~~~~~~~~~----~~~~~~a--~~G~~v~~~d~rGs~  536 (623)
                      ++|.....|.++...+|.|++  |.+  ++++ |++|++||+..........    .-+-.|+  +-++-|++|.|--  
T Consensus       163 ~~f~d~~tgneLkYrly~Pkd--y~p--dkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~--  236 (387)
T COG4099         163 VEFYDESTGNELKYRLYTPKD--YAP--DKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNP--  236 (387)
T ss_pred             eEeeccccCceeeEEEecccc--cCC--CCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccccc--
Confidence            334333257889999999988  665  7776 9999999995444332111    1111222  3457778777431  


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                          -|.+  ..+--.......+.+++ -|.++..||.+||.++|.|+||+.+.+++ .+|+.|+|++.++|=-|
T Consensus       237 ----if~d--~e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d  305 (387)
T COG4099         237 ----IFAD--SEEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGD  305 (387)
T ss_pred             ----cccc--cccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCc
Confidence                1111  11111112334555555 78889999999999999999999999999 89999999999999887

>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]

Probab=99.10  E-value=6.1e-10  Score=107.64  Aligned_cols=135  Identities=15%  Similarity=0.104  Sum_probs=101.5

Q ss_pred             EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhH
Q 006979          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF  542 (623)
Q Consensus       463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~  542 (623)
                      .-.+.+. .|..+....+.|.+.      .++.-+|+++||.. ......|...+..|+..||.|+..|++|.|.+..- 
T Consensus        29 ~~~~~n~-rG~~lft~~W~p~~~------~~pr~lv~~~HG~g-~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl-   99 (313)
T KOG1455|consen   29 ESFFTNP-RGAKLFTQSWLPLSG------TEPRGLVFLCHGYG-EHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGL-   99 (313)
T ss_pred             eeeEEcC-CCCEeEEEecccCCC------CCCceEEEEEcCCc-ccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCC-
Confidence            3344555 799999999999761      36678999999982 33335677789999999999999999997654321 


Q ss_pred             HHhhccCCc--cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          543 RERLLGRWG--IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       543 ~~~~~~~~g--~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                          .....  ..-++|+.+-++.+..+..--.-..+++|+||||.++|.++ ++|+.+.++|..+|.+-+
T Consensus       100 ----~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i  166 (313)
T KOG1455|consen  100 ----HAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKI  166 (313)
T ss_pred             ----cccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeeccccc
Confidence                11111  12367888888877776544445789999999999999999 799999999999997644

>COG1647 Esterase/lipase [General function prediction only]

Probab=99.09  E-value=3.3e-10  Score=104.10  Aligned_cols=103  Identities=17%  Similarity=0.194  Sum_probs=86.5

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      -.||++||..  +..........++.++||.|.+|+|+|.|--.+.+.+....+|    .+|+.++.++|.++++   +.
T Consensus        16 ~AVLllHGFT--Gt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~e   86 (243)
T COG1647          16 RAVLLLHGFT--GTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DE   86 (243)
T ss_pred             EEEEEEeccC--CCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---Ce
Confidence            5789999983  3444677889999999999999999998888888887766667    7999999999999875   69


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      |+|.|.||||-+++.++ ++|  .+++|..++..+
T Consensus        87 I~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~  119 (243)
T COG1647          87 IAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVN  119 (243)
T ss_pred             EEEEeecchhHHHHHHHhhCC--ccceeeecCCcc
Confidence            99999999999999999 666  577776666544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.09  E-value=1.9e-07  Score=94.64  Aligned_cols=236  Identities=8%  Similarity=0.023  Sum_probs=128.2

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .+++....++.|+++|+.++ .....+...     .....+.|+|+|+.+++.....        ..|+++|+.+++.  
T Consensus        44 ~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-----~~~~~~~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~~--  107 (300)
T TIGR03866        44 LLYVCASDSDTIQVIDLATG-EVIGTLPSG-----PDPELFALHPNGKILYIANEDD--------NLVTVIDIETRKV--  107 (300)
T ss_pred             EEEEEECCCCeEEEEECCCC-cEEEeccCC-----CCccEEEECCCCCEEEEEcCCC--------CeEEEEECCCCeE--
Confidence            45566666778999999876 222334332     1123467999999876654322        5699999987641  


Q ss_pred             ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~  315 (623)
                      +..+..+. ......|+|||+.+++...+       ...++.+|..++..  ......+      .......|++||+.+
T Consensus       108 ~~~~~~~~-~~~~~~~~~dg~~l~~~~~~-------~~~~~~~d~~~~~~--~~~~~~~------~~~~~~~~s~dg~~l  171 (300)
T TIGR03866       108 LAEIPVGV-EPEGMAVSPDGKIVVNTSET-------TNMAHFIDTKTYEI--VDNVLVD------QRPRFAEFTADGKEL  171 (300)
T ss_pred             EeEeeCCC-CcceEEECCCCCEEEEEecC-------CCeEEEEeCCCCeE--EEEEEcC------CCccEEEECCCCCEE
Confidence            22232222 23457899999988876532       22356667665421  1111111      233467899999944


Q ss_pred             EEEeCCCCeeeEEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979          316 FVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (623)
Q Consensus       316 ~~~~~~~g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~  394 (623)
                      +++....+  .++.+|+.+++. +.+........ +.. .....+.+.   ++++.+++....+  .++.++|..+++..
T Consensus       172 ~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~s---~dg~~~~~~~~~~--~~i~v~d~~~~~~~  242 (300)
T TIGR03866       172 WVSSEIGG--TVSVIDVATRKVIKKITFEIPGVH-PEA-VQPVGIKLT---KDGKTAFVALGPA--NRVAVVDAKTYEVL  242 (300)
T ss_pred             EEEcCCCC--EEEEEEcCcceeeeeeeecccccc-ccc-CCccceEEC---CCCCEEEEEcCCC--CeEEEEECCCCcEE
Confidence            44332123  577788877754 33321100000 000 000122232   3777766654323  35778898877664


Q ss_pred             e-cccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          395 L-LDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       395 ~-lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      . +..+. .+..+  +++++.++....   ....|.++|+++++.
T Consensus       243 ~~~~~~~-~~~~~~~~~~g~~l~~~~~---~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       243 DYLLVGQ-RVWQLAFTPDEKYLLTTNG---VSNDVSVIDVAALKV  283 (300)
T ss_pred             EEEEeCC-CcceEEECCCCCEEEEEcC---CCCeEEEEECCCCcE
Confidence            3 32222 23233  667776654432   234688999888763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.07  E-value=2.4e-07  Score=93.91  Aligned_cols=229  Identities=14%  Similarity=0.075  Sum_probs=128.5

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      ++++...++.|+++|+.++ .....+...     .......|+|||+.++.+....        ..|+++|+.+++.  .
T Consensus         3 ~~~s~~~d~~v~~~d~~t~-~~~~~~~~~-----~~~~~l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~~--~   66 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATL-EVTRTFPVG-----QRPRGITLSKDGKLLYVCASDS--------DTIQVIDLATGEV--I   66 (300)
T ss_pred             EEEEecCCCEEEEEECCCC-ceEEEEECC-----CCCCceEECCCCCEEEEEECCC--------CeEEEEECCCCcE--E
Confidence            5666667888999999876 222333321     2234578999999776554322        5689999988762  2


Q ss_pred             eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEE
Q 006979          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (623)
Q Consensus       237 ~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~  316 (623)
                      ..+..+.+ .....|+|||+.|+....+       ...|+++|+.+..   ....+.. .    ..+..+.|+|||++++
T Consensus        67 ~~~~~~~~-~~~~~~~~~g~~l~~~~~~-------~~~l~~~d~~~~~---~~~~~~~-~----~~~~~~~~~~dg~~l~  130 (300)
T TIGR03866        67 GTLPSGPD-PELFALHPNGKILYIANED-------DNLVTVIDIETRK---VLAEIPV-G----VEPEGMAVSPDGKIVV  130 (300)
T ss_pred             EeccCCCC-ccEEEECCCCCEEEEEcCC-------CCeEEEEECCCCe---EEeEeeC-C----CCcceEEECCCCCEEE
Confidence            33433332 2456799999977655322       2358999987652   1222221 1    2345789999999555


Q ss_pred             EEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce-ee
Q 006979          317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SL  395 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~-~~  395 (623)
                      .... .+ ..++.+|..+++............         ...+.   ++++.++++...++  .++++|+++++. +.
T Consensus       131 ~~~~-~~-~~~~~~d~~~~~~~~~~~~~~~~~---------~~~~s---~dg~~l~~~~~~~~--~v~i~d~~~~~~~~~  194 (300)
T TIGR03866       131 NTSE-TT-NMAHFIDTKTYEIVDNVLVDQRPR---------FAEFT---ADGKELWVSSEIGG--TVSVIDVATRKVIKK  194 (300)
T ss_pred             EEec-CC-CeEEEEeCCCCeEEEEEEcCCCcc---------EEEEC---CCCCEEEEEcCCCC--EEEEEEcCcceeeee
Confidence            5443 22 235556776665432222111111         12222   27777777654454  466778877654 33


Q ss_pred             cccCC-----cce--Ee--eeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          396 LDIPF-----TDI--DN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       396 lt~~~-----~~v--~~--~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ++...     ...  ..  ++++++.+++...+.   ..+.++++++++.
T Consensus       195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~---~~i~v~d~~~~~~  241 (300)
T TIGR03866       195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA---NRVAVVDAKTYEV  241 (300)
T ss_pred             eeecccccccccCCccceEECCCCCEEEEEcCCC---CeEEEEECCCCcE
Confidence            43211     011  11  266677665543322   3588888877654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=1.5e-06  Score=85.71  Aligned_cols=247  Identities=15%  Similarity=0.140  Sum_probs=144.5

Q ss_pred             CCcEEEEeCCCCCCCc--eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc
Q 006979          164 DQRLYKHSIDSKDSSP--LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS  241 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~--~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~  241 (623)
                      ++.||++++++.....  .++...    .....-..|+|++++|+.+.++...    -.-.-|.+|.++|+   .+.+..
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~----~~nptyl~~~~~~~~LY~v~~~~~~----ggvaay~iD~~~G~---Lt~ln~   83 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAE----LGNPTYLAVNPDQRHLYVVNEPGEE----GGVAAYRIDPDDGR---LTFLNR   83 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccc----cCCCceEEECCCCCEEEEEEecCCc----CcEEEEEEcCCCCe---EEEeec
Confidence            4568888877421111  122211    1222346799999999888775322    12456778877777   443321


Q ss_pred             ---CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeee-EEE--cCCCCC-cc--ccCcCceeCCCC
Q 006979          242 ---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR-VCV--AGFDPT-IV--ESPTEPKWSSKG  312 (623)
Q Consensus       242 ---~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~-~~~--~~~~~~-~~--~~~~~~~ws~DG  312 (623)
                         ...-....+.++||+.|+... -+      ...|-+..+...|.+... .++  .+..+. .+  .......++|||
T Consensus        84 ~~~~g~~p~yvsvd~~g~~vf~An-Y~------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~  156 (346)
T COG2706          84 QTLPGSPPCYVSVDEDGRFVFVAN-YH------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG  156 (346)
T ss_pred             cccCCCCCeEEEECCCCCEEEEEE-cc------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence               112224567999999776554 22      345888888765543222 111  222111 00  113456789999


Q ss_pred             cEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (623)
Q Consensus       313 ~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~  392 (623)
                      +++++.+-  |.-+++.++++.|++....+-...-     ..|.+.+.|.+   +++..|+..+-++.--+|.++...++
T Consensus       157 ~~l~v~DL--G~Dri~~y~~~dg~L~~~~~~~v~~-----G~GPRHi~FHp---n~k~aY~v~EL~stV~v~~y~~~~g~  226 (346)
T COG2706         157 RYLVVPDL--GTDRIFLYDLDDGKLTPADPAEVKP-----GAGPRHIVFHP---NGKYAYLVNELNSTVDVLEYNPAVGK  226 (346)
T ss_pred             CEEEEeec--CCceEEEEEcccCccccccccccCC-----CCCcceEEEcC---CCcEEEEEeccCCEEEEEEEcCCCce
Confidence            98888887  5556666666666655444322111     13567888875   88888888888899999999988787


Q ss_pred             eeeccc----C--Cc---ceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          393 LSLLDI----P--FT---DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       393 ~~~lt~----~--~~---~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      +++|..    +  +.   ....+  ++++..+|.... .-..=.+|.++..+++++.+
T Consensus       227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~  283 (346)
T COG2706         227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELV  283 (346)
T ss_pred             EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEE
Confidence            776531    2  11   12233  556665554443 33345678888888875443

>PLN02511 hydrolase

Probab=99.06  E-value=2.1e-09  Score=113.42  Aligned_cols=138  Identities=14%  Similarity=0.090  Sum_probs=93.5

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~  541 (623)
                      +...+... ||..+....+.+....    .....|+||++||..++.....+...+..+.++||.|+++|+||.|+....
T Consensus        72 ~re~l~~~-DG~~~~ldw~~~~~~~----~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~  146 (388)
T PLN02511         72 RRECLRTP-DGGAVALDWVSGDDRA----LPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVT  146 (388)
T ss_pred             eEEEEECC-CCCEEEEEecCccccc----CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence            44456666 7877775333321100    023358999999985543322223355666789999999999997765321


Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCc--eeEEEecccCCCH
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDT--FKAGASLYGVSIP  610 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~--f~a~v~~~g~~d~  610 (623)
                          ....+-....+|+.++++++..+.  ...++.++|+|+||.+++.++ .+++.  +++++++++..|+
T Consensus       147 ----~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l  212 (388)
T PLN02511        147 ----TPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDL  212 (388)
T ss_pred             ----CcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCH
Confidence                111122345789999999998762  246899999999999999888 77776  7888888877776

>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]

Probab=99.06  E-value=8.3e-10  Score=111.72  Aligned_cols=129  Identities=19%  Similarity=0.178  Sum_probs=98.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc---cCcCCHHhHHH-HcCceEEEEECCCCCCCCchhHHHhh
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERL  546 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~---~~~~~~~~~~~-a~~G~~v~~~d~rGs~~~g~~~~~~~  546 (623)
                      ....+..++|.|....    +..+.|+||++|||.+...   ...+......+ .+.+.+|+.+|||=.           
T Consensus        70 ~~~~l~vRly~P~~~~----~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLA-----------  134 (336)
T KOG1515|consen   70 PFTNLPVRLYRPTSSS----SETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLA-----------  134 (336)
T ss_pred             CCCCeEEEEEcCCCCC----cccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccC-----------
Confidence            3456899999998732    1268999999999976544   33445555555 457999999999953           


Q ss_pred             ccCCccchHHHHHHHHHHHHhC----CCCCCCceEEEEcChHHHHHHHHh-c-C-----CCceeEEEecccCCCHHHhh
Q 006979          547 LGRWGIVDVNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAAL-A-F-----RDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       547 ~~~~g~~~~~D~~~~~~~l~~~----~~~d~~rv~i~G~S~GG~~~~~~~-~-~-----~~~f~a~v~~~g~~d~~~~~  614 (623)
                      .++.-...++|+.+|+.|+.++    ..+|++||+|+|-|+||.+|..++ + .     +-.+++.|.++|+....+..
T Consensus       135 PEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~  213 (336)
T KOG1515|consen  135 PEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRT  213 (336)
T ss_pred             CCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCC
Confidence            3333445689999999999886    348999999999999999998777 2 1     35789999999998765543

>COG2267 PldB Lysophospholipase [Lipid metabolism]

Probab=99.05  E-value=1e-09  Score=110.97  Aligned_cols=132  Identities=15%  Similarity=0.091  Sum_probs=95.9

Q ss_pred             EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhH
Q 006979          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF  542 (623)
Q Consensus       463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~  542 (623)
                      +-.+.+. +|..+....+.+..        .+..+||++||.  ......|...+..|+.+||.|+..|.||.|.+.+  
T Consensus        11 ~~~~~~~-d~~~~~~~~~~~~~--------~~~g~Vvl~HG~--~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r--   77 (298)
T COG2267          11 EGYFTGA-DGTRLRYRTWAAPE--------PPKGVVVLVHGL--GEHSGRYEELADDLAARGFDVYALDLRGHGRSPR--   77 (298)
T ss_pred             cceeecC-CCceEEEEeecCCC--------CCCcEEEEecCc--hHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCC--
Confidence            3445555 89899888887764        122799999998  4555567778999999999999999999877654  


Q ss_pred             HHhhccCCcc--chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          543 RERLLGRWGI--VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       543 ~~~~~~~~g~--~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                        ...+....  .-..|+.+.++.+.+.  .-..+++++||||||.+++..+ +++..++++|..+|...+.
T Consensus        78 --~~rg~~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~  145 (298)
T COG2267          78 --GQRGHVDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLG  145 (298)
T ss_pred             --CCcCCchhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCC
Confidence              11222211  1134444444444443  1246999999999999999999 8889999999999987765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.04  E-value=6.1e-08  Score=97.61  Aligned_cols=277  Identities=14%  Similarity=0.079  Sum_probs=172.6

Q ss_pred             CHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEE
Q 006979           80 TADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIF  159 (623)
Q Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f  159 (623)
                      +.|-+.+-...+..|... ++++||+...   +|-..||.-+.+ |...++-+.        +++|-.....-++.+|+|
T Consensus       217 tFeK~vdl~~~vS~PmIV-~~RvYFlsD~---eG~GnlYSvdld-GkDlrrHTn--------FtdYY~R~~nsDGkrIvF  283 (668)
T COG4946         217 TFEKFVDLDGNVSSPMIV-GERVYFLSDH---EGVGNLYSVDLD-GKDLRRHTN--------FTDYYPRNANSDGKRIVF  283 (668)
T ss_pred             ceeeeeecCCCcCCceEE-cceEEEEecc---cCccceEEeccC-CchhhhcCC--------chhccccccCCCCcEEEE
Confidence            344445445555566656 8999999755   366668887765 212233332        122211111112338999


Q ss_pred             EeCCCCcEEEEeCCCCCCCceecCCC-C-C---------CCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          160 SNYKDQRLYKHSIDSKDSSPLPITPD-Y-G---------EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       160 ~~~~~~~l~~~d~~~g~~~~~~Lt~~-~-~---------~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      ..  .|.||++|+++.  ..+.|.-+ + +         .+.....+++.. +|.++++|+.          ++.++++.
T Consensus       284 q~--~GdIylydP~td--~lekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSR----------GkaFi~~~  348 (668)
T COG4946         284 QN--AGDIYLYDPETD--SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSR----------GKAFIMRP  348 (668)
T ss_pred             ec--CCcEEEeCCCcC--cceeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEEec----------CcEEEECC
Confidence            84  556999999875  45554432 0 0         011112344443 6889999876          66888888


Q ss_pred             CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       229 ~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      ..+-   ..++..... +..-+++-|++.++.-..+       +..|-++|.+++   ..++...+.     +.+....-
T Consensus       349 ~~~~---~iqv~~~~~-VrY~r~~~~~e~~vigt~d-------gD~l~iyd~~~~---e~kr~e~~l-----g~I~av~v  409 (668)
T COG4946         349 WDGY---SIQVGKKGG-VRYRRIQVDPEGDVIGTND-------GDKLGIYDKDGG---EVKRIEKDL-----GNIEAVKV  409 (668)
T ss_pred             CCCe---eEEcCCCCc-eEEEEEccCCcceEEeccC-------CceEEEEecCCc---eEEEeeCCc-----cceEEEEE
Confidence            7776   555654433 3344677788766544322       345888898877   234443332     45677889


Q ss_pred             CCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEECC--eEEEEE
Q 006979          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG--RSYLGI  385 (623)
Q Consensus       309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g--~~~L~~  385 (623)
                      ++||+.+.+++.   ..+||.+|+++|+.+.+... ..-+....|++            +++++.+..- .|  .++|-+
T Consensus       410 s~dGK~~vvaNd---r~el~vididngnv~~idkS~~~lItdf~~~~------------nsr~iAYafP-~gy~tq~Ikl  473 (668)
T COG4946         410 SPDGKKVVVAND---RFELWVIDIDNGNVRLIDKSEYGLITDFDWHP------------NSRWIAYAFP-EGYYTQSIKL  473 (668)
T ss_pred             cCCCcEEEEEcC---ceEEEEEEecCCCeeEecccccceeEEEEEcC------------CceeEEEecC-cceeeeeEEE
Confidence            999995555543   56899999999999888753 33345556664            6666665543 44  467888


Q ss_pred             EeCCCCceeecccCCc-ceEee-eecCCEEEEEEec
Q 006979          386 LDDFGHSLSLLDIPFT-DIDNI-TLGNDCLFVEGAS  419 (623)
Q Consensus       386 ~d~~~~~~~~lt~~~~-~v~~~-~~~~~~~~~~~~s  419 (623)
                      +|.+++++-.+|.+.. ++.+. +++++.+||++..
T Consensus       474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~R  509 (668)
T COG4946         474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSAR  509 (668)
T ss_pred             EecCCCeEEEecCCcccccCcccCCCCcEEEEEecc
Confidence            9999999988888754 34443 8999999999863

>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3

Probab=99.04  E-value=1.1e-09  Score=105.81  Aligned_cols=113  Identities=21%  Similarity=0.190  Sum_probs=88.1

Q ss_pred             EEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHH
Q 006979          477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN  556 (623)
Q Consensus       477 ~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~  556 (623)
                      ..++.|+.       .+.+|+||+.||..  .....|....+.+++.||+|+.+|+....+           .-...+.+
T Consensus         6 l~v~~P~~-------~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~   65 (259)
T PF12740_consen    6 LLVYYPSS-------AGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVA   65 (259)
T ss_pred             eEEEecCC-------CCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHH
Confidence            45677876       67899999999984  333346778888999999999999665222           12234678


Q ss_pred             HHHHHHHHHHhC-----C---CCCCCceEEEEcChHHHHHHHHh-cC-----CCceeEEEecccCCC
Q 006979          557 DCCSCATFLVGS-----G---KADEKRLCITGGSAGGYTTLAAL-AF-----RDTFKAGASLYGVSI  609 (623)
Q Consensus       557 D~~~~~~~l~~~-----~---~~d~~rv~i~G~S~GG~~~~~~~-~~-----~~~f~a~v~~~g~~d  609 (623)
                      +..+.++|+.+.     +   .+|-+||+|+|||.||-++..++ .+     +..|++++.+.|+.-
T Consensus        66 ~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG  132 (259)
T PF12740_consen   66 SAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDG  132 (259)
T ss_pred             HHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccc
Confidence            888999998762     1   25889999999999999999887 55     458999999999874

1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.02  E-value=1.3e-07  Score=98.54  Aligned_cols=276  Identities=10%  Similarity=0.094  Sum_probs=148.2

Q ss_pred             cCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCC--ceEEEeCC--EEEEEe
Q 006979           87 ASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIFGD--TVIFSN  161 (623)
Q Consensus        87 ~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~--~~~~~s~d--~l~f~~  161 (623)
                      ....+..+.++| ++.||-+.....+.|....++.+.++| +... +       .++...|.  ...+++++  .++..+
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-~L~~-~-------~~~~~~g~~p~~i~~~~~g~~l~van  105 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-TLTL-L-------NSVPSGGSSPCHIAVDPDGRFLYVAN  105 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-EEEE-E-------EEEEESSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-eeEE-e-------eeeccCCCCcEEEEEecCCCEEEEEE
Confidence            455677888888 777777764432356666666654422 1111 1       11111222  23445444  677777


Q ss_pred             CCCCcEEEEeCCCCCCCceec---C-C---CCC---CCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979          162 YKDQRLYKHSIDSKDSSPLPI---T-P---DYG---EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (623)
Q Consensus       162 ~~~~~l~~~d~~~g~~~~~~L---t-~---~~~---~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g  231 (623)
                      ..++.+.+++++.. ......   . .   +..   ....+.-...++|||++++.... ..       ..|++++++..
T Consensus       106 y~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-G~-------D~v~~~~~~~~  176 (345)
T PF10282_consen  106 YGGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-GA-------DRVYVYDIDDD  176 (345)
T ss_dssp             TTTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-TT-------TEEEEEEE-TT
T ss_pred             ccCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-CC-------CEEEEEEEeCC
Confidence            78888888887642 122211   1 0   000   00112224679999998865432 21       45777776554


Q ss_pred             C--cccceec--ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC-CCceeeeEEEcCCCCCcc--ccCc
Q 006979          232 N--IQEPKVL--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTIV--ESPT  304 (623)
Q Consensus       232 ~--~~~~~~l--~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~  304 (623)
                      .  +.....+  ..+.. .....|+|||+++|.+. ..      ...|.+++++. .+.+.....+.-.+..+.  ....
T Consensus       177 ~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~-e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T PF10282_consen  177 TGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVN-EL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA  248 (345)
T ss_dssp             S-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEE-TT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred             CceEEEeeccccccCCC-CcEEEEcCCcCEEEEec-CC------CCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence            3  2111111  21211 22345999999877664 32      34588888873 333222222222110111  1356


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      ....+|||+.+|++++..+.-.++.+|..+++++.+...... +.     ..+.+.+.   ++++.|+++...++.-.+|
T Consensus       249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~-----~Pr~~~~s---~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GK-----FPRHFAFS---PDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SS-----SEEEEEE----TTSSEEEEEETTTTEEEEE
T ss_pred             eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CC-----CccEEEEe---CCCCEEEEEecCCCeEEEE
Confidence            778999999888888855555666776677777665422111 11     11344554   4888888888788888999


Q ss_pred             EEeCCCCceeecc
Q 006979          385 ILDDFGHSLSLLD  397 (623)
Q Consensus       385 ~~d~~~~~~~~lt  397 (623)
                      .+|.++|.++.+.
T Consensus       320 ~~d~~tG~l~~~~  332 (345)
T PF10282_consen  320 DIDPDTGKLTPVG  332 (345)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEeCCCCcEEEec
Confidence            9999999887654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK13616 lipoprotein LpqB; Provisional

Probab=99.02  E-value=4.8e-08  Score=107.23  Aligned_cols=171  Identities=8%  Similarity=0.000  Sum_probs=106.9

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC---
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM---  268 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~---  268 (623)
                      ...++.+||||++++|+....... ......||+++.. +.   .++++.+.. ...|+|||||++|+|+....+-.   
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~-~d~~s~Lwv~~~g-g~---~~~lt~g~~-~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGA-PDPASSLWVGPLG-GV---AVQVLEGHS-LTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCC-CCcceEEEEEeCC-Cc---ceeeecCCC-CCCceECCCCCceEEEecCcceEEEe
Confidence            456789999999999998532211 1245789999974 44   466766654 67899999999999886221100   


Q ss_pred             -CCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEE---EecCCCeEEEE---
Q 006979          269 -PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK---WIESNNEVLAI---  340 (623)
Q Consensus       269 -p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~---~d~~~~~~~~l---  340 (623)
                       .....+||+.+++++.   ...   ..+    ..+..++|||||+ ++|+..   +  +|+.   ...++|+ ..|   
T Consensus       425 ~~~~~gql~~~~vd~ge---~~~---~~~----g~Issl~wSpDG~RiA~i~~---g--~v~Va~Vvr~~~G~-~~l~~~  488 (591)
T PRK13616        425 RDPATGQLARTPVDASA---VAS---RVP----GPISELQLSRDGVRAAMIIG---G--KVYLAVVEQTEDGQ-YALTNP  488 (591)
T ss_pred             ccCCCceEEEEeccCch---hhh---ccC----CCcCeEEECCCCCEEEEEEC---C--EEEEEEEEeCCCCc-eeeccc
Confidence             0124567777776552   111   222    4578999999999 888773   3  4554   4444554 333   


Q ss_pred             ---eecccc-cccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeeccc
Q 006979          341 ---YSLDAE-FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI  398 (623)
Q Consensus       341 ---~~~~~~-~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~  398 (623)
                         .....+ .....|.             ++..|++.. .++...+|++++++...+.+..
T Consensus       489 ~~l~~~l~~~~~~l~W~-------------~~~~L~V~~-~~~~~~v~~v~vDG~~~~~~~~  536 (591)
T PRK13616        489 REVGPGLGDTAVSLDWR-------------TGDSLVVGR-SDPEHPVWYVNLDGSNSDALPS  536 (591)
T ss_pred             EEeecccCCccccceEe-------------cCCEEEEEe-cCCCCceEEEecCCccccccCC
Confidence               332222 2344555             455566554 4566779999998766555333

>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases

Probab=99.02  E-value=3.3e-10  Score=109.30  Aligned_cols=102  Identities=20%  Similarity=0.138  Sum_probs=75.2

Q ss_pred             EEEecCCCCCcccCcC-CHHhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC---CCCC
Q 006979          498 LVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKAD  572 (623)
Q Consensus       498 iv~~hGg~~~~~~~~~-~~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~---~~~d  572 (623)
                      ||++|||.+....... ......+++ +|++|+.+|||=...           ......++|+.++++|+.++   -.+|
T Consensus         1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d   69 (211)
T PF07859_consen    1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID   69 (211)
T ss_dssp             EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred             CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence            7899999765444332 345666665 999999999995332           22235689999999999987   2488


Q ss_pred             CCceEEEEcChHHHHHHHHh-cC--C--CceeEEEecccCCCH
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AF--R--DTFKAGASLYGVSIP  610 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~--~--~~f~a~v~~~g~~d~  610 (623)
                      ++||+|+|.|+||++++.++ ..  .  ..+++++..+|+.|+
T Consensus        70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~  112 (211)
T PF07859_consen   70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL  112 (211)
T ss_dssp             EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred             ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence            99999999999999999888 32  2  258999999999988

; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....

>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A

Probab=99.00  E-value=1.4e-09  Score=98.01  Aligned_cols=96  Identities=19%  Similarity=0.157  Sum_probs=73.7

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCce
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL  576 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv  576 (623)
                      +||++||...  ....+...++.|+++||.|+.+|+|+.+....              ..++..+++++.+.. .|+++|
T Consensus         1 ~vv~~HG~~~--~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~i   63 (145)
T PF12695_consen    1 VVVLLHGWGG--SRRDYQPLAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAGY-PDPDRI   63 (145)
T ss_dssp             EEEEECTTTT--TTHHHHHHHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHHH-CTCCEE
T ss_pred             CEEEECCCCC--CHHHHHHHHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhhc-CCCCcE
Confidence            5899999944  34456788999999999999999998665411              125555555553321 288999


Q ss_pred             EEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          577 CITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       577 ~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      +++|+|+||.+++.++ .+ ..++++|.+.|..+.
T Consensus        64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~~   97 (145)
T PF12695_consen   64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPDS   97 (145)
T ss_dssp             EEEEETHHHHHHHHHHHHS-TTESEEEEESESSGC
T ss_pred             EEEEEccCcHHHHHHhhhc-cceeEEEEecCccch
Confidence            9999999999999999 56 789999999996553

...

>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]

Probab=98.96  E-value=1.8e-09  Score=98.33  Aligned_cols=134  Identities=18%  Similarity=0.135  Sum_probs=102.7

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      .-+.+++.++ |..++++|+....         ...|+++++|+..+ ..........-++...+..|+.++|||-|.+.
T Consensus        53 pye~i~l~T~-D~vtL~a~~~~~E---------~S~pTlLyfh~NAG-NmGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~  121 (300)
T KOG4391|consen   53 PYERIELRTR-DKVTLDAYLMLSE---------SSRPTLLYFHANAG-NMGHRLPIARVFYVNLKMNVLIVSYRGYGKSE  121 (300)
T ss_pred             CceEEEEEcC-cceeEeeeeeccc---------CCCceEEEEccCCC-cccchhhHHHHHHHHcCceEEEEEeeccccCC
Confidence            4578899998 9999999998732         35799999998732 22223333445567889999999999955432


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      .+-.+   .  |  -.-|..++++||..++..|..+|.++|.|.||..++.++ .+.++..|+|...-+..+.
T Consensus       122 GspsE---~--G--L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp  187 (300)
T KOG4391|consen  122 GSPSE---E--G--LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIP  187 (300)
T ss_pred             CCccc---c--c--eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccch
Confidence            22111   1  1  246899999999999999999999999999999999988 7788999999887776663

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.94  E-value=8.3e-07  Score=91.96  Aligned_cols=257  Identities=13%  Similarity=0.084  Sum_probs=130.2

Q ss_pred             EEEeCC--EEEEEeCCCCcEEEEeCC-CCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          150 FRIFGD--TVIFSNYKDQRLYKHSID-SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       150 ~~~s~d--~l~f~~~~~~~l~~~d~~-~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      .+++++  .++.....++.|..++++ .+  ..+.+.... . ........++|+|++++......        +.|.++
T Consensus        40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g--~l~~~~~~~-~-~~~p~~i~~~~~g~~l~v~~~~~--------~~v~v~  107 (330)
T PRK11028         40 MVISPDKRHLYVGVRPEFRVLSYRIADDG--ALTFAAESP-L-PGSPTHISTDHQGRFLFSASYNA--------NCVSVS  107 (330)
T ss_pred             EEECCCCCEEEEEECCCCcEEEEEECCCC--ceEEeeeec-C-CCCceEEEECCCCCEEEEEEcCC--------CeEEEE
Confidence            444444  566665666778777765 23  222222110 0 11223577999999887765432        567788


Q ss_pred             EcCC-CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee---eEEEcCCCCCcccc
Q 006979          227 ALNG-QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK---RVCVAGFDPTIVES  302 (623)
Q Consensus       227 dl~~-g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~---~~~~~~~~~~~~~~  302 (623)
                      +++. +..........+........++|||++|+.....       ...|+++|++..+.+..   ........    ..
T Consensus       108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-------~~~v~v~d~~~~g~l~~~~~~~~~~~~g----~~  176 (330)
T PRK11028        108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-------EDRIRLFTLSDDGHLVAQEPAEVTTVEG----AG  176 (330)
T ss_pred             EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-------CCEEEEEEECCCCcccccCCCceecCCC----CC
Confidence            7763 3211111111121122334699999988765422       34589999976443211   00011111    34


Q ss_pred             CcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec---ccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~---~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                      +....|+|||+.+|+.+...+.-.+|.++..+++.+.+..-   ......+.|.   ..+.+.   |+++.+|...+..+
T Consensus       177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~i~~~---pdg~~lyv~~~~~~  250 (330)
T PRK11028        177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA---ADIHIT---PDGRHLYACDRTAS  250 (330)
T ss_pred             CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc---eeEEEC---CCCCEEEEecCCCC
Confidence            55789999999776776534554555555434554433211   1111222332   123343   37777777644455


Q ss_pred             eEEEEEEeCCCCceeecc---cCCc-ceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          380 RSYLGILDDFGHSLSLLD---IPFT-DIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       380 ~~~L~~~d~~~~~~~~lt---~~~~-~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      .-.++.++.+++..+.+.   .+.. .--.++++++++|+.... ...-.+|.++.+++.+
T Consensus       251 ~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~-~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        251 LISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK-SHHISVYEIDGETGLL  310 (330)
T ss_pred             eEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc-CCcEEEEEEcCCCCcE
Confidence            556666665554443222   1111 111337777777776532 2333466666555654

>PRK00870 haloalkane dehalogenase; Provisional

Probab=98.93  E-value=1.6e-08  Score=103.38  Aligned_cols=128  Identities=13%  Similarity=0.091  Sum_probs=83.3

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ....+++... +|..+... |...+       ....|.||++||.+.  ....|...+..|.++||.|+++|.||.|...
T Consensus        20 ~~~~~~~~~~-~~~~~~i~-y~~~G-------~~~~~~lvliHG~~~--~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~   88 (302)
T PRK00870         20 APHYVDVDDG-DGGPLRMH-YVDEG-------PADGPPVLLLHGEPS--WSYLYRKMIPILAAAGHRVIAPDLIGFGRSD   88 (302)
T ss_pred             CceeEeecCC-CCceEEEE-EEecC-------CCCCCEEEEECCCCC--chhhHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence            4556777664 55544422 32322       112367899999843  3345667788888889999999999966542


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                      ..     .. ......++..+.+..++++  .+.+++.++|||+||.+++.++ .+|+.++++|...+
T Consensus        89 ~~-----~~-~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~  148 (302)
T PRK00870         89 KP-----TR-REDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT  148 (302)
T ss_pred             CC-----CC-cccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence            21     00 0112234444444433333  2346899999999999999999 88999999998865

>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]

Probab=98.93  E-value=7.9e-09  Score=98.09  Aligned_cols=136  Identities=18%  Similarity=0.189  Sum_probs=100.3

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHc-CceEEEEECCCCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGY  538 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~-~G~~v~~~d~rGs~~~  538 (623)
                      ..+.+..++. .|..+.+.++.|..        ...++|++.||.  +............+.. ..+.|+.+||+|.|..
T Consensus        34 ~v~v~~~~t~-rgn~~~~~y~~~~~--------~~~~~lly~hGN--a~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S  102 (258)
T KOG1552|consen   34 FVEVFKVKTS-RGNEIVCMYVRPPE--------AAHPTLLYSHGN--AADLGQMVELFKELSIFLNCNVVSYDYSGYGRS  102 (258)
T ss_pred             ccceEEeecC-CCCEEEEEEEcCcc--------ccceEEEEcCCc--ccchHHHHHHHHHHhhcccceEEEEeccccccc
Confidence            3344555555 67778888887753        346899999997  3332222222222333 4899999999998776


Q ss_pred             chhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhhh
Q 006979          539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~~  616 (623)
                      +....+.       ...+|+.++.+||.+... .+++|+++|+|+|...++.++ +.|  .+|+|..+|+.+..+.+-.
T Consensus       103 ~G~psE~-------n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~  171 (258)
T KOG1552|consen  103 SGKPSER-------NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFP  171 (258)
T ss_pred             CCCcccc-------cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhcc
Confidence            5544331       458999999999999865 679999999999999999999 666  8999999999998876543

>COG4188 Predicted dienelactone hydrolase [General function prediction only]

Probab=98.92  E-value=4.4e-09  Score=105.20  Aligned_cols=131  Identities=19%  Similarity=0.118  Sum_probs=91.7

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~  541 (623)
                      ..+++.....+.++..+++.|....... ...+.|+||+.||.  +.....|.+.++.+++.||+|..+++.|+..-+..
T Consensus        39 ~~i~~~~~~r~~~~~v~~~~p~~~~~~~-~~~~~PlvvlshG~--Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~  115 (365)
T COG4188          39 VTITLNDPQRDRERPVDLRLPQGGTGTV-ALYLLPLVVLSHGS--GSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGAP  115 (365)
T ss_pred             EEEeccCcccCCccccceeccCCCcccc-ccCcCCeEEecCCC--CCCccchhhhHHHHhhCceEEEeccCCCcccccCC
Confidence            3455554423667888889887622000 01489999999998  55577888999999999999999999996532221


Q ss_pred             HHHhhccCC----ccchHHHHHHHHHHHHhC---C----CCCCCceEEEEcChHHHHHHHHh-cCC
Q 006979          542 FRERLLGRW----GIVDVNDCCSCATFLVGS---G----KADEKRLCITGGSAGGYTTLAAL-AFR  595 (623)
Q Consensus       542 ~~~~~~~~~----g~~~~~D~~~~~~~l~~~---~----~~d~~rv~i~G~S~GG~~~~~~~-~~~  595 (623)
                      -.......+    ......|+...+++|.+.   +    .+|+.||+++|||+|||++|.++ .+.
T Consensus       116 ~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~  181 (365)
T COG4188         116 AAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL  181 (365)
T ss_pred             hhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence            111110001    112357888888988876   4    58999999999999999999988 553

>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]

Probab=98.89  E-value=2.6e-09  Score=110.28  Aligned_cols=128  Identities=23%  Similarity=0.318  Sum_probs=90.0

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcCc-eEEEEECCCC-CCCC--chhHH--Hh
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRG-WAFVDVNYGG-STGY--GREFR--ER  545 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G-~~v~~~d~rG-s~~~--g~~~~--~~  545 (623)
                      ..++.-++.|..      +.++.|+||++|||....... .....-+.|+++| ++|+.+|||= --||  ...+.  +.
T Consensus        78 DCL~LNIwaP~~------~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~  151 (491)
T COG2272          78 DCLYLNIWAPEV------PAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDA  151 (491)
T ss_pred             cceeEEeeccCC------CCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhcccccc
Confidence            357888888972      157789999999995322211 2224456789988 9999999993 2222  11111  11


Q ss_pred             hccCCccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHhcCC---CceeEEEecccCCC
Q 006979          546 LLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAFR---DTFKAGASLYGVSI  609 (623)
Q Consensus       546 ~~~~~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~~~~---~~f~a~v~~~g~~d  609 (623)
                      ...+   .-..|++.|++|+.++   ---||++|-|+|.|+|++.++.++..|   .+|+-+|+.+|..-
T Consensus       152 ~~~n---~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~  218 (491)
T COG2272         152 FASN---LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS  218 (491)
T ss_pred             cccc---ccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence            1112   2378999999999875   226999999999999999999888654   48888888888764

>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A

Probab=98.87  E-value=9.5e-09  Score=99.09  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=73.7

Q ss_pred             EEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceE
Q 006979          498 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC  577 (623)
Q Consensus       498 iv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~  577 (623)
                      ||++||.+...  ..|...+..| ++||.|+.+|+||.|......      .......++..+.+..++++  +..+++.
T Consensus         1 vv~~hG~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~------~~~~~~~~~~~~~l~~~l~~--~~~~~~~   69 (228)
T PF12697_consen    1 VVFLHGFGGSS--ESWDPLAEAL-ARGYRVIAFDLPGHGRSDPPP------DYSPYSIEDYAEDLAELLDA--LGIKKVI   69 (228)
T ss_dssp             EEEE-STTTTG--GGGHHHHHHH-HTTSEEEEEECTTSTTSSSHS------SGSGGSHHHHHHHHHHHHHH--TTTSSEE
T ss_pred             eEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEecCCcccccccc------ccCCcchhhhhhhhhhcccc--ccccccc
Confidence            78999995443  5677778888 489999999999976544321      11223344444444444333  1227999


Q ss_pred             EEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          578 ITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       578 i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      ++|||+||.+++.++ .+|+.++++|...|.....
T Consensus        70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~  104 (228)
T PF12697_consen   70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLP  104 (228)
T ss_dssp             EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHH
T ss_pred             ccccccccccccccccccccccccceeeccccccc
Confidence            999999999999999 7899999999999998754

...

>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A

Probab=98.86  E-value=3.5e-09  Score=110.36  Aligned_cols=115  Identities=23%  Similarity=0.191  Sum_probs=69.2

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC------chhH-HHh------hc-------c---
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY------GREF-RER------LL-------G---  548 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~------g~~~-~~~------~~-------~---  548 (623)
                      .+++|+|||.||-  +.....++..+..||++||+|+++|+|.....      ...- ...      ..       .   
T Consensus        97 ~~~~PvvIFSHGl--gg~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T PF03403_consen   97 PGKFPVVIFSHGL--GGSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDP  174 (379)
T ss_dssp             SS-EEEEEEE--T--T--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----G
T ss_pred             CCCCCEEEEeCCC--CcchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccc
Confidence            3679999999998  55666788999999999999999999953321      1110 000      00       0   


Q ss_pred             --------CCccchHHHHHHHHHHHHh--------------------CCCCCCCceEEEEcChHHHHHHHHhcCCCceeE
Q 006979          549 --------RWGIVDVNDCCSCATFLVG--------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKA  600 (623)
Q Consensus       549 --------~~g~~~~~D~~~~~~~l~~--------------------~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a  600 (623)
                              .+-..-..|+..+++.|.+                    ++.+|.+||+++|||+||.+++.++....+|+|
T Consensus       175 ~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d~r~~~  254 (379)
T PF03403_consen  175 EEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQDTRFKA  254 (379)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-TT--E
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhccCcce
Confidence                    0000114567777777753                    145788999999999999999999966688999


Q ss_pred             EEecccCC
Q 006979          601 GASLYGVS  608 (623)
Q Consensus       601 ~v~~~g~~  608 (623)
                      +|...|..
T Consensus       255 ~I~LD~W~  262 (379)
T PF03403_consen  255 GILLDPWM  262 (379)
T ss_dssp             EEEES---
T ss_pred             EEEeCCcc
Confidence            99987753

>PLN02872 triacylglycerol lipase

Probab=98.85  E-value=5.1e-09  Score=109.77  Aligned_cols=145  Identities=19%  Similarity=0.148  Sum_probs=97.4

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC----CHHhHHHHcCceEEEEECCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGG  534 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~----~~~~~~~a~~G~~v~~~d~rG  534 (623)
                      -..|+..+++. ||..+...-+.+.+.. .  ...+.|.||++||...+......    ...+..|+++||.|+.+|.||
T Consensus        42 y~~e~h~v~T~-DGy~L~l~ri~~~~~~-~--~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG  117 (395)
T PLN02872         42 YSCTEHTIQTK-DGYLLALQRVSSRNPR-L--GSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRG  117 (395)
T ss_pred             CCceEEEEECC-CCcEEEEEEcCCCCCC-C--CCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccc
Confidence            36788888888 9998887666443211 0  02335789999998544433211    235556899999999999999


Q ss_pred             CCC-CchhHHHhh-c----cCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCC---ceeEEEecc
Q 006979          535 STG-YGREFRERL-L----GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLY  605 (623)
Q Consensus       535 s~~-~g~~~~~~~-~----~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~---~f~a~v~~~  605 (623)
                      .+. +|....... .    ..|......|+.++++++.+..   .+++.++|||+||.+++.++.+|+   .++++++.+
T Consensus       118 ~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~~~p~~~~~v~~~~~l~  194 (395)
T PLN02872        118 TRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAALTQPNVVEMVEAAALLC  194 (395)
T ss_pred             cccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHhhChHHHHHHHHHHHhc
Confidence            653 232211111 1    1122233479999999998653   479999999999999997767765   678888888


Q ss_pred             cCCCH
Q 006979          606 GVSIP  610 (623)
Q Consensus       606 g~~d~  610 (623)
                      |+.-+
T Consensus       195 P~~~~  199 (395)
T PLN02872        195 PISYL  199 (395)
T ss_pred             chhhh
Confidence            87543

>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase

Probab=98.85  E-value=1.3e-08  Score=102.90  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=69.7

Q ss_pred             CEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      |.||++||.+...... .+......+++.||.|+++|+||.|.......   .........+|+.+.++.+      +.+
T Consensus        31 ~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~---~~~~~~~~~~~l~~~l~~l------~~~  101 (282)
T TIGR03343        31 EAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVM---DEQRGLVNARAVKGLMDAL------DIE  101 (282)
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcC---cccccchhHHHHHHHHHHc------CCC
Confidence            5689999974333211 11123456778899999999999765432110   0111112345655555554      457


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ++.++|||+||++++.++ .+|++++++|+..|.
T Consensus       102 ~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~  135 (282)
T TIGR03343       102 KAHLVGNSMGGATALNFALEYPDRIGKLILMGPG  135 (282)
T ss_pred             CeeEEEECchHHHHHHHHHhChHhhceEEEECCC
Confidence            999999999999999998 789999999998764

Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.

>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae

Probab=98.84  E-value=2.8e-09  Score=105.84  Aligned_cols=135  Identities=20%  Similarity=0.258  Sum_probs=86.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCC-CCCcccCcCCHHhHHHHcCc----eEEEEECCCCCCCCchhHHH-
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRG----WAFVDVNYGGSTGYGREFRE-  544 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg-~~~~~~~~~~~~~~~~a~~G----~~v~~~d~rGs~~~g~~~~~-  544 (623)
                      -|.....++|.|.+  |..  .+++|+|++.||. .+... .......+.+...|    .+++.++..+.......|.. 
T Consensus         4 Lg~~~~~~VylP~~--y~~--~~~~PvlylldG~~~~~~~-~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~   78 (251)
T PF00756_consen    4 LGRDRRVWVYLPPG--YDP--SKPYPVLYLLDGQSGWFRN-GNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLP   78 (251)
T ss_dssp             TTEEEEEEEEECTT--GGT--TTTEEEEEEESHTTHHHHH-HHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSS
T ss_pred             cCCeEEEEEEECCC--CCC--CCCCEEEEEccCCcccccc-chHHHHHHHHHHhCCCCceEEEEEecccccccccccccc
Confidence            47788999999988  533  8899999999995 11110 01112233334444    55565555443311111110 


Q ss_pred             -----hhccCCccchHHHHH--HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          545 -----RLLGRWGIVDVNDCC--SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       545 -----~~~~~~g~~~~~D~~--~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                           ......+...+++.+  +.+.++.++-.+++++.+|+|+|+||+.++.++ +||+.|.++++++|..+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~  152 (251)
T PF00756_consen   79 AGSSRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDP  152 (251)
T ss_dssp             BCTTCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESET
T ss_pred             cccccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccc
Confidence                 011112222334433  667788887777777799999999999999999 999999999999988554

; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....

>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]

Probab=98.83  E-value=3.1e-08  Score=97.26  Aligned_cols=137  Identities=19%  Similarity=0.146  Sum_probs=96.3

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..|.+.++.  .|.....|...|.+        .+.|+||.+||-.++...+........+.++||.|+++|.||+++.-
T Consensus        50 ~re~v~~pd--g~~~~ldw~~~p~~--------~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~  119 (345)
T COG0429          50 TRERLETPD--GGFIDLDWSEDPRA--------AKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEA  119 (345)
T ss_pred             ceEEEEcCC--CCEEEEeeccCccc--------cCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCc
Confidence            334444433  34555567666654        45599999999866666665556778888999999999999987643


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHH-HHHHHHhcC--CCceeEEEecccCCCHHH
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG-YTTLAALAF--RDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG-~~~~~~~~~--~~~f~a~v~~~g~~d~~~  612 (623)
                      ..    ...-+-..+.+|+..+++++.+++  -+.++.++|+|+|| .++.+++..  .-...|++..+-+.|+..
T Consensus       120 n~----~p~~yh~G~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~  189 (345)
T COG0429         120 NT----SPRLYHSGETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEA  189 (345)
T ss_pred             cc----CcceecccchhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHH
Confidence            32    112222334699999999999864  26799999999999 666666633  335677888877778743

>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit

Probab=98.81  E-value=3.5e-08  Score=103.00  Aligned_cols=134  Identities=13%  Similarity=0.102  Sum_probs=88.2

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc---cCcCCHHhHHHHcCceEEEEECCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~---~~~~~~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      +|..+.+..  +.  +..+.|.|....     ..+.| ||++||-.....   .......+.+|+++||.|+.+|+||.+
T Consensus        37 ~~~~~v~~~--~~--~~l~~~~~~~~~-----~~~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g  106 (350)
T TIGR01836        37 TPKEVVYRE--DK--VVLYRYTPVKDN-----THKTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPD  106 (350)
T ss_pred             CCCceEEEc--Cc--EEEEEecCCCCc-----CCCCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCC
Confidence            445555544  34  344445565311     22345 777887421111   112356899999999999999999854


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      .   .-.   ...+.....+|+.++++++.++.  ..++|.++|||+||.+++.++ .+++.++++|..+++.|+.
T Consensus       107 ~---s~~---~~~~~d~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~  174 (350)
T TIGR01836       107 R---ADR---YLTLDDYINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFE  174 (350)
T ss_pred             H---HHh---cCCHHHHHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccC
Confidence            2   111   11111222356888999998763  346999999999999999887 7899999999999988753

This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.

>PRK11460 putative hydrolase; Provisional

Probab=98.80  E-value=2e-08  Score=98.14  Aligned_cols=113  Identities=16%  Similarity=0.098  Sum_probs=76.9

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCC----CCchhHHHhhccCCccc-------hHHHHHH
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST----GYGREFRERLLGRWGIV-------DVNDCCS  560 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~----~~g~~~~~~~~~~~g~~-------~~~D~~~  560 (623)
                      ....|+||++||.+  .....+...+..|+.+++.+..+.++|..    +.|+.|... .+.....       ..+.+.+
T Consensus        13 ~~~~~~vIlLHG~G--~~~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~-~~~~~~~~~~~~~~~~~~l~~   89 (232)
T PRK11460         13 KPAQQLLLLFHGVG--DNPVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSV-QGITEDNRQARVAAIMPTFIE   89 (232)
T ss_pred             CCCCcEEEEEeCCC--CChHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccC-CCCCccchHHHHHHHHHHHHH
Confidence            34568999999983  34446677888888877666666666532    123444321 1111111       1233445


Q ss_pred             HHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          561 CATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       561 ~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      .++++.++..++++||+++|+|+||.+++.++ .+|++++++|+++|.
T Consensus        90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~  137 (232)
T PRK11460         90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGR  137 (232)
T ss_pred             HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccc
Confidence            66777777678999999999999999999988 789989988888775

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.80  E-value=3.5e-06  Score=90.21  Aligned_cols=216  Identities=10%  Similarity=0.018  Sum_probs=130.3

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC---C
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM---P  269 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~---p  269 (623)
                      .....+||||++++|.....+.    ....|+++|+++|+.  +........+ ....|++||+.++|+..+....   .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~----e~~~l~v~Dl~tg~~--l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGS----EWYTLRVFDLETGKF--LPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTS----SEEEEEEEETTTTEE--EEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred             eeeeeECCCCCEEEEEecCCCC----ceEEEEEEECCCCcC--cCCccccccc-ceEEEeCCCCEEEEEEeCcccccccC
Confidence            3467899999999998776543    247899999999862  1111122222 2278999999999999877532   0


Q ss_pred             CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC-----eEEEEeec
Q 006979          270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN-----EVLAIYSL  343 (623)
Q Consensus       270 ~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~-----~~~~l~~~  343 (623)
                      ....+||+..+.+... ....++.+.+..  .....+.+++||+ +++.+........+|.++...+     +.+.|.+.
T Consensus       199 ~~~~~v~~~~~gt~~~-~d~lvfe~~~~~--~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~  275 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQS-EDELVFEEPDEP--FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR  275 (414)
T ss_dssp             GCCEEEEEEETTS-GG-G-EEEEC-TTCT--TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred             CCCcEEEEEECCCChH-hCeeEEeecCCC--cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence            0145799998876632 123455544422  1134678899999 5544554222378999998775     56777653


Q ss_pred             ccccccccccccCcceeEEeecCCCCEEEEEEEECC-eEEEEEEeCCCCc---ee-ecccCCc--ceEeeeecCCEEEEE
Q 006979          344 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDDFGHS---LS-LLDIPFT--DIDNITLGNDCLFVE  416 (623)
Q Consensus       344 ~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-~~~L~~~d~~~~~---~~-~lt~~~~--~v~~~~~~~~~~~~~  416 (623)
                      .....         .+.-.    .++.+|+.++.+. ..+|+.++++...   ++ .+..+..  .+..+...++.+++.
T Consensus       276 ~~~~~---------~~v~~----~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~  342 (414)
T PF02897_consen  276 EDGVE---------YYVDH----HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS  342 (414)
T ss_dssp             SSS-E---------EEEEE----ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE
T ss_pred             CCceE---------EEEEc----cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE
Confidence            21111         01111    4667777776543 5689999988765   33 3433333  355666778888777


Q ss_pred             EecCCCCCeEEEEEcC
Q 006979          417 GASGVEPSSVAKVTLD  432 (623)
Q Consensus       417 ~~s~~~~~~ly~~~l~  432 (623)
                      ..... .++|.++++.
T Consensus       343 ~~~~~-~~~l~v~~~~  357 (414)
T PF02897_consen  343 YRENG-SSRLRVYDLD  357 (414)
T ss_dssp             EEETT-EEEEEEEETT
T ss_pred             EEECC-ccEEEEEECC
Confidence            65433 4589999988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase

Probab=98.79  E-value=2.5e-08  Score=97.74  Aligned_cols=102  Identities=15%  Similarity=0.136  Sum_probs=73.2

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHH-HHHHHhCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~-~~~l~~~~~~d~~  574 (623)
                      |.||++||.+.  ....|......|+ +||.|+.+|+||.|.....      ......+.+++... +..+.+.  .+.+
T Consensus         2 ~~vv~~hG~~~--~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~   70 (251)
T TIGR03695         2 PVLVFLHGFLG--SGADWQALIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGIE   70 (251)
T ss_pred             CEEEEEcCCCC--chhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCCC
Confidence            67999999843  3335667777887 8999999999996654221      11112334555544 5555443  2457


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.++|||+||++++.++ .+|+.+++++...+..
T Consensus        71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~  105 (251)
T TIGR03695        71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSP  105 (251)
T ss_pred             eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCC
Confidence            999999999999999998 7899999999887654

This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.

>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases

Probab=98.79  E-value=2.7e-09  Score=118.29  Aligned_cols=127  Identities=21%  Similarity=0.214  Sum_probs=81.6

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC--cCCHHhHHHHcCceEEEEECCCC-CCCCchhHHHhh-cc
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGG-STGYGREFRERL-LG  548 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~--~~~~~~~~~a~~G~~v~~~d~rG-s~~~g~~~~~~~-~~  548 (623)
                      ..++.-+|.|.+..    ...++|++|++|||.......  ........+++++++|+.+|||= .-|+-..-.... .+
T Consensus       107 DCL~LnI~~P~~~~----~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~g  182 (535)
T PF00135_consen  107 DCLYLNIYTPSNAS----SNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSG  182 (535)
T ss_dssp             ---EEEEEEETSSS----STTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSHBS
T ss_pred             hHHHHhhhhccccc----cccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccCch
Confidence            35888889998732    133789999999996443333  22334556778999999999992 111100000001 23


Q ss_pred             CCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-c--CCCceeEEEeccc
Q 006979          549 RWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-A--FRDTFKAGASLYG  606 (623)
Q Consensus       549 ~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~--~~~~f~a~v~~~g  606 (623)
                      ++   -..|++.|++|+.++-   --||+||-|+|+|+||..+..++ .  ...+|+.+|+.+|
T Consensus       183 N~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG  243 (535)
T PF00135_consen  183 NY---GLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSG  243 (535)
T ss_dssp             TH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES-
T ss_pred             hh---hhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeecccccccccccccccc
Confidence            44   4789999999998852   26999999999999999999887 3  2569999999999

Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.77  E-value=1.6e-05  Score=82.34  Aligned_cols=219  Identities=11%  Similarity=0.047  Sum_probs=115.1

Q ss_pred             EEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          150 FRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       150 ~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      .+++++  .++.....++.|.+++++..+...+.+.....  ...-....++|||++++......        +.|+++|
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~--------~~v~v~d  154 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLKE--------DRIRLFT  154 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCCC--------CEEEEEE
Confidence            444444  56666666777888887632011111111000  01112356899999887655432        5688888


Q ss_pred             cCC-CCccc----ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC-CceeeeEEEcCCCCC--c
Q 006979          228 LNG-QNIQE----PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPT--I  299 (623)
Q Consensus       228 l~~-g~~~~----~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~-~~~~~~~~~~~~~~~--~  299 (623)
                      +++ +....    ...+..+ .......|+|||++|+.....       ...|.+++++.. +.+.....+...+..  .
T Consensus       155 ~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~  226 (330)
T PRK11028        155 LSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNEL-------NSSVDVWQLKDPHGEIECVQTLDMMPADFSD  226 (330)
T ss_pred             ECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecC-------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence            876 33110    0111122 222346799999988766421       345888888743 222111111111100  0


Q ss_pred             cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                      ........++|||+.+|++++..+...++.++.+++..+.+.....  +     .....+.+.   ++++.||.+...++
T Consensus       227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~-----~~p~~~~~~---~dg~~l~va~~~~~  296 (330)
T PRK11028        227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--E-----TQPRGFNID---HSGKYLIAAGQKSH  296 (330)
T ss_pred             CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--c-----ccCCceEEC---CCCCEEEEEEccCC
Confidence            0122346789999977777764455566666555444333221110  1     012234444   38888888776677


Q ss_pred             eEEEEEEeCCCCceeec
Q 006979          380 RSYLGILDDFGHSLSLL  396 (623)
Q Consensus       380 ~~~L~~~d~~~~~~~~l  396 (623)
                      .-.+|.+|.+++.++.+
T Consensus       297 ~v~v~~~~~~~g~l~~~  313 (330)
T PRK11028        297 HISVYEIDGETGLLTEL  313 (330)
T ss_pred             cEEEEEEcCCCCcEEEc
Confidence            78888888777766544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.77  E-value=8.2e-07  Score=87.83  Aligned_cols=218  Identities=14%  Similarity=0.122  Sum_probs=124.9

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeC-CCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFD-PRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~s-PdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~  232 (623)
                      .+.++|++...++||+++++++  ..+.+...    .  .....++ ++|+ +++...          ..+.++|+.+++
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~--~~~~~~~~----~--~~G~~~~~~~g~-l~v~~~----------~~~~~~d~~~g~   71 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTG--EVEVIDLP----G--PNGMAFDRPDGR-LYVADS----------GGIAVVDPDTGK   71 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTT--EEEEEESS----S--EEEEEEECTTSE-EEEEET----------TCEEEEETTTTE
T ss_pred             CCEEEEEEcCCCEEEEEECCCC--eEEEEecC----C--CceEEEEccCCE-EEEEEc----------CceEEEecCCCc
Confidence            4589999988899999999876  44444432    1  3345566 6764 444333          235666999887


Q ss_pred             cccceecccC---C---CcccceeeCCCCCEEEEEEecCCCCCCCc--eEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979          233 IQEPKVLVSG---S---DFYAFPRMDPRGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       233 ~~~~~~l~~~---~---~~~~~p~wSPDG~~la~~~~~~~~~p~~~--~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  304 (623)
                         .+.+...   .   ...+...++|||+ |++........ ...  ..||+++.+ +   ....+..+.     ....
T Consensus        72 ---~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~-~~~~~g~v~~~~~~-~---~~~~~~~~~-----~~pN  137 (246)
T PF08450_consen   72 ---VTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGA-SGIDPGSVYRIDPD-G---KVTVVADGL-----GFPN  137 (246)
T ss_dssp             ---EEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCT-TCGGSEEEEEEETT-S---EEEEEEEEE-----SSEE
T ss_pred             ---EEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcc-ccccccceEEECCC-C---eEEEEecCc-----cccc
Confidence               4544332   2   2245567999998 77776443221 112  679999887 3   133333332     3456


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEEEecCC--CeE---EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHKWIESN--NEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~--~~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                      ...|+|||+.+|+++.  ...+|++++++.  .+.   +.+.......+.      .+.+.+-    ..+.||++..  +
T Consensus       138 Gi~~s~dg~~lyv~ds--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~------pDG~~vD----~~G~l~va~~--~  203 (246)
T PF08450_consen  138 GIAFSPDGKTLYVADS--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGY------PDGLAVD----SDGNLWVADW--G  203 (246)
T ss_dssp             EEEEETTSSEEEEEET--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE------EEEEEEB----TTS-EEEEEE--T
T ss_pred             ceEECCcchheeeccc--ccceeEEEeccccccceeeeeeEEEcCCCCcC------CCcceEc----CCCCEEEEEc--C
Confidence            8999999996666665  444688888753  311   222221111111      1334443    3445666543  4


Q ss_pred             eEEEEEEeCCCCceeecccCCcceEee---eecCCEEEEEEe
Q 006979          380 RSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGA  418 (623)
Q Consensus       380 ~~~L~~~d~~~~~~~~lt~~~~~v~~~---~~~~~~~~~~~~  418 (623)
                      ..+|+++++++..+..+..+......+   -++.+++|++.+
T Consensus       204 ~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  204 GGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             TTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence            457889999976677777774444444   245667776653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02211 methyl indole-3-acetate methyltransferase

Probab=98.76  E-value=4.9e-08  Score=98.06  Aligned_cols=104  Identities=14%  Similarity=0.184  Sum_probs=72.3

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHH-HHHhCCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKA  571 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~  571 (623)
                      +..|.||++||...  ....|......|.++||.|+.+|+||.|.....     .  -.....++....+. ++.+.+  
T Consensus        16 ~~~p~vvliHG~~~--~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~-----~--~~~~~~~~~~~~l~~~i~~l~--   84 (273)
T PLN02211         16 RQPPHFVLIHGISG--GSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSD-----A--DSVTTFDEYNKPLIDFLSSLP--   84 (273)
T ss_pred             CCCCeEEEECCCCC--CcCcHHHHHHHHHhCCCEEEEecccCCCCCCCC-----c--ccCCCHHHHHHHHHHHHHhcC--
Confidence            34588999999843  334667778888889999999999996542110     0  01123444443333 333332  


Q ss_pred             CCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +.+++.++||||||.+++.++ .+|++++++|...+.
T Consensus        85 ~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~  121 (273)
T PLN02211         85 ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT  121 (273)
T ss_pred             CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence            237999999999999999888 789999999988553

>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily

Probab=98.76  E-value=7e-08  Score=97.06  Aligned_cols=107  Identities=12%  Similarity=0.037  Sum_probs=71.8

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|.||++||++++.. ..+......+.+.||.|+.+|+||.|.....     .........++..+.+..+.++  .+.+
T Consensus        25 ~~~vl~~hG~~g~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~   96 (288)
T TIGR01250        25 KIKLLLLHGGPGMSH-EYLENLRELLKEEGREVIMYDQLGCGYSDQP-----DDSDELWTIDYFVDELEEVREK--LGLD   96 (288)
T ss_pred             CCeEEEEcCCCCccH-HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCC-----CcccccccHHHHHHHHHHHHHH--cCCC
Confidence            467888999865432 2333445555556999999999996653221     0000012345555555555554  2346


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ++.++|||+||.+++.++ .+|+.++++|...++..
T Consensus        97 ~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~  132 (288)
T TIGR01250        97 KFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDS  132 (288)
T ss_pred             cEEEEEeehHHHHHHHHHHhCccccceeeEeccccc
Confidence            799999999999999988 88999999998877643

This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.76  E-value=9.1e-06  Score=83.14  Aligned_cols=243  Identities=10%  Similarity=0.059  Sum_probs=125.2

Q ss_pred             EEEEEeC---------CCCcEEEEeCCCCCCCceecCCCCCCCC----eeecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 006979          156 TVIFSNY---------KDQRLYKHSIDSKDSSPLPITPDYGEPL----VSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (623)
Q Consensus       156 ~l~f~~~---------~~~~l~~~d~~~g~~~~~~Lt~~~~~~~----~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~  222 (623)
                      .+|....         .+..|-++|+.+. .....|.-+. .|.    ..-..+.+||||+++++..++.       .+.
T Consensus        59 ~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~-~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-------~~~  129 (352)
T TIGR02658        59 FFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIELPE-GPRFLVGTYPWMTSLTPDNKTLLFYQFSP-------SPA  129 (352)
T ss_pred             EEEEEeccccccccCCCCCEEEEEECccC-cEEeEEccCC-CchhhccCccceEEECCCCCEEEEecCCC-------CCE
Confidence            5666555         4566999999886 2333444321 111    1123578999999887765542       267


Q ss_pred             EEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC-CCCceEEEEEEecCCCc--eeeeEEEcCCCCCc
Q 006979          223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM-PWDKAELWVGYISENGD--VYKRVCVAGFDPTI  299 (623)
Q Consensus       223 L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~-p~~~~~L~v~d~~~~~~--~~~~~~~~~~~~~~  299 (623)
                      +-++|+.+++.  +..+.-           ||++.++-.. +...| -+....+..+.+++.+.  .....++.+.+ + 
T Consensus       130 V~VvD~~~~kv--v~ei~v-----------p~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~-~-  193 (352)
T TIGR02658       130 VGVVDLEGKAF--VRMMDV-----------PDCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED-E-  193 (352)
T ss_pred             EEEEECCCCcE--EEEEeC-----------CCCcEEEEec-CCccEEEeecCceEEEEecCCCceEEeeeeeecCCc-c-
Confidence            99999999873  222322           3333222111 11110 00001122222222221  11122222211 1 


Q ss_pred             cccCcCceeCC-CCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec---ccccccccccccCc-ceeEEeecCCCCEEEEE
Q 006979          300 VESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGIN-SYEIIQSHGEKNLIACS  374 (623)
Q Consensus       300 ~~~~~~~~ws~-DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~---~~~~~~~~w~~~~~-~~~~l~~s~~~~~l~~~  374 (623)
                       .-...|.+++ ||+.+|++..    ..++.+|+.+.+......-   ........|.++.- .+.+   +++++++|+.
T Consensus       194 -~v~~rP~~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~---~~dg~~lyV~  265 (352)
T TIGR02658       194 -YLINHPAYSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY---HRARDRIYLL  265 (352)
T ss_pred             -ccccCCceEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE---cCCCCEEEEE
Confidence             2223555566 8888888876    5788888766543332211   11111225665432 2333   3488888885


Q ss_pred             EE-------ECCeEEEEEEeCCCCcee-ecccCCcceEe--eeecCC-EEEEEEecCCCCCeEEEEEcCCCc
Q 006979          375 YR-------QNGRSYLGILDDFGHSLS-LLDIPFTDIDN--ITLGND-CLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       375 ~~-------~~g~~~L~~~d~~~~~~~-~lt~~~~~v~~--~~~~~~-~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ..       .++..+++.+|..+++.. ++..+.. ..+  ++++++ .+|.+...   ...|..+|.++++
T Consensus       266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-~~~iavS~Dgkp~lyvtn~~---s~~VsViD~~t~k  333 (352)
T TIGR02658       266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE-IDSINVSQDAKPLLYALSTG---DKTLYIFDAETGK  333 (352)
T ss_pred             ecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc-eeeEEECCCCCeEEEEeCCC---CCcEEEEECcCCe
Confidence            43       223468999999888764 4554432 223  378888 54444322   2458899988875

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase

Probab=98.75  E-value=2.3e-08  Score=98.11  Aligned_cols=101  Identities=16%  Similarity=0.081  Sum_probs=70.6

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      ..|+||++||.+..  ...|...++.+. +||.|+.+|+||.|.....        ......++..+.+..+++.  .+.
T Consensus        12 ~~~~li~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~--------~~~~~~~~~~~~~~~~i~~--~~~   78 (251)
T TIGR02427        12 GAPVLVFINSLGTD--LRMWDPVLPALT-PDFRVLRYDKRGHGLSDAP--------EGPYSIEDLADDVLALLDH--LGI   78 (251)
T ss_pred             CCCeEEEEcCcccc--hhhHHHHHHHhh-cccEEEEecCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHH--hCC
Confidence            45899999997433  334555666664 6899999999997654221        1122455555555554443  234


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +++.++|||+||++++.++ .+|+.++++|...+.
T Consensus        79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~  113 (251)
T TIGR02427        79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTA  113 (251)
T ss_pred             CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCc
Confidence            6899999999999999888 778999988877654

Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.

>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A)

Probab=98.73  E-value=4.2e-08  Score=101.39  Aligned_cols=132  Identities=20%  Similarity=0.171  Sum_probs=85.3

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC--------------------cC----CHHhHHHH
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--------------------IL----NLSIQYWT  521 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~--------------------~~----~~~~~~~a  521 (623)
                      |.+. +|..|+.+.+.|.+         +..+|+++||-.......                    .|    ...++.|+
T Consensus         2 ~~~~-~g~~l~~~~~~~~~---------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~   71 (332)
T TIGR01607         2 FRNK-DGLLLKTYSWIVKN---------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFN   71 (332)
T ss_pred             ccCC-CCCeEEEeeeeccC---------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHH
Confidence            3455 88889988888753         236999999963222111                    11    24688999


Q ss_pred             cCceEEEEECCCCCCCCchhHHHhhc-cCCccchHHHHHHHHHHHHhC------------------CCCCCCceEEEEcC
Q 006979          522 SRGWAFVDVNYGGSTGYGREFRERLL-GRWGIVDVNDCCSCATFLVGS------------------GKADEKRLCITGGS  582 (623)
Q Consensus       522 ~~G~~v~~~d~rGs~~~g~~~~~~~~-~~~g~~~~~D~~~~~~~l~~~------------------~~~d~~rv~i~G~S  582 (623)
                      ++||.|+.+|.||.|.....-..... ..| ..-++|+...++.+.++                  ..-+...+.|+|||
T Consensus        72 ~~G~~V~~~D~rGHG~S~~~~~~~g~~~~~-~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhS  150 (332)
T TIGR01607        72 KNGYSVYGLDLQGHGESDGLQNLRGHINCF-DDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLS  150 (332)
T ss_pred             HCCCcEEEecccccCCCccccccccchhhH-HHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeecc
Confidence            99999999999997754321000000 111 12246777777776542                  01113579999999


Q ss_pred             hHHHHHHHHh-cCCC--------ceeEEEecccCC
Q 006979          583 AGGYTTLAAL-AFRD--------TFKAGASLYGVS  608 (623)
Q Consensus       583 ~GG~~~~~~~-~~~~--------~f~a~v~~~g~~  608 (623)
                      |||.+++..+ .+++        .++++|+.+|..
T Consensus       151 mGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~  185 (332)
T TIGR01607       151 MGGNIALRLLELLGKSNENNDKLNIKGCISLSGMI  185 (332)
T ss_pred             CccHHHHHHHHHhccccccccccccceEEEeccce
Confidence            9999999877 4432        588999888764

These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.

>TIGR03611 RutD pyrimidine utilization protein D

Probab=98.72  E-value=3.8e-08  Score=97.30  Aligned_cols=104  Identities=15%  Similarity=0.152  Sum_probs=70.2

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      ..|.||++||.+..  ...|...+..+. +||.|+++|+||.|......    ..   ....+|....+..++++  .+.
T Consensus        12 ~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~----~~---~~~~~~~~~~~~~~i~~--~~~   79 (257)
T TIGR03611        12 DAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRGTGRSPGEL----PP---GYSIAHMADDVLQLLDA--LNI   79 (257)
T ss_pred             CCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCCCCCCCCCC----cc---cCCHHHHHHHHHHHHHH--hCC
Confidence            45789999998543  234444555554 57999999999977654321    11   12234443333333332  235


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      +++.++|+|+||++++.++ .+|+.++++|...+..+
T Consensus        80 ~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~  116 (257)
T TIGR03611        80 ERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSR  116 (257)
T ss_pred             CcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCC
Confidence            7899999999999999998 78889999998887543

This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.

>PLN02965 Probable pheophorbidase

Probab=98.71  E-value=6.3e-08  Score=96.40  Aligned_cols=100  Identities=15%  Similarity=0.136  Sum_probs=70.0

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC-Cc
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE-KR  575 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~-~r  575 (623)
                      .||++||.+.  ....|...+..|+++||.|+++|+||.|.+...     ..  .....+++.+-+..+++.  .+. ++
T Consensus         5 ~vvllHG~~~--~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~-----~~--~~~~~~~~a~dl~~~l~~--l~~~~~   73 (255)
T PLN02965          5 HFVFVHGASH--GAWCWYKLATLLDAAGFKSTCVDLTGAGISLTD-----SN--TVSSSDQYNRPLFALLSD--LPPDHK   73 (255)
T ss_pred             EEEEECCCCC--CcCcHHHHHHHHhhCCceEEEecCCcCCCCCCC-----cc--ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence            4899999853  334566778888899999999999997654321     00  112234444433333332  112 59


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +.++||||||.+++.++ .+|++++.+|...+.
T Consensus        74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~  106 (255)
T PLN02965         74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAA  106 (255)
T ss_pred             EEEEecCcchHHHHHHHHhCchheeEEEEEccc
Confidence            99999999999999988 889999998877654

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.71  E-value=5.9e-07  Score=98.73  Aligned_cols=158  Identities=11%  Similarity=0.092  Sum_probs=98.9

Q ss_pred             CCEEEEEe-------CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCC---CCCCceeEE
Q 006979          154 GDTVIFSN-------YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ---DALNSTTEI  223 (623)
Q Consensus       154 ~d~l~f~~-------~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~---~~~~~~~~L  223 (623)
                      ++.++|+.       ....+||+.+.. +  ..++++.+     .....|+|||||++|+++......   .......+|
T Consensus       361 G~~vA~v~~~~~~~~d~~s~Lwv~~~g-g--~~~~lt~g-----~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql  432 (591)
T PRK13616        361 GRQVAAVVTLGRGAPDPASSLWVGPLG-G--VAVQVLEG-----HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL  432 (591)
T ss_pred             CCEEEEEEeecCCCCCcceEEEEEeCC-C--cceeeecC-----CCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence            34777776       223469999874 3  45788765     236789999999999988643110   001123689


Q ss_pred             EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec--CCCc--eeeeEEE-cCCCCC
Q 006979          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGD--VYKRVCV-AGFDPT  298 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~--~~~~--~~~~~~~-~~~~~~  298 (623)
                      |++++++++   .++  .-..-+..++|||||++|+|+. .        .+|++.-+.  ++|.  +...+.+ .+..  
T Consensus       433 ~~~~vd~ge---~~~--~~~g~Issl~wSpDG~RiA~i~-~--------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~--  496 (591)
T PRK13616        433 ARTPVDASA---VAS--RVPGPISELQLSRDGVRAAMII-G--------GKVYLAVVEQTEDGQYALTNPREVGPGLG--  496 (591)
T ss_pred             EEEeccCch---hhh--ccCCCcCeEEECCCCCEEEEEE-C--------CEEEEEEEEeCCCCceeecccEEeecccC--
Confidence            999998886   443  2122367789999999999997 2        257774332  2332  2222223 2222  


Q ss_pred             ccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEE
Q 006979          299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA  339 (623)
Q Consensus       299 ~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~  339 (623)
                        .......|..|++|+....  .+...+|.+++++...+.
T Consensus       497 --~~~~~l~W~~~~~L~V~~~--~~~~~v~~v~vDG~~~~~  533 (591)
T PRK13616        497 --DTAVSLDWRTGDSLVVGRS--DPEHPVWYVNLDGSNSDA  533 (591)
T ss_pred             --CccccceEecCCEEEEEec--CCCCceEEEecCCccccc
Confidence              2346789999998765544  355678999887665443

>PRK10673 acyl-CoA esterase; Provisional

Probab=98.71  E-value=6.1e-08  Score=96.26  Aligned_cols=98  Identities=15%  Similarity=0.082  Sum_probs=68.3

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCc-cchHHHHHHHHHHHHhCCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG-IVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g-~~~~~D~~~~~~~l~~~~~~  571 (623)
                      ...|.||++||.+...  ..|...+..|+ .+|.|+.+|+||.|.....      ..+. ....+|+.+.++++      
T Consensus        14 ~~~~~iv~lhG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~------~~~~~~~~~~d~~~~l~~l------   78 (255)
T PRK10673         14 HNNSPIVLVHGLFGSL--DNLGVLARDLV-NDHDIIQVDMRNHGLSPRD------PVMNYPAMAQDLLDTLDAL------   78 (255)
T ss_pred             CCCCCEEEECCCCCch--hHHHHHHHHHh-hCCeEEEECCCCCCCCCCC------CCCCHHHHHHHHHHHHHHc------
Confidence            4457899999985433  34555566665 4799999999996654321      1111 12245566655554      


Q ss_pred             CCCceEEEEcChHHHHHHHHh-cCCCceeEEEecc
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLY  605 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~  605 (623)
                      ..+++.++|||+||.+++.++ .+|++++++|...
T Consensus        79 ~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~  113 (255)
T PRK10673         79 QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAID  113 (255)
T ss_pred             CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEe
Confidence            346899999999999999998 7899999988763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.70  E-value=6.9e-06  Score=85.50  Aligned_cols=226  Identities=15%  Similarity=0.115  Sum_probs=120.4

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceE
Q 006979          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE  274 (623)
Q Consensus       195 d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~  274 (623)
                      -..++|++++|+.+.+.....   ..-..|.++.++++.+.+...............+|||++|+.....       ...
T Consensus        41 ~l~~~~~~~~LY~~~e~~~~~---g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~-------~g~  110 (345)
T PF10282_consen   41 WLAVSPDGRRLYVVNEGSGDS---GGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG-------GGS  110 (345)
T ss_dssp             CEEE-TTSSEEEEEETTSSTT---TEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT-------TTE
T ss_pred             eEEEEeCCCEEEEEEccccCC---CCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc-------CCe
Confidence            467899999998887753111   1234555555546522222222223333456799999988766422       445


Q ss_pred             EEEEEecCCCceeeeE-EEc----CCCC--CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccc
Q 006979          275 LWVGYISENGDVYKRV-CVA----GFDP--TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF  347 (623)
Q Consensus       275 L~v~d~~~~~~~~~~~-~~~----~~~~--~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~  347 (623)
                      +.+++++..+.+.... +..    +..+  ..........++|||+.+|+.+...+.-.+|.++..++++.....-... 
T Consensus       111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~-  189 (345)
T PF10282_consen  111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP-  189 (345)
T ss_dssp             EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS-
T ss_pred             EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc-
Confidence            8899998766533322 121    1110  0012345678999999778888744444444444444434432211111 


Q ss_pred             ccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecc----cCC-c----ceEee--eecCCEEEEE
Q 006979          348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD----IPF-T----DIDNI--TLGNDCLFVE  416 (623)
Q Consensus       348 ~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt----~~~-~----~v~~~--~~~~~~~~~~  416 (623)
                          .-.+.+.+.|.+   +++.+|+..+..+.-.++.++..++.++.+.    .+. .    .-..+  +++++.+|+.
T Consensus       190 ----~G~GPRh~~f~p---dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs  262 (345)
T PF10282_consen  190 ----PGSGPRHLAFSP---DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS  262 (345)
T ss_dssp             ----TTSSEEEEEE-T---TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred             ----cCCCCcEEEEcC---CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence                112445666664   8888999888788888888886666654332    111 0    12233  7778777776


Q ss_pred             EecCCCCCeEEEEEcCCCcceee
Q 006979          417 GASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       417 ~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      ... ...=.+|.++.++++++.+
T Consensus       263 nr~-~~sI~vf~~d~~~g~l~~~  284 (345)
T PF10282_consen  263 NRG-SNSISVFDLDPATGTLTLV  284 (345)
T ss_dssp             ECT-TTEEEEEEECTTTTTEEEE
T ss_pred             ecc-CCEEEEEEEecCCCceEEE
Confidence            544 2222344444456666544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PLN02824 hydrolase, alpha/beta fold family protein

Probab=98.70  E-value=1.4e-07  Score=96.07  Aligned_cols=106  Identities=10%  Similarity=-0.012  Sum_probs=72.4

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+.+  ...|...+..|+++ |.|+++|+||.|.+...-....... .....+|....+..++++-.  .++
T Consensus        30 ~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~-~~~~~~~~a~~l~~~l~~l~--~~~  103 (294)
T PLN02824         30 PALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPN-SFYTFETWGEQLNDFCSDVV--GDP  103 (294)
T ss_pred             CeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCcccccccc-ccCCHHHHHHHHHHHHHHhc--CCC
Confidence            678999998544  34677778888877 6999999999776543110000000 12334554444444433211  378


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +.++|||+||++++.++ .+|++++++|...+.
T Consensus       104 ~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~  136 (294)
T PLN02824        104 AFVICNSVGGVVGLQAAVDAPELVRGVMLINIS  136 (294)
T ss_pred             eEEEEeCHHHHHHHHHHHhChhheeEEEEECCC
Confidence            99999999999999988 889999999998764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.69  E-value=5.8e-06  Score=83.38  Aligned_cols=225  Identities=11%  Similarity=0.067  Sum_probs=127.0

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      .+.++|++-..++|+++++.++  ..+.....    ....+....+.+|..  ++++          ..+++++++.+. 
T Consensus        36 ~~~L~w~DI~~~~i~r~~~~~g--~~~~~~~p----~~~~~~~~~d~~g~L--v~~~----------~g~~~~~~~~~~-   96 (307)
T COG3386          36 RGALLWVDILGGRIHRLDPETG--KKRVFPSP----GGFSSGALIDAGGRL--IACE----------HGVRLLDPDTGG-   96 (307)
T ss_pred             CCEEEEEeCCCCeEEEecCCcC--ceEEEECC----CCcccceeecCCCeE--EEEc----------cccEEEeccCCc-
Confidence            3468999988899999999876  45554432    233334446666643  3333          336667766554 


Q ss_pred             ccc-eecccCC-----CcccceeeCCCCCEEEEEEec-----CCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979          234 QEP-KVLVSGS-----DFYAFPRMDPRGERMAWIEWH-----HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (623)
Q Consensus       234 ~~~-~~l~~~~-----~~~~~p~wSPDG~~la~~~~~-----~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~  302 (623)
                        . +.++...     ...+.-...|||+ ++|....     .+. .-....||+++..+.    ..+++.+.-    ..
T Consensus        97 --~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~-~~~~G~lyr~~p~g~----~~~l~~~~~----~~  164 (307)
T COG3386          97 --KITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSE-ERPTGSLYRVDPDGG----VVRLLDDDL----TI  164 (307)
T ss_pred             --eeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccc-cCCcceEEEEcCCCC----EEEeecCcE----Ee
Confidence              3 3333211     1234456899998 6666544     111 112447888886433    444544422    45


Q ss_pred             CcCceeCCCCcEEEEEeCCCCeeeEEEEecCC--Ce---EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEE
Q 006979          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESN--NE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ  377 (623)
Q Consensus       303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~--~~---~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~  377 (623)
                      ...++|||||+.+|+++.  ...+|++++.+.  +.   .+.......+-+.|.      .+..     |.+..+|....
T Consensus       165 ~NGla~SpDg~tly~aDT--~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD------G~~v-----DadG~lw~~a~  231 (307)
T COG3386         165 PNGLAFSPDGKTLYVADT--PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD------GMAV-----DADGNLWVAAV  231 (307)
T ss_pred             cCceEECCCCCEEEEEeC--CCCeEEEEecCcccCccCCcceEEEccCCCCCCC------ceEE-----eCCCCEEEecc
Confidence            578999999996666775  455788776642  11   111111111223332      2233     33333443434


Q ss_pred             CCeEEEEEEeCCCCceeecccCCcceEee---eecCCEEEEEEecCCC
Q 006979          378 NGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGASGVE  422 (623)
Q Consensus       378 ~g~~~L~~~d~~~~~~~~lt~~~~~v~~~---~~~~~~~~~~~~s~~~  422 (623)
                      .+...|.+++++++.+..+..|.......   .++.+++|++++....
T Consensus       232 ~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         232 WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGM  279 (307)
T ss_pred             cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCC
Confidence            44467888999977777777774433322   5567888888765533

>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein

Probab=98.69  E-value=1.3e-07  Score=95.10  Aligned_cols=102  Identities=15%  Similarity=0.038  Sum_probs=70.4

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|.||++||.+.  ....|....+.+++ +|.|+.+|+||.|......     .  .....++..+.+..++++  .+.+
T Consensus        28 ~~~vv~~hG~~~--~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~-----~--~~~~~~~~~~~l~~~i~~--~~~~   95 (278)
T TIGR03056        28 GPLLLLLHGTGA--STHSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPF-----R--FRFTLPSMAEDLSALCAA--EGLS   95 (278)
T ss_pred             CCeEEEEcCCCC--CHHHHHHHHHHHhh-CcEEEeecCCCCCCCCCcc-----c--cCCCHHHHHHHHHHHHHH--cCCC
Confidence            478999999843  33345566666654 6999999999965432211     0  122345555555555544  2236


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.|+|||+||.+++.++ .+|++++++|...+..
T Consensus        96 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~  130 (278)
T TIGR03056        96 PDGVIGHSAGAAIALRLALDGPVTPRMVVGINAAL  130 (278)
T ss_pred             CceEEEECccHHHHHHHHHhCCcccceEEEEcCcc
Confidence            889999999999999999 7898888888877643

Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.

>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3

Probab=98.68  E-value=5.6e-08  Score=91.79  Aligned_cols=116  Identities=19%  Similarity=0.186  Sum_probs=89.0

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccch
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD  554 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~  554 (623)
                      .+..++.|..       .+.+|+|+++||.  ......|.-..+..+++||+|++|+.....           ..-+..+
T Consensus        33 kpLlI~tP~~-------~G~yPVilF~HG~--~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~-----------~p~~~~E   92 (307)
T PF07224_consen   33 KPLLIVTPSE-------AGTYPVILFLHGF--NLYNSFYSQLLAHIASHGFIVVAPQLYTLF-----------PPDGQDE   92 (307)
T ss_pred             CCeEEecCCc-------CCCccEEEEeech--hhhhHHHHHHHHHHhhcCeEEEechhhccc-----------CCCchHH
Confidence            4556777876       7889999999998  344445566788889999999999976421           1234567


Q ss_pred             HHHHHHHHHHHHhC--------CCCCCCceEEEEcChHHHHHHHHh-cC--CCceeEEEecccCCCH
Q 006979          555 VNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAAL-AF--RDTFKAGASLYGVSIP  610 (623)
Q Consensus       555 ~~D~~~~~~~l~~~--------~~~d~~rv~i~G~S~GG~~~~~~~-~~--~~~f~a~v~~~g~~d~  610 (623)
                      +++..++++||.+.        -..+.++++++|||.||.++.+++ .+  .-.|.|.|-+.|+.-.
T Consensus        93 i~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~  159 (307)
T PF07224_consen   93 IKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGT  159 (307)
T ss_pred             HHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCC
Confidence            88999999999752        125778999999999999999888 55  3468999988887644

1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process

>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]

Probab=98.67  E-value=5.2e-08  Score=93.85  Aligned_cols=113  Identities=19%  Similarity=0.299  Sum_probs=78.8

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc--------------hhHHHh--hccC---Cc-
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG--------------REFRER--LLGR---WG-  551 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g--------------~~~~~~--~~~~---~g-  551 (623)
                      +.++|+||+.||-  +..+.-|+.....+|++||+|+++.+|-..-.-              +.|++-  ...+   .- 
T Consensus       115 ~~k~PvvvFSHGL--ggsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~i  192 (399)
T KOG3847|consen  115 NDKYPVVVFSHGL--GGSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHI  192 (399)
T ss_pred             CCCccEEEEeccc--ccchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEe
Confidence            7899999999998  556667888899999999999999999753211              111110  0000   00 


Q ss_pred             -----cchHHHHHHHHHHHHh---------------------CCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecc
Q 006979          552 -----IVDVNDCCSCATFLVG---------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY  605 (623)
Q Consensus       552 -----~~~~~D~~~~~~~l~~---------------------~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~  605 (623)
                           ..-++.|..|+.-|.+                     ++.+|..+++|+|||+||.+++........|+|+|+..
T Consensus       193 rNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~FrcaI~lD  272 (399)
T KOG3847|consen  193 RNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTDFRCAIALD  272 (399)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccccceeeeeeee
Confidence                 0113455555554432                     34578899999999999999999886556799999875


Q ss_pred             c
Q 006979          606 G  606 (623)
Q Consensus       606 g  606 (623)
                      +
T Consensus       273 ~  273 (399)
T KOG3847|consen  273 A  273 (399)
T ss_pred             e
Confidence            5

>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily

Probab=98.67  E-value=1.8e-07  Score=95.83  Aligned_cols=101  Identities=17%  Similarity=0.062  Sum_probs=67.9

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      +.||++||++.....   ......+...+|.|+.+|+||.|.....      ........+|+.+.+..+.++-  +.++
T Consensus        28 ~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~------~~~~~~~~~~~~~dl~~l~~~l--~~~~   96 (306)
T TIGR01249        28 KPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRGCGKSTPH------ACLEENTTWDLVADIEKLREKL--GIKN   96 (306)
T ss_pred             CEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCCCCCCCCC------CCcccCCHHHHHHHHHHHHHHc--CCCC
Confidence            457889998655332   1233445567999999999996543211      0011123456666666665542  3468


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +.++|+||||++++.++ .+|+.++++|...+.
T Consensus        97 ~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~  129 (306)
T TIGR01249        97 WLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIF  129 (306)
T ss_pred             EEEEEECHHHHHHHHHHHHChHhhhhheeeccc
Confidence            99999999999999998 889988888876543

This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.

>PLN02894 hydrolase, alpha/beta fold family protein

Probab=98.66  E-value=1.2e-07  Score=100.66  Aligned_cols=103  Identities=16%  Similarity=0.140  Sum_probs=68.0

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc-chHH-HHHHH-HHHHHhCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVN-DCCSC-ATFLVGSGK  570 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~-D~~~~-~~~l~~~~~  570 (623)
                      ..|.||++||.+...  ..|...+..|++ +|.|+.+|+||.|...+..     ..... .+.+ .+.+. .+|+.+.  
T Consensus       104 ~~p~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~-----~~~~~~~~~~~~~~~~i~~~~~~l--  173 (402)
T PLN02894        104 DAPTLVMVHGYGASQ--GFFFRNFDALAS-RFRVIAIDQLGWGGSSRPD-----FTCKSTEETEAWFIDSFEEWRKAK--  173 (402)
T ss_pred             CCCEEEEECCCCcch--hHHHHHHHHHHh-CCEEEEECCCCCCCCCCCC-----cccccHHHHHHHHHHHHHHHHHHc--
Confidence            347899999985432  234445566665 5999999999977654321     01110 1112 22323 3344333  


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                       +.+++.++|||+||++++.++ .+|+.++++|...|.
T Consensus       174 -~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~  210 (402)
T PLN02894        174 -NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA  210 (402)
T ss_pred             -CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence             346899999999999999888 889999998888664

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=98.66  E-value=2.2e-07  Score=98.06  Aligned_cols=135  Identities=19%  Similarity=0.186  Sum_probs=87.6

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCc----eEEEEECCCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDVNYGGST  536 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G----~~v~~~d~rGs~  536 (623)
                      .+.+.+.+..-|.....++|.|.+  |.   .+++|+|+++||..+..... .......+.++|    .+++.+|.....
T Consensus       180 ~~~~~~~S~~Lg~~r~v~VY~P~~--y~---~~~~PvlyllDG~~w~~~~~-~~~~ld~li~~g~i~P~ivV~id~~~~~  253 (411)
T PRK10439        180 AKEIIWKSERLGNSRRVWIYTTGD--AA---PEERPLAILLDGQFWAESMP-VWPALDSLTHRGQLPPAVYLLIDAIDTT  253 (411)
T ss_pred             eEEEEEEccccCCceEEEEEECCC--CC---CCCCCEEEEEECHHhhhcCC-HHHHHHHHHHcCCCCceEEEEECCCCcc
Confidence            355666664356778889999987  43   35799999999986543322 223344566666    456788753221


Q ss_pred             CCchhHHHhhccCCccchHHH-H-HHHHHHHHhCCC--CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          537 GYGREFRERLLGRWGIVDVND-C-CSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D-~-~~~~~~l~~~~~--~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ....++.       ....+.+ + .+.+.++.++..  .|+++.+|.|.||||+.++.++ .+|++|.++++++|-.
T Consensus       254 ~R~~el~-------~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~  323 (411)
T PRK10439        254 HRSQELP-------CNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF  323 (411)
T ss_pred             cccccCC-------chHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence            1111110       0111222 2 244456655533  5889999999999999999998 9999999999999853

>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional

Probab=98.65  E-value=1.9e-07  Score=99.84  Aligned_cols=120  Identities=12%  Similarity=0.056  Sum_probs=79.3

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH-HhHHHH---cCceEEEEECCCCCCCCchhHHHhh
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWT---SRGWAFVDVNYGGSTGYGREFRERL  546 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~-~~~~~a---~~G~~v~~~d~rGs~~~g~~~~~~~  546 (623)
                      ++..++.....|.+       +...|.||++||.+...  ..|.. ....|+   +++|.|+++|+||.|.+...    .
T Consensus       184 ~~~~l~~~~~gp~~-------~~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p----~  250 (481)
T PLN03087        184 SNESLFVHVQQPKD-------NKAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP----A  250 (481)
T ss_pred             CCeEEEEEEecCCC-------CCCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC----C
Confidence            56778877777764       22236789999995433  23332 224444   47999999999996654321    0


Q ss_pred             ccCCccchHHHHHHHH-HHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          547 LGRWGIVDVNDCCSCA-TFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       547 ~~~~g~~~~~D~~~~~-~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ...   ...++..+.+ +.+++.  .+.+++.++||||||++++.++ .+|++++++|...+..
T Consensus       251 ~~~---ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~  309 (481)
T PLN03087        251 DSL---YTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPY  309 (481)
T ss_pred             CCc---CCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCc
Confidence            111   2344444444 234443  2346899999999999999988 8999999999887643

>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase

Probab=98.65  E-value=1.2e-07  Score=95.44  Aligned_cols=115  Identities=14%  Similarity=0.063  Sum_probs=76.0

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|.+++.+....         +...|.||++||.+..  ...|......|.+ +|.|+++|+||.|.+...     ...+
T Consensus        10 ~~~~~~~~~~~~---------~~~~~plvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~-----~~~~   72 (276)
T TIGR02240        10 DGQSIRTAVRPG---------KEGLTPLLIFNGIGAN--LELVFPFIEALDP-DLEVIAFDVPGVGGSSTP-----RHPY   72 (276)
T ss_pred             CCcEEEEEEecC---------CCCCCcEEEEeCCCcc--hHHHHHHHHHhcc-CceEEEECCCCCCCCCCC-----CCcC
Confidence            577777655421         1122467889997433  3356666777655 699999999996654321     1111


Q ss_pred             cc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          551 GI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       551 g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .. ...+|+.+.++++      +.+++.++|||+||++++.++ .+|+++++.|..++..
T Consensus        73 ~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~  126 (276)
T TIGR02240        73 RFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAA  126 (276)
T ss_pred             cHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCC
Confidence            11 1134444444443      346899999999999999999 7899999999988764

This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.63  E-value=3.4e-06  Score=88.00  Aligned_cols=252  Identities=12%  Similarity=0.131  Sum_probs=123.5

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      ++++...++.|.++|.++. .....+..+    ........++|||++++....+         +.|.++|+.+++.  +
T Consensus         8 ~~V~~~~~~~v~viD~~t~-~~~~~i~~~----~~~h~~~~~s~Dgr~~yv~~rd---------g~vsviD~~~~~~--v   71 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATN-KVVARIPTG----GAPHAGLKFSPDGRYLYVANRD---------GTVSVIDLATGKV--V   71 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT--SEEEEEE-S----TTEEEEEE-TT-SSEEEEEETT---------SEEEEEETTSSSE--E
T ss_pred             EEEEecCCCEEEEEECCCC-eEEEEEcCC----CCceeEEEecCCCCEEEEEcCC---------CeEEEEECCcccE--E
Confidence            4455556788999998875 223445433    1224456789999987665322         5699999999873  4


Q ss_pred             eecccCCCcccceeeCCCCCEEEEEEecCCCC-------------------C------------------------CCce
Q 006979          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM-------------------P------------------------WDKA  273 (623)
Q Consensus       237 ~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~-------------------p------------------------~~~~  273 (623)
                      ..+..+.. ..+.++|||||+|+...+..+.+                   +                        .+..
T Consensus        72 ~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~  150 (369)
T PF02239_consen   72 ATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG  150 (369)
T ss_dssp             EEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred             EEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC
Confidence            44544433 34577999999987665332210                   0                        0112


Q ss_pred             EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc-cc------
Q 006979          274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AE------  346 (623)
Q Consensus       274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-~~------  346 (623)
                      ++|++|......+....+-.  .    ..+.+..|+|||+.++++..  +...|..+|..+++...+.... ..      
T Consensus       151 ~I~vVdy~d~~~~~~~~i~~--g----~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~  222 (369)
T PF02239_consen  151 EIWVVDYSDPKNLKVTTIKV--G----RFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGA  222 (369)
T ss_dssp             EEEEEETTTSSCEEEEEEE--------TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEE
T ss_pred             eEEEEEeccccccceeeecc--c----ccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccc
Confidence            22333322211100011111  1    23456789999995555433  2236667777666544332110 00      


Q ss_pred             -----cccccccccCcce-------------------------------eEEeecCCCCEEEEEE-EECCeEEEEEEeCC
Q 006979          347 -----FSRPLWVFGINSY-------------------------------EIIQSHGEKNLIACSY-RQNGRSYLGILDDF  389 (623)
Q Consensus       347 -----~~~~~w~~~~~~~-------------------------------~~l~~s~~~~~l~~~~-~~~g~~~L~~~d~~  389 (623)
                           ..++.|.......                               .|+..+|+++++++.. .......|.++|.+
T Consensus       223 ~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~  302 (369)
T PF02239_consen  223 NFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK  302 (369)
T ss_dssp             EEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred             cccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence                 0111232111100                               1222366777777651 12336678899987


Q ss_pred             CCce-eecccCCc--ce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          390 GHSL-SLLDIPFT--DI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       390 ~~~~-~~lt~~~~--~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      +-+. ..+.....  .+ -.++.+|+++++.......  +|..+|.++.+
T Consensus       303 tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~--~i~v~D~~Tl~  350 (369)
T PF02239_consen  303 TLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG--AIVVYDAKTLK  350 (369)
T ss_dssp             GTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT--EEEEEETTTTE
T ss_pred             CcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC--EEEEEECCCcE
Confidence            7543 44543222  22 2348899999987764443  89999987765

...

>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes

Probab=98.63  E-value=1.4e-07  Score=94.52  Aligned_cols=111  Identities=14%  Similarity=0.097  Sum_probs=76.0

Q ss_pred             CCCCEEEEecCCCCCcccCcCC-HHhHHH-HcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILN-LSIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~-~~~~~~-a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      ...|++|++||...... ..+. .....+ ...+|.|+.+|+++...  ..|..... +. ....+++...+++|.++..
T Consensus        34 ~~~p~vilIHG~~~~~~-~~~~~~l~~~ll~~~~~nVi~vD~~~~~~--~~y~~a~~-~~-~~v~~~la~~l~~L~~~~g  108 (275)
T cd00707          34 PSRPTRFIIHGWTSSGE-ESWISDLRKAYLSRGDYNVIVVDWGRGAN--PNYPQAVN-NT-RVVGAELAKFLDFLVDNTG  108 (275)
T ss_pred             CCCCcEEEEcCCCCCCC-CcHHHHHHHHHHhcCCCEEEEEECccccc--cChHHHHH-hH-HHHHHHHHHHHHHHHHhcC
Confidence            34588999999854331 2222 334434 44689999999997522  12221111 01 1123577888888888755


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.++|.++|||+||++++.++ .++++++.++.+.|..
T Consensus       109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~  147 (275)
T cd00707         109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG  147 (275)
T ss_pred             CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence            6789999999999999999999 7788999999887753

Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.

>KOG3101 consensus Esterase D [General function prediction only]

Probab=98.61  E-value=8.5e-08  Score=87.21  Aligned_cols=133  Identities=17%  Similarity=0.170  Sum_probs=83.5

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC--HHhHHH-HcCceEEEEEC--CCCCCCCchh------
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--LSIQYW-TSRGWAFVDVN--YGGSTGYGRE------  541 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~--~~~~~~-a~~G~~v~~~d--~rGs~~~g~~------  541 (623)
                      ..+..-+|.|...    +.+++.|++.++-|-.  .....|.  ...|.. .++|++|+.||  .||..--|.+      
T Consensus        26 c~Mtf~vylPp~a----~~~k~~P~lf~LSGLT--CT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG   99 (283)
T KOG3101|consen   26 CSMTFGVYLPPDA----PRGKRCPVLFYLSGLT--CTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFG   99 (283)
T ss_pred             cceEEEEecCCCc----ccCCcCceEEEecCCc--ccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCccccccc
Confidence            3444455666442    2377799999998873  2222222  234444 46899999998  6764321111      


Q ss_pred             -----HHHhhccCCcc-c-hHHHHHHHHHHHHh--CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          542 -----FRERLLGRWGI-V-DVNDCCSCATFLVG--SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       542 -----~~~~~~~~~g~-~-~~~D~~~~~~~l~~--~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                           |.++..+.|.. . +++-+..-+-.++.  .-.+|+.|++|+||||||+-++... +.+.+++.+.+++||+|..
T Consensus       100 ~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~  179 (283)
T KOG3101|consen  100 QGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPI  179 (283)
T ss_pred             CCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcc
Confidence                 23333344433 1 12222222222332  2248999999999999999999887 8899999999999999864

>PRK03592 haloalkane dehalogenase; Provisional

Probab=98.60  E-value=5.8e-07  Score=91.52  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=69.8

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+.+  ...|...++.|++++ .|+++|.||.|.+...     ...+   ..++..+.+..++++  .+.++
T Consensus        28 ~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G~G~S~~~-----~~~~---~~~~~a~dl~~ll~~--l~~~~   94 (295)
T PRK03592         28 DPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIGMGASDKP-----DIDY---TFADHARYLDAWFDA--LGLDD   94 (295)
T ss_pred             CEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCCCCCCCCC-----CCCC---CHHHHHHHHHHHHHH--hCCCC
Confidence            578889998543  345667788888886 9999999997654332     1111   233333333333332  12368


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +.++|||+||.+++.++ .+|++++++|...++
T Consensus        95 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~  127 (295)
T PRK03592         95 VVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI  127 (295)
T ss_pred             eEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence            99999999999999999 899999999988863

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.59  E-value=4.7e-05  Score=75.39  Aligned_cols=202  Identities=13%  Similarity=0.083  Sum_probs=112.8

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ...+..+.++| ++.++... .   +|...+|.....   +....+..        +........+.++ ..++....++
T Consensus         9 ~~~i~~~~~~~~~~~l~~~~-~---~g~i~i~~~~~~---~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~~~   73 (289)
T cd00200           9 TGGVTCVAFSPDGKLLATGS-G---DGTIKVWDLETG---ELLRTLKG--------HTGPVRDVAASADGTYLASGSSDK   73 (289)
T ss_pred             CCCEEEEEEcCCCCEEEEee-c---CcEEEEEEeeCC---CcEEEEec--------CCcceeEEEECCCCCEEEEEcCCC
Confidence            44567888888 45444332 2   467667765432   21111111        1111223444444 3445555678


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~  245 (623)
                      .|+++++.++ .....+...    ........|+|+++.++....+         ..|.++|+.+++.  ...+......
T Consensus        74 ~i~i~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~--~~~~~~~~~~  137 (289)
T cd00200          74 TIRLWDLETG-ECVRTLTGH----TSYVSSVAFSPDGRILSSSSRD---------KTIKVWDVETGKC--LTTLRGHTDW  137 (289)
T ss_pred             eEEEEEcCcc-cceEEEecc----CCcEEEEEEcCCCCEEEEecCC---------CeEEEEECCCcEE--EEEeccCCCc
Confidence            8999999864 233444432    2245667899997766554322         5688899886541  2333333344


Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW  325 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~  325 (623)
                      .....|+|+++.|+... .       ...|+++|+..+.   ....+....    ..+....|+++++.+++... ++  
T Consensus       138 i~~~~~~~~~~~l~~~~-~-------~~~i~i~d~~~~~---~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-~~--  199 (289)
T cd00200         138 VNSVAFSPDGTFVASSS-Q-------DGTIKLWDLRTGK---CVATLTGHT----GEVNSVAFSPDGEKLLSSSS-DG--  199 (289)
T ss_pred             EEEEEEcCcCCEEEEEc-C-------CCcEEEEEccccc---cceeEecCc----cccceEEECCCcCEEEEecC-CC--
Confidence            56678999988766543 1       2248888887553   222333332    45678999999974434333 34  


Q ss_pred             eEEEEecCCCeEE
Q 006979          326 NLHKWIESNNEVL  338 (623)
Q Consensus       326 ~L~~~d~~~~~~~  338 (623)
                      .+..+|...++..
T Consensus       200 ~i~i~d~~~~~~~  212 (289)
T cd00200         200 TIKLWDLSTGKCL  212 (289)
T ss_pred             cEEEEECCCCcee
Confidence            4666676655433

>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase

Probab=98.58  E-value=2e-07  Score=97.45  Aligned_cols=129  Identities=15%  Similarity=0.153  Sum_probs=79.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC---------cCCHHh---HHHHcCceEEEEECCCC--CC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---------ILNLSI---QYWTSRGWAFVDVNYGG--ST  536 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~---------~~~~~~---~~~a~~G~~v~~~d~rG--s~  536 (623)
                      +|..++...+-+.+       ....|.||++||-..+....         .|....   ..+...+|.|+++|+||  .|
T Consensus        14 ~~~~~~y~~~g~~~-------~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g   86 (351)
T TIGR01392        14 SDVRVAYETYGTLN-------AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYG   86 (351)
T ss_pred             CCceEEEEeccccC-------CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCC
Confidence            45667665554432       12236899999975543221         122222   25557899999999999  23


Q ss_pred             CCchh-HHHh---hccCCccchHHHHHHHHHHHHhCCCCCCCc-eEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          537 GYGRE-FRER---LLGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       537 ~~g~~-~~~~---~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r-v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ..+.. +...   ...+.....++|..+.+..++++-  ..++ +.++||||||.+++.++ .+|++++++|...+..
T Consensus        87 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~  162 (351)
T TIGR01392        87 STGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSA  162 (351)
T ss_pred             CCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCC
Confidence            22221 0000   000111244667666665555442  2357 99999999999999888 8999999999887754

This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=98.55  E-value=5.6e-07  Score=94.78  Aligned_cols=101  Identities=12%  Similarity=0.110  Sum_probs=73.4

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|.||++||.+.  ....|......|.. +|.|+.+|+||.|.....        ....+.+++.+.+..+.++  ++..
T Consensus       131 ~~~vl~~HG~~~--~~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~~~  197 (371)
T PRK14875        131 GTPVVLIHGFGG--DLNNWLFNHAALAA-GRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LGIE  197 (371)
T ss_pred             CCeEEEECCCCC--ccchHHHHHHHHhc-CCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCCc
Confidence            478999998743  33345555666654 599999999997654321        1223466776666666654  4567


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.++|||+||++++.++ .+|+.++++|..+|..
T Consensus       198 ~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~  232 (371)
T PRK14875        198 RAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAG  232 (371)
T ss_pred             cEEEEeechHHHHHHHHHHhCchheeEEEEECcCC
Confidence            999999999999999888 7888999999887753

>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]

Probab=98.55  E-value=5.6e-07  Score=88.82  Aligned_cols=105  Identities=17%  Similarity=0.136  Sum_probs=77.1

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKAD  572 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d  572 (623)
                      ..|+|+++||.|..-.  .|+.....|+++||.|+++|+||.|.....   .....+-. ....|+.+.++.|-      
T Consensus        43 ~gP~illlHGfPe~wy--swr~q~~~la~~~~rviA~DlrGyG~Sd~P---~~~~~Yt~~~l~~di~~lld~Lg------  111 (322)
T KOG4178|consen   43 DGPIVLLLHGFPESWY--SWRHQIPGLASRGYRVIAPDLRGYGFSDAP---PHISEYTIDELVGDIVALLDHLG------  111 (322)
T ss_pred             CCCEEEEEccCCccch--hhhhhhhhhhhcceEEEecCCCCCCCCCCC---CCcceeeHHHHHHHHHHHHHHhc------
Confidence            4599999999986544  556677789999999999999995543221   11111211 22456666666664      


Q ss_pred             CCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      -+|+.+.||+||+.++..++ .+|++.++.|+.....-
T Consensus       112 ~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~  149 (322)
T KOG4178|consen  112 LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP  149 (322)
T ss_pred             cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC
Confidence            47999999999999999998 89999999998866543

>PRK03204 haloalkane dehalogenase; Provisional

Probab=98.54  E-value=2.6e-07  Score=93.62  Aligned_cols=100  Identities=17%  Similarity=0.083  Sum_probs=72.5

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+.  ....|......|.+ +|.|+++|+||.|.....-      . .....+++.+.+..++++  .+.++
T Consensus        35 ~~iv~lHG~~~--~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~------~-~~~~~~~~~~~~~~~~~~--~~~~~  102 (286)
T PRK03204         35 PPILLCHGNPT--WSFLYRDIIVALRD-RFRCVAPDYLGFGLSERPS------G-FGYQIDEHARVIGEFVDH--LGLDR  102 (286)
T ss_pred             CEEEEECCCCc--cHHHHHHHHHHHhC-CcEEEEECCCCCCCCCCCC------c-cccCHHHHHHHHHHHHHH--hCCCC
Confidence            67899999853  22345555666654 6999999999976543310      0 113467777777777765  24478


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +.++|||+||.+++.++ .+|++++++|...+.
T Consensus       103 ~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~  135 (286)
T PRK03204        103 YLSMGQDWGGPISMAVAVERADRVRGVVLGNTW  135 (286)
T ss_pred             EEEEEECccHHHHHHHHHhChhheeEEEEECcc
Confidence            99999999999999888 889999999876553

>PRK10349 carboxylesterase BioH; Provisional

Probab=98.54  E-value=3.7e-07  Score=90.80  Aligned_cols=95  Identities=15%  Similarity=0.114  Sum_probs=67.3

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      ..|.||++||.+  .....|......|.+. |.|+.+|+||.|....         +.....+++..   .+.+.   ..
T Consensus        12 g~~~ivllHG~~--~~~~~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~---------~~~~~~~~~~~---~l~~~---~~   73 (256)
T PRK10349         12 GNVHLVLLHGWG--LNAEVWRCIDEELSSH-FTLHLVDLPGFGRSRG---------FGALSLADMAE---AVLQQ---AP   73 (256)
T ss_pred             CCCeEEEECCCC--CChhHHHHHHHHHhcC-CEEEEecCCCCCCCCC---------CCCCCHHHHHH---HHHhc---CC
Confidence            345689999974  3334666777778654 9999999999665421         11123344433   33333   24


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                      +++.++|||+||++++.++ .+|++++++|...+
T Consensus        74 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~  107 (256)
T PRK10349         74 DKAIWLGWSLGGLVASQIALTHPERVQALVTVAS  107 (256)
T ss_pred             CCeEEEEECHHHHHHHHHHHhChHhhheEEEecC
Confidence            7999999999999999998 78999999987765

>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]

Probab=98.53  E-value=1.4e-06  Score=88.95  Aligned_cols=140  Identities=14%  Similarity=0.050  Sum_probs=94.3

Q ss_pred             EEEEeecCCCCeEEEE-EEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCch
Q 006979          462 ELIEFPTEVPGQKAYA-YYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR  540 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~-~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~  540 (623)
                      +..-++.+ ||..+.. |+..|....+  ++....|+||++||-.++..............++||.|+++|.||.+|..-
T Consensus        94 ~Reii~~~-DGG~~~lDW~~~~~~~~~--~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~L  170 (409)
T KOG1838|consen   94 TREIIKTS-DGGTVTLDWVENPDSRCR--TDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKL  170 (409)
T ss_pred             eeEEEEeC-CCCEEEEeeccCcccccC--CCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCcc
Confidence            34445555 6766665 4444443111  123567999999998766665555566777788999999999999766432


Q ss_pred             hHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC--CCceeEEEecccCCCH
Q 006979          541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF--RDTFKAGASLYGVSIP  610 (623)
Q Consensus       541 ~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~--~~~f~a~v~~~g~~d~  610 (623)
                      .-    ..-+-...-+|+.++++++.++-  ...++.++|+|+||.+....+ ..  ...+.|+++++-..|+
T Consensus       171 tT----pr~f~ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~  237 (409)
T KOG1838|consen  171 TT----PRLFTAGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDL  237 (409)
T ss_pred             CC----CceeecCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchh
Confidence            11    12233345799999999999873  234899999999999999887 32  2345566666655564

>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH

Probab=98.52  E-value=2.8e-07  Score=90.11  Aligned_cols=94  Identities=17%  Similarity=0.124  Sum_probs=65.8

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+  .....|...+..|+ .+|.|+.+|+||.|.....         ...+.+++.   +.+.+.  . .++
T Consensus         5 ~~iv~~HG~~--~~~~~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~~---~~~~~~--~-~~~   66 (245)
T TIGR01738         5 VHLVLIHGWG--MNAEVFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADAA---EAIAAQ--A-PDP   66 (245)
T ss_pred             ceEEEEcCCC--CchhhHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHHH---HHHHHh--C-CCC
Confidence            6789999974  33345666666775 4799999999996653211         112344443   334333  2 269


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +.++|||+||++++.++ .+|++++++|...+.
T Consensus        67 ~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~   99 (245)
T TIGR01738        67 AIWLGWSLGGLVALHIAATHPDRVRALVTVASS   99 (245)
T ss_pred             eEEEEEcHHHHHHHHHHHHCHHhhheeeEecCC
Confidence            99999999999999988 789989998877554

This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.

>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional

Probab=98.51  E-value=4.4e-07  Score=89.30  Aligned_cols=97  Identities=15%  Similarity=0.003  Sum_probs=66.1

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+...  ..|...+..+  .+|.|+++|+||.|.....-         ...+++..+-+..+++.-  +.++
T Consensus         3 p~vvllHG~~~~~--~~w~~~~~~l--~~~~vi~~D~~G~G~S~~~~---------~~~~~~~~~~l~~~l~~~--~~~~   67 (242)
T PRK11126          3 PWLVFLHGLLGSG--QDWQPVGEAL--PDYPRLYIDLPGHGGSAAIS---------VDGFADVSRLLSQTLQSY--NILP   67 (242)
T ss_pred             CEEEEECCCCCCh--HHHHHHHHHc--CCCCEEEecCCCCCCCCCcc---------ccCHHHHHHHHHHHHHHc--CCCC
Confidence            6799999985443  3666666666  37999999999976653311         113344333333333321  2479


Q ss_pred             eEEEEcChHHHHHHHHh-cCCC-ceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRD-TFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~-~f~a~v~~~g~  607 (623)
                      +.++|||+||.+++.++ .+++ ++++++...+.
T Consensus        68 ~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~  101 (242)
T PRK11126         68 YWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN  101 (242)
T ss_pred             eEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence            99999999999999998 7754 48988877654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.51  E-value=5.8e-05  Score=74.72  Aligned_cols=236  Identities=11%  Similarity=0.108  Sum_probs=130.8

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+..++++ .+++....++.++++++.++ .....+...    ........|+|+++.++....+         ..|++
T Consensus        12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~---------~~i~i   77 (289)
T cd00200          12 VTCVAFSPDGKLLATGSGDGTIKVWDLETG-ELLRTLKGH----TGPVRDVAASADGTYLASGSSD---------KTIRL   77 (289)
T ss_pred             EEEEEEcCCCCEEEEeecCcEEEEEEeeCC-CcEEEEecC----CcceeEEEECCCCCEEEEEcCC---------CeEEE
Confidence            345555554 44445445788999998765 222333322    2234467899999888776543         56888


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      +++.+++.  ...+...........|+|+++.|+ ....       ...|.++++..+.   ....+....    ..+..
T Consensus        78 ~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~-~~~~-------~~~i~~~~~~~~~---~~~~~~~~~----~~i~~  140 (289)
T cd00200          78 WDLETGEC--VRTLTGHTSYVSSVAFSPDGRILS-SSSR-------DKTIKVWDVETGK---CLTTLRGHT----DWVNS  140 (289)
T ss_pred             EEcCcccc--eEEEeccCCcEEEEEEcCCCCEEE-EecC-------CCeEEEEECCCcE---EEEEeccCC----CcEEE
Confidence            89887541  344443333455678999977554 4321       2358888887552   233333333    45678


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      ..|+|++++++.... ++  .|..+|..+++...... ....+....|.+            +++.+++... ++  .+.
T Consensus       141 ~~~~~~~~~l~~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~------------~~~~l~~~~~-~~--~i~  202 (289)
T cd00200         141 VAFSPDGTFVASSSQ-DG--TIKLWDLRTGKCVATLTGHTGEVNSVAFSP------------DGEKLLSSSS-DG--TIK  202 (289)
T ss_pred             EEEcCcCCEEEEEcC-CC--cEEEEEccccccceeEecCccccceEEECC------------CcCEEEEecC-CC--cEE
Confidence            899999876655543 23  46667776554333222 221222233332            6656666554 44  455


Q ss_pred             EEeCCCCcee-ecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          385 ILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       385 ~~d~~~~~~~-~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ++|...++.. .+......+..+  +++ +.+++.+.   ....++.+++..++
T Consensus       203 i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~---~~~~i~i~~~~~~~  252 (289)
T cd00200         203 LWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGS---EDGTIRVWDLRTGE  252 (289)
T ss_pred             EEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEc---CCCcEEEEEcCCce
Confidence            6676655443 332323334444  333 44554443   23467777776544

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.49  E-value=2.6e-05  Score=72.99  Aligned_cols=204  Identities=9%  Similarity=0.013  Sum_probs=121.9

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC--CCCCccceeeeecCCceEEEeCC-EEEEEeCCC
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT--PKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKD  164 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~--p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~  164 (623)
                      +++..+.+-. |...| .   +.|+|...||.+..-   .-++.+  +++           ..+..+.+. .=+|+...+
T Consensus        84 kNVtaVgF~~dgrWMy-T---gseDgt~kIWdlR~~---~~qR~~~~~sp-----------Vn~vvlhpnQteLis~dqs  145 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMY-T---GSEDGTVKIWDLRSL---SCQRNYQHNSP-----------VNTVVLHPNQTELISGDQS  145 (311)
T ss_pred             CceEEEEEeecCeEEE-e---cCCCceEEEEeccCc---ccchhccCCCC-----------cceEEecCCcceEEeecCC
Confidence            4555666643 33333 2   345788889877643   122222  222           345555555 446677788


Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-ccceeccc--
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QEPKVLVS--  241 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-~~~~~l~~--  241 (623)
                      |.|+++|+... .-..+|.++   +..........|||+.++.+...         +..|+.++-++.. ....++..  
T Consensus       146 g~irvWDl~~~-~c~~~liPe---~~~~i~sl~v~~dgsml~a~nnk---------G~cyvW~l~~~~~~s~l~P~~k~~  212 (311)
T KOG0315|consen  146 GNIRVWDLGEN-SCTHELIPE---DDTSIQSLTVMPDGSMLAAANNK---------GNCYVWRLLNHQTASELEPVHKFQ  212 (311)
T ss_pred             CcEEEEEccCC-ccccccCCC---CCcceeeEEEcCCCcEEEEecCC---------ccEEEEEccCCCccccceEhhhee
Confidence            89999999754 234556554   13556778899999999886432         5688888766431 11222221  


Q ss_pred             -CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979          242 -GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       242 -~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~  320 (623)
                       .........+|||+|+||-.+.|.        .+++.+.++-  +.....+.+..    ..+-+-.||.||+.++....
T Consensus       213 ah~~~il~C~lSPd~k~lat~ssdk--------tv~iwn~~~~--~kle~~l~gh~----rWvWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  213 AHNGHILRCLLSPDVKYLATCSSDK--------TVKIWNTDDF--FKLELVLTGHQ----RWVWDCAFSADGEYLVTASS  278 (311)
T ss_pred             cccceEEEEEECCCCcEEEeecCCc--------eEEEEecCCc--eeeEEEeecCC----ceEEeeeeccCccEEEecCC
Confidence             223344567999999999776553        2566665543  22344556655    44557788999986666555


Q ss_pred             CCCeeeEEEEecCCCeEEEE
Q 006979          321 KNGFWNLHKWIESNNEVLAI  340 (623)
Q Consensus       321 ~~g~~~L~~~d~~~~~~~~l  340 (623)
                       ++..+||  ++..++....
T Consensus       279 -d~~~rlW--~~~~~k~v~q  295 (311)
T KOG0315|consen  279 -DHTARLW--DLSAGKEVRQ  295 (311)
T ss_pred             -CCceeec--ccccCceeee
Confidence             5666666  4455554333

>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]

Probab=98.49  E-value=3.1e-07  Score=83.38  Aligned_cols=135  Identities=18%  Similarity=0.143  Sum_probs=94.0

Q ss_pred             CCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC-HHhHHHHcCceEEEEECCCCCC
Q 006979          458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       458 ~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~-~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      ....+.+.+-.  .|. -..-++.|.+         .-|++|++|||.+.......- ....-...+||.|+.++|-=+.
T Consensus        42 i~r~e~l~Yg~--~g~-q~VDIwg~~~---------~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~  109 (270)
T KOG4627|consen   42 IIRVEHLRYGE--GGR-QLVDIWGSTN---------QAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCP  109 (270)
T ss_pred             ccchhccccCC--CCc-eEEEEecCCC---------CccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCc
Confidence            45556666644  232 2234455533         347999999998765543322 3455667899999999985432


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh--cCCCceeEEEecccCCCHHHhh
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL--AFRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~--~~~~~f~a~v~~~g~~d~~~~~  614 (623)
                      .          ..--...+.|+...++|+.+.- -+.++|.+-|||+|+++++.++  .+..++.+++..+|+.|++.+.
T Consensus       110 q----------~htL~qt~~~~~~gv~filk~~-~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~  178 (270)
T KOG4627|consen  110 Q----------VHTLEQTMTQFTHGVNFILKYT-ENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELS  178 (270)
T ss_pred             c----------cccHHHHHHHHHHHHHHHHHhc-ccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHh
Confidence            1          1122345788999999998752 2346799999999999999888  4577899999999999998874


Q ss_pred             h
Q 006979          615 E  615 (623)
Q Consensus       615 ~  615 (623)
                      .
T Consensus       179 ~  179 (270)
T KOG4627|consen  179 N  179 (270)
T ss_pred             C
Confidence            3

>PLN02578 hydrolase

Probab=98.49  E-value=2.8e-07  Score=96.44  Aligned_cols=98  Identities=14%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccc-hHHHHHHHHHHHHhCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~-~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      |.||++||.+.  ....|......|++ +|.|+++|+||.|.+.+...     .+... ..+|+.+.++.+.      .+
T Consensus        87 ~~vvliHG~~~--~~~~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~-----~~~~~~~a~~l~~~i~~~~------~~  152 (354)
T PLN02578         87 LPIVLIHGFGA--SAFHWRYNIPELAK-KYKVYALDLLGFGWSDKALI-----EYDAMVWRDQVADFVKEVV------KE  152 (354)
T ss_pred             CeEEEECCCCC--CHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCccc-----ccCHHHHHHHHHHHHHHhc------cC
Confidence            34788999743  23345455666654 69999999999776654321     12111 1234444444442      36


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ++.++|||+||++++.++ .+|++++++|...+.
T Consensus       153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~  186 (354)
T PLN02578        153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSA  186 (354)
T ss_pred             CeEEEEECHHHHHHHHHHHhChHhcceEEEECCC
Confidence            899999999999999999 889999999987653

>PRK06489 hypothetical protein; Provisional

Probab=98.48  E-value=1.2e-06  Score=91.79  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=66.8

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHH-------HcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHH-HHHH
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYW-------TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCA-TFLV  566 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~-------a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~-~~l~  566 (623)
                      .|.||++||.+.+.....-......+       ..++|.|+++|+||.|.....- ...........++|+.+.+ ..+.
T Consensus        69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~-~~~~~~~~~~~~~~~a~~~~~~l~  147 (360)
T PRK06489         69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPS-DGLRAAFPRYDYDDMVEAQYRLVT  147 (360)
T ss_pred             CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCC-cCCCCCCCcccHHHHHHHHHHHHH
Confidence            46799999986543221101222222       2578999999999976542110 0000011123456665443 3343


Q ss_pred             hCCCCCCCceE-EEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          567 GSGKADEKRLC-ITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       567 ~~~~~d~~rv~-i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ++  .+-+++. |+|+||||++++.++ .+|++++++|...+.
T Consensus       148 ~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~  188 (360)
T PRK06489        148 EG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQ  188 (360)
T ss_pred             Hh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccC
Confidence            43  2235774 899999999999998 899999999987654

>PRK10115 protease 2; Provisional

Probab=98.47  E-value=2.4e-05  Score=88.37  Aligned_cols=220  Identities=10%  Similarity=0.016  Sum_probs=127.4

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~  270 (623)
                      .......|||||++|+|..+..+.    ...+|+++|+.+|... ...+. +..  ....|++||+.|+|...++..  .
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~----E~~~l~v~d~~tg~~l-~~~i~-~~~--~~~~w~~D~~~~~y~~~~~~~--~  196 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSR----RQYGIRFRNLETGNWY-PELLD-NVE--PSFVWANDSWTFYYVRKHPVT--L  196 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCc----EEEEEEEEECCCCCCC-Ccccc-Ccc--eEEEEeeCCCEEEEEEecCCC--C
Confidence            456678899999999998664433    3488999999988621 12222 222  347899999999999864311  0


Q ss_pred             CceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee-CCCCc-EEEEEeCCCCeeeEEEEe--cCCCeEEEEeecccc
Q 006979          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW-SSKGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSLDAE  346 (623)
Q Consensus       271 ~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-s~DG~-l~~~~~~~~g~~~L~~~d--~~~~~~~~l~~~~~~  346 (623)
                      ...+||+.++.++.. ....++.+.+..    ..-..| +.|++ +++.+.. .....++.++  ..+++.+.+.+...+
T Consensus       197 ~~~~v~~h~lgt~~~-~d~lv~~e~~~~----~~~~~~~s~d~~~l~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~  270 (686)
T PRK10115        197 LPYQVWRHTIGTPAS-QDELVYEEKDDT----FYVSLHKTTSKHYVVIHLAS-ATTSEVLLLDAELADAEPFVFLPRRKD  270 (686)
T ss_pred             CCCEEEEEECCCChh-HCeEEEeeCCCC----EEEEEEEcCCCCEEEEEEEC-CccccEEEEECcCCCCCceEEEECCCC
Confidence            236799999987621 123444443311    111234 34888 5543333 3334566555  333444444432211


Q ss_pred             cccccccccCcceeEEeecCCCCEEEEEEEEC-CeEEEEEEeCC-CCceeecccC--CcceEeeeecCCEEEEEEecCCC
Q 006979          347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDF-GHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVE  422 (623)
Q Consensus       347 ~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~-g~~~L~~~d~~-~~~~~~lt~~--~~~v~~~~~~~~~~~~~~~s~~~  422 (623)
                      .          .+.+..   .++.+|+.++.+ ...+|+.+++. .++++.|-.+  ...+..+...++.+++..... .
T Consensus       271 ~----------~~~~~~---~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~-g  336 (686)
T PRK10115        271 H----------EYSLDH---YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQR-G  336 (686)
T ss_pred             C----------EEEEEe---CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeC-C
Confidence            1          111111   456777777653 46678888887 4566666554  234666655577777766543 3


Q ss_pred             CCeEEEEEcCCCcceeee
Q 006979          423 PSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       423 ~~~ly~~~l~~~~~~~lt  440 (623)
                      ..+++.+++.+++.+.|+
T Consensus       337 ~~~l~~~~~~~~~~~~l~  354 (686)
T PRK10115        337 LTSLRQINRKTREVIGIA  354 (686)
T ss_pred             EEEEEEEcCCCCceEEec
Confidence            346888887766655544

>PRK07581 hypothetical protein; Validated

Probab=98.45  E-value=6.2e-07  Score=93.28  Aligned_cols=109  Identities=16%  Similarity=0.113  Sum_probs=67.7

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHh---HHHHcCceEEEEECCCCCCCCchhHHH---hhccCCccchH-HHHHHHHHHHH
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSI---QYWTSRGWAFVDVNYGGSTGYGREFRE---RLLGRWGIVDV-NDCCSCATFLV  566 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~---~~~a~~G~~v~~~d~rGs~~~g~~~~~---~~~~~~g~~~~-~D~~~~~~~l~  566 (623)
                      ..|+||++||.++....  +....   ..|...+|.|+++|+||.|.+......   .....+..... +|+.+....+.
T Consensus        40 ~~~~vll~~~~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  117 (339)
T PRK07581         40 KDNAILYPTWYSGTHQD--NEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLT  117 (339)
T ss_pred             CCCEEEEeCCCCCCccc--chhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHH
Confidence            45778888877433222  22221   356667999999999997654322100   00011111123 45554444454


Q ss_pred             h-CCCCCCCce-EEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          567 G-SGKADEKRL-CITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       567 ~-~~~~d~~rv-~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      + .+   .+++ .|+|+||||++++.++ .||++++..|..++.
T Consensus       118 ~~lg---i~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~  158 (339)
T PRK07581        118 EKFG---IERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGT  158 (339)
T ss_pred             HHhC---CCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecC
Confidence            4 33   3684 7899999999999999 899999999988654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.44  E-value=0.00026  Score=72.96  Aligned_cols=148  Identities=14%  Similarity=0.093  Sum_probs=83.9

Q ss_pred             CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCc------
Q 006979          162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNI------  233 (623)
Q Consensus       162 ~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~--g~~------  233 (623)
                      +..|.+.++|...   +...|..+...-..+..|..|++|+++|+++-|-...     ....+..|..+  |+.      
T Consensus        78 D~sG~vRIWdtt~---~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-----fg~~F~~DSG~SvGei~GhSr~  149 (603)
T KOG0318|consen   78 DVSGKVRIWDTTQ---KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-----FGHVFLWDSGNSVGEITGHSRR  149 (603)
T ss_pred             CCcCcEEEEeccC---cceeeeeeeeecccccccceeCCCCcEEEEEecCccc-----eeEEEEecCCCccceeecccee
Confidence            3456688887642   2333333211113567899999999999998764321     23344444322  110      


Q ss_pred             ---------ccceecccC----------------------CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC
Q 006979          234 ---------QEPKVLVSG----------------------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE  282 (623)
Q Consensus       234 ---------~~~~~l~~~----------------------~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~  282 (623)
                               .+-|.++.+                      ..|+...++||||++.+-+..|.        .++++|=.+
T Consensus       150 ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg--------ki~iyDGkt  221 (603)
T KOG0318|consen  150 INSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG--------KIYIYDGKT  221 (603)
T ss_pred             EeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc--------cEEEEcCCC
Confidence                     001111211                      23566778999999887666443        488888666


Q ss_pred             CCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEe
Q 006979          283 NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d  331 (623)
                      ++   ..-.+.+.+ .-.+++....|+||++ ++-++..  ...+||-+.
T Consensus       222 ge---~vg~l~~~~-aHkGsIfalsWsPDs~~~~T~SaD--kt~KIWdVs  265 (603)
T KOG0318|consen  222 GE---KVGELEDSD-AHKGSIFALSWSPDSTQFLTVSAD--KTIKIWDVS  265 (603)
T ss_pred             cc---EEEEecCCC-CccccEEEEEECCCCceEEEecCC--ceEEEEEee
Confidence            53   223333322 3337888999999999 5544433  455666443

>PLN02679 hydrolase, alpha/beta fold family protein

Probab=98.41  E-value=5.1e-07  Score=94.59  Aligned_cols=100  Identities=15%  Similarity=0.146  Sum_probs=66.0

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+..  ...|...+..|++ +|.|+.+|+||.|.....     .. . ....++..+.+..++++  ...++
T Consensus        89 p~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~-----~~-~-~~~~~~~a~~l~~~l~~--l~~~~  156 (360)
T PLN02679         89 PPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLGFGASDKP-----PG-F-SYTMETWAELILDFLEE--VVQKP  156 (360)
T ss_pred             CeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCC-----CC-c-cccHHHHHHHHHHHHHH--hcCCC
Confidence            678999998543  3356666777765 799999999996654321     00 0 11233333333222222  12369


Q ss_pred             eEEEEcChHHHHHHHHh-c-CCCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-A-FRDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~-~~~~f~a~v~~~g~  607 (623)
                      +.++|||+||++++.++ . +|++++++|...+.
T Consensus       157 ~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~  190 (360)
T PLN02679        157 TVLIGNSVGSLACVIAASESTRDLVRGLVLLNCA  190 (360)
T ss_pred             eEEEEECHHHHHHHHHHHhcChhhcCEEEEECCc
Confidence            99999999999998766 3 69999999988754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.41  E-value=1.1e-05  Score=76.26  Aligned_cols=119  Identities=11%  Similarity=0.114  Sum_probs=73.5

Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~  245 (623)
                      .||.++....  ....+.-..   .....+++|+|+|++++.+....+       ..+.++|+++..   +..+.  ...
T Consensus        40 ~l~~~~~~~~--~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~-------~~v~lyd~~~~~---i~~~~--~~~  102 (194)
T PF08662_consen   40 ELFYLNEKNI--PVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMP-------AKVTLYDVKGKK---IFSFG--TQP  102 (194)
T ss_pred             EEEEEecCCC--ccceeeccC---CCceEEEEECcCCCEEEEEEccCC-------cccEEEcCcccE---eEeec--CCC
Confidence            4888877654  344443220   223778999999999887754321       346666776433   33332  333


Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~  315 (623)
                      .+...|||+|++|+......     ..+.|.++|....     ..+.....    .......|+|||+.+
T Consensus       103 ~n~i~wsP~G~~l~~~g~~n-----~~G~l~~wd~~~~-----~~i~~~~~----~~~t~~~WsPdGr~~  158 (194)
T PF08662_consen  103 RNTISWSPDGRFLVLAGFGN-----LNGDLEFWDVRKK-----KKISTFEH----SDATDVEWSPDGRYL  158 (194)
T ss_pred             ceEEEECCCCCEEEEEEccC-----CCcEEEEEECCCC-----EEeecccc----CcEEEEEEcCCCCEE
Confidence            45678999999999876432     2456888898754     22222222    345688999999933

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.41  E-value=2.3e-05  Score=74.18  Aligned_cols=150  Identities=13%  Similarity=0.138  Sum_probs=88.3

Q ss_pred             cceeeCCCCCEEEEEEecc-CCC--CCCceeEEEEEEcCCCCcccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979          194 ADGIFDPRFNRYVTVREDR-RQD--ALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMP  269 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~~-~~~--~~~~~~~L~~idl~~g~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p  269 (623)
                      .++.|+|+|++|++..... ...  .......||.++..+..   ...+.- ....+...+|||+|++++.+....+   
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~---   82 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIELKKEGPIHDVAWSPNGNEFAVIYGSMP---   82 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeeccCCCceEEEEECcCCCEEEEEEccCC---
Confidence            3577999999998876622 211  11235789999887765   444432 2223667899999999998864332   


Q ss_pred             CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccc
Q 006979          270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFS  348 (623)
Q Consensus       270 ~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~  348 (623)
                         ..+.++|++..    ....+..      .....+.|+|+|++++++..++-...|..+|..+.+  .+.. +.....
T Consensus        83 ---~~v~lyd~~~~----~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~~~~~~t  147 (194)
T PF08662_consen   83 ---AKVTLYDVKGK----KIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK--KISTFEHSDAT  147 (194)
T ss_pred             ---cccEEEcCccc----EeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE--EeeccccCcEE
Confidence               14666677532    2222221      234578999999955555432223456777776443  2322 222233


Q ss_pred             cccccccCcceeEEeecCCCCEEEEEEE
Q 006979          349 RPLWVFGINSYEIIQSHGEKNLIACSYR  376 (623)
Q Consensus       349 ~~~w~~~~~~~~~l~~s~~~~~l~~~~~  376 (623)
                      ...|++            +|+.++....
T Consensus       148 ~~~WsP------------dGr~~~ta~t  163 (194)
T PF08662_consen  148 DVEWSP------------DGRYLATATT  163 (194)
T ss_pred             EEEEcC------------CCCEEEEEEe
Confidence            445554            8888776654

>PRK11071 esterase YqiA; Provisional

Probab=98.39  E-value=1.3e-06  Score=82.42  Aligned_cols=91  Identities=18%  Similarity=0.120  Sum_probs=62.2

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHc--CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~--~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      |.||++||.+.+...........++.+  .+|.|+++|.+|.   +                ++..+.++.+.++.  +.
T Consensus         2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~---~----------------~~~~~~l~~l~~~~--~~   60 (190)
T PRK11071          2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPY---P----------------ADAAELLESLVLEH--GG   60 (190)
T ss_pred             CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCC---H----------------HHHHHHHHHHHHHc--CC
Confidence            679999998544443222234455655  3799999999973   2                23444555555442  23


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      +++.++|+|+||++++.++ .+|.  + +|..+|..+.
T Consensus        61 ~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~   95 (190)
T PRK11071         61 DPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRP   95 (190)
T ss_pred             CCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCH
Confidence            6899999999999999999 7773  3 4677777774

>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]

Probab=98.38  E-value=1.7e-06  Score=85.71  Aligned_cols=103  Identities=13%  Similarity=0.093  Sum_probs=70.9

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHH-HHHhCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~  574 (623)
                      +-||++||..  .....|.....-+++ ...|.++|..|.|.   +.+....-+.-.. ..-+++.++ |-.+++ +  +
T Consensus        91 ~plVliHGyG--Ag~g~f~~Nf~~La~-~~~vyaiDllG~G~---SSRP~F~~d~~~~-e~~fvesiE~WR~~~~-L--~  160 (365)
T KOG4409|consen   91 TPLVLIHGYG--AGLGLFFRNFDDLAK-IRNVYAIDLLGFGR---SSRPKFSIDPTTA-EKEFVESIEQWRKKMG-L--E  160 (365)
T ss_pred             CcEEEEeccc--hhHHHHHHhhhhhhh-cCceEEecccCCCC---CCCCCCCCCcccc-hHHHHHHHHHHHHHcC-C--c
Confidence            4466799973  333344455666766 89999999999554   4333333222222 234555555 555565 3  5


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.|+|||+|||++...+ .||++++-.|...|..
T Consensus       161 KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~G  195 (365)
T KOG4409|consen  161 KMILVGHSFGGYLAAKYALKYPERVEKLILVSPWG  195 (365)
T ss_pred             ceeEeeccchHHHHHHHHHhChHhhceEEEecccc
Confidence            999999999999999888 9999999999888864

>PLN03084 alpha/beta hydrolase fold protein; Provisional

Probab=98.37  E-value=1.9e-06  Score=90.28  Aligned_cols=105  Identities=11%  Similarity=0.022  Sum_probs=72.3

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|.||++||.+..  ...|...+..|++ +|.|+++|++|.|.......    ........+++...+..++++-  ..+
T Consensus       127 ~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~----~~~~~ys~~~~a~~l~~~i~~l--~~~  197 (383)
T PLN03084        127 NPPVLLIHGFPSQ--AYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQP----GYGFNYTLDEYVSSLESLIDEL--KSD  197 (383)
T ss_pred             CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCcc----cccccCCHHHHHHHHHHHHHHh--CCC
Confidence            3689999998543  3356666777765 79999999999665433210    0001223455555444444431  236


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.|+|+|+||.+++.++ .+|++++++|...+..
T Consensus       198 ~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~  232 (383)
T PLN03084        198 KVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL  232 (383)
T ss_pred             CceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence            899999999999999888 8899999999998764

>TIGR03230 lipo_lipase lipoprotein lipase

Probab=98.35  E-value=2e-06  Score=90.42  Aligned_cols=110  Identities=8%  Similarity=-0.026  Sum_probs=73.6

Q ss_pred             CCCEEEEecCCCCCcccCcCCH-HhHHHHc--CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNL-SIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~-~~~~~a~--~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      ..|++|++||.........|.. ..+.|..  ..|.|+++|.+|.+...  |..+..  .-....+++.+.+++|.++..
T Consensus        40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~--y~~a~~--~t~~vg~~la~lI~~L~~~~g  115 (442)
T TIGR03230        40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQH--YPTSAA--YTKLVGKDVAKFVNWMQEEFN  115 (442)
T ss_pred             CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCC--Cccccc--cHHHHHHHHHHHHHHHHHhhC
Confidence            3578999999854322223332 3334432  36999999999854321  111111  111223567778888876534


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ++.++|.++|||+||+++..++ .++.++..++...|.
T Consensus       116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA  153 (442)
T TIGR03230       116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA  153 (442)
T ss_pred             CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence            6789999999999999999988 678889999988775

Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.

>PRK08775 homoserine O-acetyltransferase; Provisional

Probab=98.32  E-value=2.4e-06  Score=89.03  Aligned_cols=78  Identities=14%  Similarity=0.138  Sum_probs=51.3

Q ss_pred             HHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc-eEEEEcChHHHHHHHHh-cCCC
Q 006979          519 YWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAAL-AFRD  596 (623)
Q Consensus       519 ~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r-v~i~G~S~GG~~~~~~~-~~~~  596 (623)
                      .|...+|.|+.+|+||.|+..       ...+   ..+|..+.+..+++.  .+-++ +.++||||||++++.++ .+|+
T Consensus        94 ~L~~~~~~Vi~~Dl~G~g~s~-------~~~~---~~~~~a~dl~~ll~~--l~l~~~~~lvG~SmGG~vA~~~A~~~P~  161 (343)
T PRK08775         94 ALDPARFRLLAFDFIGADGSL-------DVPI---DTADQADAIALLLDA--LGIARLHAFVGYSYGALVGLQFASRHPA  161 (343)
T ss_pred             ccCccccEEEEEeCCCCCCCC-------CCCC---CHHHHHHHHHHHHHH--cCCCcceEEEEECHHHHHHHHHHHHChH
Confidence            354568999999999854321       1111   123333333333332  12235 57999999999999998 8999


Q ss_pred             ceeEEEecccCC
Q 006979          597 TFKAGASLYGVS  608 (623)
Q Consensus       597 ~f~a~v~~~g~~  608 (623)
                      ++++.|...+..
T Consensus       162 ~V~~LvLi~s~~  173 (343)
T PRK08775        162 RVRTLVVVSGAH  173 (343)
T ss_pred             hhheEEEECccc
Confidence            999999887653

>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases

Probab=98.30  E-value=1.1e-06  Score=85.13  Aligned_cols=116  Identities=19%  Similarity=0.155  Sum_probs=60.8

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhH-HHHcCceEEEEECCCC---CCCCch---hHHHhhccCC-ccchHHHHH----
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQ-YWTSRGWAFVDVNYGG---STGYGR---EFRERLLGRW-GIVDVNDCC----  559 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~-~~a~~G~~v~~~d~rG---s~~~g~---~~~~~~~~~~-g~~~~~D~~----  559 (623)
                      ++..|+||++||.....  ..+..... ........++.++-+-   ....|.   .|.+...... ...+.+++.    
T Consensus        11 ~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~   88 (216)
T PF02230_consen   11 GKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAE   88 (216)
T ss_dssp             ST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHH
Confidence            56789999999984332  22222222 2234567777776432   001122   4433211111 112233333    


Q ss_pred             ---HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          560 ---SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       560 ---~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                         +.++...+.+ +|++||++.|+|.||.+++.++ ++|..|+++|+++|..-.
T Consensus        89 ~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~  142 (216)
T PF02230_consen   89 RLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPP  142 (216)
T ss_dssp             HHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TT
T ss_pred             HHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccc
Confidence               3333334455 8999999999999999999999 899999999999997543

; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.28  E-value=0.00069  Score=80.26  Aligned_cols=263  Identities=14%  Similarity=0.108  Sum_probs=134.9

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCC-C-Ccc------ceeeeecCCceEEEe--CCEE
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-E-YAV------RTTAQEYGGGAFRIF--GDTV  157 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~-~-~~~------r~~~~~~g~~~~~~s--~d~l  157 (623)
                      ..++.+.+++ ++.+|..+..   .+|  +++++..  +.....+.. . .+.      ...+..  -...+++  ++.|
T Consensus       568 ~~P~gvavd~~~g~lyVaDs~---n~r--I~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~--P~GIavd~~gn~L  638 (1057)
T PLN02919        568 KFPGKLAIDLLNNRLFISDSN---HNR--IVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNR--PQGLAYNAKKNLL  638 (1057)
T ss_pred             CCCceEEEECCCCeEEEEECC---CCe--EEEEeCC--CCEEEEEccCCCcCCCCCchhccccCC--CcEEEEeCCCCEE
Confidence            3456788887 7888887743   244  4555544  222211111 0 000      001111  1223444  3457


Q ss_pred             EEEeCCCCcEEEEeCCCCCCCceecCCCC-------CC-C-----CeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          158 IFSNYKDQRLYKHSIDSKDSSPLPITPDY-------GE-P-----LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~-------~~-~-----~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      |+.+...++|.++|+.++  ..+.+....       +. .     ...-.+.+++|++..+++.....        +.|+
T Consensus       639 YVaDt~n~~Ir~id~~~~--~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~--------~~I~  708 (1057)
T PLN02919        639 YVADTENHALREIDFVNE--TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ--------HQIW  708 (1057)
T ss_pred             EEEeCCCceEEEEecCCC--EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC--------CeEE
Confidence            777666667888998765  444443210       00 0     01123567899666665544322        6689


Q ss_pred             EEEcCCCCcccceecccCC---------------CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeee
Q 006979          225 AIALNGQNIQEPKVLVSGS---------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR  289 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~---------------~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~  289 (623)
                      ++|..++.   ...+....               ....+.+++|||++|++....       ..+|.++|+++++.    
T Consensus       709 v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------n~~Irv~D~~tg~~----  774 (1057)
T PLN02919        709 EYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------SSSIRALDLKTGGS----  774 (1057)
T ss_pred             EEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-------CCeEEEEECCCCcE----
Confidence            99987765   33322110               112235699999988776432       34689999876531    


Q ss_pred             EEEcCCCC------------------CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc-cccc-c
Q 006979          290 VCVAGFDP------------------TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AEFS-R  349 (623)
Q Consensus       290 ~~~~~~~~------------------~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-~~~~-~  349 (623)
                      .++.+.++                  .....+..+.+++||+ +|+++.  +..+|.++|++++....+.... ..+. +
T Consensus       775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG  851 (1057)
T PLN02919        775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDG  851 (1057)
T ss_pred             EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCC
Confidence            11111000                  0001345677899996 456665  5667889999888766554211 0000 0


Q ss_pred             cc---ccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce
Q 006979          350 PL---WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (623)
Q Consensus       350 ~~---w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~  393 (623)
                      ..   -......+.+.   ++| .+|++.  .+...|.++|+++++.
T Consensus       852 ~~~~a~l~~P~GIavd---~dG-~lyVaD--t~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        852 KALKAQLSEPAGLALG---ENG-RLFVAD--TNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cccccccCCceEEEEe---CCC-CEEEEE--CCCCEEEEEECCCCcc
Confidence            00   00011233443   244 466654  3344577778877654

>PRK00175 metX homoserine O-acetyltransferase; Provisional

Probab=98.27  E-value=3.4e-06  Score=89.06  Aligned_cols=112  Identities=13%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             CCEEEEecCCCCCcccCc-----------CCHHh---HHHHcCceEEEEECCCCC-CCC-chhHHHh-----hccCCccc
Q 006979          495 PPLLVKSHGGPTSEARGI-----------LNLSI---QYWTSRGWAFVDVNYGGS-TGY-GREFRER-----LLGRWGIV  553 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~-----------~~~~~---~~~a~~G~~v~~~d~rGs-~~~-g~~~~~~-----~~~~~g~~  553 (623)
                      .|.||++||.+.......           |...+   ..+...+|.|+++|++|. ++. +......     ...++...
T Consensus        48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~  127 (379)
T PRK00175         48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI  127 (379)
T ss_pred             CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence            478999999965543211           22221   123356899999999983 221 2110000     00011234


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCc-eEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          554 DVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       554 ~~~D~~~~~~~l~~~~~~d~~r-v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .++|..+.+..+++.-  +.++ +.++|+||||.+++.++ .+|++++++|...+..
T Consensus       128 ~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~  182 (379)
T PRK00175        128 TIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSA  182 (379)
T ss_pred             CHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCc
Confidence            5667666666655542  2357 48999999999999988 8999999999887653

>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]

Probab=98.26  E-value=3.2e-06  Score=80.69  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=79.7

Q ss_pred             CCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcC-ceEEEEECCCC
Q 006979          456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGG  534 (623)
Q Consensus       456 ~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~-G~~v~~~d~rG  534 (623)
                      .++.+.+.+.++.. ++ ++..++-.|..        ..-|++++.|||..  ..-.|...++.+.++ -..|+++|.||
T Consensus        45 ~yFdekedv~i~~~-~~-t~n~Y~t~~~~--------t~gpil~l~HG~G~--S~LSfA~~a~el~s~~~~r~~a~DlRg  112 (343)
T KOG2564|consen   45 DYFDEKEDVSIDGS-DL-TFNVYLTLPSA--------TEGPILLLLHGGGS--SALSFAIFASELKSKIRCRCLALDLRG  112 (343)
T ss_pred             HhhccccccccCCC-cc-eEEEEEecCCC--------CCccEEEEeecCcc--cchhHHHHHHHHHhhcceeEEEeeccc
Confidence            44556677777664 33 56666666642        33589999999943  334666677777653 56779999999


Q ss_pred             CCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       535 s~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      .|+.--+-...+.   ......|+.+.++++...   ++..|.++||||||.++...+
T Consensus       113 HGeTk~~~e~dlS---~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a  164 (343)
T KOG2564|consen  113 HGETKVENEDDLS---LETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTA  164 (343)
T ss_pred             cCccccCChhhcC---HHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhh
Confidence            6653222111111   123467888888888744   246799999999999998777

>PRK05855 short chain dehydrogenase; Validated

Probab=98.23  E-value=5.7e-06  Score=92.75  Aligned_cols=113  Identities=12%  Similarity=0.134  Sum_probs=68.9

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++.+.+.+          ...|.||++||.+..  ...|......| .+||.|+.+|+||.|.+....   ....+
T Consensus        11 ~g~~l~~~~~g~----------~~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~---~~~~~   74 (582)
T PRK05855         11 DGVRLAVYEWGD----------PDRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRGAGRSSAPK---RTAAY   74 (582)
T ss_pred             CCEEEEEEEcCC----------CCCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCCCCCCCCCC---ccccc
Confidence            788888665532          124789999998533  34566677777 678999999999976543211   00111


Q ss_pred             c-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEec
Q 006979          551 G-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASL  604 (623)
Q Consensus       551 g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~  604 (623)
                      . ....+|+.+.++.+.    . ..++.++|||+||.+++.++..   ++.+...+..
T Consensus        75 ~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~  127 (582)
T PRK05855         75 TLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSV  127 (582)
T ss_pred             CHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheec
Confidence            1 112344555554431    1 2349999999999999877733   3444444433

>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]

Probab=98.22  E-value=6e-06  Score=75.81  Aligned_cols=138  Identities=16%  Similarity=0.163  Sum_probs=99.0

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY  538 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~  538 (623)
                      ..++.|.++.. .+..+.+.+..-.          ..-++|++||.-.....-.+...+..+++.||.++.+|++|.|++
T Consensus         8 ~~~~~ivi~n~-~ne~lvg~lh~tg----------s~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS   76 (269)
T KOG4667|consen    8 QIAQKIVIPNS-RNEKLVGLLHETG----------STEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGES   76 (269)
T ss_pred             eeeeEEEeccC-CCchhhcceeccC----------CceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCc
Confidence            35667777776 6666666555332          235899999983222222334678889999999999999998887


Q ss_pred             chhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhh
Q 006979          539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISE  615 (623)
Q Consensus       539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~  615 (623)
                      ...|.-   + .+..+.+|+..+++++.....+   --+|+|||-||-+++..+ .+++ ..-+|..+|-.|+.....
T Consensus        77 ~gsf~~---G-n~~~eadDL~sV~q~~s~~nr~---v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~  146 (269)
T KOG4667|consen   77 EGSFYY---G-NYNTEADDLHSVIQYFSNSNRV---VPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGIN  146 (269)
T ss_pred             CCcccc---C-cccchHHHHHHHHHHhccCceE---EEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchh
Confidence            665542   2 2234679999999999875322   237999999999999888 6665 677788899888876654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.22  E-value=0.00011  Score=74.52  Aligned_cols=202  Identities=12%  Similarity=0.099  Sum_probs=117.6

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCC--ceEEEeCCEEEEEeCCCCc
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIFGDTVIFSNYKDQR  166 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~--~~~~~s~d~l~f~~~~~~~  166 (623)
                      ..+..+.+.|...+.-+.+.   +++..|+..+-    +.-..+..-     .+..+.+  ..|.+.+..++|+.....-
T Consensus       214 ~~I~sv~FHp~~plllvaG~---d~~lrifqvDG----k~N~~lqS~-----~l~~fPi~~a~f~p~G~~~i~~s~rrky  281 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGL---DGTLRIFQVDG----KVNPKLQSI-----HLEKFPIQKAEFAPNGHSVIFTSGRRKY  281 (514)
T ss_pred             CCceEEEecCCCceEEEecC---CCcEEEEEecC----ccChhheee-----eeccCccceeeecCCCceEEEecccceE
Confidence            34567777775556656544   47777776652    221122110     0001112  2344444457777666666


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcc
Q 006979          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY  246 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~  246 (623)
                      +|.+|+.+.  +..+|.+..+.+......+..||++++|+..-.+         +.|+++...+++.  +.. ..-.+.+
T Consensus       282 ~ysyDle~a--k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---------G~I~lLhakT~el--i~s-~KieG~v  347 (514)
T KOG2055|consen  282 LYSYDLETA--KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAKTKEL--ITS-FKIEGVV  347 (514)
T ss_pred             EEEeecccc--ccccccCCCCcccchhheeEecCCCCeEEEcccC---------ceEEeehhhhhhh--hhe-eeeccEE
Confidence            999999876  6777766533333345568899999988875322         6789888877762  111 1222345


Q ss_pred             cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeee
Q 006979          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN  326 (623)
Q Consensus       247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~  326 (623)
                      ....||.||+.|+...        ..+++|++|+..... ..+.+..|.     ..-...+-|.+|+++.+... .|.-+
T Consensus       348 ~~~~fsSdsk~l~~~~--------~~GeV~v~nl~~~~~-~~rf~D~G~-----v~gts~~~S~ng~ylA~GS~-~GiVN  412 (514)
T KOG2055|consen  348 SDFTFSSDSKELLASG--------GTGEVYVWNLRQNSC-LHRFVDDGS-----VHGTSLCISLNGSYLATGSD-SGIVN  412 (514)
T ss_pred             eeEEEecCCcEEEEEc--------CCceEEEEecCCcce-EEEEeecCc-----cceeeeeecCCCceEEeccC-cceEE
Confidence            6678999998776553        234799999987632 112222221     23346677889973333333 68888


Q ss_pred             EEEEe
Q 006979          327 LHKWI  331 (623)
Q Consensus       327 L~~~d  331 (623)
                      ||-.+
T Consensus       413 IYd~~  417 (514)
T KOG2055|consen  413 IYDGN  417 (514)
T ss_pred             Eeccc
Confidence            88643

>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I

Probab=98.21  E-value=1.3e-05  Score=86.83  Aligned_cols=134  Identities=13%  Similarity=0.074  Sum_probs=86.2

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC---CHHhHHHHcCceEEEEECCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---NLSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~---~~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      +|-.+.+...    .+..+-|.|....     ..+.| ||++||.-....-..+   +....+|+++||.|+++|+||-+
T Consensus       163 Tpg~VV~~~~----~~eLi~Y~P~t~~-----~~~~P-lLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg  232 (532)
T TIGR01838       163 TPGAVVFENE----LFQLIQYEPTTET-----VHKTP-LLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPD  232 (532)
T ss_pred             CCCeEEEECC----cEEEEEeCCCCCc-----CCCCc-EEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCC
Confidence            4546666543    3555667776521     12344 5668876322221122   36899999999999999999854


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHH-----HHhcC-CCceeEEEecccCCCH
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL-----AALAF-RDTFKAGASLYGVSIP  610 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~-----~~~~~-~~~f~a~v~~~g~~d~  610 (623)
                      ...+.+      .+.....+++.++++++.+.  .+.++|.++|||+||.++.     +++.+ ++++++++.+....|+
T Consensus       233 ~s~~~~------~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df  304 (532)
T TIGR01838       233 ASQADK------TFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF  304 (532)
T ss_pred             cccccC------ChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence            332211      12223345688889998865  3468999999999999852     23344 7789998888877775


Q ss_pred             H
Q 006979          611 V  611 (623)
Q Consensus       611 ~  611 (623)
                      .
T Consensus       305 ~  305 (532)
T TIGR01838       305 S  305 (532)
T ss_pred             C
Confidence            4

This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.

>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold

Probab=98.19  E-value=3.1e-05  Score=74.91  Aligned_cols=104  Identities=15%  Similarity=0.085  Sum_probs=72.8

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~  571 (623)
                      +.+..+||-+||.|++..  .|.+..+.|.+.|+.++.+||+|.+-.....    ...+..   .+-..-+..|.++=.+
T Consensus        32 gs~~gTVv~~hGsPGSH~--DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~----~~~~~n---~er~~~~~~ll~~l~i  102 (297)
T PF06342_consen   32 GSPLGTVVAFHGSPGSHN--DFKYIRPPLDEAGIRFIGINYPGFGFTPGYP----DQQYTN---EERQNFVNALLDELGI  102 (297)
T ss_pred             CCCceeEEEecCCCCCcc--chhhhhhHHHHcCeEEEEeCCCCCCCCCCCc----ccccCh---HHHHHHHHHHHHHcCC
Confidence            555679999999997765  7888899999999999999999966432211    111222   2233334444444345


Q ss_pred             CCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      + +++..+|||.|+-.++.++ ++|  ..+.+.+.|+
T Consensus       103 ~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~  136 (297)
T PF06342_consen  103 K-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP  136 (297)
T ss_pred             C-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence            4 8999999999999999999 776  3466665553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.18  E-value=0.0017  Score=66.63  Aligned_cols=111  Identities=7%  Similarity=-0.109  Sum_probs=67.4

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC--CceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELWVGYISENGDVYKRVCVAGFDPT  298 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~--~~~~L~v~d~~~~~~~~~~~~~~~~~~~  298 (623)
                      ++++++|.++++.  ...+..+. .-.. ..||||+.||....-.+...+  ....|-++|..+...  ...+..+.++.
T Consensus        27 ~~v~ViD~~~~~v--~g~i~~G~-~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p~  100 (352)
T TIGR02658        27 TQVYTIDGEAGRV--LGMTDGGF-LPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGPR  100 (352)
T ss_pred             ceEEEEECCCCEE--EEEEEccC-CCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCch
Confidence            7899999998872  23333332 2222 499999999877641111111  134588889888743  22222222111


Q ss_pred             c--cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE
Q 006979          299 I--VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       299 ~--~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~  338 (623)
                      .  .........+|||+.+|+++. +....+-++|+.+++..
T Consensus       101 ~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~~kvv  141 (352)
T TIGR02658       101 FLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEGKAFV  141 (352)
T ss_pred             hhccCccceEEECCCCCEEEEecC-CCCCEEEEEECCCCcEE
Confidence            0  023457889999997777776 45667889999888744

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases

Probab=98.17  E-value=5.6e-06  Score=83.54  Aligned_cols=96  Identities=23%  Similarity=0.262  Sum_probs=67.2

Q ss_pred             HHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh-CCCCCCCceEEEEcChHHHHHHHHh-
Q 006979          515 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG-SGKADEKRLCITGGSAGGYTTLAAL-  592 (623)
Q Consensus       515 ~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~-~~~~d~~rv~i~G~S~GG~~~~~~~-  592 (623)
                      ...+.|.++||+|+++||-|-+.   .|..   +.-....+-|.+.|++.+.. .+.-...+|+++|+|.||+.+++++ 
T Consensus        17 ~~l~~~L~~GyaVv~pDY~Glg~---~y~~---~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~   90 (290)
T PF03583_consen   17 PFLAAWLARGYAVVAPDYEGLGT---PYLN---GRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE   90 (290)
T ss_pred             HHHHHHHHCCCEEEecCCCCCCC---cccC---cHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence            45677889999999999998554   4422   11112234455555554444 2433347999999999999999877 


Q ss_pred             c---C-CCc---eeEEEecccCCCHHHhhhh
Q 006979          593 A---F-RDT---FKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       593 ~---~-~~~---f~a~v~~~g~~d~~~~~~~  616 (623)
                      .   + |++   +.++++..++.|+..++..
T Consensus        91 l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~  121 (290)
T PF03583_consen   91 LAPSYAPELNRDLVGAAAGGPPADLAALLRA  121 (290)
T ss_pred             HhHHhCcccccceeEEeccCCccCHHHHHhc
Confidence            2   2 665   7999999999999887654

Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process

>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases

Probab=98.16  E-value=4.2e-05  Score=71.92  Aligned_cols=136  Identities=11%  Similarity=0.070  Sum_probs=83.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|+.|+.|--.|++..     .++.|.||+.-|.  +.....|...+.|++..||.|+.+|.-..-|  .+-.. +..-.
T Consensus        11 ~~~~I~vwet~P~~~~-----~~~~~tiliA~Gf--~rrmdh~agLA~YL~~NGFhViRyDsl~HvG--lSsG~-I~eft   80 (294)
T PF02273_consen   11 DGRQIRVWETRPKNNE-----PKRNNTILIAPGF--ARRMDHFAGLAEYLSANGFHVIRYDSLNHVG--LSSGD-INEFT   80 (294)
T ss_dssp             TTEEEEEEEE---TTS--------S-EEEEE-TT---GGGGGGHHHHHHHHTTT--EEEE---B----------------
T ss_pred             CCCEEEEeccCCCCCC-----cccCCeEEEecch--hHHHHHHHHHHHHHhhCCeEEEecccccccc--CCCCC-hhhcc
Confidence            7999999999998743     4567999999887  4445577789999999999999998543111  11000 11111


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCHHHhhhhcccc
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELWSI  620 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~  620 (623)
                      -..-.+|+..+++||.+.|   ..+++++-.|.-|-+++..+...+ ..-.|...|++|+..-++..+++
T Consensus        81 ms~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~i~-lsfLitaVGVVnlr~TLe~al~~  146 (294)
T PF02273_consen   81 MSIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAADIN-LSFLITAVGVVNLRDTLEKALGY  146 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS---SEEEEES--S-HHHHHHHHHSS
T ss_pred             hHHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhccC-cceEEEEeeeeeHHHHHHHHhcc
Confidence            1123578999999999887   468999999999999999996654 67778888999998877766554

Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.

>COG4757 Predicted alpha/beta hydrolase [General function prediction only]

Probab=98.16  E-value=3.8e-06  Score=78.01  Aligned_cols=120  Identities=13%  Similarity=0.037  Sum_probs=79.2

Q ss_pred             EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHH
Q 006979          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR  543 (623)
Q Consensus       464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~  543 (623)
                      ..++.+ ||..+.+..|+..+         +.+-.+.+-|++ +.....+...++..+.+||.|+..||||.++.-..-.
T Consensus         8 ~~l~~~-DG~~l~~~~~pA~~---------~~~g~~~va~a~-Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~   76 (281)
T COG4757           8 AHLPAP-DGYSLPGQRFPADG---------KASGRLVVAGAT-GVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASL   76 (281)
T ss_pred             cccccC-CCccCccccccCCC---------CCCCcEEecccC-CcchhHhHHHHHHhhccCceEEEEecccccCCCcccc
Confidence            667777 89988887775433         122223334443 2333356678888999999999999999877543322


Q ss_pred             HhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCC
Q 006979          544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD  596 (623)
Q Consensus       544 ~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~  596 (623)
                      ....-.+-.....|+-++++++.+.-  ..-....+|||+||.+...+..++.
T Consensus        77 ~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~~~k  127 (281)
T COG4757          77 SGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQHPK  127 (281)
T ss_pred             ccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccccCcc
Confidence            21111122223678999999998742  2346788999999999888777773

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding

Probab=98.15  E-value=1.4e-05  Score=98.63  Aligned_cols=109  Identities=12%  Similarity=0.089  Sum_probs=72.3

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      ..|.||++||.+...  ..|......|.+ +|.|+.+|+||.|.+...-.............+++.+.+..++++  .+.
T Consensus      1370 ~~~~vVllHG~~~s~--~~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~--l~~ 1444 (1655)
T PLN02980       1370 EGSVVLFLHGFLGTG--EDWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH--ITP 1444 (1655)
T ss_pred             CCCeEEEECCCCCCH--HHHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH--hCC
Confidence            357899999985443  356666677755 599999999996654321000000001122345555555544443  234


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +++.++||||||.+++.++ .+|++++++|...+.
T Consensus      1445 ~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~ 1479 (1655)
T PLN02980       1445 GKVTLVGYSMGARIALYMALRFSDKIEGAVIISGS 1479 (1655)
T ss_pred             CCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCC
Confidence            7999999999999999988 899999999887654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.15  E-value=0.0014  Score=64.98  Aligned_cols=224  Identities=13%  Similarity=-0.005  Sum_probs=120.7

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++|......-++++|..++ .....+...  ....+|....|||||++|+ +.|+..+.   ....|-++|...+    
T Consensus        19 avafaRRPG~~~~v~D~~~g-~~~~~~~a~--~gRHFyGHg~fs~dG~~Ly-tTEnd~~~---g~G~IgVyd~~~~----   87 (305)
T PF07433_consen   19 AVAFARRPGTFALVFDCRTG-QLLQRLWAP--PGRHFYGHGVFSPDGRLLY-TTENDYET---GRGVIGVYDAARG----   87 (305)
T ss_pred             EEEEEeCCCcEEEEEEcCCC-ceeeEEcCC--CCCEEecCEEEcCCCCEEE-EeccccCC---CcEEEEEEECcCC----
Confidence            45665543445889999887 344455543  2346778899999998665 55544221   3478999999843    


Q ss_pred             ceecccCCCccc---ceeeCCCCCEEEEEEe---cCCC-----C--CCCceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979          236 PKVLVSGSDFYA---FPRMDPRGERMAWIEW---HHPN-----M--PWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (623)
Q Consensus       236 ~~~l~~~~~~~~---~p~wSPDG~~la~~~~---~~~~-----~--p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~  302 (623)
                      .+.+.+-..+-.   ...|.|||+.|+...-   .+|+     +  +-=...|..+|..++..+++. .+....  -..+
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~-~Lp~~~--~~lS  164 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV-ELPPDL--HQLS  164 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee-ecCccc--cccc
Confidence            333432222212   2469999999986631   1211     0  000234666776666433332 232222  1157


Q ss_pred             CcCceeCCCCcEEEEEeCCCCe----ee-EEEEecCCCeEEEEeecccccccccccccC---cceeEEeecCCCCEEEEE
Q 006979          303 PTEPKWSSKGELFFVTDRKNGF----WN-LHKWIESNNEVLAIYSLDAEFSRPLWVFGI---NSYEIIQSHGEKNLIACS  374 (623)
Q Consensus       303 ~~~~~ws~DG~l~~~~~~~~g~----~~-L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~---~~~~~l~~s~~~~~l~~~  374 (623)
                      +...+|.+||.++|..+. .|.    .- |...+. ++..+.+...     ...|....   .+..+.   .+++.++++
T Consensus       165 iRHLa~~~~G~V~~a~Q~-qg~~~~~~PLva~~~~-g~~~~~~~~p-----~~~~~~l~~Y~gSIa~~---~~g~~ia~t  234 (305)
T PF07433_consen  165 IRHLAVDGDGTVAFAMQY-QGDPGDAPPLVALHRR-GGALRLLPAP-----EEQWRRLNGYIGSIAAD---RDGRLIAVT  234 (305)
T ss_pred             eeeEEecCCCcEEEEEec-CCCCCccCCeEEEEcC-CCcceeccCC-----hHHHHhhCCceEEEEEe---CCCCEEEEE
Confidence            889999999986666655 332    12 233332 2223333211     11121110   123333   266678888


Q ss_pred             EEECCeEEEEEEeCCCCceeecccCCcceEee
Q 006979          375 YRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI  406 (623)
Q Consensus       375 ~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~  406 (623)
                      +-+.+...+|  |.+++.+..... ..++..+
T Consensus       235 sPrGg~~~~~--d~~tg~~~~~~~-l~D~cGv  263 (305)
T PF07433_consen  235 SPRGGRVAVW--DAATGRLLGSVP-LPDACGV  263 (305)
T ss_pred             CCCCCEEEEE--ECCCCCEeeccc-cCceeee
Confidence            8777766655  877887754322 2345555

>COG0400 Predicted esterase [General function prediction only]

Probab=98.14  E-value=7.9e-06  Score=77.33  Aligned_cols=113  Identities=18%  Similarity=0.088  Sum_probs=71.6

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHH-------HHHHHHHH
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN-------DCCSCATF  564 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~-------D~~~~~~~  564 (623)
                      +...|+||++||-+  .....+....+...-+ +.++.++-+=.-..+..|..  ...-+..+.+       .+.+.++.
T Consensus        15 ~p~~~~iilLHG~G--gde~~~~~~~~~~~P~-~~~is~rG~v~~~g~~~~f~--~~~~~~~d~edl~~~~~~~~~~l~~   89 (207)
T COG0400          15 DPAAPLLILLHGLG--GDELDLVPLPELILPN-ATLVSPRGPVAENGGPRFFR--RYDEGSFDQEDLDLETEKLAEFLEE   89 (207)
T ss_pred             CCCCcEEEEEecCC--CChhhhhhhhhhcCCC-CeEEcCCCCccccCccccee--ecCCCccchhhHHHHHHHHHHHHHH
Confidence            45678999999983  4444444433333333 55555543322111111111  1112222333       34455666


Q ss_pred             HHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          565 LVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       565 l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      +.++..+|++|+.+.|+|.|+.+++.++ ++++.|+++|.+.|..=
T Consensus        90 ~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~  135 (207)
T COG0400          90 LAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLP  135 (207)
T ss_pred             HHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCC
Confidence            6667779999999999999999999999 89999999999988653

>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family

Probab=98.11  E-value=1.4e-05  Score=89.30  Aligned_cols=99  Identities=14%  Similarity=0.050  Sum_probs=68.2

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh-HHHh----hc--------------cCCccch
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE-FRER----LL--------------GRWGIVD  554 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~-~~~~----~~--------------~~~g~~~  554 (623)
                      ..|+||++||-.  .....|...+..|+++||.|+++|+||.|..... ....    ..              ++--.+.
T Consensus       448 g~P~VVllHG~~--g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~  525 (792)
T TIGR03502       448 GWPVVIYQHGIT--GAKENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS  525 (792)
T ss_pred             CCcEEEEeCCCC--CCHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence            468999999973  3334567788899999999999999997654221 0000    00              0011234


Q ss_pred             HHHHHHHHHHHH------hC----CCCCCCceEEEEcChHHHHHHHHhcC
Q 006979          555 VNDCCSCATFLV------GS----GKADEKRLCITGGSAGGYTTLAALAF  594 (623)
Q Consensus       555 ~~D~~~~~~~l~------~~----~~~d~~rv~i~G~S~GG~~~~~~~~~  594 (623)
                      +.|+......+.      ++    +..+..+|.++||||||.+.+..+.+
T Consensus       526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~  575 (792)
T TIGR03502       526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY  575 (792)
T ss_pred             HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence            678887777776      21    23667899999999999999988843

Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=98.10  E-value=0.002  Score=61.39  Aligned_cols=192  Identities=13%  Similarity=0.148  Sum_probs=110.3

Q ss_pred             EEEEeCCCCcEEEEeCCCCCC--CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDS--SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~--~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~  234 (623)
                      ++.+...+..|.++++.+++.  -...|...   -.-.....+|||.|++|+..+.|..       ..||.  -.+++.+
T Consensus        29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~---hkrsVRsvAwsp~g~~La~aSFD~t-------~~Iw~--k~~~efe   96 (312)
T KOG0645|consen   29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDG---HKRSVRSVAWSPHGRYLASASFDAT-------VVIWK--KEDGEFE   96 (312)
T ss_pred             EEEeecCCceEEEEecCCCCcEEEEEecccc---chheeeeeeecCCCcEEEEeeccce-------EEEee--cCCCcee
Confidence            555555565677777654311  01122221   1123456889999998888776532       23332  2334322


Q ss_pred             cceecccCCC-cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          235 EPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       235 ~~~~l~~~~~-~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      -+..| +|.+ -+-..+||++|.+||-.+.+.+        +|+..++++++..-.-++.+..    +.+....|.|--.
T Consensus        97 cv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKS--------VWiWe~deddEfec~aVL~~Ht----qDVK~V~WHPt~d  163 (312)
T KOG0645|consen   97 CVATL-EGHENEVKCVAWSASGNYLATCSRDKS--------VWIWEIDEDDEFECIAVLQEHT----QDVKHVIWHPTED  163 (312)
T ss_pred             EEeee-eccccceeEEEEcCCCCEEEEeeCCCe--------EEEEEecCCCcEEEEeeecccc----ccccEEEEcCCcc
Confidence            22223 3433 2345689999999998875554        8888888776544455566655    5678899999655


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~  385 (623)
                      |+|.... ++.-++|+-++ .+....+..-+.. ..-.|..     .|-   +.|.+++-.+ +++...||+
T Consensus       164 lL~S~SY-DnTIk~~~~~~-dddW~c~~tl~g~-~~TVW~~-----~F~---~~G~rl~s~s-dD~tv~Iw~  223 (312)
T KOG0645|consen  164 LLFSCSY-DNTIKVYRDED-DDDWECVQTLDGH-ENTVWSL-----AFD---NIGSRLVSCS-DDGTVSIWR  223 (312)
T ss_pred             eeEEecc-CCeEEEEeecC-CCCeeEEEEecCc-cceEEEE-----Eec---CCCceEEEec-CCcceEeee
Confidence            8877766 56677887665 4444433322111 1134442     222   1455555444 577778887

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=98.09  E-value=0.00042  Score=69.71  Aligned_cols=208  Identities=10%  Similarity=0.010  Sum_probs=119.8

Q ss_pred             EEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce
Q 006979          158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK  237 (623)
Q Consensus       158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~  237 (623)
                      +.+...||.+-++++++. .....|+..    ..|+...+|+|+|++|.-.+-|+.       .+||  |+.++.   .-
T Consensus       234 lat~s~Dgtvklw~~~~e-~~l~~l~gH----~~RVs~VafHPsG~~L~TasfD~t-------WRlW--D~~tk~---El  296 (459)
T KOG0272|consen  234 LATASADGTVKLWKLSQE-TPLQDLEGH----LARVSRVAFHPSGKFLGTASFDST-------WRLW--DLETKS---EL  296 (459)
T ss_pred             eeeeccCCceeeeccCCC-cchhhhhcc----hhhheeeeecCCCceeeecccccc-------hhhc--ccccch---hh
Confidence            445556777666666542 234555543    578889999999999988877653       3344  787775   33


Q ss_pred             ecccCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEE
Q 006979          238 VLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (623)
Q Consensus       238 ~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~  316 (623)
                      .+.+|. .-+...+|-|||.-++--..|.      -.+  +.|+.++.   ....+.+.-    ..+..+.|+|+|..+.
T Consensus       297 L~QEGHs~~v~~iaf~~DGSL~~tGGlD~------~~R--vWDlRtgr---~im~L~gH~----k~I~~V~fsPNGy~lA  361 (459)
T KOG0272|consen  297 LLQEGHSKGVFSIAFQPDGSLAATGGLDS------LGR--VWDLRTGR---CIMFLAGHI----KEILSVAFSPNGYHLA  361 (459)
T ss_pred             HhhcccccccceeEecCCCceeeccCccc------hhh--eeecccCc---EEEEecccc----cceeeEeECCCceEEe
Confidence            333443 3355688999999444222222      233  44777762   344555554    4567899999997443


Q ss_pred             EEeCCCCeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceee
Q 006979          317 VTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL  395 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~  395 (623)
                      .... ++..++|.+.  ... ...+......+....+++            ..+.++++..-++..+||.- .....++.
T Consensus       362 Tgs~-Dnt~kVWDLR--~r~~ly~ipAH~nlVS~Vk~~p------------~~g~fL~TasyD~t~kiWs~-~~~~~~ks  425 (459)
T KOG0272|consen  362 TGSS-DNTCKVWDLR--MRSELYTIPAHSNLVSQVKYSP------------QEGYFLVTASYDNTVKIWST-RTWSPLKS  425 (459)
T ss_pred             ecCC-CCcEEEeeec--ccccceecccccchhhheEecc------------cCCeEEEEcccCcceeeecC-CCcccchh
Confidence            3333 4666766443  222 222222222223332222            56778888888888888743 22233455


Q ss_pred             cccCCcceEee--eecCCEE
Q 006979          396 LDIPFTDIDNI--TLGNDCL  413 (623)
Q Consensus       396 lt~~~~~v~~~--~~~~~~~  413 (623)
                      |.....-|-++  ++++..+
T Consensus       426 LaGHe~kV~s~Dis~d~~~i  445 (459)
T KOG0272|consen  426 LAGHEGKVISLDISPDSQAI  445 (459)
T ss_pred             hcCCccceEEEEeccCCceE
Confidence            65555556555  4444433

>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]

Probab=98.08  E-value=4e-06  Score=93.18  Aligned_cols=128  Identities=20%  Similarity=0.228  Sum_probs=87.9

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC---cCCHHhHHHHcCceEEEEECCC-CCCCCchhHHHhhcc
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYWTSRGWAFVDVNYG-GSTGYGREFRERLLG  548 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~---~~~~~~~~~a~~G~~v~~~d~r-Gs~~~g~~~~~~~~~  548 (623)
                      ..++.-+|.|....    ..+ .|++|++|||.......   ........+..+..+|+.++|| |.-|+...-.+...+
T Consensus        95 DCLylNV~tp~~~~----~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~g  169 (545)
T KOG1516|consen   95 DCLYLNVYTPQGCS----ESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPG  169 (545)
T ss_pred             CCceEEEeccCCCc----cCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCC
Confidence            45888889997621    012 89999999995332221   1223344456678999999999 322322221122245


Q ss_pred             CCccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCC
Q 006979          549 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVS  608 (623)
Q Consensus       549 ~~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~  608 (623)
                      ++|   ..|++.|++|+.++   -.-||++|-|+|+|+||..+..++.-   ..+|+.+|+.+|..
T Consensus       170 N~g---l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~  232 (545)
T KOG1516|consen  170 NLG---LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA  232 (545)
T ss_pred             ccc---HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence            555   66999999999874   12699999999999999999877732   46899999888863

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=98.07  E-value=0.0008  Score=66.58  Aligned_cols=167  Identities=14%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             CceEEEeCC--EEEEEe--CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 006979          147 GGAFRIFGD--TVIFSN--YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (623)
Q Consensus       147 ~~~~~~s~d--~l~f~~--~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~  222 (623)
                      ..+.+++.|  .++++.  .....||+...++.   .+.+..     ...+..|+|+++|..+++...+. .      ..
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---~~~~~~-----g~~l~~PS~d~~g~~W~v~~~~~-~------~~   90 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---VRPVLT-----GGSLTRPSWDPDGWVWTVDDGSG-G------VR   90 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---ceeecc-----CCccccccccCCCCEEEEEcCCC-c------eE
Confidence            344555544  677776  44556998876543   444433     23577899999976554433221 1      22


Q ss_pred             EEEEEcCCCCcccceecccC-CC-cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC--C-c--ee-eeEEEcC
Q 006979          223 IVAIALNGQNIQEPKVLVSG-SD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN--G-D--VY-KRVCVAG  294 (623)
Q Consensus       223 L~~idl~~g~~~~~~~l~~~-~~-~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~--~-~--~~-~~~~~~~  294 (623)
                      +++ +..++... ...+... .. .+...++||||.++|++..+.     ...+|++.-+..+  + .  +. ...+...
T Consensus        91 ~~~-~~~~g~~~-~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~-----~~~~v~va~V~r~~~g~~~~l~~~~~~~~~  163 (253)
T PF10647_consen   91 VVR-DSASGTGE-PVEVDWPGLRGRITALRVSPDGTRVAVVVEDG-----GGGRVYVAGVVRDGDGVPRRLTGPRRVAPP  163 (253)
T ss_pred             EEE-ecCCCcce-eEEecccccCCceEEEEECCCCcEEEEEEecC-----CCCeEEEEEEEeCCCCCcceeccceEeccc
Confidence            332 33333311 2222211 11 456688999999999998554     2566888766533  3 1  11 1122222


Q ss_pred             CCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEE
Q 006979          295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI  340 (623)
Q Consensus       295 ~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l  340 (623)
                      ..    ..+....|.++++|+++.....+.... .+..+++..+.+
T Consensus       164 ~~----~~v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l  204 (253)
T PF10647_consen  164 LL----SDVTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPL  204 (253)
T ss_pred             cc----CcceeeeecCCCEEEEEeCCCCCceeE-EEEccCCccccc
Confidence            12    355689999999977776652222222 355556655555

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=98.07  E-value=0.001  Score=65.80  Aligned_cols=194  Identities=13%  Similarity=0.076  Sum_probs=102.1

Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~  244 (623)
                      |+|++++-  +  ..+++.............+++||||+.++++.....      ...|++...++..    +.+..+. 
T Consensus         2 G~l~~~~~--~--~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~------~~~L~~~~~~~~~----~~~~~g~-   66 (253)
T PF10647_consen    2 GQLVRVSG--G--GVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDG------GRSLYVGPAGGPV----RPVLTGG-   66 (253)
T ss_pred             CcEEEecC--C--ceeECCCCcCcCCccccceEECCCCCeEEEEEEcCC------CCEEEEEcCCCcc----eeeccCC-
Confidence            45655432  2  344554432111234667899999999999983222      2779999876553    4443443 


Q ss_pred             cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCC
Q 006979          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG  323 (623)
Q Consensus       245 ~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g  323 (623)
                      -...|.|++||. +.... +..    ....+.. +...+.. ....+..... .  ..+..+++||||. ++++... .+
T Consensus        67 ~l~~PS~d~~g~-~W~v~-~~~----~~~~~~~-~~~~g~~-~~~~v~~~~~-~--~~I~~l~vSpDG~RvA~v~~~-~~  134 (253)
T PF10647_consen   67 SLTRPSWDPDGW-VWTVD-DGS----GGVRVVR-DSASGTG-EPVEVDWPGL-R--GRITALRVSPDGTRVAVVVED-GG  134 (253)
T ss_pred             ccccccccCCCC-EEEEE-cCC----CceEEEE-ecCCCcc-eeEEeccccc-C--CceEEEEECCCCcEEEEEEec-CC
Confidence            456799999976 44343 222    1222332 2222211 1222222111 0  2577899999999 8877765 34


Q ss_pred             eeeEEEEe--cC-CCeEEEEe-------ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce
Q 006979          324 FWNLHKWI--ES-NNEVLAIY-------SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (623)
Q Consensus       324 ~~~L~~~d--~~-~~~~~~l~-------~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~  393 (623)
                      ..+|+..-  .+ .+..+.+.       .....+....|.             ++..|++.....+......+..+++..
T Consensus       135 ~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~-------------~~~~L~V~~~~~~~~~~~~v~~dG~~~  201 (253)
T PF10647_consen  135 GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS-------------DDSTLVVLGRSAGGPVVRLVSVDGGPS  201 (253)
T ss_pred             CCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec-------------CCCEEEEEeCCCCCceeEEEEccCCcc
Confidence            45666432  22 23122222       112234445665             445555555444433332566777777


Q ss_pred             eeccc
Q 006979          394 SLLDI  398 (623)
Q Consensus       394 ~~lt~  398 (623)
                      +.++.
T Consensus       202 ~~l~~  206 (253)
T PF10647_consen  202 TPLPS  206 (253)
T ss_pred             cccCC
Confidence            77643

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.07  E-value=0.0026  Score=75.44  Aligned_cols=247  Identities=12%  Similarity=0.099  Sum_probs=130.2

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCC-CC-CC--------CCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITP-DY-GE--------PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~-~~-~~--------~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      ++.+++++...++|+++|+++.  ....+.. +. +.        ...+-...+++++++.|++....+        ..|
T Consensus       579 ~g~lyVaDs~n~rI~v~d~~G~--~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n--------~~I  648 (1057)
T PLN02919        579 NNRLFISDSNHNRIVVTDLDGN--FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN--------HAL  648 (1057)
T ss_pred             CCeEEEEECCCCeEEEEeCCCC--EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC--------ceE
Confidence            4578888888888999998753  2222221 10 00        001223566888887665443221        568


Q ss_pred             EEEEcCCCCcccceecccCC--------------Cccc---ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCce
Q 006979          224 VAIALNGQNIQEPKVLVSGS--------------DFYA---FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV  286 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~--------------~~~~---~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~  286 (623)
                      .++|+.++.   ++.+....              ....   ..+++|++..|++....       ..+|++++..++.  
T Consensus       649 r~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-------~~~I~v~d~~~g~--  716 (1057)
T PLN02919        649 REIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-------QHQIWEYNISDGV--  716 (1057)
T ss_pred             EEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-------CCeEEEEECCCCe--
Confidence            889988876   55553210              0112   34699977777665422       3458888876551  


Q ss_pred             eeeEEEcCCC---------C--CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccc-------ccc
Q 006979          287 YKRVCVAGFD---------P--TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-------EFS  348 (623)
Q Consensus       287 ~~~~~~~~~~---------~--~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~-------~~~  348 (623)
                        ...+.+..         .  .-...+..+.++|||+.+|+++.  +..+|.++|++++..+.+.....       .++
T Consensus       717 --v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG  792 (1057)
T PLN02919        717 --TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG  792 (1057)
T ss_pred             --EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence              11221110         0  00023456789999985666776  45678899988776544432110       011


Q ss_pred             c---c---cccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC--------------cceEee--
Q 006979          349 R---P---LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF--------------TDIDNI--  406 (623)
Q Consensus       349 ~---~---~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~--------------~~v~~~--  406 (623)
                      .   +   ........+.+.   ++| .+|++.  .+..+|.++|.+++.+..+....              ..-.++  
T Consensus       793 ~~dG~g~~~~l~~P~Gvavd---~dG-~LYVAD--s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav  866 (1057)
T PLN02919        793 DHDGVGSEVLLQHPLGVLCA---KDG-QIYVAD--SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL  866 (1057)
T ss_pred             CCCCchhhhhccCCceeeEe---CCC-cEEEEE--CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence            0   0   000111233343   244 466654  34456888898888776543210              011223  


Q ss_pred             eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          407 TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       407 ~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ++++ ++|+.-.   ....|.++++++++.
T Consensus       867 d~dG-~lyVaDt---~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        867 GENG-RLFVADT---NNSLIRYLDLNKGEA  892 (1057)
T ss_pred             eCCC-CEEEEEC---CCCEEEEEECCCCcc
Confidence            4444 4544322   223677888877754

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.03  E-value=0.0042  Score=59.54  Aligned_cols=228  Identities=11%  Similarity=0.056  Sum_probs=123.4

Q ss_pred             EEEEEeCCCCcEEEEeCCCCC----CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979          156 TVIFSNYKDQRLYKHSIDSKD----SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~----~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g  231 (623)
                      .++++...|..+.++++...+    ...+.++..    ..+..+..+++||++.+-..+|         ..|.+.|+.+|
T Consensus        29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH----sH~v~dv~~s~dg~~alS~swD---------~~lrlWDl~~g   95 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH----SHFVSDVVLSSDGNFALSASWD---------GTLRLWDLATG   95 (315)
T ss_pred             ceEEEcccceEEEEEEeccCccccCceeeeeecc----ceEecceEEccCCceEEecccc---------ceEEEEEecCC
Confidence            456666666666666665321    123555543    5678899999999987766665         56888899998


Q ss_pred             Ccccceec-ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979          232 NIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (623)
Q Consensus       232 ~~~~~~~l-~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~  310 (623)
                      +   .++. .....-+...++|||.++|+--+.|.        .|.+++.-++.   ...+..+.+.   ..+.-++|+|
T Consensus        96 ~---~t~~f~GH~~dVlsva~s~dn~qivSGSrDk--------Tiklwnt~g~c---k~t~~~~~~~---~WVscvrfsP  158 (315)
T KOG0279|consen   96 E---STRRFVGHTKDVLSVAFSTDNRQIVSGSRDK--------TIKLWNTLGVC---KYTIHEDSHR---EWVSCVRFSP  158 (315)
T ss_pred             c---EEEEEEecCCceEEEEecCCCceeecCCCcc--------eeeeeeecccE---EEEEecCCCc---CcEEEEEEcC
Confidence            6   4444 43334456688999999987443332        36677766552   2222233211   4567889999


Q ss_pred             CCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecc-cccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       311 DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      ... .++++...++.  +-.+|+++-+.+.-..+. ..+         +...+.   ||| .+..+..++|..-  +.|+
T Consensus       159 ~~~~p~Ivs~s~Dkt--vKvWnl~~~~l~~~~~gh~~~v---------~t~~vS---pDG-slcasGgkdg~~~--LwdL  221 (315)
T KOG0279|consen  159 NESNPIIVSASWDKT--VKVWNLRNCQLRTTFIGHSGYV---------NTVTVS---PDG-SLCASGGKDGEAM--LWDL  221 (315)
T ss_pred             CCCCcEEEEccCCce--EEEEccCCcchhhccccccccE---------EEEEEC---CCC-CEEecCCCCceEE--EEEc
Confidence            864 44444331333  444566665544333221 111         122232   355 4554554555544  4565


Q ss_pred             CCCce-eecccCCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          389 FGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       389 ~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      +.++- ..+.. ...+.++ .....+.++.+..    ..|-..+++++.
T Consensus       222 ~~~k~lysl~a-~~~v~sl~fspnrywL~~at~----~sIkIwdl~~~~  265 (315)
T KOG0279|consen  222 NEGKNLYSLEA-FDIVNSLCFSPNRYWLCAATA----TSIKIWDLESKA  265 (315)
T ss_pred             cCCceeEeccC-CCeEeeEEecCCceeEeeccC----CceEEEeccchh
Confidence            54433 33322 2335555 3333333333322    236666777664

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.02  E-value=9.1e-05  Score=74.07  Aligned_cols=198  Identities=11%  Similarity=0.020  Sum_probs=109.9

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      +.-..||++|++|+-.+.+..       .-+|.+..++. .+-...+......+....||||.++|.-...++       
T Consensus       227 VWfl~FS~nGkyLAsaSkD~T-------aiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e-------  291 (519)
T KOG0293|consen  227 VWFLQFSHNGKYLASASKDST-------AIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE-------  291 (519)
T ss_pred             EEEEEEcCCCeeEeeccCCce-------EEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchH-------
Confidence            334679999999987665532       34666665554 111344555556677789999999997665333       


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccc
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW  352 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w  352 (623)
                       .+++.|++++.   ........- +  .++..-+|-|||.-+++...   ...++.+|.++.....-.    .+..|. 
T Consensus       292 -~~~lwDv~tgd---~~~~y~~~~-~--~S~~sc~W~pDg~~~V~Gs~---dr~i~~wdlDgn~~~~W~----gvr~~~-  356 (519)
T KOG0293|consen  292 -VLSLWDVDTGD---LRHLYPSGL-G--FSVSSCAWCPDGFRFVTGSP---DRTIIMWDLDGNILGNWE----GVRDPK-  356 (519)
T ss_pred             -heeeccCCcch---hhhhcccCc-C--CCcceeEEccCCceeEecCC---CCcEEEecCCcchhhccc----ccccce-
Confidence             27888888873   222222221 2  57788999999973322222   246777887665421111    001110 


Q ss_pred             cccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEE
Q 006979          353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVT  430 (623)
Q Consensus       353 ~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~  430 (623)
                         ...+..   ++||++++....   ..++..++.++..-+-+-.....+.++  +.+++.+++.-.    +..+...|
T Consensus       357 ---v~dlai---t~Dgk~vl~v~~---d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~----~qei~LWD  423 (519)
T KOG0293|consen  357 ---VHDLAI---TYDGKYVLLVTV---DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ----DQEIHLWD  423 (519)
T ss_pred             ---eEEEEE---cCCCcEEEEEec---ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc----cCeeEEee
Confidence               112222   338888776652   345666676655444233333345544  555554444332    24566667


Q ss_pred             cCC
Q 006979          431 LDD  433 (623)
Q Consensus       431 l~~  433 (623)
                      ++.
T Consensus       424 l~e  426 (519)
T KOG0293|consen  424 LEE  426 (519)
T ss_pred             cch
Confidence            664

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.02  E-value=0.00027  Score=71.77  Aligned_cols=201  Identities=11%  Similarity=0.062  Sum_probs=117.1

Q ss_pred             CCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       146 g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      ++.+..+.+. .++.+...++.+-++.+++.  .-..|+.-. ..........|.|+|+..+++....        -.+|
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk--~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr--------ky~y  283 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGK--VNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR--------KYLY  283 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCc--cChhheeee-eccCccceeeecCCCceEEEecccc--------eEEE
Confidence            4566666666 67778777876555555543  223444320 0011123456999999777765532        6799


Q ss_pred             EEEcCCCCcccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          225 AIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      .+|+.+.+++++.++..- ..+.-..+.|||++.|++...        .+-|+++...++.-      +....  ..+.+
T Consensus       284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~--------~G~I~lLhakT~el------i~s~K--ieG~v  347 (514)
T KOG2055|consen  284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN--------NGHIHLLHAKTKEL------ITSFK--IEGVV  347 (514)
T ss_pred             EeeccccccccccCCCCcccchhheeEecCCCCeEEEccc--------CceEEeehhhhhhh------hheee--eccEE
Confidence            999999884333333221 123444568999999887752        34588887766522      11111  11567


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      ..+.|+.||+.++++.. .|  ++|.+|+...........+..+.+       .++...   .++. ++.+....|..+|
T Consensus       348 ~~~~fsSdsk~l~~~~~-~G--eV~v~nl~~~~~~~rf~D~G~v~g-------ts~~~S---~ng~-ylA~GS~~GiVNI  413 (514)
T KOG2055|consen  348 SDFTFSSDSKELLASGG-TG--EVYVWNLRQNSCLHRFVDDGSVHG-------TSLCIS---LNGS-YLATGSDSGIVNI  413 (514)
T ss_pred             eeEEEecCCcEEEEEcC-Cc--eEEEEecCCcceEEEEeecCccce-------eeeeec---CCCc-eEEeccCcceEEE
Confidence            78999999995555543 34  899999877653333222222222       223322   1444 4445557888888


Q ss_pred             EEEe
Q 006979          384 GILD  387 (623)
Q Consensus       384 ~~~d  387 (623)
                      |-.+
T Consensus       414 Yd~~  417 (514)
T KOG2055|consen  414 YDGN  417 (514)
T ss_pred             eccc
Confidence            8654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.02  E-value=0.0027  Score=60.82  Aligned_cols=253  Identities=11%  Similarity=0.038  Sum_probs=130.9

Q ss_pred             cCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           87 ASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      .+..+..+..+|++.|||..     ++...|=+.++.+|...+.-++.+...         ..+.+.+| ...|.+ ...
T Consensus        60 ~G~ap~dvapapdG~VWft~-----qg~gaiGhLdP~tGev~~ypLg~Ga~P---------hgiv~gpdg~~Witd-~~~  124 (353)
T COG4257          60 NGSAPFDVAPAPDGAVWFTA-----QGTGAIGHLDPATGEVETYPLGSGASP---------HGIVVGPDGSAWITD-TGL  124 (353)
T ss_pred             CCCCccccccCCCCceEEec-----CccccceecCCCCCceEEEecCCCCCC---------ceEEECCCCCeeEec-Ccc
Confidence            44555666766677788876     455567778877652222223332111         12333344 333443 333


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~  245 (623)
                      .|-++|.++.  +.+..+-..+......+...|+++|+ |.|+....         .--++|...+.   +++......+
T Consensus       125 aI~R~dpkt~--evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G---------~yGrLdPa~~~---i~vfpaPqG~  189 (353)
T COG4257         125 AIGRLDPKTL--EVTRFPLPLEHADANLETAVFDPWGN-LWFTGQIG---------AYGRLDPARNV---ISVFPAPQGG  189 (353)
T ss_pred             eeEEecCccc--ceEEeecccccCCCcccceeeCCCcc-EEEeeccc---------cceecCcccCc---eeeeccCCCC
Confidence            5888888776  45444332223345567788999996 55554422         11255665554   3333221111


Q ss_pred             -ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC-CCCcEEEEEeCCCC
Q 006979          246 -YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-SKGELFFVTDRKNG  323 (623)
Q Consensus       246 -~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws-~DG~l~~~~~~~~g  323 (623)
                       -.+.+-.|||. +.|.+.-       .+.|-++|...+.    ..++...++.  ..-.+-.|+ |.| -++++..  +
T Consensus       190 gpyGi~atpdGs-vwyasla-------gnaiaridp~~~~----aev~p~P~~~--~~gsRriwsdpig-~~wittw--g  252 (353)
T COG4257         190 GPYGICATPDGS-VWYASLA-------GNAIARIDPFAGH----AEVVPQPNAL--KAGSRRIWSDPIG-RAWITTW--G  252 (353)
T ss_pred             CCcceEECCCCc-EEEEecc-------ccceEEcccccCC----cceecCCCcc--cccccccccCccC-cEEEecc--C
Confidence             23467899998 7776532       2336666655441    2222222210  111233454 334 5667765  6


Q ss_pred             eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccC
Q 006979          324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP  399 (623)
Q Consensus       324 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~  399 (623)
                      ...|+++|++...++...-....   +    ...++.+     |....+|.++. +...|.++|..+.+.+.+..+
T Consensus       253 ~g~l~rfdPs~~sW~eypLPgs~---a----rpys~rV-----D~~grVW~sea-~agai~rfdpeta~ftv~p~p  315 (353)
T COG4257         253 TGSLHRFDPSVTSWIEYPLPGSK---A----RPYSMRV-----DRHGRVWLSEA-DAGAIGRFDPETARFTVLPIP  315 (353)
T ss_pred             CceeeEeCcccccceeeeCCCCC---C----Ccceeee-----ccCCcEEeecc-ccCceeecCcccceEEEecCC
Confidence            77899999988766554311100   0    0011122     44555555542 334577888877777666554

>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]

Probab=98.01  E-value=3.4e-05  Score=75.57  Aligned_cols=138  Identities=14%  Similarity=0.153  Sum_probs=93.8

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+...+++. ||.+|...+......  +.  +...-+|+++.|..+.-...-++    .=++.||.|+-.|.+|-+|+.
T Consensus       213 NG~R~kiks~-dgneiDtmF~d~r~n--~~--~ngq~LvIC~EGNAGFYEvG~m~----tP~~lgYsvLGwNhPGFagST  283 (517)
T KOG1553|consen  213 NGQRLKIKSS-DGNEIDTMFLDGRPN--QS--GNGQDLVICFEGNAGFYEVGVMN----TPAQLGYSVLGWNHPGFAGST  283 (517)
T ss_pred             CCeEEEEeec-CCcchhheeecCCCC--CC--CCCceEEEEecCCccceEeeeec----ChHHhCceeeccCCCCccccC
Confidence            3456677776 888888766644320  01  22234777777763222222222    225679999999999865532


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~  614 (623)
                      .-       -+...+...+.+++++.++.=...++.|.+.|+|.|||.+++++ .+|| ++|+|..+-+.|+.-++
T Consensus       284 G~-------P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLA  351 (517)
T KOG1553|consen  284 GL-------PYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLA  351 (517)
T ss_pred             CC-------CCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHH
Confidence            21       13345566777888888875445689999999999999999999 7887 79999999999986553

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.98  E-value=0.0025  Score=68.73  Aligned_cols=144  Identities=17%  Similarity=0.170  Sum_probs=92.9

Q ss_pred             CCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       146 g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      |...+.+... .++++...||.+..+|+.-. ..-|.+|.+   .+.++.-.+.+|.|..+.+-..++        .+|+
T Consensus       394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft~P---~p~QfscvavD~sGelV~AG~~d~--------F~If  461 (893)
T KOG0291|consen  394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSP---EPIQFSCVAVDPSGELVCAGAQDS--------FEIF  461 (893)
T ss_pred             ceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeecCC---CceeeeEEEEcCCCCEEEeeccce--------EEEE
Confidence            4444555433 67777778999999999754 234556553   256777888899997655544443        7899


Q ss_pred             EEEcCCCCcccceecccCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC-CceeeeEEEcCCCCCcccc
Q 006979          225 AIALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIVES  302 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~-~~~~~~~~~~~~~~~~~~~  302 (623)
                      ++++.+|+   ...+..|. .-+....+||+|..||-.+||..      .++|  ++=+. +.++...  ...      .
T Consensus       462 vWS~qTGq---llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT------VRiW--~if~s~~~vEtl~--i~s------d  522 (893)
T KOG0291|consen  462 VWSVQTGQ---LLDILSGHEGPVSGLSFSPDGSLLASGSWDKT------VRIW--DIFSSSGTVETLE--IRS------D  522 (893)
T ss_pred             EEEeecCe---eeehhcCCCCcceeeEEccccCeEEeccccce------EEEE--EeeccCceeeeEe--ecc------c
Confidence            99999998   44444444 44666789999999998888863      3444  43322 2212211  111      2


Q ss_pred             CcCceeCCCCc-EEEEEeC
Q 006979          303 PTEPKWSSKGE-LFFVTDR  320 (623)
Q Consensus       303 ~~~~~ws~DG~-l~~~~~~  320 (623)
                      +..+.+.|||+ +...+-.
T Consensus       523 vl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  523 VLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             eeEEEEcCCCCeEEEEEec
Confidence            35788999999 6655543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.98  E-value=0.0035  Score=62.25  Aligned_cols=215  Identities=15%  Similarity=0.111  Sum_probs=117.2

Q ss_pred             eeecceeeCCCCCE-EEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc--cCCCcccceeeCCCCCEEEEEEecCCC
Q 006979          191 VSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPN  267 (623)
Q Consensus       191 ~~~~d~~~sPdG~~-l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~--~~~~~~~~p~wSPDG~~la~~~~~~~~  267 (623)
                      .|--++..+|+... ++|.+...        ..++++|..+++.  ...+.  .+..||..-.|||||++|+-.+.+...
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG--------~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~   74 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPG--------TFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET   74 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCC--------cEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC
Confidence            34456788994444 44444422        6799999999873  23343  344688889999999999877755432


Q ss_pred             CCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC------CCCe---------eeEEEEec
Q 006979          268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR------KNGF---------WNLHKWIE  332 (623)
Q Consensus       268 ~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~------~~g~---------~~L~~~d~  332 (623)
                         ....|-++|...+-  ...--+....    ..+.+..|.|||+.+++++-      +.|.         -.|..+|.
T Consensus        75 ---g~G~IgVyd~~~~~--~ri~E~~s~G----IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~  145 (305)
T PF07433_consen   75 ---GRGVIGVYDAARGY--RRIGEFPSHG----IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA  145 (305)
T ss_pred             ---CcEEEEEEECcCCc--EEEeEecCCC----cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence               46779999988431  1111122222    55678999999984445542      1222         24556766


Q ss_pred             CCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC-----eEEEEEEeCCCCceeecccCCc------
Q 006979          333 SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-----RSYLGILDDFGHSLSLLDIPFT------  401 (623)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-----~~~L~~~d~~~~~~~~lt~~~~------  401 (623)
                      .+|++..-.....+..    ..+.+.+.+-    .++.+++.....|     ..-|.+++.. +..+.+..+..      
T Consensus       146 ~sG~ll~q~~Lp~~~~----~lSiRHLa~~----~~G~V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~  216 (305)
T PF07433_consen  146 RSGALLEQVELPPDLH----QLSIRHLAVD----GDGTVAFAMQYQGDPGDAPPLVALHRRG-GALRLLPAPEEQWRRLN  216 (305)
T ss_pred             CCCceeeeeecCcccc----ccceeeEEec----CCCcEEEEEecCCCCCccCCeEEEEcCC-CcceeccCChHHHHhhC
Confidence            6776332111000000    1223344443    3344444443333     3345555543 33555544321      


Q ss_pred             -ceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          402 -DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       402 -~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                       .+.++  +.+++.+++++   .....+.+.|.++++.
T Consensus       217 ~Y~gSIa~~~~g~~ia~ts---PrGg~~~~~d~~tg~~  251 (305)
T PF07433_consen  217 GYIGSIAADRDGRLIAVTS---PRGGRVAVWDAATGRL  251 (305)
T ss_pred             CceEEEEEeCCCCEEEEEC---CCCCEEEEEECCCCCE
Confidence             24455  44555555432   3334566778888874

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.97  E-value=0.0039  Score=62.69  Aligned_cols=246  Identities=14%  Similarity=0.083  Sum_probs=122.2

Q ss_pred             CcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEecc-CCCCCCceeEEEEEEcCCCCcccceecccC
Q 006979          165 QRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALNGQNIQEPKVLVSG  242 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~-~~~~~~~~~~L~~idl~~g~~~~~~~l~~~  242 (623)
                      +++|++|.+++  +.. ++.      ......+..||||+.++...--. +..-.+....|-++|..+-.......|...
T Consensus        17 ~rv~viD~d~~--k~lGmi~------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k   88 (342)
T PF06433_consen   17 SRVYVIDADSG--KLLGMID------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK   88 (342)
T ss_dssp             EEEEEEETTTT--EEEEEEE------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS
T ss_pred             ceEEEEECCCC--cEEEEee------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc
Confidence            57999998765  221 222      23455678999999887543211 111011334566778877432112334433


Q ss_pred             CC-----cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEE--------------------------------------
Q 006979          243 SD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGY--------------------------------------  279 (623)
Q Consensus       243 ~~-----~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d--------------------------------------  279 (623)
                      ..     .......|.|||++++.... |     ...+-++|                                      
T Consensus        89 ~R~~~~~~~~~~~ls~dgk~~~V~N~T-P-----a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v  162 (342)
T PF06433_consen   89 PRAQVVPYKNMFALSADGKFLYVQNFT-P-----ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTV  162 (342)
T ss_dssp             -B--BS--GGGEEE-TTSSEEEEEEES-S-----SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             chheecccccceEEccCCcEEEEEccC-C-----CCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEE
Confidence            12     22345699999999876532 2     22233333                                      


Q ss_pred             -ecCCCceeeeE-EEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeeccc---cccccccc
Q 006979          280 -ISENGDVYKRV-CVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---EFSRPLWV  353 (623)
Q Consensus       280 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~---~~~~~~w~  353 (623)
                       ++..|....+. .+...+.+  .-...+.++.++. ++|++-.  |  ++|.+|..+.+.+...+-..   .-....|.
T Consensus       163 ~Ld~~Gk~~~~~t~~F~~~~d--p~f~~~~~~~~~~~~~F~Sy~--G--~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr  236 (342)
T PF06433_consen  163 TLDADGKEAQKSTKVFDPDDD--PLFEHPAYSRDGGRLYFVSYE--G--NVYSADLSGDSAKFGKPWSLLTDAEKADGWR  236 (342)
T ss_dssp             EETSTSSEEEEEEEESSTTTS---B-S--EEETTTTEEEEEBTT--S--EEEEEEETTSSEEEEEEEESS-HHHHHTTEE
T ss_pred             EECCCCCEeEeeccccCCCCc--ccccccceECCCCeEEEEecC--C--EEEEEeccCCcccccCcccccCccccccCcC
Confidence             33222211100 01111101  2234556655443 7776654  3  68888887766544432111   11235788


Q ss_pred             ccCcc-eeEEeecCCCCEEEEEEEE-------CCeEEEEEEeCCCCce-eecccCCcceEe--eeecCCEEEEEEecCCC
Q 006979          354 FGINS-YEIIQSHGEKNLIACSYRQ-------NGRSYLGILDDFGHSL-SLLDIPFTDIDN--ITLGNDCLFVEGASGVE  422 (623)
Q Consensus       354 ~~~~~-~~~l~~s~~~~~l~~~~~~-------~g~~~L~~~d~~~~~~-~~lt~~~~~v~~--~~~~~~~~~~~~~s~~~  422 (623)
                      +|.-. +.+.   +..++||+.-..       ++...||.+|+.+++. .++..+.. +.+  ++.+++-++|..+.  .
T Consensus       237 PGG~Q~~A~~---~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~--~  310 (342)
T PF06433_consen  237 PGGWQLIAYH---AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYALSA--G  310 (342)
T ss_dssp             E-SSS-EEEE---TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEEET--T
T ss_pred             Ccceeeeeec---cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEEcC--C
Confidence            76543 3443   256677765543       3467899999998764 45654322 323  35566655554432  2


Q ss_pred             CCeEEEEEcCCCcc
Q 006979          423 PSSVAKVTLDDHKL  436 (623)
Q Consensus       423 ~~~ly~~~l~~~~~  436 (623)
                      ...|+.+|..+|++
T Consensus       311 ~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  311 DGTLDVYDAATGKL  324 (342)
T ss_dssp             TTEEEEEETTT--E
T ss_pred             CCeEEEEeCcCCcE
Confidence            35799999998874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.97  E-value=0.00069  Score=70.80  Aligned_cols=186  Identities=11%  Similarity=0.062  Sum_probs=95.8

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      +.+.++|.++.+.  +..+..+........+|||||+++... .       ...|.++|+.+...  ..++-.+.     
T Consensus        16 ~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~Dgr~~yv~~-r-------dg~vsviD~~~~~~--v~~i~~G~-----   78 (369)
T PF02239_consen   16 GSVAVIDGATNKV--VARIPTGGAPHAGLKFSPDGRYLYVAN-R-------DGTVSVIDLATGKV--VATIKVGG-----   78 (369)
T ss_dssp             TEEEEEETTT-SE--EEEEE-STTEEEEEE-TT-SSEEEEEE-T-------TSEEEEEETTSSSE--EEEEE-SS-----
T ss_pred             CEEEEEECCCCeE--EEEEcCCCCceeEEEecCCCCEEEEEc-C-------CCeEEEEECCcccE--EEEEecCC-----
Confidence            6799999988763  345554444455577999999987664 2       13599999988743  23333333     


Q ss_pred             ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEE-EeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                       .......|+||+++++++.  ....+..+|..+.+... +.........    ...+-..+. .++....+++...+.+
T Consensus        79 -~~~~i~~s~DG~~~~v~n~--~~~~v~v~D~~tle~v~~I~~~~~~~~~----~~~Rv~aIv-~s~~~~~fVv~lkd~~  150 (369)
T PF02239_consen   79 -NPRGIAVSPDGKYVYVANY--EPGTVSVIDAETLEPVKTIPTGGMPVDG----PESRVAAIV-ASPGRPEFVVNLKDTG  150 (369)
T ss_dssp             -EEEEEEE--TTTEEEEEEE--ETTEEEEEETTT--EEEEEE--EE-TTT----S---EEEEE-E-SSSSEEEEEETTTT
T ss_pred             -CcceEEEcCCCCEEEEEec--CCCceeEeccccccceeecccccccccc----cCCCceeEE-ecCCCCEEEEEEccCC
Confidence             3457899999997777765  23367778987766443 3322111100    001111111 1225555555554433


Q ss_pred             eEEEEEEeCCCCce---eecccCCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          380 RSYLGILDDFGHSL---SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       380 ~~~L~~~d~~~~~~---~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                        +++.+|......   +.+..+....+.. ++++.+++.....   ...+-.+|+++++.
T Consensus       151 --~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~---sn~i~viD~~~~k~  206 (369)
T PF02239_consen  151 --EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG---SNKIAVIDTKTGKL  206 (369)
T ss_dssp             --EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG---GTEEEEEETTTTEE
T ss_pred             --eEEEEEeccccccceeeecccccccccccCcccceeeecccc---cceeEEEeeccceE
Confidence              678888665422   2333332223333 6666666554332   23788888877654

...

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.97  E-value=0.00091  Score=62.49  Aligned_cols=133  Identities=14%  Similarity=0.085  Sum_probs=79.2

Q ss_pred             CeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979          190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP  269 (623)
Q Consensus       190 ~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p  269 (623)
                      ..|.+|...+|+|++....+.+.+..-......||+.-+ +++   +..+...-+..++..|+-|-|+++|+...     
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl-----  178 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSL-----  178 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEecc-CCC---ceeeehhccCCccccccccCcEEEEEccC-----
Confidence            578999999999999888887654321223456776544 455   66666666677788999999999999532     


Q ss_pred             CCceEE--EEEEecCCCceeeeEEEcCCCC---CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE
Q 006979          270 WDKAEL--WVGYISENGDVYKRVCVAGFDP---TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (623)
Q Consensus       270 ~~~~~L--~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~  337 (623)
                        ..++  |-+|..++.. .+++.+-....   .-...+....-..+|.|| ++-.  ....++++|+.+|+.
T Consensus       179 --n~~V~a~dyd~~tG~~-snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~-Va~~--ng~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  179 --NYEVDAYDYDCPTGDL-SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLY-VATF--NGGTVQKVDPTTGKI  245 (310)
T ss_pred             --ceEEeeeecCCCcccc-cCcceeEEeccCCCcCCCCCCcceEccCCcEE-EEEe--cCcEEEEECCCCCcE
Confidence              2345  5555665532 23333221110   000122333444445444 4444  234688999999974

>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]

Probab=97.96  E-value=0.00011  Score=71.00  Aligned_cols=53  Identities=23%  Similarity=0.251  Sum_probs=43.5

Q ss_pred             HHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          556 NDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       556 ~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +.+..-+. |+.++..+|.+|.+|+|||+||.+++.++ ++|+.|.+.++.+|-.
T Consensus       118 ~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl  172 (264)
T COG2819         118 EFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL  172 (264)
T ss_pred             HHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence            34444455 44555679999999999999999999999 9999999999999854

>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.96  E-value=9.4e-06  Score=64.31  Aligned_cols=58  Identities=21%  Similarity=0.323  Sum_probs=47.7

Q ss_pred             CeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       472 g~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      |.+|+...+.|++       . +..+|+++||-  ......|...++.|+++||.|+.+|+||.|.+.
T Consensus         1 G~~L~~~~w~p~~-------~-~k~~v~i~HG~--~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~   58 (79)
T PF12146_consen    1 GTKLFYRRWKPEN-------P-PKAVVVIVHGF--GEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSE   58 (79)
T ss_pred             CcEEEEEEecCCC-------C-CCEEEEEeCCc--HHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCC
Confidence            5678888898976       3 56899999998  444457788999999999999999999977654

Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.

>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function

Probab=97.95  E-value=4.9e-05  Score=75.23  Aligned_cols=112  Identities=20%  Similarity=0.240  Sum_probs=70.1

Q ss_pred             CCCEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECCCCC-CCCchhHHHhhccCCccchHHHHHHHHHHHHhC--C
Q 006979          494 KPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVGS--G  569 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~rGs-~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~--~  569 (623)
                      ++-+||++-|-..+.... .....++.+.+.||.|+.+..+.| .|+|-.-.+        .|++|+.++|+||++.  |
T Consensus        32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~--------~D~~eI~~~v~ylr~~~~g  103 (303)
T PF08538_consen   32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLD--------RDVEEIAQLVEYLRSEKGG  103 (303)
T ss_dssp             SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HH--------HHHHHHHHHHHHHHHHS--
T ss_pred             CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhh--------hHHHHHHHHHHHHHHhhcc
Confidence            345888886654333332 334567777778999999998863 345543332        5789999999999886  2


Q ss_pred             CCCCCceEEEEcChHHHHHHHHh-c-CC----CceeEEEecccCCCHHHh
Q 006979          570 KADEKRLCITGGSAGGYTTLAAL-A-FR----DTFKAGASLYGVSIPVII  613 (623)
Q Consensus       570 ~~d~~rv~i~G~S~GG~~~~~~~-~-~~----~~f~a~v~~~g~~d~~~~  613 (623)
                      .-..+||+|||||-|..-++..+ . .+    ..+.++|..+||+|-+.+
T Consensus       104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~  153 (303)
T PF08538_consen  104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAI  153 (303)
T ss_dssp             ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTST
T ss_pred             ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHh
Confidence            23578999999999999999888 3 22    679999999999997654

This family contains many hypothetical proteins. ; PDB: 2Q0X_B.

>PTZ00420 coronin; Provisional

Probab=97.95  E-value=0.0017  Score=71.19  Aligned_cols=207  Identities=11%  Similarity=0.016  Sum_probs=111.3

Q ss_pred             CceEEEeC--CEEEEEeCCCCcEEEEeCCCCCCCce-------ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCC
Q 006979          147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSSPL-------PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDAL  217 (623)
Q Consensus       147 ~~~~~~s~--d~l~f~~~~~~~l~~~d~~~g~~~~~-------~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~  217 (623)
                      +.+..+++  +.++++...++.|.++++.++.....       .+...    ........|+|++..++++....     
T Consensus        77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH----~~~V~sVaf~P~g~~iLaSgS~D-----  147 (568)
T PTZ00420         77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH----KKKISIIDWNPMNYYIMCSSGFD-----  147 (568)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC----CCcEEEEEECCCCCeEEEEEeCC-----
Confidence            44555654  35777777888899999875311111       12211    23466788999998876554322     


Q ss_pred             CceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979          218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP  297 (623)
Q Consensus       218 ~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~  297 (623)
                         ..|.++|+.+++.  ...+. ..+.+....|+|||+.|+....+        ..|.++|+..+..   ...+.+.. 
T Consensus       148 ---gtIrIWDl~tg~~--~~~i~-~~~~V~SlswspdG~lLat~s~D--------~~IrIwD~Rsg~~---i~tl~gH~-  209 (568)
T PTZ00420        148 ---SFVNIWDIENEKR--AFQIN-MPKKLSSLKWNIKGNLLSGTCVG--------KHMHIIDPRKQEI---ASSFHIHD-  209 (568)
T ss_pred             ---CeEEEEECCCCcE--EEEEe-cCCcEEEEEECCCCCEEEEEecC--------CEEEEEECCCCcE---EEEEeccc-
Confidence               5688889988752  22332 23345567899999988755422        2488889887632   22233332 


Q ss_pred             CccccC-cCce----eCCCCcEEEEEe-CCCCeeeEEEEecCC-CeEEEEeeccccccc--ccccccCcceeEEeecCCC
Q 006979          298 TIVESP-TEPK----WSSKGELFFVTD-RKNGFWNLHKWIESN-NEVLAIYSLDAEFSR--PLWVFGINSYEIIQSHGEK  368 (623)
Q Consensus       298 ~~~~~~-~~~~----ws~DG~l~~~~~-~~~g~~~L~~~d~~~-~~~~~l~~~~~~~~~--~~w~~~~~~~~~l~~s~~~  368 (623)
                         ... ....    |++|++.++... .+.....|..+|+.. ++.......+...+.  |.|.            ++.
T Consensus       210 ---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D------------~~t  274 (568)
T PTZ00420        210 ---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD------------EST  274 (568)
T ss_pred             ---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee------------CCC
Confidence               111 1222    458877444433 312234677778764 332222111111111  1221            145


Q ss_pred             CEEEEEEEECCeEEEEEEeCCCCceeecc
Q 006979          369 NLIACSYRQNGRSYLGILDDFGHSLSLLD  397 (623)
Q Consensus       369 ~~l~~~~~~~g~~~L~~~d~~~~~~~~lt  397 (623)
                      +.+|++...++.-++|-+  ..+....|.
T Consensus       275 g~l~lsGkGD~tIr~~e~--~~~~~~~l~  301 (568)
T PTZ00420        275 GLIYLIGKGDGNCRYYQH--SLGSIRKVN  301 (568)
T ss_pred             CCEEEEEECCCeEEEEEc--cCCcEEeec
Confidence            566666655666555544  445555554

>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases

Probab=97.94  E-value=2e-05  Score=76.41  Aligned_cols=77  Identities=13%  Similarity=0.076  Sum_probs=60.6

Q ss_pred             eEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEe
Q 006979          525 WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGAS  603 (623)
Q Consensus       525 ~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~  603 (623)
                      |.|+++|.||.|.....    ....+.....+|+.+.++++++.-.+  +++.++||||||.+++.++ .+|++++++|+
T Consensus         1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl   74 (230)
T PF00561_consen    1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL   74 (230)
T ss_dssp             EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred             CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence            68999999997654421    11223345578999999998886333  4599999999999999998 89999999999


Q ss_pred             cccC
Q 006979          604 LYGV  607 (623)
Q Consensus       604 ~~g~  607 (623)
                      ..++
T Consensus        75 ~~~~   78 (230)
T PF00561_consen   75 ISPP   78 (230)
T ss_dssp             ESES
T ss_pred             Eeee
Confidence            9986

; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.93  E-value=0.001  Score=71.96  Aligned_cols=158  Identities=13%  Similarity=0.135  Sum_probs=100.7

Q ss_pred             ecCCceEEEeCC-EEEEEeCCCCcEEEEeCC-CCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCcee
Q 006979          144 EYGGGAFRIFGD-TVIFSNYKDQRLYKHSID-SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT  221 (623)
Q Consensus       144 ~~g~~~~~~s~d-~l~f~~~~~~~l~~~d~~-~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~  221 (623)
                      ..++....+++| ..+.....|.+|.++|+. .+ ...+.+...    ........|+|+|+.++..+.|         .
T Consensus       203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-~~~~~l~gH----~~~v~~~~f~p~g~~i~Sgs~D---------~  268 (456)
T KOG0266|consen  203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-RNLKTLKGH----STYVTSVAFSPDGNLLVSGSDD---------G  268 (456)
T ss_pred             ccceeeeEECCCCcEEEEecCCceEEEeeccCCC-eEEEEecCC----CCceEEEEecCCCCEEEEecCC---------C
Confidence            345666777766 466677778889999983 32 223444432    3455778899999766665554         4


Q ss_pred             EEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc
Q 006979          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~  301 (623)
                      .+.+.|+.+++.  .+.|....+.+....+++||+.|+-.+.|        ..|.++|+.++... ....+.+.. .  .
T Consensus       269 tvriWd~~~~~~--~~~l~~hs~~is~~~f~~d~~~l~s~s~d--------~~i~vwd~~~~~~~-~~~~~~~~~-~--~  334 (456)
T KOG0266|consen  269 TVRIWDVRTGEC--VRKLKGHSDGISGLAFSPDGNLLVSASYD--------GTIRVWDLETGSKL-CLKLLSGAE-N--S  334 (456)
T ss_pred             cEEEEeccCCeE--EEeeeccCCceEEEEECCCCCEEEEcCCC--------ccEEEEECCCCcee-eeecccCCC-C--C
Confidence            578888888762  45565556677788999999988765432        24888898877210 012333332 1  1


Q ss_pred             -cCcCceeCCCCcEEEEEeCCCCeeeEEEE
Q 006979          302 -SPTEPKWSSKGELFFVTDRKNGFWNLHKW  330 (623)
Q Consensus       302 -~~~~~~ws~DG~l~~~~~~~~g~~~L~~~  330 (623)
                       .+....|+|+|+.+++... ++...+|.+
T Consensus       335 ~~~~~~~fsp~~~~ll~~~~-d~~~~~w~l  363 (456)
T KOG0266|consen  335 APVTSVQFSPNGKYLLSASL-DRTLKLWDL  363 (456)
T ss_pred             CceeEEEECCCCcEEEEecC-CCeEEEEEc
Confidence             3577899999985555544 455566544

>PTZ00421 coronin; Provisional

Probab=97.92  E-value=0.0017  Score=70.55  Aligned_cols=161  Identities=9%  Similarity=0.042  Sum_probs=92.3

Q ss_pred             CceEEEeC--CEEEEEeCCCCcEEEEeCCCCCC------CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCC
Q 006979          147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDS------SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALN  218 (623)
Q Consensus       147 ~~~~~~s~--d~l~f~~~~~~~l~~~d~~~g~~------~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~  218 (623)
                      +.++.+++  +.++++...|+.|.++|+.++..      ....|...    ...+....|+|++..++++....      
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH----~~~V~~l~f~P~~~~iLaSgs~D------  147 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH----TKKVGIVSFHPSAMNVLASAGAD------  147 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC----CCcEEEEEeCcCCCCEEEEEeCC------
Confidence            34555554  35667777788899999865310      01122221    23466788999875444433321      


Q ss_pred             ceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979          219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (623)
Q Consensus       219 ~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~  298 (623)
                        ..|.++|+.+++.  ...+....+.+....|+|||+.|+....|        ..|.++|+..+..   ...+.+.. .
T Consensus       148 --gtVrIWDl~tg~~--~~~l~~h~~~V~sla~spdG~lLatgs~D--------g~IrIwD~rsg~~---v~tl~~H~-~  211 (493)
T PTZ00421        148 --MVVNVWDVERGKA--VEVIKCHSDQITSLEWNLDGSLLCTTSKD--------KKLNIIDPRDGTI---VSSVEAHA-S  211 (493)
T ss_pred             --CEEEEEECCCCeE--EEEEcCCCCceEEEEEECCCCEEEEecCC--------CEEEEEECCCCcE---EEEEecCC-C
Confidence              5688889988752  33344344556678899999988766533        2488889876632   22233322 1


Q ss_pred             ccccCcCceeCCCCcEEEEEe-CCCCeeeEEEEecCCC
Q 006979          299 IVESPTEPKWSSKGELFFVTD-RKNGFWNLHKWIESNN  335 (623)
Q Consensus       299 ~~~~~~~~~ws~DG~l~~~~~-~~~g~~~L~~~d~~~~  335 (623)
                        .......|.+++..++... .......|..+|+...
T Consensus       212 --~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        212 --AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             --CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence              1234678999877444332 2122345666776543

>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]

Probab=97.91  E-value=1.4e-05  Score=74.26  Aligned_cols=97  Identities=16%  Similarity=0.119  Sum_probs=70.6

Q ss_pred             CHHhHHHHcCceEEEEECCCCCC----C-CchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHH
Q 006979          514 NLSIQYWTSRGWAFVDVNYGGST----G-YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTT  588 (623)
Q Consensus       514 ~~~~~~~a~~G~~v~~~d~rGs~----~-~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~  588 (623)
                      ...+..++..||.|+.||+..+.    + --.++..-..+.-......|+.+.++||..+|  +..+||++|+||||-.+
T Consensus        57 r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~v  134 (242)
T KOG3043|consen   57 REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVV  134 (242)
T ss_pred             HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEE
Confidence            45677888999999999976531    1 11122222333334455789999999999775  46899999999999988


Q ss_pred             HHHh-cCCCceeEEEecccC-CCHHHh
Q 006979          589 LAAL-AFRDTFKAGASLYGV-SIPVII  613 (623)
Q Consensus       589 ~~~~-~~~~~f~a~v~~~g~-~d~~~~  613 (623)
                      ..+. ..+ .|.|+|+.+|. .|..+.
T Consensus       135 v~~~~~~~-~f~a~v~~hps~~d~~D~  160 (242)
T KOG3043|consen  135 VTLSAKDP-EFDAGVSFHPSFVDSADI  160 (242)
T ss_pred             EEeeccch-hheeeeEecCCcCChhHH
Confidence            8777 555 89999999995 565443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.0019  Score=62.91  Aligned_cols=156  Identities=10%  Similarity=0.129  Sum_probs=84.7

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      .+.+...|..|.+||+...  .-+-+...    .. -.-.+++|.|  |+|+...+.       ..|-++|+..=...+-
T Consensus       114 ~FlS~S~D~tvrLWDlR~~--~cqg~l~~----~~-~pi~AfDp~G--LifA~~~~~-------~~IkLyD~Rs~dkgPF  177 (311)
T KOG1446|consen  114 TFLSSSLDKTVRLWDLRVK--KCQGLLNL----SG-RPIAAFDPEG--LIFALANGS-------ELIKLYDLRSFDKGPF  177 (311)
T ss_pred             eEEecccCCeEEeeEecCC--CCceEEec----CC-CcceeECCCC--cEEEEecCC-------CeEEEEEecccCCCCc
Confidence            4455556777999998854  22222221    00 1125699999  444443322       2577778754110001


Q ss_pred             ee--cc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          237 KV--LV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       237 ~~--l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      +.  +. ....-....+||||||.|.... +       .+.++++|.=.|.   ....+.+.... ........++|||+
T Consensus       178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~-------~s~~~~lDAf~G~---~~~tfs~~~~~-~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  178 TTFSITDNDEAEWTDLEFSPDGKSILLST-N-------ASFIYLLDAFDGT---VKSTFSGYPNA-GNLPLSATFTPDSK  245 (311)
T ss_pred             eeEccCCCCccceeeeEEcCCCCEEEEEe-C-------CCcEEEEEccCCc---EeeeEeeccCC-CCcceeEEECCCCc
Confidence            22  22 1122356788999999998654 3       3458999876663   22222222201 02335788999999


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeEEEEeec
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSL  343 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~  343 (623)
                      +++.... +|.  |+.++.+++.....+.+
T Consensus       246 Fvl~gs~-dg~--i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  246 FVLSGSD-DGT--IHVWNLETGKKVAVLRG  272 (311)
T ss_pred             EEEEecC-CCc--EEEEEcCCCcEeeEecC
Confidence            6655544 454  45555677765554433

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=97.89  E-value=0.00063  Score=75.98  Aligned_cols=98  Identities=11%  Similarity=0.205  Sum_probs=66.0

Q ss_pred             CEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec-ccCCCcccceeeCCCCCEEEE-EEecCCCCCCCceEEEEEEe
Q 006979          203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAW-IEWHHPNMPWDKAELWVGYI  280 (623)
Q Consensus       203 ~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l-~~~~~~~~~p~wSPDG~~la~-~~~~~~~~p~~~~~L~v~d~  280 (623)
                      .+|+|+....        .+|.++|.++..   ++.+ .........|+|||||++|+| ++...-.   ....||+.++
T Consensus       319 tkiAfv~~~~--------~~L~~~D~dG~n---~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~---g~s~vYv~~L  384 (912)
T TIGR02171       319 AKLAFRNDVT--------GNLAYIDYTKGA---SRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLP---GKSSVYVRNL  384 (912)
T ss_pred             eeEEEEEcCC--------CeEEEEecCCCC---ceEEEecCCCceecCcCCCCCCEEEEEEeecCCC---CCceEEEEeh
Confidence            3688876522        379999999987   7777 666666778999999999999 6544310   1566999999


Q ss_pred             cCCCceeeeEEEcCCCCCccccCcCceeCCCCc--EEEEEeC
Q 006979          281 SENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDR  320 (623)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~--l~~~~~~  320 (623)
                      .+.+. ...++..+ .    ..+.+.+-..+|.  |+|+++.
T Consensus       385 ~t~~~-~~vkl~ve-~----aaiprwrv~e~gdt~ivyv~~a  420 (912)
T TIGR02171       385 NASGS-GLVKLPVE-N----AAIPRWRVLENGDTVIVYVSDA  420 (912)
T ss_pred             hccCC-CceEeecc-c----ccccceEecCCCCeEEEEEcCC
Confidence            98754 12222222 2    3444555567776  7888775

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PTZ00421 coronin; Provisional

Probab=97.89  E-value=0.013  Score=63.69  Aligned_cols=120  Identities=14%  Similarity=0.151  Sum_probs=73.1

Q ss_pred             eeecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-----ccceecccCCCcccceeeCCCCC-EEEEEEe
Q 006979          191 VSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-----QEPKVLVSGSDFYAFPRMDPRGE-RMAWIEW  263 (623)
Q Consensus       191 ~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-----~~~~~l~~~~~~~~~p~wSPDG~-~la~~~~  263 (623)
                      ..+.+..|+| +++.|+...+|         ..|.++|+.++..     ..+..+......+....|+|++. .|+-...
T Consensus        76 ~~V~~v~fsP~d~~~LaSgS~D---------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~  146 (493)
T PTZ00421         76 GPIIDVAFNPFDPQKLFTASED---------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA  146 (493)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCC---------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence            4567889999 88877665554         4567777755321     01223333334456678999975 4544443


Q ss_pred             cCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE
Q 006979          264 HHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (623)
Q Consensus       264 ~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~  337 (623)
                      |        ..|.++|+..+.   ....+.+..    ..+....|+|||++++.... ++.  |..+|+.+++.
T Consensus       147 D--------gtVrIWDl~tg~---~~~~l~~h~----~~V~sla~spdG~lLatgs~-Dg~--IrIwD~rsg~~  202 (493)
T PTZ00421        147 D--------MVVNVWDVERGK---AVEVIKCHS----DQITSLEWNLDGSLLCTTSK-DKK--LNIIDPRDGTI  202 (493)
T ss_pred             C--------CEEEEEECCCCe---EEEEEcCCC----CceEEEEEECCCCEEEEecC-CCE--EEEEECCCCcE
Confidence            3        237888988762   333444443    45778999999986655544 344  55667777653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.88  E-value=0.004  Score=67.38  Aligned_cols=157  Identities=11%  Similarity=0.103  Sum_probs=96.5

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCC--CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDS--SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~--~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      +.+..++++ ..+.....++.+..+++.+. .  ..+.+..    ......+..|+|||++++-...|         ..|
T Consensus       162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~-~~~~~~~l~~----h~~~v~~~~fs~d~~~l~s~s~D---------~ti  227 (456)
T KOG0266|consen  162 VTCVDFSPDGRALAAASSDGLIRIWKLEGI-KSNLLRELSG----HTRGVSDVAFSPDGSYLLSGSDD---------KTL  227 (456)
T ss_pred             eEEEEEcCCCCeEEEccCCCcEEEeecccc-cchhhccccc----cccceeeeEECCCCcEEEEecCC---------ceE
Confidence            334444544 22333334455666666443 1  1222211    13456789999999977765554         567


Q ss_pred             EEEEc-CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979          224 VAIAL-NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (623)
Q Consensus       224 ~~idl-~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~  302 (623)
                      .+.|+ +.+..  ++.+.....++....|+|+|+.|+-.+.|+        .+.+.|+.++   ...+.+.+..    ..
T Consensus       228 riwd~~~~~~~--~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~--------tvriWd~~~~---~~~~~l~~hs----~~  290 (456)
T KOG0266|consen  228 RIWDLKDDGRN--LKTLKGHSTYVTSVAFSPDGNLLVSGSDDG--------TVRIWDVRTG---ECVRKLKGHS----DG  290 (456)
T ss_pred             EEeeccCCCeE--EEEecCCCCceEEEEecCCCCEEEEecCCC--------cEEEEeccCC---eEEEeeeccC----Cc
Confidence            88888 44331  455655556677789999997776665443        2777788775   2456666665    56


Q ss_pred             CcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE
Q 006979          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (623)
Q Consensus       303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~  337 (623)
                      +....+++||.++..+.. ++  .|..+|..++..
T Consensus       291 is~~~f~~d~~~l~s~s~-d~--~i~vwd~~~~~~  322 (456)
T KOG0266|consen  291 ISGLAFSPDGNLLVSASY-DG--TIRVWDLETGSK  322 (456)
T ss_pred             eEEEEECCCCCEEEEcCC-Cc--cEEEEECCCCce
Confidence            778899999986665543 34  456678777774

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.87  E-value=0.0039  Score=60.13  Aligned_cols=151  Identities=13%  Similarity=0.078  Sum_probs=86.7

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++|......--+++|..+. .++..+...  ....+|....|||||++|+.+..+...    .+..|-++|...+    
T Consensus        82 avafARrPGtf~~vfD~~~~-~~pv~~~s~--~~RHfyGHGvfs~dG~~LYATEndfd~----~rGViGvYd~r~~----  150 (366)
T COG3490          82 AVAFARRPGTFAMVFDPNGA-QEPVTLVSQ--EGRHFYGHGVFSPDGRLLYATENDFDP----NRGVIGVYDAREG----  150 (366)
T ss_pred             eEEEEecCCceEEEECCCCC-cCcEEEecc--cCceeecccccCCCCcEEEeecCCCCC----CCceEEEEecccc----
Confidence            56776544444778888875 445555443  224678889999999877664433321    3467778887644    


Q ss_pred             ceecccCCCccc---ceeeCCCCCEEEEEEe---cCCCC---CC--C--ceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979          236 PKVLVSGSDFYA---FPRMDPRGERMAWIEW---HHPNM---PW--D--KAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (623)
Q Consensus       236 ~~~l~~~~~~~~---~p~wSPDG~~la~~~~---~~~~~---p~--~--~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~  302 (623)
                      ...+.+-..+-.   ...|.+||+.|+...-   .+|..   +-  +  ...|.++|..++..++ +..++...  ...+
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie-kh~Lp~~l--~~lS  227 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE-KHTLPASL--RQLS  227 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh-hccCchhh--hhcc
Confidence            223322222222   2469999999987653   23221   00  0  2346677755554333 33333222  1156


Q ss_pred             CcCceeCCCCcEEEEEeC
Q 006979          303 PTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       303 ~~~~~ws~DG~l~~~~~~  320 (623)
                      +....-.+||+++|-.+.
T Consensus       228 iRHld~g~dgtvwfgcQy  245 (366)
T COG3490         228 IRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             eeeeeeCCCCcEEEEEEe
Confidence            677788899997777665

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.87  E-value=0.00034  Score=70.35  Aligned_cols=215  Identities=8%  Similarity=0.029  Sum_probs=122.8

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPd--G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      .++.+..-+|.+-+++.... .....+-..    ..+..+..|+|.  +..++-...|..       -.||  ++++...
T Consensus       188 ~~laT~swsG~~kvW~~~~~-~~~~~l~gH----~~~v~~~~fhP~~~~~~lat~s~Dgt-------vklw--~~~~e~~  253 (459)
T KOG0272|consen  188 KHLATGSWSGLVKVWSVPQC-NLLQTLRGH----TSRVGAAVFHPVDSDLNLATASADGT-------VKLW--KLSQETP  253 (459)
T ss_pred             CeEEEeecCCceeEeecCCc-ceeEEEecc----ccceeeEEEccCCCccceeeeccCCc-------eeee--ccCCCcc
Confidence            45555556676666666554 122333322    356778889997  444444333321       3355  4444221


Q ss_pred             ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       234 ~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                        +..|.....-++..+|.|+|++|.-.+.|+.   |     .+.|+.++.   +.....|..    ..+...+|.+||.
T Consensus       254 --l~~l~gH~~RVs~VafHPsG~~L~TasfD~t---W-----RlWD~~tk~---ElL~QEGHs----~~v~~iaf~~DGS  316 (459)
T KOG0272|consen  254 --LQDLEGHLARVSRVAFHPSGKFLGTASFDST---W-----RLWDLETKS---ELLLQEGHS----KGVFSIAFQPDGS  316 (459)
T ss_pred             --hhhhhcchhhheeeeecCCCceeeecccccc---h-----hhcccccch---hhHhhcccc----cccceeEecCCCc
Confidence              4556655556777899999999988776654   2     244777662   233445555    6788999999998


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~  392 (623)
                      |+..... +...+||  |+.+|.-.-+.. .-.++-...|++             +++.+.+...++.-+||.+... ..
T Consensus       317 L~~tGGl-D~~~RvW--DlRtgr~im~L~gH~k~I~~V~fsP-------------NGy~lATgs~Dnt~kVWDLR~r-~~  379 (459)
T KOG0272|consen  317 LAATGGL-DSLGRVW--DLRTGRCIMFLAGHIKEILSVAFSP-------------NGYHLATGSSDNTCKVWDLRMR-SE  379 (459)
T ss_pred             eeeccCc-cchhhee--ecccCcEEEEecccccceeeEeECC-------------CceEEeecCCCCcEEEeeeccc-cc
Confidence            7765443 3445554  666665433332 222334445553             4556666666777788766432 22


Q ss_pred             eeecccCCcceEee--eecCCEEEEEEe
Q 006979          393 LSLLDIPFTDIDNI--TLGNDCLFVEGA  418 (623)
Q Consensus       393 ~~~lt~~~~~v~~~--~~~~~~~~~~~~  418 (623)
                      +-.+......|..+  ++..+.++++++
T Consensus       380 ly~ipAH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  380 LYTIPAHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             ceecccccchhhheEecccCCeEEEEcc
Confidence            33343333335555  556777777664

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=97.87  E-value=0.00013  Score=76.51  Aligned_cols=206  Identities=14%  Similarity=0.115  Sum_probs=118.2

Q ss_pred             CccCceEEcC--CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC--CEEEEEeCCC
Q 006979           89 KRLGGTAVDG--HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG--DTVIFSNYKD  164 (623)
Q Consensus        89 ~~~~~~~~~~--~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~--d~l~f~~~~~  164 (623)
                      ..+..+.|+|  .+++.-    ..|+|+..||+...++. ..-..+|+..   -..|.--+.++.+.+  ..++.+..-+
T Consensus       628 t~vtDl~WdPFD~~rLAV----a~ddg~i~lWr~~a~gl-~e~~~tPe~~---lt~h~eKI~slRfHPLAadvLa~asyd  699 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAV----ATDDGQINLWRLTANGL-PENEMTPEKI---LTIHGEKITSLRFHPLAADVLAVASYD  699 (1012)
T ss_pred             ceeeecccCCCChHHeee----cccCceEEEEEeccCCC-CcccCCccee---eecccceEEEEEecchhhhHhhhhhcc
Confidence            4456788888  444432    33579999999976622 3333345431   001111112222211  1122333345


Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~  244 (623)
                      ..|-++|+.++ ..--.|...    .....+++|||||++++-|+.|         ..|.++...+++    +.+.++..
T Consensus       700 ~Ti~lWDl~~~-~~~~~l~gH----tdqIf~~AWSpdGr~~AtVcKD---------g~~rVy~Prs~e----~pv~Eg~g  761 (1012)
T KOG1445|consen  700 STIELWDLANA-KLYSRLVGH----TDQIFGIAWSPDGRRIATVCKD---------GTLRVYEPRSRE----QPVYEGKG  761 (1012)
T ss_pred             ceeeeeehhhh-hhhheeccC----cCceeEEEECCCCcceeeeecC---------ceEEEeCCCCCC----CccccCCC
Confidence            56888899865 222233332    3456679999999999999876         568999988774    45554433


Q ss_pred             c----ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCC--ceeeeEEEcCCCCCccccCcCceeCCCCcEEEEE
Q 006979          245 F----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG--DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT  318 (623)
Q Consensus       245 ~----~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~  318 (623)
                      -    -+...|.=||+.|..+..+..    ...+|-+++...-.  .+... .+ +..    -++--|.+.+|..++|++
T Consensus       762 pvgtRgARi~wacdgr~viv~Gfdk~----SeRQv~~Y~Aq~l~~~pl~t~-~l-Dva----ps~LvP~YD~Ds~~lflt  831 (1012)
T KOG1445|consen  762 PVGTRGARILWACDGRIVIVVGFDKS----SERQVQMYDAQTLDLRPLYTQ-VL-DVA----PSPLVPHYDYDSNVLFLT  831 (1012)
T ss_pred             CccCcceeEEEEecCcEEEEeccccc----chhhhhhhhhhhccCCcceee-ee-ccc----CccccccccCCCceEEEe
Confidence            2    233459999999988877654    34556666655431  11111 11 111    244567788898888888


Q ss_pred             eCCCCeeeEEEEec
Q 006979          319 DRKNGFWNLHKWIE  332 (623)
Q Consensus       319 ~~~~g~~~L~~~d~  332 (623)
                      ..  |...++.|..
T Consensus       832 GK--GD~~v~~yEv  843 (1012)
T KOG1445|consen  832 GK--GDRFVNMYEV  843 (1012)
T ss_pred             cC--CCceEEEEEe
Confidence            76  5555665543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.028  Score=54.92  Aligned_cols=248  Identities=12%  Similarity=0.036  Sum_probs=128.0

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEE--eCCEEEEEeC-C
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI--FGDTVIFSNY-K  163 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~--s~d~l~f~~~-~  163 (623)
                      ...+.++-+++ |..+.-.    .++...+||-...+   .....++..        .||...+..  .+..++.+.. .
T Consensus        14 ~~~i~sl~fs~~G~~lits----s~dDsl~LYd~~~g---~~~~ti~sk--------kyG~~~~~Fth~~~~~i~sStk~   78 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITS----SEDDSLRLYDSLSG---KQVKTINSK--------KYGVDLACFTHHSNTVIHSSTKE   78 (311)
T ss_pred             CCceeEEEecCCCCEEEEe----cCCCeEEEEEcCCC---ceeeEeecc--------cccccEEEEecCCceEEEccCCC
Confidence            45677888886 5544431    12345556654332   444444432        456544333  3335555433 3


Q ss_pred             CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~  243 (623)
                      +..|..+++.+. .-.|.....    ..++.....+|-+...+-...|         ..+..+|+...+   .+-+..-.
T Consensus        79 d~tIryLsl~dN-kylRYF~GH----~~~V~sL~~sP~~d~FlS~S~D---------~tvrLWDlR~~~---cqg~l~~~  141 (311)
T KOG1446|consen   79 DDTIRYLSLHDN-KYLRYFPGH----KKRVNSLSVSPKDDTFLSSSLD---------KTVRLWDLRVKK---CQGLLNLS  141 (311)
T ss_pred             CCceEEEEeecC-ceEEEcCCC----CceEEEEEecCCCCeEEecccC---------CeEEeeEecCCC---CceEEecC
Confidence            556888888765 344544433    5678889999988655444443         357777887554   33222111


Q ss_pred             CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC--CceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCC
Q 006979          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN--GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK  321 (623)
Q Consensus       244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~  321 (623)
                      .- .-+++.|.|=  +|....+.      ..|.++|+..-  |+.....+..+..    .......|||||+.+.++.. 
T Consensus       142 ~~-pi~AfDp~GL--ifA~~~~~------~~IkLyD~Rs~dkgPF~tf~i~~~~~----~ew~~l~FS~dGK~iLlsT~-  207 (311)
T KOG1446|consen  142 GR-PIAAFDPEGL--IFALANGS------ELIKLYDLRSFDKGPFTTFSITDNDE----AEWTDLEFSPDGKSILLSTN-  207 (311)
T ss_pred             CC-cceeECCCCc--EEEEecCC------CeEEEEEecccCCCCceeEccCCCCc----cceeeeEEcCCCCEEEEEeC-
Confidence            11 1257999995  44443432      25777887642  3211111111112    34467899999994444543 


Q ss_pred             CCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979          322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (623)
Q Consensus       322 ~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~  394 (623)
                      .+  .++.+|.=+|....=..+...-...   +  -+-.+.   ||++ +++....+|.-++|.+  +++...
T Consensus       208 ~s--~~~~lDAf~G~~~~tfs~~~~~~~~---~--~~a~ft---Pds~-Fvl~gs~dg~i~vw~~--~tg~~v  267 (311)
T KOG1446|consen  208 AS--FIYLLDAFDGTVKSTFSGYPNAGNL---P--LSATFT---PDSK-FVLSGSDDGTIHVWNL--ETGKKV  267 (311)
T ss_pred             CC--cEEEEEccCCcEeeeEeeccCCCCc---c--eeEEEC---CCCc-EEEEecCCCcEEEEEc--CCCcEe
Confidence            23  4666776666533222111110100   0  012232   2654 5666667787777765  455443

>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH

Probab=97.80  E-value=3.4e-05  Score=74.20  Aligned_cols=53  Identities=19%  Similarity=0.183  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .+-+..|++||.+++.++++||+|+|.|.||.++|.++ .++ .++|+|+.+|-.
T Consensus         3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~   56 (213)
T PF08840_consen    3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSS   56 (213)
T ss_dssp             CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--S
T ss_pred             hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCce
Confidence            45678999999999999999999999999999999999 666 799999998854

Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=97.80  E-value=0.03  Score=60.60  Aligned_cols=221  Identities=8%  Similarity=-0.014  Sum_probs=126.2

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~  270 (623)
                      ...+.+..|||++.++++.+..+.    ..-.|.+.|+.+|+... ..+.   .......|.+|++.++|++.++..   
T Consensus       129 ~~Lg~~~~s~D~~~la~s~D~~G~----e~y~lr~kdL~tg~~~~-d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~---  197 (682)
T COG1770         129 FSLGAASISPDHNLLAYSVDVLGD----EQYTLRFKDLATGEELP-DEIT---NTSGSFAWAADGKTLFYTRLDENH---  197 (682)
T ss_pred             eeeeeeeeCCCCceEEEEEecccc----cEEEEEEEecccccccc-hhhc---ccccceEEecCCCeEEEEEEcCCC---
Confidence            455678899999999997665433    24778899999986211 1121   123456799999999999977654   


Q ss_pred             CceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCC--eEEEEeecccccc
Q 006979          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFS  348 (623)
Q Consensus       271 ~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~--~~~~l~~~~~~~~  348 (623)
                      .-.+||.-.+.+... ..+.+....++.   ..-...=+...+.+++...+....+++.++.+..  +.+.+.+....+ 
T Consensus       198 rp~kv~~h~~gt~~~-~d~lvyeE~d~~---f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~-  272 (682)
T COG1770         198 RPDKVWRHRLGTPGS-SDELVYEEKDDR---FFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGV-  272 (682)
T ss_pred             CcceEEEEecCCCCC-cceEEEEcCCCc---EEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCc-
Confidence            245688888776321 234455544422   2222233444454444433244556666665543  455665542211 


Q ss_pred             cccccccCcceeEEeecCCCCEEEEEEEECC-eEEEEEEeC--CCCceeecccCCcc--eEeeeecCCEEEEEEecCCCC
Q 006979          349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDD--FGHSLSLLDIPFTD--IDNITLGNDCLFVEGASGVEP  423 (623)
Q Consensus       349 ~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-~~~L~~~d~--~~~~~~~lt~~~~~--v~~~~~~~~~~~~~~~s~~~~  423 (623)
                        ..       ..-   ..++.+|+.++.+| ..+|++...  ....++.+......  +.+++.-.+.+++...... -
T Consensus       273 --eY-------~~e---h~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~g-l  339 (682)
T COG1770         273 --EY-------SVE---HGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEG-L  339 (682)
T ss_pred             --EE-------eee---ecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccC-C
Confidence              11       111   14677888888777 556776655  22344443333222  4455555666666654443 4


Q ss_pred             CeEEEEEcCCCcceeee
Q 006979          424 SSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       424 ~~ly~~~l~~~~~~~lt  440 (623)
                      +.++..+..+++.+.|.
T Consensus       340 p~v~v~~~~~~~~~~i~  356 (682)
T COG1770         340 PRVVVRDRKTGEERGIA  356 (682)
T ss_pred             ceEEEEecCCCceeeEE
Confidence            57888888777655544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.80  E-value=0.00072  Score=67.81  Aligned_cols=241  Identities=12%  Similarity=0.032  Sum_probs=127.8

Q ss_pred             ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCE-EEEEeCCCCcEE
Q 006979           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYKDQRLY  168 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~-l~f~~~~~~~l~  168 (623)
                      .+..+.|||+++.. +.-..+|    .++.++..+| ..+...+..       ++....+-+|-+|. -++....+.+++
T Consensus       271 ~V~yi~wSPDdryL-laCg~~e----~~~lwDv~tg-d~~~~y~~~-------~~~S~~sc~W~pDg~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  271 PVSYIMWSPDDRYL-LACGFDE----VLSLWDVDTG-DLRHLYPSG-------LGFSVSSCAWCPDGFRFVTGSPDRTII  337 (519)
T ss_pred             ceEEEEECCCCCeE-EecCchH----heeeccCCcc-hhhhhcccC-------cCCCcceeEEccCCceeEecCCCCcEE
Confidence            34567788744322 2222322    2556666544 445555543       12234455566663 234445567799


Q ss_pred             EEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccc
Q 006979          169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF  248 (623)
Q Consensus       169 ~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~  248 (623)
                      .+|+++.  ....-..   ....+..|.+.++||++++.+..+         ..+..++..+..   .+.+.....-...
T Consensus       338 ~wdlDgn--~~~~W~g---vr~~~v~dlait~Dgk~vl~v~~d---------~~i~l~~~e~~~---dr~lise~~~its  400 (519)
T KOG0293|consen  338 MWDLDGN--ILGNWEG---VRDPKVHDLAITYDGKYVLLVTVD---------KKIRLYNREARV---DRGLISEEQPITS  400 (519)
T ss_pred             EecCCcc--hhhcccc---cccceeEEEEEcCCCcEEEEEecc---------cceeeechhhhh---hhccccccCceeE
Confidence            9999864  2111111   112347789999999999988765         346777776653   3334444444455


Q ss_pred             eeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979          249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH  328 (623)
Q Consensus       249 p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~  328 (623)
                      ...|-||+++...- .       ..++++.|+++..   ..+...|....  .++-+-.|.--..-+..+..  ...++|
T Consensus       401 ~~iS~d~k~~LvnL-~-------~qei~LWDl~e~~---lv~kY~Ghkq~--~fiIrSCFgg~~~~fiaSGS--ED~kvy  465 (519)
T KOG0293|consen  401 FSISKDGKLALVNL-Q-------DQEIHLWDLEENK---LVRKYFGHKQG--HFIIRSCFGGGNDKFIASGS--EDSKVY  465 (519)
T ss_pred             EEEcCCCcEEEEEc-c-------cCeeEEeecchhh---HHHHhhccccc--ceEEEeccCCCCcceEEecC--CCceEE
Confidence            78999999654432 1       2347888887541   11122222211  12222233221112223322  334677


Q ss_pred             EEecCCCeEEEEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          329 KWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       329 ~~d~~~~~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                      .++..++++..+..+ ...+.-.+|.+            .+...+.++.++|.-+||-.+
T Consensus       466 IWhr~sgkll~~LsGHs~~vNcVswNP------------~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  466 IWHRISGKLLAVLSGHSKTVNCVSWNP------------ADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             EEEccCCceeEeecCCcceeeEEecCC------------CCHHHhhccCCCCeEEEecCC
Confidence            777777775554433 22222234543            666777777788888887554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.79  E-value=0.00061  Score=67.70  Aligned_cols=115  Identities=10%  Similarity=0.095  Sum_probs=68.4

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      .+|++.+..-.+ +.+.+++.....+++..|||||++||-.+.|.+        +.+.+-.++.   ....+.+.-    
T Consensus       346 ~tlflW~p~~~k-kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS--------VkLW~g~tGk---~lasfRGHv----  409 (480)
T KOG0271|consen  346 FTLFLWNPFKSK-KPITRMTGHQALVNHVSFSPDGRYIASASFDKS--------VKLWDGRTGK---FLASFRGHV----  409 (480)
T ss_pred             ceEEEecccccc-cchhhhhchhhheeeEEECCCccEEEEeecccc--------eeeeeCCCcc---hhhhhhhcc----
Confidence            568888764322 113455665667888999999999998887764        4444555552   222334433    


Q ss_pred             ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccc
Q 006979          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVF  354 (623)
Q Consensus       301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~  354 (623)
                      ..+.+.+|+.|.+|++.... +.  .|-.++..+.++..=.+ ...++-...|++
T Consensus       410 ~~VYqvawsaDsRLlVS~Sk-Ds--TLKvw~V~tkKl~~DLpGh~DEVf~vDwsp  461 (480)
T KOG0271|consen  410 AAVYQVAWSADSRLLVSGSK-DS--TLKVWDVRTKKLKQDLPGHADEVFAVDWSP  461 (480)
T ss_pred             ceeEEEEeccCccEEEEcCC-Cc--eEEEEEeeeeeecccCCCCCceEEEEEecC
Confidence            56789999999986655443 33  34445555555443223 233444455654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.79  E-value=0.001  Score=68.67  Aligned_cols=256  Identities=12%  Similarity=0.041  Sum_probs=129.4

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC-------CCCCccceeeeecCCceEEEeCCEEEEE
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-------PKEYAVRTTAQEYGGGAFRIFGDTVIFS  160 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~-------p~~~~~r~~~~~~g~~~~~~s~d~l~f~  160 (623)
                      ..++.+++++ ++.+.-+....+      .-.++.+  |....-+       -+-.+-...+.+.--++|.+.....+.+
T Consensus       215 h~i~sl~ys~Tg~~iLvvsg~aq------akl~DRd--G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT  286 (641)
T KOG0772|consen  215 HQINSLQYSVTGDQILVVSGSAQ------AKLLDRD--GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLT  286 (641)
T ss_pred             cccceeeecCCCCeEEEEecCcc------eeEEccC--CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEE
Confidence            3457888888 777776663322      2222222  1110001       0111223333444455666655556666


Q ss_pred             eCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec
Q 006979          161 NYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL  239 (623)
Q Consensus       161 ~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l  239 (623)
                      ...|+.|.+|++.......+.+... .+........-+|+|||++|+..+.|.         .|-.++..+-.+. +.-.
T Consensus       287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---------SIQ~W~~~~~~v~-p~~~  356 (641)
T KOG0772|consen  287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---------SIQIWDKGSRTVR-PVMK  356 (641)
T ss_pred             ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---------ceeeeecCCcccc-cceE
Confidence            6678878888876431222233221 111122344567999999988877653         3445554332210 1111


Q ss_pred             ccC----CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979          240 VSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (623)
Q Consensus       240 ~~~----~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~  315 (623)
                      ...    ..-.....||+||++|+--..|+        .|-+.|+..-..  ...+..+....  ..-.+..||||.+|+
T Consensus       357 vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~--------tLKvWDLrq~kk--pL~~~tgL~t~--~~~tdc~FSPd~kli  424 (641)
T KOG0772|consen  357 VKDAHLPGQDITSISFSYDGNYLLSRGFDD--------TLKVWDLRQFKK--PLNVRTGLPTP--FPGTDCCFSPDDKLI  424 (641)
T ss_pred             eeeccCCCCceeEEEeccccchhhhccCCC--------ceeeeecccccc--chhhhcCCCcc--CCCCccccCCCceEE
Confidence            111    11245578999999987544333        377778765421  11111222211  223578999999977


Q ss_pred             EEEeC---CCCeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          316 FVTDR---KNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       316 ~~~~~---~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      +....   +.....|+.+|..+-+ ...|.-....+....|.+            .-+.|++.+ .+|..++| ||.
T Consensus       425 ~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp------------kLNQi~~gs-gdG~~~vy-Ydp  487 (641)
T KOG0772|consen  425 LTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP------------KLNQIFAGS-GDGTAHVY-YDP  487 (641)
T ss_pred             EecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc------------hhhheeeec-CCCceEEE-ECc
Confidence            65432   1223478888876533 223332334444556665            444555443 35666665 443

>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function

Probab=97.79  E-value=0.00026  Score=71.30  Aligned_cols=125  Identities=16%  Similarity=0.016  Sum_probs=81.1

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh--HHHhhc----
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE--FRERLL----  547 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~--~~~~~~----  547 (623)
                      ..+..+..|+..+     ....|++|++.|.+..........++.-+.+.|++.+.+..+-.|..-..  .+..+.    
T Consensus        76 ~a~~~~~~P~~~~-----~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsD  150 (348)
T PF09752_consen   76 TARFQLLLPKRWD-----SPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSD  150 (348)
T ss_pred             heEEEEEECCccc-----cCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhH
Confidence            3555666677521     34579999888874433333344557778888999999875532211000  000000    


Q ss_pred             -cCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          548 -GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       548 -~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                       -..|...+.++...++|+.++|+   .+++|.|.||||+++.+++ ..|..+.++-+.++
T Consensus       151 l~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~  208 (348)
T PF09752_consen  151 LFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSW  208 (348)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecc
Confidence             01344557788899999999975   5999999999999999988 67776665555544

>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]

Probab=97.77  E-value=0.00011  Score=71.95  Aligned_cols=136  Identities=18%  Similarity=0.119  Sum_probs=82.6

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHc----CceEEEEECCCCCCC
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS----RGWAFVDVNYGGSTG  537 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~----~G~~v~~~d~rGs~~  537 (623)
                      +.+.+.+. -..+....+|.|.+  |.+  ..++|++++.||--+.....-. .....+..    ..-+++.+|+--...
T Consensus        70 ~~~~~~~~-l~~~~~~vv~lppg--y~~--~~k~pvl~~~DG~~~~~~g~i~-~~~dsli~~g~i~pai~vgid~~d~~~  143 (299)
T COG2382          70 EEILYSSE-LLSERRRVVYLPPG--YNP--LEKYPVLYLQDGQDWFRSGRIP-RILDSLIAAGEIPPAILVGIDYIDVKK  143 (299)
T ss_pred             hhhhhhhh-hccceeEEEEeCCC--CCc--cccccEEEEeccHHHHhcCChH-HHHHHHHHcCCCCCceEEecCCCCHHH
Confidence            34444433 22345556677766  554  7899999999986333222221 12233333    356788888642111


Q ss_pred             CchhHHHhhccCCccc-hH-HH-HHHHHHHHHhCCC--CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          538 YGREFRERLLGRWGIV-DV-ND-CCSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       538 ~g~~~~~~~~~~~g~~-~~-~D-~~~~~~~l~~~~~--~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      ..+        .++.. +. +. ..+.+-++.+.-.  -++++-+++|.|+||.++++++ .||+.|-++++++|..++.
T Consensus       144 R~~--------~~~~n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~  215 (299)
T COG2382         144 RRE--------ELHCNEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT  215 (299)
T ss_pred             HHH--------HhcccHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence            111        11111 11 11 2234445655422  4677889999999999999999 8999999999999988764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.76  E-value=0.0011  Score=63.37  Aligned_cols=155  Identities=14%  Similarity=0.135  Sum_probs=97.0

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +...+.+.| ..+++...|+.+.++|+.+| ...+++...    ...+...++|||.++|+--+.|         ..|-+
T Consensus        66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g-~~t~~f~GH----~~dVlsva~s~dn~qivSGSrD---------kTikl  131 (315)
T KOG0279|consen   66 VSDVVLSSDGNFALSASWDGTLRLWDLATG-ESTRRFVGH----TKDVLSVAFSTDNRQIVSGSRD---------KTIKL  131 (315)
T ss_pred             ecceEEccCCceEEeccccceEEEEEecCC-cEEEEEEec----CCceEEEEecCCCceeecCCCc---------ceeee
Confidence            334445545 67778778888999999987 233444332    3345678899999998765443         45677


Q ss_pred             EEcCCCCcccceecccC--CCcccceeeCCCCCEEEEE--EecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc
Q 006979          226 IALNGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWI--EWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~--~~~~~~p~wSPDG~~la~~--~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~  301 (623)
                      ++.-++-   .-.+.++  .+.+...+|||...-...+  +||.        .+-+.|+++-   ..+..+.+..    .
T Consensus       132 wnt~g~c---k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk--------tvKvWnl~~~---~l~~~~~gh~----~  193 (315)
T KOG0279|consen  132 WNTLGVC---KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK--------TVKVWNLRNC---QLRTTFIGHS----G  193 (315)
T ss_pred             eeecccE---EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc--------eEEEEccCCc---chhhcccccc----c
Confidence            7776654   3334433  5788889999995434444  3443        2667777654   2344455555    7


Q ss_pred             cCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       302 ~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                      ++.....||||.+.. +..+.|  .++.+|++.++
T Consensus       194 ~v~t~~vSpDGslca-sGgkdg--~~~LwdL~~~k  225 (315)
T KOG0279|consen  194 YVNTVTVSPDGSLCA-SGGKDG--EAMLWDLNEGK  225 (315)
T ss_pred             cEEEEEECCCCCEEe-cCCCCc--eEEEEEccCCc
Confidence            888999999997443 322234  45555665554

>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters

Probab=97.75  E-value=0.00015  Score=74.20  Aligned_cols=116  Identities=18%  Similarity=0.256  Sum_probs=76.4

Q ss_pred             EEEEc-CCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC-----HHhHHHHcCceEEEEECCCCCC--CCchhHHHhhcc
Q 006979          477 AYYYP-PSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-----LSIQYWTSRGWAFVDVNYGGST--GYGREFRERLLG  548 (623)
Q Consensus       477 ~~l~~-P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~-----~~~~~~a~~G~~v~~~d~rGs~--~~g~~~~~~~~~  548 (623)
                      .|+.. |..  ++   .+.-|+||++|||+.........     .....+ + ..++++.||.-..  ..|..|      
T Consensus       108 ~Wlvk~P~~--~~---pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l-~-~~SILvLDYsLt~~~~~~~~y------  174 (374)
T PF10340_consen  108 YWLVKAPNR--FK---PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLL-P-EVSILVLDYSLTSSDEHGHKY------  174 (374)
T ss_pred             EEEEeCCcc--cC---CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHc-C-CCeEEEEeccccccccCCCcC------
Confidence            47776 654  11   23349999999995332221111     122222 2 4589999987543  222222      


Q ss_pred             CCccchHHHHHHHHHHHH-hCCCCCCCceEEEEcChHHHHHHHHhc---CC---CceeEEEecccCCCHH
Q 006979          549 RWGIVDVNDCCSCATFLV-GSGKADEKRLCITGGSAGGYTTLAALA---FR---DTFKAGASLYGVSIPV  611 (623)
Q Consensus       549 ~~g~~~~~D~~~~~~~l~-~~~~~d~~rv~i~G~S~GG~~~~~~~~---~~---~~f~a~v~~~g~~d~~  611 (623)
                         .....+++++.++|+ ++|   .++|.+||-|+||.+++.++.   +.   ..-+.+|+++|-+++.
T Consensus       175 ---PtQL~qlv~~Y~~Lv~~~G---~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~  238 (374)
T PF10340_consen  175 ---PTQLRQLVATYDYLVESEG---NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV  238 (374)
T ss_pred             ---chHHHHHHHHHHHHHhccC---CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence               234778999999999 555   479999999999999997773   21   2347999999998886

In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].

>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]

Probab=97.75  E-value=0.00011  Score=76.27  Aligned_cols=141  Identities=20%  Similarity=0.226  Sum_probs=101.8

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC----CHHhHHHHcCceEEEEECCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGG  534 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~----~~~~~~~a~~G~~v~~~d~rG  534 (623)
                      -..|...+.+. ||..+. +--.|..       .++.|+|++.||--.+....-.    ...+-.|+++||-|-.=|.||
T Consensus        46 y~~E~h~V~T~-DgYiL~-lhRIp~~-------~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG  116 (403)
T KOG2624|consen   46 YPVEEHEVTTE-DGYILT-LHRIPRG-------KKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG  116 (403)
T ss_pred             CceEEEEEEcc-CCeEEE-EeeecCC-------CCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC
Confidence            36788888887 998444 4445654       3678999999997544433221    245667899999999999999


Q ss_pred             CCCCchhHHHhhcc--------CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC---ceeEEE
Q 006979          535 STGYGREFRERLLG--------RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD---TFKAGA  602 (623)
Q Consensus       535 s~~~g~~~~~~~~~--------~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~---~f~a~v  602 (623)
                       ..|.+........        .|-+....|+-+.++|+.+.  ...+++..+|||.|+.....++ .+|+   .++..+
T Consensus       117 -n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~  193 (403)
T KOG2624|consen  117 -NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFI  193 (403)
T ss_pred             -cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheee
Confidence             5666654332221        13344567999999999876  3468999999999999998888 5543   788999


Q ss_pred             ecccCCCHH
Q 006979          603 SLYGVSIPV  611 (623)
Q Consensus       603 ~~~g~~d~~  611 (623)
                      +.+|++-+.
T Consensus       194 aLAP~~~~k  202 (403)
T KOG2624|consen  194 ALAPAAFPK  202 (403)
T ss_pred             eecchhhhc
Confidence            999988443

>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins

Probab=97.74  E-value=0.00061  Score=67.81  Aligned_cols=141  Identities=16%  Similarity=0.122  Sum_probs=89.3

Q ss_pred             CCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc----C-CHHhHHHHcCceEEEEE
Q 006979          456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI----L-NLSIQYWTSRGWAFVDV  530 (623)
Q Consensus       456 ~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~----~-~~~~~~~a~~G~~v~~~  530 (623)
                      .......++.+..  |+..|..+...-.+       .++.-.||+.-|.........    . .......-+.|..|+.+
T Consensus       107 ~~~~~~kRv~Iq~--D~~~IDt~~I~~~~-------a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~f  177 (365)
T PF05677_consen  107 DEVSSVKRVPIQY--DGVKIDTMAIHQPE-------AKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVF  177 (365)
T ss_pred             ccccceeeEEEee--CCEEEEEEEeeCCC-------CCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEE
Confidence            3345666777776  78888877664222       233457888877632222111    1 23334444579999999


Q ss_pred             CCCCCCCC-chhHHHhhccCCccchHHHHHHHHHHHHhCC-CCCCCceEEEEcChHHHHHHHHhc-C----CCcee-EEE
Q 006979          531 NYGGSTGY-GREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRLCITGGSAGGYTTLAALA-F----RDTFK-AGA  602 (623)
Q Consensus       531 d~rGs~~~-g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~-~~d~~rv~i~G~S~GG~~~~~~~~-~----~~~f~-a~v  602 (623)
                      ||||-|.+ |..-        ...-+.|..++++||.++. -+.+++|.+.|||.||.++..++. +    .|-.+ .+|
T Consensus       178 NYpGVg~S~G~~s--------~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~i  249 (365)
T PF05677_consen  178 NYPGVGSSTGPPS--------RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLI  249 (365)
T ss_pred             CCCccccCCCCCC--------HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEE
Confidence            99995542 2111        1234789999999999754 367899999999999999888773 3    22222 345


Q ss_pred             ecccCCCHHHh
Q 006979          603 SLYGVSIPVII  613 (623)
Q Consensus       603 ~~~g~~d~~~~  613 (623)
                      ..-+++++...
T Consensus       250 kDRsfssl~~v  260 (365)
T PF05677_consen  250 KDRSFSSLAAV  260 (365)
T ss_pred             ecCCcchHHHH
Confidence            55666666543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.73  E-value=0.0089  Score=64.67  Aligned_cols=220  Identities=12%  Similarity=0.047  Sum_probs=133.0

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      +|.|+|-...-|+|.+++..+.   .-.|...  .-..+.+...+||||++|+.-.+|         +.+-++|..+|- 
T Consensus       319 GDWiA~g~~klgQLlVweWqsE---sYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eD---------gKVKvWn~~Sgf-  383 (893)
T KOG0291|consen  319 GDWIAFGCSKLGQLLVWEWQSE---SYVLKQQ--GHSDRITSLAYSPDGQLIATGAED---------GKVKVWNTQSGF-  383 (893)
T ss_pred             CCEEEEcCCccceEEEEEeecc---ceeeecc--ccccceeeEEECCCCcEEEeccCC---------CcEEEEeccCce-
Confidence            5667776555678888877643   2223221  013456678899999988776655         456677877764 


Q ss_pred             ccce-ecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          234 QEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       234 ~~~~-~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                        .. ..++...-+....|+.+|+-|+-.+.|.        .+...|+.-..   .-+.++...+   ....-.+-.|.|
T Consensus       384 --C~vTFteHts~Vt~v~f~~~g~~llssSLDG--------tVRAwDlkRYr---NfRTft~P~p---~QfscvavD~sG  447 (893)
T KOG0291|consen  384 --CFVTFTEHTSGVTAVQFTARGNVLLSSSLDG--------TVRAWDLKRYR---NFRTFTSPEP---IQFSCVAVDPSG  447 (893)
T ss_pred             --EEEEeccCCCceEEEEEEecCCEEEEeecCC--------eEEeeeecccc---eeeeecCCCc---eeeeEEEEcCCC
Confidence              22 2333333456678999999776555443        25566665442   3344443331   333445556668


Q ss_pred             cEEEEEeCCCCeeeEEEEecCCCeEEEEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCC
Q 006979          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH  391 (623)
Q Consensus       313 ~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~  391 (623)
                      .+++....  +...|+.++.++|++..+..+ +..+....+.+            .+. ++++...+...++|-+=-..+
T Consensus       448 elV~AG~~--d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~------------~~~-~LaS~SWDkTVRiW~if~s~~  512 (893)
T KOG0291|consen  448 ELVCAGAQ--DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP------------DGS-LLASGSWDKTVRIWDIFSSSG  512 (893)
T ss_pred             CEEEeecc--ceEEEEEEEeecCeeeehhcCCCCcceeeEEcc------------ccC-eEEeccccceEEEEEeeccCc
Confidence            77776654  778999999999987776643 33333322221            444 566666777778876655566


Q ss_pred             ceeecccCCcceE-eeeecCCEEEEEEec
Q 006979          392 SLSLLDIPFTDID-NITLGNDCLFVEGAS  419 (623)
Q Consensus       392 ~~~~lt~~~~~v~-~~~~~~~~~~~~~~s  419 (623)
                      +++.|........ .+.++|+++.+...+
T Consensus       513 ~vEtl~i~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  513 TVETLEIRSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             eeeeEeeccceeEEEEcCCCCeEEEEEec
Confidence            7777665432221 237888888776543

>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO

Probab=97.71  E-value=0.00016  Score=67.49  Aligned_cols=94  Identities=14%  Similarity=0.148  Sum_probs=63.9

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCc--eEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRG--WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G--~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      +|+++||.-.+..+.......++++++|  ..+..+|++-                   ..++..+.++.++++.  .++
T Consensus         1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~   59 (187)
T PF05728_consen    1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPE   59 (187)
T ss_pred             CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCC
Confidence            3899999854444444456677788776  4456666542                   2455666666666653  234


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~  614 (623)
                      .+.|+|.|+|||.+.+++ .++  +++ |.+.|..+....+
T Consensus        60 ~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l   97 (187)
T PF05728_consen   60 NVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELL   97 (187)
T ss_pred             CeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHH
Confidence            599999999999999998 554  445 8888887765443

One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.70  E-value=0.065  Score=55.94  Aligned_cols=208  Identities=14%  Similarity=0.093  Sum_probs=109.2

Q ss_pred             HHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEE
Q 006979           81 ADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS  160 (623)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~  160 (623)
                      +..+....+.+..+.++|++...+...-   +|...-|  +.++| ..-.+.+..       |..-+..++.+...-+|+
T Consensus       313 ~~~i~GHnK~ITaLtv~~d~~~i~Sgsy---DG~I~~W--~~~~g-~~~~~~g~~-------h~nqI~~~~~~~~~~~~t  379 (603)
T KOG0318|consen  313 LKVISGHNKSITALTVSPDGKTIYSGSY---DGHINSW--DSGSG-TSDRLAGKG-------HTNQIKGMAASESGELFT  379 (603)
T ss_pred             hheecccccceeEEEEcCCCCEEEeecc---CceEEEE--ecCCc-ccccccccc-------ccceEEEEeecCCCcEEE
Confidence            4445556778888999983333333222   3664444  44433 444454433       222244555554222334


Q ss_pred             eCCCCcEEEEeCCCCCC-CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec
Q 006979          161 NYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL  239 (623)
Q Consensus       161 ~~~~~~l~~~d~~~g~~-~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l  239 (623)
                      -.-|..|.++++..+.- ....+.-+     .+--..+.++||..++.+..          .+|.++.-.++    +..+
T Consensus       380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg-----~QP~~lav~~d~~~avv~~~----------~~iv~l~~~~~----~~~~  440 (603)
T KOG0318|consen  380 IGWDDTLRVISLKDNGYTKSEVVKLG-----SQPKGLAVLSDGGTAVVACI----------SDIVLLQDQTK----VSSI  440 (603)
T ss_pred             EecCCeEEEEecccCcccccceeecC-----CCceeEEEcCCCCEEEEEec----------CcEEEEecCCc----ceee
Confidence            33455699888854310 11111111     11123556777766666665          33555542222    2222


Q ss_pred             ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEe
Q 006979          240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD  319 (623)
Q Consensus       240 ~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~  319 (623)
                      .-+.. ....+.+||++.++.-. .       ...|+++.+.+++..++. ++....    ..+...++||||+.+...|
T Consensus       441 ~~~y~-~s~vAv~~~~~~vaVGG-~-------Dgkvhvysl~g~~l~ee~-~~~~h~----a~iT~vaySpd~~yla~~D  506 (603)
T KOG0318|consen  441 PIGYE-SSAVAVSPDGSEVAVGG-Q-------DGKVHVYSLSGDELKEEA-KLLEHR----AAITDVAYSPDGAYLAAGD  506 (603)
T ss_pred             ccccc-cceEEEcCCCCEEEEec-c-------cceEEEEEecCCccccee-eeeccc----CCceEEEECCCCcEEEEec
Confidence            21111 23356999999887554 2       234899999876432222 233333    5678899999998555555


Q ss_pred             CCCCeeeEEEEecCCCeE
Q 006979          320 RKNGFWNLHKWIESNNEV  337 (623)
Q Consensus       320 ~~~g~~~L~~~d~~~~~~  337 (623)
                      . .  ..+..+|..+.+.
T Consensus       507 a-~--rkvv~yd~~s~~~  521 (603)
T KOG0318|consen  507 A-S--RKVVLYDVASREV  521 (603)
T ss_pred             c-C--CcEEEEEcccCce
Confidence            5 3  3566677766654

>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]

Probab=97.69  E-value=9.9e-05  Score=75.67  Aligned_cols=100  Identities=16%  Similarity=0.229  Sum_probs=67.6

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHcC-ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~-G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~  571 (623)
                      ...|-||++||...  ....|+.....+... |+.|+++|..|. |+... .+  .+  ......+....+..+......
T Consensus        56 ~~~~pvlllHGF~~--~~~~w~~~~~~L~~~~~~~v~aiDl~G~-g~~s~-~~--~~--~~y~~~~~v~~i~~~~~~~~~  127 (326)
T KOG1454|consen   56 KDKPPVLLLHGFGA--SSFSWRRVVPLLSKAKGLRVLAIDLPGH-GYSSP-LP--RG--PLYTLRELVELIRRFVKEVFV  127 (326)
T ss_pred             CCCCcEEEeccccC--CcccHhhhccccccccceEEEEEecCCC-CcCCC-CC--CC--CceehhHHHHHHHHHHHhhcC
Confidence            44577888999843  444555444445443 799999999993 32111 11  11  114566666666655544322


Q ss_pred             CCCceEEEEcChHHHHHHHHh-cCCCceeEEE
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-AFRDTFKAGA  602 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v  602 (623)
                        +++.++|||+||++++.++ .+|+.++..|
T Consensus       128 --~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv  157 (326)
T KOG1454|consen  128 --EPVSLVGHSLGGIVALKAAAYYPETVDSLV  157 (326)
T ss_pred             --cceEEEEeCcHHHHHHHHHHhCccccccee
Confidence              4599999999999999999 8999999999

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.69  E-value=0.0014  Score=63.68  Aligned_cols=259  Identities=11%  Similarity=-0.011  Sum_probs=142.8

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccee--eeecCCceEEEeCC-EEEEEeCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTT--AQEYGGGAFRIFGD-TVIFSNYK  163 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~--~~~~g~~~~~~s~d-~l~f~~~~  163 (623)
                      ...++..++|| |+.+  +.  +.-+|-..+|.+..+   +.++-+-  +.+...  .++-...++.++.| .++.+...
T Consensus       213 KSh~EcA~FSPDgqyL--vs--gSvDGFiEVWny~~G---KlrKDLk--YQAqd~fMMmd~aVlci~FSRDsEMlAsGsq  283 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYL--VS--GSVDGFIEVWNYTTG---KLRKDLK--YQAQDNFMMMDDAVLCISFSRDSEMLASGSQ  283 (508)
T ss_pred             ccchhheeeCCCCceE--ee--ccccceeeeehhccc---hhhhhhh--hhhhcceeecccceEEEeecccHHHhhccCc
Confidence            44567788898 5533  22  222577778877544   4433221  111100  01112334445544 44445556


Q ss_pred             CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~  243 (623)
                      ||.|-++...+| .-.++....   -...+...+||.|+.+|+-...|         ..+.+.-+.+|+.  .+.+....
T Consensus       284 DGkIKvWri~tG-~ClRrFdrA---HtkGvt~l~FSrD~SqiLS~sfD---------~tvRiHGlKSGK~--LKEfrGHs  348 (508)
T KOG0275|consen  284 DGKIKVWRIETG-QCLRRFDRA---HTKGVTCLSFSRDNSQILSASFD---------QTVRIHGLKSGKC--LKEFRGHS  348 (508)
T ss_pred             CCcEEEEEEecc-hHHHHhhhh---hccCeeEEEEccCcchhhccccc---------ceEEEeccccchh--HHHhcCcc
Confidence            777777777766 233443321   01224567799999888765554         3455556777762  23344445


Q ss_pred             CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCC
Q 006979          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN  322 (623)
Q Consensus       244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~  322 (623)
                      .+++...|++||.+|.-.+.|.        .+-+.+..+.+.+...+. .+.+    ..+..+--.|.+- .+.+.++  
T Consensus       349 Syvn~a~ft~dG~~iisaSsDg--------tvkvW~~KtteC~~Tfk~-~~~d----~~vnsv~~~PKnpeh~iVCNr--  413 (508)
T KOG0275|consen  349 SYVNEATFTDDGHHIISASSDG--------TVKVWHGKTTECLSTFKP-LGTD----YPVNSVILLPKNPEHFIVCNR--  413 (508)
T ss_pred             ccccceEEcCCCCeEEEecCCc--------cEEEecCcchhhhhhccC-CCCc----ccceeEEEcCCCCceEEEEcC--
Confidence            6778888999999998666443        255556555433211111 1122    4555666667665 6667766  


Q ss_pred             CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-eccc
Q 006979          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDI  398 (623)
Q Consensus       323 g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~  398 (623)
                       ...+|.++..+.-.+....+..+-+.         |.--..+|.|.++|+..++   ..||.+...+|.++ .++.
T Consensus       414 -sntv~imn~qGQvVrsfsSGkREgGd---------Fi~~~lSpkGewiYcigED---~vlYCF~~~sG~LE~tl~V  477 (508)
T KOG0275|consen  414 -SNTVYIMNMQGQVVRSFSSGKREGGD---------FINAILSPKGEWIYCIGED---GVLYCFSVLSGKLERTLPV  477 (508)
T ss_pred             -CCeEEEEeccceEEeeeccCCccCCc---------eEEEEecCCCcEEEEEccC---cEEEEEEeecCceeeeeec
Confidence             23588888877666666654333221         2111235588888887643   45788877777665 3443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.66  E-value=0.00038  Score=69.11  Aligned_cols=179  Identities=14%  Similarity=0.075  Sum_probs=103.8

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      +-...|||+|++|+--..|         +.+...|+++..-  .........++...+|||||++||--..        .
T Consensus       118 Vl~~~fsp~g~~l~tGsGD---------~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~~--------d  178 (480)
T KOG0271|consen  118 VLSVQFSPTGSRLVTGSGD---------TTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGSK--------D  178 (480)
T ss_pred             EEEEEecCCCceEEecCCC---------ceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhcccc--------C
Confidence            3456799999988764433         3455567776540  2233344456777889999999985543        3


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC-----CCcEEEEEeCCCCeeeEEEEecCCCe-EEEEeecccc
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-----KGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAE  346 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~-----DG~l~~~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~  346 (623)
                      .+|.+.|..+++.  .-+.+.+..    ..+...+|-|     +.+++ .+..++|.-+||  |...+. .+.+......
T Consensus       179 g~I~lwdpktg~~--~g~~l~gH~----K~It~Lawep~hl~p~~r~l-as~skDg~vrIW--d~~~~~~~~~lsgHT~~  249 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQ--IGRALRGHK----KWITALAWEPLHLVPPCRRL-ASSSKDGSVRIW--DTKLGTCVRTLSGHTAS  249 (480)
T ss_pred             CeEEEecCCCCCc--ccccccCcc----cceeEEeecccccCCCccce-ecccCCCCEEEE--EccCceEEEEeccCccc
Confidence            4588888877753  233445544    3445556644     44433 333335665665  433343 3333333333


Q ss_pred             cccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEeeeecCCEEE
Q 006979          347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF  414 (623)
Q Consensus       347 ~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~~~~~~~~~  414 (623)
                      ++-..|              .|..++++...++.-++|+.. ++.-.+.|.....++..++-..++++
T Consensus       250 VTCvrw--------------GG~gliySgS~DrtIkvw~a~-dG~~~r~lkGHahwvN~lalsTdy~L  302 (480)
T KOG0271|consen  250 VTCVRW--------------GGEGLIYSGSQDRTIKVWRAL-DGKLCRELKGHAHWVNHLALSTDYVL  302 (480)
T ss_pred             eEEEEE--------------cCCceEEecCCCceEEEEEcc-chhHHHhhcccchheeeeeccchhhh
Confidence            333344              566788888888888888764 34455666665555665544444433

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.66  E-value=0.0038  Score=61.06  Aligned_cols=90  Identities=13%  Similarity=0.078  Sum_probs=54.0

Q ss_pred             ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (623)
Q Consensus       301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~  380 (623)
                      .++.-.+|++|...+...++ +=-..||.+|++.-+...+.-....+....|.++            -..|++.   .|.
T Consensus       319 ~g~g~lafs~Ds~y~aTrnd-~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~------------~prL~vc---tg~  382 (447)
T KOG4497|consen  319 CGAGKLAFSCDSTYAATRND-KYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG------------RPRLVVC---TGK  382 (447)
T ss_pred             cccceeeecCCceEEeeecC-CCCceEEEEechhhhhhhhhhhccceeEEEeCCC------------CceEEEE---cCC
Confidence            44566789999854444444 3345789999877765555544445566677763            2334433   366


Q ss_pred             EEEEEEeCCCCceeecccCCcceEee
Q 006979          381 SYLGILDDFGHSLSLLDIPFTDIDNI  406 (623)
Q Consensus       381 ~~L~~~d~~~~~~~~lt~~~~~v~~~  406 (623)
                      +|||...+.+-....++.+.-.+..+
T Consensus       383 srLY~W~psg~~~V~vP~~GF~i~~l  408 (447)
T KOG4497|consen  383 SRLYFWAPSGPRVVGVPKKGFNIQKL  408 (447)
T ss_pred             ceEEEEcCCCceEEecCCCCceeeeE
Confidence            78998888775444554443334444

>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II

Probab=97.65  E-value=0.00039  Score=74.79  Aligned_cols=130  Identities=17%  Similarity=0.180  Sum_probs=84.6

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-----CHHhHHHHcCceEEEEECCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-----NLSIQYWTSRGWAFVDVNYGG  534 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-----~~~~~~~a~~G~~v~~~d~rG  534 (623)
                      +|-.+.|...    .+..+-|.|...+     ..+.|++|+ +.-  ......+     +.+.++++++||-|+.++.+.
T Consensus       190 TPg~VV~~n~----l~eLiqY~P~te~-----v~~~PLLIV-Pp~--INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~n  257 (560)
T TIGR01839       190 TEGAVVFRNE----VLELIQYKPITEQ-----QHARPLLVV-PPQ--INKFYIFDLSPEKSFVQYCLKNQLQVFIISWRN  257 (560)
T ss_pred             CCCceeEECC----ceEEEEeCCCCCC-----cCCCcEEEe-chh--hhhhheeecCCcchHHHHHHHcCCeEEEEeCCC
Confidence            4556666542    3555667775421     344576664 433  2111112     468999999999999999987


Q ss_pred             CCCCchhHHHhhccCCccch-HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHH----Hh-cCCC-ceeEEEecccC
Q 006979          535 STGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA----AL-AFRD-TFKAGASLYGV  607 (623)
Q Consensus       535 s~~~g~~~~~~~~~~~g~~~-~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~----~~-~~~~-~f~a~v~~~g~  607 (623)
                      -+   .+     ..+++..+ ++.+.+|++.+.+.  ...++|-++|+|+||.+++.    ++ .+++ +++.++.+..+
T Consensus       258 P~---~~-----~r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatp  327 (560)
T TIGR01839       258 PD---KA-----HREWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSL  327 (560)
T ss_pred             CC---hh-----hcCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecc
Confidence            32   21     23344332 24677788888765  34579999999999999985    34 5675 79999988887


Q ss_pred             CCHH
Q 006979          608 SIPV  611 (623)
Q Consensus       608 ~d~~  611 (623)
                      .|..
T Consensus       328 lDf~  331 (560)
T TIGR01839       328 LDST  331 (560)
T ss_pred             cccC
Confidence            7753

This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=97.64  E-value=0.027  Score=54.01  Aligned_cols=166  Identities=12%  Similarity=0.128  Sum_probs=96.2

Q ss_pred             eeecceeeCCC-CCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce-ecccCC-CcccceeeCCCCCEEEEEEecCCC
Q 006979          191 VSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGS-DFYAFPRMDPRGERMAWIEWHHPN  267 (623)
Q Consensus       191 ~~~~d~~~sPd-G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~-~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~  267 (623)
                      .|.-..+|+|- |. +++.....        ..|.+.+..++..-..+ .|..+. ..+...+|||.|++|+-.+.|.. 
T Consensus        15 ~r~W~~awhp~~g~-ilAscg~D--------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t-   84 (312)
T KOG0645|consen   15 DRVWSVAWHPGKGV-ILASCGTD--------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT-   84 (312)
T ss_pred             CcEEEEEeccCCce-EEEeecCC--------ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce-
Confidence            46777889998 65 55655432        44666666643211122 233322 23556789999999998876642 


Q ss_pred             CCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE---EEeecc
Q 006979          268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLD  344 (623)
Q Consensus       268 ~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~---~l~~~~  344 (623)
                           ..||-   +.++..+-...+.|.+    ..+..++|+++|.++....+ ...--||.+| .+++..   .|.+..
T Consensus        85 -----~~Iw~---k~~~efecv~~lEGHE----nEVK~Vaws~sG~~LATCSR-DKSVWiWe~d-eddEfec~aVL~~Ht  150 (312)
T KOG0645|consen   85 -----VVIWK---KEDGEFECVATLEGHE----NEVKCVAWSASGNYLATCSR-DKSVWIWEID-EDDEFECIAVLQEHT  150 (312)
T ss_pred             -----EEEee---cCCCceeEEeeeeccc----cceeEEEEcCCCCEEEEeeC-CCeEEEEEec-CCCcEEEEeeecccc
Confidence                 22332   1222223344566665    56778999999996555555 2333456665 334433   333444


Q ss_pred             cccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979          345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (623)
Q Consensus       345 ~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~  394 (623)
                      .++....|.+             -.-|+++..-+..-++|+-+. +..+.
T Consensus       151 qDVK~V~WHP-------------t~dlL~S~SYDnTIk~~~~~~-dddW~  186 (312)
T KOG0645|consen  151 QDVKHVIWHP-------------TEDLLFSCSYDNTIKVYRDED-DDDWE  186 (312)
T ss_pred             ccccEEEEcC-------------CcceeEEeccCCeEEEEeecC-CCCee
Confidence            5666666664             345777777777788887765 44443

>PRK06765 homoserine O-acetyltransferase; Provisional

Probab=97.64  E-value=0.00018  Score=75.60  Aligned_cols=113  Identities=13%  Similarity=0.087  Sum_probs=72.2

Q ss_pred             CCCCEEEEecCCCCCcccC-----cC--CHHhHHH-------HcCceEEEEECCCCCCC--------CchhHHHhhcc--
Q 006979          493 EKPPLLVKSHGGPTSEARG-----IL--NLSIQYW-------TSRGWAFVDVNYGGSTG--------YGREFRERLLG--  548 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~-----~~--~~~~~~~-------a~~G~~v~~~d~rGs~~--------~g~~~~~~~~~--  548 (623)
                      .+-++||++|+-.+.....     ..  ..+...+       =..-|-|+++|.-|++.        .|....+...+  
T Consensus        54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~  133 (389)
T PRK06765         54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP  133 (389)
T ss_pred             CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence            3458999999874322110     00  0111222       22459999999998642        22211111111  


Q ss_pred             ---CCccchHHHHHHHHHHHHhCCCCCCCceE-EEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          549 ---RWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       549 ---~~g~~~~~D~~~~~~~l~~~~~~d~~rv~-i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                         ++....++|+.+++..++++-.+  +++. ++|+||||.+++..+ .+|++++.+|.+++-
T Consensus       134 ~~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~  195 (389)
T PRK06765        134 YGMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGN  195 (389)
T ss_pred             cCCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEecC
Confidence               34456788988888877765333  6775 999999999999988 899999999988653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.64  E-value=0.014  Score=56.35  Aligned_cols=227  Identities=12%  Similarity=0.060  Sum_probs=128.3

Q ss_pred             ceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       148 ~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      -+..|+.| +.+++...+|.|.++|.-+. .+...++-.    ..-+..-+++|.|+++++---|+       .-.||-+
T Consensus        59 ~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~----s~WVMtCA~sPSg~~VAcGGLdN-------~Csiy~l  126 (343)
T KOG0286|consen   59 YAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLP----SSWVMTCAYSPSGNFVACGGLDN-------KCSIYPL  126 (343)
T ss_pred             eeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecC----ceeEEEEEECCCCCeEEecCcCc-------eeEEEec
Confidence            34556666 66777778999999998775 234444432    34455678999999999864432       1345544


Q ss_pred             EcC--CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979          227 ALN--GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       227 dl~--~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  304 (623)
                      ...  .+.....+.|.....+..--+|-+|+. |.--+.        .....+.|++++   .....+.+..    +.+.
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-ilT~SG--------D~TCalWDie~g---~~~~~f~GH~----gDV~  190 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-ILTGSG--------DMTCALWDIETG---QQTQVFHGHT----GDVM  190 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcCCCc-eEecCC--------CceEEEEEcccc---eEEEEecCCc----ccEE
Confidence            433  222222344555556777777888876 443322        223566788877   3455666665    5566


Q ss_pred             CceeCC-CCcEEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEE
Q 006979          305 EPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (623)
Q Consensus       305 ~~~ws~-DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~  382 (623)
                      ....+| |++.+....- +....||  |...+.-++-.. .+.++         ++..|+|   +|. -+.+-.+++.-+
T Consensus       191 slsl~p~~~ntFvSg~c-D~~aklW--D~R~~~c~qtF~ghesDI---------Nsv~ffP---~G~-afatGSDD~tcR  254 (343)
T KOG0286|consen  191 SLSLSPSDGNTFVSGGC-DKSAKLW--DVRSGQCVQTFEGHESDI---------NSVRFFP---SGD-AFATGSDDATCR  254 (343)
T ss_pred             EEecCCCCCCeEEeccc-ccceeee--eccCcceeEeeccccccc---------ceEEEcc---CCC-eeeecCCCceeE
Confidence            777888 7754443322 3444554  555554444332 22233         4556663   544 445566788888


Q ss_pred             EEEEeCCCCceeecccC--CcceEee-eecCCEEEEEEec
Q 006979          383 LGILDDFGHSLSLLDIP--FTDIDNI-TLGNDCLFVEGAS  419 (623)
Q Consensus       383 L~~~d~~~~~~~~lt~~--~~~v~~~-~~~~~~~~~~~~s  419 (623)
                      ||-+..+ .++.....+  ...+.++ ....++++|.+.+
T Consensus       255 lyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~  293 (343)
T KOG0286|consen  255 LYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYD  293 (343)
T ss_pred             EEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeec
Confidence            8755432 333332222  1224444 4556777777643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.60  E-value=0.035  Score=55.35  Aligned_cols=248  Identities=13%  Similarity=0.038  Sum_probs=121.5

Q ss_pred             ceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       148 ~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      .+..++.| .++.+...+|.|.++...+| .....+...    -....-..|+|.+..|++-..+         ..+|.+
T Consensus       110 t~~~FshdgtlLATGdmsG~v~v~~~stg-~~~~~~~~e----~~dieWl~WHp~a~illAG~~D---------GsvWmw  175 (399)
T KOG0296|consen  110 TCCSFSHDGTLLATGDMSGKVLVFKVSTG-GEQWKLDQE----VEDIEWLKWHPRAHILLAGSTD---------GSVWMW  175 (399)
T ss_pred             EEEEEccCceEEEecCCCccEEEEEcccC-ceEEEeecc----cCceEEEEecccccEEEeecCC---------CcEEEE
Confidence            34555555 56666677888888888876 344455422    1112236799998877775544         568888


Q ss_pred             EcCCCCcccceecccCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          227 ALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      .+.++.   .-++..|. .....-+|.||||+|+-...        ...|.+.+..++..   ...+.+.+ .  ....-
T Consensus       176 ~ip~~~---~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~--------dgti~~Wn~ktg~p---~~~~~~~e-~--~~~~~  238 (399)
T KOG0296|consen  176 QIPSQA---LCKVMSGHNSPCTCGEFIPDGKRILTGYD--------DGTIIVWNPKTGQP---LHKITQAE-G--LELPC  238 (399)
T ss_pred             ECCCcc---eeeEecCCCCCcccccccCCCceEEEEec--------CceEEEEecCCCce---eEEecccc-c--CcCCc
Confidence            887754   34444443 33444569999999976642        23478888887732   22222221 1  11223


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~  385 (623)
                      ...+.+|.+++..+. .+  ..+.++..+|+...........-.+.-..+.....+++.+.+= .|.....-+|  .|.+
T Consensus       239 ~~~~~~~~~~~~g~~-e~--~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG--~i~i  312 (399)
T KOG0296|consen  239 ISLNLAGSTLTKGNS-EG--VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDG--TIAI  312 (399)
T ss_pred             cccccccceeEeccC-Cc--cEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc-chhhcccccc--eEEE
Confidence            334445555544444 23  2333444445444333210000000000011111222111111 1222222344  3555


Q ss_pred             EeCCCCceeecccCCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          386 LDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       386 ~d~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      +|+....+|.+-.....|..+ ..+..+++....    ...++..|..+|+.
T Consensus       313 yD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~----~g~v~~wDaRtG~l  360 (399)
T KOG0296|consen  313 YDLAASTLRHICEHEDGVTKLKWLNTDYLLTACA----NGKVRQWDARTGQL  360 (399)
T ss_pred             EecccchhheeccCCCceEEEEEcCcchheeecc----CceEEeeeccccce
Confidence            677776666554433345555 222233332222    24677777777753

>PTZ00420 coronin; Provisional

Probab=97.58  E-value=0.018  Score=63.24  Aligned_cols=220  Identities=10%  Similarity=0.038  Sum_probs=115.6

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKD  164 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~  164 (623)
                      ...+..+.|+| .+.+...-.   ++|...||.....  +.....+.... ..-..|...+.+..++++  .++.+...+
T Consensus        74 ~~~V~~lafsP~~~~lLASgS---~DgtIrIWDi~t~--~~~~~~i~~p~-~~L~gH~~~V~sVaf~P~g~~iLaSgS~D  147 (568)
T PTZ00420         74 TSSILDLQFNPCFSEILASGS---EDLTIRVWEIPHN--DESVKEIKDPQ-CILKGHKKKISIIDWNPMNYYIMCSSGFD  147 (568)
T ss_pred             CCCEEEEEEcCCCCCEEEEEe---CCCeEEEEECCCC--Cccccccccce-EEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence            44567888888 455554432   3577777866432  11111000000 000012222445566654  456666678


Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~  244 (623)
                      +.|.++|+.++ .....+..     ........|+|+|+.|+....+         ..|.++|+.+++.  +..+.....
T Consensus       148 gtIrIWDl~tg-~~~~~i~~-----~~~V~SlswspdG~lLat~s~D---------~~IrIwD~Rsg~~--i~tl~gH~g  210 (568)
T PTZ00420        148 SFVNIWDIENE-KRAFQINM-----PKKLSSLKWNIKGNLLSGTCVG---------KHMHIIDPRKQEI--ASSFHIHDG  210 (568)
T ss_pred             CeEEEEECCCC-cEEEEEec-----CCcEEEEEECCCCCEEEEEecC---------CEEEEEECCCCcE--EEEEecccC
Confidence            88999999876 22233332     2345678899999988765543         4688899988762  223322111


Q ss_pred             cc-c----ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEe
Q 006979          245 FY-A----FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD  319 (623)
Q Consensus       245 ~~-~----~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~  319 (623)
                      .. .    .-.||+|+++|+-...+..    ...+|.++|+...+.  ..... ..+..  ...-.|.|.++..++|++-
T Consensus       211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~----~~R~VkLWDlr~~~~--pl~~~-~ld~~--~~~L~p~~D~~tg~l~lsG  281 (568)
T PTZ00420        211 GKNTKNIWIDGLGGDDNYILSTGFSKN----NMREMKLWDLKNTTS--ALVTM-SIDNA--SAPLIPHYDESTGLIYLIG  281 (568)
T ss_pred             CceeEEEEeeeEcCCCCEEEEEEcCCC----CccEEEEEECCCCCC--ceEEE-EecCC--ccceEEeeeCCCCCEEEEE
Confidence            11 1    1235799998887765542    234688889875321  11111 11100  2223467776644444444


Q ss_pred             CCCCeeeEEEEecCCCeEEEEe
Q 006979          320 RKNGFWNLHKWIESNNEVLAIY  341 (623)
Q Consensus       320 ~~~g~~~L~~~d~~~~~~~~l~  341 (623)
                      .  |...|+.++...+....|.
T Consensus       282 k--GD~tIr~~e~~~~~~~~l~  301 (568)
T PTZ00420        282 K--GDGNCRYYQHSLGSIRKVN  301 (568)
T ss_pred             E--CCCeEEEEEccCCcEEeec
Confidence            3  3334555555555555554

>COG0627 Predicted esterase [General function prediction only]

Probab=97.58  E-value=0.00021  Score=72.35  Aligned_cols=120  Identities=23%  Similarity=0.293  Sum_probs=71.9

Q ss_pred             CCCCCEEEEecCCCCCc-ccCcCCHHhHHHHcCceEEEEECCC--CC----------CCCchhHHHhhccCCc--cchHH
Q 006979          492 EEKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYG--GS----------TGYGREFRERLLGRWG--IVDVN  556 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~-~~~~~~~~~~~~a~~G~~v~~~d~r--Gs----------~~~g~~~~~~~~~~~g--~~~~~  556 (623)
                      +.+.|++++.||-.... ....+...-....+.|++++.+|-.  +.          |+...-|.+.....|.  ....+
T Consensus        51 ~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~  130 (316)
T COG0627          51 GRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWE  130 (316)
T ss_pred             CCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchh
Confidence            57788888888863221 1112233444456678888887322  10          0101112222222121  23345


Q ss_pred             HHHH--HHHHHHhCCCCCCC--ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          557 DCCS--CATFLVGSGKADEK--RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       557 D~~~--~~~~l~~~~~~d~~--rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      +++.  .-..+.+...++.+  +.+|.|+||||+-++.++ .||++|+.+.+++|+.+..
T Consensus       131 tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s  190 (316)
T COG0627         131 TFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPS  190 (316)
T ss_pred             HHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccc
Confidence            5442  22234445555553  899999999999999999 8899999999999998876

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=97.58  E-value=0.015  Score=55.96  Aligned_cols=226  Identities=10%  Similarity=0.027  Sum_probs=128.9

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .|.|.....+.|=.+|..+|  +.++..-+.   ..+-......|||..+++  +..        ..|.++|.++.+   
T Consensus        74 ~VWft~qg~gaiGhLdP~tG--ev~~ypLg~---Ga~Phgiv~gpdg~~Wit--d~~--------~aI~R~dpkt~e---  135 (353)
T COG4257          74 AVWFTAQGTGAIGHLDPATG--EVETYPLGS---GASPHGIVVGPDGSAWIT--DTG--------LAIGRLDPKTLE---  135 (353)
T ss_pred             ceEEecCccccceecCCCCC--ceEEEecCC---CCCCceEEECCCCCeeEe--cCc--------ceeEEecCcccc---
Confidence            58888777777889999998  555544431   122223567899986654  211        468999988876   


Q ss_pred             ceec--c--cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC
Q 006979          236 PKVL--V--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (623)
Q Consensus       236 ~~~l--~--~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D  311 (623)
                      ++..  .  .......++.|.|+|. |.|+....-     ..   .+|...+    ..+++.... .  .....+.-.||
T Consensus       136 vt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~-----yG---rLdPa~~----~i~vfpaPq-G--~gpyGi~atpd  199 (353)
T COG4257         136 VTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGA-----YG---RLDPARN----VISVFPAPQ-G--GGPYGICATPD  199 (353)
T ss_pred             eEEeecccccCCCcccceeeCCCcc-EEEeecccc-----ce---ecCcccC----ceeeeccCC-C--CCCcceEECCC
Confidence            4433  2  2334566788999997 777764321     11   2222222    222222211 1  34567888999


Q ss_pred             CcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccc--ccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC
Q 006979          312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA--EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (623)
Q Consensus       312 G~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~--~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~  389 (623)
                      |+++|.+-.  + ..|.++|+.++..+++...+.  .-..-.|+.            .-+++.++  .-+...|+++|+.
T Consensus       200 Gsvwyasla--g-naiaridp~~~~aev~p~P~~~~~gsRriwsd------------pig~~wit--twg~g~l~rfdPs  262 (353)
T COG4257         200 GSVWYASLA--G-NAIARIDPFAGHAEVVPQPNALKAGSRRIWSD------------PIGRAWIT--TWGTGSLHRFDPS  262 (353)
T ss_pred             CcEEEEecc--c-cceEEcccccCCcceecCCCcccccccccccC------------ccCcEEEe--ccCCceeeEeCcc
Confidence            998887654  2 258889988886666653222  112234542            12334433  3566789999999


Q ss_pred             CCceeecccCCc--ceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          390 GHSLSLLDIPFT--DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       390 ~~~~~~lt~~~~--~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ...+.....+..  .-.++ ..+.+++.+.-.+   ...|.++|..+.+
T Consensus       263 ~~sW~eypLPgs~arpys~rVD~~grVW~sea~---agai~rfdpeta~  308 (353)
T COG4257         263 VTSWIEYPLPGSKARPYSMRVDRHGRVWLSEAD---AGAIGRFDPETAR  308 (353)
T ss_pred             cccceeeeCCCCCCCcceeeeccCCcEEeeccc---cCceeecCcccce
Confidence            888875544422  22223 3344555543222   2356666655554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.57  E-value=0.017  Score=54.66  Aligned_cols=226  Identities=12%  Similarity=0.028  Sum_probs=117.6

Q ss_pred             CCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccC
Q 006979          163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG  242 (623)
Q Consensus       163 ~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~  242 (623)
                      ..+.|.++|+.++  .+.++..- +.....+....|.-||++.+-..+|         ..+-+.|+..-.   .+++...
T Consensus        59 ~~qhvRlyD~~S~--np~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseD---------gt~kIWdlR~~~---~qR~~~~  123 (311)
T KOG0315|consen   59 GNQHVRLYDLNSN--NPNPVATF-EGHTKNVTAVGFQCDGRWMYTGSED---------GTVKIWDLRSLS---CQRNYQH  123 (311)
T ss_pred             cCCeeEEEEccCC--CCCceeEE-eccCCceEEEEEeecCeEEEecCCC---------ceEEEEeccCcc---cchhccC
Confidence            4566889999887  44333221 1222445667788899876554443         446666776643   4444433


Q ss_pred             CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (623)
Q Consensus       243 ~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~  322 (623)
                      ..-++.....|+...|..-  +.+      ..|++.|+...-.  ...++++.+    ..+....-.|||+.+...+. .
T Consensus       124 ~spVn~vvlhpnQteLis~--dqs------g~irvWDl~~~~c--~~~liPe~~----~~i~sl~v~~dgsml~a~nn-k  188 (311)
T KOG0315|consen  124 NSPVNTVVLHPNQTELISG--DQS------GNIRVWDLGENSC--THELIPEDD----TSIQSLTVMPDGSMLAAANN-K  188 (311)
T ss_pred             CCCcceEEecCCcceEEee--cCC------CcEEEEEccCCcc--ccccCCCCC----cceeeEEEcCCCcEEEEecC-C
Confidence            3445556788887777533  332      3489999876622  344555544    67888899999994444444 4


Q ss_pred             CeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEE-eecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC
Q 006979          323 GFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEII-QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF  400 (623)
Q Consensus       323 g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l-~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~  400 (623)
                      |...+|  ++-++. ..++.+-.. +.      -...+.+- -.|||+++|+-.+ .+....|+..+---+...+|+.++
T Consensus       189 G~cyvW--~l~~~~~~s~l~P~~k-~~------ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~~~kle~~l~gh~  258 (311)
T KOG0315|consen  189 GNCYVW--RLLNHQTASELEPVHK-FQ------AHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDDFFKLELVLTGHQ  258 (311)
T ss_pred             ccEEEE--EccCCCccccceEhhh-ee------cccceEEEEEECCCCcEEEeec-CCceEEEEecCCceeeEEEeecCC
Confidence            654444  333322 222222100 00      00111100 0245777665444 455556665543212334566655


Q ss_pred             cceEee-eecCCEEEEEEecCCCCCeEEEE
Q 006979          401 TDIDNI-TLGNDCLFVEGASGVEPSSVAKV  429 (623)
Q Consensus       401 ~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~  429 (623)
                      .++..- .+.+++.++++++. ...++|-+
T Consensus       259 rWvWdc~FS~dg~YlvTassd-~~~rlW~~  287 (311)
T KOG0315|consen  259 RWVWDCAFSADGEYLVTASSD-HTARLWDL  287 (311)
T ss_pred             ceEEeeeeccCccEEEecCCC-Cceeeccc
Confidence            454433 33344455555544 33455543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.044  Score=53.69  Aligned_cols=296  Identities=17%  Similarity=0.174  Sum_probs=140.0

Q ss_pred             CcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecC-CceEEEeC
Q 006979           77 SPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYG-GGAFRIFG  154 (623)
Q Consensus        77 s~~t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g-~~~~~~s~  154 (623)
                      -|+.+..+-+-+..+..+.++. |..+.-..    +++...||..+.-.-.+-       ...|+.+ +|+ .....+++
T Consensus        75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~----~Dr~Ir~w~~~DF~~~eH-------r~~R~nv-e~dhpT~V~Fap  142 (420)
T KOG2096|consen   75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATIS----GDRSIRLWDVRDFENKEH-------RCIRQNV-EYDHPTRVVFAP  142 (420)
T ss_pred             cchhhhhhhccCCceeeeEEcCCCceeEEEe----CCceEEEEecchhhhhhh-------hHhhccc-cCCCceEEEECC
Confidence            3566777777777888999976 55554443    235556665543210011       1122222 232 22334455


Q ss_pred             C--EEEEEeCCCCcEEEEeCCCC--CCCceecCCCC-----CCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          155 D--TVIFSNYKDQRLYKHSIDSK--DSSPLPITPDY-----GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       155 d--~l~f~~~~~~~l~~~d~~~g--~~~~~~Lt~~~-----~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      |  .+++.-...+.|+++.+...  +..+-..+...     ..-.....+.-..-.+++|.-..++         +.|++
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d---------t~i~l  213 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD---------TKICL  213 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC---------CcEEE
Confidence            5  45555444555777765321  01111111110     0000001122233344444433332         56889


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee-eE--EEcCCCCCcccc
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RV--CVAGFDPTIVES  302 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~-~~--~~~~~~~~~~~~  302 (623)
                      +++.+..   +..+....-.....+.|||||.|+..... |     ...+|-.-....|+..+ .+  .+.|..    ..
T Consensus       214 w~lkGq~---L~~idtnq~~n~~aavSP~GRFia~~gFT-p-----DVkVwE~~f~kdG~fqev~rvf~LkGH~----sa  280 (420)
T KOG2096|consen  214 WDLKGQL---LQSIDTNQSSNYDAAVSPDGRFIAVSGFT-P-----DVKVWEPIFTKDGTFQEVKRVFSLKGHQ----SA  280 (420)
T ss_pred             EecCCce---eeeeccccccccceeeCCCCcEEEEecCC-C-----CceEEEEEeccCcchhhhhhhheeccch----hh
Confidence            9998544   34443333233456899999999866532 2     23345444444443221 22  234443    56


Q ss_pred             CcCceeCCCCc-EEEEEeCCCCeeeEEEEecC---CCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979          303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES---NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (623)
Q Consensus       303 ~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~---~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~  378 (623)
                      +...+|+++.+ ++-++.  +|.|+||-.|..   +...+.|..+    ..|.-..+.... -|..+|.++.|.++.   
T Consensus       281 V~~~aFsn~S~r~vtvSk--DG~wriwdtdVrY~~~qDpk~Lk~g----~~pl~aag~~p~-RL~lsP~g~~lA~s~---  350 (420)
T KOG2096|consen  281 VLAAAFSNSSTRAVTVSK--DGKWRIWDTDVRYEAGQDPKILKEG----SAPLHAAGSEPV-RLELSPSGDSLAVSF---  350 (420)
T ss_pred             eeeeeeCCCcceeEEEec--CCcEEEeeccceEecCCCchHhhcC----CcchhhcCCCce-EEEeCCCCcEEEeec---
Confidence            77889999998 554444  599999955532   1112222111    011111111111 233456777776654   


Q ss_pred             CeEEEEEEeCCCCcee-ecccC-CcceEee--eecCCEEEEEE
Q 006979          379 GRSYLGILDDFGHSLS-LLDIP-FTDIDNI--TLGNDCLFVEG  417 (623)
Q Consensus       379 g~~~L~~~d~~~~~~~-~lt~~-~~~v~~~--~~~~~~~~~~~  417 (623)
                       .+.|-++..++|+.. .+..- .+.+..+  +++|.+++-.+
T Consensus       351 -gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  351 -GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             -CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence             234555555555432 22221 2335444  55566554443

>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]

Probab=97.52  E-value=0.00052  Score=60.28  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=71.0

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhh-ccCCccchH-HHHHHHHHHHHhCC
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL-LGRWGIVDV-NDCCSCATFLVGSG  569 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~-~~~~g~~~~-~D~~~~~~~l~~~~  569 (623)
                      +..+-+||+.||...+..++.+...+..|+.+|+.|+.+|++-.    ..-+..- ....+.... ...+.++..|.+. 
T Consensus        11 g~~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYm----a~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~-   85 (213)
T COG3571          11 GPAPVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYM----AARRTGRRKPPPGSGTLNPEYIVAIAQLRAG-   85 (213)
T ss_pred             CCCCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchh----hhccccCCCCcCccccCCHHHHHHHHHHHhc-
Confidence            34456799999997777777777889999999999999997621    1000000 000111112 3345556666666 


Q ss_pred             CCCCCceEEEEcChHHHHHHHHh-c-CCCceeEEEec-ccC
Q 006979          570 KADEKRLCITGGSAGGYTTLAAL-A-FRDTFKAGASL-YGV  607 (623)
Q Consensus       570 ~~d~~rv~i~G~S~GG~~~~~~~-~-~~~~f~a~v~~-~g~  607 (623)
                       .+...+.|-|+||||-++.+++ . +.+ +.+.+|+ ||+
T Consensus        86 -l~~gpLi~GGkSmGGR~aSmvade~~A~-i~~L~clgYPf  124 (213)
T COG3571          86 -LAEGPLIIGGKSMGGRVASMVADELQAP-IDGLVCLGYPF  124 (213)
T ss_pred             -ccCCceeeccccccchHHHHHHHhhcCC-cceEEEecCcc
Confidence             3457899999999999999888 3 333 5565554 554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.52  E-value=0.0028  Score=69.88  Aligned_cols=137  Identities=12%  Similarity=0.070  Sum_probs=80.4

Q ss_pred             CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc-ceecccC
Q 006979          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE-PKVLVSG  242 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~-~~~l~~~  242 (623)
                      |-.|-++++++. ...+.+...    ...+....++|+|++|+.++-+         +.+++++++++.... ..-+...
T Consensus       117 D~~vK~~~~~D~-s~~~~lrgh----~apVl~l~~~p~~~fLAvss~d---------G~v~iw~~~~~~~~~tl~~v~k~  182 (933)
T KOG1274|consen  117 DTAVKLLNLDDS-SQEKVLRGH----DAPVLQLSYDPKGNFLAVSSCD---------GKVQIWDLQDGILSKTLTGVDKD  182 (933)
T ss_pred             ceeEEEEecccc-chheeeccc----CCceeeeeEcCCCCEEEEEecC---------ceEEEEEcccchhhhhcccCCcc
Confidence            334667776654 233333322    2345668899999999887664         678999998875310 1112222


Q ss_pred             CC-----cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEE
Q 006979          243 SD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV  317 (623)
Q Consensus       243 ~~-----~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~  317 (623)
                      .+     .+..|+|+|||.++++...++        .+-+++..+...   .-.+.+..-.  ..+....|+|.|+.+..
T Consensus       183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~--------~Vkvy~r~~we~---~f~Lr~~~~s--s~~~~~~wsPnG~YiAA  249 (933)
T KOG1274|consen  183 NEFILSRICTRLAWHPKGGTLAVPPVDN--------TVKVYSRKGWEL---QFKLRDKLSS--SKFSDLQWSPNGKYIAA  249 (933)
T ss_pred             ccccccceeeeeeecCCCCeEEeeccCC--------eEEEEccCCcee---heeecccccc--cceEEEEEcCCCcEEee
Confidence            23     356789999988888876554        377777776521   1122222101  22567899999984444


Q ss_pred             EeCCCCeeeEE
Q 006979          318 TDRKNGFWNLH  328 (623)
Q Consensus       318 ~~~~~g~~~L~  328 (623)
                      +.- +|.--||
T Consensus       250 s~~-~g~I~vW  259 (933)
T KOG1274|consen  250 STL-DGQILVW  259 (933)
T ss_pred             ecc-CCcEEEE
Confidence            443 4543333

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.50  E-value=0.037  Score=53.62  Aligned_cols=199  Identities=11%  Similarity=0.062  Sum_probs=118.9

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~  270 (623)
                      ....+..|++|+++|+-.+.|         ..|.+.|.-+..-  +..++-...++..-++||.|+.+|--..|      
T Consensus        56 ~Ki~~~~ws~Dsr~ivSaSqD---------GklIvWDs~TtnK--~haipl~s~WVMtCA~sPSg~~VAcGGLd------  118 (343)
T KOG0286|consen   56 NKIYAMDWSTDSRRIVSASQD---------GKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSPSGNFVACGGLD------  118 (343)
T ss_pred             cceeeeEecCCcCeEEeeccC---------CeEEEEEcccccc--eeEEecCceeEEEEEECCCCCeEEecCcC------
Confidence            346678899999998776554         5688899876531  45555556677888999999988866544      


Q ss_pred             CceEEEEEEecCC-CceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec-ccccc
Q 006979          271 DKAELWVGYISEN-GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFS  348 (623)
Q Consensus       271 ~~~~L~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~-~~~~~  348 (623)
                      +...||-+..... +.+...+.+.+..    .+++--.|.+|+.|+-.    .|......+|.++++......+ ..++-
T Consensus       119 N~Csiy~ls~~d~~g~~~v~r~l~gHt----gylScC~f~dD~~ilT~----SGD~TCalWDie~g~~~~~f~GH~gDV~  190 (343)
T KOG0286|consen  119 NKCSIYPLSTRDAEGNVRVSRELAGHT----GYLSCCRFLDDNHILTG----SGDMTCALWDIETGQQTQVFHGHTGDVM  190 (343)
T ss_pred             ceeEEEecccccccccceeeeeecCcc----ceeEEEEEcCCCceEec----CCCceEEEEEcccceEEEEecCCcccEE
Confidence            3556665543322 2234566677776    78888899998865532    2444556678888876665532 22222


Q ss_pred             cccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc-eeecccCCcceEee-eecCCEEEEEEecCCCCCeE
Q 006979          349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSV  426 (623)
Q Consensus       349 ~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~l  426 (623)
                      ...            .+|.+...+++..-++...||  |...+. ++.....+.++..+ .-..+.-+.++++ ...-++
T Consensus       191 sls------------l~p~~~ntFvSg~cD~~aklW--D~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD-D~tcRl  255 (343)
T KOG0286|consen  191 SLS------------LSPSDGNTFVSGGCDKSAKLW--DVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD-DATCRL  255 (343)
T ss_pred             EEe------------cCCCCCCeEEecccccceeee--eccCcceeEeecccccccceEEEccCCCeeeecCC-CceeEE
Confidence            221            223334455555556666666  444444 44455556667776 2333334444443 333345


Q ss_pred             EEE
Q 006979          427 AKV  429 (623)
Q Consensus       427 y~~  429 (623)
                      |-+
T Consensus       256 yDl  258 (343)
T KOG0286|consen  256 YDL  258 (343)
T ss_pred             Eee
Confidence            543

>PRK07868 acyl-CoA synthetase; Validated

Probab=97.49  E-value=0.00087  Score=79.77  Aligned_cols=137  Identities=11%  Similarity=-0.032  Sum_probs=79.5

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC---HHhHHHHcCceEEEEECCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGS  535 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~---~~~~~~a~~G~~v~~~d~rGs  535 (623)
                      .+|.++.+...    .+..+-|.|....-..  ...-|.||++||.+.........   ....+|+++||.|+++|+.. 
T Consensus        37 ~tp~~vv~~~~----~~~l~~y~~~~~~~~~--~~~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G~-  109 (994)
T PRK07868         37 PSPFQIVESVP----MYRLRRYFPPDNRPGQ--PPVGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFGS-  109 (994)
T ss_pred             CCCCcEEEEcC----cEEEEEeCCCCccccc--cCCCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCCC-
Confidence            35556666542    2455556665421100  11236688899985544433322   24788999999999999632 


Q ss_pred             CCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC-CCceeEEEecccCCCH
Q 006979          536 TGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF-RDTFKAGASLYGVSIP  610 (623)
Q Consensus       536 ~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~-~~~f~a~v~~~g~~d~  610 (623)
                      .  ++..   ....+.. ..+.++.++++.+.+..   .+++.++|+|+||.+++.++ .+ +++++..|.+....|+
T Consensus       110 ~--~~~~---~~~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~  179 (994)
T PRK07868        110 P--DKVE---GGMERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDT  179 (994)
T ss_pred             C--ChhH---cCccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEeccccc
Confidence            2  1110   0001111 11233455555555443   25899999999999998766 44 5688988876666554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=0.016  Score=56.00  Aligned_cols=111  Identities=22%  Similarity=0.234  Sum_probs=71.1

Q ss_pred             eeecceeeCCCCC-EEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc--cCCCcccceeeCCCCCEEEEEEecCCC
Q 006979          191 VSYADGIFDPRFN-RYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPN  267 (623)
Q Consensus       191 ~~~~d~~~sPdG~-~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~--~~~~~~~~p~wSPDG~~la~~~~~~~~  267 (623)
                      .|--+..++|--. -++|.+...        +..+++|++++..  +..+.  ++..||..-.|||||++||-.+.|...
T Consensus        68 aR~Hgi~~~p~~~ravafARrPG--------tf~~vfD~~~~~~--pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~  137 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPG--------TFAMVFDPNGAQE--PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP  137 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCC--------ceEEEECCCCCcC--cEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence            3445677787554 455555432        6688999988763  34443  455688888999999999877755432


Q ss_pred             CCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979          268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       268 ~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~  320 (623)
                         +..-|-++|...+    ..+ +.+.+ ..-....+..|.+||+++.+.+-
T Consensus       138 ---~rGViGvYd~r~~----fqr-vgE~~-t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         138 ---NRGVIGVYDAREG----FQR-VGEFS-THGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ---CCceEEEEecccc----cce-ecccc-cCCcCcceeEEecCCcEEEEeCC
Confidence               4667888888754    111 11111 11145678999999996666653

>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]

Probab=97.47  E-value=0.00043  Score=67.58  Aligned_cols=99  Identities=17%  Similarity=0.193  Sum_probs=61.7

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHc---CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTS---RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD  572 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~---~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d  572 (623)
                      |.|+++||.+....  .+......+..   + |.++.+|.||.|...    ..      ..........+..+.++-.. 
T Consensus        22 ~~i~~~hg~~~~~~--~~~~~~~~~~~~~~~-~~~~~~d~~g~g~s~----~~------~~~~~~~~~~~~~~~~~~~~-   87 (282)
T COG0596          22 PPLVLLHGFPGSSS--VWRPVFKVLPALAAR-YRVIAPDLRGHGRSD----PA------GYSLSAYADDLAALLDALGL-   87 (282)
T ss_pred             CeEEEeCCCCCchh--hhHHHHHHhhccccc-eEEEEecccCCCCCC----cc------cccHHHHHHHHHHHHHHhCC-
Confidence            58999999964433  22222222222   3 999999999866544    00      01111112223333322112 


Q ss_pred             CCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                       .++.++|||+||.+++.++ .+|+.++++|...+...
T Consensus        88 -~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~  124 (282)
T COG0596          88 -EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPP  124 (282)
T ss_pred             -CceEEEEecccHHHHHHHHHhcchhhheeeEecCCCC
Confidence             3499999999999999998 88999999998886543

>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]

Probab=97.40  E-value=0.00081  Score=67.83  Aligned_cols=113  Identities=17%  Similarity=0.195  Sum_probs=74.0

Q ss_pred             CCCCEEEEecCCCCCcccCcCC-----HHhHHHHcCc-------eEEEEECCCCCC-C-CchhHHHhhc----cCCccch
Q 006979          493 EKPPLLVKSHGGPTSEARGILN-----LSIQYWTSRG-------WAFVDVNYGGST-G-YGREFRERLL----GRWGIVD  554 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~-----~~~~~~a~~G-------~~v~~~d~rGs~-~-~g~~~~~~~~----~~~g~~~  554 (623)
                      .+-.+||++|+-.+.+......     .+.+.+..-|       |-|+++|.-|+. | .|..-....-    .++....
T Consensus        49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t  128 (368)
T COG2021          49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT  128 (368)
T ss_pred             cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence            4456899999874433322211     2344444433       999999998865 2 2222221111    1344567


Q ss_pred             HHHHHHHHHHHHhCCCCCCCceE-EEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          555 VNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~-i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ++|.+.+-+.|++.=-|  +|+. |+|+||||+.++.-+ .+|+++..+|.++.-
T Consensus       129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~  181 (368)
T COG2021         129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATA  181 (368)
T ss_pred             HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheeccc
Confidence            89999998888775334  5665 999999999999777 999988888877664

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=97.39  E-value=0.0014  Score=69.08  Aligned_cols=106  Identities=17%  Similarity=0.172  Sum_probs=63.6

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      ..|-+.|+.+++.  .-.|....+-+...+|||||+++|-+.-|        ..|.++....+.    ..+..+..+ ..
T Consensus       700 ~Ti~lWDl~~~~~--~~~l~gHtdqIf~~AWSpdGr~~AtVcKD--------g~~rVy~Prs~e----~pv~Eg~gp-vg  764 (1012)
T KOG1445|consen  700 STIELWDLANAKL--YSRLVGHTDQIFGIAWSPDGRRIATVCKD--------GTLRVYEPRSRE----QPVYEGKGP-VG  764 (1012)
T ss_pred             ceeeeeehhhhhh--hheeccCcCceeEEEECCCCcceeeeecC--------ceEEEeCCCCCC----CccccCCCC-cc
Confidence            5577779888762  22344445556678999999999988744        348888766552    223333221 00


Q ss_pred             ccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe
Q 006979          301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (623)
Q Consensus       301 ~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~  341 (623)
                      ..-.++.|.-||+ ++++.-.+....+|-.||.++-..+.|.
T Consensus       765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~  806 (1012)
T KOG1445|consen  765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLY  806 (1012)
T ss_pred             CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcce
Confidence            3345788999999 4444433344556777776554434443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.37  E-value=0.085  Score=52.65  Aligned_cols=112  Identities=13%  Similarity=0.151  Sum_probs=66.3

Q ss_pred             ceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          148 GAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       148 ~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      .+..+.+|  .++=....+..|.++|++++  .-.+|...   ....+.-..|||||.++++.+-|..       ..||-
T Consensus       199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg--~~~pL~~~---glgg~slLkwSPdgd~lfaAt~dav-------frlw~  266 (445)
T KOG2139|consen  199 TSMQWNEDGTILVTASFGSSSIMIWDPDTG--QKIPLIPK---GLGGFSLLKWSPDGDVLFAATCDAV-------FRLWQ  266 (445)
T ss_pred             eEEEEcCCCCEEeecccCcceEEEEcCCCC--Cccccccc---CCCceeeEEEcCCCCEEEEecccce-------eeeeh
Confidence            34455555  33333445667999999987  55555532   0234556889999999988776531       33441


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE  282 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~  282 (623)
                        .. ..+...+.+.. .+.+....|||+|+.|.|...-++       .||.+..++
T Consensus       267 --e~-q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp-------~lysl~f~~  312 (445)
T KOG2139|consen  267 --EN-QSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSP-------RLYSLTFDG  312 (445)
T ss_pred             --hc-ccceecceecc-CCceeeeeecCCCCEEEEEEcCCc-------eEEEEeecC
Confidence              11 11111233322 225666789999999999985543       366665554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.35  E-value=0.1  Score=54.86  Aligned_cols=133  Identities=13%  Similarity=0.113  Sum_probs=71.5

Q ss_pred             CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~  243 (623)
                      .++|.++|..+| ...+-... .+.+...+.-++||-|+++++....+          .|-+++..+=..-..+.|-  .
T Consensus       281 ~~~l~IWDI~tG-~lkrsF~~-~~~~~~~WP~frWS~DdKy~Arm~~~----------sisIyEtpsf~lld~Kslk--i  346 (698)
T KOG2314|consen  281 GQQLIIWDIATG-LLKRSFPV-IKSPYLKWPIFRWSHDDKYFARMTGN----------SISIYETPSFMLLDKKSLK--I  346 (698)
T ss_pred             CceEEEEEcccc-chhcceec-cCCCccccceEEeccCCceeEEeccc----------eEEEEecCceeeecccccC--C
Confidence            356999999988 21111111 01112334457899999999887653          3444443221000001110  0


Q ss_pred             CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeC
Q 006979          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR  320 (623)
Q Consensus       244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~  320 (623)
                      +-+.+.+|||-+.-|||-.-...+.   ..++-++.+.....+..+.++.       .+.....|-..|. |.+-.++
T Consensus       347 ~gIr~FswsP~~~llAYwtpe~~~~---parvtL~evPs~~~iRt~nlfn-------VsDckLhWQk~gdyLcvkvdR  414 (698)
T KOG2314|consen  347 SGIRDFSWSPTSNLLAYWTPETNNI---PARVTLMEVPSKREIRTKNLFN-------VSDCKLHWQKSGDYLCVKVDR  414 (698)
T ss_pred             ccccCcccCCCcceEEEEcccccCC---cceEEEEecCccceeeecccee-------eeccEEEeccCCcEEEEEEEe
Confidence            1123457999999999987443332   3456666666553322222222       3335778999998 5555554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.29  E-value=0.26  Score=57.57  Aligned_cols=141  Identities=5%  Similarity=-0.000  Sum_probs=81.2

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~  234 (623)
                      ..+++...++.|.++|+.++ .....+...    ........|+| +++.|+....+         ..+.++|+.++.. 
T Consensus       546 ~~las~~~Dg~v~lWd~~~~-~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~~-  610 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARS-QLVTEMKEH----EKRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGVS-  610 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCC-eEEEEecCC----CCCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCcE-
Confidence            45666667888999999865 222333322    23466788997 67766554433         5688889887652 


Q ss_pred             cceecccCCCcccceee-CCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          235 EPKVLVSGSDFYAFPRM-DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       235 ~~~~l~~~~~~~~~p~w-SPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                       ...+.. ........| +++|+.|+....+        ..|+++|+.....  ....+.+..    ..+....|. |+.
T Consensus       611 -~~~~~~-~~~v~~v~~~~~~g~~latgs~d--------g~I~iwD~~~~~~--~~~~~~~h~----~~V~~v~f~-~~~  673 (793)
T PLN00181        611 -IGTIKT-KANICCVQFPSESGRSLAFGSAD--------HKVYYYDLRNPKL--PLCTMIGHS----KTVSYVRFV-DSS  673 (793)
T ss_pred             -EEEEec-CCCeEEEEEeCCCCCEEEEEeCC--------CeEEEEECCCCCc--cceEecCCC----CCEEEEEEe-CCC
Confidence             223322 223334567 5679988876533        3488889875421  122333433    355677886 566


Q ss_pred             EEEEEeCCCCeeeEEE
Q 006979          314 LFFVTDRKNGFWNLHK  329 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~  329 (623)
                      .++.... ++.-+||-
T Consensus       674 ~lvs~s~-D~~ikiWd  688 (793)
T PLN00181        674 TLVSSST-DNTLKLWD  688 (793)
T ss_pred             EEEEEEC-CCEEEEEe
Confidence            4444443 45555553

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=97.26  E-value=0.018  Score=64.72  Aligned_cols=115  Identities=13%  Similarity=0.118  Sum_probs=68.6

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceec-CCCCCCCCeeecceeeCCCCCEEEE-EEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVT-VREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~L-t~~~~~~~~~~~d~~~sPdG~~l~~-v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      +|+|+....++|.++|.++.  .++.+ ...    ......|.|||||++|+| +.-..-.    ....||+.+|++...
T Consensus       320 kiAfv~~~~~~L~~~D~dG~--n~~~ve~~~----~~~i~sP~~SPDG~~vAY~ts~e~~~----g~s~vYv~~L~t~~~  389 (912)
T TIGR02171       320 KLAFRNDVTGNLAYIDYTKG--ASRAVEIED----TISVYHPDISPDGKKVAFCTGIEGLP----GKSSVYVRNLNASGS  389 (912)
T ss_pred             eEEEEEcCCCeEEEEecCCC--CceEEEecC----CCceecCcCCCCCCEEEEEEeecCCC----CCceEEEEehhccCC
Confidence            68998876668999999876  66666 443    334557899999999999 6443300    125699999987431


Q ss_pred             ccceecccCCCcccceee--CCCCCE-EEEEEecCCC---CCCCceEEEEEEecCC
Q 006979          234 QEPKVLVSGSDFYAFPRM--DPRGER-MAWIEWHHPN---MPWDKAELWVGYISEN  283 (623)
Q Consensus       234 ~~~~~l~~~~~~~~~p~w--SPDG~~-la~~~~~~~~---~p~~~~~L~v~d~~~~  283 (623)
                      . +..|.-  +..+-|+|  .+.|.+ |+|++.-..+   -.|....-|.+....|
T Consensus       390 ~-~vkl~v--e~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~g  442 (912)
T TIGR02171       390 G-LVKLPV--ENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANG  442 (912)
T ss_pred             C-ceEeec--ccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCC
Confidence            1 222321  22344665  566655 5666521111   1233334566666543

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.25  E-value=0.00063  Score=45.73  Aligned_cols=38  Identities=16%  Similarity=0.247  Sum_probs=24.8

Q ss_pred             eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEE
Q 006979          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV  277 (623)
Q Consensus       237 ~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v  277 (623)
                      ++++........|.|||||++|+|++....   ....+||+
T Consensus         2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~---~g~~diy~   39 (39)
T PF07676_consen    2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRND---RGSFDIYV   39 (39)
T ss_dssp             EEES-SSSSEEEEEE-TTSSEEEEEEECT-----SSEEEEE
T ss_pred             cCcccCCccccCEEEecCCCEEEEEecCCC---CCCcCEEC
Confidence            456666666778999999999999985441   12455664

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.22  E-value=0.37  Score=52.06  Aligned_cols=168  Identities=13%  Similarity=0.161  Sum_probs=94.1

Q ss_pred             ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEE
Q 006979          240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT  318 (623)
Q Consensus       240 ~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~  318 (623)
                      +.+.++...-+.||||.+|++-.-.       ...||....+..  +.... +.... ..........++-|+. +++++
T Consensus       379 ~k~~~nIs~~aiSPdg~~Ia~st~~-------~~~iy~L~~~~~--vk~~~-v~~~~-~~~~~a~~i~ftid~~k~~~~s  447 (691)
T KOG2048|consen  379 TKEKENISCAAISPDGNLIAISTVS-------RTKIYRLQPDPN--VKVIN-VDDVP-LALLDASAISFTIDKNKLFLVS  447 (691)
T ss_pred             cCCccceeeeccCCCCCEEEEeecc-------ceEEEEeccCcc--eeEEE-eccch-hhhccceeeEEEecCceEEEEe
Confidence            4556666767899999999987633       344666655442  12222 22111 1113456778888888 55555


Q ss_pred             eCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeeccc
Q 006979          319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI  398 (623)
Q Consensus       319 ~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~  398 (623)
                      .   ....|..+++++...+.+......    .-.+....+..   +++|+++...+   +...|+.+++++++.+.|..
T Consensus       448 ~---~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~---SsdG~yiaa~~---t~g~I~v~nl~~~~~~~l~~  514 (691)
T KOG2048|consen  448 K---NIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVV---SSDGNYIAAIS---TRGQIFVYNLETLESHLLKV  514 (691)
T ss_pred             c---ccceeEEEEecCcchhhhhccccc----cCCCcceeEEE---cCCCCEEEEEe---ccceEEEEEcccceeecchh
Confidence            2   234455566656554444322111    11122233333   34899888776   56679999999988876652


Q ss_pred             -CCcceEee--e-ecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          399 -PFTDIDNI--T-LGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       399 -~~~~v~~~--~-~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                       ..-.+...  . .+.+++++..++    .++|.++++..+
T Consensus       515 rln~~vTa~~~~~~~~~~lvvats~----nQv~efdi~~~~  551 (691)
T KOG2048|consen  515 RLNIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIEARN  551 (691)
T ss_pred             ccCcceeeeeccccccCcEEEEecC----CeEEEEecchhh
Confidence             22233322  3 445556555443    578999885444

>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT)

Probab=97.22  E-value=0.0016  Score=63.15  Aligned_cols=100  Identities=17%  Similarity=0.220  Sum_probs=59.2

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHH--------HcCceEEEEECCCCCCC--CchhHHHhhccCCccchHHHHHHHHHHH
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYW--------TSRGWAFVDVNYGGSTG--YGREFRERLLGRWGIVDVNDCCSCATFL  565 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~--------a~~G~~v~~~d~rGs~~--~g~~~~~~~~~~~g~~~~~D~~~~~~~l  565 (623)
                      .-|||+||..++  ...+......+        ....+.++.+||.....  +|...         ....+-+..+++++
T Consensus         5 ~pVlFIhG~~Gs--~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~l---------~~q~~~~~~~i~~i   73 (225)
T PF07819_consen    5 IPVLFIHGNAGS--YKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRTL---------QRQAEFLAEAIKYI   73 (225)
T ss_pred             CEEEEECcCCCC--HhHHHHHHHHHhhhhhhccCccceeEEEeccCccccccccccH---------HHHHHHHHHHHHHH
Confidence            358889996333  22222222222        23458889999875221  12211         11234455666666


Q ss_pred             HhCC---CCCCCceEEEEcChHHHHHHHHhcC----CCceeEEEeccc
Q 006979          566 VGSG---KADEKRLCITGGSAGGYTTLAALAF----RDTFKAGASLYG  606 (623)
Q Consensus       566 ~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~----~~~f~a~v~~~g  606 (623)
                      .+..   ...+++|.++||||||.++-.++..    ++.++.+|...-
T Consensus        74 ~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~t  121 (225)
T PF07819_consen   74 LELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGT  121 (225)
T ss_pred             HHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcC
Confidence            5542   4567899999999999999888733    346777776643

This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.20  E-value=0.0037  Score=61.92  Aligned_cols=113  Identities=16%  Similarity=0.147  Sum_probs=70.9

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMP  269 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p  269 (623)
                      .-+....|.+||..++-..-..        ..|.+.|++++.   ..+|. .+..-.....|||||.+|+-.+-|.    
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gs--------ssi~iWdpdtg~---~~pL~~~glgg~slLkwSPdgd~lfaAt~da----  260 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGS--------SSIMIWDPDTGQ---KIPLIPKGLGGFSLLKWSPDGDVLFAATCDA----  260 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCc--------ceEEEEcCCCCC---cccccccCCCceeeEEEcCCCCEEEEecccc----
Confidence            4456788999998776554332        678888999887   45554 4444455689999999887665442    


Q ss_pred             CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEec
Q 006979          270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE  332 (623)
Q Consensus       270 ~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~  332 (623)
                        ..+||-..- .-.  .+++.+ +.     +++....|+|+|+ |+|...   |...||.+.-
T Consensus       261 --vfrlw~e~q-~wt--~erw~l-gs-----grvqtacWspcGsfLLf~~s---gsp~lysl~f  310 (445)
T KOG2139|consen  261 --VFRLWQENQ-SWT--KERWIL-GS-----GRVQTACWSPCGSFLLFACS---GSPRLYSLTF  310 (445)
T ss_pred             --eeeeehhcc-cce--ecceec-cC-----CceeeeeecCCCCEEEEEEc---CCceEEEEee
Confidence              334442110 110  123332 22     4678899999999 666653   4556776543

>PTZ00472 serine carboxypeptidase (CBP1); Provisional

Probab=97.20  E-value=0.0019  Score=69.65  Aligned_cols=129  Identities=16%  Similarity=0.224  Sum_probs=80.2

Q ss_pred             CeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc----------------CCHHhHHHHcCceEEEEEC-CCC
Q 006979          472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI----------------LNLSIQYWTSRGWAFVDVN-YGG  534 (623)
Q Consensus       472 g~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~----------------~~~~~~~~a~~G~~v~~~d-~rG  534 (623)
                      +..+..|++...+.      .+..|+||+++|||+......                +.....-|.+.+ .++.+| .+|
T Consensus        60 ~~~lFyw~~~s~~~------~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~-~~l~iDqP~G  132 (462)
T PTZ00472         60 DKHYFYWAFGPRNG------NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEA-YVIYVDQPAG  132 (462)
T ss_pred             CceEEEEEEEcCCC------CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccccc-CeEEEeCCCC
Confidence            56788888877652      456799999999997543221                111233466664 555566 556


Q ss_pred             CCCCchhHHHhhccCCc---cchHHHHHHHHHHHH-hCCCCCCCceEEEEcChHHHHHHHHh-c---CC-------Ccee
Q 006979          535 STGYGREFRERLLGRWG---IVDVNDCCSCATFLV-GSGKADEKRLCITGGSAGGYTTLAAL-A---FR-------DTFK  599 (623)
Q Consensus       535 s~~~g~~~~~~~~~~~g---~~~~~D~~~~~~~l~-~~~~~d~~rv~i~G~S~GG~~~~~~~-~---~~-------~~f~  599 (623)
                      .| +...  +.  ..+.   ....+|+...++... +.+.....++.|+|+||||..+-.++ .   +.       =-++
T Consensus       133 ~G-~S~~--~~--~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLk  207 (462)
T PTZ00472        133 VG-FSYA--DK--ADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLA  207 (462)
T ss_pred             cC-cccC--CC--CCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeE
Confidence            43 3221  11  1111   223577777777544 34445568999999999999886665 2   11       1378


Q ss_pred             EEEecccCCCHHH
Q 006979          600 AGASLYGVSIPVI  612 (623)
Q Consensus       600 a~v~~~g~~d~~~  612 (623)
                      +++...|.+|...
T Consensus       208 Gi~IGNg~~dp~~  220 (462)
T PTZ00472        208 GLAVGNGLTDPYT  220 (462)
T ss_pred             EEEEeccccChhh
Confidence            9999999888753

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.18  E-value=0.0044  Score=60.64  Aligned_cols=142  Identities=11%  Similarity=0.132  Sum_probs=84.6

Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEE
Q 006979          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL  275 (623)
Q Consensus       196 ~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L  275 (623)
                      -.+||+|++|+....          .+|.+-|..+=+   +.+|..--+.+....|+.|.-+|......++       .+
T Consensus        14 c~fSp~g~yiAs~~~----------yrlviRd~~tlq---~~qlf~cldki~yieW~ads~~ilC~~yk~~-------~v   73 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSR----------YRLVIRDSETLQ---LHQLFLCLDKIVYIEWKADSCHILCVAYKDP-------KV   73 (447)
T ss_pred             eeECCCCCeeeeeee----------eEEEEeccchhh---HHHHHHHHHHhhheeeeccceeeeeeeeccc-------eE
Confidence            359999999987644          567777776655   4455443445566789999998887765544       26


Q ss_pred             EEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccc
Q 006979          276 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF  354 (623)
Q Consensus       276 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~  354 (623)
                      .+.++...+   -.-.+....    ..+....|||||+ ++..+..   .-+|-++.+.+.+-..+.......       
T Consensus        74 qvwsl~Qpe---w~ckIdeg~----agls~~~WSPdgrhiL~tseF---~lriTVWSL~t~~~~~~~~pK~~~-------  136 (447)
T KOG4497|consen   74 QVWSLVQPE---WYCKIDEGQ----AGLSSISWSPDGRHILLTSEF---DLRITVWSLNTQKGYLLPHPKTNV-------  136 (447)
T ss_pred             EEEEeecce---eEEEeccCC----CcceeeeECCCcceEeeeecc---eeEEEEEEeccceeEEecccccCc-------
Confidence            666765441   111222222    4677899999998 6666554   234444444454433333222122       


Q ss_pred             cCcceeEEeecCCCCEEEEEEEECC
Q 006979          355 GINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       355 ~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                        ..+.|.+   ||+...+.++++-
T Consensus       137 --kg~~f~~---dg~f~ai~sRrDC  156 (447)
T KOG4497|consen  137 --KGYAFHP---DGQFCAILSRRDC  156 (447)
T ss_pred             --eeEEECC---CCceeeeeecccH
Confidence              2344443   7777777776653

>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []

Probab=97.14  E-value=0.0013  Score=62.94  Aligned_cols=88  Identities=16%  Similarity=0.218  Sum_probs=50.7

Q ss_pred             EEEecCCCCCcccCcCCHHhHHHHcCceE---EEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          498 LVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       498 iv~~hGg~~~~~~~~~~~~~~~~a~~G~~---v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      ||++||-. ......|...+++|.++||.   |+.++|.....  ........  ........+.+.|+.+++.  .-. 
T Consensus         4 VVlVHG~~-~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~--~~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa-   75 (219)
T PF01674_consen    4 VVLVHGTG-GNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNG--SPSVQNAH--MSCESAKQLRAFIDAVLAY--TGA-   75 (219)
T ss_dssp             EEEE--TT-TTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCH--HTHHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred             EEEECCCC-cchhhCHHHHHHHHHHcCCCcceeEeccCCCCCC--CCcccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence            56699983 22556788999999999999   79999854322  11111111  1122335566666666543  225 


Q ss_pred             ceEEEEcChHHHHHHHHhc
Q 006979          575 RLCITGGSAGGYTTLAALA  593 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~~  593 (623)
                      ||=|+|||+||.++-+++.
T Consensus        76 kVDIVgHS~G~~iaR~yi~   94 (219)
T PF01674_consen   76 KVDIVGHSMGGTIARYYIK   94 (219)
T ss_dssp             -EEEEEETCHHHHHHHHHH
T ss_pred             EEEEEEcCCcCHHHHHHHH
Confidence            9999999999999988873

This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....

>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3

Probab=97.13  E-value=0.0011  Score=67.99  Aligned_cols=112  Identities=12%  Similarity=0.138  Sum_probs=61.1

Q ss_pred             CCCCCEEEEecCCCCCc-ccCcCCHHhHHH-Hc--CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh
Q 006979          492 EEKPPLLVKSHGGPTSE-ARGILNLSIQYW-TS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG  567 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~-~~~~~~~~~~~~-a~--~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~  567 (623)
                      +...|++|++||..... ...........+ ..  +.+.|+++|+.....  ..|..+....  ...-+.+...++.|.+
T Consensus        68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~--~~Y~~a~~n~--~~vg~~la~~l~~L~~  143 (331)
T PF00151_consen   68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGAS--NNYPQAVANT--RLVGRQLAKFLSFLIN  143 (331)
T ss_dssp             -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHS--S-HHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhcc--ccccchhhhH--HHHHHHHHHHHHHHHh
Confidence            34679999999985554 222233344434 34  589999999763211  1232221110  0112334455667775


Q ss_pred             CCCCCCCceEEEEcChHHHHHHHHh-cCCC--ceeEEEecccC
Q 006979          568 SGKADEKRLCITGGSAGGYTTLAAL-AFRD--TFKAGASLYGV  607 (623)
Q Consensus       568 ~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g~  607 (623)
                      ...+++++|-|+|||+|++++..+. ....  .+..+..+.|.
T Consensus       144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA  186 (331)
T PF00151_consen  144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA  186 (331)
T ss_dssp             HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred             hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence            5458899999999999999999998 4444  56666666554

1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.25  Score=52.12  Aligned_cols=204  Identities=14%  Similarity=0.126  Sum_probs=119.9

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~  273 (623)
                      .....+++|++++....+.        +.+.++|..+.+.  ...+.-+. ......++|||++++......     ...
T Consensus        77 ~~i~v~~~~~~vyv~~~~~--------~~v~vid~~~~~~--~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~-----~~~  140 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDS--------NTVSVIDTATNTV--LGSIPVGL-GPVGLAVDPDGKYVYVANAGN-----GNN  140 (381)
T ss_pred             cceeeCCCCCeEEEecCCC--------CeEEEEcCcccce--eeEeeecc-CCceEEECCCCCEEEEEeccc-----CCc
Confidence            3456888998877665432        6688999766542  12222222 233467999999998775321     145


Q ss_pred             EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc--ccccccc
Q 006979          274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSRPL  351 (623)
Q Consensus       274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~--~~~~~~~  351 (623)
                      .+.++|-.+...  ......+.      .......+|+|+.+|+.+.  +...|..+|.++....+ ....  .....  
T Consensus       141 ~vsvid~~t~~~--~~~~~vG~------~P~~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~-~~~~~~~~~~~--  207 (381)
T COG3391         141 TVSVIDAATNKV--TATIPVGN------TPTGVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVR-GSVGSLVGVGT--  207 (381)
T ss_pred             eEEEEeCCCCeE--EEEEecCC------CcceEEECCCCCeEEEEec--CCCeEEEEeCCCcceec-cccccccccCC--
Confidence            688888776632  11122222      2357889999996666664  45578888877665543 2110  11111  


Q ss_pred             ccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcc---eE-eeeecCCEEEEEEecCCCCCeEE
Q 006979          352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD---ID-NITLGNDCLFVEGASGVEPSSVA  427 (623)
Q Consensus       352 w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~---v~-~~~~~~~~~~~~~~s~~~~~~ly  427 (623)
                         ......+   +++++.+|+....+....+..+|..++.+.....+...   .. .+.++++.+|+....   ...++
T Consensus       208 ---~P~~i~v---~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~  278 (381)
T COG3391         208 ---GPAGIAV---DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVS  278 (381)
T ss_pred             ---CCceEEE---CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEE
Confidence               1111222   23788888877655556888999988877655322111   11 226777777666443   56788


Q ss_pred             EEEcCCCc
Q 006979          428 KVTLDDHK  435 (623)
Q Consensus       428 ~~~l~~~~  435 (623)
                      .++..+..
T Consensus       279 vid~~~~~  286 (381)
T COG3391         279 VIDGATDR  286 (381)
T ss_pred             EEeCCCCc
Confidence            88876655

>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function

Probab=97.08  E-value=0.0036  Score=64.39  Aligned_cols=62  Identities=16%  Similarity=0.073  Sum_probs=50.1

Q ss_pred             cCCccchHHHHHHHHHHHHhCCC--CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          548 GRWGIVDVNDCCSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       548 ~~~g~~~~~D~~~~~~~l~~~~~--~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      .++|.....|++.|+.++.+.-.  -+.-++.+.|+|+|||++.+++ -.|..|.+++-.++.+-
T Consensus       156 QN~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~  220 (403)
T PF11144_consen  156 QNFGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL  220 (403)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence            35777778899999999988622  2234899999999999999999 56999999998877653

>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function

Probab=97.08  E-value=0.0025  Score=63.57  Aligned_cols=112  Identities=15%  Similarity=0.171  Sum_probs=70.9

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHH---cCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHH----HHHHHHHh
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWT---SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCC----SCATFLVG  567 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a---~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~----~~~~~l~~  567 (623)
                      .++||++.|.|+...  .|....+.+.   ...|.|+.+.+.|.......-.  ...+......+|.+    +.++.+..
T Consensus         2 ~~li~~IPGNPGlv~--fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~--~~~~~~~~sL~~QI~hk~~~i~~~~~   77 (266)
T PF10230_consen    2 RPLIVFIPGNPGLVE--FYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSK--FSPNGRLFSLQDQIEHKIDFIKELIP   77 (266)
T ss_pred             cEEEEEECCCCChHH--HHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccc--ccCCCCccCHHHHHHHHHHHHHHHhh
Confidence            478999999986443  3333444444   4589999999998654333200  00122233455544    34444444


Q ss_pred             CCCCCCCceEEEEcChHHHHHHHHh-cCC---CceeEEEecccC-CCH
Q 006979          568 SGKADEKRLCITGGSAGGYTTLAAL-AFR---DTFKAGASLYGV-SIP  610 (623)
Q Consensus       568 ~~~~d~~rv~i~G~S~GG~~~~~~~-~~~---~~f~a~v~~~g~-~d~  610 (623)
                      +..-...++.++|||.|+|+++.++ +++   ..++.++...|. .|+
T Consensus        78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~i  125 (266)
T PF10230_consen   78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDI  125 (266)
T ss_pred             hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccc
Confidence            3221357999999999999999999 667   577888888885 444

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.054  Score=57.58  Aligned_cols=176  Identities=7%  Similarity=0.046  Sum_probs=101.1

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      ..++.++++ ..+.+...+|.+.++|.... ...+.+...   ...|....+|..  ..+.....+         ..|..
T Consensus       220 vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-k~~~~~~~~---h~~rvg~laW~~--~~lssGsr~---------~~I~~  284 (484)
T KOG0305|consen  220 VTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-KKTRTLRGS---HASRVGSLAWNS--SVLSSGSRD---------GKILN  284 (484)
T ss_pred             eEEEEECCCCCEEEEeecCCeEEEEehhhc-cccccccCC---cCceeEEEeccC--ceEEEecCC---------CcEEE
Confidence            556666655 44555557788999998754 233344331   146777888872  223332222         45777


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      .|+...+.. .+.+.....-+.+..|++||+++|=-.        +...+++.|.....   ....+.+..    ..+-.
T Consensus       285 ~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGg--------nDN~~~Iwd~~~~~---p~~~~~~H~----aAVKA  348 (484)
T KOG0305|consen  285 HDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGG--------NDNVVFIWDGLSPE---PKFTFTEHT----AAVKA  348 (484)
T ss_pred             EEEecchhh-hhhhhcccceeeeeEECCCCCeeccCC--------CccceEeccCCCcc---ccEEEeccc----eeeeE
Confidence            777665311 122333334466789999999887332        23457777774442   344445544    45667


Q ss_pred             ceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccc
Q 006979          306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF  354 (623)
Q Consensus       306 ~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~  354 (623)
                      .+|+|=-+ |+..... .....|..+|..+++...-......+....|+.
T Consensus       349 ~awcP~q~~lLAsGGG-s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk  397 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGG-SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK  397 (484)
T ss_pred             eeeCCCccCceEEcCC-CcccEEEEEEcCCCcEecccccCCceeeEEEcC
Confidence            88998544 6655433 344567777777776544444445566666764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.07  E-value=0.11  Score=54.75  Aligned_cols=210  Identities=10%  Similarity=0.026  Sum_probs=109.2

Q ss_pred             eeeCCCCCEEEEEEeccC--CCCCCceeEEEEEEcCCCCcccceeccc---C-CCcccceeeCCCCCEEEEEEecCCCCC
Q 006979          196 GIFDPRFNRYVTVREDRR--QDALNSTTEIVAIALNGQNIQEPKVLVS---G-SDFYAFPRMDPRGERMAWIEWHHPNMP  269 (623)
Q Consensus       196 ~~~sPdG~~l~~v~~~~~--~~~~~~~~~L~~idl~~g~~~~~~~l~~---~-~~~~~~p~wSPDG~~la~~~~~~~~~p  269 (623)
                      ..|||..++|+-..-...  .+.......|.+.|+.+|.   ...-..   + .-.....+||-|+|++|-+..      
T Consensus       255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~---lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~------  325 (698)
T KOG2314|consen  255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL---LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG------  325 (698)
T ss_pred             eecCCccceEEEecCCccccCcccCCCceEEEEEccccc---hhcceeccCCCccccceEEeccCCceeEEecc------
Confidence            448999998876543221  1112234789999999997   322211   1 111223579999999887753      


Q ss_pred             CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCC-eeeEEEEecCCC-eEEEEeecccc
Q 006979          270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG-FWNLHKWIESNN-EVLAIYSLDAE  346 (623)
Q Consensus       270 ~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g-~~~L~~~d~~~~-~~~~l~~~~~~  346 (623)
                         ..|.+++...-      .++.... -....+.++.|+|-+. |+|-+...+. -.++-.+..-++ +.+...-.+..
T Consensus       326 ---~sisIyEtpsf------~lld~Ks-lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVs  395 (698)
T KOG2314|consen  326 ---NSISIYETPSF------MLLDKKS-LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVS  395 (698)
T ss_pred             ---ceEEEEecCce------eeecccc-cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeee
Confidence               23666654322      1122111 1114567899999998 6555443122 123333333232 23322212222


Q ss_pred             cccccccccCcceeEEeecCCCCEEEEEEEECC-------eE--EEEEEeCCCCceeecccCCcceEe-eeecCCEEEEE
Q 006979          347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-------RS--YLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFVE  416 (623)
Q Consensus       347 ~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-------~~--~L~~~d~~~~~~~~lt~~~~~v~~-~~~~~~~~~~~  416 (623)
                      .....|..            .|+.|.+-.++..       .+  .|++++-..--+..+......+.- ..+.|+++.++
T Consensus       396 DckLhWQk------------~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi  463 (698)
T KOG2314|consen  396 DCKLHWQK------------SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVI  463 (698)
T ss_pred             ccEEEecc------------CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEE
Confidence            23346664            6677776665432       22  355554332222333332222221 26788888777


Q ss_pred             Ee-cCCCCCeEEEEEcCCCcc
Q 006979          417 GA-SGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       417 ~~-s~~~~~~ly~~~l~~~~~  436 (623)
                      .. ......+.|.+....+++
T Consensus       464 ~g~~~k~tvsfY~~e~~~~~~  484 (698)
T KOG2314|consen  464 SGNTVKNTVSFYAVETNIKKP  484 (698)
T ss_pred             EccccccceeEEEeecCCCch
Confidence            64 555566788887655554

>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.07  E-value=0.0016  Score=70.07  Aligned_cols=111  Identities=15%  Similarity=0.084  Sum_probs=66.1

Q ss_pred             CCEEEEecCCCCCcccC-cCCHHhHHHH-cCceEEEEECCCCCCCCchhH--HHhhccCC----ccchHHHHHHHHHHHH
Q 006979          495 PPLLVKSHGGPTSEARG-ILNLSIQYWT-SRGWAFVDVNYGGSTGYGREF--RERLLGRW----GIVDVNDCCSCATFLV  566 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~-~~~~~~~~~a-~~G~~v~~~d~rGs~~~g~~~--~~~~~~~~----g~~~~~D~~~~~~~l~  566 (623)
                      -|++|++ ||-+..... ........+| +.|-.++.+.+|-   ||++.  .+....+.    -.+.++|+..-++++.
T Consensus        29 gpifl~~-ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~  104 (434)
T PF05577_consen   29 GPIFLYI-GGEGPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK  104 (434)
T ss_dssp             SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEE-CCCCccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence            6888888 442222111 1112333444 4699999999997   44443  11112222    2355789999999988


Q ss_pred             hCC-CCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          567 GSG-KADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       567 ~~~-~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ++- ..+..++.++|+||||.++.++- .+|++|.++++.++++.
T Consensus       105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~  149 (434)
T PF05577_consen  105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ  149 (434)
T ss_dssp             HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred             HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence            643 34556999999999999999988 89999999998888754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=97.04  E-value=0.068  Score=55.02  Aligned_cols=226  Identities=12%  Similarity=0.035  Sum_probs=123.5

Q ss_pred             CCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       146 g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      +..+.+|+.+ .++.....+|.+..++.+++  ....|...    ........|+-+|++|+-...|         ..+.
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~--l~~tl~~H----kgPI~slKWnk~G~yilS~~vD---------~tti  301 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGN--LISTLGQH----KGPIFSLKWNKKGTYILSGGVD---------GTTI  301 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEEecCch--hhhhhhcc----CCceEEEEEcCCCCEEEeccCC---------ccEE
Confidence            3566777755 56666667888888887754  44444443    2334567899999999875443         4577


Q ss_pred             EEEcCCCCcccceecccCCCcc-cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          225 AIALNGQNIQEPKVLVSGSDFY-AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~~~~-~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      ++|.-+|+   ..+...-.... -...|=-+.+   |+...      ....|+++-++...   +...+.+..    ..+
T Consensus       302 lwd~~~g~---~~q~f~~~s~~~lDVdW~~~~~---F~ts~------td~~i~V~kv~~~~---P~~t~~GH~----g~V  362 (524)
T KOG0273|consen  302 LWDAHTGT---VKQQFEFHSAPALDVDWQSNDE---FATSS------TDGCIHVCKVGEDR---PVKTFIGHH----GEV  362 (524)
T ss_pred             EEeccCce---EEEeeeeccCCccceEEecCce---EeecC------CCceEEEEEecCCC---cceeeeccc----Cce
Confidence            88988887   44433221111 1234544433   23212      23458888887764   344555655    678


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      ....|.|.|+|+..+.. ++.-.||...- ++....+.....++-...|++.... .   ..|..+..+.+..-++...+
T Consensus       363 ~alk~n~tg~LLaS~Sd-D~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v-~---~n~~~~~~l~sas~dstV~l  436 (524)
T KOG0273|consen  363 NALKWNPTGSLLASCSD-DGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPV-T---SNPNMNLMLASASFDSTVKL  436 (524)
T ss_pred             EEEEECCCCceEEEecC-CCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCc-c---CCCcCCceEEEeecCCeEEE
Confidence            89999999986655544 57777875421 1112222222222222234331100 0   00133344444445565555


Q ss_pred             EEEeCCCCc-eeecccCCcceEee--eecCCEE
Q 006979          384 GILDDFGHS-LSLLDIPFTDIDNI--TLGNDCL  413 (623)
Q Consensus       384 ~~~d~~~~~-~~~lt~~~~~v~~~--~~~~~~~  413 (623)
                      |  |...+. +..+......|..+  ++++.++
T Consensus       437 w--dv~~gv~i~~f~kH~~pVysvafS~~g~yl  467 (524)
T KOG0273|consen  437 W--DVESGVPIHTLMKHQEPVYSVAFSPNGRYL  467 (524)
T ss_pred             E--EccCCceeEeeccCCCceEEEEecCCCcEE
Confidence            5  555554 44566666667776  5555544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=97.04  E-value=0.0063  Score=61.33  Aligned_cols=140  Identities=14%  Similarity=0.097  Sum_probs=87.5

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      .+++.-.++.|..+|..++  ..+.-.+.    ..+......+++|..|+....+         ..|-++|+.+.+   +
T Consensus       314 ~~~SgH~DkkvRfwD~Rs~--~~~~sv~~----gg~vtSl~ls~~g~~lLsssRD---------dtl~viDlRt~e---I  375 (459)
T KOG0288|consen  314 DVISGHFDKKVRFWDIRSA--DKTRSVPL----GGRVTSLDLSMDGLELLSSSRD---------DTLKVIDLRTKE---I  375 (459)
T ss_pred             eeeecccccceEEEeccCC--ceeeEeec----CcceeeEeeccCCeEEeeecCC---------Cceeeeeccccc---E
Confidence            3444445666888887765  33333332    4578888999999988776433         458889998877   5


Q ss_pred             eecccCCCc-----ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC
Q 006979          237 KVLVSGSDF-----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (623)
Q Consensus       237 ~~l~~~~~~-----~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D  311 (623)
                      ++......|     .+...|||||+|++--+.|.        .||+.++.++.. +........+    ..+....|+|-
T Consensus       376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg--------sv~iW~v~tgKl-E~~l~~s~s~----~aI~s~~W~~s  442 (459)
T KOG0288|consen  376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG--------SVYIWSVFTGKL-EKVLSLSTSN----AAITSLSWNPS  442 (459)
T ss_pred             EEEeeccccccccccceeEECCCCceeeeccCCC--------cEEEEEccCceE-EEEeccCCCC----cceEEEEEcCC
Confidence            555443322     34467999999988655443        499999987732 1222222222    35678899999


Q ss_pred             CcEEEEEeCCCCeeeEE
Q 006979          312 GELFFVTDRKNGFWNLH  328 (623)
Q Consensus       312 G~l~~~~~~~~g~~~L~  328 (623)
                      |+-+..++. +....||
T Consensus       443 G~~Llsadk-~~~v~lW  458 (459)
T KOG0288|consen  443 GSGLLSADK-QKAVTLW  458 (459)
T ss_pred             CchhhcccC-CcceEec
Confidence            983333444 4444444

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.04  E-value=0.15  Score=53.16  Aligned_cols=149  Identities=10%  Similarity=0.022  Sum_probs=84.3

Q ss_pred             EEEEeCCCCcEEEEeCCCCC---CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          157 VIFSNYKDQRLYKHSIDSKD---SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~---~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      -+++...|-.+..+|+.+-+   ..-++|.+..   ....+..+|||.|..|+++...         .+.-++|.++-+ 
T Consensus       181 R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E---~h~i~sl~ys~Tg~~iLvvsg~---------aqakl~DRdG~~-  247 (641)
T KOG0772|consen  181 RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE---THQINSLQYSVTGDQILVVSGS---------AQAKLLDRDGFE-  247 (641)
T ss_pred             eeeeccccceEEEEecccccccchhhhccCccc---ccccceeeecCCCCeEEEEecC---------cceeEEccCCce-
Confidence            44455556668888887531   1245665541   3456778999999999998753         345666776654 


Q ss_pred             ccceecccCC----------Ccc---cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC-Cc
Q 006979          234 QEPKVLVSGS----------DFY---AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-TI  299 (623)
Q Consensus       234 ~~~~~l~~~~----------~~~---~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~-~~  299 (623)
                        ......|.          +..   ..-+|.|+.+..+....++.       .|.+.+++....  ...++..... ..
T Consensus       248 --~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg-------tlRiWdv~~~k~--q~qVik~k~~~g~  316 (641)
T KOG0772|consen  248 --IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG-------TLRIWDVNNTKS--QLQVIKTKPAGGK  316 (641)
T ss_pred             --eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC-------cEEEEecCCchh--heeEEeeccCCCc
Confidence              22222221          111   22469999998876654432       255556554321  2333322110 11


Q ss_pred             cccCcCceeCCCCcEEEEEeCCCCeeeEEEE
Q 006979          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKW  330 (623)
Q Consensus       300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~  330 (623)
                      ...+..-.|++||+++...-. +|.-++|.+
T Consensus       317 Rv~~tsC~~nrdg~~iAagc~-DGSIQ~W~~  346 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKLIAAGCL-DGSIQIWDK  346 (641)
T ss_pred             ccCceeeecCCCcchhhhccc-CCceeeeec
Confidence            145567789999995433333 577777754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.92  E-value=0.047  Score=61.60  Aligned_cols=106  Identities=19%  Similarity=0.156  Sum_probs=66.6

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~  270 (623)
                      ..+.|..||||+.+++-+.-|         +.+.+++..+.+.  .+++-.....+-+..|.|-||++|-.+.|+.    
T Consensus       130 ~DV~Dv~Wsp~~~~lvS~s~D---------nsViiwn~~tF~~--~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt----  194 (942)
T KOG0973|consen  130 SDVLDVNWSPDDSLLVSVSLD---------NSVIIWNAKTFEL--LKVLRGHQSLVKGVSWDPIGKYFASQSDDRT----  194 (942)
T ss_pred             CccceeccCCCccEEEEeccc---------ceEEEEcccccee--eeeeecccccccceEECCccCeeeeecCCce----
Confidence            346789999999888776554         5678888777542  4555555567778899999999997775442    


Q ss_pred             CceEEEEEEecCCCceeeeEEEcCCCC-CccccCcCceeCCCCcEEEE
Q 006979          271 DKAELWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGELFFV  317 (623)
Q Consensus       271 ~~~~L~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ws~DG~l~~~  317 (623)
                          |-+.+...-+.  ++.+....+. .......++.|||||+++..
T Consensus       195 ----ikvwrt~dw~i--~k~It~pf~~~~~~T~f~RlSWSPDG~~las  236 (942)
T KOG0973|consen  195 ----LKVWRTSDWGI--EKSITKPFEESPLTTFFLRLSWSPDGHHLAS  236 (942)
T ss_pred             ----EEEEEccccee--eEeeccchhhCCCcceeeecccCCCcCeecc
Confidence                44555433221  2222221110 00135678999999984433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=96.91  E-value=0.092  Score=50.20  Aligned_cols=174  Identities=14%  Similarity=0.120  Sum_probs=93.9

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec--ccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l--~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~  270 (623)
                      +-+..|+|...-++++....        ..+.++|...++   ...-  ..+..+  ...|||||+++++...++     
T Consensus        67 vdql~w~~~~~d~~atas~d--------k~ir~wd~r~~k---~~~~i~~~~eni--~i~wsp~g~~~~~~~kdD-----  128 (313)
T KOG1407|consen   67 VDQLCWDPKHPDLFATASGD--------KTIRIWDIRSGK---CTARIETKGENI--NITWSPDGEYIAVGNKDD-----  128 (313)
T ss_pred             hhhheeCCCCCcceEEecCC--------ceEEEEEeccCc---EEEEeeccCcce--EEEEcCCCCEEEEecCcc-----
Confidence            44677887665555554322        457788888776   3332  233333  358999999999885332     


Q ss_pred             CceEEEEEEecCCCceeeeEEEc-CCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccccc
Q 006979          271 DKAELWVGYISENGDVYKRVCVA-GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR  349 (623)
Q Consensus       271 ~~~~L~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~  349 (623)
                         .|-.+|....     +.+.. ...    .......|.-++.++|+.+- .|.-+|..+.    .++++..-......
T Consensus       129 ---~it~id~r~~-----~~~~~~~~~----~e~ne~~w~~~nd~Fflt~G-lG~v~ILsyp----sLkpv~si~AH~sn  191 (313)
T KOG1407|consen  129 ---RITFIDARTY-----KIVNEEQFK----FEVNEISWNNSNDLFFLTNG-LGCVEILSYP----SLKPVQSIKAHPSN  191 (313)
T ss_pred             ---cEEEEEeccc-----ceeehhccc----ceeeeeeecCCCCEEEEecC-CceEEEEecc----ccccccccccCCcc
Confidence               3666676543     11111 111    34567889877778888876 6777887774    33333321111000


Q ss_pred             ccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC-CceeecccCCcceEee--eecCCEE
Q 006979          350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-HSLSLLDIPFTDIDNI--TLGNDCL  413 (623)
Q Consensus       350 ~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~-~~~~~lt~~~~~v~~~--~~~~~~~  413 (623)
                      -      --..|   +|+|+++..-+ .+....||  |++. --++.++.-+|.+..+  +.++..+
T Consensus       192 C------icI~f---~p~GryfA~Gs-ADAlvSLW--D~~ELiC~R~isRldwpVRTlSFS~dg~~l  246 (313)
T KOG1407|consen  192 C------ICIEF---DPDGRYFATGS-ADALVSLW--DVDELICERCISRLDWPVRTLSFSHDGRML  246 (313)
T ss_pred             e------EEEEE---CCCCceEeecc-ccceeecc--ChhHhhhheeeccccCceEEEEeccCccee
Confidence            0      00112   34777766544 33444444  4432 1234566666777766  4444433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.88  E-value=0.18  Score=51.52  Aligned_cols=191  Identities=14%  Similarity=0.126  Sum_probs=105.6

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      .++++..+..|+++..... ..+..+...    ...+......|.|.+++....+         ......|..+|..  .
T Consensus       275 ~v~~aSad~~i~vws~~~~-s~~~~~~~h----~~~V~~ls~h~tgeYllsAs~d---------~~w~Fsd~~~g~~--l  338 (506)
T KOG0289|consen  275 TVITASADEIIRVWSVPLS-SEPTSSRPH----EEPVTGLSLHPTGEYLLSASND---------GTWAFSDISSGSQ--L  338 (506)
T ss_pred             heeecCCcceEEeeccccc-cCccccccc----cccceeeeeccCCcEEEEecCC---------ceEEEEEccCCcE--E
Confidence            3445445556777776543 222222222    2345667889999998886554         3355566666641  2


Q ss_pred             eeccc-CCC-cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-
Q 006979          237 KVLVS-GSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-  313 (623)
Q Consensus       237 ~~l~~-~~~-~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-  313 (623)
                      .++.. ..+ -+....|.|||  |.|....      ..+.|-++|+..+.   +...+.+..    .-+....|+.+|- 
T Consensus       339 t~vs~~~s~v~~ts~~fHpDg--Lifgtgt------~d~~vkiwdlks~~---~~a~Fpght----~~vk~i~FsENGY~  403 (506)
T KOG0289|consen  339 TVVSDETSDVEYTSAAFHPDG--LIFGTGT------PDGVVKIWDLKSQT---NVAKFPGHT----GPVKAISFSENGYW  403 (506)
T ss_pred             EEEeeccccceeEEeeEcCCc--eEEeccC------CCceEEEEEcCCcc---ccccCCCCC----CceeEEEeccCceE
Confidence            22222 122 25567899999  4455422      14568888988773   333455544    5677889999994 


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCe-EEEEe-ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCC
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNE-VLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH  391 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~-~~~l~-~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~  391 (623)
                      |+..+++  +.  +..+|+..-+ .+.+. ++..++         .++.|-+   .|..+...   ...-++|.++..++
T Consensus       404 Lat~add--~~--V~lwDLRKl~n~kt~~l~~~~~v---------~s~~fD~---SGt~L~~~---g~~l~Vy~~~k~~k  464 (506)
T KOG0289|consen  404 LATAADD--GS--VKLWDLRKLKNFKTIQLDEKKEV---------NSLSFDQ---SGTYLGIA---GSDLQVYICKKKTK  464 (506)
T ss_pred             EEEEecC--Ce--EEEEEehhhcccceeeccccccc---------eeEEEcC---CCCeEEee---cceeEEEEEecccc
Confidence            3323332  33  5666765433 22222 221122         2333431   44444443   44567888888888


Q ss_pred             ceeecc
Q 006979          392 SLSLLD  397 (623)
Q Consensus       392 ~~~~lt  397 (623)
                      +|+.+.
T Consensus       465 ~W~~~~  470 (506)
T KOG0289|consen  465 SWTEIK  470 (506)
T ss_pred             cceeee
Confidence            887654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=96.88  E-value=0.36  Score=48.40  Aligned_cols=152  Identities=11%  Similarity=0.112  Sum_probs=96.8

Q ss_pred             eCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979          153 FGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (623)
Q Consensus       153 s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g  231 (623)
                      .++ .++.+...|..-|+++..+| ..+-.|+..    ...+....||-||.+|+-- .        ..+.|.+....+|
T Consensus        73 ~P~~~l~aTGGgDD~AflW~~~~g-e~~~eltgH----KDSVt~~~FshdgtlLATG-d--------msG~v~v~~~stg  138 (399)
T KOG0296|consen   73 HPNNNLVATGGGDDLAFLWDISTG-EFAGELTGH----KDSVTCCSFSHDGTLLATG-D--------MSGKVLVFKVSTG  138 (399)
T ss_pred             CCCCceEEecCCCceEEEEEccCC-cceeEecCC----CCceEEEEEccCceEEEec-C--------CCccEEEEEcccC
Confidence            344 67777767777788888877 345566654    3456667799999876542 1        1256778888777


Q ss_pred             CcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC
Q 006979          232 NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (623)
Q Consensus       232 ~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D  311 (623)
                      ..  ...+....+-..-..|.|-+..|++-..        ...||++.+..++   ..+++.|..    ....--.+.||
T Consensus       139 ~~--~~~~~~e~~dieWl~WHp~a~illAG~~--------DGsvWmw~ip~~~---~~kv~~Gh~----~~ct~G~f~pd  201 (399)
T KOG0296|consen  139 GE--QWKLDQEVEDIEWLKWHPRAHILLAGST--------DGSVWMWQIPSQA---LCKVMSGHN----SPCTCGEFIPD  201 (399)
T ss_pred             ce--EEEeecccCceEEEEecccccEEEeecC--------CCcEEEEECCCcc---eeeEecCCC----CCcccccccCC
Confidence            62  2334422222334679998876655442        2349999988752   566777765    45556678999


Q ss_pred             CcEEEEEeCCCCeeeEEEEecCCCeEE
Q 006979          312 GELFFVTDRKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       312 G~l~~~~~~~~g~~~L~~~d~~~~~~~  338 (623)
                      |+.++.... +|  .|..+|+.++...
T Consensus       202 GKr~~tgy~-dg--ti~~Wn~ktg~p~  225 (399)
T KOG0296|consen  202 GKRILTGYD-DG--TIIVWNPKTGQPL  225 (399)
T ss_pred             CceEEEEec-Cc--eEEEEecCCCcee
Confidence            995544443 34  4566788888643

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.061  Score=57.14  Aligned_cols=225  Identities=10%  Similarity=0.009  Sum_probs=126.7

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      ++.+. ....+|+++..++  ...+|....   ...+....|+++|++|+.-..+         ..+.++|....+.  +
T Consensus       190 ~laVa-lg~~vylW~~~s~--~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~~---------g~v~iwD~~~~k~--~  252 (484)
T KOG0305|consen  190 VLAVA-LGQSVYLWSASSG--SVTELCSFG---EELVTSVKWSPDGSHLAVGTSD---------GTVQIWDVKEQKK--T  252 (484)
T ss_pred             eEEEE-ecceEEEEecCCC--ceEEeEecC---CCceEEEEECCCCCEEEEeecC---------CeEEEEehhhccc--c
Confidence            44443 3345999998887  667777641   3456778899999999887654         5688888876431  3


Q ss_pred             eeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979          237 KVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (623)
Q Consensus       237 ~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~  315 (623)
                      +.+.. ....+...+|.  +.-+  .....      ...|...|+......  ...+.+..    ..+....|++|++.+
T Consensus       253 ~~~~~~h~~rvg~laW~--~~~l--ssGsr------~~~I~~~dvR~~~~~--~~~~~~H~----qeVCgLkws~d~~~l  316 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWN--SSVL--SSGSR------DGKILNHDVRISQHV--VSTLQGHR----QEVCGLKWSPDGNQL  316 (484)
T ss_pred             ccccCCcCceeEEEecc--CceE--EEecC------CCcEEEEEEecchhh--hhhhhccc----ceeeeeEECCCCCee
Confidence            44444 33345556787  2222  22122      223666666654321  11234444    567889999999633


Q ss_pred             EEEeCCCCeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979          316 FVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (623)
Q Consensus       316 ~~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~  394 (623)
                       .+..  ....++.+|....+ ...++.....+....|.+-.            ..|+.+........|...|..+|+..
T Consensus       317 -ASGg--nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q------------~~lLAsGGGs~D~~i~fwn~~~g~~i  381 (484)
T KOG0305|consen  317 -ASGG--NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ------------SGLLATGGGSADRCIKFWNTNTGARI  381 (484)
T ss_pred             -ccCC--CccceEeccCCCccccEEEeccceeeeEeeeCCCc------------cCceEEcCCCcccEEEEEEcCCCcEe
Confidence             3322  12345556653332 44555566666667777632            23444433333456666777666554


Q ss_pred             ecccCCcceEee--eecCCEEEEEEecCCCCCeEEEE
Q 006979          395 LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKV  429 (623)
Q Consensus       395 ~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~  429 (623)
                      .--.....|..+  +...+.++.........-.||.+
T Consensus       382 ~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~  418 (484)
T KOG0305|consen  382 DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKY  418 (484)
T ss_pred             cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence            322223456666  66677777666544444455555

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.86  E-value=0.16  Score=49.66  Aligned_cols=177  Identities=16%  Similarity=0.167  Sum_probs=83.4

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~  271 (623)
                      ....+|+||.+.|++|....        ..|+.+++++.-   ++.+. .+.+-+-+.++.-+|++ +..+ .+      
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~--------~~i~els~~G~v---lr~i~l~g~~D~EgI~y~g~~~~-vl~~-Er------   84 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEP--------GEIYELSLDGKV---LRRIPLDGFGDYEGITYLGNGRY-VLSE-ER------   84 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTT--------TEEEEEETT--E---EEEEE-SS-SSEEEEEE-STTEE-EEEE-TT------
T ss_pred             ccccEEcCCCCeEEEEECCC--------CEEEEEcCCCCE---EEEEeCCCCCCceeEEEECCCEE-EEEE-cC------
Confidence            56789999999999987653        569999987543   44442 22222344667777753 3332 32      


Q ss_pred             ceEEEEEEecCCCc-e--ee-eEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEec--CCCeEEEEeecc
Q 006979          272 KAELWVGYISENGD-V--YK-RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE--SNNEVLAIYSLD  344 (623)
Q Consensus       272 ~~~L~v~d~~~~~~-~--~~-~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~--~~~~~~~l~~~~  344 (623)
                      ..+|++++++..+. +  .. .....+....-...+-..+|++.++ |+++..+  .-..||.++.  ............
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~~~  162 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDDQD  162 (248)
T ss_dssp             TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-HH
T ss_pred             CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--CChhhEEEccccCccceeeccccc
Confidence            34688888854422 1  11 1121121100003467899999877 6655444  4556888775  222222222110


Q ss_pred             cccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeec
Q 006979          345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL  396 (623)
Q Consensus       345 ~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~l  396 (623)
                      .. .........+.+.+.   |..+++++.+.+  ...|..+|.++..+..+
T Consensus       163 ~~-~~~~~~~d~S~l~~~---p~t~~lliLS~e--s~~l~~~d~~G~~~~~~  208 (248)
T PF06977_consen  163 LD-DDKLFVRDLSGLSYD---PRTGHLLILSDE--SRLLLELDRQGRVVSSL  208 (248)
T ss_dssp             HH--HT--SS---EEEEE---TTTTEEEEEETT--TTEEEEE-TT--EEEEE
T ss_pred             cc-cccceeccccceEEc---CCCCeEEEEECC--CCeEEEECCCCCEEEEE
Confidence            00 001111122344443   266677777743  34567778665544433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=96.83  E-value=0.27  Score=50.82  Aligned_cols=205  Identities=7%  Similarity=-0.028  Sum_probs=98.5

Q ss_pred             CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEEEe
Q 006979           92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS  171 (623)
Q Consensus        92 ~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~~d  171 (623)
                      -.++|+ +..-|-+...-  +++..||-...+   +..+.++.        |+..+....|.++.-+.....++.|+++.
T Consensus       280 ~slKWn-k~G~yilS~~v--D~ttilwd~~~g---~~~q~f~~--------~s~~~lDVdW~~~~~F~ts~td~~i~V~k  345 (524)
T KOG0273|consen  280 FSLKWN-KKGTYILSGGV--DGTTILWDAHTG---TVKQQFEF--------HSAPALDVDWQSNDEFATSSTDGCIHVCK  345 (524)
T ss_pred             EEEEEc-CCCCEEEeccC--CccEEEEeccCc---eEEEeeee--------ccCCccceEEecCceEeecCCCceEEEEE
Confidence            466776 44444443222  366666643322   33333321        22223344554442233334567788877


Q ss_pred             CCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceee
Q 006979          172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRM  251 (623)
Q Consensus       172 ~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~w  251 (623)
                      ++.. .....+...    ...++...|.|.|..|+-.+.|..       -.||.+.-++ .   ...|.....-.....|
T Consensus       346 v~~~-~P~~t~~GH----~g~V~alk~n~tg~LLaS~SdD~T-------lkiWs~~~~~-~---~~~l~~Hskei~t~~w  409 (524)
T KOG0273|consen  346 VGED-RPVKTFIGH----HGEVNALKWNPTGSLLASCSDDGT-------LKIWSMGQSN-S---VHDLQAHSKEIYTIKW  409 (524)
T ss_pred             ecCC-Ccceeeecc----cCceEEEEECCCCceEEEecCCCe-------eEeeecCCCc-c---hhhhhhhccceeeEee
Confidence            7643 223333332    345677889999986665444421       3455443222 1   2333322222334789


Q ss_pred             CCCCCEEEEEEecCCCCCC--CceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEE
Q 006979          252 DPRGERMAWIEWHHPNMPW--DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK  329 (623)
Q Consensus       252 SPDG~~la~~~~~~~~~p~--~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~  329 (623)
                      ||+|. +-...+......|  ..+.|-++|+..+-   ....+....    ..+...+++|||+.+...+. .|.-+|| 
T Consensus       410 sp~g~-v~~n~~~~~~l~sas~dstV~lwdv~~gv---~i~~f~kH~----~pVysvafS~~g~ylAsGs~-dg~V~iw-  479 (524)
T KOG0273|consen  410 SPTGP-VTSNPNMNLMLASASFDSTVKLWDVESGV---PIHTLMKHQ----EPVYSVAFSPNGRYLASGSL-DGCVHIW-  479 (524)
T ss_pred             cCCCC-ccCCCcCCceEEEeecCCeEEEEEccCCc---eeEeeccCC----CceEEEEecCCCcEEEecCC-CCeeEec-
Confidence            99986 2111111000000  12335666776652   222233333    46778999999984444444 4554544 


Q ss_pred             EecCCCeE
Q 006979          330 WIESNNEV  337 (623)
Q Consensus       330 ~d~~~~~~  337 (623)
                       +..+++.
T Consensus       480 -s~~~~~l  486 (524)
T KOG0273|consen  480 -STKTGKL  486 (524)
T ss_pred             -cccchhe
Confidence             4445543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.83  E-value=0.89  Score=48.24  Aligned_cols=228  Identities=10%  Similarity=0.050  Sum_probs=110.2

Q ss_pred             EEEeCCEEEEEeCCCCcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      ....++.|++.. .++.||.+|.++|  +.. +....    ......|... ++ .+++...         .+.|+.+|+
T Consensus       116 ~~v~~~~v~v~~-~~g~l~ald~~tG--~~~W~~~~~----~~~~ssP~v~-~~-~v~v~~~---------~g~l~ald~  177 (394)
T PRK11138        116 VTVAGGKVYIGS-EKGQVYALNAEDG--EVAWQTKVA----GEALSRPVVS-DG-LVLVHTS---------NGMLQALNE  177 (394)
T ss_pred             cEEECCEEEEEc-CCCEEEEEECCCC--CCcccccCC----CceecCCEEE-CC-EEEEECC---------CCEEEEEEc
Confidence            344566776653 5677999999887  321 11111    1223344443 33 4443221         157999999


Q ss_pred             CCCCcccceecccCCC----cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEc-CCCC-Cc---
Q 006979          229 NGQNIQEPKVLVSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-GFDP-TI---  299 (623)
Q Consensus       229 ~~g~~~~~~~l~~~~~----~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~-~~~~-~~---  299 (623)
                      ++|+........ ...    ....|... + ..+++.. .       ...|+.+|.+++..   .+... .... ..   
T Consensus       178 ~tG~~~W~~~~~-~~~~~~~~~~sP~v~-~-~~v~~~~-~-------~g~v~a~d~~~G~~---~W~~~~~~~~~~~~~~  243 (394)
T PRK11138        178 SDGAVKWTVNLD-VPSLTLRGESAPATA-F-GGAIVGG-D-------NGRVSAVLMEQGQL---IWQQRISQPTGATEID  243 (394)
T ss_pred             cCCCEeeeecCC-CCcccccCCCCCEEE-C-CEEEEEc-C-------CCEEEEEEccCChh---hheeccccCCCccchh
Confidence            998732111111 111    12345443 2 3354432 2       23578888776632   11111 1000 00   


Q ss_pred             --cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEE
Q 006979          300 --VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ  377 (623)
Q Consensus       300 --~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~  377 (623)
                        ......|.. .|+.+|+....  |  .|+.+|+.+|+..  ...+  +..+      .....     .++.+|+... 
T Consensus       244 ~~~~~~~sP~v-~~~~vy~~~~~--g--~l~ald~~tG~~~--W~~~--~~~~------~~~~~-----~~~~vy~~~~-  302 (394)
T PRK11138        244 RLVDVDTTPVV-VGGVVYALAYN--G--NLVALDLRSGQIV--WKRE--YGSV------NDFAV-----DGGRIYLVDQ-  302 (394)
T ss_pred             cccccCCCcEE-ECCEEEEEEcC--C--eEEEEECCCCCEE--Eeec--CCCc------cCcEE-----ECCEEEEEcC-
Confidence              001123333 24545554432  3  6889999888632  1111  1111      01111     5677777653 


Q ss_pred             CCeEEEEEEeCCCCceee-cc-cCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          378 NGRSYLGILDDFGHSLSL-LD-IPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       378 ~g~~~L~~~d~~~~~~~~-lt-~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                        ..+|+.+|..+|+..- .. ............++++|+...    ...|+.++.++|+.
T Consensus       303 --~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~----~G~l~~ld~~tG~~  357 (394)
T PRK11138        303 --NDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDS----EGYLHWINREDGRF  357 (394)
T ss_pred             --CCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeC----CCEEEEEECCCCCE
Confidence              2468899998886431 11 111112222234677765432    25799999988874

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.82  E-value=0.43  Score=46.36  Aligned_cols=184  Identities=14%  Similarity=0.103  Sum_probs=90.6

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE-EcCC-CCC
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGF-DPT  298 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~-~~~~-~~~  298 (623)
                      ..|+.+|..+|+......+  ...+...|  ..++..|++...        ...|+.+|..++.   ..+. .... +..
T Consensus        46 ~~l~~~d~~tG~~~W~~~~--~~~~~~~~--~~~~~~v~v~~~--------~~~l~~~d~~tG~---~~W~~~~~~~~~~  110 (238)
T PF13360_consen   46 GNLYALDAKTGKVLWRFDL--PGPISGAP--VVDGGRVYVGTS--------DGSLYALDAKTGK---VLWSIYLTSSPPA  110 (238)
T ss_dssp             SEEEEEETTTSEEEEEEEC--SSCGGSGE--EEETTEEEEEET--------TSEEEEEETTTSC---EEEEEEE-SSCTC
T ss_pred             CEEEEEECCCCCEEEEeec--ccccccee--eecccccccccc--------eeeeEecccCCcc---eeeeecccccccc
Confidence            6799999988873222222  23333334  335566766652        2269999977764   2222 1211 101


Q ss_pred             ccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccc-ccc-CcceeEEeecCCCCEEEEEEE
Q 006979          299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW-VFG-INSYEIIQSHGEKNLIACSYR  376 (623)
Q Consensus       299 ~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w-~~~-~~~~~~l~~s~~~~~l~~~~~  376 (623)
                        ..........++..+++...   ...|+.+|+.+|+..--.+.......... ... ...-..+    .++.+++.. 
T Consensus       111 --~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~-  180 (238)
T PF13360_consen  111 --GVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI----SDGRVYVSS-  180 (238)
T ss_dssp             --STB--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC----CTTEEEEEC-
T ss_pred             --ccccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE----ECCEEEEEc-
Confidence              11122233334553444432   24689999999875322221110000000 000 0011122    334555544 


Q ss_pred             ECCeEEEEEEeCCCCceeecccCCcceEe-eeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          377 QNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       377 ~~g~~~L~~~d~~~~~~~~lt~~~~~v~~-~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      .++.  ++.+|..+++..- ......... ...+++.+++...    ...|+.+|+++|+.
T Consensus       181 ~~g~--~~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~l~~~~~----~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  181 GDGR--VVAVDLATGEKLW-SKPISGIYSLPSVDGGTLYVTSS----DGRLYALDLKTGKV  234 (238)
T ss_dssp             CTSS--EEEEETTTTEEEE-EECSS-ECECEECCCTEEEEEET----TTEEEEEETTTTEE
T ss_pred             CCCe--EEEEECCCCCEEE-EecCCCccCCceeeCCEEEEEeC----CCEEEEEECCCCCE
Confidence            3443  6666998887432 222223333 3667777777652    37899999999973

...

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.82  E-value=0.22  Score=55.49  Aligned_cols=146  Identities=14%  Similarity=0.102  Sum_probs=86.9

Q ss_pred             EeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec
Q 006979          160 SNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL  239 (623)
Q Consensus       160 ~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l  239 (623)
                      +...++.+.++..+.+ .....|+.-    .....+.+++-+|+++++..+|         ..|-+++..+...  .+.+
T Consensus        71 ~~s~~~tv~~y~fps~-~~~~iL~Rf----tlp~r~~~v~g~g~~iaagsdD---------~~vK~~~~~D~s~--~~~l  134 (933)
T KOG1274|consen   71 TGSEQNTVLRYKFPSG-EEDTILARF----TLPIRDLAVSGSGKMIAAGSDD---------TAVKLLNLDDSSQ--EKVL  134 (933)
T ss_pred             EeeccceEEEeeCCCC-Cccceeeee----eccceEEEEecCCcEEEeecCc---------eeEEEEeccccch--heee
Confidence            3334566777777665 222244432    2334567899999999987665         5577788776541  3344


Q ss_pred             ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC--Cc--cccCcCceeCCCCc-E
Q 006979          240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP--TI--VESPTEPKWSSKGE-L  314 (623)
Q Consensus       240 ~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~ws~DG~-l  314 (623)
                      -....-+.+..++|.|..||....+.        .|++++++++..   ...+.+-.+  +.  ......++|+|+|. +
T Consensus       135 rgh~apVl~l~~~p~~~fLAvss~dG--------~v~iw~~~~~~~---~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l  203 (933)
T KOG1274|consen  135 RGHDAPVLQLSYDPKGNFLAVSSCDG--------KVQIWDLQDGIL---SKTLTGVDKDNEFILSRICTRLAWHPKGGTL  203 (933)
T ss_pred             cccCCceeeeeEcCCCCEEEEEecCc--------eEEEEEcccchh---hhhcccCCccccccccceeeeeeecCCCCeE
Confidence            33334566788999999999886443        488889987632   111221111  00  13457899999965 6


Q ss_pred             EEEEeCCCCeeeEEEEecCCCe
Q 006979          315 FFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       315 ~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                      ++..-+  +.  +..|+..+.+
T Consensus       204 a~~~~d--~~--Vkvy~r~~we  221 (933)
T KOG1274|consen  204 AVPPVD--NT--VKVYSRKGWE  221 (933)
T ss_pred             EeeccC--Ce--EEEEccCCce
Confidence            665544  32  3444444543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=96.81  E-value=0.12  Score=49.34  Aligned_cols=214  Identities=8%  Similarity=-0.054  Sum_probs=104.9

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      -++++...+..|.++|...+  +...-+..    ..--....|+|+|+++++...+         ..|-.+|..+-+   
T Consensus        78 d~~atas~dk~ir~wd~r~~--k~~~~i~~----~~eni~i~wsp~g~~~~~~~kd---------D~it~id~r~~~---  139 (313)
T KOG1407|consen   78 DLFATASGDKTIRIWDIRSG--KCTARIET----KGENINITWSPDGEYIAVGNKD---------DRITFIDARTYK---  139 (313)
T ss_pred             cceEEecCCceEEEEEeccC--cEEEEeec----cCcceEEEEcCCCCEEEEecCc---------ccEEEEEecccc---
Confidence            35555556666888888766  44333322    1111236799999999887554         457778876654   


Q ss_pred             ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~  315 (623)
                      +..-..-.-+.....|+-++. ++|+. +.      .+.+-++....-.   ...-+...+    ....-+.++|+|+.+
T Consensus       140 ~~~~~~~~~e~ne~~w~~~nd-~Fflt-~G------lG~v~ILsypsLk---pv~si~AH~----snCicI~f~p~Gryf  204 (313)
T KOG1407|consen  140 IVNEEQFKFEVNEISWNNSND-LFFLT-NG------LGCVEILSYPSLK---PVQSIKAHP----SNCICIEFDPDGRYF  204 (313)
T ss_pred             eeehhcccceeeeeeecCCCC-EEEEe-cC------CceEEEEeccccc---cccccccCC----cceEEEEECCCCceE
Confidence            211112223455567886655 77776 22      2335555544331   222233333    234457899999833


Q ss_pred             EEEeCCCCeeeEEEEecCCC-eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCC-ce
Q 006979          316 FVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH-SL  393 (623)
Q Consensus       316 ~~~~~~~g~~~L~~~d~~~~-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~-~~  393 (623)
                      .+... +..-.|  +|++.- -.|.++..+..+...         .|..   +|+.|. +..++-.-.|.  +.++| ++
T Consensus       205 A~GsA-DAlvSL--WD~~ELiC~R~isRldwpVRTl---------SFS~---dg~~lA-SaSEDh~IDIA--~vetGd~~  266 (313)
T KOG1407|consen  205 ATGSA-DALVSL--WDVDELICERCISRLDWPVRTL---------SFSH---DGRMLA-SASEDHFIDIA--EVETGDRV  266 (313)
T ss_pred             eeccc-cceeec--cChhHhhhheeeccccCceEEE---------Eecc---Ccceee-ccCccceEEeE--ecccCCeE
Confidence            33222 223333  343221 134454444444333         3331   655444 33344443333  33333 34


Q ss_pred             eecccCCcceEe-eeecCCEEEEEEecC
Q 006979          394 SLLDIPFTDIDN-ITLGNDCLFVEGASG  420 (623)
Q Consensus       394 ~~lt~~~~~v~~-~~~~~~~~~~~~~s~  420 (623)
                      .++......+.- ..+....++|...+.
T Consensus       267 ~eI~~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  267 WEIPCEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             EEeeccCCceeEEecCCCceeeEEecCC
Confidence            455443222221 145555566655543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.81  E-value=0.16  Score=51.28  Aligned_cols=194  Identities=10%  Similarity=0.028  Sum_probs=103.1

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC-Cc-eEEEEEEecCCCceeeeEEEcCCCCC
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW-DK-AELWVGYISENGDVYKRVCVAGFDPT  298 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~-~~-~~L~v~d~~~~~~~~~~~~~~~~~~~  298 (623)
                      .++|++|.++++   ..=.. ...+..+...||||+.+|..+.--+..-+ .. --|-++|..+-.. .....++.....
T Consensus        17 ~rv~viD~d~~k---~lGmi-~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~-~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGK---LLGMI-DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP-TGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTE---EEEEE-EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE-EEEEEETTS-B-
T ss_pred             ceEEEEECCCCc---EEEEe-ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc-cceEecCCcchh
Confidence            689999998876   32222 12355567799999999865521110000 11 1245556555422 223334433101


Q ss_pred             -ccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEE
Q 006979          299 -IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ  377 (623)
Q Consensus       299 -~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~  377 (623)
                       -..+......+.||+.+++.+. .....+-++|++.++...-.+...+.....+              .++. +.+...
T Consensus        92 ~~~~~~~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~--------------~~~~-F~~lC~  155 (342)
T PF06433_consen   92 QVVPYKNMFALSADGKFLYVQNF-TPATSVTVVDLAAKKVVGEIDTPGCWLIYPS--------------GNRG-FSMLCG  155 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEEGTSEEEEEEE--------------ETTE-EEEEET
T ss_pred             eecccccceEEccCCcEEEEEcc-CCCCeEEEEECCCCceeeeecCCCEEEEEec--------------CCCc-eEEEec
Confidence             0123456688999996666666 6777888999998875443332222111111              2233 335556


Q ss_pred             CCeEEEEEEeCCCCceeecccCCc---c--e-Eee-eecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          378 NGRSYLGILDDFGHSLSLLDIPFT---D--I-DNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       378 ~g~~~L~~~d~~~~~~~~lt~~~~---~--v-~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      +|.-.-+.+|.+++..+..+..+.   +  + .+. +..+++++|+.-    ...+|.+++.+.+.+.+
T Consensus       156 DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~  220 (342)
T PF06433_consen  156 DGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFG  220 (342)
T ss_dssp             TSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEE
T ss_pred             CCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEeccCCccccc
Confidence            777777777776665543322111   1  1 111 345677887643    26899999888765443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=96.80  E-value=0.074  Score=51.50  Aligned_cols=227  Identities=13%  Similarity=0.109  Sum_probs=112.5

Q ss_pred             CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccC-CCCCCceeEEEEEEcCCCC-----cccce
Q 006979          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR-QDALNSTTEIVAIALNGQN-----IQEPK  237 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~-~~~~~~~~~L~~idl~~g~-----~~~~~  237 (623)
                      ++++.+++++.+  ..+.+......+.+-+.+.+-+|-.++|+.+.-+.. .........||.++-.-+.     ++.+.
T Consensus        39 dNqVhll~~d~e--~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~  116 (370)
T KOG1007|consen   39 DNQVHLLRLDSE--GSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA  116 (370)
T ss_pred             cceeEEEEecCc--cchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence            466877777654  233333221122334556677887777877765432 1111123457777543332     11122


Q ss_pred             ecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC--CCc-
Q 006979          238 VLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGE-  313 (623)
Q Consensus       238 ~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~--DG~-  313 (623)
                      .|. ..-....-..|-|++.+|+-+.  ++       .|.+++++.+..+. ..+..............-+|+|  ||. 
T Consensus       117 ~Ldteavg~i~cvew~Pns~klasm~--dn-------~i~l~~l~ess~~v-aev~ss~s~e~~~~ftsg~WspHHdgnq  186 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEPNSDKLASMD--DN-------NIVLWSLDESSKIV-AEVLSSESAEMRHSFTSGAWSPHHDGNQ  186 (370)
T ss_pred             cCCHHHhCceeeEEEcCCCCeeEEec--cC-------ceEEEEcccCcchh-eeecccccccccceecccccCCCCccce
Confidence            222 1122345578999999998775  22       27777877663321 1121111111124567789998  676 


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~  392 (623)
                      +....+.     .|..+|..+.+. -.|  ++.. +.     -.+++.|.   |+.+.++++-.++|.-+||-....+--
T Consensus       187 v~tt~d~-----tl~~~D~RT~~~~~sI--~dAH-gq-----~vrdlDfN---pnkq~~lvt~gDdgyvriWD~R~tk~p  250 (370)
T KOG1007|consen  187 VATTSDS-----TLQFWDLRTMKKNNSI--EDAH-GQ-----RVRDLDFN---PNKQHILVTCGDDGYVRIWDTRKTKFP  250 (370)
T ss_pred             EEEeCCC-----cEEEEEccchhhhcch--hhhh-cc-----eeeeccCC---CCceEEEEEcCCCccEEEEeccCCCcc
Confidence            4433332     466666554321 111  1110 00     00122222   155667777778888888754433333


Q ss_pred             eeecccCCcceEee--eecCCEEEEEEe
Q 006979          393 LSLLDIPFTDIDNI--TLGNDCLFVEGA  418 (623)
Q Consensus       393 ~~~lt~~~~~v~~~--~~~~~~~~~~~~  418 (623)
                      ++.|.....++..+  .+.-+.+++.++
T Consensus       251 v~el~~HsHWvW~VRfn~~hdqLiLs~~  278 (370)
T KOG1007|consen  251 VQELPGHSHWVWAVRFNPEHDQLILSGG  278 (370)
T ss_pred             ccccCCCceEEEEEEecCccceEEEecC
Confidence            44554444445554  455555555554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.79  E-value=0.37  Score=56.26  Aligned_cols=154  Identities=5%  Similarity=-0.068  Sum_probs=83.4

Q ss_pred             ceEEEeCC-EEEEEeCCCCcEEEEeCCCCC---CC----ceecCCCCCCCCeeecceeeCCC-CCEEEEEEeccCCCCCC
Q 006979          148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKD---SS----PLPITPDYGEPLVSYADGIFDPR-FNRYVTVREDRRQDALN  218 (623)
Q Consensus       148 ~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~---~~----~~~Lt~~~~~~~~~~~d~~~sPd-G~~l~~v~~~~~~~~~~  218 (623)
                      .+..++++ .++++...++.|.++++....   ..    ...+..     ........|+|. +++|+....+       
T Consensus       487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~~las~~~D-------  554 (793)
T PLN00181        487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-----RSKLSGICWNSYIKSQVASSNFE-------  554 (793)
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-----cCceeeEEeccCCCCEEEEEeCC-------
Confidence            34555544 455666678888888875310   00    001111     123456778875 5555544332       


Q ss_pred             ceeEEEEEEcCCCCcccceecccCCCcccceeeCC-CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979          219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP  297 (623)
Q Consensus       219 ~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSP-DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~  297 (623)
                        ..|.++|+.+++.  ...+....+.+....|+| ||..|+-...|        ..|.++|+..+..   ...+.. . 
T Consensus       555 --g~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D--------g~v~iWd~~~~~~---~~~~~~-~-  617 (793)
T PLN00181        555 --GVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDD--------GSVKLWSINQGVS---IGTIKT-K-  617 (793)
T ss_pred             --CeEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCC--------CEEEEEECCCCcE---EEEEec-C-
Confidence              5688889887652  333433344566678997 77766644422        3478888876532   112222 1 


Q ss_pred             CccccCcCceeC-CCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979          298 TIVESPTEPKWS-SKGELFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       298 ~~~~~~~~~~ws-~DG~l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                         ..+....|. ++|.+++.... ++  .|+.+|....+
T Consensus       618 ---~~v~~v~~~~~~g~~latgs~-dg--~I~iwD~~~~~  651 (793)
T PLN00181        618 ---ANICCVQFPSESGRSLAFGSA-DH--KVYYYDLRNPK  651 (793)
T ss_pred             ---CCeEEEEEeCCCCCEEEEEeC-CC--eEEEEECCCCC
Confidence               234456774 56775544443 34  46666765543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.78  E-value=0.02  Score=62.34  Aligned_cols=143  Identities=16%  Similarity=0.137  Sum_probs=83.2

Q ss_pred             EEeCCEEEEEeCC-CC--cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          151 RIFGDTVIFSNYK-DQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       151 ~~s~d~l~f~~~~-~~--~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      .+++-..||.... |+  +||..|-.    .+.++-.+.   -..+.-..|+|+.++++--+.|         ..+-++|
T Consensus       500 ~F~P~GyYFatas~D~tArLWs~d~~----~PlRifagh---lsDV~cv~FHPNs~Y~aTGSsD---------~tVRlWD  563 (707)
T KOG0263|consen  500 QFAPRGYYFATASHDQTARLWSTDHN----KPLRIFAGH---LSDVDCVSFHPNSNYVATGSSD---------RTVRLWD  563 (707)
T ss_pred             EecCCceEEEecCCCceeeeeecccC----Cchhhhccc---ccccceEEECCcccccccCCCC---------ceEEEEE
Confidence            3345566776432 22  46666542    333333220   1112226699999987765443         3455567


Q ss_pred             cCCCCcccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          228 LNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       228 l~~g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                      ..+|.   ..++..| ...+...++||+|++|+-...        ...|.++|+..+..   ...+.+..    ..+...
T Consensus       564 v~~G~---~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e--------d~~I~iWDl~~~~~---v~~l~~Ht----~ti~Sl  625 (707)
T KOG0263|consen  564 VSTGN---SVRIFTGHKGPVTALAFSPCGRYLASGDE--------DGLIKIWDLANGSL---VKQLKGHT----GTIYSL  625 (707)
T ss_pred             cCCCc---EEEEecCCCCceEEEEEcCCCceEeeccc--------CCcEEEEEcCCCcc---hhhhhccc----CceeEE
Confidence            77776   4455544 455667889999999985542        23488889987632   22233333    567789


Q ss_pred             eeCCCCcEEEEEeCCCCeeeEE
Q 006979          307 KWSSKGELFFVTDRKNGFWNLH  328 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~g~~~L~  328 (623)
                      .|+.||.++..... +..-+||
T Consensus       626 sFS~dg~vLasgg~-DnsV~lW  646 (707)
T KOG0263|consen  626 SFSRDGNVLASGGA-DNSVRLW  646 (707)
T ss_pred             EEecCCCEEEecCC-CCeEEEE
Confidence            99999985554433 3444555

>PLN02733 phosphatidylcholine-sterol O-acyltransferase

Probab=96.75  E-value=0.0019  Score=68.65  Aligned_cols=88  Identities=14%  Similarity=0.103  Sum_probs=61.8

Q ss_pred             CcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHH
Q 006979          511 GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA  590 (623)
Q Consensus       511 ~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~  590 (623)
                      ..|...++.|.+.||.+ ..|.+|   +|.+|+...   .....++++.+.++.+.++.  ..++|.|+||||||.+++.
T Consensus       108 ~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~  178 (440)
T PLN02733        108 YYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQSN---RLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKC  178 (440)
T ss_pred             HHHHHHHHHHHHcCCcc-CCCccc---CCCCccccc---cHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHH
Confidence            45667889999999876 788888   555555321   11223567777777776542  2369999999999999998


Q ss_pred             Hh-cCCC----ceeEEEecccC
Q 006979          591 AL-AFRD----TFKAGASLYGV  607 (623)
Q Consensus       591 ~~-~~~~----~f~a~v~~~g~  607 (623)
                      .+ .+++    .++..|++++.
T Consensus       179 fl~~~p~~~~k~I~~~I~la~P  200 (440)
T PLN02733        179 FMSLHSDVFEKYVNSWIAIAAP  200 (440)
T ss_pred             HHHHCCHhHHhHhccEEEECCC
Confidence            77 6665    35666766654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.74  E-value=0.053  Score=54.20  Aligned_cols=160  Identities=10%  Similarity=0.020  Sum_probs=93.1

Q ss_pred             CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      +.+..+..+++++.  ...+||++|+.+- .-...+...+ +.+....+++.++.+.+++|=...       ..++++++
T Consensus        90 IL~VrmNr~RLvV~--Lee~IyIydI~~M-klLhTI~t~~-~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~  158 (391)
T KOG2110|consen   90 ILAVRMNRKRLVVC--LEESIYIYDIKDM-KLLHTIETTP-PNPKGLCALSPNNANCYLAYPGST-------TSGDVVLF  158 (391)
T ss_pred             eEEEEEccceEEEE--EcccEEEEecccc-eeehhhhccC-CCccceEeeccCCCCceEEecCCC-------CCceEEEE
Confidence            44555556666555  2334999999753 1111111110 112234455566666788884221       23789999


Q ss_pred             EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                      |+.+-+  .+..+....+..+..+|||||..||-.+ +.      ++-|.|+.+..+..+.+   +..+-  ....+.+.
T Consensus       159 d~~nl~--~v~~I~aH~~~lAalafs~~G~llATAS-eK------GTVIRVf~v~~G~kl~e---FRRG~--~~~~IySL  224 (391)
T KOG2110|consen  159 DTINLQ--PVNTINAHKGPLAALAFSPDGTLLATAS-EK------GTVIRVFSVPEGQKLYE---FRRGT--YPVSIYSL  224 (391)
T ss_pred             Ecccce--eeeEEEecCCceeEEEECCCCCEEEEec-cC------ceEEEEEEcCCccEeee---eeCCc--eeeEEEEE
Confidence            987643  1333443344566788999999998664 32      56688888877632111   11111  11456788


Q ss_pred             eeCCCCcEEEEEeCCCCeeeEEEEec
Q 006979          307 KWSSKGELFFVTDRKNGFWNLHKWIE  332 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~g~~~L~~~d~  332 (623)
                      .|++|++++..+.. .+.-++++++.
T Consensus       225 ~Fs~ds~~L~~sS~-TeTVHiFKL~~  249 (391)
T KOG2110|consen  225 SFSPDSQFLAASSN-TETVHIFKLEK  249 (391)
T ss_pred             EECCCCCeEEEecC-CCeEEEEEecc
Confidence            99999995544444 58888888764

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=96.74  E-value=0.084  Score=59.49  Aligned_cols=103  Identities=15%  Similarity=0.160  Sum_probs=64.6

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~  271 (623)
                      ++.++..+|+++.++++...-........+.+|+.|...     ++.++.+ .....+.|||||+.+++...+..    .
T Consensus        14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~-~~~~~~~~spdg~~~~~~~~~~~----~   83 (620)
T COG1506          14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT-----VRLLTFG-GGVSELRWSPDGSVLAFVSTDGG----R   83 (620)
T ss_pred             cccCcccCCCCceeEEeeccccccccccccceEEEeccc-----ccccccC-CcccccccCCCCCEEEEEeccCC----C
Confidence            466788999999999987642222223446788866433     2233333 33456899999999999983332    2


Q ss_pred             ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEE
Q 006979          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF  316 (623)
Q Consensus       272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~  316 (623)
                      ..++|+++.. + .      .....    ..+..+.|+++|+ +.+
T Consensus        84 ~~~l~l~~~~-g-~------~~~~~----~~v~~~~~~~~g~~~~~  117 (620)
T COG1506          84 VAQLYLVDVG-G-L------ITKTA----FGVSDARWSPDGDRIAF  117 (620)
T ss_pred             cceEEEEecC-C-c------eeeee----cccccceeCCCCCeEEE
Confidence            5678998876 3 1      11111    3345778888887 555

>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]

Probab=96.70  E-value=0.002  Score=66.73  Aligned_cols=128  Identities=18%  Similarity=0.174  Sum_probs=83.4

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC-HHhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCc
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWG  551 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~-~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g  551 (623)
                      .++.-++.|.. +     ..+.-++|+++||+.-...+.++ .....|+. ...+|+.+|||= |-+|-=+......-.|
T Consensus       120 CLYlNVW~P~~-~-----p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRv-G~FGFL~l~~~~eaPG  192 (601)
T KOG4389|consen  120 CLYLNVWAPAA-D-----PYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRV-GAFGFLYLPGHPEAPG  192 (601)
T ss_pred             ceEEEEeccCC-C-----CCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeee-ccceEEecCCCCCCCC
Confidence            47777888842 1     22334899999996544444444 23445555 457888899993 2233322211222334


Q ss_pred             cchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-c--CCCceeEEEecccCC
Q 006979          552 IVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-A--FRDTFKAGASLYGVS  608 (623)
Q Consensus       552 ~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~--~~~~f~a~v~~~g~~  608 (623)
                      ..-.-|..-|++|+.++-   --||+||.++|-|+|..-+.+.+ .  -..+|+-+|..+|-.
T Consensus       193 NmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~  255 (601)
T KOG4389|consen  193 NMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSL  255 (601)
T ss_pred             ccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCC
Confidence            444779999999998862   25899999999999988776555 2  234888888888753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.70  E-value=0.025  Score=63.74  Aligned_cols=114  Identities=11%  Similarity=0.032  Sum_probs=65.5

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc--------CCCCc------ccceecccCCCcccceeeCCCCCEE
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL--------NGQNI------QEPKVLVSGSDFYAFPRMDPRGERM  258 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl--------~~g~~------~~~~~l~~~~~~~~~p~wSPDG~~l  258 (623)
                      .+-.+|||||++|+.-.+|.       .-.+|..+.        .+|..      .....+.....-+....||||+++|
T Consensus        72 v~CVR~S~dG~~lAsGSDD~-------~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l  144 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGSDDR-------LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL  144 (942)
T ss_pred             eeEEEECCCCCeEeeccCcc-------eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence            45577999999998866642       123344331        00110      0111222222224567899999999


Q ss_pred             EEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEE
Q 006979          259 AWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKW  330 (623)
Q Consensus       259 a~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~  330 (623)
                      +-.+.|.        .+.+++..+.+   ...++.+..    .-+-...|.|=|+ +.-++++  ..-.+|+.
T Consensus       145 vS~s~Dn--------sViiwn~~tF~---~~~vl~~H~----s~VKGvs~DP~Gky~ASqsdD--rtikvwrt  200 (942)
T KOG0973|consen  145 VSVSLDN--------SVIIWNAKTFE---LLKVLRGHQ----SLVKGVSWDPIGKYFASQSDD--RTLKVWRT  200 (942)
T ss_pred             EEecccc--------eEEEEccccce---eeeeeeccc----ccccceEECCccCeeeeecCC--ceEEEEEc
Confidence            8777554        36677766552   344555554    5567899999997 4444433  44556653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.69  E-value=1.1  Score=47.49  Aligned_cols=230  Identities=11%  Similarity=0.059  Sum_probs=107.3

Q ss_pred             eEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEEEeCC
Q 006979           94 TAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSID  173 (623)
Q Consensus        94 ~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~~d~~  173 (623)
                      +.+. ++++|....    +|  .|+.++..+| +..+-.+..-.    +    ..+-.+.++.+++ ...++.|+.+|.+
T Consensus       116 ~~v~-~~~v~v~~~----~g--~l~ald~~tG-~~~W~~~~~~~----~----~ssP~v~~~~v~v-~~~~g~l~ald~~  178 (394)
T PRK11138        116 VTVA-GGKVYIGSE----KG--QVYALNAEDG-EVAWQTKVAGE----A----LSRPVVSDGLVLV-HTSNGMLQALNES  178 (394)
T ss_pred             cEEE-CCEEEEEcC----CC--EEEEEECCCC-CCcccccCCCc----e----ecCCEEECCEEEE-ECCCCEEEEEEcc
Confidence            3444 667765431    12  3677776554 55554432200    0    1122334555555 4456779999998


Q ss_pred             CCCCCce-ecCCCCCCCCe---eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC------
Q 006979          174 SKDSSPL-PITPDYGEPLV---SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS------  243 (623)
Q Consensus       174 ~g~~~~~-~Lt~~~~~~~~---~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~------  243 (623)
                      +|  +.. .....  .+..   ....|... ++ .+++...+         +.++.+|+.+|+......+....      
T Consensus       179 tG--~~~W~~~~~--~~~~~~~~~~sP~v~-~~-~v~~~~~~---------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~  243 (394)
T PRK11138        179 DG--AVKWTVNLD--VPSLTLRGESAPATA-FG-GAIVGGDN---------GRVSAVLMEQGQLIWQQRISQPTGATEID  243 (394)
T ss_pred             CC--CEeeeecCC--CCcccccCCCCCEEE-CC-EEEEEcCC---------CEEEEEEccCChhhheeccccCCCccchh
Confidence            87  321 22111  0010   11233333 23 34443221         56899999888632222221110      


Q ss_pred             ---CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979          244 ---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       244 ---~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~  320 (623)
                         +....|..  .+..|++...        ...|+.+|..++.   ..+... .     .....+.. .++++|+....
T Consensus       244 ~~~~~~~sP~v--~~~~vy~~~~--------~g~l~ald~~tG~---~~W~~~-~-----~~~~~~~~-~~~~vy~~~~~  303 (394)
T PRK11138        244 RLVDVDTTPVV--VGGVVYALAY--------NGNLVALDLRSGQ---IVWKRE-Y-----GSVNDFAV-DGGRIYLVDQN  303 (394)
T ss_pred             cccccCCCcEE--ECCEEEEEEc--------CCeEEEEECCCCC---EEEeec-C-----CCccCcEE-ECCEEEEEcCC
Confidence               11233443  3445665542        2358999988773   222111 1     11122322 24446665433


Q ss_pred             CCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979          321 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (623)
Q Consensus       321 ~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~  394 (623)
                          .+|+.+|+.+|+..  ...+. .....+.    +..+     .++.+|+.. .+|  .|+.+|.++|++.
T Consensus       304 ----g~l~ald~~tG~~~--W~~~~-~~~~~~~----sp~v-----~~g~l~v~~-~~G--~l~~ld~~tG~~~  358 (394)
T PRK11138        304 ----DRVYALDTRGGVEL--WSQSD-LLHRLLT----APVL-----YNGYLVVGD-SEG--YLHWINREDGRFV  358 (394)
T ss_pred             ----CeEEEEECCCCcEE--Ecccc-cCCCccc----CCEE-----ECCEEEEEe-CCC--EEEEEECCCCCEE
Confidence                36889998887532  11100 0000111    1111     345666543 344  5888898888754

>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]

Probab=96.65  E-value=0.0095  Score=59.35  Aligned_cols=102  Identities=16%  Similarity=0.046  Sum_probs=63.0

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      .++.|.++++||--++.  ..|......++. .|--|+.+|.|-.|.+...     ...-+....+|+...++....+..
T Consensus        49 ~~~~Pp~i~lHGl~GS~--~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~-----~~h~~~~ma~dv~~Fi~~v~~~~~  121 (315)
T KOG2382|consen   49 LERAPPAIILHGLLGSK--ENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKI-----TVHNYEAMAEDVKLFIDGVGGSTR  121 (315)
T ss_pred             cCCCCceEEecccccCC--CCHHHHHHHhcccccCceEEEecccCCCCccc-----cccCHHHHHHHHHHHHHHcccccc
Confidence            56678888999984443  455556666654 4778999998875443221     111133445666666666654433


Q ss_pred             CCCCceEEEEcChHH-HHHHHHh-cCCCceeEEE
Q 006979          571 ADEKRLCITGGSAGG-YTTLAAL-AFRDTFKAGA  602 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG-~~~~~~~-~~~~~f~a~v  602 (623)
                      .  .++.|+|||||| -++++.. +.|+...-+|
T Consensus       122 ~--~~~~l~GHsmGG~~~~m~~t~~~p~~~~rli  153 (315)
T KOG2382|consen  122 L--DPVVLLGHSMGGVKVAMAETLKKPDLIERLI  153 (315)
T ss_pred             c--CCceecccCcchHHHHHHHHHhcCcccceeE
Confidence            3  589999999999 4444444 5676544333

>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]

Probab=96.64  E-value=0.0075  Score=56.08  Aligned_cols=107  Identities=19%  Similarity=0.120  Sum_probs=78.4

Q ss_pred             CCEEEEecCCCCCcc-cCcCCHHhHHHHcCceEEEEECCCCCC-CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979          495 PPLLVKSHGGPTSEA-RGILNLSIQYWTSRGWAFVDVNYGGST-GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD  572 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~-~~~~~~~~~~~a~~G~~v~~~d~rGs~-~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d  572 (623)
                      .-.|||+-|-..+-- .........++-+.+|..+.+-.|.+- |||....        ..+.+|+..+++++...++- 
T Consensus        36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~sl--------k~D~edl~~l~~Hi~~~~fS-  106 (299)
T KOG4840|consen   36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSL--------KDDVEDLKCLLEHIQLCGFS-  106 (299)
T ss_pred             EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccc--------cccHHHHHHHHHHhhccCcc-
Confidence            345666644322111 122345677888999999999988653 3554322        35789999999999877654 


Q ss_pred             CCceEEEEcChHHHHHHHHhc---CCCceeEEEecccCCCHH
Q 006979          573 EKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~~---~~~~f~a~v~~~g~~d~~  611 (623)
                       ..|.++|||-|..-.++.++   .+..+.|+|..+|++|-+
T Consensus       107 -t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE  147 (299)
T KOG4840|consen  107 -TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE  147 (299)
T ss_pred             -cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence             49999999999999888873   477899999999999987

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.37  Score=50.85  Aligned_cols=197  Identities=13%  Similarity=0.118  Sum_probs=113.1

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++.....++.+.++|..+. .....+..+     ..-....++|+++.++.......      .+.+.++|..++..  
T Consensus        87 ~vyv~~~~~~~v~vid~~~~-~~~~~~~vG-----~~P~~~~~~~~~~~vYV~n~~~~------~~~vsvid~~t~~~--  152 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATN-TVLGSIPVG-----LGPVGLAVDPDGKYVYVANAGNG------NNTVSVIDAATNKV--  152 (381)
T ss_pred             eEEEecCCCCeEEEEcCccc-ceeeEeeec-----cCCceEEECCCCCEEEEEecccC------CceEEEEeCCCCeE--
Confidence            56666656677999986543 111222221     12345779999998877654321      16799999988763  


Q ss_pred             ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE----EcCCCCCccccCcCceeCCC
Q 006979          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC----VAGFDPTIVESPTEPKWSSK  311 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ws~D  311 (623)
                      ...+..+.. .....++|||++++... .      ....|.++|.+...   ..+-    .-...    .......+++|
T Consensus       153 ~~~~~vG~~-P~~~a~~p~g~~vyv~~-~------~~~~v~vi~~~~~~---v~~~~~~~~~~~~----~~P~~i~v~~~  217 (381)
T COG3391         153 TATIPVGNT-PTGVAVDPDGNKVYVTN-S------DDNTVSVIDTSGNS---VVRGSVGSLVGVG----TGPAGIAVDPD  217 (381)
T ss_pred             EEEEecCCC-cceEEECCCCCeEEEEe-c------CCCeEEEEeCCCcc---eeccccccccccC----CCCceEEECCC
Confidence            122222221 24567999999887664 2      24568888865541   1110    01111    35568899999


Q ss_pred             CcEEEEEeCCCCeeeEEEEecCCCeEEEEe-ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC
Q 006979          312 GELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (623)
Q Consensus       312 G~l~~~~~~~~g~~~L~~~d~~~~~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~  390 (623)
                      |+.+|+.+..+....+.++|..++...... +....  .+      .....   +|+++.+|.....  ...++.+|..+
T Consensus       218 g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~------~~v~~---~p~g~~~yv~~~~--~~~V~vid~~~  284 (381)
T COG3391         218 GNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--AP------RGVAV---DPAGKAAYVANSQ--GGTVSVIDGAT  284 (381)
T ss_pred             CCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CC------CceeE---CCCCCEEEEEecC--CCeEEEEeCCC
Confidence            995556655243467888998887655431 11110  00      01112   2377777776543  45677787666


Q ss_pred             Ccee
Q 006979          391 HSLS  394 (623)
Q Consensus       391 ~~~~  394 (623)
                      ..+.
T Consensus       285 ~~v~  288 (381)
T COG3391         285 DRVV  288 (381)
T ss_pred             Ccee
Confidence            5443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.52  E-value=1.1  Score=47.19  Aligned_cols=235  Identities=10%  Similarity=0.043  Sum_probs=109.8

Q ss_pred             EEeCCEEEEEeCCCCcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       151 ~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      .+.++.+++.. .++.|+.+|..+|  +.. +....    ......+..  +++.+++...+         ..|+.+|.+
T Consensus        62 ~v~~~~v~v~~-~~g~v~a~d~~tG--~~~W~~~~~----~~~~~~p~v--~~~~v~v~~~~---------g~l~ald~~  123 (377)
T TIGR03300        62 AVAGGKVYAAD-ADGTVVALDAETG--KRLWRVDLD----ERLSGGVGA--DGGLVFVGTEK---------GEVIALDAE  123 (377)
T ss_pred             EEECCEEEEEC-CCCeEEEEEccCC--cEeeeecCC----CCcccceEE--cCCEEEEEcCC---------CEEEEEECC
Confidence            33455555543 5567999998877  321 11111    111223333  45556554332         579999998


Q ss_pred             CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc-cccCcCcee
Q 006979          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI-VESPTEPKW  308 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w  308 (623)
                      +|+...  ....+......|..  ++.++++.. .       ...|+.+|.+++.   ..+......+.. ......|..
T Consensus       124 tG~~~W--~~~~~~~~~~~p~v--~~~~v~v~~-~-------~g~l~a~d~~tG~---~~W~~~~~~~~~~~~~~~sp~~  188 (377)
T TIGR03300       124 DGKELW--RAKLSSEVLSPPLV--ANGLVVVRT-N-------DGRLTALDAATGE---RLWTYSRVTPALTLRGSASPVI  188 (377)
T ss_pred             CCcEee--eeccCceeecCCEE--ECCEEEEEC-C-------CCeEEEEEcCCCc---eeeEEccCCCceeecCCCCCEE
Confidence            887311  11222233344544  344555442 1       3459999987763   222222111000 001123333


Q ss_pred             CCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccc--cccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS--RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~--~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                      . ++.+++ ... .+  .++.+|+.+|+..--.......+  ..........-..+    .++.+|+... +|  .|+.+
T Consensus       189 ~-~~~v~~-~~~-~g--~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~----~~~~vy~~~~-~g--~l~a~  256 (377)
T TIGR03300       189 A-DGGVLV-GFA-GG--KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV----DGGQVYAVSY-QG--RVAAL  256 (377)
T ss_pred             E-CCEEEE-ECC-CC--EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE----ECCEEEEEEc-CC--EEEEE
Confidence            2 343443 332 23  68889988876321111000000  00000000000111    4556666543 33  58889


Q ss_pred             eCCCCceeecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          387 DDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       387 d~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      |.++|+..--.. ..........++++|+...    ...++.++.++|+
T Consensus       257 d~~tG~~~W~~~-~~~~~~p~~~~~~vyv~~~----~G~l~~~d~~tG~  300 (377)
T TIGR03300       257 DLRSGRVLWKRD-ASSYQGPAVDDNRLYVTDA----DGVVVALDRRSGS  300 (377)
T ss_pred             ECCCCcEEEeec-cCCccCceEeCCEEEEECC----CCeEEEEECCCCc
Confidence            988876532111 1111122345777776542    3579999998886

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.48  E-value=0.17  Score=49.74  Aligned_cols=119  Identities=7%  Similarity=-0.087  Sum_probs=68.1

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      ..-..|++-|.+|+.-..+         +.++++|..+-..  .+.|...-.-+...+||+||++|.-.+.|        
T Consensus        26 a~~~~Fs~~G~~lAvGc~n---------G~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D--------   86 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCAN---------GRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRD--------   86 (405)
T ss_pred             cceEEeccCcceeeeeccC---------CcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCC--------
Confidence            3446799999988876654         6688999988651  23333333445678899999998755433        


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~  341 (623)
                      ..+-+.|+..+..+  .++....      -+....|.|-.+ ...+..- +....  .++...++.+.|.
T Consensus        87 ~si~lwDl~~gs~l--~rirf~s------pv~~~q~hp~k~n~~va~~~-~~sp~--vi~~s~~~h~~Lp  145 (405)
T KOG1273|consen   87 WSIKLWDLLKGSPL--KRIRFDS------PVWGAQWHPRKRNKCVATIM-EESPV--VIDFSDPKHSVLP  145 (405)
T ss_pred             ceeEEEeccCCCce--eEEEccC------ccceeeeccccCCeEEEEEe-cCCcE--EEEecCCceeecc
Confidence            23677788776432  2222221      234566777554 4444433 22223  3344344444443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.47  E-value=0.035  Score=60.52  Aligned_cols=152  Identities=11%  Similarity=0.019  Sum_probs=93.1

Q ss_pred             ceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCE-EEEEeCCCCcEEEEe
Q 006979           93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYKDQRLYKHS  171 (623)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~-l~f~~~~~~~l~~~d  171 (623)
                      .++++| ..+||...  ..+....||..+..   .+.+++....        ....++.+.++. .++....|..+.+||
T Consensus       498 dV~F~P-~GyYFata--s~D~tArLWs~d~~---~PlRifaghl--------sDV~cv~FHPNs~Y~aTGSsD~tVRlWD  563 (707)
T KOG0263|consen  498 DVQFAP-RGYYFATA--SHDQTARLWSTDHN---KPLRIFAGHL--------SDVDCVSFHPNSNYVATGSSDRTVRLWD  563 (707)
T ss_pred             eEEecC-CceEEEec--CCCceeeeeecccC---Cchhhhcccc--------cccceEEECCcccccccCCCCceEEEEE
Confidence            355564 34666654  22466677766543   4444443221        124556666663 333444455688888


Q ss_pred             CCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceee
Q 006979          172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRM  251 (623)
Q Consensus       172 ~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~w  251 (623)
                      ..+| ..+|..+..    .......++||+|++|+-..++         +.|.++|+.+|..  +.++.+..+.....+|
T Consensus       564 v~~G-~~VRiF~GH----~~~V~al~~Sp~Gr~LaSg~ed---------~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsF  627 (707)
T KOG0263|consen  564 VSTG-NSVRIFTGH----KGPVTALAFSPCGRYLASGDED---------GLIKIWDLANGSL--VKQLKGHTGTIYSLSF  627 (707)
T ss_pred             cCCC-cEEEEecCC----CCceEEEEEcCCCceEeecccC---------CcEEEEEcCCCcc--hhhhhcccCceeEEEE
Confidence            8877 445555543    3456778999999998775554         5688889998863  3444444556677899


Q ss_pred             CCCCCEEEEEEecCCCCCCCceEEEEEEecC
Q 006979          252 DPRGERMAWIEWHHPNMPWDKAELWVGYISE  282 (623)
Q Consensus       252 SPDG~~la~~~~~~~~~p~~~~~L~v~d~~~  282 (623)
                      |.||.-|+.-..|        +.|.+.|+..
T Consensus       628 S~dg~vLasgg~D--------nsV~lWD~~~  650 (707)
T KOG0263|consen  628 SRDGNVLASGGAD--------NSVRLWDLTK  650 (707)
T ss_pred             ecCCCEEEecCCC--------CeEEEEEchh
Confidence            9999977755433        2355557653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.42  E-value=0.031  Score=61.27  Aligned_cols=90  Identities=8%  Similarity=0.085  Sum_probs=60.2

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      ..|.++|..+.++  +|.+-+..+-.+...||||||||+-.+.|.        .|.++|+.++..+.-  +..+      
T Consensus       556 f~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasmD~--------tIr~wDlpt~~lID~--~~vd------  617 (910)
T KOG1539|consen  556 FSIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASMDS--------TIRTWDLPTGTLIDG--LLVD------  617 (910)
T ss_pred             eeEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeecCC--------cEEEEeccCcceeee--EecC------
Confidence            6799999988763  444544455667789999999999887554        388999988743221  1122      


Q ss_pred             ccCcCceeCCCCcEEEEEeCCCCeeeEEEE
Q 006979          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKW  330 (623)
Q Consensus       301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~  330 (623)
                      .-.....++|+|.++.+...  +...||.+
T Consensus       618 ~~~~sls~SPngD~LAT~Hv--d~~gIylW  645 (910)
T KOG1539|consen  618 SPCTSLSFSPNGDFLATVHV--DQNGIYLW  645 (910)
T ss_pred             CcceeeEECCCCCEEEEEEe--cCceEEEE
Confidence            12357889999996666655  33445544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=96.38  E-value=0.072  Score=55.24  Aligned_cols=143  Identities=15%  Similarity=0.063  Sum_probs=84.9

Q ss_pred             EEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          151 RIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       151 ~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      +.++| .|.|+-..+|.|.++|+... ..++++...    ..-..-..+|+||..|+----         .+.+.-+|+.
T Consensus       516 a~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGh----tDGascIdis~dGtklWTGGl---------DntvRcWDlr  581 (705)
T KOG0639|consen  516 AISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGH----TDGASCIDISKDGTKLWTGGL---------DNTVRCWDLR  581 (705)
T ss_pred             hcCCccceeeeeccCCcEEEEEcccc-eeeecccCC----CCCceeEEecCCCceeecCCC---------ccceeehhhh
Confidence            34566 89999999999999999854 345666543    112234568899987754221         1567788887


Q ss_pred             CCCcccceecccCCCc---ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          230 GQNIQEPKVLVSGSDF---YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~---~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                      .+.     ++. ..+|   +.....+|.|.||+.- +.       .+.+++....+.    .+-.+.-.+    --+-..
T Consensus       582 egr-----qlq-qhdF~SQIfSLg~cP~~dWlavG-Me-------ns~vevlh~skp----~kyqlhlhe----ScVLSl  639 (705)
T KOG0639|consen  582 EGR-----QLQ-QHDFSSQIFSLGYCPTGDWLAVG-ME-------NSNVEVLHTSKP----EKYQLHLHE----SCVLSL  639 (705)
T ss_pred             hhh-----hhh-hhhhhhhheecccCCCccceeee-cc-------cCcEEEEecCCc----cceeecccc----cEEEEE
Confidence            764     222 1233   2234579999999843 22       334677665544    333333333    334567


Q ss_pred             eeCCCCcEEEEEeCCCCeeeEEEE
Q 006979          307 KWSSKGELFFVTDRKNGFWNLHKW  330 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~g~~~L~~~  330 (623)
                      .|++=|+.+..... ++.-+.|+.
T Consensus       640 KFa~cGkwfvStGk-DnlLnawrt  662 (705)
T KOG0639|consen  640 KFAYCGKWFVSTGK-DNLLNAWRT  662 (705)
T ss_pred             EecccCceeeecCc-hhhhhhccC
Confidence            88888864433332 444555554

>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.36  E-value=0.0079  Score=53.55  Aligned_cols=55  Identities=15%  Similarity=0.163  Sum_probs=46.1

Q ss_pred             HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhhh
Q 006979          560 SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       560 ~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~~  616 (623)
                      +--+|++++-.  |.+..+.|.|+|||.++... +||++|..+|+.+|+.|..++...
T Consensus        89 AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~  144 (227)
T COG4947          89 AYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGG  144 (227)
T ss_pred             HHHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccc
Confidence            34457777632  57788899999999999998 999999999999999999887553

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.35  E-value=0.016  Score=59.58  Aligned_cols=170  Identities=14%  Similarity=0.191  Sum_probs=96.2

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++++...++.|..+|..++  +   +...++..-....+..|-|+|++.+-..++.         .+.+.+-..+-   
T Consensus       313 n~fl~G~sd~ki~~wDiRs~--k---vvqeYd~hLg~i~~i~F~~~g~rFissSDdk---------s~riWe~~~~v---  375 (503)
T KOG0282|consen  313 NIFLVGGSDKKIRQWDIRSG--K---VVQEYDRHLGAILDITFVDEGRRFISSSDDK---------SVRIWENRIPV---  375 (503)
T ss_pred             cEEEEecCCCcEEEEeccch--H---HHHHHHhhhhheeeeEEccCCceEeeeccCc---------cEEEEEcCCCc---
Confidence            67778778888999998876  2   2222211123466788889999887766543         34455554443   


Q ss_pred             ceecccCCCcccce--eeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          236 PKVLVSGSDFYAFP--RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       236 ~~~l~~~~~~~~~p--~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      +..+.....-.+.|  ..+|.|++++-.+.+        ..|+++.+...-....++.+.+..-.  ++..+..+||||+
T Consensus       376 ~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d--------N~i~ifs~~~~~r~nkkK~feGh~va--Gys~~v~fSpDG~  445 (503)
T KOG0282|consen  376 PIKNIADPEMHTMPCLTLHPNGKWFAAQSMD--------NYIAIFSTVPPFRLNKKKRFEGHSVA--GYSCQVDFSPDGR  445 (503)
T ss_pred             cchhhcchhhccCcceecCCCCCeehhhccC--------ceEEEEecccccccCHhhhhcceecc--CceeeEEEcCCCC
Confidence            22222222233334  489999987755432        24666654433222234445554322  5667899999998


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeE-EEEeeccccccccccccc
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFG  355 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~  355 (623)
                      .++..+. .|  .++.+|-.+-++ ..+...+..+.+..|.+.
T Consensus       446 ~l~SGds-dG--~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~  485 (503)
T KOG0282|consen  446 TLCSGDS-DG--KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV  485 (503)
T ss_pred             eEEeecC-Cc--cEEEeechhhhhhhccccCCcceEEEEecCC
Confidence            6665554 45  455555544332 233333344555677763

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.34  E-value=0.15  Score=53.60  Aligned_cols=137  Identities=12%  Similarity=0.093  Sum_probs=73.4

Q ss_pred             ceeeCCCCCEEEEEEeccCCCC---CCceeEEEEEEcCC--CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979          195 DGIFDPRFNRYVTVREDRRQDA---LNSTTEIVAIALNG--QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP  269 (623)
Q Consensus       195 d~~~sPdG~~l~~v~~~~~~~~---~~~~~~L~~idl~~--g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p  269 (623)
                      ..+|+++|+.++..+.+.....   .....+|++++-.+  |.....+++..+.....+..+.+||  |++.  +.    
T Consensus        18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~--~~----   89 (367)
T TIGR02604        18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA--TP----   89 (367)
T ss_pred             eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe--CC----
Confidence            3678899975444332211110   01123677776532  3322235566666666778899998  5544  22    


Q ss_pred             CCceEEEEE-EecCCCcee--eeEEEcCCCCC---ccccCcCceeCCCCcEEEEEeCCC----------------CeeeE
Q 006979          270 WDKAELWVG-YISENGDVY--KRVCVAGFDPT---IVESPTEPKWSSKGELFFVTDRKN----------------GFWNL  327 (623)
Q Consensus       270 ~~~~~L~v~-d~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~ws~DG~l~~~~~~~~----------------g~~~L  327 (623)
                         .+|+.+ +.++.+...  ...++.+....   .......+.|.|||+||+......                ....+
T Consensus        90 ---~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        90 ---PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             ---CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence               247766 444332211  22333333211   013466899999998887543200                01368


Q ss_pred             EEEecCCCeEEEEee
Q 006979          328 HKWIESNNEVLAIYS  342 (623)
Q Consensus       328 ~~~d~~~~~~~~l~~  342 (623)
                      +++++++++.+.+..
T Consensus       167 ~r~~pdg~~~e~~a~  181 (367)
T TIGR02604       167 FRYNPDGGKLRVVAH  181 (367)
T ss_pred             EEEecCCCeEEEEec
Confidence            999998887766543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.34  E-value=0.54  Score=46.48  Aligned_cols=148  Identities=11%  Similarity=0.085  Sum_probs=79.4

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCC--eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc-CCCCc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPL--VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL-NGQNI  233 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~--~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl-~~g~~  233 (623)
                      ++.+..+++-|.++|.-+|  +.+.-=..++...  .-.-...|||||.+|++--          .+.|.++|+ ..|..
T Consensus       125 l~a~ssr~~PIh~wdaftG--~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy----------krcirvFdt~RpGr~  192 (406)
T KOG2919|consen  125 LFAVSSRDQPIHLWDAFTG--KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY----------KRCIRVFDTSRPGRD  192 (406)
T ss_pred             eeeeccccCceeeeecccc--ccccchhhhhhHHhhhhheeEEecCCCCeEeecc----------cceEEEeeccCCCCC
Confidence            4444445566999998777  3221111111000  0112467999999998742          256888887 33432


Q ss_pred             cc-ceecccC----CCcccceeeCCCC-CEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979          234 QE-PKVLVSG----SDFYAFPRMDPRG-ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (623)
Q Consensus       234 ~~-~~~l~~~----~~~~~~p~wSPDG-~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
                      -. ...++.+    ....+..++||-. +.+++-+.-.        .+-++..++.+   .-.++-+..    +.+....
T Consensus       193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q--------~~giy~~~~~~---pl~llggh~----gGvThL~  257 (406)
T KOG2919|consen  193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ--------RVGIYNDDGRR---PLQLLGGHG----GGVTHLQ  257 (406)
T ss_pred             CcchhhhhcccccccceeeeeeccCCCCcceeeecccc--------eeeeEecCCCC---ceeeecccC----CCeeeEE
Confidence            11 1223332    2345566789954 4666654321        24444444442   333444544    7899999


Q ss_pred             eCCCCcEEEEEeCCCCeeeEEEEecC
Q 006979          308 WSSKGELFFVTDRKNGFWNLHKWIES  333 (623)
Q Consensus       308 ws~DG~l~~~~~~~~g~~~L~~~d~~  333 (623)
                      |.+||.-+|...+...  .|..+|+.
T Consensus       258 ~~edGn~lfsGaRk~d--kIl~WDiR  281 (406)
T KOG2919|consen  258 WCEDGNKLFSGARKDD--KILCWDIR  281 (406)
T ss_pred             eccCcCeecccccCCC--eEEEEeeh
Confidence            9999995555544222  45555553

>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.32  E-value=0.027  Score=60.20  Aligned_cols=141  Identities=18%  Similarity=0.185  Sum_probs=81.6

Q ss_pred             EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-----------------CCHHhHHHHcCceE
Q 006979          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-----------------LNLSIQYWTSRGWA  526 (623)
Q Consensus       464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-----------------~~~~~~~~a~~G~~  526 (623)
                      +.+... .+..+..|++...+.      .+..|+||++.|||+......                 +.....-|.+. ..
T Consensus        16 l~~~~~-~~~~lfyw~~~s~~~------~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an   87 (415)
T PF00450_consen   16 LPVNDN-ENAHLFYWFFESRND------PEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-AN   87 (415)
T ss_dssp             EEECTT-TTEEEEEEEEE-SSG------GCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SE
T ss_pred             EecCCC-CCcEEEEEEEEeCCC------CCCccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cc
Confidence            444443 577888888877651      466799999999997544210                 11233345555 68


Q ss_pred             EEEECCCCCCCCchhHHHhhccCCc-cchHHHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh-----cC-----
Q 006979          527 FVDVNYGGSTGYGREFRERLLGRWG-IVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL-----AF-----  594 (623)
Q Consensus       527 v~~~d~rGs~~~g~~~~~~~~~~~g-~~~~~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-----~~-----  594 (623)
                      +|.+|.+-++||...-.... ..+. ....+|+..+++ |+.+.+......+.|.|-||||..+-.++     ..     
T Consensus        88 ~l~iD~PvGtGfS~~~~~~~-~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~  166 (415)
T PF00450_consen   88 LLFIDQPVGTGFSYGNDPSD-YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQ  166 (415)
T ss_dssp             EEEE--STTSTT-EESSGGG-GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--S
T ss_pred             eEEEeecCceEEeecccccc-ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccc
Confidence            88899775555544321111 1112 223456665555 45556666667999999999998765444     12     


Q ss_pred             -CCceeEEEecccCCCHHHh
Q 006979          595 -RDTFKAGASLYGVSIPVII  613 (623)
Q Consensus       595 -~~~f~a~v~~~g~~d~~~~  613 (623)
                       .=-+++++...|.+|....
T Consensus       167 ~~inLkGi~IGng~~dp~~~  186 (415)
T PF00450_consen  167 PKINLKGIAIGNGWIDPRIQ  186 (415)
T ss_dssp             TTSEEEEEEEESE-SBHHHH
T ss_pred             cccccccceecCcccccccc
Confidence             2348999999999998643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.30  E-value=0.8  Score=45.15  Aligned_cols=147  Identities=12%  Similarity=0.033  Sum_probs=80.3

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      ++-+.-.+|++..+|+.|- .-.+.|+..    -......+||+||++|+-.+.|         +.+-..|+..|..  .
T Consensus        37 ~lAvGc~nG~vvI~D~~T~-~iar~lsaH----~~pi~sl~WS~dgr~LltsS~D---------~si~lwDl~~gs~--l  100 (405)
T KOG1273|consen   37 YLAVGCANGRVVIYDFDTF-RIARMLSAH----VRPITSLCWSRDGRKLLTSSRD---------WSIKLWDLLKGSP--L  100 (405)
T ss_pred             eeeeeccCCcEEEEEcccc-chhhhhhcc----ccceeEEEecCCCCEeeeecCC---------ceeEEEeccCCCc--e
Confidence            3444556888999999874 233445432    1235678999999999876654         5677888877752  3


Q ss_pred             eecccCCCcccceeeCCCCCEEEEEE-ecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC-CccccCcCceeCCCCcE
Q 006979          237 KVLVSGSDFYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGEL  314 (623)
Q Consensus       237 ~~l~~~~~~~~~p~wSPDG~~la~~~-~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ws~DG~l  314 (623)
                      .++.... -+....|.|-.+..+.+. .+..        -+++++...    ...+++..++ +-....+...+.+-|+.
T Consensus       101 ~rirf~s-pv~~~q~hp~k~n~~va~~~~~s--------p~vi~~s~~----~h~~Lp~d~d~dln~sas~~~fdr~g~y  167 (405)
T KOG1273|consen  101 KRIRFDS-PVWGAQWHPRKRNKCVATIMEES--------PVVIDFSDP----KHSVLPKDDDGDLNSSASHGVFDRRGKY  167 (405)
T ss_pred             eEEEccC-ccceeeeccccCCeEEEEEecCC--------cEEEEecCC----ceeeccCCCccccccccccccccCCCCE
Confidence            3333221 122345777655444443 2322        355666653    3444443321 11122233347788885


Q ss_pred             EEEEeCCCCeeeEEEEecCCC
Q 006979          315 FFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       315 ~~~~~~~~g~~~L~~~d~~~~  335 (623)
                      ++.... .|+  |..++.++-
T Consensus       168 IitGts-KGk--llv~~a~t~  185 (405)
T KOG1273|consen  168 IITGTS-KGK--LLVYDAETL  185 (405)
T ss_pred             EEEecC-cce--EEEEecchh
Confidence            555544 454  445555554

>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []

Probab=96.30  E-value=0.013  Score=56.94  Aligned_cols=95  Identities=11%  Similarity=-0.008  Sum_probs=60.0

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHH-HHHHHhCCCCCCCc
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEKR  575 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~-~~~l~~~~~~d~~r  575 (623)
                      .|+++|++  +.....|...++.+...++.|..++++|-....          .....++++.+. ++.+.+..  ....
T Consensus         2 ~lf~~p~~--gG~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~----------~~~~si~~la~~y~~~I~~~~--~~gp   67 (229)
T PF00975_consen    2 PLFCFPPA--GGSASSYRPLARALPDDVIGVYGIEYPGRGDDE----------PPPDSIEELASRYAEAIRARQ--PEGP   67 (229)
T ss_dssp             EEEEESST--TCSGGGGHHHHHHHTTTEEEEEEECSTTSCTTS----------HEESSHHHHHHHHHHHHHHHT--SSSS
T ss_pred             eEEEEcCC--ccCHHHHHHHHHhCCCCeEEEEEEecCCCCCCC----------CCCCCHHHHHHHHHHHhhhhC--CCCC
Confidence            46778887  335557778888887777999999999854111          112234443322 33333321  1238


Q ss_pred             eEEEEcChHHHHHHHHhc----CCCceeEEEecc
Q 006979          576 LCITGGSAGGYTTLAALA----FRDTFKAGASLY  605 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~~----~~~~f~a~v~~~  605 (623)
                      +.++|||+||.++..+++    .......++.+.
T Consensus        68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD  101 (229)
T PF00975_consen   68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILID  101 (229)
T ss_dssp             EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred             eeehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence            999999999999998872    234466666665

Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....

>KOG3967 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.031  Score=51.66  Aligned_cols=108  Identities=20%  Similarity=0.182  Sum_probs=64.4

Q ss_pred             CCEEEEecCCCCCccc---------CcC-----CHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHH
Q 006979          495 PPLLVKSHGGPTSEAR---------GIL-----NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS  560 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~---------~~~-----~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~  560 (623)
                      .-++|++||.+-....         ..+     -+.+..-.+.||.|++.|.--...+-..+++..  .+-...++.+.-
T Consensus       101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~--kyirt~veh~~y  178 (297)
T KOG3967|consen  101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQ--KYIRTPVEHAKY  178 (297)
T ss_pred             cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcc--hhccchHHHHHH
Confidence            3489999997422111         111     145666678899999998652222111111111  122244666666


Q ss_pred             HHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC---ceeEEEeccc
Q 006979          561 CATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD---TFKAGASLYG  606 (623)
Q Consensus       561 ~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~---~f~a~v~~~g  606 (623)
                      +..+++..  ..++.|+++-||+||+.++-++ ++++   +|+-+...++
T Consensus       179 vw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~  226 (297)
T KOG3967|consen  179 VWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSA  226 (297)
T ss_pred             HHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccc
Confidence            66666654  4468999999999999999999 6653   4444443333

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=96.28  E-value=0.19  Score=50.79  Aligned_cols=208  Identities=9%  Similarity=0.029  Sum_probs=110.4

Q ss_pred             cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEE
Q 006979           91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK  169 (623)
Q Consensus        91 ~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~  169 (623)
                      .-.+.|+| .+.+.-.   ..|+-..-+|.....  +-.+.++..-.........-|.-.|-+....++++...++.+.+
T Consensus        84 vLDi~w~PfnD~vIAS---gSeD~~v~vW~IPe~--~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   84 VLDIDWCPFNDCVIAS---GSEDTKVMVWQIPEN--GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             ccccccCccCCceeec---CCCCceEEEEECCCc--ccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence            34678888 6655322   234566667766543  44444441110000000011222333333467888888888999


Q ss_pred             EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC--Cccc
Q 006979          170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--DFYA  247 (623)
Q Consensus       170 ~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~--~~~~  247 (623)
                      +++.+| .....|..     +.......|+-||.+++-++.|         -.|.++|...++   +..-..+.  ....
T Consensus       159 Wnv~tg-eali~l~h-----pd~i~S~sfn~dGs~l~TtckD---------KkvRv~dpr~~~---~v~e~~~heG~k~~  220 (472)
T KOG0303|consen  159 WNVGTG-EALITLDH-----PDMVYSMSFNRDGSLLCTTCKD---------KKVRVIDPRRGT---VVSEGVAHEGAKPA  220 (472)
T ss_pred             EeccCC-ceeeecCC-----CCeEEEEEeccCCceeeeeccc---------ceeEEEcCCCCc---EeeecccccCCCcc
Confidence            999988 23334443     3556678899999998887765         458889998886   22111111  1122


Q ss_pred             ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeE
Q 006979          248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL  327 (623)
Q Consensus       248 ~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L  327 (623)
                      ...|--||+ |+-+...  .|  ...++-+.|.+.-.   +...+...+..  -.+--|-|.+|.+++|+...+++.-+-
T Consensus       221 Raifl~~g~-i~tTGfs--r~--seRq~aLwdp~nl~---eP~~~~elDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRY  290 (472)
T KOG0303|consen  221 RAIFLASGK-IFTTGFS--RM--SERQIALWDPNNLE---EPIALQELDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRY  290 (472)
T ss_pred             eeEEeccCc-eeeeccc--cc--cccceeccCccccc---CcceeEEeccC--CceEEeeecCCCCEEEEEecCCcceEE
Confidence            334778887 5433322  22  23344444433221   11122211211  345678899998877777663444444


Q ss_pred             EEEe
Q 006979          328 HKWI  331 (623)
Q Consensus       328 ~~~d  331 (623)
                      |.+.
T Consensus       291 yEit  294 (472)
T KOG0303|consen  291 FEIT  294 (472)
T ss_pred             EEec
Confidence            4443

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=96.16  E-value=0.063  Score=54.58  Aligned_cols=146  Identities=16%  Similarity=0.087  Sum_probs=93.7

Q ss_pred             eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCC-CCCeeecceeeCCCCCEEEEEEeccCC---------CCCC
Q 006979          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG-EPLVSYADGIFDPRFNRYVTVREDRRQ---------DALN  218 (623)
Q Consensus       149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~-~~~~~~~d~~~sPdG~~l~~v~~~~~~---------~~~~  218 (623)
                      +|....+.+++.+.--| |+.++..++  ..+.++...+ .+....++..++|+| -|+|+.....-         -...
T Consensus       121 ~f~~~ggdL~VaDAYlG-L~~V~p~g~--~a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~rd~~~a~l~g~  196 (376)
T KOG1520|consen  121 RFDKKGGDLYVADAYLG-LLKVGPEGG--LAELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDRRDFVFAALEGD  196 (376)
T ss_pred             EeccCCCeEEEEeccee-eEEECCCCC--cceeccccccCeeeeecCceeEcCCC-eEEEeccccccchhheEEeeecCC
Confidence            34444445555543333 999999877  6777777633 333455678899966 45555332211         1234


Q ss_pred             ceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcC-CCC
Q 006979          219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDP  297 (623)
Q Consensus       219 ~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~-~~~  297 (623)
                      +.++|+++|..+..   .++|.++--|.++.+.|||+..+.|.+..       ..+|..+=+.+.. +....++.. .+ 
T Consensus       197 ~~GRl~~YD~~tK~---~~VLld~L~F~NGlaLS~d~sfvl~~Et~-------~~ri~rywi~g~k-~gt~EvFa~~LP-  264 (376)
T KOG1520|consen  197 PTGRLFRYDPSTKV---TKVLLDGLYFPNGLALSPDGSFVLVAETT-------TARIKRYWIKGPK-AGTSEVFAEGLP-  264 (376)
T ss_pred             CccceEEecCcccc---hhhhhhcccccccccCCCCCCEEEEEeec-------cceeeeeEecCCc-cCchhhHhhcCC-
Confidence            56889999998887   77888888899999999999999988743       2345555554431 112344444 44 


Q ss_pred             CccccCcCceeCCCCc
Q 006979          298 TIVESPTEPKWSSKGE  313 (623)
Q Consensus       298 ~~~~~~~~~~ws~DG~  313 (623)
                         +++..++-+++|.
T Consensus       265 ---G~PDNIR~~~~G~  277 (376)
T KOG1520|consen  265 ---GYPDNIRRDSTGH  277 (376)
T ss_pred             ---CCCcceeECCCCC
Confidence               5677888888885

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=96.16  E-value=0.084  Score=53.43  Aligned_cols=187  Identities=11%  Similarity=-0.019  Sum_probs=113.1

Q ss_pred             CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCc
Q 006979           88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR  166 (623)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~  166 (623)
                      ...++.+++||.+..|-..+   |+|+..||-....  .+.+.|..         |.+...+..|.+. .++++...++-
T Consensus       180 ~eaIRdlafSpnDskF~t~S---dDg~ikiWdf~~~--kee~vL~G---------HgwdVksvdWHP~kgLiasgskDnl  245 (464)
T KOG0284|consen  180 AEAIRDLAFSPNDSKFLTCS---DDGTIKIWDFRMP--KEERVLRG---------HGWDVKSVDWHPTKGLIASGSKDNL  245 (464)
T ss_pred             hhhhheeccCCCCceeEEec---CCCeEEEEeccCC--chhheecc---------CCCCcceeccCCccceeEEccCCce
Confidence            35788999998555554443   3689888866544  23344432         3444567777766 67888777876


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcc
Q 006979          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY  246 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~  246 (623)
                      +-++|..+| ...-.|...    ..-+....|+|+|++|+-..+|         ..+-++|+.+-+  ++..+-...+++
T Consensus       246 VKlWDprSg-~cl~tlh~H----KntVl~~~f~~n~N~Llt~skD---------~~~kv~DiR~mk--El~~~r~Hkkdv  309 (464)
T KOG0284|consen  246 VKLWDPRSG-SCLATLHGH----KNTVLAVKFNPNGNWLLTGSKD---------QSCKVFDIRTMK--ELFTYRGHKKDV  309 (464)
T ss_pred             eEeecCCCc-chhhhhhhc----cceEEEEEEcCCCCeeEEccCC---------ceEEEEehhHhH--HHHHhhcchhhh
Confidence            778899877 222222221    3446678899999999988776         457888887432  144444455677


Q ss_pred             cceeeCCCCCEEEEEE-ecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEE
Q 006979          247 AFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT  318 (623)
Q Consensus       247 ~~p~wSPDG~~la~~~-~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~  318 (623)
                      ....|+|=-.-|+-.. +|.+        |+...+....+  ...+-...+    ..+-...|.|=|.|+...
T Consensus       310 ~~~~WhP~~~~lftsgg~Dgs--------vvh~~v~~~~p--~~~i~~AHd----~~iwsl~~hPlGhil~tg  368 (464)
T KOG0284|consen  310 TSLTWHPLNESLFTSGGSDGS--------VVHWVVGLEEP--LGEIPPAHD----GEIWSLAYHPLGHILATG  368 (464)
T ss_pred             eeeccccccccceeeccCCCc--------eEEEecccccc--ccCCCcccc----cceeeeeccccceeEeec
Confidence            7888999776665443 2221        33333332211  111111222    567788899988655543

>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic

Probab=96.16  E-value=0.032  Score=51.52  Aligned_cols=90  Identities=11%  Similarity=0.046  Sum_probs=56.4

Q ss_pred             EEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceE
Q 006979          498 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC  577 (623)
Q Consensus       498 iv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~  577 (623)
                      |+++||...+....-+.+..+.+.+. +.|-.+|.-                  ..+.++-...++..+..  +| +.+.
T Consensus         1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~~------------------~P~~~~W~~~l~~~i~~--~~-~~~i   58 (171)
T PF06821_consen    1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDWD------------------NPDLDEWVQALDQAIDA--ID-EPTI   58 (171)
T ss_dssp             EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC--T------------------S--HHHHHHHHHHCCHC---T-TTEE
T ss_pred             CEEeCCCCCCCccHHHHHHHHhCCCC-eEEeccccC------------------CCCHHHHHHHHHHHHhh--cC-CCeE
Confidence            57789886555544455667777777 777777641                  11234444444443333  33 4699


Q ss_pred             EEEcChHHHHHHHHh-c-CCCceeEEEecccCCC
Q 006979          578 ITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVSI  609 (623)
Q Consensus       578 i~G~S~GG~~~~~~~-~-~~~~f~a~v~~~g~~d  609 (623)
                      ++|||.|..+++..+ . ....+++++.++|...
T Consensus        59 lVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~   92 (171)
T PF06821_consen   59 LVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDP   92 (171)
T ss_dssp             EEEETHHHHHHHHHHHHTCCSSEEEEEEES--SC
T ss_pred             EEEeCHHHHHHHHHHhhcccccccEEEEEcCCCc
Confidence            999999999999888 4 5779999999999854

The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.14  E-value=1.3  Score=46.43  Aligned_cols=192  Identities=12%  Similarity=0.067  Sum_probs=102.6

Q ss_pred             ceeeCCCCCEEEEEEeccC---C---CCCCceeEEEEEEcCCCCcccceecccCC--Cccc--ceeeCCCCCEEEEEEec
Q 006979          195 DGIFDPRFNRYVTVREDRR---Q---DALNSTTEIVAIALNGQNIQEPKVLVSGS--DFYA--FPRMDPRGERMAWIEWH  264 (623)
Q Consensus       195 d~~~sPdG~~l~~v~~~~~---~---~~~~~~~~L~~idl~~g~~~~~~~l~~~~--~~~~--~p~wSPDG~~la~~~~~  264 (623)
                      +..+||.|++|.--+....   +   .+.+..+.+++.|..+|.   +..-....  ....  ...||-|.+++|.+.  
T Consensus        76 ~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~---iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv--  150 (561)
T COG5354          76 YLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM---IVFSFNGISQPYLGWPVLKFSIDDKYVARVV--  150 (561)
T ss_pred             ecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce---eEeeccccCCcccccceeeeeecchhhhhhc--
Confidence            4558999998876544322   1   223344579999999986   22111111  0011  236899999988874  


Q ss_pred             CCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc---EEEEEeCCCC---eeeEEEEecCCCeEE
Q 006979          265 HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE---LFFVTDRKNG---FWNLHKWIESNNEVL  338 (623)
Q Consensus       265 ~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~---l~~~~~~~~g---~~~L~~~d~~~~~~~  338 (623)
                             ...|+++++...-.......+.  .    .++..+.|+|.|.   |.|..-...+   ...|+.+. .+..+.
T Consensus       151 -------~~sl~i~e~t~n~~~~p~~~lr--~----~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp-~~s~l~  216 (561)
T COG5354         151 -------GSSLYIHEITDNIEEHPFKNLR--P----VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP-KNSVLV  216 (561)
T ss_pred             -------cCeEEEEecCCccccCchhhcc--c----cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc-CCCeee
Confidence                   3348999873321101111111  1    4667889999753   4544433233   34566664 222222


Q ss_pred             EEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC--------CeEEEEEEeCCCCceeecccCCcceEee--ee
Q 006979          339 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--------GRSYLGILDDFGHSLSLLDIPFTDIDNI--TL  408 (623)
Q Consensus       339 ~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~--------g~~~L~~~d~~~~~~~~lt~~~~~v~~~--~~  408 (623)
                      ..+-.+.+-....|..            .|+.+++...++        |.+.||++++....++..-.-.+.|..+  .+
T Consensus       217 tk~lfk~~~~qLkW~~------------~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p  284 (561)
T COG5354         217 TKNLFKVSGVQLKWQV------------LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEP  284 (561)
T ss_pred             eeeeEeecccEEEEec------------CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecc
Confidence            2222222333456665            455555544322        4588999998755544321213334444  66


Q ss_pred             cCCEEEEEE
Q 006979          409 GNDCLFVEG  417 (623)
Q Consensus       409 ~~~~~~~~~  417 (623)
                      .++++.++.
T Consensus       285 ~S~~F~vi~  293 (561)
T COG5354         285 LSSRFAVIS  293 (561)
T ss_pred             cCCceeEEe
Confidence            777777765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=96.13  E-value=1.2  Score=45.84  Aligned_cols=197  Identities=11%  Similarity=0.113  Sum_probs=110.3

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCC--CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~--~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      ..+.+...++.+-++|+.......+.+.+.  ...-...+.|.+|+|-...+++...+.        +.|.+.|+.+++.
T Consensus       191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd--------~~L~iwD~R~~~~  262 (422)
T KOG0264|consen  191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD--------GKLMIWDTRSNTS  262 (422)
T ss_pred             eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC--------CeEEEEEcCCCCC
Confidence            455566667778888887531111122211  111134577899999888887766554        6799999985321


Q ss_pred             ccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          234 QEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       234 ~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                       +++..... ..-+...+|+|=+..|.-....       ...|.+.|+..-..  ....+.+.+    ..+.++.|||.-
T Consensus       263 -~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~-------D~tV~LwDlRnL~~--~lh~~e~H~----dev~~V~WSPh~  328 (422)
T KOG0264|consen  263 -KPSHSVKAHSAEVNCVAFNPFNEFILATGSA-------DKTVALWDLRNLNK--PLHTFEGHE----DEVFQVEWSPHN  328 (422)
T ss_pred             -CCcccccccCCceeEEEeCCCCCceEEeccC-------CCcEEEeechhccc--CceeccCCC----cceEEEEeCCCC
Confidence             12222222 2224457899988777655422       23488888865421  233344544    567899999998


Q ss_pred             c-EEEEEeCCCCeeeEEEEecCCCe----------EEEEeec---ccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979          313 E-LFFVTDRKNGFWNLHKWIESNNE----------VLAIYSL---DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (623)
Q Consensus       313 ~-l~~~~~~~~g~~~L~~~d~~~~~----------~~~l~~~---~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~  378 (623)
                      . ++..+.. ++.-++|-++-.+.+          .+.|...   ...+....|.+            ...+++.+..++
T Consensus       329 etvLASSg~-D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp------------~ePW~I~SvaeD  395 (422)
T KOG0264|consen  329 ETVLASSGT-DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP------------NEPWTIASVAED  395 (422)
T ss_pred             CceeEeccc-CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC------------CCCeEEEEecCC
Confidence            7 6655543 454444433221211          1112211   11122233332            677888888888


Q ss_pred             CeEEEEEEe
Q 006979          379 GRSYLGILD  387 (623)
Q Consensus       379 g~~~L~~~d  387 (623)
                      +.-+||...
T Consensus       396 N~LqIW~~s  404 (422)
T KOG0264|consen  396 NILQIWQMA  404 (422)
T ss_pred             ceEEEeecc
Confidence            888888664

>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like

Probab=96.12  E-value=0.018  Score=56.14  Aligned_cols=114  Identities=16%  Similarity=0.028  Sum_probs=70.4

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCce--EEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGW--AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~--~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~  571 (623)
                      ...++|++||.-.. ........+|.....||  .++.+..+..+. -..|...-  .-......++...++.|.+.  .
T Consensus        17 ~~~vlvfVHGyn~~-f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~-~~~Y~~d~--~~a~~s~~~l~~~L~~L~~~--~   90 (233)
T PF05990_consen   17 DKEVLVFVHGYNNS-FEDALRRAAQLAHDLGFPGVVILFSWPSDGS-LLGYFYDR--ESARFSGPALARFLRDLARA--P   90 (233)
T ss_pred             CCeEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCceEEEEEcCCCCC-hhhhhhhh--hhHHHHHHHHHHHHHHHHhc--c
Confidence            45699999998322 22233344555444444  788899886543 22222111  11112344555666666655  2


Q ss_pred             CCCceEEEEcChHHHHHHHHh-c----CC-----CceeEEEecccCCCHHHh
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-A----FR-----DTFKAGASLYGVSIPVII  613 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~----~~-----~~f~a~v~~~g~~d~~~~  613 (623)
                      ...+|-|++||||+++++.++ .    ..     ..|.-+|..+|=.|...+
T Consensus        91 ~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f  142 (233)
T PF05990_consen   91 GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVF  142 (233)
T ss_pred             CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHH
Confidence            357999999999999999887 2    11     267788888888877554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.09  E-value=0.19  Score=49.29  Aligned_cols=198  Identities=12%  Similarity=0.059  Sum_probs=101.8

Q ss_pred             eeecCCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCce
Q 006979          142 AQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST  220 (623)
Q Consensus       142 ~~~~g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~  220 (623)
                      .|..|..+..++.| .-+.+...|..+.+--+++| .-.+.....    ...+++..|++||++|+-.+.|         
T Consensus       304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGH----sSyvn~a~ft~dG~~iisaSsD---------  369 (508)
T KOG0275|consen  304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGH----SSYVNEATFTDDGHHIISASSD---------  369 (508)
T ss_pred             hhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCc----cccccceEEcCCCCeEEEecCC---------
Confidence            35667777777766 33344444555656666665 222222221    3456788899999999876654         


Q ss_pred             eEEEEEEcCCCCc-ccceecccCCCcccceeeCCC-CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979          221 TEIVAIALNGQNI-QEPKVLVSGSDFYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (623)
Q Consensus       221 ~~L~~idl~~g~~-~~~~~l~~~~~~~~~p~wSPD-G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~  298 (623)
                      ..+-+.+..+++- ..-+.+..+.. ++..-.-|- -..+...  ++      .+.+|++++.+.    ..+.+.....+
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~-vnsv~~~PKnpeh~iVC--Nr------sntv~imn~qGQ----vVrsfsSGkRE  436 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYP-VNSVILLPKNPEHFIVC--NR------SNTVYIMNMQGQ----VVRSFSSGKRE  436 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCccc-ceeEEEcCCCCceEEEE--cC------CCeEEEEeccce----EEeeeccCCcc
Confidence            3456666665531 00111111111 111111121 1233322  33      235999999865    33333332211


Q ss_pred             ccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEE-EeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979          299 IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (623)
Q Consensus       299 ~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~  376 (623)
                       .+..-....||.|. +|++..+    ..||.+...+|+.+. +.-.+.++-+..-.             ..+.++.++.
T Consensus       437 -gGdFi~~~lSpkGewiYcigED----~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH-------------PHqNllAsYs  498 (508)
T KOG0275|consen  437 -GGDFINAILSPKGEWIYCIGED----GVLYCFSVLSGKLERTLPVHEKDVIGLTHH-------------PHQNLLASYS  498 (508)
T ss_pred             -CCceEEEEecCCCcEEEEEccC----cEEEEEEeecCceeeeeecccccccccccC-------------cccchhhhhc
Confidence             13344567899999 6666544    468888877777544 43333333222211             2345666666


Q ss_pred             ECCeEEEE
Q 006979          377 QNGRSYLG  384 (623)
Q Consensus       377 ~~g~~~L~  384 (623)
                      ++|.-.||
T Consensus       499 EDgllKLW  506 (508)
T KOG0275|consen  499 EDGLLKLW  506 (508)
T ss_pred             ccchhhhc
Confidence            66655444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.08  E-value=2.3  Score=44.66  Aligned_cols=229  Identities=11%  Similarity=0.036  Sum_probs=106.5

Q ss_pred             EEeCCEEEEEeCCCCcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       151 ~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      ...++.+++ ...++.||.+|.++|  +.. +....    ......+..  .++.+++...+         ..|+.+|+.
T Consensus       102 ~v~~~~v~v-~~~~g~l~ald~~tG--~~~W~~~~~----~~~~~~p~v--~~~~v~v~~~~---------g~l~a~d~~  163 (377)
T TIGR03300       102 GADGGLVFV-GTEKGEVIALDAEDG--KELWRAKLS----SEVLSPPLV--ANGLVVVRTND---------GRLTALDAA  163 (377)
T ss_pred             EEcCCEEEE-EcCCCEEEEEECCCC--cEeeeeccC----ceeecCCEE--ECCEEEEECCC---------CeEEEEEcC
Confidence            344455554 445678999999877  321 11111    122233333  23445443221         569999998


Q ss_pred             CCCcccceecccCC---CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC-----c-c
Q 006979          230 GQNIQEPKVLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT-----I-V  300 (623)
Q Consensus       230 ~g~~~~~~~l~~~~---~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~-----~-~  300 (623)
                      +|+...........   .....|... ++ .+++.. .       ...|+.+|+.++..  ...........     . .
T Consensus       164 tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~~-~-------~g~v~ald~~tG~~--~W~~~~~~~~g~~~~~~~~  231 (377)
T TIGR03300       164 TGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVGF-A-------GGKLVALDLQTGQP--LWEQRVALPKGRTELERLV  231 (377)
T ss_pred             CCceeeEEccCCCceeecCCCCCEEE-CC-EEEEEC-C-------CCEEEEEEccCCCE--eeeeccccCCCCCchhhhh
Confidence            88731111111110   012334433 33 444332 2       23588888876632  11111110000     0 0


Q ss_pred             ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (623)
Q Consensus       301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~  380 (623)
                      .....|.. .++.+|+....  |  .|+.+|+.+|+..--..    ...  +    .....     .++.+|+..   ..
T Consensus       232 ~~~~~p~~-~~~~vy~~~~~--g--~l~a~d~~tG~~~W~~~----~~~--~----~~p~~-----~~~~vyv~~---~~  288 (377)
T TIGR03300       232 DVDGDPVV-DGGQVYAVSYQ--G--RVAALDLRSGRVLWKRD----ASS--Y----QGPAV-----DDNRLYVTD---AD  288 (377)
T ss_pred             ccCCccEE-ECCEEEEEEcC--C--EEEEEECCCCcEEEeec----cCC--c----cCceE-----eCCEEEEEC---CC
Confidence            01123333 24435544332  3  58889988876331111    110  1    11122     566777664   23


Q ss_pred             EEEEEEeCCCCcee-ec-ccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          381 SYLGILDDFGHSLS-LL-DIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       381 ~~L~~~d~~~~~~~-~l-t~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ..|+.+|..+|+.. .. ..+..........++.+++...    ...||.++.++|+.
T Consensus       289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~----~G~l~~~d~~tG~~  342 (377)
T TIGR03300       289 GVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDF----EGYLHWLSREDGSF  342 (377)
T ss_pred             CeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeC----CCEEEEEECCCCCE
Confidence            46888998877643 12 1111112222335666665432    24799999888864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like

Probab=96.03  E-value=0.014  Score=57.43  Aligned_cols=111  Identities=15%  Similarity=0.120  Sum_probs=64.7

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHH-cCce----EEEEECCCCCCCCchhHHHhh-------ccCCcc-----chHHH
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWT-SRGW----AFVDVNYGGSTGYGREFRERL-------LGRWGI-----VDVND  557 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a-~~G~----~v~~~d~rGs~~~g~~~~~~~-------~~~~g~-----~~~~D  557 (623)
                      .| .||+||.  +.....+..+.+.+. ++|.    .++.++.-|.-.+...+....       .-....     ....=
T Consensus        12 tP-TifihG~--~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~w   88 (255)
T PF06028_consen   12 TP-TIFIHGY--GGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKW   88 (255)
T ss_dssp             EE-EEEE--T--TGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHH
T ss_pred             Cc-EEEECCC--CCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHH
Confidence            35 4568998  555668888888887 6553    355566555322222222110       001111     12344


Q ss_pred             HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC---CC--ceeEEEecccCCCH
Q 006979          558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF---RD--TFKAGASLYGVSIP  610 (623)
Q Consensus       558 ~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~---~~--~f~a~v~~~g~~d~  610 (623)
                      +..++.+|.++.-+  +++-++||||||...+..+ .+   ++  .+.-.|.+++..|-
T Consensus        89 l~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng  145 (255)
T PF06028_consen   89 LKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNG  145 (255)
T ss_dssp             HHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTT
T ss_pred             HHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCc
Confidence            66888999988666  7999999999999999887 43   11  46777888776654

; PDB: 3LP5_A 3FLE_A 3DS8_A.

>PRK13614 lipoprotein LpqB; Provisional

Probab=96.02  E-value=0.8  Score=50.41  Aligned_cols=170  Identities=13%  Similarity=0.137  Sum_probs=92.8

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      ...+..|++|+.++++..+.        ..|++....+ .   .+.+..+.. ...|.|+++| +| |+..+..     .
T Consensus       345 ~~s~avS~~g~~~A~~~~~~--------~~l~~~~~g~-~---~~~~~~g~~-Lt~PS~d~~g-~v-Wtv~~g~-----~  404 (573)
T PRK13614        345 PASPAESPVSQTVAFLNGSR--------TTLYTVSPGQ-P---ARALTSGST-LTRPSFSPQD-WV-WTAGPGG-----N  404 (573)
T ss_pred             ccceeecCCCceEEEecCCC--------cEEEEecCCC-c---ceeeecCCC-ccCCcccCCC-CE-EEeeCCC-----C
Confidence            44578999999999874321        4688777643 3   455555554 5669999999 55 5543321     2


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCcc--ccCcCceeCCCCc-EEEEEeCCCCeeeEEE--E-ecCCCeEEEEeec---
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIV--ESPTEPKWSSKGE-LFFVTDRKNGFWNLHK--W-IESNNEVLAIYSL---  343 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~--~-d~~~~~~~~l~~~---  343 (623)
                      ..|.++.-++.+.........-.. +|.  ..+..++-|+||. ++++... .|..+|+.  + ....|..+.|+..   
T Consensus       405 ~~vv~~~~~g~~~~~~~~~~~v~~-~~l~g~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~G~P~~L~~~~~~  482 (573)
T PRK13614        405 GRIVAYRPTGVAEGAQAPTVTLTA-DWLAGRTVKELRVSREGVRALVISEQ-NGKSRVQVAGIVRNEDGTPRELTAPITL  482 (573)
T ss_pred             ceEEEEecCCCcccccccceeecc-cccCCCeeEEEEECCCccEEEEEEEe-CCccEEEEEEEEeCCCCCeEEccCceec
Confidence            355554433221101101110000 122  2378899999998 7766654 45544542  2 2345555666421   


Q ss_pred             --ccccccccccccCcceeEEeecCCCCEEEEEE-EECCeEEEEEEeCCCCceeecc
Q 006979          344 --DAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLSLLD  397 (623)
Q Consensus       344 --~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~-~~~g~~~L~~~d~~~~~~~~lt  397 (623)
                        ........|.             ++..|++.. ..++....+++.++++..+.+.
T Consensus       483 ~~~~~~~sl~W~-------------~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~  526 (573)
T PRK13614        483 AADSDADTGAWV-------------GDSTVVVTKASATSNVVPELLSVDAGQPQQLA  526 (573)
T ss_pred             ccCCCcceeEEc-------------CCCEEEEEeccCCCcceEEEEEeCCCCcccCC
Confidence              1223334454             455665554 3455666777877666655443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=96.02  E-value=1.6  Score=42.18  Aligned_cols=157  Identities=9%  Similarity=0.014  Sum_probs=90.4

Q ss_pred             CceEEEeCC---EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          147 GGAFRIFGD---TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       147 ~~~~~~s~d---~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      |.-|..+-|   ..+.....|+.+-++|+.+| +..-++..     ...+....|+++|+.++++.++.-..    ...+
T Consensus        53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tG-k~la~~k~-----~~~Vk~~~F~~~gn~~l~~tD~~mg~----~~~v  122 (327)
T KOG0643|consen   53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETG-KQLATWKT-----NSPVKRVDFSFGGNLILASTDKQMGY----TCFV  122 (327)
T ss_pred             ceEEEEEecCCcceeeeccccceeEEEEcCCC-cEEEEeec-----CCeeEEEeeccCCcEEEEEehhhcCc----ceEE
Confidence            344554422   45666667787889999988 22233332     12234456899999999988765322    2567


Q ss_pred             EEEEcCCCC----c-ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979          224 VAIALNGQN----I-QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (623)
Q Consensus       224 ~~idl~~g~----~-~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~  298 (623)
                      .++|+....    . +....+..........-|+|=|+.|..-  ++      ...|-.+|+..+.    ..+.....  
T Consensus       123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G--he------~G~is~~da~~g~----~~v~s~~~--  188 (327)
T KOG0643|consen  123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG--HE------DGSISIYDARTGK----ELVDSDEE--  188 (327)
T ss_pred             EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe--cC------CCcEEEEEcccCc----eeeechhh--
Confidence            777765321    0 1123333333444556799999988754  22      3348888988762    11211111  


Q ss_pred             ccccCcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979          299 IVESPTEPKWSSKGELFFVTDRKNGFWNLH  328 (623)
Q Consensus       299 ~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~  328 (623)
                      -...+.+.++++|...+..+.. +....|+
T Consensus       189 h~~~Ind~q~s~d~T~FiT~s~-Dttakl~  217 (327)
T KOG0643|consen  189 HSSKINDLQFSRDRTYFITGSK-DTTAKLV  217 (327)
T ss_pred             hccccccccccCCcceEEeccc-Cccceee
Confidence            1146788999999864444443 4444554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=95.97  E-value=1.4  Score=46.70  Aligned_cols=159  Identities=10%  Similarity=0.068  Sum_probs=89.0

Q ss_pred             ceeeCCCCCEEEEEEecc---CCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979          195 DGIFDPRFNRYVTVREDR---RQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (623)
Q Consensus       195 d~~~sPdG~~l~~v~~~~---~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~  271 (623)
                      ...|.+-|+-|+++....   .+......+.||.++.++...  ...|.... -+-...|||+|+..+.+-   .-||- 
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~--~V~L~k~G-PVhdv~W~~s~~EF~Vvy---GfMPA-  294 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV--SVPLLKEG-PVHDVTWSPSGREFAVVY---GFMPA-  294 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE--EEecCCCC-CceEEEECCCCCEEEEEE---ecccc-
Confidence            367999999888876432   222223458899999985431  23444222 233467999999988774   23432 


Q ss_pred             ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccc-ccccc
Q 006979          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRP  350 (623)
Q Consensus       272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~-~~~~~  350 (623)
                        .+-++|+.+.     .....+.     +--....|+|-|.+++++..++=...+-.+|..+  .+.|...++ +.+-.
T Consensus       295 --kvtifnlr~~-----~v~df~e-----gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~  360 (566)
T KOG2315|consen  295 --KVTIFNLRGK-----PVFDFPE-----GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVF  360 (566)
T ss_pred             --eEEEEcCCCC-----EeEeCCC-----CCccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccccCCceEE
Confidence              3666777654     2222222     2235788999999766665523234455566555  233432221 12223


Q ss_pred             cccccCcceeEEeecCCCCEEEEEEEE-----CCeEEEEEE
Q 006979          351 LWVFGINSYEIIQSHGEKNLIACSYRQ-----NGRSYLGIL  386 (623)
Q Consensus       351 ~w~~~~~~~~~l~~s~~~~~l~~~~~~-----~g~~~L~~~  386 (623)
                      .|.+            ||.+++.+...     +....||.+
T Consensus       361 eW~P------------dGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  361 EWSP------------DGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             EEcC------------CCcEEEEEeccccEEecCCeEEEEe
Confidence            4543            88877765431     333455555

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=95.96  E-value=0.83  Score=45.09  Aligned_cols=163  Identities=14%  Similarity=0.120  Sum_probs=79.2

Q ss_pred             EEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE-E
Q 006979          150 FRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI-A  227 (623)
Q Consensus       150 ~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i-d  227 (623)
                      +...++ ..+.+...+..|.++++++.  ....+...    ...-.+.+.||+|++|+...... +      -.+|-+ =
T Consensus       193 iGiA~~~k~imsas~dt~i~lw~lkGq--~L~~idtn----q~~n~~aavSP~GRFia~~gFTp-D------VkVwE~~f  259 (420)
T KOG2096|consen  193 IGIAGNAKYIMSASLDTKICLWDLKGQ--LLQSIDTN----QSSNYDAAVSPDGRFIAVSGFTP-D------VKVWEPIF  259 (420)
T ss_pred             EeecCCceEEEEecCCCcEEEEecCCc--eeeeeccc----cccccceeeCCCCcEEEEecCCC-C------ceEEEEEe
Confidence            333344 45555666778999999843  32333221    22334678999999988754322 1      122211 1


Q ss_pred             cCCCCcccceeccc--CC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCC-CC--Cccc
Q 006979          228 LNGQNIQEPKVLVS--GS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-DP--TIVE  301 (623)
Q Consensus       228 l~~g~~~~~~~l~~--~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~-~~--~~~~  301 (623)
                      ...|+.+++.++..  |. .-+...+||||.++++-++-|.      .-+||-.|+.=... ....++... .+  +--.
T Consensus       260 ~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG------~wriwdtdVrY~~~-qDpk~Lk~g~~pl~aag~  332 (420)
T KOG2096|consen  260 TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG------KWRIWDTDVRYEAG-QDPKILKEGSAPLHAAGS  332 (420)
T ss_pred             ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC------cEEEeeccceEecC-CCchHhhcCCcchhhcCC
Confidence            12344333333322  22 2244567999999998877443      23455444321100 011111111 00  0002


Q ss_pred             cCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       302 ~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                      ...+...+|.|+.+.++..    ..|-.+..++|+
T Consensus       333 ~p~RL~lsP~g~~lA~s~g----s~l~~~~se~g~  363 (420)
T KOG2096|consen  333 EPVRLELSPSGDSLAVSFG----SDLKVFASEDGK  363 (420)
T ss_pred             CceEEEeCCCCcEEEeecC----CceEEEEcccCc
Confidence            3346788999995555543    134444444444

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.95  E-value=1.5  Score=43.20  Aligned_cols=118  Identities=11%  Similarity=0.127  Sum_probs=69.5

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc--cCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~--~~~~~~~~p~wSPDG~~la~~~~~~~~~p~  270 (623)
                      ..+..|+|+.+.|+.+....        ..|+-++.+|.-   ++.+.  .-.|. ...+|.-+|++++ .  ++.    
T Consensus        88 vS~LTynp~~rtLFav~n~p--------~~iVElt~~Gdl---irtiPL~g~~Dp-E~Ieyig~n~fvi-~--dER----  148 (316)
T COG3204          88 VSSLTYNPDTRTLFAVTNKP--------AAIVELTKEGDL---IRTIPLTGFSDP-ETIEYIGGNQFVI-V--DER----  148 (316)
T ss_pred             ccceeeCCCcceEEEecCCC--------ceEEEEecCCce---EEEecccccCCh-hHeEEecCCEEEE-E--ehh----
Confidence            67899999999988776533        568888887654   44443  22232 2356888887443 2  332    


Q ss_pred             CceEEEEEEecCCCc-e--eeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEec
Q 006979          271 DKAELWVGYISENGD-V--YKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE  332 (623)
Q Consensus       271 ~~~~L~v~d~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~  332 (623)
                       ..+|+...++.+.. +  ....+-.+............+|+|+.+ +++.-.+  .-..||.++.
T Consensus       149 -~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr--~P~~I~~~~~  211 (316)
T COG3204         149 -DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER--NPIGIFEVTQ  211 (316)
T ss_pred             -cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc--CCcEEEEEec
Confidence             34577777776643 1  111111111101114567899999988 6555544  5567887763

>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins

Probab=95.94  E-value=0.049  Score=50.32  Aligned_cols=97  Identities=18%  Similarity=0.050  Sum_probs=64.3

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCce
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL  576 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv  576 (623)
                      ++|++-|-  +.....-...+..|+++|+.|+-+|-+      +-|-   ...-......|+.+.+++..++  ...+||
T Consensus         4 ~~v~~SGD--gGw~~~d~~~a~~l~~~G~~VvGvdsl------~Yfw---~~rtP~~~a~Dl~~~i~~y~~~--w~~~~v   70 (192)
T PF06057_consen    4 LAVFFSGD--GGWRDLDKQIAEALAKQGVPVVGVDSL------RYFW---SERTPEQTAADLARIIRHYRAR--WGRKRV   70 (192)
T ss_pred             EEEEEeCC--CCchhhhHHHHHHHHHCCCeEEEechH------HHHh---hhCCHHHHHHHHHHHHHHHHHH--hCCceE
Confidence            45555443  223322235788999999999999932      1111   2233345578899999887776  235899


Q ss_pred             EEEEcChHHHHHHHHh-cCC----CceeEEEeccc
Q 006979          577 CITGGSAGGYTTLAAL-AFR----DTFKAGASLYG  606 (623)
Q Consensus       577 ~i~G~S~GG~~~~~~~-~~~----~~f~a~v~~~g  606 (623)
                      .++|+|+|+=+.-.+. +.|    +.++.++.+.|
T Consensus        71 vLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p  105 (192)
T PF06057_consen   71 VLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSP  105 (192)
T ss_pred             EEEeecCCchhHHHHHhhCCHHHHhheeEEEEecc
Confidence            9999999998887777 544    35666666665

VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=95.93  E-value=0.42  Score=45.53  Aligned_cols=144  Identities=9%  Similarity=0.003  Sum_probs=86.1

Q ss_pred             CEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 006979          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (623)
Q Consensus       155 d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~  234 (623)
                      |.-+.+...++.+.++|..++ ...+.|-.     ...+....+|+||+.|...-.          ..+-..|..+=.  
T Consensus       155 D~~iLSSadd~tVRLWD~rTg-t~v~sL~~-----~s~VtSlEvs~dG~ilTia~g----------ssV~Fwdaksf~--  216 (334)
T KOG0278|consen  155 DKCILSSADDKTVRLWDHRTG-TEVQSLEF-----NSPVTSLEVSQDGRILTIAYG----------SSVKFWDAKSFG--  216 (334)
T ss_pred             CceEEeeccCCceEEEEeccC-cEEEEEec-----CCCCcceeeccCCCEEEEecC----------ceeEEecccccc--
Confidence            333344456677899999887 34444443     234566779999986654322          456666766532  


Q ss_pred             cceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE-cCCCCCccccCcCceeCCCCc
Q 006979          235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       235 ~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ws~DG~  313 (623)
                       +..-..-+-.+...+.+|+-. + |+...+      ...+|.+|..++..   .... .+..    ..+.-++|+|||.
T Consensus       217 -~lKs~k~P~nV~SASL~P~k~-~-fVaGge------d~~~~kfDy~TgeE---i~~~nkgh~----gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  217 -LLKSYKMPCNVESASLHPKKE-F-FVAGGE------DFKVYKFDYNTGEE---IGSYNKGHF----GPVHCVRFSPDGE  280 (334)
T ss_pred             -ceeeccCccccccccccCCCc-e-EEecCc------ceEEEEEeccCCce---eeecccCCC----CceEEEEECCCCc
Confidence             111112223345567899863 4 444232      34589999998843   2222 3333    4566789999997


Q ss_pred             EEEEEeCCCCeeeEEEEecC
Q 006979          314 LFFVTDRKNGFWNLHKWIES  333 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~  333 (623)
                      +|..... +|.-+||...+.
T Consensus       281 ~yAsGSE-DGTirlWQt~~~  299 (334)
T KOG0278|consen  281 LYASGSE-DGTIRLWQTTPG  299 (334)
T ss_pred             eeeccCC-CceEEEEEecCC
Confidence            6655444 788899987653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.85  E-value=1.3  Score=43.60  Aligned_cols=211  Identities=12%  Similarity=0.178  Sum_probs=108.0

Q ss_pred             CCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC-CE
Q 006979           79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DT  156 (623)
Q Consensus        79 ~t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~-d~  156 (623)
                      |.++.+.+....++++.|+| ...+|-+-..|.     .|+.+...  |+.....|-..-..       -..+...+ +.
T Consensus        76 i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~-----~iVElt~~--GdlirtiPL~g~~D-------pE~Ieyig~n~  141 (316)
T COG3204          76 IDAKPILGETANVSSLTYNPDTRTLFAVTNKPA-----AIVELTKE--GDLIRTIPLTGFSD-------PETIEYIGGNQ  141 (316)
T ss_pred             EeccccccccccccceeeCCCcceEEEecCCCc-----eEEEEecC--CceEEEecccccCC-------hhHeEEecCCE
Confidence            34444555556689999999 788888775554     47777765  45544444321000       01122222 24


Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCc-----eecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSP-----LPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~-----~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      .+.+++++++||.+.++.+ ...     .+++-+ ......-+...+|+|..++++++.|.++       ..||.++...
T Consensus       142 fvi~dER~~~l~~~~vd~~-t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-------~~I~~~~~~~  213 (316)
T COG3204         142 FVIVDERDRALYLFTVDAD-TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-------IGIFEVTQSP  213 (316)
T ss_pred             EEEEehhcceEEEEEEcCC-ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-------cEEEEEecCC
Confidence            5556667777777666532 111     122222 1111234667899999999999888654       5688887433


Q ss_pred             CCcccceeccc--CCCc----ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc---c
Q 006979          231 QNIQEPKVLVS--GSDF----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV---E  301 (623)
Q Consensus       231 g~~~~~~~l~~--~~~~----~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~---~  301 (623)
                      ...........  ..++    .++..+.+.-..|...+ +++.      .|..+|.++. .++...+..+.. .-.   .
T Consensus       214 ~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS-~ESr------~l~Evd~~G~-~~~~lsL~~g~~-gL~~dip  284 (316)
T COG3204         214 SSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLS-DESR------RLLEVDLSGE-VIELLSLTKGNH-GLSSDIP  284 (316)
T ss_pred             cccccccccCcccccceEeeccccceecCCCCcEEEEe-cCCc------eEEEEecCCC-eeeeEEeccCCC-CCcccCC
Confidence            21100000111  1111    34556776666677676 5543      2555555543 111222222211 000   1


Q ss_pred             cCcCceeCCCCcEEEEEeC
Q 006979          302 SPTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       302 ~~~~~~ws~DG~l~~~~~~  320 (623)
                      ....++-.++|.||.++..
T Consensus       285 qaEGiamDd~g~lYIvSEP  303 (316)
T COG3204         285 QAEGIAMDDDGNLYIVSEP  303 (316)
T ss_pred             CcceeEECCCCCEEEEecC
Confidence            1234566677778888876

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=95.84  E-value=0.12  Score=52.43  Aligned_cols=213  Identities=11%  Similarity=0.051  Sum_probs=119.6

Q ss_pred             CCCCC-CcCCHHHHhcc-CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCC--CccceeeeecCC
Q 006979           72 YGSWK-SPLTADVVSGA-SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE--YAVRTTAQEYGG  147 (623)
Q Consensus        72 ~g~w~-s~~t~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~--~~~r~~~~~~g~  147 (623)
                      |-.|. ..+..|.+..+ +.-++.+.|+. +..|-+...  .+|-.-+|.....    -.+.+...  ..+|       .
T Consensus       120 FtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD--~gG~iKyWqpnmn----nVk~~~ahh~eaIR-------d  185 (464)
T KOG0284|consen  120 FTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGD--KGGMIKYWQPNMN----NVKIIQAHHAEAIR-------D  185 (464)
T ss_pred             EEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcC--CCceEEecccchh----hhHHhhHhhhhhhh-------e
Confidence            33443 33567777665 44468889984 444555533  2455555544322    11122110  0122       2


Q ss_pred             ceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       148 ~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      .+|.+ .|..+.+...|+.|-++|..-. .+.++|...    ...+....|+|.-..|+-...|         +-+-.+|
T Consensus       186 lafSp-nDskF~t~SdDg~ikiWdf~~~-kee~vL~GH----gwdVksvdWHP~kgLiasgskD---------nlVKlWD  250 (464)
T KOG0284|consen  186 LAFSP-NDSKFLTCSDDGTIKIWDFRMP-KEERVLRGH----GWDVKSVDWHPTKGLIASGSKD---------NLVKLWD  250 (464)
T ss_pred             eccCC-CCceeEEecCCCeEEEEeccCC-chhheeccC----CCCcceeccCCccceeEEccCC---------ceeEeec
Confidence            33443 3455666667888888887644 356677543    4556667899976544433332         3456679


Q ss_pred             cCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (623)
Q Consensus       228 l~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
                      ..+|.-  +-.|......+....|+|+|.+|+-.+.|.        .+-++|+..-.   +.....+..    -.+....
T Consensus       251 prSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~skD~--------~~kv~DiR~mk---El~~~r~Hk----kdv~~~~  313 (464)
T KOG0284|consen  251 PRSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSKDQ--------SCKVFDIRTMK---ELFTYRGHK----KDVTSLT  313 (464)
T ss_pred             CCCcch--hhhhhhccceEEEEEEcCCCCeeEEccCCc--------eEEEEehhHhH---HHHHhhcch----hhheeec
Confidence            888751  222333344566788999999998776444        37788887432   233334433    3456788


Q ss_pred             eCCCCc-EEEEEeCCCCeeeEEEEe
Q 006979          308 WSSKGE-LFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       308 ws~DG~-l~~~~~~~~g~~~L~~~d  331 (623)
                      |.|=.. |+..... +|.-..|.++
T Consensus       314 WhP~~~~lftsgg~-Dgsvvh~~v~  337 (464)
T KOG0284|consen  314 WHPLNESLFTSGGS-DGSVVHWVVG  337 (464)
T ss_pred             cccccccceeeccC-CCceEEEecc
Confidence            999766 5544433 4544444443

>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function

Probab=95.83  E-value=0.016  Score=55.92  Aligned_cols=76  Identities=18%  Similarity=0.205  Sum_probs=49.2

Q ss_pred             CCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC----CCceeEEEeccc
Q 006979          532 YGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF----RDTFKAGASLYG  606 (623)
Q Consensus       532 ~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~----~~~f~a~v~~~g  606 (623)
                      |||+......|.+...-.+.. ...-...|++|+.+.-.-.+++|.+.|||.||.+|.+++ ..    .+++..+.++.|
T Consensus        43 FRGTd~t~~~W~ed~~~~~~~-~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg  121 (224)
T PF11187_consen   43 FRGTDDTLVDWKEDFNMSFQD-ETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG  121 (224)
T ss_pred             EECCCCchhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence            566655555566554433331 233446777777653222245799999999999999988 32    457888888877


Q ss_pred             CC
Q 006979          607 VS  608 (623)
Q Consensus       607 ~~  608 (623)
                      +-
T Consensus       122 PG  123 (224)
T PF11187_consen  122 PG  123 (224)
T ss_pred             CC
Confidence            63

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=95.80  E-value=0.021  Score=38.18  Aligned_cols=28  Identities=7%  Similarity=-0.030  Sum_probs=19.7

Q ss_pred             ecCCCCCCCCeeecceeeCCCCCEEEEEEecc
Q 006979          181 PITPDYGEPLVSYADGIFDPRFNRYVTVREDR  212 (623)
Q Consensus       181 ~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~  212 (623)
                      +++..    ......+.|||||++|+|++...
T Consensus         3 ~~t~~----~~~~~~p~~SpDGk~i~f~s~~~   30 (39)
T PF07676_consen    3 QLTNS----PGDDGSPAWSPDGKYIYFTSNRN   30 (39)
T ss_dssp             EES-S----SSSEEEEEE-TTSSEEEEEEECT
T ss_pred             CcccC----CccccCEEEecCCCEEEEEecCC
Confidence            45554    34556799999999999998755

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.76  E-value=1.3  Score=44.59  Aligned_cols=246  Identities=9%  Similarity=-0.039  Sum_probs=127.5

Q ss_pred             EeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          152 IFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       152 ~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      ..++ .+.++..+++.|+++|..+| .-.+-|...    .....|..++..|+.++-...|-         .+.+.|.++
T Consensus       116 ~hp~~~~v~~as~d~tikv~D~~tg-~~e~~LrGH----t~sv~di~~~a~Gk~l~tcSsDl---------~~~LWd~~~  181 (406)
T KOG0295|consen  116 FHPSEALVVSASEDATIKVFDTETG-ELERSLRGH----TDSVFDISFDASGKYLATCSSDL---------SAKLWDFDT  181 (406)
T ss_pred             eccCceEEEEecCCceEEEEEccch-hhhhhhhcc----ccceeEEEEecCccEEEecCCcc---------chhheeHHH
Confidence            3455 57777777888999999887 222333321    22377899999998776554432         134445544


Q ss_pred             CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979          231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (623)
Q Consensus       231 g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~  310 (623)
                      -. +..+.+......+..+.+-|-|.+|+-...|+        .|...+++++-   -...+.+..    +.+..++-..
T Consensus       182 ~~-~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~--------tik~We~~tg~---cv~t~~~h~----ewvr~v~v~~  245 (406)
T KOG0295|consen  182 FF-RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN--------TIKAWECDTGY---CVKTFPGHS----EWVRMVRVNQ  245 (406)
T ss_pred             HH-HHHHHhcCcccceeeEEEEecCCeeeeccccc--------ceeEEecccce---eEEeccCch----HhEEEEEecC
Confidence            21 11233344444567788899998887655443        26777888772   344555555    3344556678


Q ss_pred             CCcEEEEEeCCCCeeeEEEEecCCCeEEEEe-ecccccccccccccCc--ceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGIN--SYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       311 DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~-~~~~~~~~~~w~~~~~--~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                      ||.|+..... +..-++|.+.  +++-+.+. ..+..+--..|.+...  +...-..+.++..+.....+++.-+++  |
T Consensus       246 DGti~As~s~-dqtl~vW~~~--t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w--d  320 (406)
T KOG0295|consen  246 DGTIIASCSN-DQTLRVWVVA--TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW--D  320 (406)
T ss_pred             CeeEEEecCC-CceEEEEEec--cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE--e
Confidence            8865443333 3445666553  33111111 0011111112222111  000000011445677777788877776  4


Q ss_pred             CCCCce-eecccCCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          388 DFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       388 ~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ..++.. -.|-....+|.++ ...+++.++..++..   .|-..|+..++
T Consensus       321 v~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk---tlrvwdl~~~~  367 (406)
T KOG0295|consen  321 VSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK---TLRVWDLKNLQ  367 (406)
T ss_pred             ccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC---cEEEEEeccce
Confidence            445533 2343434456655 444555556555432   34445555553

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.70  E-value=0.53  Score=51.52  Aligned_cols=214  Identities=13%  Similarity=0.079  Sum_probs=104.8

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE---EEcCC
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA---IALNG  230 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~---idl~~  230 (623)
                      +|..++.....|.|-++|+.+. .....+...    ..-..+.+.+||++..+-...|+.       -.+|-   ++-..
T Consensus       423 gd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AH----dgaIWsi~~~pD~~g~vT~saDkt-------VkfWdf~l~~~~~  490 (888)
T KOG0306|consen  423 GDRYIVLGTKNGELQVFDLASA-SLVETIRAH----DGAIWSISLSPDNKGFVTGSADKT-------VKFWDFKLVVSVP  490 (888)
T ss_pred             CCceEEEeccCCceEEEEeehh-hhhhhhhcc----ccceeeeeecCCCCceEEecCCcE-------EEEEeEEEEeccC
Confidence            4445555666777888888764 122222211    233556788999998877766542       12221   11122


Q ss_pred             CCccc------ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979          231 QNIQE------PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       231 g~~~~------~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  304 (623)
                      |....      .++|.-. +-+...+.||||++||..--|      +...+|.+|  +-   ....-+-|..    .-+.
T Consensus       491 gt~~k~lsl~~~rtLel~-ddvL~v~~Spdgk~LaVsLLd------nTVkVyflD--tl---KFflsLYGHk----LPV~  554 (888)
T KOG0306|consen  491 GTQKKVLSLKHTRTLELE-DDVLCVSVSPDGKLLAVSLLD------NTVKVYFLD--TL---KFFLSLYGHK----LPVL  554 (888)
T ss_pred             cccceeeeeccceEEecc-ccEEEEEEcCCCcEEEEEecc------CeEEEEEec--ce---eeeeeecccc----ccee
Confidence            22100      1222212 223446799999999866533      244455544  32   1222333433    3345


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      ...-|||++++..... +.+-.+|=+|-.. --+-+...+..         .....|+    ...+++|+..+++.-.- 
T Consensus       555 smDIS~DSklivTgSA-DKnVKiWGLdFGD-CHKS~fAHdDS---------vm~V~F~----P~~~~FFt~gKD~kvKq-  618 (888)
T KOG0306|consen  555 SMDISPDSKLIVTGSA-DKNVKIWGLDFGD-CHKSFFAHDDS---------VMSVQFL----PKTHLFFTCGKDGKVKQ-  618 (888)
T ss_pred             EEeccCCcCeEEeccC-CCceEEeccccch-hhhhhhcccCc---------eeEEEEc----ccceeEEEecCcceEEe-
Confidence            6677899996666544 3445566444311 11222211111         1234555    45678888877665443 


Q ss_pred             EEeCCC-CceeecccCCcceEee--eecCCE
Q 006979          385 ILDDFG-HSLSLLDIPFTDIDNI--TLGNDC  412 (623)
Q Consensus       385 ~~d~~~-~~~~~lt~~~~~v~~~--~~~~~~  412 (623)
                       +|-+. ..++.|......+.-+  .++|+.
T Consensus       619 -WDg~kFe~iq~L~~H~~ev~cLav~~~G~~  648 (888)
T KOG0306|consen  619 -WDGEKFEEIQKLDGHHSEVWCLAVSPNGSF  648 (888)
T ss_pred             -echhhhhhheeeccchheeeeeEEcCCCCe
Confidence             33221 2233444433334433  555553

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=95.70  E-value=0.38  Score=50.19  Aligned_cols=92  Identities=18%  Similarity=0.308  Sum_probs=56.2

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-eeeeEEEcCCCCCc
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTI  299 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~~~~~~~~~~~~~~  299 (623)
                      ...+++|.++..   ..++-.+.+-.+-.++||||..||.-+.|.        -||++.++.++. +.......+     
T Consensus       428 G~w~V~d~e~~~---lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~--------~iyiy~Vs~~g~~y~r~~k~~g-----  491 (626)
T KOG2106|consen  428 GRWFVLDTETQD---LVTIHTDNEQLSVVRYSPDGAFLAVGSHDN--------HIYIYRVSANGRKYSRVGKCSG-----  491 (626)
T ss_pred             ceEEEEecccce---eEEEEecCCceEEEEEcCCCCEEEEecCCC--------eEEEEEECCCCcEEEEeeeecC-----
Confidence            678889988765   444433455556678999999999776332        277777766653 111112222     


Q ss_pred             cccCcCceeCCCCcEEEEEeCCCCeeeEEEEec
Q 006979          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (623)
Q Consensus       300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~  332 (623)
                       ..+....||+|++ |++++. -++.-|| +.+
T Consensus       492 -s~ithLDwS~Ds~-~~~~~S-~d~eiLy-W~~  520 (626)
T KOG2106|consen  492 -SPITHLDWSSDSQ-FLVSNS-GDYEILY-WKP  520 (626)
T ss_pred             -ceeEEeeecCCCc-eEEecc-CceEEEE-Ecc
Confidence             2456789999996 445555 3444444 444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=95.62  E-value=0.022  Score=59.52  Aligned_cols=57  Identities=14%  Similarity=0.053  Sum_probs=37.9

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccC-CCcccceeeCCCCCEEEEE
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWI  261 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~  261 (623)
                      .+.++|||||++|++|..|         .-|.++|.++.+   +.-+... ..-..-.+||||||+|+--
T Consensus       293 in~f~FS~DG~~LA~VSqD---------GfLRvF~fdt~e---Llg~mkSYFGGLLCvcWSPDGKyIvtG  350 (636)
T KOG2394|consen  293 INEFAFSPDGKYLATVSQD---------GFLRIFDFDTQE---LLGVMKSYFGGLLCVCWSPDGKYIVTG  350 (636)
T ss_pred             ccceeEcCCCceEEEEecC---------ceEEEeeccHHH---HHHHHHhhccceEEEEEcCCccEEEec
Confidence            3578899999999999886         457777877654   2222111 0111235799999998744

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=95.61  E-value=0.24  Score=51.94  Aligned_cols=85  Identities=14%  Similarity=0.177  Sum_probs=51.5

Q ss_pred             CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc
Q 006979          162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS  241 (623)
Q Consensus       162 ~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~  241 (623)
                      ..||++.+++-.+.  ..+.+...    ..-....+|+|||..|+-+-||         +.+-.... +|-.  ...+..
T Consensus        82 s~DGkf~il~k~~r--VE~sv~AH----~~A~~~gRW~~dGtgLlt~GED---------G~iKiWSr-sGML--RStl~Q  143 (737)
T KOG1524|consen   82 SNDGRFVILNKSAR--VERSISAH----AAAISSGRWSPDGAGLLTAGED---------GVIKIWSR-SGML--RSTVVQ  143 (737)
T ss_pred             cCCceEEEecccch--hhhhhhhh----hhhhhhcccCCCCceeeeecCC---------ceEEEEec-cchH--HHHHhh
Confidence            36787888765432  22333321    1234457899999999887665         33444443 3431  223444


Q ss_pred             CCCcccceeeCCCCCEEEEEEec
Q 006979          242 GSDFYAFPRMDPRGERMAWIEWH  264 (623)
Q Consensus       242 ~~~~~~~p~wSPDG~~la~~~~~  264 (623)
                      ....+...+|.||...+.|...+
T Consensus       144 ~~~~v~c~~W~p~S~~vl~c~g~  166 (737)
T KOG1524|consen  144 NEESIRCARWAPNSNSIVFCQGG  166 (737)
T ss_pred             cCceeEEEEECCCCCceEEecCC
Confidence            44555567899999999999644

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=95.60  E-value=1.8  Score=42.52  Aligned_cols=150  Identities=12%  Similarity=0.066  Sum_probs=89.1

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++.+...|+++-++|....  ...++-+.    ......+.|..++..+...--|         ++|-+.|+..+..  
T Consensus       146 ~lv~SgsdD~t~kl~D~R~k--~~~~t~~~----kyqltAv~f~d~s~qv~sggId---------n~ikvWd~r~~d~--  208 (338)
T KOG0265|consen  146 QLVCSGSDDGTLKLWDIRKK--EAIKTFEN----KYQLTAVGFKDTSDQVISGGID---------NDIKVWDLRKNDG--  208 (338)
T ss_pred             eEEEecCCCceEEEEeeccc--chhhcccc----ceeEEEEEecccccceeecccc---------CceeeeccccCcc--
Confidence            57778888888999998765  33333322    3455667788888776653322         5577778865541  


Q ss_pred             ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee-eEEEcCCCCCccccCcCceeCCCCc-
Q 006979          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKWSSKGE-  313 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ws~DG~-  313 (623)
                      .-.+....|.+.+...||+|.+|.=.+++.        .|.+.|+..-..-.. ..+..+..-......-.-.|+|+++ 
T Consensus       209 ~~~lsGh~DtIt~lsls~~gs~llsnsMd~--------tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~  280 (338)
T KOG0265|consen  209 LYTLSGHADTITGLSLSRYGSFLLSNSMDN--------TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK  280 (338)
T ss_pred             eEEeecccCceeeEEeccCCCccccccccc--------eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence            344555668888899999999887555443        256666554322011 2233333211123445678999987 


Q ss_pred             EEEEEeCCCCeeeEEEEecCC
Q 006979          314 LFFVTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~  334 (623)
                      +-+.+..    ..+|.+|..+
T Consensus       281 i~ags~d----r~vyvwd~~~  297 (338)
T KOG0265|consen  281 ITAGSAD----RFVYVWDTTS  297 (338)
T ss_pred             ccccccc----ceEEEeeccc
Confidence            4443322    3577777544

>PRK04940 hypothetical protein; Provisional

Probab=95.56  E-value=0.044  Score=50.40  Aligned_cols=36  Identities=19%  Similarity=0.142  Sum_probs=27.3

Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                      ++++|+|.|+|||.+.+++ .+.  .+| |.+.|.+....
T Consensus        60 ~~~~liGSSLGGyyA~~La~~~g--~~a-VLiNPAv~P~~   96 (180)
T PRK04940         60 ERPLICGVGLGGYWAERIGFLCG--IRQ-VIFNPNLFPEE   96 (180)
T ss_pred             CCcEEEEeChHHHHHHHHHHHHC--CCE-EEECCCCChHH
Confidence            4699999999999999999 554  344 66667665544

>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants

Probab=95.53  E-value=0.11  Score=50.02  Aligned_cols=97  Identities=19%  Similarity=0.162  Sum_probs=64.7

Q ss_pred             EEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC--cCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccch
Q 006979          477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD  554 (623)
Q Consensus       477 ~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~--~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~  554 (623)
                      .|+..|+.+          -.||.+-||......+  .|+...+.++++||+|++.=|.-+-.+..-=.         ..
T Consensus         8 ~wvl~P~~P----------~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~A~---------~~   68 (250)
T PF07082_consen    8 SWVLIPPRP----------KGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAIAR---------EV   68 (250)
T ss_pred             cEEEeCCCC----------CEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHHHH---------HH
Confidence            366667542          2577777886555555  45678888999999999998875333222111         12


Q ss_pred             HHHHHHHHHHHHhCCCCCCC--ceEEEEcChHHHHHHHHh
Q 006979          555 VNDCCSCATFLVGSGKADEK--RLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~--rv~i~G~S~GG~~~~~~~  592 (623)
                      .+....+++.|.+++..++.  .+.=+|||+|.-+-+.+.
T Consensus        69 ~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~  108 (250)
T PF07082_consen   69 WERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIG  108 (250)
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHh
Confidence            34455677777776555443  577799999999888876

Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=95.45  E-value=0.1  Score=54.67  Aligned_cols=72  Identities=10%  Similarity=0.100  Sum_probs=46.0

Q ss_pred             CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (623)
Q Consensus       243 ~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~  322 (623)
                      .+-....+|||||++||.++.|.        -|.+++.++..      ++.... .+.+...=..|||||+++.+.-. +
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDG--------fLRvF~fdt~e------Llg~mk-SYFGGLLCvcWSPDGKyIvtGGE-D  353 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDG--------FLRIFDFDTQE------LLGVMK-SYFGGLLCVCWSPDGKYIVTGGE-D  353 (636)
T ss_pred             cccccceeEcCCCceEEEEecCc--------eEEEeeccHHH------HHHHHH-hhccceEEEEEcCCccEEEecCC-c
Confidence            33456678999999999997443        48888887642      111111 11134456799999996666554 5


Q ss_pred             CeeeEEEE
Q 006979          323 GFWNLHKW  330 (623)
Q Consensus       323 g~~~L~~~  330 (623)
                      +--.+|.+
T Consensus       354 DLVtVwSf  361 (636)
T KOG2394|consen  354 DLVTVWSF  361 (636)
T ss_pred             ceEEEEEe
Confidence            66667765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.44  E-value=2  Score=41.64  Aligned_cols=191  Identities=14%  Similarity=-0.025  Sum_probs=92.7

Q ss_pred             eCCEEEEEeCCCCcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979          153 FGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (623)
Q Consensus       153 s~d~l~f~~~~~~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g  231 (623)
                      .++.+++. ..++.|+.+|..+|  +.. .....    ......+  ..++..+++...+         +.|+.+|..+|
T Consensus        35 ~~~~v~~~-~~~~~l~~~d~~tG--~~~W~~~~~----~~~~~~~--~~~~~~v~v~~~~---------~~l~~~d~~tG   96 (238)
T PF13360_consen   35 DGGRVYVA-SGDGNLYALDAKTG--KVLWRFDLP----GPISGAP--VVDGGRVYVGTSD---------GSLYALDAKTG   96 (238)
T ss_dssp             ETTEEEEE-ETTSEEEEEETTTS--EEEEEEECS----SCGGSGE--EEETTEEEEEETT---------SEEEEEETTTS
T ss_pred             eCCEEEEE-cCCCEEEEEECCCC--CEEEEeecc----cccccee--eecccccccccce---------eeeEecccCCc
Confidence            44455554 46777999998877  321 11111    1111122  2244556555432         47999998888


Q ss_pred             Ccccceeccc--CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc-------c
Q 006979          232 NIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE-------S  302 (623)
Q Consensus       232 ~~~~~~~l~~--~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~-------~  302 (623)
                      +.........  .......+....+|..+++...        ...|+.+|+.++.   ..+......+....       .
T Consensus        97 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~l~~~d~~tG~---~~w~~~~~~~~~~~~~~~~~~~  165 (238)
T PF13360_consen   97 KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--------SGKLVALDPKTGK---LLWKYPVGEPRGSSPISSFSDI  165 (238)
T ss_dssp             CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--------CSEEEEEETTTTE---EEEEEESSTT-SS--EEEETTE
T ss_pred             ceeeeeccccccccccccccCceEecCEEEEEec--------cCcEEEEecCCCc---EEEEeecCCCCCCcceeeeccc
Confidence            7422111111  1122233344445777766542        3458999988773   22222221101000       0


Q ss_pred             CcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEE
Q 006979          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (623)
Q Consensus       303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~  382 (623)
                      ...+.. .+| .+|+... .+.  +..+|..+++.. .........         .. +.   .+++.+|+.. .+  .+
T Consensus       166 ~~~~~~-~~~-~v~~~~~-~g~--~~~~d~~tg~~~-w~~~~~~~~---------~~-~~---~~~~~l~~~~-~~--~~  223 (238)
T PF13360_consen  166 NGSPVI-SDG-RVYVSSG-DGR--VVAVDLATGEKL-WSKPISGIY---------SL-PS---VDGGTLYVTS-SD--GR  223 (238)
T ss_dssp             EEEEEC-CTT-EEEEECC-TSS--EEEEETTTTEEE-EEECSS-EC---------EC-EE---CCCTEEEEEE-TT--TE
T ss_pred             ccceEE-ECC-EEEEEcC-CCe--EEEEECCCCCEE-EEecCCCcc---------CC-ce---eeCCEEEEEe-CC--CE
Confidence            122222 245 4444443 232  666688888733 211111110         00 11   1677777766 33  57


Q ss_pred             EEEEeCCCCcee
Q 006979          383 LGILDDFGHSLS  394 (623)
Q Consensus       383 L~~~d~~~~~~~  394 (623)
                      |+.+|+.+|+..
T Consensus       224 l~~~d~~tG~~~  235 (238)
T PF13360_consen  224 LYALDLKTGKVV  235 (238)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCCEE
Confidence            889999988753

...

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=95.38  E-value=0.74  Score=46.73  Aligned_cols=159  Identities=14%  Similarity=0.097  Sum_probs=93.2

Q ss_pred             eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCC---CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPD---YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~---~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      .|.+-+|.++-+...|..|-++....+ ...+.|+..   ...-.-|++-..|+|--.-+++...-.        +.+.+
T Consensus        88 ~w~PfnD~vIASgSeD~~v~vW~IPe~-~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D--------n~v~i  158 (472)
T KOG0303|consen   88 DWCPFNDCVIASGSEDTKVMVWQIPEN-GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD--------NTVSI  158 (472)
T ss_pred             ccCccCCceeecCCCCceEEEEECCCc-ccccCcccceEEEeecceeEEEEeecccchhhHhhccCC--------ceEEE
Confidence            466667777777667766666665432 133344421   001134666777888766666543321        67888


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      .++++|+.  ...|. ..+.+....|+-||.+|+-...|.        .|.++|...+..+.+...-.|      .....
T Consensus       159 Wnv~tgea--li~l~-hpd~i~S~sfn~dGs~l~TtckDK--------kvRv~dpr~~~~v~e~~~heG------~k~~R  221 (472)
T KOG0303|consen  159 WNVGTGEA--LITLD-HPDMVYSMSFNRDGSLLCTTCKDK--------KVRVIDPRRGTVVSEGVAHEG------AKPAR  221 (472)
T ss_pred             EeccCCce--eeecC-CCCeEEEEEeccCCceeeeecccc--------eeEEEcCCCCcEeeecccccC------CCcce
Confidence            89999862  33344 556667789999999888766443        378888776633222211122      34467


Q ss_pred             ceeCCCCcEEEEEeC-CCCeeeEEEEecCC
Q 006979          306 PKWSSKGELFFVTDR-KNGFWNLHKWIESN  334 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~-~~g~~~L~~~d~~~  334 (623)
                      ..|..+|+ ++.+.. .-...++-++|+..
T Consensus       222 aifl~~g~-i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  222 AIFLASGK-IFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             eEEeccCc-eeeeccccccccceeccCccc
Confidence            88999997 444322 12234555566543

>PRK13614 lipoprotein LpqB; Provisional

Probab=95.36  E-value=3  Score=46.05  Aligned_cols=167  Identities=17%  Similarity=0.215  Sum_probs=95.0

Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW  325 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~  325 (623)
                      ...+..|+||+.+|++..       +...|++......    ...++.+      ..+..|.|+++| .+|...+ ....
T Consensus       345 ~~s~avS~~g~~~A~~~~-------~~~~l~~~~~g~~----~~~~~~g------~~Lt~PS~d~~g-~vWtv~~-g~~~  405 (573)
T PRK13614        345 PASPAESPVSQTVAFLNG-------SRTTLYTVSPGQP----ARALTSG------STLTRPSFSPQD-WVWTAGP-GGNG  405 (573)
T ss_pred             ccceeecCCCceEEEecC-------CCcEEEEecCCCc----ceeeecC------CCccCCcccCCC-CEEEeeC-CCCc
Confidence            446789999999999842       2346777665321    3444544      346799999998 5666655 2333


Q ss_pred             eEEEEecCC-CeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE--Ee-CCCCceeecccCC-
Q 006979          326 NLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI--LD-DFGHSLSLLDIPF-  400 (623)
Q Consensus       326 ~L~~~d~~~-~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~--~d-~~~~~~~~lt~~~-  400 (623)
                      +|.++..++ ++.....   .+.....|..+ ....-+..|.||-++.+..+.+|..+|++  +- ...|..+.|+.+. 
T Consensus       406 ~vv~~~~~g~~~~~~~~---~~~v~~~~l~g-~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~  481 (573)
T PRK13614        406 RIVAYRPTGVAEGAQAP---TVTLTADWLAG-RTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPIT  481 (573)
T ss_pred             eEEEEecCCCccccccc---ceeecccccCC-CeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCcee
Confidence            666665432 1111100   01112235443 12333334559988888887788755554  32 2345555565432 


Q ss_pred             ----cceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          401 ----TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       401 ----~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                          ..+..+ ..+++.+++...........+++.+..+.
T Consensus       482 ~~~~~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~  521 (573)
T PRK13614        482 LAADSDADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQ  521 (573)
T ss_pred             cccCCCcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCC
Confidence                223344 45677777777666666678888886665

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=95.33  E-value=0.047  Score=59.97  Aligned_cols=84  Identities=11%  Similarity=0.022  Sum_probs=56.1

Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~  244 (623)
                      -.|.++|..+. .-.|.+-..    ..+.+|+.|||||++|+-..-|         +.|.++|+-++..   .-...-..
T Consensus       556 f~I~vvD~~t~-kvvR~f~gh----~nritd~~FS~DgrWlisasmD---------~tIr~wDlpt~~l---ID~~~vd~  618 (910)
T KOG1539|consen  556 FSIRVVDVVTR-KVVREFWGH----GNRITDMTFSPDGRWLISASMD---------STIRTWDLPTGTL---IDGLLVDS  618 (910)
T ss_pred             eeEEEEEchhh-hhhHHhhcc----ccceeeeEeCCCCcEEEEeecC---------CcEEEEeccCcce---eeeEecCC
Confidence            34777877654 123444322    5788999999999998876554         6799999988862   21111122


Q ss_pred             cccceeeCCCCCEEEEEEecC
Q 006979          245 FYAFPRMDPRGERMAWIEWHH  265 (623)
Q Consensus       245 ~~~~p~wSPDG~~la~~~~~~  265 (623)
                      .....++||+|.+||-+..++
T Consensus       619 ~~~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  619 PCTSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             cceeeEECCCCCEEEEEEecC
Confidence            234567999999999876554

>PRK13613 lipoprotein LpqB; Provisional

Probab=95.31  E-value=2.8  Score=46.65  Aligned_cols=166  Identities=10%  Similarity=0.162  Sum_probs=90.1

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-c-cceecccCCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q-EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP  269 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-~-~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p  269 (623)
                      ....+..|++|+.++++..+.        ..|++-++.++.. . ..+.+..+.. ...|.|.++| +| |+. +...  
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~--------~~l~vg~~~~~~~~~~~~~~~~~~~~-Lt~PS~d~~g-~v-Wtv-d~~~--  429 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADG--------DSVYVGSLTPGASIGVHSWGVTADGR-LTSPSWDGRG-DL-WVV-DRDP--  429 (599)
T ss_pred             CccceEEcCCCceEEEEcCCC--------cEEEEeccCCCCccccccceeeccCc-ccCCcCcCCC-CE-EEe-cCCC--
Confidence            345678999999999985422        5677766544431 0 0112333333 5679999999 54 454 3211  


Q ss_pred             CCceE-EEEEEecCCCceeeeEEEc-CCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEE--EEec-CCCeEEEEe--
Q 006979          270 WDKAE-LWVGYISENGDVYKRVCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIE-SNNEVLAIY--  341 (623)
Q Consensus       270 ~~~~~-L~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~--~~d~-~~~~~~~l~--  341 (623)
                       ...+ |.+..- ++..   ..+.. ... .  ..+..++-|+||. ++++.+. .+..+|+  .+-- ..+. +.|+  
T Consensus       430 -~~~~vl~v~~~-~G~~---~~V~~~~l~-g--~~I~~lrvSrDG~RvAvv~~~-~g~~~v~va~V~R~~~G~-~~l~~~  499 (599)
T PRK13613        430 -ADPRLLWLLQG-DGEP---VEVRTPELD-G--HRVVAVRVARDGVRVALIVEK-DGRRSLQIGRIVRDAKAV-VSVEEF  499 (599)
T ss_pred             -CCceEEEEEcC-CCcE---EEeeccccC-C--CEeEEEEECCCccEEEEEEec-CCCcEEEEEEEEeCCCCc-EEeecc
Confidence             1223 444442 3321   11222 111 1  2578899999998 7777665 3444444  3332 2343 3333  


Q ss_pred             ----ecccccccccccccCcceeEEeecCCCCEEEEEE-EECCeEEEEEEeCCCCcee
Q 006979          342 ----SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLS  394 (623)
Q Consensus       342 ----~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~-~~~g~~~L~~~d~~~~~~~  394 (623)
                          .+..++....|.             ++..|++.. ...+...++++++++....
T Consensus       500 ~~l~~~l~~v~~~~W~-------------~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~  544 (599)
T PRK13613        500 RSLAPELEDVTDMSWA-------------GDSQLVVLGREEGGVQQARYVQVDGSTPP  544 (599)
T ss_pred             EEeccCCCccceeEEc-------------CCCEEEEEeccCCCCcceEEEecCCcCcc
Confidence                222233444555             556666643 3455777999999876554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.30  E-value=2.1  Score=47.10  Aligned_cols=156  Identities=10%  Similarity=0.062  Sum_probs=90.2

Q ss_pred             CCceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       146 g~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      ...++.++.|.++......+.|-+++.++. ...+.++.+     . .-.-.|-|.+++|+.-+.+         +.|-+
T Consensus       375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~-kciRTi~~~-----y-~l~~~Fvpgd~~Iv~G~k~---------Gel~v  438 (888)
T KOG0306|consen  375 DVRSLCVSSDSILLASGAGESIKIWNRDTL-KCIRTITCG-----Y-ILASKFVPGDRYIVLGTKN---------GELQV  438 (888)
T ss_pred             heeEEEeecCceeeeecCCCcEEEEEccCc-ceeEEeccc-----c-EEEEEecCCCceEEEeccC---------CceEE
Confidence            345788888855554444556777777765 467777764     1 1223578888877765442         66888


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec--CCCc------eeeeEEEcCCCC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGD------VYKRVCVAGFDP  297 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~--~~~~------~~~~~~~~~~~~  297 (623)
                      +|+.+...  +..+....+..-..+.+||++..+-.+.|+.      ..+|-..+-  .+++      +...+.+. .+ 
T Consensus       439 fdlaS~~l--~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt------VkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~-  508 (888)
T KOG0306|consen  439 FDLASASL--VETIRAHDGAIWSISLSPDNKGFVTGSADKT------VKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LE-  508 (888)
T ss_pred             EEeehhhh--hhhhhccccceeeeeecCCCCceEEecCCcE------EEEEeEEEEeccCcccceeeeeccceEEe-cc-
Confidence            99988752  2222212223344678999998876664542      233322221  1121      01111121 12 


Q ss_pred             CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEe
Q 006979          298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       298 ~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d  331 (623)
                         ..+.-...||||+++.++-- +..-.+|.+|
T Consensus       509 ---ddvL~v~~Spdgk~LaVsLL-dnTVkVyflD  538 (888)
T KOG0306|consen  509 ---DDVLCVSVSPDGKLLAVSLL-DNTVKVYFLD  538 (888)
T ss_pred             ---ccEEEEEEcCCCcEEEEEec-cCeEEEEEec
Confidence               24556789999997777765 5666777765

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.26  E-value=0.042  Score=54.76  Aligned_cols=145  Identities=10%  Similarity=0.071  Sum_probs=86.8

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .|+-+...++.|+++|+..+ ...+.+.-     ..+-+..+|+|.+  ..|+..+..       ..||.+|...-..  
T Consensus       201 sILas~~sDrsIvLyD~R~~-~Pl~KVi~-----~mRTN~IswnPea--fnF~~a~ED-------~nlY~~DmR~l~~--  263 (433)
T KOG0268|consen  201 SILASCASDRSIVLYDLRQA-SPLKKVIL-----TMRTNTICWNPEA--FNFVAANED-------HNLYTYDMRNLSR--  263 (433)
T ss_pred             hheeeeccCCceEEEecccC-Cccceeee-----eccccceecCccc--cceeecccc-------ccceehhhhhhcc--
Confidence            35555545667999999865 33344444     3677889999944  344443221       5699998754220  


Q ss_pred             ceecccCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcE
Q 006979          236 PKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL  314 (623)
Q Consensus       236 ~~~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l  314 (623)
                      +..+..+. .-+....|||-|+-++-.+.|.+        |.++....+.   .+.+.-... .  +.+..+.||.|.+.
T Consensus       264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks--------IRIf~~~~~~---SRdiYhtkR-M--q~V~~Vk~S~Dsky  329 (433)
T KOG0268|consen  264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS--------IRIFPVNHGH---SRDIYHTKR-M--QHVFCVKYSMDSKY  329 (433)
T ss_pred             cchhhcccceeEEEeccCCCcchhccccccce--------EEEeecCCCc---chhhhhHhh-h--heeeEEEEeccccE
Confidence            22222222 12345679999998876665543        7777777662   122211111 1  56678899999984


Q ss_pred             EEEEeCCCCeeeEEEEec
Q 006979          315 FFVTDRKNGFWNLHKWIE  332 (623)
Q Consensus       315 ~~~~~~~~g~~~L~~~d~  332 (623)
                      ++...+ ++.-+||+...
T Consensus       330 i~SGSd-d~nvRlWka~A  346 (433)
T KOG0268|consen  330 IISGSD-DGNVRLWKAKA  346 (433)
T ss_pred             EEecCC-Ccceeeeecch
Confidence            444333 58889998654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=95.25  E-value=0.87  Score=49.29  Aligned_cols=167  Identities=10%  Similarity=-0.048  Sum_probs=97.0

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc---ccceeeCCCCCEEEEEEecCCC
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF---YAFPRMDPRGERMAWIEWHHPN  267 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~---~~~p~wSPDG~~la~~~~~~~~  267 (623)
                      ......+.||||++|++.+-..        ..||++..+. .+ .++.+.....+   .....|+-|+.++++++.+   
T Consensus       383 ~nIs~~aiSPdg~~Ia~st~~~--------~~iy~L~~~~-~v-k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~---  449 (691)
T KOG2048|consen  383 ENISCAAISPDGNLIAISTVSR--------TKIYRLQPDP-NV-KVINVDDVPLALLDASAISFTIDKNKLFLVSKN---  449 (691)
T ss_pred             cceeeeccCCCCCEEEEeeccc--------eEEEEeccCc-ce-eEEEeccchhhhccceeeEEEecCceEEEEecc---
Confidence            3445567999999999876532        6788888766 31 12222222221   2345689999999888733   


Q ss_pred             CCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe-eccc
Q 006979          268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDA  345 (623)
Q Consensus       268 ~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~-~~~~  345 (623)
                          ..+|..+++++...   +.+..-.......++....-|+||+ +...+    ....|+.+++.+.+.+.+. ..+.
T Consensus       450 ----~~~le~~el~~ps~---kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~----t~g~I~v~nl~~~~~~~l~~rln~  518 (691)
T KOG2048|consen  450 ----IFSLEEFELETPSF---KELKSIQSQAKCPSISRLVVSSDGNYIAAIS----TRGQIFVYNLETLESHLLKVRLNI  518 (691)
T ss_pred             ----cceeEEEEecCcch---hhhhccccccCCCcceeEEEcCCCCEEEEEe----ccceEEEEEcccceeecchhccCc
Confidence                44578888776521   2221111111225788899999998 44443    2357899999998877765 2233


Q ss_pred             ccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceee
Q 006979          346 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL  395 (623)
Q Consensus       346 ~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~  395 (623)
                      .++.....+           +.-+.+++..   ...++|-+|++..++.+
T Consensus       519 ~vTa~~~~~-----------~~~~~lvvat---s~nQv~efdi~~~~l~~  554 (691)
T KOG2048|consen  519 DVTAAAFSP-----------FVRNRLVVAT---SNNQVFEFDIEARNLTR  554 (691)
T ss_pred             ceeeeeccc-----------cccCcEEEEe---cCCeEEEEecchhhhhh
Confidence            333222211           0334455443   23568888886555443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=95.24  E-value=3.8  Score=43.62  Aligned_cols=218  Identities=10%  Similarity=0.032  Sum_probs=112.0

Q ss_pred             CCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCC--EEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc
Q 006979          163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (623)
Q Consensus       163 ~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~--~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~  240 (623)
                      ..+.++.+++..-.....+|..      .+.+++.+||.+.  +|++..-.....|  ..-+||.+...+..    ..+.
T Consensus       144 v~nev~f~~~~~f~~~~~kl~~------~~i~~f~lSpgp~~~~vAvyvPe~kGaP--a~vri~~~~~~~~~----~~~a  211 (566)
T KOG2315|consen  144 VSNEVQFYDLGSFKTIQHKLSV------SGITMLSLSPGPEPPFVAVYVPEKKGAP--ASVRIYKYPEEGQH----QPVA  211 (566)
T ss_pred             hcceEEEEecCCccceeeeeec------cceeeEEecCCCCCceEEEEccCCCCCC--cEEEEecccccccc----chhh
Confidence            3456788877642112233332      3567888888643  3333222112221  34567777633221    1121


Q ss_pred             c----CCCcccceeeCCCCCEEEEEEe---cCCCCC-CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          241 S----GSDFYAFPRMDPRGERMAWIEW---HHPNMP-WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       241 ~----~~~~~~~p~wSPDG~~la~~~~---~~~~~p-~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                      .    -.|. .+..|.+-|.-|..+..   |..+.. +....||++++++.    ...+-....    +-+.++.|+++|
T Consensus       212 ~ksFFkadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~----s~~V~L~k~----GPVhdv~W~~s~  282 (566)
T KOG2315|consen  212 NKSFFKADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE----SVSVPLLKE----GPVHDVTWSPSG  282 (566)
T ss_pred             hccccccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc----eEEEecCCC----CCceEEEECCCC
Confidence            1    1222 34679999998877653   443332 34678999999843    222222223    567899999999


Q ss_pred             c-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCC
Q 006979          313 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH  391 (623)
Q Consensus       313 ~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~  391 (623)
                      + +.++...  =-..+-.+|+...-.-.+..+..           +...|.   |.|+.+++..-.+-...+-++|..+ 
T Consensus       283 ~EF~VvyGf--MPAkvtifnlr~~~v~df~egpR-----------N~~~fn---p~g~ii~lAGFGNL~G~mEvwDv~n-  345 (566)
T KOG2315|consen  283 REFAVVYGF--MPAKVTIFNLRGKPVFDFPEGPR-----------NTAFFN---PHGNIILLAGFGNLPGDMEVWDVPN-  345 (566)
T ss_pred             CEEEEEEec--ccceEEEEcCCCCEeEeCCCCCc-----------cceEEC---CCCCEEEEeecCCCCCceEEEeccc-
Confidence            8 5555422  11245556665432222211110           122232   2677777766544445566667655 


Q ss_pred             ceeeccc---CCcceEeeeecCCEEEEEEec
Q 006979          392 SLSLLDI---PFTDIDNITLGNDCLFVEGAS  419 (623)
Q Consensus       392 ~~~~lt~---~~~~v~~~~~~~~~~~~~~~s  419 (623)
                       .+.|..   ....+..+++||..++....+
T Consensus       346 -~K~i~~~~a~~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  346 -RKLIAKFKAANTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             -hhhccccccCCceEEEEcCCCcEEEEEecc
Confidence             233333   233344557777766654433

>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]

Probab=95.18  E-value=2  Score=46.74  Aligned_cols=187  Identities=11%  Similarity=0.034  Sum_probs=94.8

Q ss_pred             CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc------------------eeeeEEEcCCCCCccc--
Q 006979          242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD------------------VYKRVCVAGFDPTIVE--  301 (623)
Q Consensus       242 ~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~------------------~~~~~~~~~~~~~~~~--  301 (623)
                      +-+.....-|-|||+++...-.|+++   ...+|.+++.+..-.                  +....+.+.....|..  
T Consensus       356 ~~EYI~Ragwtpdgkyvwvq~LdR~Q---~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~viyee~sd~winiH  432 (867)
T KOG2281|consen  356 DVEYIARAGWTPDGKYVWVQVLDRSQ---QRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVIYEEPSDGWINIH  432 (867)
T ss_pred             cceeeeeccccCCCcEEEEEEecCCc---ceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceEEecCCCceEEhh
Confidence            33455566799999987666667764   455666666543210                  0111122222213321  


Q ss_pred             cCcCceeCC--CCc--EEEEEeCCCCeeeEEEEecCC---CeEEEE------------eecccccccccccccCcceeEE
Q 006979          302 SPTEPKWSS--KGE--LFFVTDRKNGFWNLHKWIESN---NEVLAI------------YSLDAEFSRPLWVFGINSYEII  362 (623)
Q Consensus       302 ~~~~~~ws~--DG~--l~~~~~~~~g~~~L~~~d~~~---~~~~~l------------~~~~~~~~~~~w~~~~~~~~~l  362 (623)
                      .+..+-|-.  .+.  ++|.+.. .++.+||.+....   |....+            ..++....+-.|....+.=.+.
T Consensus       433 d~f~~~~~~~~e~~~~fi~asE~-~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSgeweVl~r~Gi~V  511 (867)
T KOG2281|consen  433 DIFHPLPQSTHEASYPFIWASEE-TGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGEWEVLARHGIWV  511 (867)
T ss_pred             hcccccccCCccceeeEEEeccc-ccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccceeehhhcCeee
Confidence            123334433  233  5566666 7788888764321   100000            0111122233444322221222


Q ss_pred             eecCCCCEEEEEEEECC--eEEEEEEeCC-CCceeecccCCcce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCC
Q 006979          363 QSHGEKNLIACSYRQNG--RSYLGILDDF-GHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (623)
Q Consensus       363 ~~s~~~~~l~~~~~~~g--~~~L~~~d~~-~~~~~~lt~~~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~  434 (623)
                      .  ...+.+||...+++  ..|||+.... .|+..+||.+.... ..++.+-+.++...++-..|+.+-.+.+...
T Consensus       512 d--E~~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~  585 (867)
T KOG2281|consen  512 D--EVRKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWP  585 (867)
T ss_pred             c--ccceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCC
Confidence            0  02345778777776  6789999987 78999998764322 2334444445555566666766555555443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.16  E-value=1.1  Score=47.13  Aligned_cols=127  Identities=17%  Similarity=0.106  Sum_probs=66.1

Q ss_pred             cEEEEeCCCCCCC---ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE-EcCCC-Ccc-cceec
Q 006979          166 RLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI-ALNGQ-NIQ-EPKVL  239 (623)
Q Consensus       166 ~l~~~d~~~g~~~---~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i-dl~~g-~~~-~~~~l  239 (623)
                      +|++++...++..   .+.+...    ......+.+.++|  |++ ...         ..|+++ |.++. ... ..+.|
T Consensus        48 rI~~l~d~dgdG~~d~~~vfa~~----l~~p~Gi~~~~~G--lyV-~~~---------~~i~~~~d~~gdg~ad~~~~~l  111 (367)
T TIGR02604        48 RILILEDADGDGKYDKSNVFAEE----LSMVTGLAVAVGG--VYV-ATP---------PDILFLRDKDGDDKADGEREVL  111 (367)
T ss_pred             EEEEEEcCCCCCCcceeEEeecC----CCCccceeEecCC--EEE-eCC---------CeEEEEeCCCCCCCCCCccEEE
Confidence            6777765332112   2333332    1223457788888  443 321         357766 44331 111 13334


Q ss_pred             ccC--------CCcccceeeCCCCCEEEEEEecCCCC----C--------CCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979          240 VSG--------SDFYAFPRMDPRGERMAWIEWHHPNM----P--------WDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (623)
Q Consensus       240 ~~~--------~~~~~~p~wSPDG~~la~~~~~~~~~----p--------~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~  299 (623)
                      ..+        ......+.|.|||+ |++...+..+.    |        .....+++++.+++    ...++...-   
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~----~~e~~a~G~---  183 (367)
T TIGR02604       112 LSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG----KLRVVAHGF---  183 (367)
T ss_pred             EEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCC----eEEEEecCc---
Confidence            322        12245688999996 87765321110    0        11346888887765    233444332   


Q ss_pred             cccCcCceeCCCCcEEEE
Q 006979          300 VESPTEPKWSSKGELFFV  317 (623)
Q Consensus       300 ~~~~~~~~ws~DG~l~~~  317 (623)
                       .......|+++|++++.
T Consensus       184 -rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       184 -QNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             -CCCccceECCCCCEEEE
Confidence             45568899999987654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.13  E-value=0.19  Score=57.35  Aligned_cols=219  Identities=12%  Similarity=0.128  Sum_probs=111.1

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecC--CceEEEeCCEEEEEeCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYG--GGAFRIFGDTVIFSNYKD  164 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g--~~~~~~s~d~l~f~~~~~  164 (623)
                      ..++..+.|.+ +..--=+=..+-|+|...||....-..+....++..     ...|.-.  +-.|....+.++-+...+
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-----~~~h~G~V~gLDfN~~q~nlLASGa~~  138 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT-----KSKHTGPVLGLDFNPFQGNLLASGADD  138 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh-----hcccCCceeeeeccccCCceeeccCCC
Confidence            34556777766 443111112234678877775443100122222211     1112111  233444444567777778


Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC-
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS-  243 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~-  243 (623)
                      |.|+++|++.   ..++.+.+.-.........+|...-.+|++...        ..+...+.|+...+  .+..+.... 
T Consensus       139 geI~iWDlnn---~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s--------~sg~~~iWDlr~~~--pii~ls~~~~  205 (1049)
T KOG0307|consen  139 GEILIWDLNK---PETPFTPGSQAPPSEIKCLSWNRKVSHILASGS--------PSGRAVIWDLRKKK--PIIKLSDTPG  205 (1049)
T ss_pred             CcEEEeccCC---cCCCCCCCCCCCcccceEeccchhhhHHhhccC--------CCCCceeccccCCC--cccccccCCC
Confidence            8999999974   234444421011112222334443334443222        22456677887653  133333222 


Q ss_pred             -CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCC
Q 006979          244 -DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK  321 (623)
Q Consensus       244 -~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~  321 (623)
                       .......|.||+..-+++..++.+    ...|-+.|+.-...  ..+++.+..    ..+-...|.+.+. +++.+-. 
T Consensus       206 ~~~~S~l~WhP~~aTql~~As~dd~----~PviqlWDlR~ass--P~k~~~~H~----~GilslsWc~~D~~lllSsgk-  274 (1049)
T KOG0307|consen  206 RMHCSVLAWHPDHATQLLVASGDDS----APVIQLWDLRFASS--PLKILEGHQ----RGILSLSWCPQDPRLLLSSGK-  274 (1049)
T ss_pred             ccceeeeeeCCCCceeeeeecCCCC----CceeEeecccccCC--chhhhcccc----cceeeeccCCCCchhhhcccC-
Confidence             235567899998777667655543    33355556543221  344445555    5677889999875 6555543 


Q ss_pred             CCeeeEEEEecCCCeE
Q 006979          322 NGFWNLHKWIESNNEV  337 (623)
Q Consensus       322 ~g~~~L~~~d~~~~~~  337 (623)
                        ..+++.+++.+++.
T Consensus       275 --D~~ii~wN~~tgEv  288 (1049)
T KOG0307|consen  275 --DNRIICWNPNTGEV  288 (1049)
T ss_pred             --CCCeeEecCCCceE
Confidence              23677788888763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.05  E-value=8.5  Score=45.46  Aligned_cols=61  Identities=8%  Similarity=0.001  Sum_probs=39.0

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE----EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEe
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI----ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW  263 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i----dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~  263 (623)
                      ...-++.+-+|...++++.++         ++|..+    +.++..   ...+..-..-....+||||+..|+++..
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~---------Gdi~~~~~~~~~~~~~---~E~VG~vd~GI~a~~WSPD~Ella~vT~  140 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALAS---------GDIILVREDPDPDEDE---IEIVGSVDSGILAASWSPDEELLALVTG  140 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECC---------ceEEEEEccCCCCCce---eEEEEEEcCcEEEEEECCCcCEEEEEeC
Confidence            345556677787777777654         567877    555544   3333222222445789999999998873

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.02  E-value=1.1  Score=43.08  Aligned_cols=181  Identities=9%  Similarity=0.060  Sum_probs=96.9

Q ss_pred             CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~  243 (623)
                      .|+|++++++.+ ...+.+..-  +-.....|.+||+.-.-++++..-.        +.|-+.|+.-.. .+++.+.+..
T Consensus        37 ~G~L~ile~~~~-~gi~e~~s~--d~~D~LfdV~Wse~~e~~~~~a~GD--------GSLrl~d~~~~s-~Pi~~~kEH~  104 (311)
T KOG0277|consen   37 NGRLFILEVTDP-KGIQECQSY--DTEDGLFDVAWSENHENQVIAASGD--------GSLRLFDLTMPS-KPIHKFKEHK  104 (311)
T ss_pred             CceEEEEecCCC-CCeEEEEee--ecccceeEeeecCCCcceEEEEecC--------ceEEEeccCCCC-cchhHHHhhh
Confidence            467888888532 122222111  0012345789999877777665432        557777743221 1122222222


Q ss_pred             CcccceeeCCCCCEEEEEE-ecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979          244 DFYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (623)
Q Consensus       244 ~~~~~p~wSPDG~~la~~~-~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~  322 (623)
                      .-+....|++--+++..++ ||.      ...||..+...     ....+.+..    .-+.+..|+|--.-+|.+-..+
T Consensus       105 ~EV~Svdwn~~~r~~~ltsSWD~------TiKLW~~~r~~-----Sv~Tf~gh~----~~Iy~a~~sp~~~nlfas~Sgd  169 (311)
T KOG0277|consen  105 REVYSVDWNTVRRRIFLTSSWDG------TIKLWDPNRPN-----SVQTFNGHN----SCIYQAAFSPHIPNLFASASGD  169 (311)
T ss_pred             hheEEeccccccceeEEeeccCC------ceEeecCCCCc-----ceEeecCCc----cEEEEEecCCCCCCeEEEccCC
Confidence            2344467988777766554 342      33455444322     234456655    5667899999755333444436


Q ss_pred             CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       323 g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      +.-+||-++.. |+...+.....++-.-.|..            -+..++++...++.-+.|
T Consensus       170 ~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~k------------y~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  170 GTLRLWDVRSP-GKFMSIEAHNSEILCCDWSK------------YNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             ceEEEEEecCC-CceeEEEeccceeEeecccc------------cCCcEEEecCCCceEEEE
Confidence            77788877654 44444544444444456653            345577766555544443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=94.99  E-value=5  Score=47.35  Aligned_cols=97  Identities=9%  Similarity=-0.018  Sum_probs=52.1

Q ss_pred             ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeE
Q 006979          248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL  327 (623)
Q Consensus       248 ~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L  327 (623)
                      ..+|-.||+++|....+...-  ....|.+++-++.     -.-..+.- +  +--....|-|.|.++...++..+...|
T Consensus       214 ~ISWRGDG~yFAVss~~~~~~--~~R~iRVy~ReG~-----L~stSE~v-~--gLe~~l~WrPsG~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  214 RISWRGDGEYFAVSSVEPETG--SRRVIRVYSREGE-----LQSTSEPV-D--GLEGALSWRPSGNLIASSQRLPDRHDV  283 (928)
T ss_pred             EEEECCCCcEEEEEEEEcCCC--ceeEEEEECCCce-----EEeccccC-C--CccCCccCCCCCCEEEEEEEcCCCcEE
Confidence            345999999988776533210  1355677766532     11111111 1  233578999999966666654555666


Q ss_pred             EEEecCCCeEEEEe----ecccccccccccc
Q 006979          328 HKWIESNNEVLAIY----SLDAEFSRPLWVF  354 (623)
Q Consensus       328 ~~~d~~~~~~~~l~----~~~~~~~~~~w~~  354 (623)
                      ..+...+-+-....    +.+..+....|..
T Consensus       284 vFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~  314 (928)
T PF04762_consen  284 VFFERNGLRHGEFTLRFDPEEEKVIELAWNS  314 (928)
T ss_pred             EEEecCCcEeeeEecCCCCCCceeeEEEECC
Confidence            66654442222221    2233445556665

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=94.95  E-value=0.17  Score=40.87  Aligned_cols=77  Identities=14%  Similarity=0.078  Sum_probs=49.5

Q ss_pred             ceeeCCCCCEEEEEEeccCCC---------CCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecC
Q 006979          195 DGIFDPRFNRYVTVREDRRQD---------ALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHH  265 (623)
Q Consensus       195 d~~~sPdG~~l~~v~~~~~~~---------~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~  265 (623)
                      |..+++++..|+|+.....-.         ...+.++|+.+|+.+++   .++|..+-.|.++.+.|||++.|++.+.. 
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~d~~~vlv~Et~-   77 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSPDESFVLVAETG-   77 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE---EEEEEEEESSEEEEEE-TTSSEEEEEEGG-
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe---EEEehhCCCccCeEEEcCCCCEEEEEecc-
Confidence            456677755666664432111         12356899999999998   78888888898999999999999988743 


Q ss_pred             CCCCCCceEEEEEEec
Q 006979          266 PNMPWDKAELWVGYIS  281 (623)
Q Consensus       266 ~~~p~~~~~L~v~d~~  281 (623)
                            ..+|..+-++
T Consensus        78 ------~~Ri~rywl~   87 (89)
T PF03088_consen   78 ------RYRILRYWLK   87 (89)
T ss_dssp             ------GTEEEEEESS
T ss_pred             ------CceEEEEEEe
Confidence                  3456655544

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK13613 lipoprotein LpqB; Provisional

Probab=94.94  E-value=1.1  Score=49.68  Aligned_cols=163  Identities=15%  Similarity=0.116  Sum_probs=87.4

Q ss_pred             eEEEeCC--EEEEEeCCCCcEEEEeCCCCCCC----ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 006979          149 AFRIFGD--TVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (623)
Q Consensus       149 ~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~----~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~  222 (623)
                      +.+++.+  .+++.......||+-.+..+ ..    .+.+..     ......|+|+++| +++.+ +.....    ...
T Consensus       367 s~avS~~g~~~A~v~~~~~~l~vg~~~~~-~~~~~~~~~~~~-----~~~Lt~PS~d~~g-~vWtv-d~~~~~----~~v  434 (599)
T PRK13613        367 RVAVSRDESRAAGISADGDSVYVGSLTPG-ASIGVHSWGVTA-----DGRLTSPSWDGRG-DLWVV-DRDPAD----PRL  434 (599)
T ss_pred             ceEEcCCCceEEEEcCCCcEEEEeccCCC-Cccccccceeec-----cCcccCCcCcCCC-CEEEe-cCCCCC----ceE
Confidence            4445444  56666544445776555433 12    122222     2356779999998 34433 211111    122


Q ss_pred             EEEEEcCCCCcccceeccc-C--CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC--CCc--eeeeEEEcCC
Q 006979          223 IVAIALNGQNIQEPKVLVS-G--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGD--VYKRVCVAGF  295 (623)
Q Consensus       223 L~~idl~~g~~~~~~~l~~-~--~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~--~~~--~~~~~~~~~~  295 (623)
                      |.++.. +|+   ...+.. .  ..-+...+.|+||.+++++....     ...+|++.-+..  .+.  +...+.+...
T Consensus       435 l~v~~~-~G~---~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~-----g~~~v~va~V~R~~~G~~~l~~~~~l~~~  505 (599)
T PRK13613        435 LWLLQG-DGE---PVEVRTPELDGHRVVAVRVARDGVRVALIVEKD-----GRRSLQIGRIVRDAKAVVSVEEFRSLAPE  505 (599)
T ss_pred             EEEEcC-CCc---EEEeeccccCCCEeEEEEECCCccEEEEEEecC-----CCcEEEEEEEEeCCCCcEEeeccEEeccC
Confidence            444443 454   222211 1  11355678999999999987432     245677665543  332  2222222222


Q ss_pred             CCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979          296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       296 ~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                      .    ..+.+..|..+++|+.+.....+...++.++.++..
T Consensus       506 l----~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~  542 (599)
T PRK13613        506 L----EDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGST  542 (599)
T ss_pred             C----CccceeEEcCCCEEEEEeccCCCCcceEEEecCCcC
Confidence            2    346788999999877755432456778888887654

>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.86  E-value=0.056  Score=51.70  Aligned_cols=86  Identities=16%  Similarity=0.157  Sum_probs=56.2

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC-
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK-  570 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~-  570 (623)
                      +.+.-++.+.|.|..+   ..|+.+...+.. -+.++.+.|+|-+.           +.+..-..|+.+.++.|...-. 
T Consensus         5 ~~~~~L~cfP~AGGsa---~~fr~W~~~lp~-~iel~avqlPGR~~-----------r~~ep~~~di~~Lad~la~el~~   69 (244)
T COG3208           5 GARLRLFCFPHAGGSA---SLFRSWSRRLPA-DIELLAVQLPGRGD-----------RFGEPLLTDIESLADELANELLP   69 (244)
T ss_pred             CCCceEEEecCCCCCH---HHHHHHHhhCCc-hhheeeecCCCccc-----------ccCCcccccHHHHHHHHHHHhcc
Confidence            4455577778876322   245555554433 58899999998432           1233345677777777766422 


Q ss_pred             CCC-CceEEEEcChHHHHHHHHh
Q 006979          571 ADE-KRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       571 ~d~-~rv~i~G~S~GG~~~~~~~  592 (623)
                      ..+ .-.+++||||||.++.-++
T Consensus        70 ~~~d~P~alfGHSmGa~lAfEvA   92 (244)
T COG3208          70 PLLDAPFALFGHSMGAMLAFEVA   92 (244)
T ss_pred             ccCCCCeeecccchhHHHHHHHH
Confidence            222 4799999999999998777

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=94.85  E-value=0.51  Score=48.99  Aligned_cols=146  Identities=8%  Similarity=0.004  Sum_probs=89.6

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      ...|+.+...|+.|+++++-+.   .+.|..-. .-..-+.+..|+++|..++-+.-|         ..|-..|+++|. 
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD---------~~lKlwDtETG~-  291 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYDD---RRCLRTFK-GHRKPVRDASFNNCGTSFLSASFD---------RFLKLWDTETGQ-  291 (503)
T ss_pred             eeeEEEecCCCceEEEEEEecC---cceehhhh-cchhhhhhhhccccCCeeeeeecc---------eeeeeeccccce-
Confidence            3478888888999999988642   22222110 002235678899999998877665         457788999997 


Q ss_pred             ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       234 ~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                        +..-........-..+.||+..++++...       ..+|..+|+..+.-      +-..+ .-.+.+....|-++|+
T Consensus       292 --~~~~f~~~~~~~cvkf~pd~~n~fl~G~s-------d~ki~~wDiRs~kv------vqeYd-~hLg~i~~i~F~~~g~  355 (503)
T KOG0282|consen  292 --VLSRFHLDKVPTCVKFHPDNQNIFLVGGS-------DKKIRQWDIRSGKV------VQEYD-RHLGAILDITFVDEGR  355 (503)
T ss_pred             --EEEEEecCCCceeeecCCCCCcEEEEecC-------CCcEEEEeccchHH------HHHHH-hhhhheeeeEEccCCc
Confidence              43333333333446799999888877643       34588888877631      11111 0014556788889997


Q ss_pred             -EEEEEeCCCCeeeEEEEe
Q 006979          314 -LFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       314 -l~~~~~~~~g~~~L~~~d  331 (623)
                       ++-.++  .+..++|-+.
T Consensus       356 rFissSD--dks~riWe~~  372 (503)
T KOG0282|consen  356 RFISSSD--DKSVRIWENR  372 (503)
T ss_pred             eEeeecc--CccEEEEEcC
Confidence             443344  3566666554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=94.84  E-value=4.1  Score=39.48  Aligned_cols=141  Identities=12%  Similarity=0.037  Sum_probs=80.6

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc--e--eeeEEEcCCC
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD--V--YKRVCVAGFD  296 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~--~--~~~~~~~~~~  296 (623)
                      +.+-+.|..+|+   ......-...+-...||++|..+++.. |+ .|- ..+.|.++|+.....  .  +....+.-.+
T Consensus        74 ~t~kLWDv~tGk---~la~~k~~~~Vk~~~F~~~gn~~l~~t-D~-~mg-~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~  147 (327)
T KOG0643|consen   74 QTAKLWDVETGK---QLATWKTNSPVKRVDFSFGGNLILAST-DK-QMG-YTCFVSVFDIRDDSSDIDSEEPYLKIPTPD  147 (327)
T ss_pred             ceeEEEEcCCCc---EEEEeecCCeeEEEeeccCCcEEEEEe-hh-hcC-cceEEEEEEccCChhhhcccCceEEecCCc
Confidence            456667888887   332222222334567999999888776 33 232 356688888764311  0  1122233222


Q ss_pred             CCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979          297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (623)
Q Consensus       297 ~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~  376 (623)
                          -.+....|+|-|+.++..+. +|  .|-.+|..+|+..  .....+..     ...+++.+.    .++..+++..
T Consensus       148 ----skit~a~Wg~l~~~ii~Ghe-~G--~is~~da~~g~~~--v~s~~~h~-----~~Ind~q~s----~d~T~FiT~s  209 (327)
T KOG0643|consen  148 ----SKITSALWGPLGETIIAGHE-DG--SISIYDARTGKEL--VDSDEEHS-----SKINDLQFS----RDRTYFITGS  209 (327)
T ss_pred             ----cceeeeeecccCCEEEEecC-CC--cEEEEEcccCcee--eechhhhc-----ccccccccc----CCcceEEecc
Confidence                35678899999985555554 45  4666787776422  11111111     133455555    5677888888


Q ss_pred             ECCeEEEEE
Q 006979          377 QNGRSYLGI  385 (623)
Q Consensus       377 ~~g~~~L~~  385 (623)
                      .+....|+-
T Consensus       210 ~Dttakl~D  218 (327)
T KOG0643|consen  210 KDTTAKLVD  218 (327)
T ss_pred             cCccceeee
Confidence            888887753

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.77  E-value=0.43  Score=48.66  Aligned_cols=92  Identities=12%  Similarity=-0.017  Sum_probs=52.8

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE-cCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA-LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (623)
Q Consensus       195 d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id-l~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~  273 (623)
                      -.++++||..++....|         ..|.+++ +.-..   +........-+....|||||+.|+++..+         
T Consensus       149 ~vaf~~~gs~latgg~d---------g~lRv~~~Ps~~t---~l~e~~~~~eV~DL~FS~dgk~lasig~d---------  207 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTD---------GTLRVWEWPSMLT---ILEEIAHHAEVKDLDFSPDGKFLASIGAD---------  207 (398)
T ss_pred             EEEEcCCCCEeeecccc---------ceEEEEecCcchh---hhhhHhhcCccccceeCCCCcEEEEecCC---------
Confidence            46688888877765443         4566777 32221   11111122234457799999999999744         


Q ss_pred             EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                      ...+++.+++..   ....++.+.+  +.....+|+.|+
T Consensus       208 ~~~VW~~~~g~~---~a~~t~~~k~--~~~~~cRF~~d~  241 (398)
T KOG0771|consen  208 SARVWSVNTGAA---LARKTPFSKD--EMFSSCRFSVDN  241 (398)
T ss_pred             ceEEEEeccCch---hhhcCCcccc--hhhhhceecccC
Confidence            255667776632   1112222223  566777888877

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=94.76  E-value=1.6  Score=48.52  Aligned_cols=198  Identities=13%  Similarity=0.139  Sum_probs=104.3

Q ss_pred             EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      |.-....|++++...-.|-+..|.++  +++.+-.. ...|    ...+.+--++-++|...        ....|-+.-|
T Consensus      1032 fDC~e~mvyWtDv~g~SI~rasL~G~--Ep~ti~n~~L~SP----EGiAVDh~~Rn~ywtDS--------~lD~IevA~L 1097 (1289)
T KOG1214|consen 1032 FDCRERMVYWTDVAGRSISRASLEGA--EPETIVNSGLISP----EGIAVDHIRRNMYWTDS--------VLDKIEVALL 1097 (1289)
T ss_pred             cccccceEEEeecCCCccccccccCC--CCceeecccCCCc----cceeeeeccceeeeecc--------ccchhheeec
Confidence            33334467888766656777777755  44433321 0000    11222223344444322        1234555556


Q ss_pred             CCCCcccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979          229 NGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (623)
Q Consensus       229 ~~g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
                      ++..   .+.|... --........|=++.|||..|++.     +..|-..++++.    +++++...+ -  .-.....
T Consensus      1098 dG~~---rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe-----nPkIets~mDG~----NrRilin~D-i--gLPNGLt 1162 (1289)
T KOG1214|consen 1098 DGSE---RKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE-----NPKIETSSMDGE----NRRILINTD-I--GLPNGLT 1162 (1289)
T ss_pred             CCce---eeEEEeecccCcceEEeecccCceeecccccc-----CCcceeeccCCc----cceEEeecc-c--CCCCCce
Confidence            6654   4445432 211223447788899999999885     445777788876    455555444 1  3445777


Q ss_pred             eCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       308 ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                      +.|..+++...|.  |..+|-.+.+++...|.+...      ..     -.|.+..   +++.+|++..++  ..+..++
T Consensus      1163 fdpfs~~LCWvDA--Gt~rleC~~p~g~gRR~i~~~------Lq-----YPF~its---y~~~fY~TDWk~--n~vvsv~ 1224 (1289)
T KOG1214|consen 1163 FDPFSKLLCWVDA--GTKRLECTLPDGTGRRVIQNN------LQ-----YPFSITS---YADHFYHTDWKR--NGVVSVN 1224 (1289)
T ss_pred             eCcccceeeEEec--CCcceeEecCCCCcchhhhhc------cc-----Cceeeee---ccccceeecccc--CceEEee
Confidence            8887775544554  666777666655444433311      11     1122222   556688876543  3455566


Q ss_pred             CCCCcee
Q 006979          388 DFGHSLS  394 (623)
Q Consensus       388 ~~~~~~~  394 (623)
                      ..+++.+
T Consensus      1225 ~~~~~~t 1231 (1289)
T KOG1214|consen 1225 KHSGQFT 1231 (1289)
T ss_pred             ccccccc
Confidence            6555443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=94.71  E-value=1  Score=44.45  Aligned_cols=106  Identities=15%  Similarity=0.118  Sum_probs=67.9

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCC-CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~-~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~  234 (623)
                      .|+|.....|+|-++|+..... .+..+...    ....+-.++.-+|..|+-.+...        +-|.+.|..+|+. 
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH----~s~Iacv~Ln~~Gt~vATaStkG--------TLIRIFdt~~g~~-  216 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAH----DSDIACVALNLQGTLVATASTKG--------TLIRIFDTEDGTL-  216 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCCceEEEcc----cCceeEEEEcCCccEEEEeccCc--------EEEEEEEcCCCcE-
Confidence            6889988889999999975301 12223221    22344567888998776655432        4466778887762 


Q ss_pred             cceecccCCCc--ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC
Q 006979          235 EPKVLVSGSDF--YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN  283 (623)
Q Consensus       235 ~~~~l~~~~~~--~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~  283 (623)
                       +..+-.|.+.  ....+||||+++||..+ |       +..|++..+...
T Consensus       217 -l~E~RRG~d~A~iy~iaFSp~~s~LavsS-d-------KgTlHiF~l~~~  258 (346)
T KOG2111|consen  217 -LQELRRGVDRADIYCIAFSPNSSWLAVSS-D-------KGTLHIFSLRDT  258 (346)
T ss_pred             -eeeeecCCchheEEEEEeCCCccEEEEEc-C-------CCeEEEEEeecC
Confidence             3334444322  33478999999999776 3       456999888754

>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised

Probab=94.70  E-value=0.38  Score=49.01  Aligned_cols=139  Identities=9%  Similarity=0.038  Sum_probs=83.2

Q ss_pred             CCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECCCCCC
Q 006979          458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       458 ~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      ++.-+.+.+..  ++...- -+|.|...      +++.-+||++||-......+ ......+.|.++|+.++.+..+.--
T Consensus        59 lp~~e~~~L~~--~~~~fl-aL~~~~~~------~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~  129 (310)
T PF12048_consen   59 LPADEVQWLQA--GEERFL-ALWRPANS------AKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPA  129 (310)
T ss_pred             CCHhhcEEeec--CCEEEE-EEEecccC------CCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcc
Confidence            33344455544  455555 45566541      55677999999974443332 3446788899999999998877510


Q ss_pred             CC-chhHHH----------------------------hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHH
Q 006979          537 GY-GREFRE----------------------------RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT  587 (623)
Q Consensus       537 ~~-g~~~~~----------------------------~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~  587 (623)
                      .- -..+..                            .....+-.....-+.+++.++.+++   ..+|+|+|+..|+++
T Consensus       130 ~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~  206 (310)
T PF12048_consen  130 PPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGW  206 (310)
T ss_pred             cccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHH
Confidence            00 000000                            0000111122344567777887776   346999999999999


Q ss_pred             HHHHh-cC-CCceeEEEecccCC
Q 006979          588 TLAAL-AF-RDTFKAGASLYGVS  608 (623)
Q Consensus       588 ~~~~~-~~-~~~f~a~v~~~g~~  608 (623)
                      ++.++ .. +....+.|.+.+..
T Consensus       207 ~~~~la~~~~~~~daLV~I~a~~  229 (310)
T PF12048_consen  207 AARYLAEKPPPMPDALVLINAYW  229 (310)
T ss_pred             HHHHHhcCCCcccCeEEEEeCCC
Confidence            99888 44 33466777776643

This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=94.69  E-value=4.8  Score=39.62  Aligned_cols=127  Identities=9%  Similarity=-0.028  Sum_probs=72.5

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      ..+++...|.+++.+|..+| ...++....    ....+...-+.-|-.+++..++.        .++-+.|.....   
T Consensus       103 s~i~S~gtDk~v~~wD~~tG-~~~rk~k~h----~~~vNs~~p~rrg~~lv~SgsdD--------~t~kl~D~R~k~---  166 (338)
T KOG0265|consen  103 SHILSCGTDKTVRGWDAETG-KRIRKHKGH----TSFVNSLDPSRRGPQLVCSGSDD--------GTLKLWDIRKKE---  166 (338)
T ss_pred             CEEEEecCCceEEEEecccc-eeeehhccc----cceeeecCccccCCeEEEecCCC--------ceEEEEeecccc---
Confidence            67778778888999999988 444554432    22334333334566677766544        567888887654   


Q ss_pred             ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      ...+....--.....|.-++..+.--..|        .+|-+.|+..+.   ..-++.|..    ..+....-+++|.
T Consensus       167 ~~~t~~~kyqltAv~f~d~s~qv~sggId--------n~ikvWd~r~~d---~~~~lsGh~----DtIt~lsls~~gs  229 (338)
T KOG0265|consen  167 AIKTFENKYQLTAVGFKDTSDQVISGGID--------NDIKVWDLRKND---GLYTLSGHA----DTITGLSLSRYGS  229 (338)
T ss_pred             hhhccccceeEEEEEecccccceeecccc--------CceeeeccccCc---ceEEeeccc----CceeeEEeccCCC
Confidence            22232222112335677777766433323        225555664442   233455544    3556677788886

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=94.63  E-value=4.6  Score=42.62  Aligned_cols=126  Identities=11%  Similarity=-0.007  Sum_probs=76.5

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCc--eeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          195 DGIFDPRFNRYVTVREDRRQDALNS--TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       195 d~~~sPdG~~l~~v~~~~~~~~~~~--~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      .+.|.+.|++|++....+....+..  .+.||++++....   .++...-.+.+-...|+|++++.+.+..-.+      
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p------  297 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEPLSSRFAVISGYMP------  297 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecccCCceeEEecccc------
Confidence            3679999999999877664211122  2789999987654   3333222333445679999999998873332      


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEE
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI  340 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l  340 (623)
                      ..+.+.|+.++    .+-.++..      --..+.|+|.++.+.++..++-+.++..+|+.+. ...+
T Consensus       298 a~~s~~~lr~N----l~~~~Pe~------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r-f~~~  354 (561)
T COG5354         298 ASVSVFDLRGN----LRFYFPEQ------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR-FKVA  354 (561)
T ss_pred             cceeecccccc----eEEecCCc------ccccccccCcccEEEEecCCccccceEEeccCCc-eEEE
Confidence            23666777655    22223322      2247789999984444443244567777887554 3334

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.63  E-value=4.9  Score=39.40  Aligned_cols=205  Identities=14%  Similarity=0.171  Sum_probs=88.3

Q ss_pred             ecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEE
Q 006979          238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV  317 (623)
Q Consensus       238 ~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~  317 (623)
                      .|..-.+-.++.+|.||.++|+.+. |++      ..|+.++.++  .+-.+.-+.+..     ....+.+..+|+++..
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~-d~~------~~i~els~~G--~vlr~i~l~g~~-----D~EgI~y~g~~~~vl~   81 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQ-DEP------GEIYELSLDG--KVLRRIPLDGFG-----DYEGITYLGNGRYVLS   81 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEE-TTT------TEEEEEETT----EEEEEE-SS-S-----SEEEEEE-STTEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEE-CCC------CEEEEEcCCC--CEEEEEeCCCCC-----CceeEEEECCCEEEEE
Confidence            3443333467889999999988776 654      3477777653  322233344422     3346778777754444


Q ss_pred             EeCCCCeeeEEEEec--CCCe--EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC--CCC
Q 006979          318 TDRKNGFWNLHKWIE--SNNE--VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD--FGH  391 (623)
Q Consensus       318 ~~~~~g~~~L~~~d~--~~~~--~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~--~~~  391 (623)
                      ..+ .+  .|+.++.  .+..  ...+..-.  ...+  ..+...+.=+.+++.++.|++.- +.....||.++.  ...
T Consensus        82 ~Er-~~--~L~~~~~~~~~~~~~~~~~~~~~--l~~~--~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~  153 (248)
T PF06977_consen   82 EER-DQ--RLYIFTIDDDTTSLDRADVQKIS--LGFP--NKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGF  153 (248)
T ss_dssp             ETT-TT--EEEEEEE----TT--EEEEEEEE-----S-----SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS
T ss_pred             EcC-CC--cEEEEEEeccccccchhhceEEe--cccc--cCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCcc
Confidence            433 33  5665554  2222  11111100  0000  01111222222233677787764 455567888875  222


Q ss_pred             ceeec-----cc---CCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCCCccCCCCCCCc
Q 006979          392 SLSLL-----DI---PFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLP  461 (623)
Q Consensus       392 ~~~~l-----t~---~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~  461 (623)
                      .....     ..   ...+++++  ++..+.++++..   ....|..+|.++.-+..    ..+.... ..+ ...+++|
T Consensus       154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~---es~~l~~~d~~G~~~~~----~~L~~g~-~gl-~~~~~Qp  224 (248)
T PF06977_consen  154 DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSD---ESRLLLELDRQGRVVSS----LSLDRGF-HGL-SKDIPQP  224 (248)
T ss_dssp             --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEET---TTTEEEEE-TT--EEEE----EE-STTG-GG--SS---SE
T ss_pred             ceeeccccccccccceeccccceEEcCCCCeEEEEEC---CCCeEEEECCCCCEEEE----EEeCCcc-cCc-ccccCCc
Confidence            22211     10   01123444  667778888753   23567888854442221    1222211 011 2567899


Q ss_pred             EEEEeecCCCCeEEE
Q 006979          462 ELIEFPTEVPGQKAY  476 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~  476 (623)
                      |-|.+..  +| .|+
T Consensus       225 EGIa~d~--~G-~LY  236 (248)
T PF06977_consen  225 EGIAFDP--DG-NLY  236 (248)
T ss_dssp             EEEEE-T--T---EE
T ss_pred             cEEEECC--CC-CEE
Confidence            9999975  45 344

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.61  E-value=8.5  Score=42.08  Aligned_cols=53  Identities=15%  Similarity=0.132  Sum_probs=28.8

Q ss_pred             eEEEEEEeCCCCcee-ecccC---------Ccce-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          380 RSYLGILDDFGHSLS-LLDIP---------FTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       380 ~~~L~~~d~~~~~~~-~lt~~---------~~~v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ...|+.+|+.+|+.. +...+         .... ..+...++.+|+ ++.   ...||.+|.++|++
T Consensus       365 ~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~-g~~---dG~l~ald~~tG~~  428 (488)
T cd00216         365 KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA-GAA---DGYFRAFDATTGKE  428 (488)
T ss_pred             ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE-ECC---CCeEEEEECCCCce
Confidence            356888888887653 11111         0011 122334554444 332   35799999999873

The alignment model contains an 8-bladed beta-propeller.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=94.58  E-value=0.3  Score=50.89  Aligned_cols=96  Identities=11%  Similarity=0.060  Sum_probs=58.4

Q ss_pred             eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      +..+.+..++......|+.+++|..+.  ....+...    ....+-.+++|||.+++.-+.|+       .-.||+++.
T Consensus       412 ~~~fhpsg~va~Gt~~G~w~V~d~e~~--~lv~~~~d----~~~ls~v~ysp~G~~lAvgs~d~-------~iyiy~Vs~  478 (626)
T KOG2106|consen  412 CADFHPSGVVAVGTATGRWFVLDTETQ--DLVTIHTD----NEQLSVVRYSPDGAFLAVGSHDN-------HIYIYRVSA  478 (626)
T ss_pred             EeeccCcceEEEeeccceEEEEecccc--eeEEEEec----CCceEEEEEcCCCCEEEEecCCC-------eEEEEEECC
Confidence            333333335556667788888888654  22222221    23345578999999988765542       256777777


Q ss_pred             CCCCcccceecc--cCCCcccceeeCCCCCEEEEE
Q 006979          229 NGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWI  261 (623)
Q Consensus       229 ~~g~~~~~~~l~--~~~~~~~~p~wSPDG~~la~~  261 (623)
                      ++..   ...+-  .+ .+.....||+|+++|.-.
T Consensus       479 ~g~~---y~r~~k~~g-s~ithLDwS~Ds~~~~~~  509 (626)
T KOG2106|consen  479 NGRK---YSRVGKCSG-SPITHLDWSSDSQFLVSN  509 (626)
T ss_pred             CCcE---EEEeeeecC-ceeEEeeecCCCceEEec
Confidence            6654   33321  23 566778899999976533

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=94.57  E-value=6.6  Score=40.62  Aligned_cols=199  Identities=13%  Similarity=0.173  Sum_probs=95.8

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~  271 (623)
                      ...+..++|+-..++-...+.       .-.+|.+.+.+.    +..+....+-+......|.|.||.+.+.+.      
T Consensus       263 ki~~v~~~~~~~~v~~aSad~-------~i~vws~~~~s~----~~~~~~h~~~V~~ls~h~tgeYllsAs~d~------  325 (506)
T KOG0289|consen  263 KITSVKFHKDLDTVITASADE-------IIRVWSVPLSSE----PTSSRPHEEPVTGLSLHPTGEYLLSASNDG------  325 (506)
T ss_pred             EEEEEEeccchhheeecCCcc-------eEEeeccccccC----ccccccccccceeeeeccCCcEEEEecCCc------
Confidence            345667788775544332221       133444443332    222222233455667899999988876322      


Q ss_pred             ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccccccc
Q 006979          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL  351 (623)
Q Consensus       272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~  351 (623)
                        .....|+..+..   ..+......+  ..+...++.||| ++|.....++.-.  .+|+.++.  .+...... .++ 
T Consensus       326 --~w~Fsd~~~g~~---lt~vs~~~s~--v~~ts~~fHpDg-Lifgtgt~d~~vk--iwdlks~~--~~a~Fpgh-t~~-  391 (506)
T KOG0289|consen  326 --TWAFSDISSGSQ---LTVVSDETSD--VEYTSAAFHPDG-LIFGTGTPDGVVK--IWDLKSQT--NVAKFPGH-TGP-  391 (506)
T ss_pred             --eEEEEEccCCcE---EEEEeecccc--ceeEEeeEcCCc-eEEeccCCCceEE--EEEcCCcc--ccccCCCC-CCc-
Confidence              234446666532   2222221101  456788999999 6666654345444  45555543  22221111 111 


Q ss_pred             ccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC-CceeecccCC-cceEee--eecCCEEEEEEecCCCCCeEE
Q 006979          352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-HSLSLLDIPF-TDIDNI--TLGNDCLFVEGASGVEPSSVA  427 (623)
Q Consensus       352 w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~-~~~~~lt~~~-~~v~~~--~~~~~~~~~~~~s~~~~~~ly  427 (623)
                          .....|.    ++++.+.+..+++...||  |+.. ...+.+..+. -.+..+  +..|.++...+    ..-.+|
T Consensus       392 ----vk~i~Fs----ENGY~Lat~add~~V~lw--DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g----~~l~Vy  457 (506)
T KOG0289|consen  392 ----VKAISFS----ENGYWLATAADDGSVKLW--DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG----SDLQVY  457 (506)
T ss_pred             ----eeEEEec----cCceEEEEEecCCeEEEE--EehhhcccceeeccccccceeEEEcCCCCeEEeec----ceeEEE
Confidence                1233444    677766666677765554  5432 2333333332 124444  44454444332    223566


Q ss_pred             EEEcCCCc
Q 006979          428 KVTLDDHK  435 (623)
Q Consensus       428 ~~~l~~~~  435 (623)
                      .++-.+..
T Consensus       458 ~~~k~~k~  465 (506)
T KOG0289|consen  458 ICKKKTKS  465 (506)
T ss_pred             EEeccccc
Confidence            66544444

>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.54  E-value=0.092  Score=57.86  Aligned_cols=74  Identities=16%  Similarity=0.355  Sum_probs=48.5

Q ss_pred             cCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC--C--CCC---CCceEEEEcChHHHHHHHHhcC
Q 006979          522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS--G--KAD---EKRLCITGGSAGGYTTLAALAF  594 (623)
Q Consensus       522 ~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~--~--~~d---~~rv~i~G~S~GG~~~~~~~~~  594 (623)
                      ..-|..+++|+-+      ++. +.+|+.-....+=+..|++++.++  +  .-+   |.-|.++||||||.++.+++++
T Consensus       130 ~~~~DFFaVDFnE------e~t-Am~G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl  202 (973)
T KOG3724|consen  130 PFSFDFFAVDFNE------EFT-AMHGHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL  202 (973)
T ss_pred             ccccceEEEcccc------hhh-hhccHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh
Confidence            3456777888654      221 233333333455677888887663  2  334   6779999999999999999987


Q ss_pred             CCceeEEE
Q 006979          595 RDTFKAGA  602 (623)
Q Consensus       595 ~~~f~a~v  602 (623)
                      ++..+..|
T Consensus       203 kn~~~~sV  210 (973)
T KOG3724|consen  203 KNEVQGSV  210 (973)
T ss_pred             hhhccchh
Confidence            76555544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.53  E-value=6.5  Score=40.46  Aligned_cols=130  Identities=10%  Similarity=0.059  Sum_probs=71.5

Q ss_pred             eEEE-eCCEEEEEeCCC------CcEEEEeCCCCCCCceec--CCCC-------C--CCCeeecceeeCCCCCEEEEEEe
Q 006979          149 AFRI-FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPI--TPDY-------G--EPLVSYADGIFDPRFNRYVTVRE  210 (623)
Q Consensus       149 ~~~~-s~d~l~f~~~~~------~~l~~~d~~~g~~~~~~L--t~~~-------~--~~~~~~~d~~~sPdG~~l~~v~~  210 (623)
                      +++. .++.++++.+..      ..|+.++.++.  ..+.+  ....       .  ....-+...+++|||+.|+.+.+
T Consensus        89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~--~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGR--VIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             HeEEecCCCEEEEeCCccCCCCCCEEEEECCCCc--ccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            4444 444777777777      78999998743  22333  2110       0  01112456889999998888877


Q ss_pred             ccCCCCC-------CceeEEEEEEcCC-CCccccee----ccc-----CCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979          211 DRRQDAL-------NSTTEIVAIALNG-QNIQEPKV----LVS-----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (623)
Q Consensus       211 ~~~~~~~-------~~~~~L~~idl~~-g~~~~~~~----l~~-----~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~  273 (623)
                      ..-..+.       .....|+.+|..+ +..  ..+    +..     ...-.....+-|||+ |+.++.+...---...
T Consensus       167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~  243 (326)
T PF13449_consen  167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYK  243 (326)
T ss_pred             ccccCCCcccccccCceEEEEEecCCCCCcc--ceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceE
Confidence            5421111       1236788899876 321  111    111     112234456888988 5556533211011356


Q ss_pred             EEEEEEecCC
Q 006979          274 ELWVGYISEN  283 (623)
Q Consensus       274 ~L~v~d~~~~  283 (623)
                      +||.+++...
T Consensus       244 ri~~v~l~~a  253 (326)
T PF13449_consen  244 RIYRVDLSDA  253 (326)
T ss_pred             EEEEEEcccc
Confidence            7888887643

>PLN03016 sinapoylglucose-malate O-sinapoyltransferase

Probab=94.50  E-value=0.11  Score=55.34  Aligned_cols=132  Identities=17%  Similarity=0.192  Sum_probs=78.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-------c--------------CCHHhHHHHcCceEEEE
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-------I--------------LNLSIQYWTSRGWAFVD  529 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-------~--------------~~~~~~~~a~~G~~v~~  529 (623)
                      .+..+..|++...+.      .+..|+|+++.|||+.....       .              +.....-|.+. ..++-
T Consensus        48 ~~~~lfy~f~es~~~------~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~-anllf  120 (433)
T PLN03016         48 ENVQFFYYFIKSENN------PKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKM-ANIIF  120 (433)
T ss_pred             CCeEEEEEEEecCCC------cccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhc-CcEEE
Confidence            456788788876541      35679999999998644311       0              01122234443 57888


Q ss_pred             ECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh-c---CC-------C
Q 006979          530 VNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL-A---FR-------D  596 (623)
Q Consensus       530 ~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~---~~-------~  596 (623)
                      +|.+-+.||...  +........ ..++|+..++. |+.+.+..-...+.|.|-||||..+-.++ .   ..       =
T Consensus       121 iDqPvGtGfSy~--~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~i  198 (433)
T PLN03016        121 LDQPVGSGFSYS--KTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPI  198 (433)
T ss_pred             ecCCCCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcc
Confidence            886655555321  111111111 12345555544 55555655567899999999998665554 1   11       1


Q ss_pred             ceeEEEecccCCCHH
Q 006979          597 TFKAGASLYGVSIPV  611 (623)
Q Consensus       597 ~f~a~v~~~g~~d~~  611 (623)
                      -+++++...|.+|..
T Consensus       199 nLkGi~iGNg~t~~~  213 (433)
T PLN03016        199 NLQGYMLGNPVTYMD  213 (433)
T ss_pred             cceeeEecCCCcCch
Confidence            578999999988764

>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=94.50  E-value=0.29  Score=51.56  Aligned_cols=115  Identities=12%  Similarity=0.053  Sum_probs=77.1

Q ss_pred             CCEEEEecCCCCCcccCcC----C-HHhHHHHcCceEEEEECCCCCCCCchhHH------HhhccCCccchHHHHHHHHH
Q 006979          495 PPLLVKSHGGPTSEARGIL----N-LSIQYWTSRGWAFVDVNYGGSTGYGREFR------ERLLGRWGIVDVNDCCSCAT  563 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~----~-~~~~~~a~~G~~v~~~d~rGs~~~g~~~~------~~~~~~~g~~~~~D~~~~~~  563 (623)
                      -|..|++-|-  +.....+    . .+.++-.+.|-.|+..++|-   ||+...      ..++.---.+...|+...|+
T Consensus        86 gPiFLmIGGE--gp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~~st~nlk~LSs~QALaDla~fI~  160 (514)
T KOG2182|consen   86 GPIFLMIGGE--GPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGDLSTSNLKYLSSLQALADLAEFIK  160 (514)
T ss_pred             CceEEEEcCC--CCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCCCcccchhhhhHHHHHHHHHHHHH
Confidence            4788888554  3333222    2 34444456799999999997   343211      01111112345788888888


Q ss_pred             HHHhC-CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC----CCHHHhh
Q 006979          564 FLVGS-GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV----SIPVIIS  614 (623)
Q Consensus       564 ~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~----~d~~~~~  614 (623)
                      .+..+ +.-|+.+...+|+||-|.++.+.= .+|++..++|+.+++    +|..+|.
T Consensus       161 ~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~A~~DF~EY~  217 (514)
T KOG2182|consen  161 AMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVLAKVDFYEYL  217 (514)
T ss_pred             HHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccceeEEecHHHHH
Confidence            88665 456667999999999999999987 899998888887775    4666653

>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]

Probab=94.48  E-value=0.2  Score=54.29  Aligned_cols=132  Identities=17%  Similarity=0.181  Sum_probs=87.2

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC--HHhHHHHcCceEEEEECCCCCCCCc---hhHH--Hhh
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--LSIQYWTSRGWAFVDVNYGGSTGYG---REFR--ERL  546 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~--~~~~~~a~~G~~v~~~d~rGs~~~g---~~~~--~~~  546 (623)
                      .|...+++|.+  +    +++   ++.+=||..........  .....-..+||+++.-|--..+.-+   ..|.  ...
T Consensus        16 ~i~fev~LP~~--W----NgR---~~~~GgGG~~G~i~~~~~~~~~~~~~~~G~A~~~TD~Gh~~~~~~~~~~~~~n~~~   86 (474)
T PF07519_consen   16 NIRFEVWLPDN--W----NGR---FLQVGGGGFAGGINYADGKASMATALARGYATASTDSGHQGSAGSDDASFGNNPEA   86 (474)
T ss_pred             eEEEEEECChh--h----ccC---eEEECCCeeeCcccccccccccchhhhcCeEEEEecCCCCCCcccccccccCCHHH
Confidence            67777888875  3    233   44443332222111111  1134456889999999954322211   1121  112


Q ss_pred             ccCCccchHHHHHHHHHHHHhCCC-CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979          547 LGRWGIVDVNDCCSCATFLVGSGK-ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       547 ~~~~g~~~~~D~~~~~~~l~~~~~-~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~  614 (623)
                      ..+|+...+.+...+.+.|+++-+ -.|++-.-.|.|-||-..|.++ ++|+.|.++++.+|..++..+.
T Consensus        87 ~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~~~~  156 (474)
T PF07519_consen   87 LLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWTHLQ  156 (474)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHHHHH
Confidence            345676777788888888887533 4678999999999999999999 8999999999999999987653

It also includes several bacterial homologues of unknown function.

>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]

Probab=94.48  E-value=0.16  Score=47.37  Aligned_cols=40  Identities=23%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             CCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          570 KADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       570 ~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      -++++||+|-|+|+||.++++++ +++....+.+..+|+.-
T Consensus        89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p  129 (206)
T KOG2112|consen   89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLP  129 (206)
T ss_pred             CCCccceeEcccCchHHHHHHHHhccccccceeeccccccc
Confidence            37899999999999999999999 78766677777777654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=94.39  E-value=0.71  Score=50.13  Aligned_cols=118  Identities=12%  Similarity=0.050  Sum_probs=65.9

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~  273 (623)
                      ...+.||+|+.++-.+.....    ....|++.+..+=.  +...|....--+.+..|||||++|+-++.|+      ..
T Consensus       529 ~~l~~s~~gnliASaCKS~~~----ehAvI~lw~t~~W~--~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR------t~  596 (764)
T KOG1063|consen  529 YALAISPTGNLIASACKSSLK----EHAVIRLWNTANWL--QVQELEGHSLTVTRLAFSPDGRYLLSVSRDR------TV  596 (764)
T ss_pred             EEEEecCCCCEEeehhhhCCc----cceEEEEEeccchh--hhheecccceEEEEEEECCCCcEEEEeecCc------eE
Confidence            467789999977765543211    12667777765522  1344544333466789999999999887665      23


Q ss_pred             EEEEEEecCCCceeeeE--EEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEe
Q 006979          274 ELWVGYISENGDVYKRV--CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       274 ~L~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d  331 (623)
                      .||-.  ..+.. ...+  .+....    ..+-...|+||++.++.+.+ +..-.+|...
T Consensus       597 sl~~~--~~~~~-~e~~fa~~k~Ht----RIIWdcsW~pde~~FaTaSR-DK~VkVW~~~  648 (764)
T KOG1063|consen  597 SLYEV--QEDIK-DEFRFACLKAHT----RIIWDCSWSPDEKYFATASR-DKKVKVWEEP  648 (764)
T ss_pred             Eeeee--ecccc-hhhhhccccccc----eEEEEcccCcccceeEEecC-CceEEEEecc
Confidence            35543  22110 0111  111111    34456679999965445555 4455566553

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=94.37  E-value=0.47  Score=49.46  Aligned_cols=145  Identities=8%  Similarity=-0.008  Sum_probs=89.6

Q ss_pred             ccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCC
Q 006979           86 GASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKD  164 (623)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~  164 (623)
                      .++...-.+..+|+..|-|.---   +|...+|-....   .....+..        |.-|..++.+++| .-+++...|
T Consensus       507 ssapaCyALa~spDakvcFsccs---dGnI~vwDLhnq---~~VrqfqG--------htDGascIdis~dGtklWTGGlD  572 (705)
T KOG0639|consen  507 SSAPACYALAISPDAKVCFSCCS---DGNIAVWDLHNQ---TLVRQFQG--------HTDGASCIDISKDGTKLWTGGLD  572 (705)
T ss_pred             CcchhhhhhhcCCccceeeeecc---CCcEEEEEcccc---eeeecccC--------CCCCceeEEecCCCceeecCCCc
Confidence            33455566777776666665433   477777765543   12222221        2345678888866 667888888


Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~  244 (623)
                      +.+.-+|+.++    +++...  +-........++|+|.+|+.-+++         ++++++...+.+   .-+|.-...
T Consensus       573 ntvRcWDlreg----rqlqqh--dF~SQIfSLg~cP~~dWlavGMen---------s~vevlh~skp~---kyqlhlheS  634 (705)
T KOG0639|consen  573 NTVRCWDLREG----RQLQQH--DFSSQIFSLGYCPTGDWLAVGMEN---------SNVEVLHTSKPE---KYQLHLHES  634 (705)
T ss_pred             cceeehhhhhh----hhhhhh--hhhhhheecccCCCccceeeeccc---------CcEEEEecCCcc---ceeeccccc
Confidence            88999999865    333321  001233456689999999998875         456777665544   344544444


Q ss_pred             cccceeeCCCCCEEEEEE
Q 006979          245 FYAFPRMDPRGERMAWIE  262 (623)
Q Consensus       245 ~~~~p~wSPDG~~la~~~  262 (623)
                      .+-...|++-|||.+-+.
T Consensus       635 cVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  635 CVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             EEEEEEecccCceeeecC
Confidence            455678999999865443

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.35  E-value=4.3  Score=44.75  Aligned_cols=134  Identities=8%  Similarity=-0.017  Sum_probs=68.6

Q ss_pred             ceeEEEEEEcCCCCcccceec-ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979          219 STTEIVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP  297 (623)
Q Consensus       219 ~~~~L~~idl~~g~~~~~~~l-~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~  297 (623)
                      ..+.+-+||.++-++  ..++ ..+  ..-...++|||++++....+..    ....+..++..+.    ...+..... 
T Consensus       213 y~~~vSvID~etmeV--~~qV~Vdg--npd~v~~spdGk~afvTsyNsE----~G~tl~em~a~e~----d~~vvfni~-  279 (635)
T PRK02888        213 YRSLFTAVDAETMEV--AWQVMVDG--NLDNVDTDYDGKYAFSTCYNSE----EGVTLAEMMAAER----DWVVVFNIA-  279 (635)
T ss_pred             eeEEEEEEECccceE--EEEEEeCC--CcccceECCCCCEEEEeccCcc----cCcceeeeccccC----ceEEEEchH-
Confidence            457788899887552  2222 222  1223469999998877654321    1334555555333    111111111 


Q ss_pred             CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCC----C-eEEEEeecccccccccccccCcceeEEeecCCCCEEE
Q 006979          298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN----N-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA  372 (623)
Q Consensus       298 ~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~----~-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~  372 (623)
                         .   --.+.+||+..++.     ..++-.+|..+    + +.....+......         .+.+   +|||+++|
T Consensus       280 ---~---iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKsPH---------GV~v---SPDGkyly  336 (635)
T PRK02888        280 ---R---IEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKNPH---------GVNT---SPDGKYFI  336 (635)
T ss_pred             ---H---HHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECCCCcc---------ceEE---CCCCCEEE
Confidence               0   12566799844442     12577888776    2 3333223211111         1222   34999888


Q ss_pred             EEEEECCeEEEEEEeCCC
Q 006979          373 CSYRQNGRSYLGILDDFG  390 (623)
Q Consensus       373 ~~~~~~g~~~L~~~d~~~  390 (623)
                      ++..-  ...+-++|.+.
T Consensus       337 Vankl--S~tVSVIDv~k  352 (635)
T PRK02888        337 ANGKL--SPTVTVIDVRK  352 (635)
T ss_pred             EeCCC--CCcEEEEEChh
Confidence            87643  34455667665

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.32  E-value=2.7  Score=46.21  Aligned_cols=158  Identities=13%  Similarity=0.110  Sum_probs=90.3

Q ss_pred             cCCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          145 YGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       145 ~g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      |.||.++++.+ ..+|....+ .|-.+|+.++  .. .++...........+..++||++.|+.....         .-|
T Consensus        20 YtGG~~~~s~nG~~L~t~~~d-~Vi~idv~t~--~~-~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs---------~ll   86 (775)
T KOG0319|consen   20 YTGGPVAWSSNGQHLYTACGD-RVIIIDVATG--SI-ALPSGSNEDEDEITALALTPDEEVLVTASRS---------QLL   86 (775)
T ss_pred             ecCCceeECCCCCEEEEecCc-eEEEEEccCC--ce-ecccCCccchhhhheeeecCCccEEEEeecc---------ceE
Confidence            66777888866 566664433 4888898877  32 2554422224456678899999887776442         446


Q ss_pred             EEEEcCCCCcccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979          224 VAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~  302 (623)
                      -++++.+|+.  ++..-. ........+++|-|.-|+-..-        ...+-+.|+..+-   -...+.|.+    +-
T Consensus        87 rv~~L~tgk~--irswKa~He~Pvi~ma~~~~g~LlAtgga--------D~~v~VWdi~~~~---~th~fkG~g----Gv  149 (775)
T KOG0319|consen   87 RVWSLPTGKL--IRSWKAIHEAPVITMAFDPTGTLLATGGA--------DGRVKVWDIKNGY---CTHSFKGHG----GV  149 (775)
T ss_pred             EEEEcccchH--hHhHhhccCCCeEEEEEcCCCceEEeccc--------cceEEEEEeeCCE---EEEEecCCC----ce
Confidence            6677777762  222211 2233445679999954443332        2347777887662   233455655    45


Q ss_pred             CcCceeCCCCc--EEEEEeCCCCeeeEEEEecCCC
Q 006979          303 PTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       303 ~~~~~ws~DG~--l~~~~~~~~g~~~L~~~d~~~~  335 (623)
                      +....|.|+-.  +++.... ++.  +..+|..+.
T Consensus       150 Vssl~F~~~~~~~lL~sg~~-D~~--v~vwnl~~~  181 (775)
T KOG0319|consen  150 VSSLLFHPHWNRWLLASGAT-DGT--VRVWNLNDK  181 (775)
T ss_pred             EEEEEeCCccchhheeecCC-Cce--EEEEEcccC
Confidence            56666777654  3333322 344  444555443

>PLN02209 serine carboxypeptidase

Probab=94.30  E-value=0.16  Score=54.18  Aligned_cols=139  Identities=14%  Similarity=0.177  Sum_probs=81.2

Q ss_pred             EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-------C--------------CHHhHHHHc
Q 006979          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-------L--------------NLSIQYWTS  522 (623)
Q Consensus       464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-------~--------------~~~~~~~a~  522 (623)
                      +.+... .+..+..|++.....      ....|+|+++.|||+......       +              ......|.+
T Consensus        44 ~~v~~~-~~~~lf~~f~es~~~------~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~  116 (437)
T PLN02209         44 IGIGEE-ENVQFFYYFIKSDKN------PQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK  116 (437)
T ss_pred             EEecCC-CCeEEEEEEEecCCC------CCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh
Confidence            444333 466788788776541      355799999999986443211       0              011223444


Q ss_pred             CceEEEEECCCCCCCCchhHHHhhccCC-ccchHHHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh----cCC-
Q 006979          523 RGWAFVDVNYGGSTGYGREFRERLLGRW-GIVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL----AFR-  595 (623)
Q Consensus       523 ~G~~v~~~d~rGs~~~g~~~~~~~~~~~-g~~~~~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~----~~~-  595 (623)
                      . ..++-+|.+-++||...  ....... -..+.+|+...++ |+.+.+..-...+.|+|-||||..+-.++    ... 
T Consensus       117 ~-anllfiDqPvGtGfSy~--~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~  193 (437)
T PLN02209        117 T-ANIIFLDQPVGSGFSYS--KTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNY  193 (437)
T ss_pred             c-CcEEEecCCCCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcc
Confidence            4 47788886655555421  1100111 1123456655555 44445555556899999999998665544    111 


Q ss_pred             ------CceeEEEecccCCCHHH
Q 006979          596 ------DTFKAGASLYGVSIPVI  612 (623)
Q Consensus       596 ------~~f~a~v~~~g~~d~~~  612 (623)
                            =-+++++...|.+|...
T Consensus       194 ~~~~~~inl~Gi~igng~td~~~  216 (437)
T PLN02209        194 ICCNPPINLQGYVLGNPITHIEF  216 (437)
T ss_pred             cccCCceeeeeEEecCcccChhh
Confidence                  14789999999988743

>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family

Probab=94.29  E-value=0.028  Score=53.98  Aligned_cols=109  Identities=17%  Similarity=0.106  Sum_probs=48.2

Q ss_pred             CCCEEEEecCCCCCcccCcCC----HHhHHHHcCceEEEEECCCCCC----CCch--------hHHHhhccCCcc-----
Q 006979          494 KPPLLVKSHGGPTSEARGILN----LSIQYWTSRGWAFVDVNYGGST----GYGR--------EFRERLLGRWGI-----  552 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~----~~~~~~a~~G~~v~~~d~rGs~----~~g~--------~~~~~~~~~~g~-----  552 (623)
                      +.|-||++||..+  ....|.    .....+.+.++-.+.+|-+-.-    +...        .........|-.     
T Consensus         3 ~k~riLcLHG~~~--na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~   80 (212)
T PF03959_consen    3 RKPRILCLHGYGQ--NAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD   80 (212)
T ss_dssp             ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred             CCceEEEeCCCCc--CHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence            3478999999843  333333    3444454447888888854221    1110        011111222322     


Q ss_pred             chHHHHHHHHHHHHh----CCCCCCCceEEEEcChHHHHHHHHh-cC--------CCceeEEEecccCC
Q 006979          553 VDVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAAL-AF--------RDTFKAGASLYGVS  608 (623)
Q Consensus       553 ~~~~D~~~~~~~l~~----~~~~d~~rv~i~G~S~GG~~~~~~~-~~--------~~~f~a~v~~~g~~  608 (623)
                      ....++..++++|.+    +|.+    .||+|+|.|+.++..++ ..        ...||.+|..+|..
T Consensus        81 ~~~~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~  145 (212)
T PF03959_consen   81 HEYEGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFP  145 (212)
T ss_dssp             GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES---
T ss_pred             ccccCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccC
Confidence            124556666665544    4433    59999999999998776 21        13589999888864

It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.

>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.25  E-value=0.093  Score=51.53  Aligned_cols=98  Identities=13%  Similarity=0.032  Sum_probs=61.7

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHH-HHHh-CCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT-FLVG-SGKADE  573 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~~-~~~~d~  573 (623)
                      |.++++|++  ......|.....++... .-|+..+.+|.+.....          ....+|+.+..- .+.+ |+   .
T Consensus         1 ~pLF~fhp~--~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~----------~~~l~~~a~~yv~~Ir~~QP---~   64 (257)
T COG3319           1 PPLFCFHPA--GGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQP----------FASLDDMAAAYVAAIRRVQP---E   64 (257)
T ss_pred             CCEEEEcCC--CCcHHHHHHHHHHhccC-ceeeccccCcccccccc----------cCCHHHHHHHHHHHHHHhCC---C
Confidence            457889988  45555677777777777 88999999985542221          223455444322 2222 22   2


Q ss_pred             CceEEEEcChHHHHHHHHhc----CCCceeEEEecccCCC
Q 006979          574 KRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVSI  609 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~~----~~~~f~a~v~~~g~~d  609 (623)
                      .-+.+.|+|+||.++.-++.    ...-++..+.+..+..
T Consensus        65 GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~  104 (257)
T COG3319          65 GPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP  104 (257)
T ss_pred             CCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence            47899999999999998872    2444555555544433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.22  E-value=1.1  Score=49.69  Aligned_cols=195  Identities=15%  Similarity=0.115  Sum_probs=100.9

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCC-CCCEEEEEEecCCCCCCCc
Q 006979          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSP-DG~~la~~~~~~~~~p~~~  272 (623)
                      -|..||-++ +|+-..-|.       .-+||.+.  ..+   --.++...+|+...+|.| |.+  +|++..-.    .+
T Consensus       373 LDlSWSKn~-fLLSSSMDK-------TVRLWh~~--~~~---CL~~F~HndfVTcVaFnPvDDr--yFiSGSLD----~K  433 (712)
T KOG0283|consen  373 LDLSWSKNN-FLLSSSMDK-------TVRLWHPG--RKE---CLKVFSHNDFVTCVAFNPVDDR--YFISGSLD----GK  433 (712)
T ss_pred             eecccccCC-eeEeccccc-------cEEeecCC--Ccc---eeeEEecCCeeEEEEecccCCC--cEeecccc----cc
Confidence            478888776 444333332       15576554  333   445567788999899999 555  45653321    13


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE---EEeec-ccccc
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSL-DAEFS  348 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~---~l~~~-~~~~~  348 (623)
                        |.+.++...    ......+..    ..+..+.+.|||+.+++... +|..++|..  .+.+.+   .|... .....
T Consensus       434 --vRiWsI~d~----~Vv~W~Dl~----~lITAvcy~PdGk~avIGt~-~G~C~fY~t--~~lk~~~~~~I~~~~~Kk~~  500 (712)
T KOG0283|consen  434 --VRLWSISDK----KVVDWNDLR----DLITAVCYSPDGKGAVIGTF-NGYCRFYDT--EGLKLVSDFHIRLHNKKKKQ  500 (712)
T ss_pred             --eEEeecCcC----eeEeehhhh----hhheeEEeccCCceEEEEEe-ccEEEEEEc--cCCeEEEeeeEeeccCcccc
Confidence              444455443    222223333    57788999999996666655 677766632  232211   11111 00000


Q ss_pred             cccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC----cce-EeeeecCCEEEEEEecCCCC
Q 006979          349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF----TDI-DNITLGNDCLFVEGASGVEP  423 (623)
Q Consensus       349 ~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~----~~v-~~~~~~~~~~~~~~~s~~~~  423 (623)
                      +-    -...+.+++.  +...++++++ +  ++|-++|.....+...-.+.    ..+ ..++.+++.|++...    -
T Consensus       501 ~~----rITG~Q~~p~--~~~~vLVTSn-D--SrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se----D  567 (712)
T KOG0283|consen  501 GK----RITGLQFFPG--DPDEVLVTSN-D--SRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE----D  567 (712)
T ss_pred             Cc----eeeeeEecCC--CCCeEEEecC-C--CceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec----C
Confidence            00    1123444432  2235666664 3  44555676444443322222    122 234668888877653    2


Q ss_pred             CeEEEEEcCC
Q 006979          424 SSVAKVTLDD  433 (623)
Q Consensus       424 ~~ly~~~l~~  433 (623)
                      ..+|..+.+.
T Consensus       568 s~VYiW~~~~  577 (712)
T KOG0283|consen  568 SWVYIWKNDS  577 (712)
T ss_pred             ceEEEEeCCC
Confidence            5678777644

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=94.16  E-value=1.5  Score=43.20  Aligned_cols=161  Identities=14%  Similarity=0.130  Sum_probs=86.0

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      +++..|+|...-|+-...|         +.+-.+|..-......-.+..+.+.+....|.|.|.+|+.- .++|-     
T Consensus       175 vn~l~FHPre~ILiS~srD---------~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg-TdHp~-----  239 (430)
T KOG0640|consen  175 VNDLDFHPRETILISGSRD---------NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG-TDHPT-----  239 (430)
T ss_pred             ccceeecchhheEEeccCC---------CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe-cCCCc-----
Confidence            4677889987544332222         45666676543211011223344445567899999988744 47763     


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccc
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW  352 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w  352 (623)
                        +.++|+++-..    -+-...+..-.+.+.++.+++.|++|..... +|.-.||  |--+  -+.+..-....++.  
T Consensus       240 --~rlYdv~T~Qc----fvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-DG~Iklw--DGVS--~rCv~t~~~AH~gs--  306 (430)
T KOG0640|consen  240 --LRLYDVNTYQC----FVSANPDDQHTGAITQVRYSSTGSLYVTASK-DGAIKLW--DGVS--NRCVRTIGNAHGGS--  306 (430)
T ss_pred             --eeEEeccceeE----eeecCcccccccceeEEEecCCccEEEEecc-CCcEEee--cccc--HHHHHHHHhhcCCc--
Confidence              77888876421    1111111122256789999999998887776 6766665  3222  23333111111110  


Q ss_pred             cccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       353 ~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                        ...+..|.    .++++++++-.+....||-+.
T Consensus       307 --evcSa~Ft----kn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  307 --EVCSAVFT----KNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             --eeeeEEEc----cCCeEEeecCCcceeeeeeec
Confidence              11123343    566666776556666666554

>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.12  E-value=0.11  Score=52.46  Aligned_cols=109  Identities=15%  Similarity=0.043  Sum_probs=64.8

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCce--EEEEECCCCCCC-CchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGW--AFVDVNYGGSTG-YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD  572 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~--~v~~~d~rGs~~-~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d  572 (623)
                      -++|++||.... ....-...+|...+.|+  +.+.+-.+..+. .|-.|.    +.--.+...++...+++|.+++.+ 
T Consensus       117 ~vlvFvHGfNnt-f~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~D----reS~~~Sr~aLe~~lr~La~~~~~-  190 (377)
T COG4782         117 TVLVFVHGFNNT-FEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYD----RESTNYSRPALERLLRYLATDKPV-  190 (377)
T ss_pred             eEEEEEcccCCc-hhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccc----hhhhhhhHHHHHHHHHHHHhCCCC-
Confidence            489999997322 11122233444444443  334444443221 111111    111123467888999999988654 


Q ss_pred             CCceEEEEcChHHHHHHHHhc----C-----CCceeEEEecccCCCHH
Q 006979          573 EKRLCITGGSAGGYTTLAALA----F-----RDTFKAGASLYGVSIPV  611 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~~----~-----~~~f~a~v~~~g~~d~~  611 (623)
                       ++|.|+.||||.++++.+++    .     +..|+=+|..+|=.|.-
T Consensus       191 -~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~D  237 (377)
T COG4782         191 -KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVD  237 (377)
T ss_pred             -ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChh
Confidence             79999999999999997762    1     23577788888866653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=93.81  E-value=2.4  Score=47.13  Aligned_cols=201  Identities=9%  Similarity=-0.005  Sum_probs=97.4

Q ss_pred             CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCE-EEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~-l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +..+.|+.+..+.+..-|..+-+|++... .-......     ..++.-.+|.|-..+ ++--+-|+.       -+|| 
T Consensus       372 ILDlSWSKn~fLLSSSMDKTVRLWh~~~~-~CL~~F~H-----ndfVTcVaFnPvDDryFiSGSLD~K-------vRiW-  437 (712)
T KOG0283|consen  372 ILDLSWSKNNFLLSSSMDKTVRLWHPGRK-ECLKVFSH-----NDFVTCVAFNPVDDRYFISGSLDGK-------VRLW-  437 (712)
T ss_pred             heecccccCCeeEeccccccEEeecCCCc-ceeeEEec-----CCeeEEEEecccCCCcEeecccccc-------eEEe-
Confidence            34566777767777666666666666543 22334443     345677788884443 332233321       3455 


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE-EcCCCCCccccCc
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFDPTIVESPT  304 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~  304 (623)
                       ++...+   +..-.+-.+.+...+++|||+..+.-..+        +..+.++..+..-.....+ +.......-..+.
T Consensus       438 -sI~d~~---Vv~W~Dl~~lITAvcy~PdGk~avIGt~~--------G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rIT  505 (712)
T KOG0283|consen  438 -SISDKK---VVDWNDLRDLITAVCYSPDGKGAVIGTFN--------GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRIT  505 (712)
T ss_pred             -ecCcCe---eEeehhhhhhheeEEeccCCceEEEEEec--------cEEEEEEccCCeEEEeeeEeeccCccccCceee
Confidence             443333   22223334667788999999976544322        2244555444321111111 1111100002355


Q ss_pred             CceeCCCC--cEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEE
Q 006979          305 EPKWSSKG--ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (623)
Q Consensus       305 ~~~ws~DG--~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~  382 (623)
                      .+++.|..  ++++.+++    .+|-.+|....++.....+-.....      +..-.|..   ||++|+..+ ++....
T Consensus       506 G~Q~~p~~~~~vLVTSnD----SrIRI~d~~~~~lv~KfKG~~n~~S------Q~~Asfs~---Dgk~IVs~s-eDs~VY  571 (712)
T KOG0283|consen  506 GLQFFPGDPDEVLVTSND----SRIRIYDGRDKDLVHKFKGFRNTSS------QISASFSS---DGKHIVSAS-EDSWVY  571 (712)
T ss_pred             eeEecCCCCCeEEEecCC----CceEEEeccchhhhhhhcccccCCc------ceeeeEcc---CCCEEEEee-cCceEE
Confidence            66666533  36666655    2455566433333222222111111      11112332   888888887 566666


Q ss_pred             EEEEe
Q 006979          383 LGILD  387 (623)
Q Consensus       383 L~~~d  387 (623)
                      ||.++
T Consensus       572 iW~~~  576 (712)
T KOG0283|consen  572 IWKND  576 (712)
T ss_pred             EEeCC
Confidence            66654

>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria

Probab=93.77  E-value=0.88  Score=48.40  Aligned_cols=101  Identities=15%  Similarity=0.135  Sum_probs=62.4

Q ss_pred             CCCCCEEEE----ecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHH-HHH
Q 006979          492 EEKPPLLVK----SHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT-FLV  566 (623)
Q Consensus       492 ~~~~Pliv~----~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~  566 (623)
                      ..++|.||+    .||-.-+....  ....-.-...|.-|..+-+.-...-             .+..+|+..+.. ++.
T Consensus        66 ~~krP~vViDPRAGHGpGIGGFK~--dSevG~AL~~GHPvYFV~F~p~P~p-------------gQTl~DV~~ae~~Fv~  130 (581)
T PF11339_consen   66 PTKRPFVVIDPRAGHGPGIGGFKP--DSEVGVALRAGHPVYFVGFFPEPEP-------------GQTLEDVMRAEAAFVE  130 (581)
T ss_pred             CCCCCeEEeCCCCCCCCCccCCCc--ccHHHHHHHcCCCeEEEEecCCCCC-------------CCcHHHHHHHHHHHHH
Confidence            456788887    35432222222  3344444456888887776643322             234677776644 333


Q ss_pred             h----CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEE-EecccCCC
Q 006979          567 G----SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAG-ASLYGVSI  609 (623)
Q Consensus       567 ~----~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~-v~~~g~~d  609 (623)
                      +    ++  |..|+.++|-|.||+++++++ .+|+++.-+ ++.+|++=
T Consensus       131 ~V~~~hp--~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsy  177 (581)
T PF11339_consen  131 EVAERHP--DAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSY  177 (581)
T ss_pred             HHHHhCC--CCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCccc
Confidence            2    22  234999999999999999988 889988644 45566553

Their function is unknown.

>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]

Probab=93.76  E-value=0.18  Score=52.04  Aligned_cols=100  Identities=16%  Similarity=0.129  Sum_probs=64.1

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceE---EEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~---v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      .+|++||.  ......+......+...|+.   +..+++.+.......          ....+-+.+-++.+..+..  .
T Consensus        61 pivlVhG~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~ql~~~V~~~l~~~g--a  126 (336)
T COG1075          61 PIVLVHGL--GGGYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYSL----------AVRGEQLFAYVDEVLAKTG--A  126 (336)
T ss_pred             eEEEEccC--cCCcchhhhhhhhhcchHHHhcccccccccccCCCccc----------cccHHHHHHHHHHHHhhcC--C
Confidence            57779997  33444555566667777888   888887754111110          1112333344444433322  3


Q ss_pred             CceEEEEcChHHHHHHHHh-cCC--CceeEEEecccCCCH
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFR--DTFKAGASLYGVSIP  610 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~--~~f~a~v~~~g~~d~  610 (623)
                      ++|-++|||+||.++.+.+ ..+  ..++..+...++-.-
T Consensus       127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~G  166 (336)
T COG1075         127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPHHG  166 (336)
T ss_pred             CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCCCC
Confidence            7999999999999999888 555  789999988776433

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.72  E-value=7.7  Score=41.55  Aligned_cols=112  Identities=13%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             EEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCC----CCCCeeecceeeCCCC-----CEEEEEEeccCCCCC--C
Q 006979          151 RIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY----GEPLVSYADGIFDPRF-----NRYVTVREDRRQDAL--N  218 (623)
Q Consensus       151 ~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~----~~~~~~~~d~~~sPdG-----~~l~~v~~~~~~~~~--~  218 (623)
                      ++.+| .++++....++|++++..++  ..+.+....    .....-..+++++||-     +..+|+.........  .
T Consensus        36 aflPDG~llVtER~~G~I~~v~~~~~--~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~  113 (454)
T TIGR03606        36 LWGPDNQLWVTERATGKILRVNPETG--EVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELP  113 (454)
T ss_pred             EEcCCCeEEEEEecCCEEEEEeCCCC--ceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCcc
Confidence            33444 55555433688999987654  222221110    0012234567788773     234444432111100  0


Q ss_pred             ceeEEEEEEcCC--CCcccceecccC-----CCcccceeeCCCCCEEEEEEecC
Q 006979          219 STTEIVAIALNG--QNIQEPKVLVSG-----SDFYAFPRMDPRGERMAWIEWHH  265 (623)
Q Consensus       219 ~~~~L~~idl~~--g~~~~~~~l~~~-----~~~~~~p~wSPDG~~la~~~~~~  265 (623)
                      ....|.++.++.  ......+.|..+     ..+-....|.|||+ |++..-+.
T Consensus       114 ~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~  166 (454)
T TIGR03606       114 NHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQ  166 (454)
T ss_pred             CCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCC
Confidence            236788877653  222222333221     12344567999996 77765443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2984 consensus Predicted hydrolase [General function prediction only]

Probab=93.61  E-value=0.086  Score=48.56  Aligned_cols=101  Identities=12%  Similarity=0.088  Sum_probs=63.4

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHH-HcCceEEEEECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCC
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~-a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|+.+.|.- +.....|.+....+ -..-+.+++.|.||   ||.+-  ...+..+. .-.+|...|++-+...   +.+
T Consensus        44 ~iLlipGal-Gs~~tDf~pql~~l~k~l~~TivawDPpG---YG~Sr--PP~Rkf~~~ff~~Da~~avdLM~aL---k~~  114 (277)
T KOG2984|consen   44 YILLIPGAL-GSYKTDFPPQLLSLFKPLQVTIVAWDPPG---YGTSR--PPERKFEVQFFMKDAEYAVDLMEAL---KLE  114 (277)
T ss_pred             eeEeccccc-ccccccCCHHHHhcCCCCceEEEEECCCC---CCCCC--CCcccchHHHHHHhHHHHHHHHHHh---CCC
Confidence            566676663 33444666544333 33459999999999   44421  11222222 1246777777766654   357


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                      ++.|+|+|=||.+++.++ .+++.+.-.|.+.+
T Consensus       115 ~fsvlGWSdGgiTalivAak~~e~v~rmiiwga  147 (277)
T KOG2984|consen  115 PFSVLGWSDGGITALIVAAKGKEKVNRMIIWGA  147 (277)
T ss_pred             CeeEeeecCCCeEEEEeeccChhhhhhheeecc
Confidence            999999999999999888 77776655444433

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=93.60  E-value=5.5  Score=38.66  Aligned_cols=125  Identities=14%  Similarity=0.078  Sum_probs=72.3

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec--ccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l--~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~  270 (623)
                      .+...+|||+++.+.|.+.+.       --+|.+|-++..... ..+  +.+..|+.  .||......|....|.     
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~-------Vf~y~id~~sey~~~-~~~a~t~D~gF~~--S~s~~~~~FAv~~Qdg-----  225 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRR-------VFRYAIDDESEYIEN-IYEAPTSDHGFYN--SFSENDLQFAVVFQDG-----  225 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCc-------ceEEEeCCccceeee-eEecccCCCceee--eeccCcceEEEEecCC-----
Confidence            445779999999988855321       335555554433211 122  34455654  6998887777776443     


Q ss_pred             CceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc--EEEEEeCCCCeeeEEEEecCCCeEEEE
Q 006979          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAI  340 (623)
Q Consensus       271 ~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~--l~~~~~~~~g~~~L~~~d~~~~~~~~l  340 (623)
                         .+.++|+..-+.  .........+.-.+.+....|++-|-  |+|.+.   ++..+.++|..++.-.++
T Consensus       226 ---~~~I~DVR~~~t--pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  226 ---TCAIYDVRNMAT--PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             ---cEEEEEeccccc--chhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeE
Confidence               366777765432  11111111111116677788998776  777765   466778888887764433

>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]

Probab=93.58  E-value=1.7  Score=42.86  Aligned_cols=131  Identities=10%  Similarity=0.033  Sum_probs=87.9

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc---CcC-CHHhHHHHcCceEEEEECCCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GIL-NLSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~---~~~-~~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      .++..+.+. . ..++..++-...       + +.|+||..|.-......   .-| .+.++.+.++ |.|.-+|.+|.-
T Consensus        22 ~~e~~V~T~-~-G~v~V~V~Gd~~-------~-~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe   90 (326)
T KOG2931|consen   22 CQEHDVETA-H-GVVHVTVYGDPK-------G-NKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQE   90 (326)
T ss_pred             ceeeeeccc-c-ccEEEEEecCCC-------C-CCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccc
Confidence            456666665 4 357777775433       3 56889999986432222   112 2567778888 999999999853


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .-    ......++.....+|+.+-+..+.++=.  -+-|.-+|--+|+|+-...+ .||+++-+.|.+.+..
T Consensus        91 ~g----Ap~~p~~y~yPsmd~LAd~l~~VL~~f~--lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~  157 (326)
T KOG2931|consen   91 DG----APSFPEGYPYPSMDDLADMLPEVLDHFG--LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDP  157 (326)
T ss_pred             cC----CccCCCCCCCCCHHHHHHHHHHHHHhcC--cceEEEecccccHHHHHHHHhcChhheeEEEEEecCC
Confidence            22    1223444444456666666666655422  36788899999999998888 9999999999887654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.49  E-value=4.2  Score=39.12  Aligned_cols=200  Identities=9%  Similarity=0.020  Sum_probs=96.5

Q ss_pred             eCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979          153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (623)
Q Consensus       153 s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~  232 (623)
                      +.+.+++....||.|-++|+.-.   ..+|..-.+. ..-+....|++-.++.+.+..-.        ..|-+.+..-++
T Consensus        71 ~~e~~~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH-~~EV~Svdwn~~~r~~~ltsSWD--------~TiKLW~~~r~~  138 (311)
T KOG0277|consen   71 NHENQVIAASGDGSLRLFDLTMP---SKPIHKFKEH-KREVYSVDWNTVRRRIFLTSSWD--------GTIKLWDPNRPN  138 (311)
T ss_pred             CCcceEEEEecCceEEEeccCCC---CcchhHHHhh-hhheEEeccccccceeEEeeccC--------CceEeecCCCCc
Confidence            34456667778888888886422   2222211011 11233456888776666654211        234444444333


Q ss_pred             cccceecccCCCcccceeeCCC-CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC
Q 006979          233 IQEPKVLVSGSDFYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (623)
Q Consensus       233 ~~~~~~l~~~~~~~~~p~wSPD-G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D  311 (623)
                      .  ++...+....+.+..|||- +.-++..+.|.        .+.+.|+...|   ....++...    ..+..-.|+.=
T Consensus       139 S--v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~--------~l~lwdvr~~g---k~~~i~ah~----~Eil~cdw~ky  201 (311)
T KOG0277|consen  139 S--VQTFNGHNSCIYQAAFSPHIPNLFASASGDG--------TLRLWDVRSPG---KFMSIEAHN----SEILCCDWSKY  201 (311)
T ss_pred             c--eEeecCCccEEEEEecCCCCCCeEEEccCCc--------eEEEEEecCCC---ceeEEEecc----ceeEeeccccc
Confidence            1  4444444455667889995 55455554332        24555655443   233333332    23345568765


Q ss_pred             Cc-EEEEEeCCCCeeeEEEEecCCCe--EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          312 GE-LFFVTDRKNGFWNLHKWIESNNE--VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       312 G~-l~~~~~~~~g~~~L~~~d~~~~~--~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      .. +++.... ++.  |..+|+..-+  +-+|......+....|++            -...++.+.+-+-..+|+....
T Consensus       202 ~~~vl~Tg~v-d~~--vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp------------h~~~lLaSasYDmT~riw~~~~  266 (311)
T KOG0277|consen  202 NHNVLATGGV-DNL--VRGWDIRNLRTPLFELNGHGLAVRKVKFSP------------HHASLLASASYDMTVRIWDPER  266 (311)
T ss_pred             CCcEEEecCC-Cce--EEEEehhhccccceeecCCceEEEEEecCc------------chhhHhhhccccceEEeccccc
Confidence            55 6655544 332  3344443321  222323333444444443            2334555555566667765543


Q ss_pred             CCCceeec
Q 006979          389 FGHSLSLL  396 (623)
Q Consensus       389 ~~~~~~~l  396 (623)
                      ..+.++..
T Consensus       267 ~ds~~e~~  274 (311)
T KOG0277|consen  267 QDSAIETV  274 (311)
T ss_pred             chhhhhhh
Confidence            33333333

>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]

Probab=93.48  E-value=0.18  Score=53.56  Aligned_cols=84  Identities=19%  Similarity=0.330  Sum_probs=59.7

Q ss_pred             CCEEEEecCCCCCccc-CcCCHHhHHHH-cCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC----
Q 006979          495 PPLLVKSHGGPTSEAR-GILNLSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS----  568 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~-~~~~~~~~~~a-~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~----  568 (623)
                      +-+||.+|||+..... .....+...|+ +.|.-|+.+||-=.           .+..-....+.+.-|.-|++++    
T Consensus       396 ~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLA-----------PEaPFPRaleEv~fAYcW~inn~all  464 (880)
T KOG4388|consen  396 RSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLA-----------PEAPFPRALEEVFFAYCWAINNCALL  464 (880)
T ss_pred             ceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccC-----------CCCCCCcHHHHHHHHHHHHhcCHHHh
Confidence            4589999999754433 23444555555 57999999998632           2233334578888899999885    


Q ss_pred             CCCCCCceEEEEcChHHHHHHH
Q 006979          569 GKADEKRLCITGGSAGGYTTLA  590 (623)
Q Consensus       569 ~~~d~~rv~i~G~S~GG~~~~~  590 (623)
                      |+ ..+||++.|-|+||.+.+-
T Consensus       465 G~-TgEriv~aGDSAGgNL~~~  485 (880)
T KOG4388|consen  465 GS-TGERIVLAGDSAGGNLCFT  485 (880)
T ss_pred             Cc-ccceEEEeccCCCcceeeh
Confidence            44 4689999999999987543

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.45  E-value=15  Score=40.69  Aligned_cols=134  Identities=9%  Similarity=-0.011  Sum_probs=71.7

Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD  244 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~  244 (623)
                      +.+-++|.++- ....++.-+     .+.-...++|||+++++.+-+...     ...+..++.....   . .+.-+..
T Consensus       215 ~~vSvID~etm-eV~~qV~Vd-----gnpd~v~~spdGk~afvTsyNsE~-----G~tl~em~a~e~d---~-~vvfni~  279 (635)
T PRK02888        215 SLFTAVDAETM-EVAWQVMVD-----GNLDNVDTDYDGKYAFSTCYNSEE-----GVTLAEMMAAERD---W-VVVFNIA  279 (635)
T ss_pred             EEEEEEECccc-eEEEEEEeC-----CCcccceECCCCCEEEEeccCccc-----CcceeeeccccCc---e-EEEEchH
Confidence            44677887754 122333322     133345689999988776533211     1456666654432   1 1111111


Q ss_pred             cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC----CCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE----NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       245 ~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~  320 (623)
                        ...++.+||++.. +.         ...+-++|...    +..+ ...+..+      .++.....+|||+.+++++.
T Consensus       280 --~iea~vkdGK~~~-V~---------gn~V~VID~~t~~~~~~~v-~~yIPVG------KsPHGV~vSPDGkylyVank  340 (635)
T PRK02888        280 --RIEEAVKAGKFKT-IG---------GSKVPVVDGRKAANAGSAL-TRYVPVP------KNPHGVNTSPDGKYFIANGK  340 (635)
T ss_pred             --HHHHhhhCCCEEE-EC---------CCEEEEEECCccccCCcce-EEEEECC------CCccceEECCCCCEEEEeCC
Confidence              1235788999665 32         23477888776    2111 1222233      34568899999996667665


Q ss_pred             CCCeeeEEEEecCC
Q 006979          321 KNGFWNLHKWIESN  334 (623)
Q Consensus       321 ~~g~~~L~~~d~~~  334 (623)
                        ....+-.+|.++
T Consensus       341 --lS~tVSVIDv~k  352 (635)
T PRK02888        341 --LSPTVTVIDVRK  352 (635)
T ss_pred             --CCCcEEEEEChh
Confidence              233455666654

>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=17  Score=41.97  Aligned_cols=112  Identities=17%  Similarity=0.115  Sum_probs=65.5

Q ss_pred             ccccCc-CceeCCCCc--EEEEEeCCCC-eeeEEEEecCCC-eEEEEeeccccccc-ccccccCcceeEEeecCCCCEEE
Q 006979          299 IVESPT-EPKWSSKGE--LFFVTDRKNG-FWNLHKWIESNN-EVLAIYSLDAEFSR-PLWVFGINSYEIIQSHGEKNLIA  372 (623)
Q Consensus       299 ~~~~~~-~~~ws~DG~--l~~~~~~~~g-~~~L~~~d~~~~-~~~~l~~~~~~~~~-~~w~~~~~~~~~l~~s~~~~~l~  372 (623)
                      |..... .+.++.|+.  +++.... .+ +.++..+...++ ..+.++.++.++.. ..|            +.+.+.++
T Consensus       337 W~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~------------~~~~~~i~  403 (755)
T KOG2100|consen  337 WVEHQNVEPVFSSDGSSYLKVDSVS-DGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGY------------DKDSNRIY  403 (755)
T ss_pred             ccccccccceEeecCCceeEEEeec-cCCEEEEEEEEcCCCCccccccccceEEEEeccc------------cCCCceEE
Confidence            444333 477888875  4444444 44 677776666555 45555555444321 111            12667888


Q ss_pred             EEEEE--CCeEEEEEEeCCCCceeecccCCc----ceEee--eecCCEEEEEEecCCCC
Q 006979          373 CSYRQ--NGRSYLGILDDFGHSLSLLDIPFT----DIDNI--TLGNDCLFVEGASGVEP  423 (623)
Q Consensus       373 ~~~~~--~g~~~L~~~d~~~~~~~~lt~~~~----~v~~~--~~~~~~~~~~~~s~~~~  423 (623)
                      |.+..  .+..+||.+++.+...+.++....    .+..+  +.....+++.+..+..|
T Consensus       404 f~~~~~~~~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p  462 (755)
T KOG2100|consen  404 FDAYEEDPSERHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVP  462 (755)
T ss_pred             EEecCCCCCceEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEEccCCCCC
Confidence            88776  578899999999888777775533    23333  33445555555555555

>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]

Probab=93.36  E-value=0.24  Score=51.23  Aligned_cols=90  Identities=11%  Similarity=0.047  Sum_probs=61.5

Q ss_pred             CHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-
Q 006979          514 NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-  592 (623)
Q Consensus       514 ~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-  592 (623)
                      .....+++++|.-|+.++.++-. .+..     ..++-.+..+++..+++.+.+...  .++|-++|+|.||.+...++ 
T Consensus       129 ~s~V~~l~~~g~~vfvIsw~nPd-~~~~-----~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala  200 (445)
T COG3243         129 KSLVRWLLEQGLDVFVISWRNPD-ASLA-----AKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALA  200 (445)
T ss_pred             ccHHHHHHHcCCceEEEeccCch-Hhhh-----hccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHH
Confidence            36789999999999999987521 1111     222222334677788888877532  37899999999999998877 


Q ss_pred             cCCCc-eeEEEecccCCCHH
Q 006979          593 AFRDT-FKAGASLYGVSIPV  611 (623)
Q Consensus       593 ~~~~~-f~a~v~~~g~~d~~  611 (623)
                      .++.. ++.++.+.-..|..
T Consensus       201 ~~~~k~I~S~T~lts~~DF~  220 (445)
T COG3243         201 LMAAKRIKSLTLLTSPVDFS  220 (445)
T ss_pred             hhhhcccccceeeecchhhc
Confidence            44554 67666665555543

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=93.22  E-value=2.2  Score=43.69  Aligned_cols=143  Identities=15%  Similarity=0.082  Sum_probs=77.1

Q ss_pred             ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEe-------
Q 006979           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSN-------  161 (623)
Q Consensus        90 ~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~-------  161 (623)
                      ++=++++.. ++.+|-.|      .-.-|+..+..+ +....+.+...+.+-++.  ....+.. .+.+||++       
T Consensus       116 RPLGl~f~~~ggdL~VaD------AYlGL~~V~p~g-~~a~~l~~~~~G~~~kf~--N~ldI~~-~g~vyFTDSSsk~~~  185 (376)
T KOG1520|consen  116 RPLGIRFDKKGGDLYVAD------AYLGLLKVGPEG-GLAELLADEAEGKPFKFL--NDLDIDP-EGVVYFTDSSSKYDR  185 (376)
T ss_pred             CcceEEeccCCCeEEEEe------cceeeEEECCCC-CcceeccccccCeeeeec--CceeEcC-CCeEEEeccccccch
Confidence            445788877 66777655      344466666652 244444443323222211  1111111 22344432       


Q ss_pred             ----------CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979          162 ----------YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (623)
Q Consensus       162 ----------~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g  231 (623)
                                ..+|+|+++|..+.  ..+.|.++    -.+.+..+.|||+.++++..-.        ..+|.++=+.+.
T Consensus       186 rd~~~a~l~g~~~GRl~~YD~~tK--~~~VLld~----L~F~NGlaLS~d~sfvl~~Et~--------~~ri~rywi~g~  251 (376)
T KOG1520|consen  186 RDFVFAALEGDPTGRLFRYDPSTK--VTKVLLDG----LYFPNGLALSPDGSFVLVAETT--------TARIKRYWIKGP  251 (376)
T ss_pred             hheEEeeecCCCccceEEecCccc--chhhhhhc----ccccccccCCCCCCEEEEEeec--------cceeeeeEecCC
Confidence                      34578999999876  67777764    3445677899999998885432        144555556554


Q ss_pred             Ccccceeccc-CCCcccceeeCCCCC
Q 006979          232 NIQEPKVLVS-GSDFYAFPRMDPRGE  256 (623)
Q Consensus       232 ~~~~~~~l~~-~~~~~~~p~wSPDG~  256 (623)
                      +......++. -+++.-..+-+++|.
T Consensus       252 k~gt~EvFa~~LPG~PDNIR~~~~G~  277 (376)
T KOG1520|consen  252 KAGTSEVFAEGLPGYPDNIRRDSTGH  277 (376)
T ss_pred             ccCchhhHhhcCCCCCcceeECCCCC
Confidence            3211234444 233333455677775

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.18  E-value=2.5  Score=43.65  Aligned_cols=37  Identities=19%  Similarity=0.201  Sum_probs=22.2

Q ss_pred             cceeeCCCCCEEEEEEeccCC-----CCCCceeEEEEEEcCCC
Q 006979          194 ADGIFDPRFNRYVTVREDRRQ-----DALNSTTEIVAIALNGQ  231 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~~~~-----~~~~~~~~L~~idl~~g  231 (623)
                      ..+.|.||| .|++..-+...     .+......|.+++.++.
T Consensus       117 ~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~  158 (331)
T PF07995_consen  117 GGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS  158 (331)
T ss_dssp             EEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred             ccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCc
Confidence            357899999 55555544432     22344678889987754

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.17  E-value=3.3  Score=41.90  Aligned_cols=141  Identities=6%  Similarity=0.016  Sum_probs=77.2

Q ss_pred             eEEEEEEcCCCCcccceecccC---CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979          221 TEIVAIALNGQNIQEPKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP  297 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~---~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~  297 (623)
                      ..||++|+.+-+.  ...+..-   ..-......++++.+|||-...      +..+|+++|+..-.   ....+...+ 
T Consensus       106 e~IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~------t~GdV~l~d~~nl~---~v~~I~aH~-  173 (391)
T KOG2110|consen  106 ESIYIYDIKDMKL--LHTIETTPPNPKGLCALSPNNANCYLAYPGST------TSGDVVLFDTINLQ---PVNTINAHK-  173 (391)
T ss_pred             ccEEEEeccccee--ehhhhccCCCccceEeeccCCCCceEEecCCC------CCceEEEEEcccce---eeeEEEecC-
Confidence            3599999987542  2223221   1112223445556699987522      35679999987652   333444444 


Q ss_pred             CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCC-eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979          298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (623)
Q Consensus       298 ~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~  376 (623)
                         ..+.-.++++||.++..+.. .|. -|-++...+| +..+.-.+-..       ...-++.|.+   +++ ++..+.
T Consensus       174 ---~~lAalafs~~G~llATASe-KGT-VIRVf~v~~G~kl~eFRRG~~~-------~~IySL~Fs~---ds~-~L~~sS  237 (391)
T KOG2110|consen  174 ---GPLAALAFSPDGTLLATASE-KGT-VIRVFSVPEGQKLYEFRRGTYP-------VSIYSLSFSP---DSQ-FLAASS  237 (391)
T ss_pred             ---CceeEEEECCCCCEEEEecc-Cce-EEEEEEcCCccEeeeeeCCcee-------eEEEEEEECC---CCC-eEEEec
Confidence               56778899999996655544 343 2333333333 33333222111       1122344542   555 555555


Q ss_pred             ECCeEEEEEEeCC
Q 006979          377 QNGRSYLGILDDF  389 (623)
Q Consensus       377 ~~g~~~L~~~d~~  389 (623)
                      ..+.-|++.++..
T Consensus       238 ~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  238 NTETVHIFKLEKV  250 (391)
T ss_pred             CCCeEEEEEeccc
Confidence            6788999988754

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=93.15  E-value=7.7  Score=36.50  Aligned_cols=155  Identities=12%  Similarity=0.119  Sum_probs=87.1

Q ss_pred             EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCC---CCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~---~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      |.|+ +.++.+...+..|..+|+.-. ..+..|....   +....-+...+.+|.|+.|+--.++         ..-.++
T Consensus       190 yswn-~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d---------ssc~ly  258 (350)
T KOG0641|consen  190 YSWN-GAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD---------SSCMLY  258 (350)
T ss_pred             EEec-CcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC---------CceEEE
Confidence            4443 345555556666777777533 2344444331   1122345677899999876654333         446677


Q ss_pred             EcCCCCcccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCcee-eeEEEcCCCCCccccCc
Q 006979          227 ALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCVAGFDPTIVESPT  304 (623)
Q Consensus       227 dl~~g~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~  304 (623)
                      |+.++.   ..+-. ....-+...+|||---+|.-.+.|.        .|.+-|+.+.-.-+ ...++.+..    ...-
T Consensus       259 dirg~r---~iq~f~phsadir~vrfsp~a~yllt~syd~--------~ikltdlqgdla~el~~~vv~ehk----dk~i  323 (350)
T KOG0641|consen  259 DIRGGR---MIQRFHPHSADIRCVRFSPGAHYLLTCSYDM--------KIKLTDLQGDLAHELPIMVVAEHK----DKAI  323 (350)
T ss_pred             EeeCCc---eeeeeCCCccceeEEEeCCCceEEEEecccc--------eEEEeecccchhhcCceEEEEecc----CceE
Confidence            888887   43332 2222234578999887776555442        37888887652101 122333333    2345


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEEEe
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d  331 (623)
                      +.+|.|.. +-|++...+....||.++
T Consensus       324 ~~rwh~~d-~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  324 QCRWHPQD-FSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEecCcc-ceeeeccCcceEEEeccC
Confidence            78999976 667765534455666553

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=93.14  E-value=3.1  Score=40.99  Aligned_cols=96  Identities=17%  Similarity=0.264  Sum_probs=57.9

Q ss_pred             CCcccceeeCCCCCEE-EEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCC
Q 006979          243 SDFYAFPRMDPRGERM-AWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK  321 (623)
Q Consensus       243 ~~~~~~p~wSPDG~~l-a~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~  321 (623)
                      .|.+...+|||.-..+ +--+||.      .  +.+++++..+.... +.....+    .-+....|+.||..+|...- 
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~------t--VR~wevq~~g~~~~-ka~~~~~----~PvL~v~WsddgskVf~g~~-   92 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDG------T--VRIWEVQNSGQLVP-KAQQSHD----GPVLDVCWSDDGSKVFSGGC-   92 (347)
T ss_pred             ccchheeEeccccCceEEecccCC------c--eEEEEEecCCcccc-hhhhccC----CCeEEEEEccCCceEEeecc-
Confidence            4556778899944333 3445653      3  44445544332111 1112222    34567899999997777665 


Q ss_pred             CCeeeEEEEecCCCeEEEEeecccccccccccc
Q 006979          322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF  354 (623)
Q Consensus       322 ~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~  354 (623)
                      ++...  .+|+.+++..++-..+..+....|+.
T Consensus        93 Dk~~k--~wDL~S~Q~~~v~~Hd~pvkt~~wv~  123 (347)
T KOG0647|consen   93 DKQAK--LWDLASGQVSQVAAHDAPVKTCHWVP  123 (347)
T ss_pred             CCceE--EEEccCCCeeeeeecccceeEEEEec
Confidence            45544  46888998888887766666667765

>COG3150 Predicted esterase [General function prediction only]

Probab=93.08  E-value=0.41  Score=42.95  Aligned_cols=44  Identities=20%  Similarity=0.092  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEE
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGA  602 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v  602 (623)
                      .....+-++.++++. .| ..++|+|-|.|||.+.++. .+.  +++++
T Consensus        42 p~~a~~ele~~i~~~-~~-~~p~ivGssLGGY~At~l~~~~G--irav~   86 (191)
T COG3150          42 PQQALKELEKAVQEL-GD-ESPLIVGSSLGGYYATWLGFLCG--IRAVV   86 (191)
T ss_pred             HHHHHHHHHHHHHHc-CC-CCceEEeecchHHHHHHHHHHhC--Chhhh
Confidence            455555666665553 23 2499999999999999998 553  45544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=93.07  E-value=2.7  Score=40.27  Aligned_cols=135  Identities=10%  Similarity=-0.002  Sum_probs=76.0

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      ..+.+.|..+|..  ++.|... ..+...+.|+||+.|...  +       ++.|-..|...-+.+....    .+    
T Consensus       165 ~tVRLWD~rTgt~--v~sL~~~-s~VtSlEvs~dG~ilTia--~-------gssV~Fwdaksf~~lKs~k----~P----  224 (334)
T KOG0278|consen  165 KTVRLWDHRTGTE--VQSLEFN-SPVTSLEVSQDGRILTIA--Y-------GSSVKFWDAKSFGLLKSYK----MP----  224 (334)
T ss_pred             CceEEEEeccCcE--EEEEecC-CCCcceeeccCCCEEEEe--c-------CceeEEeccccccceeecc----Cc----
Confidence            3466678888862  3444332 335667899999976533  2       3335556665443211111    11    


Q ss_pred             ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (623)
Q Consensus       301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~  380 (623)
                      ..+......|+-.+|+ +..  ....+|++|-.+++.+.... ...++..      ....|.    .++.+|.+..++|.
T Consensus       225 ~nV~SASL~P~k~~fV-aGg--ed~~~~kfDy~TgeEi~~~n-kgh~gpV------hcVrFS----PdGE~yAsGSEDGT  290 (334)
T KOG0278|consen  225 CNVESASLHPKKEFFV-AGG--EDFKVYKFDYNTGEEIGSYN-KGHFGPV------HCVRFS----PDGELYASGSEDGT  290 (334)
T ss_pred             cccccccccCCCceEE-ecC--cceEEEEEeccCCceeeecc-cCCCCce------EEEEEC----CCCceeeccCCCce
Confidence            3455667788864444 432  23458899988987665531 1122211      122333    33457777778999


Q ss_pred             EEEEEEeCC
Q 006979          381 SYLGILDDF  389 (623)
Q Consensus       381 ~~L~~~d~~  389 (623)
                      -+||...+.
T Consensus       291 irlWQt~~~  299 (334)
T KOG0278|consen  291 IRLWQTTPG  299 (334)
T ss_pred             EEEEEecCC
Confidence            999887653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=92.92  E-value=4  Score=42.82  Aligned_cols=169  Identities=12%  Similarity=0.073  Sum_probs=96.1

Q ss_pred             EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      |.+.+..|+-+. ..|.|.+..+.++ ...+.++.+.   .....-..+||-.++++.+..+.        +.+-++|..
T Consensus       129 YN~~DeyiAsvs-~gGdiiih~~~t~-~~tt~f~~~s---gqsvRll~ys~skr~lL~~asd~--------G~VtlwDv~  195 (673)
T KOG4378|consen  129 YNNTDEYIASVS-DGGDIIIHGTKTK-QKTTTFTIDS---GQSVRLLRYSPSKRFLLSIASDK--------GAVTLWDVQ  195 (673)
T ss_pred             ecCCcceeEEec-cCCcEEEEecccC-ccccceecCC---CCeEEEeecccccceeeEeeccC--------CeEEEEecc
Confidence            333333443332 3466888888776 4455666541   22233466899889888877655        456677887


Q ss_pred             CCCcccceecccC----CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          230 GQNIQEPKVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       230 ~g~~~~~~~l~~~----~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      +..   +  +..-    ..-..+.+|||-...|...- -      -...|+++|......  ..++...      .-...
T Consensus       196 g~s---p--~~~~~~~HsAP~~gicfspsne~l~vsV-G------~Dkki~~yD~~s~~s--~~~l~y~------~Plst  255 (673)
T KOG4378|consen  196 GMS---P--IFHASEAHSAPCRGICFSPSNEALLVSV-G------YDKKINIYDIRSQAS--TDRLTYS------HPLST  255 (673)
T ss_pred             CCC---c--ccchhhhccCCcCcceecCCccceEEEe-c------ccceEEEeecccccc--cceeeec------CCcce
Confidence            643   2  2111    12244567999877664332 1      134599999875532  2333332      23568


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCe--EEEEeecccccccccccc
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNE--VLAIYSLDAEFSRPLWVF  354 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~--~~~l~~~~~~~~~~~w~~  354 (623)
                      ++|+++|.+++....   ..+|+.||+.+.+  ...+...+..+....|..
T Consensus       256 vaf~~~G~~L~aG~s---~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  256 VAFSECGTYLCAGNS---KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             eeecCCceEEEeecC---CceEEEEecccCCCCceEeeecccceeEEEeee
Confidence            899999964444433   3478889886643  233333444455555654

>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular

Probab=92.89  E-value=0.58  Score=49.19  Aligned_cols=86  Identities=7%  Similarity=-0.015  Sum_probs=55.0

Q ss_pred             CHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-
Q 006979          514 NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-  592 (623)
Q Consensus       514 ~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-  592 (623)
                      +...++|.. |+-|...|..--+...     ...+.++   .+|.+..+...++.  +-++ +-++|+|+||-+++.++ 
T Consensus       120 RS~V~~Ll~-g~dVYl~DW~~p~~vp-----~~~~~f~---ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~A  187 (406)
T TIGR01849       120 RSTVEALLP-DHDVYITDWVNARMVP-----LSAGKFD---LEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVA  187 (406)
T ss_pred             HHHHHHHhC-CCcEEEEeCCCCCCCc-----hhcCCCC---HHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHH
Confidence            457888888 9999999976422100     0123343   45554433332222  2244 99999999999977554 


Q ss_pred             c-----CCCceeEEEecccCCCHH
Q 006979          593 A-----FRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       593 ~-----~~~~f~a~v~~~g~~d~~  611 (623)
                      .     +|...+..+.+.++.|..
T Consensus       188 l~a~~~~p~~~~sltlm~~PID~~  211 (406)
T TIGR01849       188 LMAENEPPAQPRSMTLMGGPIDAR  211 (406)
T ss_pred             HHHhcCCCCCcceEEEEecCccCC
Confidence            2     256789999999988864

This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some

>PRK13615 lipoprotein LpqB; Provisional

Probab=92.75  E-value=8.7  Score=42.34  Aligned_cols=160  Identities=10%  Similarity=0.067  Sum_probs=84.5

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~  273 (623)
                      ..+..|+||+.++++..+         ..|++-... +.   .+.+..+. -...|.|+++| ++ |+..+..     ..
T Consensus       337 ~s~avS~dg~~~A~v~~~---------~~l~vg~~~-~~---~~~~~~~~-~Lt~PS~d~~g-~v-Wtv~~g~-----~~  395 (557)
T PRK13615        337 DAATLSADGRQAAVRNAS---------GVWSVGDGD-RD---AVLLDTRP-GLVAPSLDAQG-YV-WSTPASD-----PR  395 (557)
T ss_pred             ccceEcCCCceEEEEcCC---------ceEEEecCC-Cc---ceeeccCC-ccccCcCcCCC-CE-EEEeCCC-----ce
Confidence            457899999999888331         345555444 33   34454443 35679999999 55 5543332     22


Q ss_pred             EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEE--EEecCCCeEEEE-e------ec
Q 006979          274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIESNNEVLAI-Y------SL  343 (623)
Q Consensus       274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~--~~d~~~~~~~~l-~------~~  343 (623)
                      .+..  ....+.  ...+......+  ..+..++-|+||. ++++.+. .|..+|+  .+--.++..+.| +      ..
T Consensus       396 ~l~~--~~~~G~--~~~v~v~~~~~--~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~  468 (557)
T PRK13615        396 GLVA--WGPDGV--GHPVAVSWTAT--GRVVSLEVARDGARVLVQLET-GAGPQLLVASIVRDGGVPTSLTTTPLELLAS  468 (557)
T ss_pred             EEEE--ecCCCc--eEEeeccccCC--CeeEEEEeCCCccEEEEEEec-CCCCEEEEEEEEeCCCcceEeeeccEEcccC
Confidence            2222  322222  11111111101  4578899999998 7777664 3444444  232234434445 2      11


Q ss_pred             ccccccccccccCcceeEEeecCCCCEEEEEE-EECCeEEEEEEeCCCCcee
Q 006979          344 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLS  394 (623)
Q Consensus       344 ~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~-~~~g~~~L~~~d~~~~~~~  394 (623)
                      ........|.             ++..|++.. ..++...++++.+.+...+
T Consensus       469 l~~v~sl~W~-------------~~~~laVl~~~~~~~~~v~~v~v~g~~~~  507 (557)
T PRK13615        469 PGTPLDATWV-------------DELDVATLTLAPDGERQVELHQVGGPSKD  507 (557)
T ss_pred             cCcceeeEEc-------------CCCEEEEEeccCCCCceEEEEECCCcccc
Confidence            1123333454             455665554 3445567888888754433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.58  E-value=4.9  Score=39.85  Aligned_cols=88  Identities=13%  Similarity=0.078  Sum_probs=53.2

Q ss_pred             EEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce
Q 006979          158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK  237 (623)
Q Consensus       158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~  237 (623)
                      +.+...+|.|.+++.+.- ....-+...    ..++++.+++|.|+.-+-|..|         ..|-.+++-.|+...+.
T Consensus       100 LlS~sdDG~i~iw~~~~W-~~~~slK~H----~~~Vt~lsiHPS~KLALsVg~D---------~~lr~WNLV~Gr~a~v~  165 (362)
T KOG0294|consen  100 LLSGSDDGHIIIWRVGSW-ELLKSLKAH----KGQVTDLSIHPSGKLALSVGGD---------QVLRTWNLVRGRVAFVL  165 (362)
T ss_pred             eeeecCCCcEEEEEcCCe-EEeeeeccc----ccccceeEecCCCceEEEEcCC---------ceeeeehhhcCccceee
Confidence            445557888888887531 112222222    3458899999999865555444         45666677666532233


Q ss_pred             ecccCCCcccceeeCCCCCEEEEEE
Q 006979          238 VLVSGSDFYAFPRMDPRGERMAWIE  262 (623)
Q Consensus       238 ~l~~~~~~~~~p~wSPDG~~la~~~  262 (623)
                      .|-..+.   ...|+|.|.+.+.+.
T Consensus       166 ~L~~~at---~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  166 NLKNKAT---LVSWSPQGDHFVVSG  187 (362)
T ss_pred             ccCCcce---eeEEcCCCCEEEEEe
Confidence            3433332   367999999877665

>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]

Probab=92.49  E-value=0.17  Score=48.43  Aligned_cols=110  Identities=15%  Similarity=0.099  Sum_probs=66.6

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCc-----eEEEEECCCCCCCCchhHHHhhcc-----------CCccchHHH
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRG-----WAFVDVNYGGSTGYGREFRERLLG-----------RWGIVDVND  557 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G-----~~v~~~d~rGs~~~g~~~~~~~~~-----------~~g~~~~~D  557 (623)
                      ..|+| ++||.  +.....+..+...+...+     -.++.+|--|+-..-..+.+....           .-+..-..=
T Consensus        45 ~iPTI-fIhGs--gG~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w  121 (288)
T COG4814          45 AIPTI-FIHGS--GGTASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW  121 (288)
T ss_pred             ccceE-EEecC--CCChhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence            46765 48998  334445666666666655     456777776753332222221110           011111233


Q ss_pred             HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC------CCceeEEEecccCCC
Q 006979          558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF------RDTFKAGASLYGVSI  609 (623)
Q Consensus       558 ~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~------~~~f~a~v~~~g~~d  609 (623)
                      +..++.||.++..+  .++-++||||||......+ .+      | .+.-.|++.|..+
T Consensus       122 lk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P-~lnK~V~l~gpfN  177 (288)
T COG4814         122 LKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLP-PLNKLVSLAGPFN  177 (288)
T ss_pred             HHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCc-chhheEEeccccc
Confidence            66788899998766  6899999999999888776 43      3 3556666666555

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.28  E-value=20  Score=39.16  Aligned_cols=83  Identities=13%  Similarity=0.029  Sum_probs=42.4

Q ss_pred             ceeeCCCCCEEEEEEeccCC---------CCCCceeEEEEEEcCCCCcccceecccCC----CcccceeeC----CCCC-
Q 006979          195 DGIFDPRFNRYVTVREDRRQ---------DALNSTTEIVAIALNGQNIQEPKVLVSGS----DFYAFPRMD----PRGE-  256 (623)
Q Consensus       195 d~~~sPdG~~l~~v~~~~~~---------~~~~~~~~L~~idl~~g~~~~~~~l~~~~----~~~~~p~wS----PDG~-  256 (623)
                      .+.+++.+..|++-..+...         .+....+.|+.+|+++|+.....++....    +..+.|...    -||+ 
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            45666666666665433210         01123368999999999843222332211    122223332    2444 


Q ss_pred             -EEEEEEecCCCCCCCceEEEEEEecCCC
Q 006979          257 -RMAWIEWHHPNMPWDKAELWVGYISENG  284 (623)
Q Consensus       257 -~la~~~~~~~~~p~~~~~L~v~d~~~~~  284 (623)
                       .++|+...       ...|+.+|..++.
T Consensus       301 ~~~V~~g~~-------~G~l~ald~~tG~  322 (488)
T cd00216         301 VPAIVHAPK-------NGFFYVLDRTTGK  322 (488)
T ss_pred             eEEEEEECC-------CceEEEEECCCCc
Confidence             34455421       3459999998874

The alignment model contains an 8-bladed beta-propeller.

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=92.10  E-value=0.46  Score=47.62  Aligned_cols=153  Identities=10%  Similarity=0.025  Sum_probs=87.6

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~  273 (623)
                      ....++|--..|+.+....        ..|+++|+..+..  ++.+.-+- -.+..+|+| .. .-|+..++      ..
T Consensus       191 ~svkfNpvETsILas~~sD--------rsIvLyD~R~~~P--l~KVi~~m-RTN~IswnP-ea-fnF~~a~E------D~  251 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASD--------RSIVLYDLRQASP--LKKVILTM-RTNTICWNP-EA-FNFVAANE------DH  251 (433)
T ss_pred             eEEecCCCcchheeeeccC--------CceEEEecccCCc--cceeeeec-cccceecCc-cc-cceeeccc------cc
Confidence            3466788777777776432        5699999987652  23332222 134578999 44 34555454      33


Q ss_pred             EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe--ecccccccc
Q 006979          274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRP  350 (623)
Q Consensus       274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~--~~~~~~~~~  350 (623)
                      .||.+|+..-..  ...+..+.-    -.+-++.+||-|+ ++-.+-  +..-+||-++  .+.-+.+.  .....+-..
T Consensus       252 nlY~~DmR~l~~--p~~v~~dhv----sAV~dVdfsptG~Efvsgsy--DksIRIf~~~--~~~SRdiYhtkRMq~V~~V  321 (433)
T KOG0268|consen  252 NLYTYDMRNLSR--PLNVHKDHV----SAVMDVDFSPTGQEFVSGSY--DKSIRIFPVN--HGHSRDIYHTKRMQHVFCV  321 (433)
T ss_pred             cceehhhhhhcc--cchhhcccc----eeEEEeccCCCcchhccccc--cceEEEeecC--CCcchhhhhHhhhheeeEE
Confidence            499998764421  122222322    3456788999998 443332  2445666544  45445554  222334445


Q ss_pred             cccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       351 ~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      .|+.            |. .++++..+++.-+||+-..
T Consensus       322 k~S~------------Ds-kyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  322 KYSM------------DS-KYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             EEec------------cc-cEEEecCCCcceeeeecch
Confidence            6653            44 4666666788888987764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=92.07  E-value=4.5  Score=41.84  Aligned_cols=159  Identities=13%  Similarity=0.064  Sum_probs=91.0

Q ss_pred             eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      +|.+..+.++-+...++.|.++|+.++...++.....   -..-++..+|.|-+.+|+++....        .++.+.|+
T Consensus       234 ~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a---h~~~vn~~~fnp~~~~ilAT~S~D--------~tV~LwDl  302 (422)
T KOG0264|consen  234 AWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA---HSAEVNCVAFNPFNEFILATGSAD--------KTVALWDL  302 (422)
T ss_pred             hccccchhhheeecCCCeEEEEEcCCCCCCCcccccc---cCCceeEEEeCCCCCceEEeccCC--------CcEEEeec
Confidence            4555555566666678889999988520122222221   123356678999888888875522        66888998


Q ss_pred             CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCce--------eeeE--EEcCCCCC
Q 006979          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV--------YKRV--CVAGFDPT  298 (623)
Q Consensus       229 ~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~--------~~~~--~~~~~~~~  298 (623)
                      ..-.. .+..+....+-+.+..|||+-..|.-.+..       ..+|.+.|+..-+..        ....  .+-++-  
T Consensus       303 RnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~-------D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH--  372 (422)
T KOG0264|consen  303 RNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGT-------DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH--  372 (422)
T ss_pred             hhccc-CceeccCCCcceEEEEeCCCCCceeEeccc-------CCcEEEEeccccccccChhhhccCCcceeEEecCc--
Confidence            76431 133444445566778999999888655432       234777777643210        0111  111211  


Q ss_pred             ccccCcCceeCCCCc-EEEEEeCCCCeeeEEEE
Q 006979          299 IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKW  330 (623)
Q Consensus       299 ~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~  330 (623)
                       ...+..+.|.|.-- ++..... ++.-+||..
T Consensus       373 -~~kV~DfsWnp~ePW~I~Svae-DN~LqIW~~  403 (422)
T KOG0264|consen  373 -TAKVSDFSWNPNEPWTIASVAE-DNILQIWQM  403 (422)
T ss_pred             -ccccccccCCCCCCeEEEEecC-CceEEEeec
Confidence             14577888988866 3333333 456667654

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.02  E-value=8.3  Score=38.82  Aligned_cols=121  Identities=12%  Similarity=0.087  Sum_probs=63.8

Q ss_pred             CeeecceeeCCCC----CEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC-----C---------------c
Q 006979          190 LVSYADGIFDPRF----NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS-----D---------------F  245 (623)
Q Consensus       190 ~~~~~d~~~sPdG----~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~-----~---------------~  245 (623)
                      ....++++++...    +..+|+.+...       ..|.++|+.+++   ..++....     +               .
T Consensus        60 ~s~lndl~VD~~~~~~~~~~aYItD~~~-------~glIV~dl~~~~---s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg  129 (287)
T PF03022_consen   60 DSFLNDLVVDVRDGNCDDGFAYITDSGG-------PGLIVYDLATGK---SWRVLHNSFSPDPDAGPFTIGGESFQWPDG  129 (287)
T ss_dssp             CGGEEEEEEECTTTTS-SEEEEEEETTT-------CEEEEEETTTTE---EEEEETCGCTTS-SSEEEEETTEEEEETTS
T ss_pred             ccccceEEEEccCCCCcceEEEEeCCCc-------CcEEEEEccCCc---EEEEecCCcceeccccceeccCceEecCCC
Confidence            3567788877632    36788776432       479999999987   44432220     0               0


Q ss_pred             cccee---eCCCCCEEEEEEecCCCCCCCceEEEEEEecC---CCc---e---eeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          246 YAFPR---MDPRGERMAWIEWHHPNMPWDKAELWVGYISE---NGD---V---YKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       246 ~~~p~---wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~---~~~---~---~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      ..+.+   .+|||++|||....       ...+|.++.+-   ...   .   ...+.+-...    ........+++|.
T Consensus       130 ~~gial~~~~~d~r~LYf~~ls-------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~----~~s~g~~~D~~G~  198 (287)
T PF03022_consen  130 IFGIALSPISPDGRWLYFHPLS-------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG----SQSDGMAIDPNGN  198 (287)
T ss_dssp             EEEEEE-TTSTTS-EEEEEETT--------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-------SECEEEEETTTE
T ss_pred             ccccccCCCCCCccEEEEEeCC-------CCcEEEEEHHHhhCccccccccccccceeccccC----CCCceEEECCCCc
Confidence            11122   35699999998633       34578776431   110   0   0111221111    1223456667775


Q ss_pred             EEEEEeCCCCeeeEEEEecCC
Q 006979          314 LFFVTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~  334 (623)
                      |||. +.  ....|+++++.+
T Consensus       199 ly~~-~~--~~~aI~~w~~~~  216 (287)
T PF03022_consen  199 LYFT-DV--EQNAIGCWDPDG  216 (287)
T ss_dssp             EEEE-EC--CCTEEEEEETTT
T ss_pred             EEEe-cC--CCCeEEEEeCCC
Confidence            5554 43  345788898876

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=91.99  E-value=16  Score=37.31  Aligned_cols=113  Identities=12%  Similarity=0.073  Sum_probs=67.2

Q ss_pred             CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (623)
Q Consensus       243 ~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~  322 (623)
                      .+.+....|++ -..++-.+|||.        |.+.|+..++.  ...+...      ..+..+..+|..+|+.....  
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHT--------Ik~WDletg~~--~~~~~~~------ksl~~i~~~~~~~Ll~~gss--  320 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHT--------IKVWDLETGGL--KSTLTTN------KSLNCISYSPLSKLLASGSS--  320 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccce--------EEEEEeecccc--eeeeecC------cceeEeecccccceeeecCC--
Confidence            35566778988 445666778875        88889988853  2222222      24456677787665544322  


Q ss_pred             CeeeEEEEecCCCeEE----EEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          323 GFWNLHKWIESNNEVL----AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       323 g~~~L~~~d~~~~~~~----~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                       ..+|-++||.++.-.    .+.....-+....|.+            .+...+++..-++...||-+.
T Consensus       321 -dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp------------~~~~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  321 -DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP------------TNEFQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             -CCceeecCCCCCCCceeEEeeecchhhhhheecCC------------CCceEEEEEecCCeEEEEEec
Confidence             246777898776422    2222222344445554            566677777777777777544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.89  E-value=12  Score=35.75  Aligned_cols=135  Identities=13%  Similarity=0.156  Sum_probs=64.3

Q ss_pred             eeeCCCCCEEEEEE-e-cCCC-CCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979          249 PRMDPRGERMAWIE-W-HHPN-MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW  325 (623)
Q Consensus       249 p~wSPDG~~la~~~-~-~~~~-~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~  325 (623)
                      -..+||||+  |.. + +.+. ...-.+.||..-+...     ..++.+.-    .......|+.|-+.+|..+.  -..
T Consensus       114 gkvdP~Gry--y~GtMad~~~~le~~~g~Ly~~~~~h~-----v~~i~~~v----~IsNgl~Wd~d~K~fY~iDs--ln~  180 (310)
T KOG4499|consen  114 GKVDPDGRY--YGGTMADFGDDLEPIGGELYSWLAGHQ-----VELIWNCV----GISNGLAWDSDAKKFYYIDS--LNY  180 (310)
T ss_pred             CccCCCCce--eeeeeccccccccccccEEEEeccCCC-----ceeeehhc----cCCccccccccCcEEEEEcc--Cce
Confidence            457999997  443 2 2111 0011455665443322     22333222    34467899999884444444  234


Q ss_pred             eE--EEEecCCCe---EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce-eecccC
Q 006979          326 NL--HKWIESNNE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIP  399 (623)
Q Consensus       326 ~L--~~~d~~~~~---~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~-~~lt~~  399 (623)
                      .+  |.+|..+|.   .+.|.....  ..+.=++..+.+.+-    ..+.||++.-..  ..++++|+.+|++ ..+-.|
T Consensus       181 ~V~a~dyd~~tG~~snr~~i~dlrk--~~~~e~~~PDGm~ID----~eG~L~Va~~ng--~~V~~~dp~tGK~L~eiklP  252 (310)
T KOG4499|consen  181 EVDAYDYDCPTGDLSNRKVIFDLRK--SQPFESLEPDGMTID----TEGNLYVATFNG--GTVQKVDPTTGKILLEIKLP  252 (310)
T ss_pred             EEeeeecCCCcccccCcceeEEecc--CCCcCCCCCCcceEc----cCCcEEEEEecC--cEEEEECCCCCcEEEEEEcC
Confidence            45  666777764   234432211  011111222333332    233455554333  4588899988865 334444


Q ss_pred             CcceE
Q 006979          400 FTDID  404 (623)
Q Consensus       400 ~~~v~  404 (623)
                      -..+.
T Consensus       253 t~qit  257 (310)
T KOG4499|consen  253 TPQIT  257 (310)
T ss_pred             CCceE
Confidence            33333

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=91.87  E-value=3.3  Score=46.13  Aligned_cols=144  Identities=15%  Similarity=0.245  Sum_probs=85.2

Q ss_pred             ceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEEEe
Q 006979           93 GTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS  171 (623)
Q Consensus        93 ~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~~d  171 (623)
                      ++.++= +..|||.+..+.    . |-+.... |+++..++..+.      .+--|-+..+....+++.+..-.+|-+..
T Consensus      1029 GidfDC~e~mvyWtDv~g~----S-I~rasL~-G~Ep~ti~n~~L------~SPEGiAVDh~~Rn~ywtDS~lD~IevA~ 1096 (1289)
T KOG1214|consen 1029 GIDFDCRERMVYWTDVAGR----S-ISRASLE-GAEPETIVNSGL------ISPEGIAVDHIRRNMYWTDSVLDKIEVAL 1096 (1289)
T ss_pred             eeecccccceEEEeecCCC----c-ccccccc-CCCCceeecccC------CCccceeeeeccceeeeeccccchhheee
Confidence            344433 667899886643    2 3333333 345655554431      11113345555667888865555677777


Q ss_pred             CCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cCCCccccee
Q 006979          172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPR  250 (623)
Q Consensus       172 ~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~~~~~~~p~  250 (623)
                      |++.  ..+.|-...   -..-.....+|-++.|+|+.+++.+      -.|-..++++..   .+.|. .+-...++..
T Consensus      1097 LdG~--~rkvLf~td---LVNPR~iv~D~~rgnLYwtDWnRen------PkIets~mDG~N---rRilin~DigLPNGLt 1162 (1289)
T KOG1214|consen 1097 LDGS--ERKVLFYTD---LVNPRAIVVDPIRGNLYWTDWNREN------PKIETSSMDGEN---RRILINTDIGLPNGLT 1162 (1289)
T ss_pred             cCCc--eeeEEEeec---ccCcceEEeecccCceeeccccccC------CcceeeccCCcc---ceEEeecccCCCCCce
Confidence            7754  444443220   1122345678888899998776533      346677788765   45544 4445567788


Q ss_pred             eCCCCCEEEEEE
Q 006979          251 MDPRGERMAWIE  262 (623)
Q Consensus       251 wSPDG~~la~~~  262 (623)
                      |.|..|.|.|+.
T Consensus      1163 fdpfs~~LCWvD 1174 (1289)
T KOG1214|consen 1163 FDPFSKLLCWVD 1174 (1289)
T ss_pred             eCcccceeeEEe
Confidence            999999999985

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=91.87  E-value=3.7  Score=43.10  Aligned_cols=133  Identities=11%  Similarity=0.048  Sum_probs=78.5

Q ss_pred             EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      |.++...++.+...+|.+.+||+.+.  .+..--..  .-...-.+.+|||....|++...-        .-.|+.+|..
T Consensus       172 ys~skr~lL~~asd~G~VtlwDv~g~--sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~--------Dkki~~yD~~  239 (673)
T KOG4378|consen  172 YSPSKRFLLSIASDKGAVTLWDVQGM--SPIFHASE--AHSAPCRGICFSPSNEALLVSVGY--------DKKINIYDIR  239 (673)
T ss_pred             cccccceeeEeeccCCeEEEEeccCC--Ccccchhh--hccCCcCcceecCCccceEEEecc--------cceEEEeecc
Confidence            44445556666667788999998753  32221111  001123468899988766654331        1569999987


Q ss_pred             CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws  309 (623)
                      ..+.  ...|+...-+ ...+|+|+|.+|+--.        .+.+|+.+|+.....  ...++...+    .++..++|-
T Consensus       240 s~~s--~~~l~y~~Pl-stvaf~~~G~~L~aG~--------s~G~~i~YD~R~~k~--Pv~v~sah~----~sVt~vafq  302 (673)
T KOG4378|consen  240 SQAS--TDRLTYSHPL-STVAFSECGTYLCAGN--------SKGELIAYDMRSTKA--PVAVRSAHD----ASVTRVAFQ  302 (673)
T ss_pred             cccc--cceeeecCCc-ceeeecCCceEEEeec--------CCceEEEEecccCCC--CceEeeecc----cceeEEEee
Confidence            6542  3455544443 4478999999876432        256799999986632  233333334    455666665


Q ss_pred             CC
Q 006979          310 SK  311 (623)
Q Consensus       310 ~D  311 (623)
                      +-
T Consensus       303 ~s  304 (673)
T KOG4378|consen  303 PS  304 (673)
T ss_pred             ec
Confidence            43

>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=91.80  E-value=0.31  Score=49.99  Aligned_cols=88  Identities=15%  Similarity=0.056  Sum_probs=60.6

Q ss_pred             HHcCceEEEEECCCCCCC---Cchh-HHHhhccC--CccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-
Q 006979          520 WTSRGWAFVDVNYGGSTG---YGRE-FRERLLGR--WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-  592 (623)
Q Consensus       520 ~a~~G~~v~~~d~rGs~~---~g~~-~~~~~~~~--~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-  592 (623)
                      -.+++-.++-+++|--|.   +|.. +..+-.-.  .-++...|....+.+|++........|.++|+||||+++.+.= 
T Consensus       107 Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRl  186 (492)
T KOG2183|consen  107 APELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRL  186 (492)
T ss_pred             hHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHh
Confidence            345688888888885333   4444 22111111  1235578999999999887556678999999999999999887 


Q ss_pred             cCCCceeEEEe-cccC
Q 006979          593 AFRDTFKAGAS-LYGV  607 (623)
Q Consensus       593 ~~~~~f~a~v~-~~g~  607 (623)
                      .+|.+..++.+ .+|+
T Consensus       187 KYPHiv~GAlAaSAPv  202 (492)
T KOG2183|consen  187 KYPHIVLGALAASAPV  202 (492)
T ss_pred             cChhhhhhhhhccCce
Confidence            88987766554 4454

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.63  E-value=15  Score=36.20  Aligned_cols=197  Identities=11%  Similarity=-0.038  Sum_probs=95.0

Q ss_pred             eCCEEEEEeCCCC--cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          153 FGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       153 s~d~l~f~~~~~~--~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      .++.++-+....|  .|..+|+++|  +..+-..-  ++..+-...+.-  +.+|+-..+..        +..+++|.++
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg--~~~~~~~l--~~~~FgEGit~~--~d~l~qLTWk~--------~~~f~yd~~t  119 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETG--KVLQSVPL--PPRYFGEGITIL--GDKLYQLTWKE--------GTGFVYDPNT  119 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTS--SEEEEEE---TTT--EEEEEEE--TTEEEEEESSS--------SEEEEEETTT
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCC--cEEEEEEC--CccccceeEEEE--CCEEEEEEecC--------CeEEEEcccc
Confidence            3456777765555  4999999987  43322221  112222233332  45677666643        6789999986


Q ss_pred             CCcccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979          231 QNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (623)
Q Consensus       231 g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws  309 (623)
                      -+.  +..+.-. .++    -...||+.|+..  |.      ..+|+..|.++-.......+..+..  -...+....|-
T Consensus       120 l~~--~~~~~y~~EGW----GLt~dg~~Li~S--DG------S~~L~~~dP~~f~~~~~i~V~~~g~--pv~~LNELE~i  183 (264)
T PF05096_consen  120 LKK--IGTFPYPGEGW----GLTSDGKRLIMS--DG------SSRLYFLDPETFKEVRTIQVTDNGR--PVSNLNELEYI  183 (264)
T ss_dssp             TEE--EEEEE-SSS------EEEECSSCEEEE---S------SSEEEEE-TTT-SEEEEEE-EETTE--E---EEEEEEE
T ss_pred             ceE--EEEEecCCcce----EEEcCCCEEEEE--CC------ccceEEECCcccceEEEEEEEECCE--ECCCcEeEEEE
Confidence            431  3333222 221    134688876543  43      3468888866543222222222211  11345667775


Q ss_pred             CCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccc---ccc-cccc---cccCcceeEEeecCCCCEEEEEEEECCeEE
Q 006979          310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---EFS-RPLW---VFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (623)
Q Consensus       310 ~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~---~~~-~~~w---~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~  382 (623)
                       ||.+| ..-.  -...|.++||.+|+......-..   ... ...-   ..-.+..++.   |+.+.++++-  .-++.
T Consensus       184 -~G~Iy-ANVW--~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd---~~~~~l~vTG--K~Wp~  254 (264)
T PF05096_consen  184 -NGKIY-ANVW--QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYD---PETDRLFVTG--KLWPK  254 (264)
T ss_dssp             -TTEEE-EEET--TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEE---TTTTEEEEEE--TT-SE
T ss_pred             -cCEEE-EEeC--CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEe---CCCCEEEEEe--CCCCc
Confidence             77544 3333  23479999999998776542100   000 0000   0011233443   2677777775  45677


Q ss_pred             EEEEeC
Q 006979          383 LGILDD  388 (623)
Q Consensus       383 L~~~d~  388 (623)
                      +|.+.+
T Consensus       255 lyeV~l  260 (264)
T PF05096_consen  255 LYEVKL  260 (264)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            777654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases

Probab=91.63  E-value=0.14  Score=49.39  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=17.6

Q ss_pred             CCceEEEEcChHHHHHHHHh
Q 006979          573 EKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~  592 (623)
                      ..+|.++|||+||.++-.++
T Consensus        77 ~~~IsfIgHSLGGli~r~al   96 (217)
T PF05057_consen   77 IRKISFIGHSLGGLIARYAL   96 (217)
T ss_pred             cccceEEEecccHHHHHHHH
Confidence            36899999999999998776

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=91.62  E-value=4.7  Score=44.67  Aligned_cols=150  Identities=13%  Similarity=0.072  Sum_probs=88.8

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++++...|+.|-.+|+...  ........   ......|..|+|.-...++...+.        +.|-..|+.--. ..
T Consensus       147 ~iliSGSQDg~vK~~DlR~~--~S~~t~~~---nSESiRDV~fsp~~~~~F~s~~ds--------G~lqlWDlRqp~-r~  212 (839)
T KOG0269|consen  147 NILISGSQDGTVKCWDLRSK--KSKSTFRS---NSESIRDVKFSPGYGNKFASIHDS--------GYLQLWDLRQPD-RC  212 (839)
T ss_pred             cEEEecCCCceEEEEeeecc--cccccccc---cchhhhceeeccCCCceEEEecCC--------ceEEEeeccCch-hH
Confidence            68888888888888998765  33344332   134567899999554444444333        557777886532 11


Q ss_pred             ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-E
Q 006979          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L  314 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l  314 (623)
                      ..+++...+++.-..|+|++.+||--..|  .      .+.+.++.+... .....+. .-    ..+..+.|-|+-+ .
T Consensus       213 ~~k~~AH~GpV~c~nwhPnr~~lATGGRD--K------~vkiWd~t~~~~-~~~~tIn-Ti----apv~rVkWRP~~~~h  278 (839)
T KOG0269|consen  213 EKKLTAHNGPVLCLNWHPNREWLATGGRD--K------MVKIWDMTDSRA-KPKHTIN-TI----APVGRVKWRPARSYH  278 (839)
T ss_pred             HHHhhcccCceEEEeecCCCceeeecCCC--c------cEEEEeccCCCc-cceeEEe-ec----ceeeeeeeccCccch
Confidence            34455555666667899999998855422  1      255666665421 1111111 11    3456889999977 4


Q ss_pred             EEEEeCCCCeeeEEEEecCC
Q 006979          315 FFVTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       315 ~~~~~~~~g~~~L~~~d~~~  334 (623)
                      +..+.- -+...++++|..-
T Consensus       279 LAtcsm-v~dtsV~VWDvrR  297 (839)
T KOG0269|consen  279 LATCSM-VVDTSVHVWDVRR  297 (839)
T ss_pred             hhhhhc-cccceEEEEeecc
Confidence            433333 3455677777643

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.52  E-value=7.9  Score=39.80  Aligned_cols=159  Identities=11%  Similarity=-0.032  Sum_probs=80.5

Q ss_pred             CceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCC---CEEEEEEeccCCCCCCcee
Q 006979          147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF---NRYVTVREDRRQDALNSTT  221 (623)
Q Consensus       147 ~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG---~~l~~v~~~~~~~~~~~~~  221 (623)
                      +....+++|  .|+.+. .+ ...++++++| .....+++.  ....++...+|+-|+   ...++....+.+.     -
T Consensus       189 V~DL~FS~dgk~lasig-~d-~~~VW~~~~g-~~~a~~t~~--~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~-----v  258 (398)
T KOG0771|consen  189 VKDLDFSPDGKFLASIG-AD-SARVWSVNTG-AALARKTPF--SKDEMFSSCRFSVDNAQETLRLAASQFPGGG-----V  258 (398)
T ss_pred             cccceeCCCCcEEEEec-CC-ceEEEEeccC-chhhhcCCc--ccchhhhhceecccCCCceEEEEEecCCCCc-----e
Confidence            445555655  333332 33 4777777776 345556643  335667777777766   3333322222111     2


Q ss_pred             EEEEEEcCCC-CcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          222 EIVAIALNGQ-NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       222 ~L~~idl~~g-~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      .++.+.+-.+ .....++.....+.......|+||+.+|.-..+.        .+-+++...-.   ....+.... .  
T Consensus       259 ~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG--------sVai~~~~~lq---~~~~vk~aH-~--  324 (398)
T KOG0771|consen  259 RLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG--------SVAIYDAKSLQ---RLQYVKEAH-L--  324 (398)
T ss_pred             eEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC--------cEEEEEeceee---eeEeehhhh-e--
Confidence            2222222222 1000233344444566788999999998776433        26666655431   122222221 1  


Q ss_pred             ccCcCceeCCCCc-EEEEEeCCCCeeeEEEEe
Q 006979          301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       301 ~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d  331 (623)
                      ..+....|+||.+ +.=++..  ...+|..+.
T Consensus       325 ~~VT~ltF~Pdsr~~~svSs~--~~~~v~~l~  354 (398)
T KOG0771|consen  325 GFVTGLTFSPDSRYLASVSSD--NEAAVTKLA  354 (398)
T ss_pred             eeeeeEEEcCCcCcccccccC--CceeEEEEe
Confidence            4677889999987 4433332  234455443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=91.38  E-value=13  Score=37.11  Aligned_cols=99  Identities=13%  Similarity=0.195  Sum_probs=59.7

Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC-cccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceE
Q 006979          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE  274 (623)
Q Consensus       196 ~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~-~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~  274 (623)
                      -+|++|+..++....+         .++.++...+.. .+....|......+....|+|-+.+|.-...|+.        
T Consensus        16 hAwn~drt~iAv~~~~---------~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn--------   78 (361)
T KOG1523|consen   16 HAWNSDRTQIAVSPNN---------HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN--------   78 (361)
T ss_pred             eeecCCCceEEeccCC---------ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC--------
Confidence            5799999998876554         345555544443 3334555555556777899999988987665542        


Q ss_pred             EEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979          275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (623)
Q Consensus       275 L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~  315 (623)
                      -|+.....++.-.+..++...+    .....+.|+|.+..+
T Consensus        79 ayVw~~~~~~~WkptlvLlRiN----rAAt~V~WsP~enkF  115 (361)
T KOG1523|consen   79 AYVWTQPSGGTWKPTLVLLRIN----RAATCVKWSPKENKF  115 (361)
T ss_pred             ccccccCCCCeeccceeEEEec----cceeeEeecCcCceE
Confidence            2444442333322333344444    455678999987633

>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]

Probab=91.34  E-value=1.2  Score=42.07  Aligned_cols=49  Identities=18%  Similarity=0.188  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhc--C-C------CceeEEEecccCCCH
Q 006979          558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--F-R------DTFKAGASLYGVSIP  610 (623)
Q Consensus       558 ~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~--~-~------~~f~a~v~~~g~~d~  610 (623)
                      +....+|+.++|..|    ||+|+|.|+.++.+++.  . .      -.|+-+|.++|..-.
T Consensus        92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~  149 (230)
T KOG2551|consen   92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFP  149 (230)
T ss_pred             HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCC
Confidence            555667889999998    89999999999988774  1 1      147888998887655

>PLN02193 nitrile-specifier protein

Probab=91.21  E-value=26  Score=38.16  Aligned_cols=164  Identities=10%  Similarity=-0.039  Sum_probs=75.8

Q ss_pred             eeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979          220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (623)
Q Consensus       220 ~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~  299 (623)
                      .+.+|++|+.+.++..+..+...+.......-...+.+|+...-.....  ....++++|+.+.    ....+.......
T Consensus       243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~--~~~~~~~yd~~t~----~W~~~~~~~~~~  316 (470)
T PLN02193        243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA--RLKTLDSYNIVDK----KWFHCSTPGDSF  316 (470)
T ss_pred             CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC--CcceEEEEECCCC----EEEeCCCCCCCC
Confidence            4679999999887532222211111111111112344566554221110  1345788887765    233222111000


Q ss_pred             cccCcCceeCCCCcEEEEEeCC-CCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979          300 VESPTEPKWSSKGELFFVTDRK-NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (623)
Q Consensus       300 ~~~~~~~~ws~DG~l~~~~~~~-~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~  378 (623)
                      ........-.-++++|++.-.. .....++.+|+.+.+++.+..... ...+..   ......+    + +.||+.--..
T Consensus       317 ~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~-~P~~R~---~~~~~~~----~-~~iyv~GG~~  387 (470)
T PLN02193        317 SIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGV-RPSERS---VFASAAV----G-KHIVIFGGEI  387 (470)
T ss_pred             CCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCC-CCCCcc---eeEEEEE----C-CEEEEECCcc
Confidence            0000111122366766554321 123578999999999888753210 000111   1122232    3 3444432211


Q ss_pred             ----------C--eEEEEEEeCCCCceeeccc
Q 006979          379 ----------G--RSYLGILDDFGHSLSLLDI  398 (623)
Q Consensus       379 ----------g--~~~L~~~d~~~~~~~~lt~  398 (623)
                                +  ...++.+|+.+.+++.+..
T Consensus       388 ~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~  419 (470)
T PLN02193        388 AMDPLAHVGPGQLTDGTFALDTETLQWERLDK  419 (470)
T ss_pred             CCccccccCccceeccEEEEEcCcCEEEEccc
Confidence                      1  1358999999999987763

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=91.18  E-value=28  Score=38.63  Aligned_cols=136  Identities=16%  Similarity=0.093  Sum_probs=77.2

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccce-eeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFP-RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p-~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~  299 (623)
                      ++|+++|.++.+.  .+++.+..+-+... .|-|+.++||... +.+       +|.++++.+.    .-.++.+..   
T Consensus       303 Qnl~l~d~~~l~i--~k~ivG~ndEI~Dm~~lG~e~~~laVAT-Ns~-------~lr~y~~~~~----~c~ii~GH~---  365 (775)
T KOG0319|consen  303 QNLFLYDEDELTI--VKQIVGYNDEILDMKFLGPEESHLAVAT-NSP-------ELRLYTLPTS----YCQIIPGHT---  365 (775)
T ss_pred             ceEEEEEccccEE--ehhhcCCchhheeeeecCCccceEEEEe-CCC-------ceEEEecCCC----ceEEEeCch---
Confidence            6799999888763  35566555444333 4889999998776 433       3666677665    344777776   


Q ss_pred             cccCcCce-eCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEe---ecccccccccccccCcceeEEeecCCCCEEEEEE
Q 006979          300 VESPTEPK-WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY  375 (623)
Q Consensus       300 ~~~~~~~~-ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~---~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~  375 (623)
                       ..+.... | .+| .++.+-.++..-.||++|-...+.-.+.   .....++.....            ..+-.++++.
T Consensus       366 -e~vlSL~~~-~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~------------~~~asffvsv  430 (775)
T KOG0319|consen  366 -EAVLSLDVW-SSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGS------------KLGASFFVSV  430 (775)
T ss_pred             -hheeeeeec-ccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeec------------ccCccEEEEe
Confidence             3444444 5 355 4444444356778999853332222221   111222222111            1344567777


Q ss_pred             EECCeEEEEEEeC
Q 006979          376 RQNGRSYLGILDD  388 (623)
Q Consensus       376 ~~~g~~~L~~~d~  388 (623)
                      ..+..-.+|-++.
T Consensus       431 S~D~tlK~W~l~~  443 (775)
T KOG0319|consen  431 SQDCTLKLWDLPK  443 (775)
T ss_pred             cCCceEEEecCCC
Confidence            7777778887754

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.77  E-value=19  Score=38.71  Aligned_cols=29  Identities=10%  Similarity=-0.008  Sum_probs=20.6

Q ss_pred             CCHHHHhccCCccCceEEcCCCcEEEEee
Q 006979           79 LTADVVSGASKRLGGTAVDGHGRLIWLES  107 (623)
Q Consensus        79 ~t~~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (623)
                      ++++.+.+.-..+.++.+.|++++|..+.
T Consensus        20 f~~~~va~GL~~Pw~maflPDG~llVtER   48 (454)
T TIGR03606        20 FDKKVLLSGLNKPWALLWGPDNQLWVTER   48 (454)
T ss_pred             cEEEEEECCCCCceEEEEcCCCeEEEEEe
Confidence            45666666556778899988667777664

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.75  E-value=16  Score=38.47  Aligned_cols=149  Identities=10%  Similarity=0.071  Sum_probs=86.0

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      +++++...+..|.+-++|.++. .-.+++-..    .....-..|+|+++.++....|.        ..+-..|+++..+
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~r-~iLR~~~ah----~apv~~~~f~~~d~t~l~s~sDd--------~v~k~~d~s~a~v  145 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKSR-VILRQLYAH----QAPVHVTKFSPQDNTMLVSGSDD--------KVVKYWDLSTAYV  145 (487)
T ss_pred             CCeEEEccCCcCcEEEeccccH-HHHHHHhhc----cCceeEEEecccCCeEEEecCCC--------ceEEEEEcCCcEE
Confidence            3477777777888889986532 112333321    12233356899998887766554        2233446666651


Q ss_pred             ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       234 ~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                        ...+....|.+..-.|+|-...|++...-+       ..|.++|....+   .+......+    ..+..+.+.|.|+
T Consensus       146 --~~~l~~htDYVR~g~~~~~~~hivvtGsYD-------g~vrl~DtR~~~---~~v~elnhg----~pVe~vl~lpsgs  209 (487)
T KOG0310|consen  146 --QAELSGHTDYVRCGDISPANDHIVVTGSYD-------GKVRLWDTRSLT---SRVVELNHG----CPVESVLALPSGS  209 (487)
T ss_pred             --EEEecCCcceeEeeccccCCCeEEEecCCC-------ceEEEEEeccCC---ceeEEecCC----CceeeEEEcCCCC
Confidence              123455567766778999988888775322       235666665542   222222233    4466788889887


Q ss_pred             EEEEEeCCCCeeeEEEEecCCC
Q 006979          314 LFFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~  335 (623)
                      ++..+    |...+-.+|+.+|
T Consensus       210 ~iasA----gGn~vkVWDl~~G  227 (487)
T KOG0310|consen  210 LIASA----GGNSVKVWDLTTG  227 (487)
T ss_pred             EEEEc----CCCeEEEEEecCC
Confidence            55443    2334556677644

>PHA02713 hypothetical protein; Provisional

Probab=90.69  E-value=32  Score=38.35  Aligned_cols=218  Identities=11%  Similarity=0.043  Sum_probs=108.7

Q ss_pred             EEeCCEEEEEeCCC------CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          151 RIFGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       151 ~~s~d~l~f~~~~~------~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      +.-++.||+....+      ..++.+|+.++  .-..+.+-   +..|.......-+| +|+.+-.....   .....+.
T Consensus       300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n--~W~~~~~m---~~~R~~~~~~~~~g-~IYviGG~~~~---~~~~sve  370 (557)
T PHA02713        300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENK--IHVELPPM---IKNRCRFSLAVIDD-TIYAIGGQNGT---NVERTIE  370 (557)
T ss_pred             EEECCEEEEEcCCCCCCCccceEEEEECCCC--eEeeCCCC---cchhhceeEEEECC-EEEEECCcCCC---CCCceEE
Confidence            33456677665432      34889998765  34444442   11222222223344 45554332111   1235688


Q ss_pred             EEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC----------------CceEEEEEEecCCCceee
Q 006979          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW----------------DKAELWVGYISENGDVYK  288 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~----------------~~~~L~v~d~~~~~~~~~  288 (623)
                      ++|+.+.++.....+........  .-.-+| +|+.+.......-|                ....+.++|..++    .
T Consensus       371 ~Ydp~~~~W~~~~~mp~~r~~~~--~~~~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td----~  443 (557)
T PHA02713        371 CYTMGDDKWKMLPDMPIALSSYG--MCVLDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN----I  443 (557)
T ss_pred             EEECCCCeEEECCCCCccccccc--EEEECC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCC----e
Confidence            89998876533323322211111  122344 47766532211000                1234677776655    3


Q ss_pred             eEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC--Ce-eeEEEEecCC-CeEEEEeecccccccccccccCcceeEEee
Q 006979          289 RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN--GF-WNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQS  364 (623)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~--g~-~~L~~~d~~~-~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~  364 (623)
                      +..+.....   .......-.-+|+||.+.....  +. ..+.+|||.+ ++++.+.+-......       .....+  
T Consensus       444 W~~v~~m~~---~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-------~~~~~~--  511 (557)
T PHA02713        444 WETLPNFWT---GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-------LHTILH--  511 (557)
T ss_pred             EeecCCCCc---ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-------ceeEEE--
Confidence            333332210   1111122334677877754311  11 2467999998 788877643221111       123333  


Q ss_pred             cCCCCEEEEEEEECCeEEEEEEeCCCCceeecccC
Q 006979          365 HGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP  399 (623)
Q Consensus       365 s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~  399 (623)
                         ++.||+....+|...+..+|+.+.+|+.+...
T Consensus       512 ---~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~  543 (557)
T PHA02713        512 ---DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQ  543 (557)
T ss_pred             ---CCEEEEEeeecceeehhhcCcccccccchhhh
Confidence               45777776666666688889998888877543

>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2

Probab=90.60  E-value=0.28  Score=51.83  Aligned_cols=81  Identities=12%  Similarity=-0.029  Sum_probs=53.4

Q ss_pred             cCCHHhHHHHcCceEE-----EE-ECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHH
Q 006979          512 ILNLSIQYWTSRGWAF-----VD-VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG  585 (623)
Q Consensus       512 ~~~~~~~~~a~~G~~v-----~~-~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG  585 (623)
                      .|...++.|.+.||..     .+ +|.|=+.          .  -...-...+...|+.+.+..   .++|.|+||||||
T Consensus        66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~----------~--~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGg  130 (389)
T PF02450_consen   66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSP----------A--ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGG  130 (389)
T ss_pred             hHHHHHHHHHhcCcccCCEEEEEeechhhch----------h--hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCc
Confidence            5667888899888764     22 4555321          1  00112355666677666543   5899999999999


Q ss_pred             HHHHHHh-cCC------CceeEEEecccC
Q 006979          586 YTTLAAL-AFR------DTFKAGASLYGV  607 (623)
Q Consensus       586 ~~~~~~~-~~~------~~f~a~v~~~g~  607 (623)
                      .++...+ ..+      +.++..|+++++
T Consensus       131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p  159 (389)
T PF02450_consen  131 LVARYFLQWMPQEEWKDKYIKRFISIGTP  159 (389)
T ss_pred             hHHHHHHHhccchhhHHhhhhEEEEeCCC
Confidence            9999888 442      247788887765

3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process

>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function

Probab=90.32  E-value=0.41  Score=45.17  Aligned_cols=91  Identities=13%  Similarity=0.086  Sum_probs=55.8

Q ss_pred             hHHHHcCceEEEEECCCCCCCCchh-HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC
Q 006979          517 IQYWTSRGWAFVDVNYGGSTGYGRE-FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF  594 (623)
Q Consensus       517 ~~~~a~~G~~v~~~d~rGs~~~g~~-~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~  594 (623)
                      +..|.+. ..|++|=||-.+-+..- -............+.|+.+|.+|-+++-. +...+.|.|||.|+.+.+.++ .+
T Consensus        39 as~F~~~-~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~  116 (207)
T PF11288_consen   39 ASAFNGV-CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEE  116 (207)
T ss_pred             hhhhhcC-CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHH
Confidence            3334444 57888888864322111 00001111223457899999997666522 125799999999999999998 32


Q ss_pred             -------CCceeEEEecccCCC
Q 006979          595 -------RDTFKAGASLYGVSI  609 (623)
Q Consensus       595 -------~~~f~a~v~~~g~~d  609 (623)
                             ..+++|-+..++++.
T Consensus       117 ~~~~pl~~rLVAAYliG~~v~~  138 (207)
T PF11288_consen  117 IAGDPLRKRLVAAYLIGYPVTV  138 (207)
T ss_pred             hcCchHHhhhheeeecCccccH
Confidence                   235667776677654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=90.27  E-value=2.1  Score=43.65  Aligned_cols=52  Identities=4%  Similarity=-0.028  Sum_probs=37.1

Q ss_pred             cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      ...+||||+..|.+.+.+..        ++++|+..+.   ....+.+..    .++...+|.|-++
T Consensus       127 ydL~Ws~d~~~l~s~s~dns--------~~l~Dv~~G~---l~~~~~dh~----~yvqgvawDpl~q  178 (434)
T KOG1009|consen  127 YDLAWSPDSNFLVSGSVDNS--------VRLWDVHAGQ---LLAILDDHE----HYVQGVAWDPLNQ  178 (434)
T ss_pred             hhhhccCCCceeeeeeccce--------EEEEEeccce---eEeeccccc----cccceeecchhhh
Confidence            34789999999988776543        6777887762   233333333    7889999999887

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=90.25  E-value=1.1  Score=36.26  Aligned_cols=53  Identities=15%  Similarity=0.112  Sum_probs=36.1

Q ss_pred             CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      +|+|+.+|+.++  +.+.|..+    -..-+..++|||+.+|+++.-.        ..+|.++-+.+
T Consensus        36 ~GRll~ydp~t~--~~~vl~~~----L~fpNGVals~d~~~vlv~Et~--------~~Ri~rywl~G   88 (89)
T PF03088_consen   36 TGRLLRYDPSTK--ETTVLLDG----LYFPNGVALSPDESFVLVAETG--------RYRILRYWLKG   88 (89)
T ss_dssp             -EEEEEEETTTT--EEEEEEEE----ESSEEEEEE-TTSSEEEEEEGG--------GTEEEEEESSS
T ss_pred             CcCEEEEECCCC--eEEEehhC----CCccCeEEEcCCCCEEEEEecc--------CceEEEEEEeC
Confidence            478999999987  67777764    2344567799999998875432        25677766653

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []

Probab=90.25  E-value=0.45  Score=42.00  Aligned_cols=52  Identities=19%  Similarity=0.056  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-c---C----CCceeEEEecccCC
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-A---F----RDTFKAGASLYGVS  608 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~---~----~~~f~a~v~~~g~~  608 (623)
                      .+.+...++.+.++..  +.+|.+.|||+||.++..++ .   +    +...++..-..|.+
T Consensus        47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~  106 (140)
T PF01764_consen   47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV  106 (140)
T ss_dssp             HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred             HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence            4456666666665543  47999999999999998776 2   1    24567766666654

Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=90.22  E-value=2.5  Score=42.26  Aligned_cols=144  Identities=15%  Similarity=0.105  Sum_probs=78.5

Q ss_pred             CCCCcCCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeee-cC-CceEE
Q 006979           74 SWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQE-YG-GGAFR  151 (623)
Q Consensus        74 ~w~s~~t~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~-~g-~~~~~  151 (623)
                      .|+.|.--++.-+.-+.|.++... ++...|+..-.+- ....-||-...+||-...+...+     .+.+ .. .-+-.
T Consensus       137 ~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~s-D~~~gWR~~~~~gG~vidv~s~e-----vl~~GLsmPhSPR  209 (335)
T TIGR03032       137 LWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQS-DVADGWREGRRDGGCVIDIPSGE-----VVASGLSMPHSPR  209 (335)
T ss_pred             ccCCccccccCccCceeecceeee-CCeEEEEEEeecc-CCcccccccccCCeEEEEeCCCC-----EEEcCccCCcCCc
Confidence            377775444444455889999987 5556555432221 11224655544444222221111     0100 00 11233


Q ss_pred             EeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC------C-----CCce
Q 006979          152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD------A-----LNST  220 (623)
Q Consensus       152 ~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~------~-----~~~~  220 (623)
                      |.+++++|.+...+.|+.+|+++|  ..+.+...    +.+.....|.  |++++..+....+.      |     ....
T Consensus       210 WhdgrLwvldsgtGev~~vD~~~G--~~e~Va~v----pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~  281 (335)
T TIGR03032       210 WYQGKLWLLNSGRGELGYVDPQAG--KFQPVAFL----PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALG  281 (335)
T ss_pred             EeCCeEEEEECCCCEEEEEcCCCC--cEEEEEEC----CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhc
Confidence            456789999988999999999877  66666654    3445566676  77665554432211      0     0123


Q ss_pred             eEEEEEEcCCCC
Q 006979          221 TEIVAIALNGQN  232 (623)
Q Consensus       221 ~~L~~idl~~g~  232 (623)
                      ..|+++|+.+|.
T Consensus       282 CGv~vidl~tG~  293 (335)
T TIGR03032       282 CGVAVIDLNSGD  293 (335)
T ss_pred             ccEEEEECCCCC
Confidence            457777777665

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK13615 lipoprotein LpqB; Provisional

Probab=89.96  E-value=17  Score=40.19  Aligned_cols=159  Identities=9%  Similarity=0.019  Sum_probs=88.4

Q ss_pred             cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeee
Q 006979          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN  326 (623)
Q Consensus       247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~  326 (623)
                      ..+..|+||+.+|++..        ...|++-...+.    ...++.+      ..+..|.|.++| .+|...+.+ ...
T Consensus       337 ~s~avS~dg~~~A~v~~--------~~~l~vg~~~~~----~~~~~~~------~~Lt~PS~d~~g-~vWtv~~g~-~~~  396 (557)
T PRK13615        337 DAATLSADGRQAAVRNA--------SGVWSVGDGDRD----AVLLDTR------PGLVAPSLDAQG-YVWSTPASD-PRG  396 (557)
T ss_pred             ccceEcCCCceEEEEcC--------CceEEEecCCCc----ceeeccC------CccccCcCcCCC-CEEEEeCCC-ceE
Confidence            35789999999999842        124666654422    2333332      357899999998 566655522 344


Q ss_pred             EEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE--EeCCCCceeec-ccC----
Q 006979          327 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI--LDDFGHSLSLL-DIP----  399 (623)
Q Consensus       327 L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~--~d~~~~~~~~l-t~~----  399 (623)
                      +.+... +|+...+.        ..|..+ ....-+..|+||-++.+..+.+|..+|++  +-.+++..+.| +.+    
T Consensus       397 l~~~~~-~G~~~~v~--------v~~~~~-~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~  466 (557)
T PRK13615        397 LVAWGP-DGVGHPVA--------VSWTAT-GRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELL  466 (557)
T ss_pred             EEEecC-CCceEEee--------ccccCC-CeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcc
Confidence            444433 34443332        133322 12333334558888888776666555554  33344433344 322    


Q ss_pred             --CcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          400 --FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       400 --~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                        ...+..+ ..+++.+++++........++++.+.+..
T Consensus       467 ~~l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~~  505 (557)
T PRK13615        467 ASPGTPLDATWVDELDVATLTLAPDGERQVELHQVGGPS  505 (557)
T ss_pred             cCcCcceeeEEcCCCEEEEEeccCCCCceEEEEECCCcc
Confidence              1223334 45677787777555555678888887654

>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2

Probab=89.95  E-value=3.8  Score=43.45  Aligned_cols=120  Identities=22%  Similarity=0.126  Sum_probs=73.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEE-EECCCCCCCCchhHHHhhccC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFV-DVNYGGSTGYGREFRERLLGR  549 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~-~~d~rGs~~~g~~~~~~~~~~  549 (623)
                      .+.++. +++.|-        +-++|+.|+.-|.-.   ...|... -.+-..|.-.+ .-|.|=-||   +|.      
T Consensus       274 ~reEi~-yYFnPG--------D~KPPL~VYFSGyR~---aEGFEgy-~MMk~Lg~PfLL~~DpRleGG---aFY------  331 (511)
T TIGR03712       274 KRQEFI-YYFNPG--------DFKPPLNVYFSGYRP---AEGFEGY-FMMKRLGAPFLLIGDPRLEGG---AFY------  331 (511)
T ss_pred             CCCeeE-EecCCc--------CCCCCeEEeeccCcc---cCcchhH-HHHHhcCCCeEEeeccccccc---eee------
Confidence            455565 566664        467899999988622   2233211 12334555444 458885433   111      


Q ss_pred             CccchH-HHHHHHHHH-HHhCCCCCCCceEEEEcChHHHHHHHHhc--CCCceeEEEecccCCCHHHhhhh
Q 006979          550 WGIVDV-NDCCSCATF-LVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       550 ~g~~~~-~D~~~~~~~-l~~~~~~d~~rv~i~G~S~GG~~~~~~~~--~~~~f~a~v~~~g~~d~~~~~~~  616 (623)
                      .|..++ +-++..|+. |...| .+.+.+.+.|-|||.|-|++..+  .|   +|+|..=|++++-.++..
T Consensus       332 lGs~eyE~~I~~~I~~~L~~Lg-F~~~qLILSGlSMGTfgAlYYga~l~P---~AIiVgKPL~NLGtiA~n  398 (511)
T TIGR03712       332 LGSDEYEQGIINVIQEKLDYLG-FDHDQLILSGLSMGTFGALYYGAKLSP---HAIIVGKPLVNLGTIASR  398 (511)
T ss_pred             eCcHHHHHHHHHHHHHHHHHhC-CCHHHeeeccccccchhhhhhcccCCC---ceEEEcCcccchhhhhcc
Confidence            122222 234444443 33333 67899999999999999999883  34   788999999999877543

This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.86  E-value=13  Score=36.85  Aligned_cols=146  Identities=12%  Similarity=0.075  Sum_probs=88.1

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC--------------CCCceEEEEEEecCCCce
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM--------------PWDKAELWVGYISENGDV  286 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~--------------p~~~~~L~v~d~~~~~~~  286 (623)
                      ..+|.+.+-+..   +   +.+.|-++...|+-|  .|+|-.|-+...              -+.-+-|+.+|.+.+.  
T Consensus        20 ~~iY~felvG~~---P---~SGGDTYNAV~~vDd--~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~--   89 (339)
T PF09910_consen   20 EKIYRFELVGPP---P---TSGGDTYNAVEWVDD--FIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDS--   89 (339)
T ss_pred             eEEEEeeeccCC---C---CCCCccceeeeeecc--eEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCe--
Confidence            557777765543   2   456677777788754  477777755321              1123456777877652  


Q ss_pred             eeeEEEcC---CCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEE
Q 006979          287 YKRVCVAG---FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEII  362 (623)
Q Consensus       287 ~~~~~~~~---~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l  362 (623)
                       .+.+..+   .+..|.+.+++.-+.|=.. |++...+..-.--||.+|..+++.+.|.....--+          ..+ 
T Consensus        90 -VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~KG----------~~~-  157 (339)
T PF09910_consen   90 -VRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLKG----------TLV-  157 (339)
T ss_pred             -EEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcCc----------eEe-
Confidence             2222221   1236888899999998655 77776653334457888888999998875421111          111 


Q ss_pred             eecCCCCEEEEEEE--ECCeEEEEEEeCCCCce
Q 006979          363 QSHGEKNLIACSYR--QNGRSYLGILDDFGHSL  393 (623)
Q Consensus       363 ~~s~~~~~l~~~~~--~~g~~~L~~~d~~~~~~  393 (623)
                           .+..+|...  ..|.+.|..+|+.++++
T Consensus       158 -----~D~a~F~i~~~~~g~~~i~~~Dli~~~~  185 (339)
T PF09910_consen  158 -----HDYACFGINNFHKGVSGIHCLDLISGKW  185 (339)
T ss_pred             -----eeeEEEeccccccCCceEEEEEccCCeE
Confidence                 122333322  35677899999988888

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=89.68  E-value=21  Score=36.46  Aligned_cols=138  Identities=11%  Similarity=0.040  Sum_probs=76.7

Q ss_pred             CcEEEEeCCCCC--CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc-
Q 006979          165 QRLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-  241 (623)
Q Consensus       165 ~~l~~~d~~~g~--~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~-  241 (623)
                      ..||++...+|.  ...++++..    ...+.|..|||.-+.+++.+.-.        ..|-+.|...+.-. ...++. 
T Consensus       234 ~~I~lw~~~~g~W~vd~~Pf~gH----~~SVEDLqWSptE~~vfaScS~D--------gsIrIWDiRs~~~~-~~~~~kA  300 (440)
T KOG0302|consen  234 KGIHLWEPSTGSWKVDQRPFTGH----TKSVEDLQWSPTEDGVFASCSCD--------GSIRIWDIRSGPKK-AAVSTKA  300 (440)
T ss_pred             cceEeeeeccCceeecCcccccc----ccchhhhccCCccCceEEeeecC--------ceEEEEEecCCCcc-ceeEeec
Confidence            347777766551  123344432    34577999999998888877633        56777788776311 222222 


Q ss_pred             -CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEe
Q 006979          242 -GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTD  319 (623)
Q Consensus       242 -~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~  319 (623)
                       +.+ ++-..|+-+-..||+-.        +...+.+.|+..-..-.....+.-..    .-+..+.|+|... .+.++.
T Consensus       301 h~sD-VNVISWnr~~~lLasG~--------DdGt~~iwDLR~~~~~~pVA~fk~Hk----~pItsieW~p~e~s~iaasg  367 (440)
T KOG0302|consen  301 HNSD-VNVISWNRREPLLASGG--------DDGTLSIWDLRQFKSGQPVATFKYHK----APITSIEWHPHEDSVIAASG  367 (440)
T ss_pred             cCCc-eeeEEccCCcceeeecC--------CCceEEEEEhhhccCCCcceeEEecc----CCeeEEEeccccCceEEecc
Confidence             222 44567988776455432        23457777876431101122222222    4567899998655 444444


Q ss_pred             CCCCeeeEEE
Q 006979          320 RKNGFWNLHK  329 (623)
Q Consensus       320 ~~~g~~~L~~  329 (623)
                      . +.+-.||-
T Consensus       368 ~-D~QitiWD  376 (440)
T KOG0302|consen  368 E-DNQITIWD  376 (440)
T ss_pred             C-CCcEEEEE
Confidence            3 45555553

>PF03283 PAE: Pectinacetylesterase

Probab=89.65  E-value=0.25  Score=51.40  Aligned_cols=38  Identities=24%  Similarity=0.291  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      ..-+.+++++|.+++.-++++|.+.|.|+||+-++..+
T Consensus       137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~  174 (361)
T PF03283_consen  137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA  174 (361)
T ss_pred             HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence            45578999999999888999999999999999998765

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=89.59  E-value=8  Score=41.71  Aligned_cols=124  Identities=11%  Similarity=0.104  Sum_probs=60.8

Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW  325 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~  325 (623)
                      +.+..|.-+|.||+.+.-+..     ...+++..+.....  + .-+.-..    +.+....|.|---.+|++..  .  
T Consensus       524 i~~vtWHrkGDYlatV~~~~~-----~~~VliHQLSK~~s--Q-~PF~ksk----G~vq~v~FHPs~p~lfVaTq--~--  587 (733)
T KOG0650|consen  524 IRQVTWHRKGDYLATVMPDSG-----NKSVLIHQLSKRKS--Q-SPFRKSK----GLVQRVKFHPSKPYLFVATQ--R--  587 (733)
T ss_pred             cceeeeecCCceEEEeccCCC-----cceEEEEecccccc--c-CchhhcC----CceeEEEecCCCceEEEEec--c--
Confidence            455668888888887764432     44567777654421  0 0111111    44566778776445555443  2  


Q ss_pred             eEEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeeccc
Q 006979          326 NLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI  398 (623)
Q Consensus       326 ~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~  398 (623)
                      .+-.||+..+++ +.|.+      +..|.   +++.+.   |.|+.|++.+. ++.--.+-+|+.++-.+.|-.
T Consensus       588 ~vRiYdL~kqelvKkL~t------g~kwi---S~msih---p~GDnli~gs~-d~k~~WfDldlsskPyk~lr~  648 (733)
T KOG0650|consen  588 SVRIYDLSKQELVKKLLT------GSKWI---SSMSIH---PNGDNLILGSY-DKKMCWFDLDLSSKPYKTLRL  648 (733)
T ss_pred             ceEEEehhHHHHHHHHhc------CCeee---eeeeec---CCCCeEEEecC-CCeeEEEEcccCcchhHHhhh
Confidence            344566655331 22222      22343   233333   37777777653 333333334444444554443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=89.50  E-value=24  Score=41.57  Aligned_cols=60  Identities=12%  Similarity=0.059  Sum_probs=37.3

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEe
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW  263 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~  263 (623)
                      ....+.+--+++.|+++.+.         +.|.++|+.+..   ...+..-..-+...+||||+++++++..
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~---------G~iilvd~et~~---~eivg~vd~GI~aaswS~Dee~l~liT~  129 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITAL---------GDIILVDPETLE---LEIVGNVDNGISAASWSPDEELLALITG  129 (1265)
T ss_pred             ceEEEEEecccceEEEEecC---------CcEEEEcccccc---eeeeeeccCceEEEeecCCCcEEEEEeC
Confidence            34445566677777666543         457777777665   2222222223445789999999999974

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=89.46  E-value=23  Score=34.96  Aligned_cols=106  Identities=8%  Similarity=0.006  Sum_probs=61.8

Q ss_pred             eeecCCceEEE--eCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCC--EEEEEEeccCCCCC
Q 006979          142 AQEYGGGAFRI--FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDAL  217 (623)
Q Consensus       142 ~~~~g~~~~~~--s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~--~l~~v~~~~~~~~~  217 (623)
                      .|.|++.+..|  -+..++.+..-|..|-++|..+- +.....+-     +..+..-.|||-..  -|+++--+.     
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl-Q~a~~F~m-----e~~VYshamSp~a~sHcLiA~gtr~-----  167 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL-QEAVDFKM-----EGKVYSHAMSPMAMSHCLIAAGTRD-----  167 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccc-eeeEEeec-----CceeehhhcChhhhcceEEEEecCC-----
Confidence            45666655443  34456555555667889998764 22222222     12233446787432  333332222     


Q ss_pred             CceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEe
Q 006979          218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW  263 (623)
Q Consensus       218 ~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~  263 (623)
                         .++-+-|+.+|.-  ...|....+-+...+|||-..|+.+...
T Consensus       168 ---~~VrLCDi~SGs~--sH~LsGHr~~vlaV~Wsp~~e~vLatgs  208 (397)
T KOG4283|consen  168 ---VQVRLCDIASGSF--SHTLSGHRDGVLAVEWSPSSEWVLATGS  208 (397)
T ss_pred             ---CcEEEEeccCCcc--eeeeccccCceEEEEeccCceeEEEecC
Confidence               4566779988862  3445555566667899999999988763

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=89.38  E-value=1.3  Score=55.00  Aligned_cols=97  Identities=12%  Similarity=0.093  Sum_probs=57.8

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.|+++||.++.  ...|....+.+ ..++.|+.++.+|.+..-          -....++++.+.+...+..- ....+
T Consensus      1069 ~~l~~lh~~~g~--~~~~~~l~~~l-~~~~~v~~~~~~g~~~~~----------~~~~~l~~la~~~~~~i~~~-~~~~p 1134 (1296)
T PRK10252       1069 PTLFCFHPASGF--AWQFSVLSRYL-DPQWSIYGIQSPRPDGPM----------QTATSLDEVCEAHLATLLEQ-QPHGP 1134 (1296)
T ss_pred             CCeEEecCCCCc--hHHHHHHHHhc-CCCCcEEEEECCCCCCCC----------CCCCCHHHHHHHHHHHHHhh-CCCCC
Confidence            457888988433  33555566655 446999999998853210          01123344333322222211 11247


Q ss_pred             eEEEEcChHHHHHHHHh-c---CCCceeEEEeccc
Q 006979          576 LCITGGSAGGYTTLAAL-A---FRDTFKAGASLYG  606 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~---~~~~f~a~v~~~g  606 (623)
                      +.++|||+||.++..++ .   +++.+...+...+
T Consensus      1135 ~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252       1135 YHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred             EEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence            99999999999999887 3   4667776665543

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=89.31  E-value=26  Score=35.30  Aligned_cols=143  Identities=17%  Similarity=0.079  Sum_probs=80.8

Q ss_pred             eEEEeCCEEEEEeCCCCcEEEEeCCCC---CCCc---eecCCCCCCCCeeecceeeCCCCCEEEEEEe-ccCC----CCC
Q 006979          149 AFRIFGDTVIFSNYKDQRLYKHSIDSK---DSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVRE-DRRQ----DAL  217 (623)
Q Consensus       149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g---~~~~---~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~-~~~~----~~~  217 (623)
                      ..++.++.++|++..-+-|-.++..-.   --+|   ..|+++   ..+..+..++. ||+ ..||.. ...+    +-+
T Consensus       107 dia~~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~e---DRCHLNGlA~~-~g~-p~yVTa~~~sD~~~gWR~  181 (335)
T TIGR03032       107 DLALGAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPE---DRCHLNGMALD-DGE-PRYVTALSQSDVADGWRE  181 (335)
T ss_pred             heeecCCcEEEEECcceeEEEECCCCccccccCCccccccCcc---Cceeecceeee-CCe-EEEEEEeeccCCcccccc
Confidence            344545577888766666666665421   0012   233332   24667777663 454 444432 1111    111


Q ss_pred             CceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979          218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP  297 (623)
Q Consensus       218 ~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~  297 (623)
                      .....=+++|+.+++     .+..+-.+.-.|+|- ||+ |.+..+       ...+++.+|.+++    ....+...+ 
T Consensus       182 ~~~~gG~vidv~s~e-----vl~~GLsmPhSPRWh-dgr-Lwvlds-------gtGev~~vD~~~G----~~e~Va~vp-  242 (335)
T TIGR03032       182 GRRDGGCVIDIPSGE-----VVASGLSMPHSPRWY-QGK-LWLLNS-------GRGELGYVDPQAG----KFQPVAFLP-  242 (335)
T ss_pred             cccCCeEEEEeCCCC-----EEEcCccCCcCCcEe-CCe-EEEEEC-------CCCEEEEEcCCCC----cEEEEEECC-
Confidence            223345668998875     466777777789996 565 766642       2557999998766    233333334 


Q ss_pred             CccccCcCceeCCCCcEEEEEeC
Q 006979          298 TIVESPTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       298 ~~~~~~~~~~ws~DG~l~~~~~~  320 (623)
                         +......|.  |.+++++..
T Consensus       243 ---G~~rGL~f~--G~llvVgmS  260 (335)
T TIGR03032       243 ---GFTRGLAFA--GDFAFVGLS  260 (335)
T ss_pred             ---CCCccccee--CCEEEEEec
Confidence               456788887  777777643

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PHA03098 kelch-like protein; Provisional

Probab=89.26  E-value=28  Score=38.52  Aligned_cols=193  Identities=7%  Similarity=-0.083  Sum_probs=94.4

Q ss_pred             eeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979          220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (623)
Q Consensus       220 ~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~  299 (623)
                      ...++.+|+.+.++.....+........  ...-+| +|+.+......  .....++++|..++    ........... 
T Consensus       310 ~~~v~~yd~~~~~W~~~~~~~~~R~~~~--~~~~~~-~lyv~GG~~~~--~~~~~v~~yd~~~~----~W~~~~~lp~~-  379 (534)
T PHA03098        310 VNSVVSYDTKTKSWNKVPELIYPRKNPG--VTVFNN-RIYVIGGIYNS--ISLNTVESWKPGES----KWREEPPLIFP-  379 (534)
T ss_pred             eccEEEEeCCCCeeeECCCCCcccccce--EEEECC-EEEEEeCCCCC--EecceEEEEcCCCC----ceeeCCCcCcC-
Confidence            3578999998887422221211111111  122344 46666532211  01345777777654    23322221100 


Q ss_pred             cccCcCceeCCCCcEEEEEeCCCC---eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979          300 VESPTEPKWSSKGELFFVTDRKNG---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (623)
Q Consensus       300 ~~~~~~~~ws~DG~l~~~~~~~~g---~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~  376 (623)
                       .. ....-.-+|++|.......+   ...++++|+.+++++.+.+.......       .....     -++.+|+..-
T Consensus       380 -r~-~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-------~~~~~-----~~~~iyv~GG  445 (534)
T PHA03098        380 -RY-NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-------GCAIY-----HDGKIYVIGG  445 (534)
T ss_pred             -Cc-cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-------ceEEE-----ECCEEEEECC
Confidence             11 11122235666665432111   25688999999888877542211110       11222     2345555432


Q ss_pred             EC------CeEEEEEEeCCCCceeecccCCc-c-eEeeeecCCEEEEEEecCCC--CCeEEEEEcCCCcc
Q 006979          377 QN------GRSYLGILDDFGHSLSLLDIPFT-D-IDNITLGNDCLFVEGASGVE--PSSVAKVTLDDHKL  436 (623)
Q Consensus       377 ~~------g~~~L~~~d~~~~~~~~lt~~~~-~-v~~~~~~~~~~~~~~~s~~~--~~~ly~~~l~~~~~  436 (623)
                      ..      ....++++|+.+++|+.+..... . ...+..-++.+|+.+.....  ...++.+|+++.+.
T Consensus       446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            11      13459999999999988753211 1 11222236677777643221  35688888877763

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=89.24  E-value=10  Score=38.67  Aligned_cols=137  Identities=12%  Similarity=0.106  Sum_probs=79.1

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~  271 (623)
                      .+.+..|++.+ .++-+.+||         .|.+.|+.++..  ...++.+..+ .....+|+-+.|+--+.++      
T Consensus       262 ~Vs~V~w~d~~-v~yS~SwDH---------TIk~WDletg~~--~~~~~~~ksl-~~i~~~~~~~Ll~~gssdr------  322 (423)
T KOG0313|consen  262 PVSSVVWSDAT-VIYSVSWDH---------TIKVWDLETGGL--KSTLTTNKSL-NCISYSPLSKLLASGSSDR------  322 (423)
T ss_pred             ceeeEEEcCCC-ceEeecccc---------eEEEEEeecccc--eeeeecCcce-eEeecccccceeeecCCCC------
Confidence            35577788844 344445554         588999988762  3445554444 3467899888777555443      


Q ss_pred             ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccccccc
Q 006979          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL  351 (623)
Q Consensus       272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~  351 (623)
                        -|.++|...++.--....+.+..    ..+....|+|.....|++-..++...||-+....+.+-.|...+..+-...
T Consensus       323 --~irl~DPR~~~gs~v~~s~~gH~----nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd  396 (423)
T KOG0313|consen  323 --HIRLWDPRTGDGSVVSQSLIGHK----NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD  396 (423)
T ss_pred             --ceeecCCCCCCCceeEEeeecch----hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe
Confidence              27777876663312344556665    456788999998855555543566666644322233444444333333344


Q ss_pred             cc
Q 006979          352 WV  353 (623)
Q Consensus       352 w~  353 (623)
                      |.
T Consensus       397 W~  398 (423)
T KOG0313|consen  397 WN  398 (423)
T ss_pred             cc
Confidence            53

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=89.13  E-value=13  Score=36.76  Aligned_cols=99  Identities=14%  Similarity=0.022  Sum_probs=55.4

Q ss_pred             CeeecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC
Q 006979          190 LVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM  268 (623)
Q Consensus       190 ~~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~  268 (623)
                      .....+..||| ....+++.++|..       -++|-+.-. |... .+....-..-+-..+||-||.+++--.-|.   
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~t-------VR~wevq~~-g~~~-~ka~~~~~~PvL~v~WsddgskVf~g~~Dk---   94 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGT-------VRIWEVQNS-GQLV-PKAQQSHDGPVLDVCWSDDGSKVFSGGCDK---   94 (347)
T ss_pred             ccchheeEeccccCceEEecccCCc-------eEEEEEecC-Cccc-chhhhccCCCeEEEEEccCCceEEeeccCC---
Confidence            45677899999 4444546666642       445555443 3210 122222222233467999998776444332   


Q ss_pred             CCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       269 p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                           ++-++|+.++    ....+...+    ..+....|-+...
T Consensus        95 -----~~k~wDL~S~----Q~~~v~~Hd----~pvkt~~wv~~~~  126 (347)
T KOG0647|consen   95 -----QAKLWDLASG----QVSQVAAHD----APVKTCHWVPGMN  126 (347)
T ss_pred             -----ceEEEEccCC----Ceeeeeecc----cceeEEEEecCCC
Confidence                 3777799887    334444444    4556677876543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.09  E-value=24  Score=34.69  Aligned_cols=176  Identities=18%  Similarity=0.127  Sum_probs=90.9

Q ss_pred             eeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979          220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (623)
Q Consensus       220 ~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~  299 (623)
                      .+.|..+|+++|+......|. ..-|-.+...  -+.+|+-+.|.+       ...+++|.++-..   ...+.-..   
T Consensus        67 ~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~--~~d~l~qLTWk~-------~~~f~yd~~tl~~---~~~~~y~~---  130 (264)
T PF05096_consen   67 QSSLRKVDLETGKVLQSVPLP-PRYFGEGITI--LGDKLYQLTWKE-------GTGFVYDPNTLKK---IGTFPYPG---  130 (264)
T ss_dssp             EEEEEEEETTTSSEEEEEE-T-TT--EEEEEE--ETTEEEEEESSS-------SEEEEEETTTTEE---EEEEE-SS---
T ss_pred             cEEEEEEECCCCcEEEEEECC-ccccceeEEE--ECCEEEEEEecC-------CeEEEEccccceE---EEEEecCC---
Confidence            488999999999732222222 2223222232  356788888764       3478889876532   22221111   


Q ss_pred             cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe-EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (623)
Q Consensus       300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~  378 (623)
                          ....-..||+.++++|   |..+|+.+||.+-+ .+.+.-..  -+.|  ....+.+.+.    + +.+|..-  =
T Consensus       131 ----EGWGLt~dg~~Li~SD---GS~~L~~~dP~~f~~~~~i~V~~--~g~p--v~~LNELE~i----~-G~IyANV--W  192 (264)
T PF05096_consen  131 ----EGWGLTSDGKRLIMSD---GSSRLYFLDPETFKEVRTIQVTD--NGRP--VSNLNELEYI----N-GKIYANV--W  192 (264)
T ss_dssp             ----S--EEEECSSCEEEE----SSSEEEEE-TTT-SEEEEEE-EE--TTEE-----EEEEEEE----T-TEEEEEE--T
T ss_pred             ----cceEEEcCCCEEEEEC---CccceEEECCcccceEEEEEEEE--CCEE--CCCcEeEEEE----c-CEEEEEe--C
Confidence                1223347888565664   56789999998754 33332110  0111  1122345554    4 3444332  3


Q ss_pred             CeEEEEEEeCCCCceee-cc---------c-----C-CcceEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 006979          379 GRSYLGILDDFGHSLSL-LD---------I-----P-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (623)
Q Consensus       379 g~~~L~~~d~~~~~~~~-lt---------~-----~-~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~  432 (623)
                      -...|+++|+++|++.. ++         .     + .....++  +++.+++++++=   .-+.+|.+.+.
T Consensus       193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK---~Wp~lyeV~l~  261 (264)
T PF05096_consen  193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK---LWPKLYEVKLV  261 (264)
T ss_dssp             TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET---T-SEEEEEEEE
T ss_pred             CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC---CCCceEEEEEE
Confidence            35789999999998863 21         0     0 1124455  677888888763   33578877653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA03098 kelch-like protein; Provisional

Probab=89.06  E-value=41  Score=37.22  Aligned_cols=214  Identities=11%  Similarity=-0.032  Sum_probs=101.7

Q ss_pred             eCCEEEEEeCCC------CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          153 FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       153 s~d~l~f~~~~~------~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      .++.+++....+      ..++.+|+.++  .-..++..   +..|.......-+| .|+.+-....   ......++++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~---~~~R~~~~~~~~~~-~lyv~GG~~~---~~~~~~v~~y  363 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK--SWNKVPEL---IYPRKNPGVTVFNN-RIYVIGGIYN---SISLNTVESW  363 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCC--eeeECCCC---CcccccceEEEECC-EEEEEeCCCC---CEecceEEEE
Confidence            345566654321      25899998876  44555543   11222212222344 4544432211   1134668889


Q ss_pred             EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                      |+.++++.....+.....  ....-.-+| +|+.+.....+. .....++++|..++    .+......+ .  ......
T Consensus       364 d~~~~~W~~~~~lp~~r~--~~~~~~~~~-~iYv~GG~~~~~-~~~~~v~~yd~~t~----~W~~~~~~p-~--~r~~~~  432 (534)
T PHA03098        364 KPGESKWREEPPLIFPRY--NPCVVNVNN-LIYVIGGISKND-ELLKTVECFSLNTN----KWSKGSPLP-I--SHYGGC  432 (534)
T ss_pred             cCCCCceeeCCCcCcCCc--cceEEEECC-EEEEECCcCCCC-cccceEEEEeCCCC----eeeecCCCC-c--cccCce
Confidence            998877533222322211  111122344 566554311110 01245788887765    233322222 0  111112


Q ss_pred             eeCCCCcEEEEEeCCC-----CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC--
Q 006979          307 KWSSKGELFFVTDRKN-----GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG--  379 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~-----g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g--  379 (623)
                      ...-++++|.+.....     ....++++|+.+++++.+.+...    +.+.   .....+    + +.+|+..-..+  
T Consensus       433 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----~r~~---~~~~~~----~-~~iyv~GG~~~~~  500 (534)
T PHA03098        433 AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF----PRIN---ASLCIF----N-NKIYVVGGDKYEY  500 (534)
T ss_pred             EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc----cccc---ceEEEE----C-CEEEEEcCCcCCc
Confidence            2334666666543211     13458999999999887753311    1111   122222    3 44555432221  


Q ss_pred             -eEEEEEEeCCCCceeeccc
Q 006979          380 -RSYLGILDDFGHSLSLLDI  398 (623)
Q Consensus       380 -~~~L~~~d~~~~~~~~lt~  398 (623)
                       ...++.+|+++++|+.+..
T Consensus       501 ~~~~v~~yd~~~~~W~~~~~  520 (534)
T PHA03098        501 YINEIEVYDDKTNTWTLFCK  520 (534)
T ss_pred             ccceeEEEeCCCCEEEecCC
Confidence             3468889999888887754

>PHA02713 hypothetical protein; Provisional

Probab=89.01  E-value=42  Score=37.36  Aligned_cols=238  Identities=7%  Similarity=-0.066  Sum_probs=115.3

Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~  245 (623)
                      .++.+|+.++  .-..+++.+   ..+.......-+ +.|+.+-.....  ......++.+|+.++.+.....+......
T Consensus       273 ~v~~yd~~~~--~W~~l~~mp---~~r~~~~~a~l~-~~IYviGG~~~~--~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~  344 (557)
T PHA02713        273 CILVYNINTM--EYSVISTIP---NHIINYASAIVD-NEIIIAGGYNFN--NPSLNKVYKINIENKIHVELPPMIKNRCR  344 (557)
T ss_pred             CEEEEeCCCC--eEEECCCCC---ccccceEEEEEC-CEEEEEcCCCCC--CCccceEEEEECCCCeEeeCCCCcchhhc
Confidence            4788888765  455555431   112111122223 355554321101  11346789999988764222222211111


Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC---
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN---  322 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~---  322 (623)
                      ..  .-.-+| +||.+.......  ....+.++|..++    .+..++.....  .. ....-.-+|++|.+.....   
T Consensus       345 ~~--~~~~~g-~IYviGG~~~~~--~~~sve~Ydp~~~----~W~~~~~mp~~--r~-~~~~~~~~g~IYviGG~~~~~~  412 (557)
T PHA02713        345 FS--LAVIDD-TIYAIGGQNGTN--VERTIECYTMGDD----KWKMLPDMPIA--LS-SYGMCVLDQYIYIIGGRTEHID  412 (557)
T ss_pred             ee--EEEECC-EEEEECCcCCCC--CCceEEEEECCCC----eEEECCCCCcc--cc-cccEEEECCEEEEEeCCCcccc
Confidence            11  123355 477665332110  1234777787655    33333332200  11 1111234677777654311   


Q ss_pred             -----------------CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC----eE
Q 006979          323 -----------------GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG----RS  381 (623)
Q Consensus       323 -----------------g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g----~~  381 (623)
                                       ....+.++||.+++++.+.+.......       .....+     ++.||+..-.++    ..
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-------~~~~~~-----~~~IYv~GG~~~~~~~~~  480 (557)
T PHA02713        413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-------PGVVSH-----KDDIYVVCDIKDEKNVKT  480 (557)
T ss_pred             cccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-------CcEEEE-----CCEEEEEeCCCCCCccce
Confidence                             023588999999998877643211111       122333     345666543221    23


Q ss_pred             EEEEEeCCC-CceeecccCCcc--eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          382 YLGILDDFG-HSLSLLDIPFTD--IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       382 ~L~~~d~~~-~~~~~lt~~~~~--v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      .+.++|+++ .+|+.+..-...  ..++..-++++|+++.-.. ...+..+|+.+.+.
T Consensus       481 ~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~-~~~~e~yd~~~~~W  537 (557)
T PHA02713        481 CIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYES-YMLQDTFNVYTYEW  537 (557)
T ss_pred             eEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecc-eeehhhcCcccccc
Confidence            578999998 789876532211  1122445778888875322 12455666666664

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=89.01  E-value=6.7  Score=43.06  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCcccceecccCC--CcccceeeCCCCCEEEEEEecCC
Q 006979          223 IVAIALNGQNIQEPKVLVSGS--DFYAFPRMDPRGERMAWIEWHHP  266 (623)
Q Consensus       223 L~~idl~~g~~~~~~~l~~~~--~~~~~p~wSPDG~~la~~~~~~~  266 (623)
                      ++..+...++   ++++..+.  .-..+|.|||||++| |+...||
T Consensus       482 ~~~~~~~~g~---~~rf~~~P~gaE~tG~~fspDg~tl-FvniQHP  523 (524)
T PF05787_consen  482 VWAYDPDTGE---LKRFLVGPNGAEITGPCFSPDGRTL-FVNIQHP  523 (524)
T ss_pred             eeeccccccc---eeeeccCCCCcccccceECCCCCEE-EEEEeCC
Confidence            4445556666   55554332  224679999999986 4555665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.97  E-value=41  Score=37.15  Aligned_cols=84  Identities=14%  Similarity=0.041  Sum_probs=47.2

Q ss_pred             cceeeCCCCCEEEEEEeccCC-------CCCCceeEEEEEEcCCCCcccceecccCC----Cccccee---eCCCCC--E
Q 006979          194 ADGIFDPRFNRYVTVREDRRQ-------DALNSTTEIVAIALNGQNIQEPKVLVSGS----DFYAFPR---MDPRGE--R  257 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~~~~-------~~~~~~~~L~~idl~~g~~~~~~~l~~~~----~~~~~p~---wSPDG~--~  257 (623)
                      ..++++|+.+.|++-..+...       .++.....|+.+|+++|+....-|.+...    +....|.   .-.||+  .
T Consensus       237 ~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~  316 (527)
T TIGR03075       237 GTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRK  316 (527)
T ss_pred             CceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEE
Confidence            345788877766655533111       11223568999999999854434443332    2223343   335887  3


Q ss_pred             EEEEEecCCCCCCCceEEEEEEecCCC
Q 006979          258 MAWIEWHHPNMPWDKAELWVGYISENG  284 (623)
Q Consensus       258 la~~~~~~~~~p~~~~~L~v~d~~~~~  284 (623)
                      ++... .+      ...+|++|..++.
T Consensus       317 ~v~~~-~K------~G~~~vlDr~tG~  336 (527)
T TIGR03075       317 LLAHA-DR------NGFFYVLDRTNGK  336 (527)
T ss_pred             EEEEe-CC------CceEEEEECCCCc
Confidence            44333 33      3458899887764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=88.94  E-value=2  Score=43.96  Aligned_cols=88  Identities=13%  Similarity=0.086  Sum_probs=54.8

Q ss_pred             CCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc
Q 006979          162 YKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (623)
Q Consensus       162 ~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~  240 (623)
                      ..+..|-++|+.+.  ..++.-.. .-.....++-..|||||.+++.-..+         +.+|+.++.+++.+  .++.
T Consensus       360 sRDdtl~viDlRt~--eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d---------gsv~iW~v~tgKlE--~~l~  426 (459)
T KOG0288|consen  360 SRDDTLKVIDLRTK--EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD---------GSVYIWSVFTGKLE--KVLS  426 (459)
T ss_pred             cCCCceeeeecccc--cEEEEeeccccccccccceeEECCCCceeeeccCC---------CcEEEEEccCceEE--EEec
Confidence            35666888888765  44433221 00011225567899999998876544         67999999999842  2332


Q ss_pred             cC--CCcccceeeCCCCCEEEEEE
Q 006979          241 SG--SDFYAFPRMDPRGERMAWIE  262 (623)
Q Consensus       241 ~~--~~~~~~p~wSPDG~~la~~~  262 (623)
                      ..  ..-....+|+|-|+.|+-..
T Consensus       427 ~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  427 LSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             cCCCCcceEEEEEcCCCchhhccc
Confidence            21  11245578999999887553

>cd00741 Lipase Lipase

Probab=88.81  E-value=0.9  Score=40.93  Aligned_cols=35  Identities=20%  Similarity=0.107  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       556 ~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      ..+...++....+  ....+|.++|||+||.++..++
T Consensus        12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a   46 (153)
T cd00741          12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAG   46 (153)
T ss_pred             HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHH
Confidence            3444444444432  2357999999999999998877

Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=88.71  E-value=28  Score=34.84  Aligned_cols=156  Identities=10%  Similarity=0.085  Sum_probs=88.0

Q ss_pred             CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCC-----CCCCcee
Q 006979          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-----DALNSTT  221 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~-----~~~~~~~  221 (623)
                      +.+..++.++|+++  ..+.||++.....   ++++-.-         +-.-.|+|   ++....+..     -|..-.+
T Consensus        97 I~~V~l~r~riVvv--l~~~I~VytF~~n---~k~l~~~---------et~~NPkG---lC~~~~~~~k~~LafPg~k~G  159 (346)
T KOG2111|consen   97 IKAVKLRRDRIVVV--LENKIYVYTFPDN---PKLLHVI---------ETRSNPKG---LCSLCPTSNKSLLAFPGFKTG  159 (346)
T ss_pred             eeeEEEcCCeEEEE--ecCeEEEEEcCCC---hhheeee---------ecccCCCc---eEeecCCCCceEEEcCCCccc
Confidence            55677788888887  5677999987643   4444332         11112444   121111100     0122347


Q ss_pred             EEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc
Q 006979          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~  301 (623)
                      +|-++|+...+..++..+.....-.+..+.+-||..||-.+.       .++-|.+.|..+++.+.+  +-.|.+ .  .
T Consensus       160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-------kGTLIRIFdt~~g~~l~E--~RRG~d-~--A  227 (346)
T KOG2111|consen  160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-------KGTLIRIFDTEDGTLLQE--LRRGVD-R--A  227 (346)
T ss_pred             eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-------CcEEEEEEEcCCCcEeee--eecCCc-h--h
Confidence            788889876541111223222223455779999998886652       245578888887753222  223333 2  4


Q ss_pred             cCcCceeCCCCcEEEEEeCCCCeeeEEEEec
Q 006979          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (623)
Q Consensus       302 ~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~  332 (623)
                      .+...++|||++++.++.+ .|.-+|+.+..
T Consensus       228 ~iy~iaFSp~~s~LavsSd-KgTlHiF~l~~  257 (346)
T KOG2111|consen  228 DIYCIAFSPNSSWLAVSSD-KGTLHIFSLRD  257 (346)
T ss_pred             eEEEEEeCCCccEEEEEcC-CCeEEEEEeec
Confidence            5678899999994444444 48878876543

>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3

Probab=88.55  E-value=3  Score=41.40  Aligned_cols=123  Identities=9%  Similarity=0.025  Sum_probs=67.2

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc---CcCC-HHhHHHHcCceEEEEECCCCCCCCchhHHHhhcc
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG  548 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~---~~~~-~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~  548 (623)
                      ..++..++-..        .++.|.||..|.-......   .-|+ ...+.+. +.|.++-+|.+|...-...    +..
T Consensus         9 G~v~V~v~G~~--------~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~-~~f~i~Hi~aPGqe~ga~~----~p~   75 (283)
T PF03096_consen    9 GSVHVTVQGDP--------KGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEIL-QNFCIYHIDAPGQEEGAAT----LPE   75 (283)
T ss_dssp             EEEEEEEESS----------TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHH-TTSEEEEEE-TTTSTT---------T
T ss_pred             eEEEEEEEecC--------CCCCceEEEeccccccchHHHHHHhcchhHHHHh-hceEEEEEeCCCCCCCccc----ccc
Confidence            35777777443        3467999999976322211   1122 2344444 4699999999996653222    233


Q ss_pred             CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          549 RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       549 ~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      .+....++++.+.+..+.++=.+  +.+..+|--+|+++-...+ .||+++-+.|.+.+...-
T Consensus        76 ~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~  136 (283)
T PF03096_consen   76 GYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTA  136 (283)
T ss_dssp             T-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S-
T ss_pred             cccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCC
Confidence            33333455555555554443123  6789999999999999888 999999999999886543

Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=88.44  E-value=15  Score=40.03  Aligned_cols=217  Identities=15%  Similarity=0.140  Sum_probs=112.6

Q ss_pred             HhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCC------------CCCCcccCCCC---Cccc------ee
Q 006979           84 VSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKA------------GDEPSDITPKE---YAVR------TT  141 (623)
Q Consensus        84 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~------------gg~~~~l~p~~---~~~r------~~  141 (623)
                      ..+...++...++.| +..+|-+-+|   +|...||-+...+            ++...--+|..   ...+      ..
T Consensus       140 ~~GH~~SvkS~cf~~~n~~vF~tGgR---Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~t  216 (720)
T KOG0321|consen  140 NLGHTGSVKSECFMPTNPAVFCTGGR---DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNT  216 (720)
T ss_pred             ecccccccchhhhccCCCcceeeccC---CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCc
Confidence            344456677888888 8888887766   5888888654321            10000001111   0001      11


Q ss_pred             eeecCCceEEEeCC-EEEEEeCCCCcEEEEeCCCCC----CCceecCCCC--CCCCeeecceeeCCCCCEEEEEEeccCC
Q 006979          142 AQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKD----SSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQ  214 (623)
Q Consensus       142 ~~~~g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~----~~~~~Lt~~~--~~~~~~~~d~~~sPdG~~l~~v~~~~~~  214 (623)
                      +.++ +....+.++ .|+=....|+.|-++|+...-    .++.......  .....-+..+..+.-|.+|++.+-|   
T Consensus       217 i~ss-vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD---  292 (720)
T KOG0321|consen  217 IFSS-VTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD---  292 (720)
T ss_pred             eeee-eEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC---
Confidence            1111 111222233 333333347779999987420    1122211110  0112234466778888999887764   


Q ss_pred             CCCCceeEEEEEEcCCCCcccceecccC---CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE
Q 006979          215 DALNSTTEIVAIALNGQNIQEPKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC  291 (623)
Q Consensus       215 ~~~~~~~~L~~idl~~g~~~~~~~l~~~---~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~  291 (623)
                            +.||.+++.+-... +..+..+   ..|+.--..||||.+|+=.++++      ...+|.++-...    ...+
T Consensus       293 ------~sIy~ynm~s~s~s-P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~------~ayiw~vs~~e~----~~~~  355 (720)
T KOG0321|consen  293 ------NSIYFYNMRSLSIS-PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDE------QAYIWVVSSPEA----PPAL  355 (720)
T ss_pred             ------CcEEEEeccccCcC-chhhccCcccceeeeeeecCCCCceEeccCCCc------ceeeeeecCccC----Chhh
Confidence                  67999998775411 2222333   23555567999999988766664      334555543222    3445


Q ss_pred             EcCCCCCccccCcCceeCCC--CcEEEEEeCCCCeeeEEEE
Q 006979          292 VAGFDPTIVESPTEPKWSSK--GELFFVTDRKNGFWNLHKW  330 (623)
Q Consensus       292 ~~~~~~~~~~~~~~~~ws~D--G~l~~~~~~~~g~~~L~~~  330 (623)
                      +.+..    ..+..++|.|-  +.++-.+++  -...||++
T Consensus       356 l~Ght----~eVt~V~w~pS~~t~v~TcSdD--~~~kiW~l  390 (720)
T KOG0321|consen  356 LLGHT----REVTTVRWLPSATTPVATCSDD--FRVKIWRL  390 (720)
T ss_pred             hhCcc----eEEEEEeeccccCCCceeeccC--cceEEEec
Confidence            55655    55667778764  445544443  33455554

>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]

Probab=88.36  E-value=4.1  Score=43.54  Aligned_cols=139  Identities=17%  Similarity=0.233  Sum_probs=80.6

Q ss_pred             EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC----------------HHhHHHHcCceE
Q 006979          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN----------------LSIQYWTSRGWA  526 (623)
Q Consensus       463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~----------------~~~~~~a~~G~~  526 (623)
                      -+.+... .+..+..|+++..+.      .+.-|+||++.|||+=....++.                ...-.|.+. -.
T Consensus        48 Yv~v~~~-~~~~LFYwf~eS~~~------P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~-aN  119 (454)
T KOG1282|consen   48 YVTVNES-EGRQLFYWFFESENN------PETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKE-AN  119 (454)
T ss_pred             eEECCCC-CCceEEEEEEEccCC------CCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCcccccc-cc
Confidence            3444444 678888888876541      34568999999998532211110                011113332 24


Q ss_pred             EEEECCCCCCCCchhHHHhhcc-CCc-cchHHHHHH-HHHHHHhCCCCCCCceEEEEcChHHHHHHHHh----cCC----
Q 006979          527 FVDVNYGGSTGYGREFRERLLG-RWG-IVDVNDCCS-CATFLVGSGKADEKRLCITGGSAGGYTTLAAL----AFR----  595 (623)
Q Consensus       527 v~~~d~rGs~~~g~~~~~~~~~-~~g-~~~~~D~~~-~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~----~~~----  595 (623)
                      ++-+|-+=+.||  +|.+.... ..+ ....+|... ..+|+.+.+..-.+.+.|.|-||+|..+-.++    .+.    
T Consensus       120 iLfLd~PvGvGF--SYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~  197 (454)
T KOG1282|consen  120 ILFLDQPVGVGF--SYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCC  197 (454)
T ss_pred             EEEEecCCcCCc--cccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhcccccc
Confidence            555665533333  23221111 111 123455554 45688888877778999999999997665544    121    


Q ss_pred             ---CceeEEEecccCCCHH
Q 006979          596 ---DTFKAGASLYGVSIPV  611 (623)
Q Consensus       596 ---~~f~a~v~~~g~~d~~  611 (623)
                         =-+|+.+...|++|..
T Consensus       198 ~~~iNLkG~~IGNg~td~~  216 (454)
T KOG1282|consen  198 KPNINLKGYAIGNGLTDPE  216 (454)
T ss_pred             CCcccceEEEecCcccCcc
Confidence               1478999999998864

>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]

Probab=88.30  E-value=4.1  Score=37.15  Aligned_cols=58  Identities=12%  Similarity=0.066  Sum_probs=44.8

Q ss_pred             cCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       548 ~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .+|-....+|-++.++..+..-   ++.+.+++||.|+-+++..+ .....++++..++|..
T Consensus        36 ~~w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd   94 (181)
T COG3545          36 DDWEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPD   94 (181)
T ss_pred             CCCCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCC
Confidence            3466667888888887665542   44599999999999999988 4455789999888874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=87.99  E-value=14  Score=39.34  Aligned_cols=57  Identities=18%  Similarity=0.207  Sum_probs=31.0

Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEE
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT  318 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~  318 (623)
                      ...-+|+|||.-|.-..  +.      ..|-+..-.+-    .+..+....    ..+.-++|.|+.. ++|..
T Consensus       107 ~~~gRW~~dGtgLlt~G--ED------G~iKiWSrsGM----LRStl~Q~~----~~v~c~~W~p~S~~vl~c~  164 (737)
T KOG1524|consen  107 ISSGRWSPDGAGLLTAG--ED------GVIKIWSRSGM----LRSTVVQNE----ESIRCARWAPNSNSIVFCQ  164 (737)
T ss_pred             hhhcccCCCCceeeeec--CC------ceEEEEeccch----HHHHHhhcC----ceeEEEEECCCCCceEEec
Confidence            34468999999886443  21      12333332221    122233333    4566788988877 66554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.78  E-value=24  Score=37.16  Aligned_cols=206  Identities=9%  Similarity=0.001  Sum_probs=112.7

Q ss_pred             CccccCCCCCCCcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCc-ccCCCCCccceeee
Q 006979           66 DKITAPYGSWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPS-DITPKEYAVRTTAQ  143 (623)
Q Consensus        66 ~~~~~~~g~w~s~~t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~-~l~p~~~~~r~~~~  143 (623)
                      ...+.-|+ -++..-++.+.+.........++| ++.++-..   +|+.-..+|-...+   ..+ .+....--+|    
T Consensus        89 sG~V~vfD-~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~---sDd~v~k~~d~s~a---~v~~~l~~htDYVR----  157 (487)
T KOG0310|consen   89 SGHVKVFD-MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG---SDDKVVKYWDLSTA---YVQAELSGHTDYVR----  157 (487)
T ss_pred             cCcEEEec-cccHHHHHHHhhccCceeEEEecccCCeEEEec---CCCceEEEEEcCCc---EEEEEecCCcceeE----
Confidence            34444454 244334555666555667888998 66665433   22344444433322   211 1221110111    


Q ss_pred             ecCCceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          144 EYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       144 ~~g~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                         -+++.+..+.++++..-|+.|-++|..+.  ..+.++-.   .+....+..+-|.|..|+-...          +.+
T Consensus       158 ---~g~~~~~~~hivvtGsYDg~vrl~DtR~~--~~~v~eln---hg~pVe~vl~lpsgs~iasAgG----------n~v  219 (487)
T KOG0310|consen  158 ---CGDISPANDHIVVTGSYDGKVRLWDTRSL--TSRVVELN---HGCPVESVLALPSGSLIASAGG----------NSV  219 (487)
T ss_pred             ---eeccccCCCeEEEecCCCceEEEEEeccC--CceeEEec---CCCceeeEEEcCCCCEEEEcCC----------CeE
Confidence               23444455689999888898989988764  23333321   1355667788898887665322          568


Q ss_pred             EEEEcCCCCcccceeccc---CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          224 VAIALNGQNIQEPKVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~---~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      -++|+-+|.    +.++.   ...-+...++.-|+++|+-.+-|..        +-++|+..-      .++.+..  +.
T Consensus       220 kVWDl~~G~----qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~--------VKVfd~t~~------Kvv~s~~--~~  279 (487)
T KOG0310|consen  220 KVWDLTTGG----QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH--------VKVFDTTNY------KVVHSWK--YP  279 (487)
T ss_pred             EEEEecCCc----eehhhhhcccceEEEEEeecCCceEeecccccc--------eEEEEccce------EEEEeee--cc
Confidence            888998653    22322   2334566778889998876655542        556664322      2222211  01


Q ss_pred             ccCcCceeCCCCcEEEEEeC
Q 006979          301 ESPTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       301 ~~~~~~~ws~DG~l~~~~~~  320 (623)
                      ..+-+..-+||++.+++...
T Consensus       280 ~pvLsiavs~dd~t~viGms  299 (487)
T KOG0310|consen  280 GPVLSIAVSPDDQTVVIGMS  299 (487)
T ss_pred             cceeeEEecCCCceEEEecc
Confidence            34567778888884444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.21  E-value=21  Score=38.40  Aligned_cols=139  Identities=14%  Similarity=0.113  Sum_probs=58.8

Q ss_pred             CCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EE
Q 006979           79 LTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TV  157 (623)
Q Consensus        79 ~t~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l  157 (623)
                      ++.+.+......+..+..+|.++..-+.    ++|.+.|+...               +.|....+. +..++|... ..
T Consensus        23 l~~k~lg~~~~~p~~ls~npngr~v~V~----g~geY~iyt~~---------------~~r~k~~G~-g~~~vw~~~n~y   82 (443)
T PF04053_consen   23 LSVKELGSCEIYPQSLSHNPNGRFVLVC----GDGEYEIYTAL---------------AWRNKAFGS-GLSFVWSSRNRY   82 (443)
T ss_dssp             ---EEEEE-SS--SEEEE-TTSSEEEEE----ETTEEEEEETT---------------TTEEEEEEE--SEEEE-TSSEE
T ss_pred             EEeccCCCCCcCCeeEEECCCCCEEEEE----cCCEEEEEEcc---------------CCcccccCc-eeEEEEecCccE
Confidence            3444444455567888899833333332    24777777511               112222222 334555544 43


Q ss_pred             EEEeCCCCcEEE-EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          158 IFSNYKDQRLYK-HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       158 ~f~~~~~~~l~~-~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      ++.+ ..+.|-+ -+.+..  ..+.++..     .. .+--|.  |.. ++++.+         ..|..+|..+++.  +
T Consensus        83 Av~~-~~~~I~I~kn~~~~--~~k~i~~~-----~~-~~~If~--G~L-L~~~~~---------~~i~~yDw~~~~~--i  139 (443)
T PF04053_consen   83 AVLE-SSSTIKIYKNFKNE--VVKSIKLP-----FS-VEKIFG--GNL-LGVKSS---------DFICFYDWETGKL--I  139 (443)
T ss_dssp             EEE--TTS-EEEEETTEE---TT-----S-----S--EEEEE---SSS-EEEEET---------TEEEEE-TTT--E--E
T ss_pred             EEEE-CCCeEEEEEcCccc--cceEEcCC-----cc-cceEEc--CcE-EEEECC---------CCEEEEEhhHcce--e
Confidence            3333 3444555 344322  22344432     11 111232  664 444542         3599999998863  4


Q ss_pred             eecccCCCcccceeeCCCCCEEEEEE
Q 006979          237 KVLVSGSDFYAFPRMDPRGERMAWIE  262 (623)
Q Consensus       237 ~~l~~~~~~~~~p~wSPDG~~la~~~  262 (623)
                      +.+.-.+  +....||+||++++.+.
T Consensus       140 ~~i~v~~--vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen  140 RRIDVSA--VKYVIWSDDGELVALVT  163 (443)
T ss_dssp             EEESS-E---EEEEE-TTSSEEEEE-
T ss_pred             eEEecCC--CcEEEEECCCCEEEEEe
Confidence            4444222  23457999999999986

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.11  E-value=29  Score=33.26  Aligned_cols=145  Identities=9%  Similarity=0.033  Sum_probs=78.3

Q ss_pred             EEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce
Q 006979          158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK  237 (623)
Q Consensus       158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~  237 (623)
                      +.+...|..++++|+.+| ...+++...    ....+..+|..+.. +++.-.        ....+-++|-.+...++++
T Consensus        74 f~s~GgDk~v~vwDV~TG-kv~Rr~rgH----~aqVNtV~fNeesS-Vv~Sgs--------fD~s~r~wDCRS~s~ePiQ  139 (307)
T KOG0316|consen   74 FASCGGDKAVQVWDVNTG-KVDRRFRGH----LAQVNTVRFNEESS-VVASGS--------FDSSVRLWDCRSRSFEPIQ  139 (307)
T ss_pred             cccCCCCceEEEEEcccC-eeeeecccc----cceeeEEEecCcce-EEEecc--------ccceeEEEEcccCCCCccc
Confidence            334445567999999998 445555543    45667777776664 444322        1155777788776544444


Q ss_pred             ecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEE
Q 006979          238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV  317 (623)
Q Consensus       238 ~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~  317 (623)
                      .|.+..+-+.....+  +..|.--+.        ...+..+|+..+.      +..+.- .  ..+....+++||+...+
T Consensus       140 ildea~D~V~Si~v~--~heIvaGS~--------DGtvRtydiR~G~------l~sDy~-g--~pit~vs~s~d~nc~La  200 (307)
T KOG0316|consen  140 ILDEAKDGVSSIDVA--EHEIVAGSV--------DGTVRTYDIRKGT------LSSDYF-G--HPITSVSFSKDGNCSLA  200 (307)
T ss_pred             hhhhhcCceeEEEec--ccEEEeecc--------CCcEEEEEeecce------eehhhc-C--CcceeEEecCCCCEEEE
Confidence            444444444433332  222322221        2236677776551      111111 0  34567889999994444


Q ss_pred             EeCCCCeeeEEEEecCCCeEE
Q 006979          318 TDRKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       318 ~~~~~g~~~L~~~d~~~~~~~  338 (623)
                      +.- ++  .|..+|-++|++-
T Consensus       201 ~~l-~s--tlrLlDk~tGklL  218 (307)
T KOG0316|consen  201 SSL-DS--TLRLLDKETGKLL  218 (307)
T ss_pred             eec-cc--eeeecccchhHHH
Confidence            433 23  4556777777643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=87.00  E-value=29  Score=38.19  Aligned_cols=56  Identities=14%  Similarity=0.169  Sum_probs=44.7

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEE
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMA  259 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la  259 (623)
                      ...|.++-|||..|+....          +.|+++|...|..  .+.|-...|.+.-.+||.||++.|
T Consensus        14 ci~d~afkPDGsqL~lAAg----------~rlliyD~ndG~l--lqtLKgHKDtVycVAys~dGkrFA   69 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG----------SRLLVYDTSDGTL--LQPLKGHKDTVYCVAYAKDGKRFA   69 (1081)
T ss_pred             chheeEECCCCceEEEecC----------CEEEEEeCCCccc--ccccccccceEEEEEEccCCceec
Confidence            4678999999999988654          6799999988763  556666667777789999999765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.84  E-value=26  Score=33.73  Aligned_cols=193  Identities=11%  Similarity=0.076  Sum_probs=0.0

Q ss_pred             CCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC---EEEEEeCCCCc--EEEEeCCCCCCCceecCCCC
Q 006979          112 AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD---TVIFSNYKDQR--LYKHSIDSKDSSPLPITPDY  186 (623)
Q Consensus       112 ~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d---~l~f~~~~~~~--l~~~d~~~g~~~~~~Lt~~~  186 (623)
                      +|+..||+...+   ...+...-.      .|+-..-+.++.+.   .+++....||.  |..++-+++....+..... 
T Consensus        79 DgkVIiWke~~g---~w~k~~e~~------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH-  148 (299)
T KOG1332|consen   79 DGKVIIWKEENG---RWTKAYEHA------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH-  148 (299)
T ss_pred             CceEEEEecCCC---chhhhhhhh------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc-


Q ss_pred             CCCCeeecceeeCCC---C-----------CEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeC
Q 006979          187 GEPLVSYADGIFDPR---F-----------NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMD  252 (623)
Q Consensus       187 ~~~~~~~~d~~~sPd---G-----------~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wS  252 (623)
                         ..-.+..+|.|-   |           ++++----|         +.+-+.+.+.+.....+.|....+++...+|.
T Consensus       149 ---~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD---------n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwa  216 (299)
T KOG1332|consen  149 ---EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD---------NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWA  216 (299)
T ss_pred             ---ccccceeeecCcCCCccccccCcccccceeeccCCc---------cceeeeecCCcchhhhhhhhhcchhhhhhhhc


Q ss_pred             CCC----CEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979          253 PRG----ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH  328 (623)
Q Consensus       253 PDG----~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~  328 (623)
                      |.-    .+||-.+.|.      ..-||..+.+.+.-  ...++...+    ..+....||.-|.++-++.. ++.-.||
T Consensus       217 P~~gl~~s~iAS~SqDg------~viIwt~~~e~e~w--k~tll~~f~----~~~w~vSWS~sGn~LaVs~G-dNkvtlw  283 (299)
T KOG1332|consen  217 PSVGLPKSTIASCSQDG------TVIIWTKDEEYEPW--KKTLLEEFP----DVVWRVSWSLSGNILAVSGG-DNKVTLW  283 (299)
T ss_pred             cccCCCceeeEEecCCC------cEEEEEecCccCcc--cccccccCC----cceEEEEEeccccEEEEecC-CcEEEEE


Q ss_pred             EEecCCCeEEEE
Q 006979          329 KWIESNNEVLAI  340 (623)
Q Consensus       329 ~~d~~~~~~~~l  340 (623)
                      +-+. .|+.+++
T Consensus       284 ke~~-~Gkw~~v  294 (299)
T KOG1332|consen  284 KENV-DGKWEEV  294 (299)
T ss_pred             EeCC-CCcEEEc

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=86.75  E-value=11  Score=41.57  Aligned_cols=115  Identities=12%  Similarity=0.133  Sum_probs=67.3

Q ss_pred             eeeCCCCCEEEEEEecCCC------------CCCCceEEEEEEecCCCc----eeeeEEEcCCC-------------CCc
Q 006979          249 PRMDPRGERMAWIEWHHPN------------MPWDKAELWVGYISENGD----VYKRVCVAGFD-------------PTI  299 (623)
Q Consensus       249 p~wSPDG~~la~~~~~~~~------------~p~~~~~L~v~d~~~~~~----~~~~~~~~~~~-------------~~~  299 (623)
                      ..+.|....||+...+...            ..+....||.++.+.+..    .....++.+.+             ..+
T Consensus       355 i~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~  434 (524)
T PF05787_consen  355 ITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNG  434 (524)
T ss_pred             eeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCCC
Confidence            3478887788887655441            123456788887665411    11111222211             123


Q ss_pred             cccCcCceeCCCCcEEEEEeCCCCeee--------------------EEEEecCCCeEEEEe--ecccccccccccccCc
Q 006979          300 VESPTEPKWSSKGELFFVTDRKNGFWN--------------------LHKWIESNNEVLAIY--SLDAEFSRPLWVFGIN  357 (623)
Q Consensus       300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~--------------------L~~~d~~~~~~~~l~--~~~~~~~~~~w~~~~~  357 (623)
                      ..++....++++|.|+++.|.......                    ++..++..++.+++.  +..++++++.|++   
T Consensus       435 f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp---  511 (524)
T PF05787_consen  435 FASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSP---  511 (524)
T ss_pred             cCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECC---
Confidence            346678899999988777765222111                    334456667766665  5567888887765   


Q ss_pred             ceeEEeecCCCCEEEEEE
Q 006979          358 SYEIIQSHGEKNLIACSY  375 (623)
Q Consensus       358 ~~~~l~~s~~~~~l~~~~  375 (623)
                               |++.|++..
T Consensus       512 ---------Dg~tlFvni  520 (524)
T PF05787_consen  512 ---------DGRTLFVNI  520 (524)
T ss_pred             ---------CCCEEEEEE
Confidence                     888877654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=86.71  E-value=56  Score=36.18  Aligned_cols=94  Identities=11%  Similarity=0.030  Sum_probs=51.0

Q ss_pred             cCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEee-ccc-----ccccccccccCcceeEEeecCCCCEEEEE
Q 006979          302 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDA-----EFSRPLWVFGINSYEIIQSHGEKNLIACS  374 (623)
Q Consensus       302 ~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~-----~~~~~~w~~~~~~~~~l~~s~~~~~l~~~  374 (623)
                      .+....|.|++. |+-.+.+  ...-+|+-|-.+|-+..... ++.     .|-+..|++            ++ .+++.
T Consensus       269 WV~sv~W~p~~~~LLSASaD--ksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~------------n~-~~ii~  333 (764)
T KOG1063|consen  269 WVYSVWWHPEGLDLLSASAD--KSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP------------NS-NVIIA  333 (764)
T ss_pred             ceEEEEEccchhhheecccC--cceEEEecCCccceEEEEEEeecccccccceeeEEEcC------------CC-CEEEE
Confidence            345678999995 4433332  44556666555665554432 111     122223332            44 46667


Q ss_pred             EEECCeEEEEEEeCCCCceeecccCCcc---eEee--eecCC
Q 006979          375 YRQNGRSYLGILDDFGHSLSLLDIPFTD---IDNI--TLGND  411 (623)
Q Consensus       375 ~~~~g~~~L~~~d~~~~~~~~lt~~~~~---v~~~--~~~~~  411 (623)
                      ..+.|..|++. +.+...+.+....-+.   |..+  ++.|.
T Consensus       334 ~g~~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V~dv~W~psGe  374 (764)
T KOG1063|consen  334 HGRTGGFHLWK-TKDKTFWTQEPVISGHVDGVKDVDWDPSGE  374 (764)
T ss_pred             ecccCcEEEEe-ccCccceeeccccccccccceeeeecCCCC
Confidence            77888899998 5555666654433333   4444  44455

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.44  E-value=6.5  Score=45.48  Aligned_cols=159  Identities=9%  Similarity=0.011  Sum_probs=87.8

Q ss_pred             CceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEE-EeccCCCCCCceeEE
Q 006979          147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTV-REDRRQDALNSTTEI  223 (623)
Q Consensus       147 ~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v-~~~~~~~~~~~~~~L  223 (623)
                      +.+++|...  .|+.+...+++..++|++.. .....+...  ....+.....|+||+..-+.+ .++...      ..|
T Consensus       164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~--~~~~~~S~l~WhP~~aTql~~As~dd~~------Pvi  234 (1049)
T KOG0307|consen  164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDT--PGRMHCSVLAWHPDHATQLLVASGDDSA------PVI  234 (1049)
T ss_pred             ceEeccchhhhHHhhccCCCCCceeccccCC-CcccccccC--CCccceeeeeeCCCCceeeeeecCCCCC------cee
Confidence            455566543  67777777778889999754 234445543  223557789999988644444 333322      334


Q ss_pred             EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      -..|+.--.. .++.+.....-.....|++.+.+++..+..       ..++++.+.++++.+   --+....    ..+
T Consensus       235 qlWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lllSsgk-------D~~ii~wN~~tgEvl---~~~p~~~----nW~  299 (1049)
T KOG0307|consen  235 QLWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLLSSGK-------DNRIICWNPNTGEVL---GELPAQG----NWC  299 (1049)
T ss_pred             EeecccccCC-chhhhcccccceeeeccCCCCchhhhcccC-------CCCeeEecCCCceEe---eecCCCC----cce
Confidence            4556543221 134443333334557899988777666533       234777777765221   1122112    245


Q ss_pred             cCceeCCCCc-EEEEEeCCCCeeeEEEE
Q 006979          304 TEPKWSSKGE-LFFVTDRKNGFWNLHKW  330 (623)
Q Consensus       304 ~~~~ws~DG~-l~~~~~~~~g~~~L~~~  330 (623)
                      ..+.|.|..- ++-++.. +|.-.||.+
T Consensus       300 fdv~w~pr~P~~~A~asf-dgkI~I~sl  326 (1049)
T KOG0307|consen  300 FDVQWCPRNPSVMAAASF-DGKISIYSL  326 (1049)
T ss_pred             eeeeecCCCcchhhhhee-ccceeeeee
Confidence            6788988654 4434433 566666644

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=86.44  E-value=20  Score=38.78  Aligned_cols=112  Identities=10%  Similarity=0.036  Sum_probs=60.8

Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc----cCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (623)
Q Consensus       196 ~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~----~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~  271 (623)
                      ..||-...+.+++.|..-....++.-+.++++...++   ++.+.    .-......-++||+.++++.--.|.      
T Consensus       211 ~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k---lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg------  281 (545)
T PF11768_consen  211 VEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK---LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG------  281 (545)
T ss_pred             EEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc---eeEEEEEEEecCCcceEEecCcccceEEEEecCC------
Confidence            4455533334444443211112233445555655554   33221    1112234467999999998776554      


Q ss_pred             ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH  328 (623)
Q Consensus       272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~  328 (623)
                        .|.++|...+-    .. .....    ..+...+|.|||.++++.+. +|.-+++
T Consensus       282 --SiiLyD~~~~~----t~-~~ka~----~~P~~iaWHp~gai~~V~s~-qGelQ~F  326 (545)
T PF11768_consen  282 --SIILYDTTRGV----TL-LAKAE----FIPTLIAWHPDGAIFVVGSE-QGELQCF  326 (545)
T ss_pred             --eEEEEEcCCCe----ee-eeeec----ccceEEEEcCCCcEEEEEcC-CceEEEE
Confidence              38888876652    11 11222    44568899999987767665 5655554

>PLN02606 palmitoyl-protein thioesterase

Probab=86.04  E-value=6.6  Score=39.36  Aligned_cols=102  Identities=14%  Similarity=0.090  Sum_probs=55.5

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~  571 (623)
                      .+.|+|| .||-......+.+....+++.+ .|.-+..+- -|.+ .-..|       ++. ..+-+..+-+.|.+.+..
T Consensus        25 ~~~PvVi-wHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~-~~~s~-------~~~-~~~Qv~~vce~l~~~~~L   93 (306)
T PLN02606         25 LSVPFVL-FHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNG-VQDSL-------FMP-LRQQASIACEKIKQMKEL   93 (306)
T ss_pred             CCCCEEE-ECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCC-ccccc-------ccC-HHHHHHHHHHHHhcchhh
Confidence            3567666 7998555555566667777752 365444443 2211 10011       111 112223333334333323


Q ss_pred             CCCceEEEEcChHHHHHHHHh-cCCC--ceeEEEeccc
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-AFRD--TFKAGASLYG  606 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g  606 (623)
                       .+-+-++|+|.||.+.=.++ +.|+  .++-.|++.|
T Consensus        94 -~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlgg  130 (306)
T PLN02606         94 -SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGG  130 (306)
T ss_pred             -cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecC
Confidence             24689999999999998888 6655  3666666544

>KOG3975 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.03  E-value=11  Score=36.54  Aligned_cols=51  Identities=20%  Similarity=0.373  Sum_probs=31.3

Q ss_pred             HHHHH-HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC--ceeEEEeccc
Q 006979          555 VNDCC-SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD--TFKAGASLYG  606 (623)
Q Consensus       555 ~~D~~-~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g  606 (623)
                      .+|.+ --++++.+. ..-..||.|+|||-|.||++.++ ..-.  .+..+++..|
T Consensus        91 L~~QV~HKlaFik~~-~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP  145 (301)
T KOG3975|consen   91 LQDQVDHKLAFIKEY-VPKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP  145 (301)
T ss_pred             hhhHHHHHHHHHHHh-CCCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence            34443 334555543 22346999999999999999998 3322  2344455555

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=85.84  E-value=27  Score=35.18  Aligned_cols=205  Identities=12%  Similarity=0.039  Sum_probs=89.4

Q ss_pred             ceEEcCCCcEEEEeecC-CC------CCceEEEEcCCCCCCCC-cccCCCCCccceeeeecCCceEEEeC-------CEE
Q 006979           93 GTAVDGHGRLIWLESRP-TE------AGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIFG-------DTV  157 (623)
Q Consensus        93 ~~~~~~~~~~~~l~~~~-~e------~g~~~l~~~~~~~gg~~-~~l~p~~~~~r~~~~~~g~~~~~~s~-------d~l  157 (623)
                      .+.+++.+++|.++... ..      .+...|+.++..++... +-.+|+..-..    ......+.++.       ..+
T Consensus         5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~----~s~lndl~VD~~~~~~~~~~a   80 (287)
T PF03022_consen    5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPP----DSFLNDLVVDVRDGNCDDGFA   80 (287)
T ss_dssp             EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-T----CGGEEEEEEECTTTTS-SEEE
T ss_pred             EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHccc----ccccceEEEEccCCCCcceEE
Confidence            34555567788887332 11      23457887776643211 22234331110    00011233332       245


Q ss_pred             EEEeCCCCcEEEEeCCCCCCCceecCCCC---CCCCee---------ecc----eee---CCCCCEEEEEEeccCCCCCC
Q 006979          158 IFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVS---------YAD----GIF---DPRFNRYVTVREDRRQDALN  218 (623)
Q Consensus       158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~---~~~~~~---------~~d----~~~---sPdG~~l~~v~~~~~~~~~~  218 (623)
                      |+++.....|.++|+.++  ...++....   ++....         ..+    .+.   +|||++|+|..-..      
T Consensus        81 YItD~~~~glIV~dl~~~--~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss------  152 (287)
T PF03022_consen   81 YITDSGGPGLIVYDLATG--KSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS------  152 (287)
T ss_dssp             EEEETTTCEEEEEETTTT--EEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-------
T ss_pred             EEeCCCcCcEEEEEccCC--cEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC------
Confidence            566655567999999876  444443320   110011         111    123   44777776643221      


Q ss_pred             ceeEEEEEEcC---CCCc-------ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee
Q 006979          219 STTEIVAIALN---GQNI-------QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK  288 (623)
Q Consensus       219 ~~~~L~~idl~---~g~~-------~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~  288 (623)
                        ..+|.++.+   ....       ..++.+..-.....+...+++|. |+|....       ...|+..+.++.=....
T Consensus       153 --~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~-------~~aI~~w~~~~~~~~~~  222 (287)
T PF03022_consen  153 --RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVE-------QNAIGCWDPDGPYTPEN  222 (287)
T ss_dssp             --SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECC-------CTEEEEEETTTSB-GCC
T ss_pred             --CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCC-------CCeEEEEeCCCCcCccc
Confidence              458888742   1110       01122211111233456788775 7777644       33588888765211012


Q ss_pred             eEEEcCCCCCccccCcCceeCC--CCcEEEEEeC
Q 006979          289 RVCVAGFDPTIVESPTEPKWSS--KGELFFVTDR  320 (623)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~ws~--DG~l~~~~~~  320 (623)
                      ..++...+ .....+..+.+.+  ||.|++++++
T Consensus       223 ~~~l~~d~-~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  223 FEILAQDP-RTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEEEEE-C-C-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             hheeEEcC-ceeeccceeeeccccCceEEEEECc
Confidence            22333222 1123556777777  7778887765

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=85.82  E-value=41  Score=33.69  Aligned_cols=151  Identities=15%  Similarity=0.119  Sum_probs=77.0

Q ss_pred             CCceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCC--EEEEEEeccCCCCCCceeEE
Q 006979          146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       146 g~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~--~l~~v~~~~~~~~~~~~~~L  223 (623)
                      .+.+.+++. .-+.+...|.+|+++|+... .+...|...    ....+...|+|+-.  +|+-..+|         +.|
T Consensus        45 sitavAVs~-~~~aSGssDetI~IYDm~k~-~qlg~ll~H----agsitaL~F~~~~S~shLlS~sdD---------G~i  109 (362)
T KOG0294|consen   45 SITALAVSG-PYVASGSSDETIHIYDMRKR-KQLGILLSH----AGSITALKFYPPLSKSHLLSGSDD---------GHI  109 (362)
T ss_pred             ceeEEEecc-eeEeccCCCCcEEEEeccch-hhhcceecc----ccceEEEEecCCcchhheeeecCC---------CcE
Confidence            355566553 23334445667999999753 122222221    34566666776653  44443443         446


Q ss_pred             EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      .+.+...  +.-+..+-....-++..+..|.|| ||..-..+       ..|...++-.+..  ...+-..      ...
T Consensus       110 ~iw~~~~--W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D-------~~lr~WNLV~Gr~--a~v~~L~------~~a  171 (362)
T KOG0294|consen  110 IIWRVGS--WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGD-------QVLRTWNLVRGRV--AFVLNLK------NKA  171 (362)
T ss_pred             EEEEcCC--eEEeeeecccccccceeEecCCCc-eEEEEcCC-------ceeeeehhhcCcc--ceeeccC------Ccc
Confidence            6666533  211233332333367788999998 66544222       1256666655521  1111111      223


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEEe
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d  331 (623)
                      ..+.|+|.|..|++.-+  ..-.+|..+
T Consensus       172 t~v~w~~~Gd~F~v~~~--~~i~i~q~d  197 (362)
T KOG0294|consen  172 TLVSWSPQGDHFVVSGR--NKIDIYQLD  197 (362)
T ss_pred             eeeEEcCCCCEEEEEec--cEEEEEecc
Confidence            45899999984444443  233455443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=85.76  E-value=45  Score=34.21  Aligned_cols=138  Identities=13%  Similarity=0.062  Sum_probs=69.4

Q ss_pred             ccCceEEcCCCcEEEEeecC-CCCCceEEEEcCCCCCCCC-ccc-CCCCCccc----eeeee-cCCceEEEeCC--EEEE
Q 006979           90 RLGGTAVDGHGRLIWLESRP-TEAGRGVLVKEPAKAGDEP-SDI-TPKEYAVR----TTAQE-YGGGAFRIFGD--TVIF  159 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~-~e~g~~~l~~~~~~~gg~~-~~l-~p~~~~~r----~~~~~-~g~~~~~~s~d--~l~f  159 (623)
                      ..+++++.+++.+||..-.. .......|++++..  |.. +.+ +|..+...    ..... .|..+.++++|  .++.
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~  163 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA  163 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence            45678883377777765111 00012678888876  333 333 45544211    11112 34456667666  3544


Q ss_pred             EeCCC---------------CcEEEEeCCCCCCCce----ecCCCC-CCCCeeecceeeCCCCCEEEEEEeccCCCCCCc
Q 006979          160 SNYKD---------------QRLYKHSIDSKDSSPL----PITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNS  219 (623)
Q Consensus       160 ~~~~~---------------~~l~~~d~~~g~~~~~----~Lt~~~-~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~  219 (623)
                      ..+..               -+|+.+|..+......    ++.... ........+..+-||++.|+.-|.....  ...
T Consensus       164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~--~~~  241 (326)
T PF13449_consen  164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPG--TGN  241 (326)
T ss_pred             EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCC--ccc
Confidence            43221               2477777765201111    222100 0024566788889999866554442221  224


Q ss_pred             eeEEEEEEcCCC
Q 006979          220 TTEIVAIALNGQ  231 (623)
Q Consensus       220 ~~~L~~idl~~g  231 (623)
                      ...||.+++...
T Consensus       242 ~~ri~~v~l~~a  253 (326)
T PF13449_consen  242 YKRIYRVDLSDA  253 (326)
T ss_pred             eEEEEEEEcccc
Confidence            578999998653

>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length

Probab=85.40  E-value=5.4  Score=33.24  Aligned_cols=16  Identities=19%  Similarity=0.410  Sum_probs=13.4

Q ss_pred             eeCCCCCEEEEEEecC
Q 006979          250 RMDPRGERMAWIEWHH  265 (623)
Q Consensus       250 ~wSPDG~~la~~~~~~  265 (623)
                      .|||||++|.|+-.|+
T Consensus        74 vfSpDG~~lSFTYNDh   89 (122)
T PF12566_consen   74 VFSPDGSWLSFTYNDH   89 (122)
T ss_pred             EECCCCCEEEEEecch
Confidence            4999999999997554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.04  E-value=37  Score=32.56  Aligned_cols=194  Identities=10%  Similarity=0.054  Sum_probs=102.7

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      ....++.-||++.+..-.+         ..+-+.++-.|..  ++.......-+-....|-|..+++-...|        
T Consensus        20 V~avryN~dGnY~ltcGsd---------rtvrLWNp~rg~l--iktYsghG~EVlD~~~s~Dnskf~s~GgD--------   80 (307)
T KOG0316|consen   20 VRAVRYNVDGNYCLTCGSD---------RTVRLWNPLRGAL--IKTYSGHGHEVLDAALSSDNSKFASCGGD--------   80 (307)
T ss_pred             eEEEEEccCCCEEEEcCCC---------ceEEeecccccce--eeeecCCCceeeeccccccccccccCCCC--------
Confidence            4456678899987654332         3355556655542  22222222122334567788777644323        


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccc
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW  352 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w  352 (623)
                      ..+++.|++++   ...+.+.+..    ..+..++|..+..+++.... +-.-++|-..-.+-++.++..+..+      
T Consensus        81 k~v~vwDV~TG---kv~Rr~rgH~----aqVNtV~fNeesSVv~Sgsf-D~s~r~wDCRS~s~ePiQildea~D------  146 (307)
T KOG0316|consen   81 KAVQVWDVNTG---KVDRRFRGHL----AQVNTVRFNEESSVVASGSF-DSSVRLWDCRSRSFEPIQILDEAKD------  146 (307)
T ss_pred             ceEEEEEcccC---eeeeeccccc----ceeeEEEecCcceEEEeccc-cceeEEEEcccCCCCccchhhhhcC------
Confidence            34888899988   3555666665    56778889877766554433 2334555333333344444433111      


Q ss_pred             cccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCC--cceEee--eecCCEEEEEEecCCCCCeEEE
Q 006979          353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF--TDIDNI--TLGNDCLFVEGASGVEPSSVAK  428 (623)
Q Consensus       353 ~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~--~~v~~~--~~~~~~~~~~~~s~~~~~~ly~  428 (623)
                        +..+..+      .++.++....+|..+.|-+.  .|...   ..+  ..+..+  +.+++..+...-+    ..|-+
T Consensus       147 --~V~Si~v------~~heIvaGS~DGtvRtydiR--~G~l~---sDy~g~pit~vs~s~d~nc~La~~l~----stlrL  209 (307)
T KOG0316|consen  147 --GVSSIDV------AEHEIVAGSVDGTVRTYDIR--KGTLS---SDYFGHPITSVSFSKDGNCSLASSLD----STLRL  209 (307)
T ss_pred             --ceeEEEe------cccEEEeeccCCcEEEEEee--cceee---hhhcCCcceeEEecCCCCEEEEeecc----ceeee
Confidence              1112222      34566777778887776553  34332   221  123333  5666655443322    34667


Q ss_pred             EEcCCCcc
Q 006979          429 VTLDDHKL  436 (623)
Q Consensus       429 ~~l~~~~~  436 (623)
                      +|-++|++
T Consensus       210 lDk~tGkl  217 (307)
T KOG0316|consen  210 LDKETGKL  217 (307)
T ss_pred             cccchhHH
Confidence            78777764

>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]

Probab=84.98  E-value=4.1  Score=41.52  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=68.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcC---------ceEEEEECCCCCCCCchh
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR---------GWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~---------G~~v~~~d~rGs~~~g~~  541 (623)
                      .|.+||-.-..|...  +. .....|+ +++||.|++-.  .|.-.+..++.-         -|-|++|-.+|-   |-+
T Consensus       132 eGL~iHFlhvk~p~~--k~-~k~v~Pl-Ll~HGwPGsv~--EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGy---gwS  202 (469)
T KOG2565|consen  132 EGLKIHFLHVKPPQK--KK-KKKVKPL-LLLHGWPGSVR--EFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGY---GWS  202 (469)
T ss_pred             cceeEEEEEecCCcc--cc-CCcccce-EEecCCCchHH--HHHhhhhhhcCccccCCccceeEEEeccCCCCc---ccC
Confidence            577888555555432  11 1223455 45899986543  444445555543         488999999984   332


Q ss_pred             HHHhhccCCccchHHHHHHHHHHH-HhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEE
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFL-VGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAG  601 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l-~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~  601 (623)
                      -   .....|... ..+..+++-| ...|   -++..|.|+-+|.-++..++ -+|+.+.+.
T Consensus       203 d---~~sk~GFn~-~a~ArvmrkLMlRLg---~nkffiqGgDwGSiI~snlasLyPenV~Gl  257 (469)
T KOG2565|consen  203 D---APSKTGFNA-AATARVMRKLMLRLG---YNKFFIQGGDWGSIIGSNLASLYPENVLGL  257 (469)
T ss_pred             c---CCccCCccH-HHHHHHHHHHHHHhC---cceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence            1   112233332 2333344433 4444   47999999999999999998 788866543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=84.92  E-value=4.5  Score=41.03  Aligned_cols=134  Identities=13%  Similarity=0.095  Sum_probs=74.7

Q ss_pred             CCCCCcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEE
Q 006979           73 GSWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFR  151 (623)
Q Consensus        73 g~w~s~~t~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~  151 (623)
                      |.|+--  ..-++....+++.++||| ...+|..-+-   +|...||-.+.+  .+..-++-+.       |...+-.+.
T Consensus       244 g~W~vd--~~Pf~gH~~SVEDLqWSptE~~vfaScS~---DgsIrIWDiRs~--~~~~~~~~kA-------h~sDVNVIS  309 (440)
T KOG0302|consen  244 GSWKVD--QRPFTGHTKSVEDLQWSPTEDGVFASCSC---DGSIRIWDIRSG--PKKAAVSTKA-------HNSDVNVIS  309 (440)
T ss_pred             Cceeec--CccccccccchhhhccCCccCceEEeeec---CceEEEEEecCC--CccceeEeec-------cCCceeeEE
Confidence            888521  223444567889999999 8999988766   488888865543  1222222121       222234455


Q ss_pred             EeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          152 IFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       152 ~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      |+.+ .++.+...+|.+-++|+..- +..+++..- .--........|+|....++.+....        ++|.+.|+.-
T Consensus       310 Wnr~~~lLasG~DdGt~~iwDLR~~-~~~~pVA~f-k~Hk~pItsieW~p~e~s~iaasg~D--------~QitiWDlsv  379 (440)
T KOG0302|consen  310 WNRREPLLASGGDDGTLSIWDLRQF-KSGQPVATF-KYHKAPITSIEWHPHEDSVIAASGED--------NQITIWDLSV  379 (440)
T ss_pred             ccCCcceeeecCCCceEEEEEhhhc-cCCCcceeE-EeccCCeeEEEeccccCceEEeccCC--------CcEEEEEeec
Confidence            5554 45556666788888888642 011111110 00012245677999777776665432        4566666643

>PLN02454 triacylglycerol lipase

Probab=84.89  E-value=1.5  Score=45.99  Aligned_cols=38  Identities=18%  Similarity=0.119  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      .+++.+.++.++++..-.+-+|.++|||+||.+++.++
T Consensus       209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA  246 (414)
T PLN02454        209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAA  246 (414)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHH
Confidence            46777888888776322223599999999999999887

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=84.13  E-value=8.4  Score=43.26  Aligned_cols=102  Identities=10%  Similarity=0.025  Sum_probs=62.7

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE-cC-CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA-LN-GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id-l~-~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~  271 (623)
                      .-.++||.++.++....+         ++|.+.. .. .+.....+.+--..+-+....||+||.+|+=-.        .
T Consensus       209 t~~~~spn~~~~Aa~d~d---------GrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG--------~  271 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSD---------GRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG--------R  271 (792)
T ss_pred             eeEEeccccceEEEeccC---------CcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc--------c
Confidence            346799999877764433         3344443 22 122122444544556677789999999886322        1


Q ss_pred             ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~  320 (623)
                      .+.|.+..++++    .++.++...    ..+....||||+.++.+...
T Consensus       272 E~VLv~Wq~~T~----~kqfLPRLg----s~I~~i~vS~ds~~~sl~~~  312 (792)
T KOG1963|consen  272 EGVLVLWQLETG----KKQFLPRLG----SPILHIVVSPDSDLYSLVLE  312 (792)
T ss_pred             ceEEEEEeecCC----CcccccccC----CeeEEEEEcCCCCeEEEEec
Confidence            445666677666    355666554    45678899999996655544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=84.11  E-value=60  Score=34.17  Aligned_cols=151  Identities=10%  Similarity=0.071  Sum_probs=82.1

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNI  233 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~--g~~  233 (623)
                      .++|.+..+ .+-++|+.+++.+-..+.-.    ........+.|-..+++.+....        ..+.++|+..  ++ 
T Consensus       293 ~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh----~kKI~sv~~NP~~p~~laT~s~D--------~T~kIWD~R~l~~K-  358 (498)
T KOG4328|consen  293 SVLFGDNVG-NFNVIDLRTDGSEYENLRLH----KKKITSVALNPVCPWFLATASLD--------QTAKIWDLRQLRGK-  358 (498)
T ss_pred             cEEEeeccc-ceEEEEeecCCccchhhhhh----hcccceeecCCCCchheeecccC--------cceeeeehhhhcCC-
Confidence            455554433 56677777652223333332    23667788899888877765533        3355567654  22 


Q ss_pred             cccee-c--ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec---CCCceeeeEEEcCCC-C-CccccCcC
Q 006979          234 QEPKV-L--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS---ENGDVYKRVCVAGFD-P-TIVESPTE  305 (623)
Q Consensus       234 ~~~~~-l--~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~---~~~~~~~~~~~~~~~-~-~~~~~~~~  305 (623)
                        ..+ |  ......++...|||+|-.|+-...|        .+|.++|..   ..-.  ....+.... . .| .....
T Consensus       359 --~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D--------~~IRv~dss~~sa~~~--p~~~I~Hn~~t~Rw-lT~fK  425 (498)
T KOG4328|consen  359 --ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD--------NEIRVFDSSCISAKDE--PLGTIPHNNRTGRW-LTPFK  425 (498)
T ss_pred             --CCcceecccccceeeeeEEcCCCCceEeeccC--------CceEEeecccccccCC--ccceeeccCccccc-ccchh
Confidence              111 2  1222345667799999887766533        347777763   1111  111111111 0 11 34457


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                      ..|.||-.++++.+.   -..|-.+|..+++
T Consensus       426 A~W~P~~~li~vg~~---~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  426 AAWDPDYNLIVVGRY---PRPIDVFDGNGGQ  453 (498)
T ss_pred             heeCCCccEEEEecc---CcceeEEcCCCCE
Confidence            799998766666554   2247788877766

>PLN02633 palmitoyl protein thioesterase family protein

Probab=84.03  E-value=7.8  Score=38.94  Aligned_cols=103  Identities=16%  Similarity=0.081  Sum_probs=58.0

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcC-ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~-G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      ..+.|+|| -||-+.....+......+.+.+. |.-+..+..-.+  .        ...|-....+-+..+-+.|.+.+.
T Consensus        23 ~~~~P~Vi-wHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~ig~~--~--------~~s~~~~~~~Qve~vce~l~~~~~   91 (314)
T PLN02633         23 SVSVPFIM-LHGIGTQCSDATNANFTQLLTNLSGSPGFCLEIGNG--V--------GDSWLMPLTQQAEIACEKVKQMKE   91 (314)
T ss_pred             cCCCCeEE-ecCCCcccCCchHHHHHHHHHhCCCCceEEEEECCC--c--------cccceeCHHHHHHHHHHHHhhchh
Confidence            34567766 69876666666666666666553 566656554221  1        111111111222233333333322


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCC--ceeEEEeccc
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRD--TFKAGASLYG  606 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g  606 (623)
                      . .+-+-++|+|.||.+.=.++ +.++  .++-.|++.|
T Consensus        92 l-~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg  129 (314)
T PLN02633         92 L-SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG  129 (314)
T ss_pred             h-hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence            2 24689999999999998888 6665  4666666644

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=83.86  E-value=6.9  Score=43.07  Aligned_cols=54  Identities=13%  Similarity=0.131  Sum_probs=30.7

Q ss_pred             ccCcCceeCCCCc-EEEEEeCC-----CCeeeEEEEecCCCeEEEEeecccccccccccc
Q 006979          301 ESPTEPKWSSKGE-LFFVTDRK-----NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF  354 (623)
Q Consensus       301 ~~~~~~~ws~DG~-l~~~~~~~-----~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~  354 (623)
                      ..+.+..|+++|. |.+.....     .+...+..+.+-+.-...+.....++++..|.-
T Consensus       259 m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg  318 (1189)
T KOG2041|consen  259 MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEG  318 (1189)
T ss_pred             cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcC
Confidence            4567889999999 54443321     122345555554444444544455666777754

>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=83.84  E-value=7.8  Score=37.84  Aligned_cols=98  Identities=17%  Similarity=0.062  Sum_probs=58.1

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcC-ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHH-HHHHHHhCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS-CATFLVGSGKAD  572 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~-G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~-~~~~l~~~~~~d  572 (623)
                      .|+|| .||-........+....|++.+. |..|.+.+..-+  ....|..         ...+... +-+.+...+.. 
T Consensus        24 ~P~ii-~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig~g--~~~s~l~---------pl~~Qv~~~ce~v~~m~~l-   90 (296)
T KOG2541|consen   24 VPVIV-WHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIGDG--IKDSSLM---------PLWEQVDVACEKVKQMPEL-   90 (296)
T ss_pred             CCEEE-EeccCcccccchHHHHHHHHHhCCCCeeEEEEecCC--cchhhhc---------cHHHHHHHHHHHHhcchhc-
Confidence            56665 79986666655666778888775 888888886431  1122221         1223332 33333322222 


Q ss_pred             CCceEEEEcChHHHHHHHHh-cCC-CceeEEEecc
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AFR-DTFKAGASLY  605 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~~-~~f~a~v~~~  605 (623)
                      ++-+-|+|.|.||.++=+++ ..+ ..++-.|+..
T Consensus        91 sqGynivg~SQGglv~Raliq~cd~ppV~n~ISL~  125 (296)
T KOG2541|consen   91 SQGYNIVGYSQGGLVARALIQFCDNPPVKNFISLG  125 (296)
T ss_pred             cCceEEEEEccccHHHHHHHHhCCCCCcceeEecc
Confidence            57889999999999998888 322 2344445443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.51  E-value=35  Score=35.11  Aligned_cols=128  Identities=13%  Similarity=0.135  Sum_probs=58.2

Q ss_pred             EEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCC---CCCCCCeeecceeeCCC---CCEEEEEEeccC-CCCCCcee
Q 006979          150 FRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITP---DYGEPLVSYADGIFDPR---FNRYVTVREDRR-QDALNSTT  221 (623)
Q Consensus       150 ~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~---~~~~~~~~~~d~~~sPd---G~~l~~v~~~~~-~~~~~~~~  221 (623)
                      .++.+| .+++ .+..|+|++++.++.  ....+..   .......-..+.+++|+   ..+| |+..... ........
T Consensus         7 ~a~~pdG~l~v-~e~~G~i~~~~~~g~--~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~l-Yv~~t~~~~~~~~~~~   82 (331)
T PF07995_consen    7 MAFLPDGRLLV-AERSGRIWVVDKDGS--LKTPVADLPEVFADGERGLLGIAFHPDFASNGYL-YVYYTNADEDGGDNDN   82 (331)
T ss_dssp             EEEETTSCEEE-EETTTEEEEEETTTE--ECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EE-EEEEEEE-TSSSSEEE
T ss_pred             EEEeCCCcEEE-EeCCceEEEEeCCCc--CcceecccccccccccCCcccceeccccCCCCEE-EEEEEcccCCCCCcce
Confidence            444555 4544 445888999984432  1122211   10011223345677774   2233 3322211 11112446


Q ss_pred             EEEEEEcCCC--Ccccceecc----c---CCCcccceeeCCCCCEEEEEEecCCC------CCCCceEEEEEEecC
Q 006979          222 EIVAIALNGQ--NIQEPKVLV----S---GSDFYAFPRMDPRGERMAWIEWHHPN------MPWDKAELWVGYISE  282 (623)
Q Consensus       222 ~L~~idl~~g--~~~~~~~l~----~---~~~~~~~p~wSPDG~~la~~~~~~~~------~p~~~~~L~v~d~~~  282 (623)
                      .|+++.++.+  .....+.|.    .   ....-....|.||| +|++..-+..+      .......|..++.++
T Consensus        83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG  157 (331)
T PF07995_consen   83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG  157 (331)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred             eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccC
Confidence            7888877655  211122232    1   11223457799999 68776644332      111245677777654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=83.48  E-value=73  Score=34.71  Aligned_cols=88  Identities=19%  Similarity=0.058  Sum_probs=38.6

Q ss_pred             EEEEEeC----CCCcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          156 TVIFSNY----KDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       156 ~l~f~~~----~~~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      .++|...    .....|.+|.++   ..+ .++..    ..+...+..-++|+.++.. .          ..++.+|+.|
T Consensus       115 gl~~~~~~~~~~~~~~~~iD~~G---~Vrw~~~~~----~~~~~~~~~l~nG~ll~~~-~----------~~~~e~D~~G  176 (477)
T PF05935_consen  115 GLYFVNGNDWDSSSYTYLIDNNG---DVRWYLPLD----SGSDNSFKQLPNGNLLIGS-G----------NRLYEIDLLG  176 (477)
T ss_dssp             -EEEEEETT--BEEEEEEEETTS----EEEEE-GG----GT--SSEEE-TTS-EEEEE-B----------TEEEEE-TT-
T ss_pred             cEEEEeCCCCCCCceEEEECCCc---cEEEEEccC----ccccceeeEcCCCCEEEec-C----------CceEEEcCCC
Confidence            5666654    223478888764   333 22221    1111125567899866543 3          5688899876


Q ss_pred             CCcccceecccCC-CcccceeeCCCCCEEEEEE
Q 006979          231 QNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIE  262 (623)
Q Consensus       231 g~~~~~~~l~~~~-~~~~~p~wSPDG~~la~~~  262 (623)
                      ... ....+..+. .+.-....-|+|..|+...
T Consensus       177 ~v~-~~~~l~~~~~~~HHD~~~l~nGn~L~l~~  208 (477)
T PF05935_consen  177 KVI-WEYDLPGGYYDFHHDIDELPNGNLLILAS  208 (477)
T ss_dssp             -EE-EEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred             CEE-EeeecCCcccccccccEECCCCCEEEEEe
Confidence            531 112333321 2233345789999877665

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=83.22  E-value=17  Score=35.70  Aligned_cols=70  Identities=9%  Similarity=0.001  Sum_probs=38.4

Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCcccceecccCCC-cccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQEPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       196 ~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~--g~~~~~~~l~~~~~-~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      +..+.||+.|+.+.+..          |-+-....  ......-++..+.. -....+||||+.-|||...        .
T Consensus         3 ~~~~~~Gk~lAi~qd~~----------iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S--------~   64 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQC----------IEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES--------T   64 (282)
T ss_pred             eeecCCCcEEEEEeccE----------EEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC--------C
Confidence            45788999888876632          21111111  11000112332221 1234579999999999862        3


Q ss_pred             eEEEEEEecCC
Q 006979          273 AELWVGYISEN  283 (623)
Q Consensus       273 ~~L~v~d~~~~  283 (623)
                      +.|.++|+.+.
T Consensus        65 G~i~vfdl~g~   75 (282)
T PF15492_consen   65 GTIRVFDLMGS   75 (282)
T ss_pred             CeEEEEecccc
Confidence            44888888754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=82.95  E-value=41  Score=34.25  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=43.2

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEE
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE  262 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~  262 (623)
                      .....+.+-|.|.+|+-...|         +.+...+.++|--  +.++....+.+-..+.+-||+-+|-.+
T Consensus       194 h~vS~V~f~P~gd~ilS~srD---------~tik~We~~tg~c--v~t~~~h~ewvr~v~v~~DGti~As~s  254 (406)
T KOG0295|consen  194 HGVSSVFFLPLGDHILSCSRD---------NTIKAWECDTGYC--VKTFPGHSEWVRMVRVNQDGTIIASCS  254 (406)
T ss_pred             cceeeEEEEecCCeeeecccc---------cceeEEeccccee--EEeccCchHhEEEEEecCCeeEEEecC
Confidence            345677888999877654443         4578888888852  556677777887788899998665443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=82.26  E-value=37  Score=34.07  Aligned_cols=129  Identities=12%  Similarity=0.022  Sum_probs=64.2

Q ss_pred             EEEEEcCCCCcccceecccCCC----c--ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-eeeeE-EEcC
Q 006979          223 IVAIALNGQNIQEPKVLVSGSD----F--YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRV-CVAG  294 (623)
Q Consensus       223 L~~idl~~g~~~~~~~l~~~~~----~--~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~~~~~-~~~~  294 (623)
                      |.++|.-+|+   .+.-....+    .  .-...|||||.+|+ ..        .+..|.++|+.-.|. -.... +..+
T Consensus       135 Ih~wdaftG~---lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aG--------ykrcirvFdt~RpGr~c~vy~t~~~~  202 (406)
T KOG2919|consen  135 IHLWDAFTGK---LRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AG--------YKRCIRVFDTSRPGRDCPVYTTVTKG  202 (406)
T ss_pred             eeeeeccccc---cccchhhhhhHHhhhhheeEEecCCCCeEe-ec--------ccceEEEeeccCCCCCCcchhhhhcc
Confidence            7888988887   443333221    1  12356999999985 43        234588888854332 01111 1121


Q ss_pred             CCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe-ecccccccccccccCcceeEEeecCCCCEEE
Q 006979          295 FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIA  372 (623)
Q Consensus       295 ~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~  372 (623)
                      .. .....++..+++|-.. ++.+... .....||.-  +++..-.+. .....++...|..            +|++|+
T Consensus       203 k~-gq~giisc~a~sP~~~~~~a~gsY-~q~~giy~~--~~~~pl~llggh~gGvThL~~~e------------dGn~lf  266 (406)
T KOG2919|consen  203 KF-GQKGIISCFAFSPMDSKTLAVGSY-GQRVGIYND--DGRRPLQLLGGHGGGVTHLQWCE------------DGNKLF  266 (406)
T ss_pred             cc-cccceeeeeeccCCCCcceeeecc-cceeeeEec--CCCCceeeecccCCCeeeEEecc------------CcCeec
Confidence            11 1114556778887543 4433322 122344443  344433333 2233444455554            777777


Q ss_pred             EEEEECC
Q 006979          373 CSYRQNG  379 (623)
Q Consensus       373 ~~~~~~g  379 (623)
                      .-++.+.
T Consensus       267 sGaRk~d  273 (406)
T KOG2919|consen  267 SGARKDD  273 (406)
T ss_pred             ccccCCC
Confidence            6554433

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=82.14  E-value=55  Score=32.38  Aligned_cols=163  Identities=12%  Similarity=0.068  Sum_probs=91.8

Q ss_pred             CCHHHHhccC----CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEe
Q 006979           79 LTADVVSGAS----KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF  153 (623)
Q Consensus        79 ~t~~~~~~~~----~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s  153 (623)
                      .|.|.+..-+    .++.-+-|.| ++.+.-+.     +...++|.++..  .+....++...+... -+++-.+.|.+.
T Consensus       110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-----dn~i~l~~l~es--s~~vaev~ss~s~e~-~~~ftsg~WspH  181 (370)
T KOG1007|consen  110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-----DNNIVLWSLDES--SKIVAEVLSSESAEM-RHSFTSGAWSPH  181 (370)
T ss_pred             chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-----cCceEEEEcccC--cchheeecccccccc-cceecccccCCC
Confidence            4667765522    2455677888 77776665     345566766543  232222332212221 234446678776


Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      .|.--+....++.|+.+|+.+- ...-.+...   -..+..+..|.|+-+++++...|.        ..+.+.|...-+ 
T Consensus       182 Hdgnqv~tt~d~tl~~~D~RT~-~~~~sI~dA---Hgq~vrdlDfNpnkq~~lvt~gDd--------gyvriWD~R~tk-  248 (370)
T KOG1007|consen  182 HDGNQVATTSDSTLQFWDLRTM-KKNNSIEDA---HGQRVRDLDFNPNKQHILVTCGDD--------GYVRIWDTRKTK-  248 (370)
T ss_pred             CccceEEEeCCCcEEEEEccch-hhhcchhhh---hcceeeeccCCCCceEEEEEcCCC--------ccEEEEeccCCC-
Confidence            5522223335667999999864 122222221   135677888999999998887765        456677775533 


Q ss_pred             ccceecccCCCcccceeeCCCCCEEEEEE
Q 006979          234 QEPKVLVSGSDFYAFPRMDPRGERMAWIE  262 (623)
Q Consensus       234 ~~~~~l~~~~~~~~~p~wSPDG~~la~~~  262 (623)
                      .+++.|.....++-..++.|--..|....
T Consensus       249 ~pv~el~~HsHWvW~VRfn~~hdqLiLs~  277 (370)
T KOG1007|consen  249 FPVQELPGHSHWVWAVRFNPEHDQLILSG  277 (370)
T ss_pred             ccccccCCCceEEEEEEecCccceEEEec
Confidence            11344544455555567777666665544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=81.60  E-value=25  Score=36.12  Aligned_cols=163  Identities=8%  Similarity=-0.021  Sum_probs=0.0

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-ccceecccCCCcccceeeCCCCCEEEEEEecCCCCC
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP  269 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p  269 (623)
                      ....+...+|+|+.|+.....         -++++++..+... .........+......++--+.+++...  +..+  
T Consensus        63 ~a~~~~~~s~~~~llAv~~~~---------K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~--dkag--  129 (390)
T KOG3914|consen   63 LAPALVLTSDSGRLVAVATSS---------KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVA--DKAG--  129 (390)
T ss_pred             ccccccccCCCceEEEEEeCC---------CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEE--eecC--


Q ss_pred             CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccccc
Q 006979          270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR  349 (623)
Q Consensus       270 ~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~  349 (623)
                       +...+.+...+.+    ..+.+.|.-    -.+.++.|+||++++..+|+ .+.-++-++ +...-.....-+..+|..
T Consensus       130 -D~~~~di~s~~~~----~~~~~lGhv----Sml~dVavS~D~~~IitaDR-DEkIRvs~y-pa~f~IesfclGH~eFVS  198 (390)
T KOG3914|consen  130 -DVYSFDILSADSG----RCEPILGHV----SMLLDVAVSPDDQFIITADR-DEKIRVSRY-PATFVIESFCLGHKEFVS  198 (390)
T ss_pred             -Cceeeeeeccccc----Ccchhhhhh----hhhheeeecCCCCEEEEecC-CceEEEEec-CcccchhhhccccHhhee


Q ss_pred             ccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979          350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (623)
Q Consensus       350 ~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~  392 (623)
                      ---.             -.++.++++  .|..+|++.|..+|+
T Consensus       199 ~isl-------------~~~~~LlS~--sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  199 TISL-------------TDNYLLLSG--SGDKTLRLWDITSGK  226 (390)
T ss_pred             eeee-------------ccCceeeec--CCCCcEEEEecccCC

>PF15525 DUF4652: Domain of unknown function (DUF4652)

Probab=81.56  E-value=21  Score=32.90  Aligned_cols=88  Identities=17%  Similarity=0.209  Sum_probs=60.3

Q ss_pred             CCCCCEEEEEEecCCCCCCC-ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCC----eee
Q 006979          252 DPRGERMAWIEWHHPNMPWD-KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG----FWN  326 (623)
Q Consensus       252 SPDG~~la~~~~~~~~~p~~-~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g----~~~  326 (623)
                      |-+|++=|.+....++..|. -+.||+.++..+.   ...+..+..+ -...+-...|..|..|+++-....|    ..+
T Consensus        66 s~~~~~saciegkg~~a~eEgiGkIYIkn~~~~~---~~~L~i~~~~-~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGn  141 (200)
T PF15525_consen   66 SENGKYSACIEGKGPEAEEEGIGKIYIKNLNNNN---WWSLQIDQNE-EKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGN  141 (200)
T ss_pred             ccCCceeEEEEcCCCccccccceeEEEEecCCCc---eEEEEecCcc-cccCCceeEEecCCcEEEEEccccceEccCCe
Confidence            67799999998777765564 4789999998773   3434344331 1145567889888775544332234    368


Q ss_pred             EEEEecCCCeEEEEeec
Q 006979          327 LHKWIESNNEVLAIYSL  343 (623)
Q Consensus       327 L~~~d~~~~~~~~l~~~  343 (623)
                      ||.+++.+++...|+..
T Consensus       142 Ly~~nl~tg~~~~ly~~  158 (200)
T PF15525_consen  142 LYKYNLNTGNLTELYEW  158 (200)
T ss_pred             EEEEEccCCceeEeeec
Confidence            99999999999988853

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=81.54  E-value=71  Score=34.72  Aligned_cols=205  Identities=14%  Similarity=0.073  Sum_probs=0.0

Q ss_pred             cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979          194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~  273 (623)
                      +...+||||++++.+--        ...+|-++|+..-.+.-.+-+  +++.+...-.|-|=.+++|++.|+        
T Consensus        55 t~ik~s~DGqY~lAtG~--------YKP~ikvydlanLSLKFERhl--Dae~V~feiLsDD~SK~v~L~~DR--------  116 (703)
T KOG2321|consen   55 TRIKVSPDGQYLLATGT--------YKPQIKVYDLANLSLKFERHL--DAEVVDFEILSDDYSKSVFLQNDR--------  116 (703)
T ss_pred             ceeEecCCCcEEEEecc--------cCCceEEEEcccceeeeeecc--cccceeEEEeccchhhheEeecCc--------


Q ss_pred             EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe-EEEEeecccccccccc
Q 006979          274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLW  352 (623)
Q Consensus       274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~-~~~l~~~~~~~~~~~w  352 (623)
                         .+++...........++...    ..+.--.|+-|  ||++...    ..||+++++-|. +.++...    .+..|
T Consensus       117 ---~IefHak~G~hy~~RIP~~G----RDm~y~~~scD--ly~~gsg----~evYRlNLEqGrfL~P~~~~----~~~lN  179 (703)
T KOG2321|consen  117 ---TIEFHAKYGRHYRTRIPKFG----RDMKYHKPSCD--LYLVGSG----SEVYRLNLEQGRFLNPFETD----SGELN  179 (703)
T ss_pred             ---eeeehhhcCeeeeeecCcCC----ccccccCCCcc--EEEeecC----cceEEEEccccccccccccc----cccce


Q ss_pred             cccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcc-eEee-eecCCEEEEEEecCCCCCeEEEEE
Q 006979          353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD-IDNI-TLGNDCLFVEGASGVEPSSVAKVT  430 (623)
Q Consensus       353 ~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~-v~~~-~~~~~~~~~~~~s~~~~~~ly~~~  430 (623)
                      +.+.+..+=|.........+=.......+++-.++....-....-..... +..+ ..+++.=+.++.+.   .++|.+|
T Consensus       180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~---G~v~iyD  256 (703)
T KOG2321|consen  180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST---GSVLIYD  256 (703)
T ss_pred             eeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC---CcEEEEE


Q ss_pred             cCCCcc
Q 006979          431 LDDHKL  436 (623)
Q Consensus       431 l~~~~~  436 (623)
                      +...++
T Consensus       257 LRa~~p  262 (703)
T KOG2321|consen  257 LRASKP  262 (703)
T ss_pred             cccCCc

>PLN02408 phospholipase A1

Probab=81.23  E-value=2.2  Score=44.03  Aligned_cols=37  Identities=22%  Similarity=0.077  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       556 ~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      +.+.+.+..++++..-.+.+|.|.|||+||.++..++
T Consensus       182 ~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA  218 (365)
T PLN02408        182 EMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTA  218 (365)
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHH
Confidence            4566677777665322234799999999999998877

>cd00519 Lipase_3 Lipase (class 3)

Probab=80.95  E-value=2.4  Score=41.08  Aligned_cols=51  Identities=12%  Similarity=-0.035  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-c-C----CCceeEEEecccC
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-A-F----RDTFKAGASLYGV  607 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~-~----~~~f~a~v~~~g~  607 (623)
                      ..++...++.+.++  -...+|.+.|||+||.++..++ . .    +..+.+..-.+|.
T Consensus       111 ~~~~~~~~~~~~~~--~p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~  167 (229)
T cd00519         111 YNQVLPELKSALKQ--YPDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPR  167 (229)
T ss_pred             HHHHHHHHHHHHhh--CCCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence            34555555555554  2346899999999999998766 2 1    3446655545544

Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.

>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]

Probab=80.71  E-value=3.1  Score=44.35  Aligned_cols=108  Identities=18%  Similarity=0.217  Sum_probs=60.9

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-----------C------HHhHHHHcCceEEEEECCCCCCC
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-----------N------LSIQYWTSRGWAFVDVNYGGSTG  537 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-----------~------~~~~~~a~~G~~v~~~d~rGs~~  537 (623)
                      ...|.+.+.+.      ..+.|+|+++.|||+......+           .      ....-|.+++ .++-+|.+=++|
T Consensus        87 ~ffy~fe~~nd------p~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~a-dLvFiDqPvGTG  159 (498)
T COG2939          87 FFFYTFESPND------PANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFA-DLVFIDQPVGTG  159 (498)
T ss_pred             EEEEEecCCCC------CCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccCC-ceEEEecCcccC
Confidence            44455655441      4678999999999964432211           0      1334466665 556678554566


Q ss_pred             CchhHHHhhccC-CccchHHHHHHHHHHH----HhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          538 YGREFRERLLGR-WGIVDVNDCCSCATFL----VGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       538 ~g~~~~~~~~~~-~g~~~~~D~~~~~~~l----~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      |.++-.+....+ ++  .-+|+....+.+    .+.... ..+..|.|-||||+-.-..+
T Consensus       160 fS~a~~~e~~~d~~~--~~~D~~~~~~~f~~~fp~~~r~-~~~~~L~GESYgg~yip~~A  216 (498)
T COG2939         160 FSRALGDEKKKDFEG--AGKDVYSFLRLFFDKFPHYARL-LSPKFLAGESYGGHYIPVFA  216 (498)
T ss_pred             cccccccccccchhc--cchhHHHHHHHHHHHHHHHhhh-cCceeEeeccccchhhHHHH
Confidence            655411111111 22  234555555543    333222 25889999999999877665

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=80.65  E-value=63  Score=32.06  Aligned_cols=103  Identities=11%  Similarity=0.055  Sum_probs=64.0

Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCC--EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE--RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~--~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~  298 (623)
                      ..|-+.|..+-+   ......-.+.+..-+|||=..  .|.-+..+       ..++.++|+..+.   -...+.|..  
T Consensus       124 htlKVWDtnTlQ---~a~~F~me~~VYshamSp~a~sHcLiA~gtr-------~~~VrLCDi~SGs---~sH~LsGHr--  188 (397)
T KOG4283|consen  124 HTLKVWDTNTLQ---EAVDFKMEGKVYSHAMSPMAMSHCLIAAGTR-------DVQVRLCDIASGS---FSHTLSGHR--  188 (397)
T ss_pred             ceEEEeecccce---eeEEeecCceeehhhcChhhhcceEEEEecC-------CCcEEEEeccCCc---ceeeecccc--
Confidence            567888887754   333333344444567898654  22223323       3458899999883   455666665  


Q ss_pred             ccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEe
Q 006979          299 IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (623)
Q Consensus       299 ~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~  341 (623)
                        ..+-.+.|+|... +++.... +|.-+||-+.-.+|-.+.+.
T Consensus       189 --~~vlaV~Wsp~~e~vLatgsa-Dg~irlWDiRrasgcf~~lD  229 (397)
T KOG4283|consen  189 --DGVLAVEWSPSSEWVLATGSA-DGAIRLWDIRRASGCFRVLD  229 (397)
T ss_pred             --CceEEEEeccCceeEEEecCC-CceEEEEEeecccceeEEee
Confidence              5677889999988 5554444 67777776655556666554

>PLN02571 triacylglycerol lipase

Probab=80.20  E-value=2.6  Score=44.19  Aligned_cols=38  Identities=21%  Similarity=0.135  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      .+++.+.++.++++..-..-+|.|+|||+||.+|+.++
T Consensus       207 r~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA  244 (413)
T PLN02571        207 RDQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNA  244 (413)
T ss_pred             HHHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHH
Confidence            45677777777665221123799999999999998876

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=80.16  E-value=83  Score=33.13  Aligned_cols=62  Identities=15%  Similarity=0.172  Sum_probs=37.5

Q ss_pred             ccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeeccc-C-CcceEee--eecCCEEEEE
Q 006979          348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI-P-FTDIDNI--TLGNDCLFVE  416 (623)
Q Consensus       348 ~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~-~-~~~v~~~--~~~~~~~~~~  416 (623)
                      ..+.|..   ++..+    .+..|+.+...+|.-+||.+...-.+++.|.. + .+.|..+  +.+++++++-
T Consensus       378 ~~~~Wit---sla~i----~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  378 NGNFWIT---SLAVI----PGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             cccccee---eeEec----ccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence            3345763   55565    46668888888999999999765445554432 1 2335555  4555544443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=80.09  E-value=97  Score=36.87  Aligned_cols=49  Identities=2%  Similarity=-0.115  Sum_probs=30.5

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEec
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRED  211 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~  211 (623)
                      .+.+. ...|.|.++|+.+.  ....+...    ..-....+||||++.++.+...
T Consensus        82 ~i~v~-~~~G~iilvd~et~--~~eivg~v----d~GI~aaswS~Dee~l~liT~~  130 (1265)
T KOG1920|consen   82 SICVI-TALGDIILVDPETL--ELEIVGNV----DNGISAASWSPDEELLALITGR  130 (1265)
T ss_pred             eEEEE-ecCCcEEEEccccc--ceeeeeec----cCceEEEeecCCCcEEEEEeCC
Confidence            44443 35677888887765  33333332    2334557799999988888653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	623
3azo_A	662	Crystal Structure Of Puromycin Hydrolase Length = 6		1e-69
3azp_A	662	Crystal Structure Of Puromycin Hydrolase S511a Muta		1e-65
1ve6_A	582	Crystal Structure Of An Acylpeptide HydrolaseESTERA		6e-08
3o4j_A	582	Structure And Catalysis Of Acylaminoacyl Peptidase		6e-08
3o4h_A	582	Structure And Catalysis Of Acylaminoacyl Peptidase		6e-08
2qzp_A	562	Crystal Structure Of Mutation Of An Acylptide Hydro		7e-08
2hu8_A	582	Binding Of Inhibitors By Acylaminoacyl Peptidase Le		1e-07
2qr5_A	582	Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut		9e-07
1z68_A	719	Crystal Structure Of Human Fibroblast Activation Pr		5e-06

>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase Length = 662

Iteration: 1
 Score =  261 bits (666), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 184/553 (33%), Positives = 272/553 (49%), Gaps = 34/553 (6%)
Query: 69  TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
           TAPYG+W+SP+ A +V+  S R       G   + W+  RP EAGR  LV+  A   +E 
Sbjct: 4   TAPYGAWQSPIDAALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEES 62
Query: 129 SDITPKEYAVRTTAQEYGG----GAFR-IFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPI 182
           +   P  + VR    EY G    G  R   G  ++F+++ DQRLY    D+   + P P+
Sbjct: 63  A--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TP--DYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239
           TP    G  L  +AD +  P R   +    E   +   +    + A+ L+G    +   +
Sbjct: 121 TPVSAVGGGL-RWADPVLLPERGEVWCXAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179
Query: 240 VSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAG 294
              SD    F   PR+ P G +  W+ W HP  PW+  EL    ++E+G     R  + G
Sbjct: 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRXPWEGTELKTARVTEDGRFADTRTLLGG 239
Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
            +  I ++    +W+  G L   TDR  G+WNLH+   +      +   + EF+ PLW  
Sbjct: 240 PEEAIAQA----EWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294
Query: 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF 414
           G   +  + +     LIA  +   G + LGILD     L     P+T+    TL      
Sbjct: 295 GXRWFAPLAN----GLIAVVH-GKGAAVLGILDPESGELVDAAGPWTEW-AATLTVSGTR 348
Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
             G +    ++   V LD    +A   + + +   D +   +Y+  P++  F T   G++
Sbjct: 349 AVGVAASPRTAYEVVELDTVTGRA---RTIGARHTDPVD-PAYYPEPQIRTF-TAPDGRE 403
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
            +A+ YPP +P +    +E PP +V +HGGPTS    +L+L + Y+TSRG    DVNYGG
Sbjct: 404 IHAHIYPPHSPDFTGPADELPPYVVXAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGG 463
Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
           STGYGR +RERL GRWG+VDV DC + AT L   G AD  RL + GGSAGG+T  ++L  
Sbjct: 464 STGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS 523
Query: 595 RDTFKAGASLYGV 607
            D +  G  LY V
Sbjct: 524 TDVYACGTVLYPV 536

>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant Length = 662

Iteration: 1
 Score =  247 bits (631), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 183/553 (33%), Positives = 274/553 (49%), Gaps = 34/553 (6%)
Query: 69  TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
           TAPYG+W+SP+ A +V+  S R       G   + W+  RP EAGR  LV+  A   +E 
Sbjct: 4   TAPYGAWQSPIDAALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEES 62
Query: 129 SDITPKEYAVRTTAQEYGG----GAFR-IFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPI 182
           +   P  + VR    EY G    G  R   G  ++F+++ DQRLY    D+   + P P+
Sbjct: 63  A--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE-IVAIALNGQNIQEPKVL 239
           TP    G  L  +AD +  P       + E+   +  +     + A+ L+G    +   +
Sbjct: 121 TPVSAVGGGL-RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179
Query: 240 VSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAG 294
              SD    F   PR+ P G +  W+ W HP MPW+  EL    ++E+G     R  + G
Sbjct: 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239
Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
            +  I ++    +W+  G L   TDR  G+WNLH+   +      +   + EF+ PLW  
Sbjct: 240 PEEAIAQA----EWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294
Query: 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF 414
           G+  +  + +     LIA  +   G + LGILD     L     P+T+    TL      
Sbjct: 295 GMRWFAPLAN----GLIAVVH-GKGAAVLGILDPESGELVDAAGPWTEW-AATLTVSGTR 348
Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
             G +    ++   V LD    +A   + + +   D +   +Y+  P++  F T   G++
Sbjct: 349 AVGVAASPRTAYEVVELDTVTGRA---RTIGARHTDPVD-PAYYPEPQIRTF-TAPDGRE 403
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
            +A+ YPP +P +    +E PP +V +HGGPTS    +L+L + Y+TSRG    DVNYGG
Sbjct: 404 IHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGG 463
Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
           STGYGR +RERL GRWG+VDV DC + AT L   G AD  RL + GG+AGG+T  ++L  
Sbjct: 464 STGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGAAGGWTAASSLVS 523
Query: 595 RDTFKAGASLYGV 607
            D +  G  LY V
Sbjct: 524 TDVYACGTVLYPV 536

>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
           P +V  HGGP +E     +       + G+  V  NY GSTGYG E+R +++G     ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
            D  + A +   SG A E  L I G S GGY TL AL  +   FKAG +  G S  V+  
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 474
Query: 615 EELWSIS 621
           EE++ +S
Sbjct: 475 EEMYELS 481

>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
           P +V  HGGP +E     +       + G+  V  NY GSTGYG E+R +++G     ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
            D  + A +   SG A E  L I G S GGY TL AL  +   FKAG +  G S  V+  
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 474
Query: 615 EELWSIS 621
           EE++ +S
Sbjct: 475 EEMYELS 481

>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
           P +V  HGGP +E     +       + G+  V  NY GSTGYG E+R +++G     ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
            D  + A +   SG A E  L I G S GGY TL AL  +   FKAG +  G S  V+  
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 474
Query: 615 EELWSIS 621
           EE++ +S
Sbjct: 475 EEMYELS 481

>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
           P +V  HGGP +E     +       + G+  V  NY GSTGYG E+R +++G     ++
Sbjct: 341 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 400
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
            D  + A +   SG A E  L I G S GGY TL AL  +   FKAG +  G S  V+  
Sbjct: 401 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 454
Query: 615 EELWSIS 621
           EE++ +S
Sbjct: 455 EEMYELS 461

>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
           P +V  HGGP +E     +       + G+  V  NY GSTGYG E+R +++G     ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
            D  + A +   SG A E  L I G + GGY TL AL  +   FKAG +  G S  V+  
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYAYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 474
Query: 615 EELWSIS 621
           EE++ +S
Sbjct: 475 EEMYELS 481

>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
           P +V   GGP +E     +       + G+  V  NY GSTGYG E+R +++G     ++
Sbjct: 361 PTVVLVAGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVSIPVIIS 614
            D  + A +   SG A E  L I G S GGY TL AL  +   FKAG +  G S  V+  
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVA--GAS--VVDW 474
Query: 615 EELWSIS 621
           EE++ +S
Sbjct: 475 EEMYELS 481

>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein Alpha Length = 719

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 488 QASPEEKPPLLVKSHGGPTSEA-RGILNLS-IQYWTSR-GWAFVDVNYGGSTGYGREFRE 544
           Q    +K PLL++ +GGP S++ R +  ++ I Y  S+ G     V+  G+   G +   
Sbjct: 489 QFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLY 548
Query: 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-RDTFKAGAS 603
            +  + G+ +V D  +     +  G  DEKR+ I G S GGY +  ALA     FK G +
Sbjct: 549 AVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIA 608
Query: 604 LYGVS 608
           +  VS
Sbjct: 609 VAPVS 613

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	623
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	1e-173
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	5e-57
3fcy_A	346	Xylan esterase 1; alpha/beta hydrolase, carbohydra	1e-19
1l7a_A	318	Cephalosporin C deacetylase; structural genomics,	7e-19
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	1e-18
3ksr_A	290	Putative serine hydrolase; catalytic triad, struct	2e-17
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	4e-17
1ufo_A	238	Hypothetical protein TT1662; alpha-beta fold, hydr	3e-16
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	1e-15
2jbw_A	386	Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine	1e-14
1vlq_A	337	Acetyl xylan esterase; TM0077, structural genomics	2e-14
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	2e-14
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	1e-13
3k2i_A	422	Acyl-coenzyme A thioesterase 4; alpha/beta hydrola	3e-11
3doh_A	380	Esterase; alpha-beta hydrolase, beta sheet; 2.60A	2e-10
3hlk_A	446	Acyl-coenzyme A thioesterase 2, mitochondrial; alp	3e-10
2wtm_A	251	EST1E; hydrolase; 1.60A {Clostridium proteoclastic	1e-09
3mve_A	415	FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
3fnb_A	405	Acylaminoacyl peptidase SMU_737; alpha-beta-alpha	2e-06
3g8y_A	391	SUSD/RAGB-associated esterase-like protein; struct	5e-06
2o2g_A	223	Dienelactone hydrolase; YP_324580.1, structural ge	6e-06
3nuz_A	398	Putative acetyl xylan esterase; structural genomic	1e-05
3h04_A	275	Uncharacterized protein; protein with unknown func	1e-04
2hdw_A	367	Hypothetical protein PA2218; alpha/beta hydrolase	2e-04
4ao6_A	259	Esterase; hydrolase, thermo label; 1.60A {Unidenti	2e-04
2fx5_A	258	Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse	3e-04
3vis_A	306	Esterase; alpha/beta-hydrolase fold, polyethylene	4e-04

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662

 Score =  507 bits (1308), Expect = e-173
 Identities = 169/553 (30%), Positives = 259/553 (46%), Gaps = 32/553 (5%)

Query: 69  TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
           TAPYG+W+SP+ A +V+  S R       G   + W+  RP EAGR  LV+  A      
Sbjct: 4   TAPYGAWQSPIDAALVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRA--DGAE 60

Query: 129 SDITPKEYAVRTTAQEYGGGAFRIF-----GDTVIFSNYKDQRLYKHSIDSK-DSSPLPI 182
               P  + VR    EY G  +        G  ++F+++ DQRLY    D+   + P P+
Sbjct: 61  ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120

Query: 183 TPDYGEP-LVSYADGIFDPRFNRYVTVREDRRQDAL-NSTTEIVAIALNGQNIQEPK--- 237
           TP       + +AD +  P       + E+   +   +    + A+ L+G    +     
Sbjct: 121 TPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180

Query: 238 -VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 296
            +      F   PR+ P G +  W+ W HP MPW+  EL    ++E+G       + G  
Sbjct: 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240

Query: 297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGI 356
               E+  + +W+  G L   TDR  G+WNLH+   +      +   + EF+ PLW  G+
Sbjct: 241 E---EAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM 296

Query: 357 NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFV 415
             +  + +      +       G + LGILD     L     P+T+    +T+       
Sbjct: 297 RWFAPLANG-----LIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVG 351

Query: 416 EGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKA 475
             AS      V ++     + +      + +   D +   +Y+  P++  F     G++ 
Sbjct: 352 VAASPRTAYEVVELDTVTGRAR-----TIGARHTDPVD-PAYYPEPQIRTFTAP-DGREI 404

Query: 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535
           +A+ YPP +P +    +E PP +V +HGGPTS    +L+L + Y+TSRG    DVNYGGS
Sbjct: 405 HAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGS 464

Query: 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR 595
           TGYGR +RERL GRWG+VDV DC + AT L   G AD  RL + GGSAGG+T  ++L   
Sbjct: 465 TGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVST 524

Query: 596 DTFKAGASLYGVS 608
           D +  G  LY V 
Sbjct: 525 DVYACGTVLYPVL 537

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582

 Score =  201 bits (512), Expect = 5e-57
 Identities = 80/413 (19%), Positives = 138/413 (33%), Gaps = 51/413 (12%)

Query: 199 DPRFNRYVTVREDRRQDALNSTTE--IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256
             +  R ++  +          TE  +   AL+G      + L     F      D RG+
Sbjct: 108 AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG---GLRELARLPGFGFVS--DIRGD 162

Query: 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 316
            +A + +        +  L+      +G +         +     S +    S   ++  
Sbjct: 163 LIAGLGFF----GGGRVSLFT-SNLSSGGLRV---FDSGE----GSFSSASISPGMKVTA 210

Query: 317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376
             +       L      +  V  +     +FS       I        +     +A   R
Sbjct: 211 GLETA-REARLVTVDPRDGSVEDLELPSKDFS-SYRPTAITWL----GYLPDGRLAVVAR 264

Query: 377 QNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436
           + GRS + I  +       ++ P  +   + L    L     S   P  +  V+L   + 
Sbjct: 265 REGRSAVFIDGE------RVEAPQGNHGRVVLWRGKLVTSHTSLSTPPRI--VSLPSGE- 315

Query: 437 KAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPP 496
                 ++    P+ L+     +   L+   +   G +   Y                 P
Sbjct: 316 -----PLLEGGLPEDLRRS--IAGSRLVWVESF-DGSRVPTYVLES------GRAPTPGP 361

Query: 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN 556
            +V  HGGP +E     +       + G+  V  NY GSTGYG E+R +++G     ++ 
Sbjct: 362 TVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELE 421

Query: 557 DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVS 608
           D  + A +   SG A    L I G S GGY TL AL  +   FKAG +   V 
Sbjct: 422 DVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVV 472

>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346

 Score = 89.9 bits (223), Expect = 1e-19
 Identities = 36/190 (18%), Positives = 65/190 (34%), Gaps = 31/190 (16%)

Query: 435 KLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEK 494
           ++++VD K+    S   + +   +     + F   V G + +A Y  P         E K
Sbjct: 60  EMRSVDPKIELKESSFQVSFAECY----DLYFTG-VRGARIHAKYIKPKT-------EGK 107

Query: 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW---- 550
            P L++ HG     +          + + G+  V ++  G  G  ++             
Sbjct: 108 HPALIRFHGYS---SNSGDWNDKLNYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHI 164

Query: 551 --GIVD----------VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTF 598
             G+ D            D    A  ++   + DE R+ + G S GG  +LA  A     
Sbjct: 165 IRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRV 224

Query: 599 KAGASLYGVS 608
           +   S Y   
Sbjct: 225 RKVVSEYPFL 234

>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318

 Score = 86.8 bits (215), Expect = 7e-19
 Identities = 30/161 (18%), Positives = 47/161 (29%), Gaps = 24/161 (14%)

Query: 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 520
              + + +     +   +Y  P         E   P +VK HG     +       +  W
Sbjct: 56  VYRLTYKS-FGNARITGWYAVPDK-------EGPHPAIVKYHGYN--ASYDGEIHEMVNW 105

Query: 521 TSRGWAFVDVNYGGSTGYGREF--------------RERLLGRWGIVDVNDCCSCATFLV 566
              G+A   +   G                             +      D       + 
Sbjct: 106 ALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVIS 165

Query: 567 GSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGV 607
              + DE R+ +TGGS GG  T+AA A  D  KA  + Y  
Sbjct: 166 SFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPY 206

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740

 Score = 89.1 bits (221), Expect = 1e-18
 Identities = 55/315 (17%), Positives = 95/315 (30%), Gaps = 25/315 (7%)

Query: 303 PTEPKWSSKG-ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 361
           P+EP ++  G   + +   + G+ ++  +     +   I     E      +     Y I
Sbjct: 321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYI 380

Query: 362 IQSH----GEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEG 417
              +    G +NL         +      +          + F+            +   
Sbjct: 381 SNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSK-------EAKYYQLR 433

Query: 418 ASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYA 477
            SG         +  + K   V        +    K      +P        +   K + 
Sbjct: 434 CSGPGLPLYTLHSSVNDKGLRV-----LEDNSALDKMLQNVQMPSKKLDFIILNETKFWY 488

Query: 478 YYYPPSNPIYQASPEEKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYGG 534
               P +        +K PLL+  + GP S+       LN +    ++        +  G
Sbjct: 489 QMILPPH----FDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRG 544

Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
           S   G +    +  R G  +V D    A      G  D KR+ I G S GGY T   L  
Sbjct: 545 SGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGS 604

Query: 595 R-DTFKAGASLYGVS 608
               FK G ++  VS
Sbjct: 605 GSGVFKCGIAVAPVS 619

>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290

 Score = 82.2 bits (203), Expect = 2e-17
 Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 18/141 (12%)

Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
             IE P      +       P             P ++  HG     ++    +  +   
Sbjct: 7   SSIEIPVG--QDELSGTLLTP----------TGMPGVLFVHGWG--GSQHHSLVRAREAV 52

Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
             G   +  +  G  GY    +     +     ++D  +    L      D   + + G 
Sbjct: 53  GLGCICMTFDLRGHEGYASMRQSVTRAQN----LDDIKAAYDQLASLPYVDAHSIAVVGL 108

Query: 582 SAGGYTTLAALAFRDTFKAGA 602
           S GGY +      R       
Sbjct: 109 SYGGYLSALLTRERPVEWLAL 129

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719

 Score = 84.1 bits (208), Expect = 4e-17
 Identities = 54/316 (17%), Positives = 100/316 (31%), Gaps = 26/316 (8%)

Query: 303 PTEPKWSSKGELFFVT-DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 361
            + P +S     ++     K+G+ ++H   ++    + I S   E      V   + +  
Sbjct: 314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFYS 373

Query: 362 IQSHG----EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDC-LFVE 416
                     +N+   S      S   +          L          +  +    +  
Sbjct: 374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCH-------LRKERCQYYTASFSDYAKYYAL 426

Query: 417 GASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAY 476
              G              +   +        + +         LP+      EV     +
Sbjct: 427 VCYGPGIPISTLHDGRTDQEIKI-----LEENKELENALKNIQLPKEEIKKLEVDEITLW 481

Query: 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYG 533
                P          +K PLL++ +GGP S+   +   +N      +  G     V+  
Sbjct: 482 YKMILPPQ----FDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGR 537

Query: 534 GSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593
           G+   G +    +  + G+ +V D  +     +  G  DEKR+ I G S GGY +  ALA
Sbjct: 538 GTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALA 597

Query: 594 FR-DTFKAGASLYGVS 608
                FK G ++  VS
Sbjct: 598 SGTGLFKCGIAVAPVS 613

>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238

 Score = 77.9 bits (191), Expect = 3e-16
 Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 6/139 (4%)

Query: 485 PIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFV--DVNYGGSTGYGREF 542
            +    PE    LL+  HG     ++  +   +  +  RG+  +  D    G        
Sbjct: 14  SVLARIPEAPKALLLALHGLQ--GSKEHILALLPGYAERGFLLLAFDAPRHGEREGPPPS 71

Query: 543 RERLLGRWGIVDVNDCCS--CATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKA 600
            +       +  V              + +     L + GGS G +     LA     + 
Sbjct: 72  SKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRG 131

Query: 601 GASLYGVSIPVIISEELWS 619
             +  G   P+ + +    
Sbjct: 132 VLAFIGSGFPMKLPQGQVV 150

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741

 Score = 79.8 bits (197), Expect = 1e-15
 Identities = 63/330 (19%), Positives = 111/330 (33%), Gaps = 41/330 (12%)

Query: 296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH--------KWIESNN-EVLAIYSLDAE 346
            PT V      ++   G + + ++R  GF +L+          +   N  V  + ++D +
Sbjct: 332 SPTWVPLHNSLRFLDDGSILWSSER-TGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEK 390

Query: 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI 406
                  +     E   S  E  + A   +      L       HS S            
Sbjct: 391 AG---LAYFRAGIE---SARESQIYAVPLQGGQPQRLSK-APGMHSASFA---------- 433

Query: 407 TLGNDCLFVEGASGVE-PSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIE 465
              N  ++V+  S    P  +     +  K+  +    +        +Y+      E   
Sbjct: 434 --RNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEFGT 491

Query: 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE------ARGILNLSIQY 519
                           P+       P ++ P+ V  +GGP S+           +L  QY
Sbjct: 492 LTAADGKTPLNYSVIKPAG----FDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQY 547

Query: 520 WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCIT 579
              +G+    ++  G+   GR+F   L G+ G V+V D      +L      D  R+ + 
Sbjct: 548 LAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQ 607

Query: 580 GGSAGGYTTLAALAFR-DTFKAGASLYGVS 608
           G S GGY TL  LA   D++  G +   V+
Sbjct: 608 GWSNGGYMTLMLLAKASDSYACGVAGAPVT 637

>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386

 Score = 75.4 bits (185), Expect = 1e-14
 Identities = 26/147 (17%), Positives = 36/147 (24%), Gaps = 17/147 (11%)

Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
           E  E   +  G     Y   P  P          P ++   G  ++  +           
Sbjct: 128 ERHELVVD--GIPMPVYVRIPEGP-------GPHPAVIMLGGLEST--KEESFQMENLVL 176

Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
            RG A    +  G        R           V D       L          + + G 
Sbjct: 177 DRGMATATFDGPGQGEMFEYKRIAGDYEKYTSAVVD------LLTKLEAIRNDAIGVLGR 230

Query: 582 SAGGYTTLAALAFRDTFKAGASLYGVS 608
           S GG   L + A      A  S  G S
Sbjct: 231 SLGGNYALKSAACEPRLAACISWGGFS 257

>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337

 Score = 74.2 bits (182), Expect = 2e-14
 Identities = 33/199 (16%), Positives = 54/199 (27%), Gaps = 41/199 (20%)

Query: 440 DFKVVWSSSPDTLKYKSYFSLPELIEFPTE-----------VPGQKAYAYYYPPSNPIYQ 488
           DF   W  +    +      + E +E   +             GQ+   +   P      
Sbjct: 35  DFDEFWEETLAESEKFPLDPVFERMESHLKTVEAYDVTFSGYRGQRIKGWLLVP------ 88

Query: 489 ASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY---------GGSTGYG 539
              EEK P +V+  G               +W S G+    ++          G +  Y 
Sbjct: 89  KLEEEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYP 145

Query: 540 REFRERLLGRWGIVDV------------NDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587
               +     +    +             D            + D++R+ I GGS GG  
Sbjct: 146 EGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGI 205

Query: 588 TLAALAFRDTFKAGASLYG 606
            LA  A     KA      
Sbjct: 206 ALAVSALSKKAKALLCDVP 224

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 10/154 (6%)

Query: 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-----RGILNL 515
                          Y     P +      P +K P++V  +GGP ++      R  +  
Sbjct: 455 IRTGTIMAADGQTPLYYKLTMPLH----FDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGG 510

Query: 516 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575
              Y   +G+A   V+  GS   G  F + +  R G  ++ D      FL      D  R
Sbjct: 511 WDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADR 570

Query: 576 LCITGGSAGGYTTLAALAFR-DTFKAGASLYGVS 608
           + + G S GG+ T   +    D FK G +   V 
Sbjct: 571 IGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVI 604

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 53/362 (14%), Positives = 109/362 (30%), Gaps = 58/362 (16%)

Query: 259 AWIEWHH--PNMPWDKAELWVGYISENG--DVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314
           AW+   +  P    D  + +       G    +  + V+   P    S    +  + G+ 
Sbjct: 302 AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS--SNDNIQSITSGD- 358

Query: 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 374
           + VT        +  + E  N++  + + D    R L+            +  +  ++C 
Sbjct: 359 WDVTK-------ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG------NFNRQCLSCD 405

Query: 375 YRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH 434
             +N   +                               F+    G     V      D 
Sbjct: 406 LVENCTYFSASFSHSMD---------------------FFLLKCEGPGVPMVTVHNTTDK 444

Query: 435 KLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEK 494
           K           ++    K  +   +P++     E+           P+      +    
Sbjct: 445 KKMFD-----LETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPAT----FTDTTH 495

Query: 495 PPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG 551
            PLL+   G P S+    +  ++      +S G   V  +  GS   G +    +  R G
Sbjct: 496 YPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLG 555

Query: 552 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-----DTFKAGASLYG 606
           +++  D       ++     D  R+ + G   GGY +   L  +      TF  G++L  
Sbjct: 556 LLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSP 615

Query: 607 VS 608
           ++
Sbjct: 616 IT 617

>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422

 Score = 64.8 bits (157), Expect = 3e-11
 Identities = 24/178 (13%), Positives = 48/178 (26%), Gaps = 23/178 (12%)

Query: 438 AVDFKVVWSSSPDTLKYKSYFSLPELIEFP----TEVPGQKAYAYYYPPSNPIYQASPEE 493
            V+ +V+    P+  +             P      V   +  A  + P  P        
Sbjct: 104 VVELEVLDGHDPEPGRLLCQAQHERHFLPPGVWRQSVRAGRVRATLFLPPGP-------G 156

Query: 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 553
             P ++   G       G+L          G+A + + Y                    +
Sbjct: 157 PFPGIIDIFGIGG----GLLEYRASLLAGHGFATLALAYYNFEDLPNNMDN--------I 204

Query: 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPV 611
            +        +++   +     + + G S G    L+  +F     A  S+ G  I  
Sbjct: 205 SLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISG 262

>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 18/147 (12%)

Query: 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAF-------- 527
           Y  + P        +P+ K PL+V  HG         L ++     +  WA         
Sbjct: 160 YRLFVPKD-----VNPDRKYPLVVFLHGAGERGTDNYLQVAGNRG-AVVWAQPRYQVVHP 213

Query: 528 ---VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAG 584
              +      ++ +   F +R         +         L+     DE R+ ITG S G
Sbjct: 214 CFVLAPQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMG 273

Query: 585 GYTTLAALAFR-DTFKAGASLYGVSIP 610
           GY T  A+    + F A   + G    
Sbjct: 274 GYGTWTAIMEFPELFAAAIPICGGGDV 300

>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446

 Score = 62.1 bits (150), Expect = 3e-10
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 27/174 (15%)

Query: 438 AVDFKVVWSSSPDTLK------YKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASP 491
           AV+ +V+    PD  +      ++ YF  P +   P  V   +     + P  P      
Sbjct: 120 AVELEVLDGHDPDPGRLLCQTRHERYFLPPGVRREP--VRVGRVRGTLFLPPEP------ 171

Query: 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG 551
               P +V   G       G+L         +G+A + + Y       +           
Sbjct: 172 -GPFPGIVDMFGTGG----GLLEYRASLLAGKGFAVMALAYYNYEDLPKTMET------- 219

Query: 552 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY 605
            + +        +L+   +     + + G S GG   L+  +F     A   + 
Sbjct: 220 -LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVIN 272

>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 15/139 (10%)

Query: 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDV 530
           G K  AY   P N        EK PL +  HG    SE R I+ +  +     G A +  
Sbjct: 10  GIKLNAYLDMPKNN------PEKCPLCIIIHGFTGHSEERHIVAVQ-ETLNEIGVATLRA 62

Query: 531 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL- 589
           +  G      +F +  L +W    + +  +   +           + + G S GG + + 
Sbjct: 63  DMYGHGKSDGKFEDHTLFKW----LTNILAVVDYAKKLDFVT--DIYMAGHSQGGLSVML 116

Query: 590 AALAFRDTFKAGASLYGVS 608
           AA   RD  KA   L   +
Sbjct: 117 AAAMERDIIKALIPLSPAA 135

>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415

 Score = 58.5 bits (141), Expect = 3e-09
 Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 18/158 (11%)

Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
           + +E P E    K  A+ +  +         +KP  +V    G  S    +  L   +  
Sbjct: 169 KQLEIPFE--KGKITAHLHLTNT--------DKPHPVVIVSAGLDSLQTDMWRLFRDHLA 218

Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
               A + V+       G   +  L   +         +    L      D  R+ + G 
Sbjct: 219 KHDIAMLTVDMPSV---GYSSKYPLTEDYS----RLHQAVLNELFSIPYVDHHRVGLIGF 271

Query: 582 SAGGYTTLAALAFRDT-FKAGASLYGVSIPVIISEELW 618
             GG   +          KA   L      +  S +  
Sbjct: 272 RFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKL 309

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 7e-07
 Identities = 64/430 (14%), Positives = 122/430 (28%), Gaps = 109/430 (25%)

Query: 264 HHPNMPWDKAELWVGYISENGD---VYKRVCVAGFDPTIVESPTEPKWSSK--GELFFVT 318
           HH +M ++  E    Y     D   V++   V  FD   V+   +   S +    +    
Sbjct: 3   HHHHMDFETGEHQYQY----KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58

Query: 319 DRKNG----FWNLHKWIESNNEVLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLI 371
           D  +G    FW L   +    E++  +    L   +    ++      E  Q     +++
Sbjct: 59  DAVSGTLRLFWTL---LSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQ----PSMM 108

Query: 372 ACSYRQNGRSYLGILDDFGHSLSLLDI----PFTDIDNITLG---NDCLFVEGASGVEPS 424
              Y          L +     +  ++    P+  +    L       + ++G  G   +
Sbjct: 109 TRMYI----EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 425 SVAKVTLDDHKLKAV-DFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPS 483
            VA      +K++   DFK+ W      L  K+  S   ++E       QK      P  
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW------LNLKNCNSPETVLE-----MLQKLLYQIDPNW 213

Query: 484 NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQY----------WTSRGW-AF----- 527
               ++       L + S     +E R +L     Y            ++ W AF     
Sbjct: 214 TS--RSDHSSNIKLRIHS---IQAELRRLLKSK-PYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 528 ----------VDVNYGGST----------GYGREFRERLLGRWGIVDVND----CCSCAT 563
                      D     +T              +  + LL ++      D      +   
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 564 FLVGS-GKADEKRLC------------ITGGSAGGYTTLAALAFRDTFKAGASL-YGVSI 609
             +    ++    L             +T         L    +R  F   +       I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 610 PVIISEELWS 619
           P I+   +W 
Sbjct: 388 PTILLSLIWF 397

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 76/570 (13%), Positives = 150/570 (26%), Gaps = 176/570 (30%)

Query: 12  LTRFSASSSSASINFK-YIFSRRTVFTAS---PKRQKQRGCKIMASTSPVPETYSATQDK 67
           ++         S+  + YI  R  ++  +    K    R            + Y   +  
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-----------LQPYLKLRQA 143

Query: 68  IT----APY-------GSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGV 116
           +     A         GS K+ +  DV    S ++          + WL  +   +   V
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKMDFK---IFWLNLKNCNSPETV 198

Query: 117 LVK------EPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
           L        +        SD +        + Q                      + Y++
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-------------LRRLLKSKPYEN 245

Query: 171 SI----DSKDSSP----------LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDA 216
            +    + +++            L  T           D +          +  D     
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRF-----KQVTDFL---SAATTTHISLDHHSMT 297

Query: 217 LNS--TTEIVAIALNGQNIQEPKVLVSGSDFYA--FPRMDPRGERMAWIEWHHPNMPWDK 272
           L       ++   L+ +    P+ +++ +            R     W  W H N   DK
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVNC--DK 354

Query: 273 A----ELWVGYIS--ENGDVYKRVCVAGFD-----PTIV-------ESPTEPKWSSKGEL 314
                E  +  +   E   ++ R+ V  F      PTI+          ++        +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDV------MV 406

Query: 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC- 373
                 K     + K        ++I S+  E    L     N Y +   H  ++++   
Sbjct: 407 VVNKLHKYSL--VEKQ--PKESTISIPSIYLELKVKL----ENEYAL---H--RSIVDHY 453

Query: 374 ----SYRQNGRSYLGILDD-----FGHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVE 422
               ++  +       LD       GH L  ++ P   T    + L  D  F+E      
Sbjct: 454 NIPKTFDSDDLI-PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLE------ 504

Query: 423 PSSVAKVTLDDHKLKAVDFKVVWSSSPDTL----KYKSYFS---------LPELIEFPTE 469
                K+  D     A        S  +TL     YK Y           +  +++F   
Sbjct: 505 ----QKIRHDSTAWNAS------GSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--- 551

Query: 470 VPGQKAYAYYYP-----------PSNPIYQ 488
           +P  +                      I++
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFE 581

>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 20/143 (13%)

Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
           + IE P E   +    Y             ++    L+   GG TS    +  +      
Sbjct: 136 KSIEVPFEG--ELLPGYAIIS--------EDKAQDTLIVVGGGDTS-REDLFYMLGYSGW 184

Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
              +  + V+     G G+   + L                + ++   +A  +++ I G 
Sbjct: 185 EHDYNVLMVDL---PGQGKNPNQGLHFEVDARAA------ISAILDWYQAPTEKIAIAGF 235

Query: 582 SAGGYTTLAALAFRDTFKAGASL 604
           S GGY T  A+      KA  + 
Sbjct: 236 SGGGYFTAQAVEKDKRIKAWIAS 258

>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391

 Score = 48.0 bits (113), Expect = 5e-06
 Identities = 22/179 (12%), Positives = 37/179 (20%), Gaps = 39/179 (21%)

Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-GPTSE------------ 508
           E  EF    P   +      P +       +   P ++   G G T E            
Sbjct: 88  EKWEFYPF-PKSVSTFLVLKPEHL------KGAVPGVLCIPGSGRTKEGLVGEPGICDKL 140

Query: 509 ---ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE---------------RLLGR- 549
                             G+  V V+   +                          LG  
Sbjct: 141 TEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWS 200

Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVS 608
           W             ++       + R+ I+G S G    +          A      + 
Sbjct: 201 WLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDKDIYAFVYNDFLC 259

>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 24/166 (14%), Positives = 45/166 (27%), Gaps = 20/166 (12%)

Query: 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 520
              +     V   K       P+             +++ +HG  +S      +   +Y 
Sbjct: 12  EYAVSVS--VGEVKLKGNLVIPNGA---------TGIVLFAHGSGSSR----YSPRNRYV 56

Query: 521 TSR----GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576
                  G A + ++         + R R L     +  +       +L  +      ++
Sbjct: 57  AEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKV 116

Query: 577 CITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELWSISC 622
              G S GG   L A A R          G   P +    L  +  
Sbjct: 117 GYFGASTGGGAALVAAAERPETVQAVVSRGG-RPDLAPSALPHVKA 161

>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 20/179 (11%), Positives = 40/179 (22%), Gaps = 39/179 (21%)

Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG----------------GP 505
           E  EF    P   +      P N        +  P ++   G                  
Sbjct: 93  EKWEFYPL-PKCVSTFLVLIPDNI------NKPVPAILCIPGSGGNKEGLAGEPGIAPKL 145

Query: 506 TSEARGILNLSIQYWTSRGWAFVDVNYGG------------STGYGREFRER---LLGR- 549
               +         +   G+  V V+                + Y  +   R    LG  
Sbjct: 146 NDRYKDPKLTQALNFVKEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWS 205

Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVS 608
           +             ++       + R+ ++G S G    +       +  A      + 
Sbjct: 206 YLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSIYAFVYNDFLC 264

>3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} Length = 275

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 33/133 (24%)

Query: 486 IYQASPEEKPPLLVKSHGG------PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539
           I +A  +    ++V  HGG          +   +++      +  +  + ++Y       
Sbjct: 20  IIKAKNQPTKGVIVYIHGGGLMFGKANDLSPQYIDIL-----TEHYDLIQLSY------- 67

Query: 540 REFRERLLGRW---GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFR 595
                RLL       I++  D  +    +    +     +   G S+G Y  L+ L A  
Sbjct: 68  -----RLLPEVSLDCIIE--DVYASFDAIQS--QYSNCPIFTFGRSSGAY--LSLLIARD 116

Query: 596 DTFKAGASLYGVS 608
                    YG S
Sbjct: 117 RDIDGVIDFYGYS 129

>2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 30/163 (18%), Positives = 49/163 (30%), Gaps = 18/163 (11%)

Query: 446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-G 504
           +   D     S       + F     G    A  Y P N        ++ P +V     G
Sbjct: 53  TQEWDKTFPLSAKVEHRKVTFANR-YGITLAADLYLPKNR-----GGDRLPAIVIGGPFG 106

Query: 505 PTSEARGILNLSIQYWTSRGWAFVDVNY---GGSTGYGREFRERLLGRWGIVDVNDCCSC 561
              E      L  Q    RG+  +  +    G S G  R            ++  D  + 
Sbjct: 107 AVKEQS--SGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVA------SPDINTEDFSAA 158

Query: 562 ATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASL 604
             F+    + + +R+ + G    G   L A+A     KA  + 
Sbjct: 159 VDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTS 201

>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A Length = 259

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 25/169 (14%)

Query: 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG 524
            F  EV G+     Y+ P+             L++  HGG T +    +    +    RG
Sbjct: 33  GFSLEVDGRTVPGVYWSPAEG-------SSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRG 85

Query: 525 WA--FVDVNYGGSTGYGREFRERLLGRWGIV-------------DVNDCCSCATFLVGSG 569
            +   +D    G     +  RE                       + D  +   F+    
Sbjct: 86  ISAMAIDGPGHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAEE 145

Query: 570 KADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELW 618
                     G S G    L   A     K  A L  + +  +  E+L 
Sbjct: 146 GPR--PTGWWGLSMGTMMGLPVTASDKRIKV-ALLGLMGVEGVNGEDLV 191

>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} Length = 258

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 15/141 (10%)

Query: 479 YYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538
           Y P            + P+++  +G           L + +W S G+           G 
Sbjct: 37  YRPRDLG----QGGVRHPVILWGNGTGAG-PSTYAGL-LSHWASHGFVVAAAETSN-AGT 89

Query: 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTF 598
           GRE    L       D     +   +   SGK +  R+  +G S GG  ++ A       
Sbjct: 90  GREMLACL-------DYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMA-GQDTRV 141

Query: 599 KAGASLYGVSIPVIISEELWS 619
           +  A +   ++ +        
Sbjct: 142 RTTAPIQPYTLGLGHDSASQR 162

>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 29/138 (21%), Positives = 43/138 (31%), Gaps = 16/138 (11%)

Query: 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 529
             G      YYP  N  Y          +  S G   ++   I  L  +   S G+  + 
Sbjct: 79  ADGFGGGTIYYPRENNTY--------GAIAISPGYTGTQ-SSIAWLG-ERIASHGFVVIA 128

Query: 530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 589
           ++   +     + R R L     +D               + D  RL + G S GG  TL
Sbjct: 129 IDTNTTLDQP-DSRARQLNA--ALDY---MLTDASSAVRNRIDASRLAVMGHSMGGGGTL 182

Query: 590 AALAFRDTFKAGASLYGV 607
              + R   KA   L   
Sbjct: 183 RLASQRPDLKAAIPLTPW 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	623
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	100.0
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	100.0
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	100.0
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	100.0
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	100.0
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	100.0
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	100.0
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	100.0
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	100.0
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	100.0
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	100.0
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	100.0
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	100.0
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.79
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.69
3iii_A	560	COCE/NOND family hydrolase; structural genomics, c	99.68
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.67
3nuz_A	398	Putative acetyl xylan esterase; structural genomic	99.67
4ao6_A	259	Esterase; hydrolase, thermo label; 1.60A {Unidenti	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.66
1mpx_A	615	Alpha-amino acid ester hydrolase; alpha/beta hydro	99.64
2b9v_A	652	Alpha-amino acid ester hydrolase; catalytic triad,	99.64
3g8y_A	391	SUSD/RAGB-associated esterase-like protein; struct	99.63
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.61
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.61
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.61
2jbw_A	386	Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
1vlq_A	337	Acetyl xylan esterase; TM0077, structural genomics	99.58
3i2k_A	587	Cocaine esterase; alpha/beta hydrolase, hydrolase;	99.56
3doh_A	380	Esterase; alpha-beta hydrolase, beta sheet; 2.60A	99.56
2o2g_A	223	Dienelactone hydrolase; YP_324580.1, structural ge	99.56
3trd_A	208	Alpha/beta hydrolase; cellular processes; 1.50A {C	99.56
3ga7_A	326	Acetyl esterase; phosphoserine, IDP00896, hydrolas	99.56
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.55
3fcy_A	346	Xylan esterase 1; alpha/beta hydrolase, carbohydra	99.55
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.55
3f67_A	241	Putative dienelactone hydrolase; alpha-beta-alpha	99.54
2wir_A	313	Pesta, alpha/beta hydrolase fold-3 domain protein;	99.52
2wtm_A	251	EST1E; hydrolase; 1.60A {Clostridium proteoclastic	99.52
2fuk_A	220	XC6422 protein; A/B hydrolase, structural genomics	99.52
1l7a_A	318	Cephalosporin C deacetylase; structural genomics,	99.52
3fcx_A	282	FGH, esterase D, S-formylglutathione hydrolase; re	99.52
3fak_A	322	Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc	99.51
3ebl_A	365	Gibberellin receptor GID1; alpha/beta hydrolase, l	99.51
3hxk_A	276	Sugar hydrolase; alpha-beta protein., structural g	99.51
2hm7_A	310	Carboxylesterase; alpha/beta hydrolase fold, hydro	99.51
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.5
3k2i_A	422	Acyl-coenzyme A thioesterase 4; alpha/beta hydrola	99.5
3ain_A	323	303AA long hypothetical esterase; carboxylesterase	99.49
3hlk_A	446	Acyl-coenzyme A thioesterase 2, mitochondrial; alp	99.49
2i3d_A	249	AGR_C_3351P, hypothetical protein ATU1826; structu	99.49
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.49
2hdw_A	367	Hypothetical protein PA2218; alpha/beta hydrolase	99.49
3qh4_A	317	Esterase LIPW; structural genomics, ssgcid, seattl	99.48
1lns_A	763	X-prolyl dipeptidyl aminopetidase; alpha beta hydr	99.48
3bjr_A	283	Putative carboxylesterase; structural genomics, jo	99.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.48
3pfb_A	270	Cinnamoyl esterase; alpha/beta hydrolase fold, hyd	99.48
2c7b_A	311	Carboxylesterase, ESTE1; carboxyesterase, thermoph	99.47
3bxp_A	277	Putative lipase/esterase; putative carboxylesteras	99.47
4e15_A	303	Kynurenine formamidase; alpha/beta hydrolase fold,	99.47
3h04_A	275	Uncharacterized protein; protein with unknown func	99.46
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.46
2o7r_A	338	CXE carboxylesterase; alpha/beta hydrolase; 1.40A	99.46
1jkm_A	361	Brefeldin A esterase; serine hydrolase, degradatio	99.46
2zsh_A	351	Probable gibberellin receptor GID1L1; plant hormon	99.46
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.45
1lzl_A	323	Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod	99.45
1zi8_A	236	Carboxymethylenebutenolidase; alpha and beta prote	99.44
3mve_A	415	FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/	99.44
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.44
3ksr_A	290	Putative serine hydrolase; catalytic triad, struct	99.44
1jjf_A	268	Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x	99.44
2pbl_A	262	Putative esterase/lipase/thioesterase; alpha/beta-	99.44
3hju_A	342	Monoglyceride lipase; alpha/beta hydrolase, hydrol	99.41
1jji_A	311	Carboxylesterase; alpha-beta hydrolase fold, hydro	99.41
1gkl_A	297	Endo-1,4-beta-xylanase Y; hydrolase, esterase fami	99.41
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.4
4ezi_A	377	Uncharacterized protein; alpha-beta hydrolases fol	99.4
2qm0_A	275	BES; alpha-beta structure, structural genomics, PS	99.39
3e4d_A	278	Esterase D; S-formylglutathione hydrolase, hydrola	99.39
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.38
3d0k_A	304	Putative poly(3-hydroxybutyrate) depolymerase LPQ;	99.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.38
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.37
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.37
3h2g_A	397	Esterase; xanthomonas oryzae PV. oryzae, cell WALL	99.37
3pe6_A	303	Monoglyceride lipase; alpha-beta hydrolase fold, 2	99.37
1r88_A	280	MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP	99.35
2uz0_A	263	Esterase, tributyrin esterase; alpha/beta hydrolas	99.34
1tht_A	305	Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.	99.34
3ls2_A	280	S-formylglutathione hydrolase; psychrophilic organ	99.34
3i6y_A	280	Esterase APC40077; lipase, structural genomics, PS	99.34
3fnb_A	405	Acylaminoacyl peptidase SMU_737; alpha-beta-alpha	99.34
3k6k_A	322	Esterase/lipase; alpha/beta hydrolase fold; 2.20A	99.34
3d59_A	383	Platelet-activating factor acetylhydrolase; secret	99.34
1vkh_A	273	Putative serine hydrolase; structural genomics, jo	99.34
3vis_A	306	Esterase; alpha/beta-hydrolase fold, polyethylene	99.33
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.33
4b6g_A	283	Putative esterase; hydrolase, formaldehyde detoxif	99.33
3llc_A	270	Putative hydrolase; structural genomics, joint cen	99.32
3bdi_A	207	Uncharacterized protein TA0194; NP_393672.1, predi	99.32
3d7r_A	326	Esterase; alpha/beta fold, hydrolase; 2.01A {Staph	99.32
4fbl_A	281	LIPS lipolytic enzyme; thermostable, structural ge	99.31
1jfr_A	262	Lipase; serine hydrolase; 1.90A {Streptomyces exfo	99.3
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.29
1sfr_A	304	Antigen 85-A; alpha/beta hydrolase, structural gen	99.29
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.29
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.29
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.28
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.28
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.27
1k8q_A	377	Triacylglycerol lipase, gastric; APHA beta hydrola	99.27
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.26
1qe3_A	489	PNB esterase, para-nitrobenzyl esterase; alpha-bet	99.26
4f0j_A	315	Probable hydrolytic enzyme; alpha/beta hydrolase f	99.25
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.24
4h0c_A	210	Phospholipase/carboxylesterase; PSI-biology, midwe	99.23
3rm3_A	270	MGLP, thermostable monoacylglycerol lipase; alpha/	99.23
2qru_A	274	Uncharacterized protein; alpha/beta-hydrolase, str	99.23
3dkr_A	251	Esterase D; alpha beta hydrolase, mechanism, catal	99.23
2h7c_A	542	Liver carboxylesterase 1; enzyme, cholesteryl este	99.22
3qit_A	286	CURM TE, polyketide synthase; thioesterase, alpha/	99.21
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.19
3og9_A	209	Protein YAHD A copper inducible hydrolase; alpha/b	99.19
3pic_A	375	CIP2; alpha/beta hydrolase fold, glucuronoyl ester	99.19
1imj_A	210	CIB, CCG1-interacting factor B; alpha/beta hydrola	99.18
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	99.17
1fj2_A	232	Protein (acyl protein thioesterase 1); alpha/beta	99.17
3b5e_A	223	MLL8374 protein; NP_108484.1, carboxylesterase, st	99.17
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.16
4g4g_A	433	4-O-methyl-glucuronoyl methylesterase; alpha/beta	99.15
2qjw_A	176	Uncharacterized protein XCC1541; putative hydrolas	99.13
2gzs_A	278	IROE protein; enterobactin, salmochelin, DFP, hydr	99.13
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.13
2ha2_A	543	ACHE, acetylcholinesterase; hydrolase fold, serine	99.12
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.12
1dqz_A	280	85C, protein (antigen 85-C); fibronectin, structur	99.12
2ogt_A	498	Thermostable carboxylesterase EST50; alpha/beta hy	99.12
2h1i_A	226	Carboxylesterase; structural genomics, PSI-2, prot	99.12
1ukc_A	522	ESTA, esterase; fungi, A/B hydrolase fold, acetylc	99.11
1zoi_A	276	Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo	99.11
1a88_A	275	Chloroperoxidase L; haloperoxidase, oxidoreductase	99.11
3sty_A	267	Methylketone synthase 1; alpha/beta hydrolase, dec	99.1
2fx5_A	258	Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse	99.1
2y6u_A	398	Peroxisomal membrane protein LPX1; hydrolase, puta	99.1
1auo_A	218	Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl	99.09
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.09
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.08
1a8s_A	273	Chloroperoxidase F; haloperoxidase, oxidoreductase	99.08
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.08
1q0r_A	298	RDMC, aclacinomycin methylesterase; anthracycline,	99.08
1ufo_A	238	Hypothetical protein TT1662; alpha-beta fold, hydr	99.07
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.07
2fj0_A	551	JuvenIle hormone esterase; manduca sexta, alpha-be	99.06
2ocg_A	254	Valacyclovir hydrolase; alpha beta hydrolase fold;	99.05
2r11_A	306	Carboxylesterase NP; 2632844, putative hydrolase,	99.05
1a8q_A	274	Bromoperoxidase A1; haloperoxidase, oxidoreductase	99.04
2yys_A	286	Proline iminopeptidase-related protein; TTHA1809,	99.04
4dnp_A	269	DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu	99.04
2r8b_A	251	AGR_C_4453P, uncharacterized protein ATU2452; APC6	99.04
3cn9_A	226	Carboxylesterase; alpha/beta hydrolase fold super-	99.03
1brt_A	277	Bromoperoxidase A2; haloperoxidase, oxidoreductase	99.02
3dqz_A	258	Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl	99.02
3ia2_A	271	Arylesterase; alpha-beta hydrolase fold, transitio	99.02
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	99.02
1hkh_A	279	Gamma lactamase; hydrolase, alpha/beta hydrolase,	99.02
3r0v_A	262	Alpha/beta hydrolase fold protein; structural geno	99.02
1mtz_A	293	Proline iminopeptidase; alpha-beta hydrolase, CAP	99.02
3u1t_A	309	DMMA haloalkane dehalogenase; alpha/beta-hydrolase	99.01
2e3j_A	356	Epoxide hydrolase EPHB; epoxide hydrolase B, struc	99.01
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.01
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.01
3oos_A	278	Alpha/beta hydrolase family protein; APC67239.0, p	99.01
1thg_A	544	Lipase; hydrolase(carboxylic esterase); HET: NAG N	99.01
3r40_A	306	Fluoroacetate dehalogenase; FACD, defluorinase, al	99.0
3kxp_A	314	Alpha-(N-acetylaminomethylene)succinic acid hydrol	99.0
4fhz_A	285	Phospholipase/carboxylesterase; alpha/beta hydrola	99.0
2wfl_A	264	Polyneuridine-aldehyde esterase; alkaloid metaboli	99.0
3bwx_A	285	Alpha/beta hydrolase; YP_496220.1, joint center fo	99.0
1llf_A	534	Lipase 3; candida cylindracea cholesterol esterase	99.0
3om8_A	266	Probable hydrolase; structural genomics, PSI-2, pr	98.99
1p0i_A	529	Cholinesterase; serine hydrolase, butyrate, hydrol	98.99
3nwo_A	330	PIP, proline iminopeptidase; structural genomics,	98.99
1dx4_A	585	ACHE, acetylcholinesterase; hydrolase, serine este	98.99
3qvm_A	282	OLEI00960; structural genomics, PSI-biology, midwe	98.99
3ibt_A	264	1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO,	98.98
3u0v_A	239	Lysophospholipase-like protein 1; alpha, beta hydr	98.98
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.98
3e0x_A	245	Lipase-esterase related protein; APC60309, clostri	98.98
2pl5_A	366	Homoserine O-acetyltransferase; alpha/beta hydrola	98.98
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.97
2b61_A	377	Homoserine O-acetyltransferase; acyl-enzyme, aspar	98.97
3g9x_A	299	Haloalkane dehalogenase; alpha/beta hydrolase, hel	98.96
2cjp_A	328	Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu	98.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.96
1ea5_A	537	ACHE, acetylcholinesterase; hydrolase, serine hydr	98.96
4g9e_A	279	AHL-lactonase, alpha/beta hydrolase fold protein;	98.96
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.96
2xua_A	266	PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate	98.96
1wm1_A	317	Proline iminopeptidase; complex with inhibitor, hy	98.95
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.95
2bce_A	579	Cholesterol esterase; hydrolase, serine esterase,	98.95
3kda_A	301	CFTR inhibitory factor (CIF); alpha/beta hydrolase	98.95
1uxo_A	192	YDEN protein; hydrolase, A/B hydrolase, esterase,	98.95
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.95
1r3d_A	264	Conserved hypothetical protein VC1974; structural	98.95
2xt0_A	297	Haloalkane dehalogenase; hydrolase, alpha-beta hyd	98.95
1azw_A	313	Proline iminopeptidase; aminopeptidase, serine pro	98.94
3vdx_A	456	Designed 16NM tetrahedral protein CAGE containing	98.94
2wue_A	291	2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas	98.94
1xkl_A	273	SABP2, salicylic acid-binding protein 2; alpha-bet	98.94
2rau_A	354	Putative esterase; NP_343859.1, putative lipase, s	98.93
1tqh_A	247	Carboxylesterase precursor; tetrahedral intermedia	98.93
1isp_A	181	Lipase; alpha/beta hydrolase fold, hydrolase; 1.30	98.93
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.93
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.92
3l80_A	292	Putative uncharacterized protein SMU.1393C; alpha/	98.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.92
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.92
1b6g_A	310	Haloalkane dehalogenase; hydrolase, alpha/beta-hyd	98.91
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.91
1c4x_A	285	BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di	98.91
2qs9_A	194	Retinoblastoma-binding protein 9; B5T overexpresse	98.91
3c6x_A	257	Hydroxynitrilase; atomic resolution, hydroxynitril	98.9
1iup_A	282	META-cleavage product hydrolase; aromatic compound	98.9
3hss_A	293	Putative bromoperoxidase; alpha beta hydrolase, ox	98.89
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.89
3i1i_A	377	Homoserine O-acetyltransferase; structural genomic	98.89
1qlw_A	328	Esterase; anisotropic refinement, atomic resolutio	98.89
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.89
2xmz_A	269	Hydrolase, alpha/beta hydrolase fold family; menaq	98.89
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.89
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.88
1u2e_A	289	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase	98.88
2vat_A	444	Acetyl-COA--deacetylcephalosporin C acetyltransfer	98.87
2puj_A	286	2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola;	98.87
1pja_A	302	Palmitoyl-protein thioesterase 2 precursor; hydrol	98.87
3fsg_A	272	Alpha/beta superfamily hydrolase; PF00561, MCSG, P	98.87
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.86
3fob_A	281	Bromoperoxidase; structural genomics, IDP00046, ba	98.85
2q0x_A	335	Protein DUF1749, uncharacterized protein; alpha/be	98.85
3v48_A	268	Aminohydrolase, putative aminoacrylate hydrolase R	98.85
2qvb_A	297	Haloalkane dehalogenase 3; RV2579, alpha-beta hydr	98.85
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.85
2psd_A	318	Renilla-luciferin 2-monooxygenase; alpha/beta-hydr	98.84
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.84
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.84
1wom_A	271	RSBQ, sigma factor SIGB regulation protein RSBQ; a	98.84
1ehy_A	294	Protein (soluble epoxide hydrolase); alpha/beta hy	98.83
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.82
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.82
1mj5_A	302	1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase;	98.82
4fle_A	202	Esterase; structural genomics, PSI-biology, northe	98.81
4i19_A	388	Epoxide hydrolase; structural genomics, PSI-biolog	98.81
3bix_A	574	Neuroligin-1, neuroligin I; esterase domain, alpha	98.81
1j1i_A	296	META cleavage compound hydrolase; carbazole degrad	98.8
3bf7_A	255	Esterase YBFF; thioesterase, helical CAP, hydrolas	98.8
3gff_A	331	IROE-like serine hydrolase; NP_718593.1, structura	98.79
3afi_E	316	Haloalkane dehalogenase; A/B-hydrolase, hydrolase;	98.79
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.78
2wj6_A	276	1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid	98.78
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.78
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.78
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.78
3guu_A	462	Lipase A; protein structure, hydrolase; HET: 1PE;	98.78
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.78
3p2m_A	330	Possible hydrolase; alpha/beta hydrolase superfami	98.78
1tca_A	317	Lipase; hydrolase(carboxylic esterase); HET: NAG;	98.77
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.77
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.77
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.76
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.74
3c5v_A	316	PME-1, protein phosphatase methylesterase 1; demet	98.74
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.74
1ex9_A	285	Lactonizing lipase; alpha-beta hydrolase fold, pho	98.73
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.73
3fla_A	267	RIFR; alpha-beta hydrolase thioesterase, hydrolase	98.73
1m33_A	258	BIOH protein; alpha-betta-alpha sandwich, structur	98.73
1bu8_A	452	Protein (pancreatic lipase related protein 2); hyd	98.73
3b12_A	304	Fluoroacetate dehalogenase; dehalogease, hydrolase	98.19
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.72
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.72
1gpl_A	432	RP2 lipase; serine esterase, hydrolase, lipid degr	98.72
1ys1_X	320	Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h	98.72
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.7
2qmq_A	286	Protein NDRG2, protein NDR2; alpha/beta-hydrolases	98.7
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.69
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.69
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.69
3qyj_A	291	ALR0039 protein; alpha/beta fold, hydrolase; 1.78A	98.68
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.68
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.68
1w52_X	452	Pancreatic lipase related protein 2; detergent, cl	98.68
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.67
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.67
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.67
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.67
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.66
3icv_A	316	Lipase B, CALB; circular permutation, cleavage on	98.66
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.66
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.66
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.65
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.65
3g02_A	408	Epoxide hydrolase; alpha/beta hydrolase fold, enan	98.64
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.64
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.64
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.63
2x5x_A	342	PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE	98.63
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.63
3qmv_A	280	Thioesterase, REDJ; alpha/beta hydrolase fold, hyd	98.62
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.61
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.61
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.6
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.6
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.6
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.6
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.6
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.6
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.59
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.57
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.56
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.55
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.55
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.55
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.55
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.54
1ycd_A	243	Hypothetical 27.3 kDa protein in AAP1-SMF2 interge	98.54
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.54
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.53
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.53
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.53
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.52
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.52
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.52
4f21_A	246	Carboxylesterase/phospholipase family protein; str	98.51
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.51
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.5
1rp1_A	450	Pancreatic lipase related protein 1; hydrolase, li	98.5
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.5
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.5
1hpl_A	449	Lipase; hydrolase(carboxylic esterase); 2.30A {Equ	98.5
4fol_A	299	FGH, S-formylglutathione hydrolase; D-type esteras	98.49
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.49
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.48
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.47
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.47
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.46
3n2z_B	446	Lysosomal Pro-X carboxypeptidase; alpha/beta hydro	98.46
2zyr_A	484	Lipase, putative; fatty acid, hydrolase; HET: 1PE;	98.45
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.45
3bdv_A	191	Uncharacterized protein DUF1234; DUF1234 family pr	98.44
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.43
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.41
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.4
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.4
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.4
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.4
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.39
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.38
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.38
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.37
1ei9_A	279	Palmitoyl protein thioesterase 1; alpha/beta hydro	98.37
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.37
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.36
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.35
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.35
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.34
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.34
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.34
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.33
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.33
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.33
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.33
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.32
2pm7_B	297	Protein transport protein SEC13, protein transport	98.32
2pm7_B	297	Protein transport protein SEC13, protein transport	98.32
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.32
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.32
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.31
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.31
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.31
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.3
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.3
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.3
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.29
3fle_A	249	SE_1780 protein; structural genomics, APC61035.1,	98.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.28
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.25
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.25
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.24
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.24
2dst_A	131	Hypothetical protein TTHA1544; conserved hypotheti	98.24
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.22
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.22
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.21
3lcr_A	319	Tautomycetin biosynthetic PKS; alpha-beta hydrolas	98.21
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.2
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.19
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.19
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.19
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.18
3ds8_A	254	LIN2722 protein; unkonwn function, structural geno	98.18
1kez_A	300	Erythronolide synthase; polyketide synthase, modul	98.17
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.17
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.17
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.16
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.16
3lp5_A	250	Putative cell surface hydrolase; structural genom	98.15
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.14
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.13
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.12
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.1
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.1
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.1
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.09
3ils_A	265	PKS, aflatoxin biosynthesis polyketide synthase; A	98.09
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.08
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.08
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.08
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.07
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.06
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.06
2hih_A	431	Lipase 46 kDa form; A1 phospholipase, phospholipid	98.04
3jro_A	753	Fusion protein of protein transport protein SEC13	98.04
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	98.02
2dsn_A	387	Thermostable lipase; T1 lipase, hydrolase; 1.50A {	98.01
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.0
2k2q_B	242	Surfactin synthetase thioesterase subunit; A/B-hyd	97.99
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.99
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.89
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.88
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.87
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.86
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.86
3jro_A	753	Fusion protein of protein transport protein SEC13	97.86
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.83
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.81
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.79
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.79
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.79
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.78
3tej_A	329	Enterobactin synthase component F; nonribosomal pe	97.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.75
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.74
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.72
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.7
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.69
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.68
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.66
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.63
1whs_A	255	Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T	97.6
2cb9_A	244	Fengycin synthetase; thioesterase, non-ribosomal p	97.59
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.56
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.55
1jmk_C	230	SRFTE, surfactin synthetase; thioesterase, non-rib	97.54
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.49
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.49
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.46
3tjm_A	283	Fatty acid synthase; thioesterase domain, fatty ac	97.46
1ivy_A	452	Human protective protein; carboxypeptidase, serine	97.44
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.44
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.36
2hfk_A	319	Pikromycin, type I polyketide synthase pikaiv; alp	97.34
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.34
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.33
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.28
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.27
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.26
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	97.23
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.21
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.2
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	97.17

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=100.00  E-value=2.8e-59  Score=529.39  Aligned_cols=527  Identities=32%  Similarity=0.598  Sum_probs=437.3

Q ss_pred             cccCCCCCCCcCCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCC
Q 006979           68 ITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG  147 (623)
Q Consensus        68 ~~~~~g~w~s~~t~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~  147 (623)
                      +++|||+|+|||+++.+......+..+.++ ++.++|+..++.++++..||....+  ++.+.++....++++++++|++
T Consensus         3 ~~~~~g~w~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~   79 (662)
T 3azo_A            3 STAPYGAWQSPIDAALVASRSGRPACVGAV-GDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSG   79 (662)
T ss_dssp             EECCTTCCCCSCCHHHHHHTCSCCEEEEEE-TTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCC
T ss_pred             ccCCCcCCCCCCCHHHHhhcCCccceeEEc-CCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCC
Confidence            689999999999999999988889999999 8899999998888899999987433  5678888877788899999999


Q ss_pred             ceEEEe--CC--E-EEEEeCCCCcEEEEeCC--C-CCCCceecCCCCC-CCCeeecceeeCCCCCEEEEEEeccCC-CCC
Q 006979          148 GAFRIF--GD--T-VIFSNYKDQRLYKHSID--S-KDSSPLPITPDYG-EPLVSYADGIFDPRFNRYVTVREDRRQ-DAL  217 (623)
Q Consensus       148 ~~~~~s--~d--~-l~f~~~~~~~l~~~d~~--~-g~~~~~~Lt~~~~-~~~~~~~d~~~sPdG~~l~~v~~~~~~-~~~  217 (623)
                      ..+.++  +|  . |+|+...+.+||+++++  + +  ..++|+.... ....++.+++|||||++|+++++++.. .+.
T Consensus        80 ~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~  157 (662)
T 3azo_A           80 FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA--VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS  157 (662)
T ss_dssp             CCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC--CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred             ccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC--CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence            888666  44  7 89998777789999998  5 6  6888887310 014577889999999999999876421 112


Q ss_pred             CceeEEEEEEcCC------CCcccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCcee-ee
Q 006979          218 NSTTEIVAIALNG------QNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KR  289 (623)
Q Consensus       218 ~~~~~L~~idl~~------g~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~-~~  289 (623)
                      ....+||++|+++      ++   .++|+ .+..++..|+|||||++|+|.+++++.++|...+||++|+++.+.+. ..
T Consensus       158 ~~~~~i~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~  234 (662)
T 3azo_A          158 DVRRFLAAVPLDGSAAADRSA---VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR  234 (662)
T ss_dssp             CEEEEEEEEETTSTTTTCGGG---SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred             CceeEEEEEECCCCccccCCc---eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence            2457899999998      66   77888 77778888999999999999999999999999999999998433111 23


Q ss_pred             EEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCC
Q 006979          290 VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKN  369 (623)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~  369 (623)
                      .+..+..    ..+..+.|+|||+++|.++. .+..+||++|+++++.+.++.....+..+.|+++...+.+.    +++
T Consensus       235 ~l~~~~~----~~~~~~~~spdg~l~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~----~~~  305 (662)
T 3azo_A          235 TLLGGPE----EAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL----ANG  305 (662)
T ss_dssp             EEEEETT----BCEEEEEECTTSCEEEEECT-TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC----TTS
T ss_pred             EeCCCCC----ceEcceEECCCCeEEEEECC-CCCeEEEEEECCCCceeecccccccccCccccccCceEeEe----CCC
Confidence            3333323    45678999999998888887 67889999999888888888777777789999888888887    556


Q ss_pred             EEEEEEEECCeEEEEEEeCCCCceeecccCCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccC
Q 006979          370 LIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSS  448 (623)
Q Consensus       370 ~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~  448 (623)
                      .++++..+ +..+||++|++++++++|+.+...+..+ +.+++.++++.++...+..||++++++++.++|+      ..
T Consensus       306 ~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~------~~  378 (662)
T 3azo_A          306 LIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG------AR  378 (662)
T ss_dssp             CEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE------SC
T ss_pred             EEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee------cC
Confidence            67777777 9999999999999999998776667777 8889999999999999999999999998865543      22


Q ss_pred             CCCccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEE
Q 006979          449 PDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFV  528 (623)
Q Consensus       449 ~~~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~  528 (623)
                      ....+++..++.++.+.++.. +|..++++++.|++.++..++++++|+||++||++.......|...++.|+++||+|+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~-dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~  457 (662)
T 3azo_A          379 HTDPVDPAYYPEPQIRTFTAP-DGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVA  457 (662)
T ss_dssp             CCCSSCGGGSCCCEEEEEECT-TSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEE
T ss_pred             CcccCCccccCcceEEEEEcC-CCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEE
Confidence            223456667788999999987 8999999999998732222236788999999999877766788889999999999999


Q ss_pred             EECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCC
Q 006979          529 DVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVS  608 (623)
Q Consensus       529 ~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~  608 (623)
                      .+|+||++++|+++.+...+.++..+++|+.+++++|++++.+|++||+|+|+|+||++++.++.+|++|+|+|+.+|+.
T Consensus       458 ~~d~rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~v~~~~~~  537 (662)
T 3azo_A          458 DVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVSTDVYACGTVLYPVL  537 (662)
T ss_dssp             EEECTTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCCCCSEEEEESCCC
T ss_pred             EECCCCCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhCcCceEEEEecCCcc
Confidence            99999999999999988888898889999999999999999999999999999999999999886699999999999999


Q ss_pred             CHHHhhh-hccc
Q 006979          609 IPVIISE-ELWS  619 (623)
Q Consensus       609 d~~~~~~-~~~~  619 (623)
                      |+..+.. .+++
T Consensus       538 ~~~~~~~~~~~~  549 (662)
T 3azo_A          538 DLLGWADGGTHD  549 (662)
T ss_dssp             CHHHHHTTCSCG
T ss_pred             CHHHHhcccccc
Confidence            9987765 3443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=100.00  E-value=2.4e-43  Score=403.10  Aligned_cols=464  Identities=13%  Similarity=0.067  Sum_probs=338.6

Q ss_pred             CCcEEEEeecCCCCCceEEEEcCCC--CCC--CCcccCCCCCccceeeeec-CCceEEEe-CC--EEEEEeCCCC----c
Q 006979           99 HGRLIWLESRPTEAGRGVLVKEPAK--AGD--EPSDITPKEYAVRTTAQEY-GGGAFRIF-GD--TVIFSNYKDQ----R  166 (623)
Q Consensus        99 ~~~~~~l~~~~~e~g~~~l~~~~~~--~gg--~~~~l~p~~~~~r~~~~~~-g~~~~~~s-~d--~l~f~~~~~~----~  166 (623)
                      |+.+||....+. +.+..|++.+..  .++  ..+.+++ . |.....++| ..+.+.++ +|  .|+|+....|    +
T Consensus       126 g~~~yy~~~~~g-~~~~vl~r~~~~~~~~~~~~~~vlld-~-n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~  202 (751)
T 2xe4_A          126 GKYRYYTREVKG-KPYKIYCRVFTDKEPGDVAAEEVIID-V-NQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYT  202 (751)
T ss_dssp             TTEEEEEEECTT-CCSCEEEEEETTSCTTCTTTCEEEEE-H-HHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEE
T ss_pred             CCEEEEEEECCC-CceeEEEEEcCCCCCCCCcCCEEEec-h-hHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEE
Confidence            889999876543 235667777641  222  2333332 2 333333343 45677888 66  6888866543    4


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc--cCCC
Q 006979          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSD  244 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~--~~~~  244 (623)
                      ||++|+++|  .. .++..   -...+.++.|||||+.|+|++.+...    ...+||++++.++..+ .+.+.  .+..
T Consensus       203 l~v~dl~~g--~~-~l~~~---~~~~~~~~~WspDg~~l~y~~~d~~~----~~~~v~~~~lgt~~~~-~~lv~~~~~~~  271 (751)
T 2xe4_A          203 IEFKRISDP--SQ-TIADK---VSGTNGEIVWGPDHTSLFYVTKDETL----RENKVWRHVMGKLQSE-DVCLYEEHNPL  271 (751)
T ss_dssp             EEEEETTCT--TC-CCCCC---EEEECSCCEECSSTTEEEEEEECTTC----CEEEEEEEETTSCGGG-CEEEEECCCTT
T ss_pred             EEEEECCCC--CE-eCCcc---ccCceeeEEEecCCCEEEEEEECCCC----CCCEEEEEECCCCchh-cEEEEecCCCc
Confidence            999999875  11 23221   02235679999999999999875422    2368999999887521 12332  2335


Q ss_pred             cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeee--EEEcCCCCCccccCcCceeCCC---Cc-EEEEE
Q 006979          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--VCVAGFDPTIVESPTEPKWSSK---GE-LFFVT  318 (623)
Q Consensus       245 ~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ws~D---G~-l~~~~  318 (623)
                      +...+.|||||++|+|..++.     ...+||++|++++..  ..  +.+....       ..+.|++|   |+ ++|.+
T Consensus       272 ~~~~~~~SpDg~~l~~~~~~~-----~~~~l~~~d~~~~~~--~~~~~~l~~~~-------~~~~~s~~~~~g~~l~~~t  337 (751)
T 2xe4_A          272 FSAFMYKAADTNTLCIGSQSP-----ETAEVHLLDLRKGNA--HNTLEIVRPRE-------KGVRYDVQMHGTSHLVILT  337 (751)
T ss_dssp             CEEEEEECTTSSEEEEEEECS-----SCEEEEEEESSSCTT--CCCEEESSCCC-------TTCCEEEEEETTTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEecCC-----CCceEEEEECCCCCC--CceeEEeecCC-------CCceEEEeeeeCCEEEEEe
Confidence            677899999999999998654     367899999987521  22  3343322       13445554   66 99999


Q ss_pred             eCC-CCeeeEEEEecCC-CeEEE-EeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC-------
Q 006979          319 DRK-NGFWNLHKWIESN-NEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD-------  388 (623)
Q Consensus       319 ~~~-~g~~~L~~~d~~~-~~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~-------  388 (623)
                      +.. .++++|+++|+++ ++.+. |.++..+..-.       .+.+     .++.|++...++|..+|+++++       
T Consensus       338 ~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~-------~~~~-----~~~~lv~~~~~~g~~~l~~~dl~~~~~~~  405 (751)
T 2xe4_A          338 NEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFME-------SIAV-----RSNYLVVAGRRAGLTRIWTMMADSQDGVF  405 (751)
T ss_dssp             CTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEE-------EEEE-----CSSEEEEEEEETTEEEEEEEECCTTTSCC
T ss_pred             CCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEE-------EEEE-----ECCEEEEEEEeCCEEEEEEEecccccccc
Confidence            873 4678999999876 45555 55443222111       1222     5678999999999999999996       


Q ss_pred             CCCc-eeecccCCcc-eEee------eecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCCC-ccCCCCCC
Q 006979          389 FGHS-LSLLDIPFTD-IDNI------TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDT-LKYKSYFS  459 (623)
Q Consensus       389 ~~~~-~~~lt~~~~~-v~~~------~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~~-~~~~~~~~  459 (623)
                      ++++ .+.|+.+... +..+      +.+++.+++..++...|+.+|.+++++++.+.|+      ..... .+++..+ 
T Consensus       406 ~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~------~~~~~~~~~~~~~-  478 (751)
T 2xe4_A          406 KAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVK------VREVGGGFDAANY-  478 (751)
T ss_dssp             CTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEE------ECCCCTTCCGGGE-
T ss_pred             cCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEe------ccccccCCCccce-
Confidence            6677 7777655432 2334      2467889999999999999999999988765544      22111 2444444 


Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      .++.+.+++. ||..|+++++.|++  ++.  +++.|+||++|||+.....+.|....+.|+++||+|+.+|+||++++|
T Consensus       479 ~~~~~~~~s~-dG~~i~~~l~~p~~--~~~--~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~G  553 (751)
T 2xe4_A          479 KVERRFATAP-DQTKIPLSVVYHKD--LDM--SQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIRGGSELG  553 (751)
T ss_dssp             EEEEEEEECT-TCCEEEEEEEEETT--SCT--TSCCCEEEECCCCTTCCCCCCCCGGGHHHHTTTCEEEEECCTTSCTTC
T ss_pred             EEEEEEEECC-CCcEEEEEEEcCCC--CCC--CCCccEEEEECCCCCcCCCCcchHHHHHHHhCCcEEEEEeeCCCCCcC
Confidence            4789999998 99999999999987  222  567899999999988777778888889999999999999999999999


Q ss_pred             hhHHH-hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979          540 REFRE-RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       540 ~~~~~-~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~  614 (623)
                      +.|.+ .....++...++|++++++||++++++|++||+|+|+|+||+++++++ .+|++|+|+|+.+|+.|+..+.
T Consensus       554 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~~~d~~~~~  630 (751)
T 2xe4_A          554 RAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTM  630 (751)
T ss_dssp             THHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCHHHHH
T ss_pred             cchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCCcchHHhhh
Confidence            99998 777778888999999999999999999999999999999999999999 7799999999999999998764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=100.00  E-value=2.5e-42  Score=392.16  Aligned_cols=464  Identities=13%  Similarity=0.134  Sum_probs=343.3

Q ss_pred             CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCC-CCCccceeeeecCCceEEEeCC--EEEEEeCCCC----cEEEEe
Q 006979           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITP-KEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ----RLYKHS  171 (623)
Q Consensus        99 ~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p-~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~----~l~~~d  171 (623)
                      |+.+||....+. +.+..+||....  ++.+.+++ ......   +.+..+.+.+++|  .++|+....|    .|+++|
T Consensus        88 g~~~y~~~~~~~-~~~~~~~r~~~~--~~~~vllD~n~la~~---~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~d  161 (693)
T 3iuj_A           88 GRYHYFFKNDGL-QNQNVLWRQQEG--KPAEVFLDPNTLSPD---GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMD  161 (693)
T ss_dssp             TTEEEEEEECSS-CSSCEEEEECTT--SCCEEEECGGGGSTT---SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEE
T ss_pred             CCEEEEEEEcCC-CceeEEEEeCCC--CCcEEEEehhhccCC---CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEE
Confidence            888888876543 455678886543  23444443 222111   1223445677776  6888764443    599999


Q ss_pred             CCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCC----CCCCceeEEEEEEcCCCCcccceecccCC----
Q 006979          172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ----DALNSTTEIVAIALNGQNIQEPKVLVSGS----  243 (623)
Q Consensus       172 ~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~----~~~~~~~~L~~idl~~g~~~~~~~l~~~~----  243 (623)
                      +++|  +....+..    ...+..++|+ ||+.|+|++.+...    .......+||++++.++..+ .+.+....    
T Consensus       162 l~tg--~~~~~~~~----~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-~~~v~~~~~~~~  233 (693)
T 3iuj_A          162 VESK--QPLETPLK----DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED-DRLVFGAIPAQH  233 (693)
T ss_dssp             TTTC--SEEEEEEE----EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG-CEEEESCSGGGC
T ss_pred             CCCC--CCCccccC----CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc-ceEEEecCCCCC
Confidence            9988  54444321    2335788999 99999999876420    00123477999999876522 23444333    


Q ss_pred             CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCC
Q 006979          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN  322 (623)
Q Consensus       244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~  322 (623)
                      .+...+.|||||++|++......    ...+||++|++++.. ....+....+     ....+ |+++|+ ++|.++...
T Consensus       234 ~~~~~~~~SpDg~~l~~~~~~~~----~~~~i~~~d~~~~~~-~~~~l~~~~~-----~~~~~-~~~~g~~l~~~t~~~~  302 (693)
T 3iuj_A          234 HRYVGATVTEDDRFLLISAANST----SGNRLYVKDLSQENA-PLLTVQGDLD-----ADVSL-VDNKGSTLYLLTNRDA  302 (693)
T ss_dssp             CSEEEEEECTTSCEEEEEEESSS----SCCEEEEEETTSTTC-CCEEEECSSS-----SCEEE-EEEETTEEEEEECTTC
T ss_pred             eEEEEEEEcCCCCEEEEEEccCC----CCcEEEEEECCCCCC-ceEEEeCCCC-----ceEEE-EeccCCEEEEEECCCC
Confidence            35667899999999998875443    246899999976632 1233333322     12223 778877 888888744


Q ss_pred             CeeeEEEEecCCCeE---EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccC
Q 006979          323 GFWNLHKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP  399 (623)
Q Consensus       323 g~~~L~~~d~~~~~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~  399 (623)
                      ...+|+++|+++++.   +.++++.....  .|++            +++.|++...++|..+|++++++++..+.|+.+
T Consensus       303 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~------------~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p  368 (693)
T 3iuj_A          303 PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS------------GSGYLFAEYMVDATARVEQFDYEGKRVREVALP  368 (693)
T ss_dssp             TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE------------ETTEEEEEEEETTEEEEEEECTTSCEEEEECCS
T ss_pred             CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE------------ECCEEEEEEEECCeeEEEEEECCCCeeEEeecC
Confidence            467999999987654   67776533221  3332            788999999999999999999998888888765


Q ss_pred             Cc-ceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCCCccCCCCCCCcEEEEeecCCCCeEEE
Q 006979          400 FT-DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAY  476 (623)
Q Consensus       400 ~~-~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~dg~~i~  476 (623)
                      .. .+..+  +++++.+++..++..+|..||.+++++++.+.|+      ... ..+++..+ ..+.+.+++. +|..|+
T Consensus       369 ~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~------~~~-~~~~~~~~-~~~~~~~~~~-dg~~i~  439 (693)
T 3iuj_A          369 GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR------ASA-APFKPEDY-VSEQRFYQSK-DGTRVP  439 (693)
T ss_dssp             SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE------CCC-SSCCGGGE-EEEEEEEECT-TSCEEE
T ss_pred             CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE------eCC-CCcChhhC-eeEEEEEecC-CCcEEE
Confidence            43 34444  5678899999999999999999999888754443      222 23455444 6789999998 999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHH
Q 006979          477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN  556 (623)
Q Consensus       477 ~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~  556 (623)
                      ++++.|++.  ..  +++.|+||++|||++....+.|....+.|+++||+|+.+|+||++++|+.|.+.....++...++
T Consensus       440 ~~l~~p~~~--~~--~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~  515 (693)
T 3iuj_A          440 LIISYRKGL--KL--DGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFD  515 (693)
T ss_dssp             EEEEEESSC--CC--SSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHH
T ss_pred             EEEEecCCC--CC--CCCccEEEEECCCCCcCCCCccCHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcHH
Confidence            999999872  22  56789999999998887888888888999999999999999999999999999888888888899


Q ss_pred             HHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979          557 DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       557 D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~  614 (623)
                      |+.++++||++++.+|++||+|+|+|+||++++.++ .+|++|+|+|+.+|+.|+..+.
T Consensus       516 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~  574 (693)
T 3iuj_A          516 DFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYH  574 (693)
T ss_dssp             HHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGG
T ss_pred             HHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhc
Confidence            999999999999999999999999999999999999 7899999999999999987653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=100.00  E-value=7.4e-42  Score=389.83  Aligned_cols=470  Identities=13%  Similarity=0.115  Sum_probs=342.1

Q ss_pred             C-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCC-CCccceeeeecCCceEEEeCC--EEEEEeCCCC----cEEE
Q 006979           98 G-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-EYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ----RLYK  169 (623)
Q Consensus        98 ~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~-~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~----~l~~  169 (623)
                      | |+.+||+..... +.+..||+.+..+ ++.+.++.. .....   +.+....+.+++|  .|+|.....|    +|++
T Consensus        81 ~dG~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~lld~~~l~~~---~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v  155 (710)
T 2xdw_A           81 KKGKRYFYFYNTGL-QNQRVLYVQDSLE-GEARVFLDPNILSDD---GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKF  155 (710)
T ss_dssp             EETTEEEEEEECSS-CSSCEEEEESSTT-SCCEEEECGGGGCTT---SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEE
T ss_pred             EECCEEEEEEEcCC-ceEEEEEEEcCCC-CCcEEEECHHHhccC---CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            5 899999876542 3455789887653 345544432 11110   1112345667766  7877755443    6999


Q ss_pred             EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC-------CCCceeEEEEEEcCCCCcccceecccC
Q 006979          170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-------ALNSTTEIVAIALNGQNIQEPKVLVSG  242 (623)
Q Consensus       170 ~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~-------~~~~~~~L~~idl~~g~~~~~~~l~~~  242 (623)
                      +|++++  ...+++..    ...+..+.|||||+.|+|++.+....       ......+||++++.++..+. +.+...
T Consensus       156 ~d~~tg--~~~~~~~~----~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~~v~~~  228 (710)
T 2xdw_A          156 MKVDGA--KELPDVLE----RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEF  228 (710)
T ss_dssp             EETTTT--EEEEEEEE----EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECC
T ss_pred             EECCCC--CCCccccc----CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc-eEEecc
Confidence            999987  55554432    23356799999999999998764310       01234679999998875211 233232


Q ss_pred             ---CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC------CCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          243 ---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE------NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       243 ---~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                         ..+...+.|||||++|++...+...   ...+||++|+++      +.. ....+....+     . ....|++||+
T Consensus       229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~-----~-~~~~~s~dg~  298 (710)
T 2xdw_A          229 PDEPKWMGGAELSDDGRYVLLSIREGCD---PVNRLWYCDLQQESNGITGIL-KWVKLIDNFE-----G-EYDYVTNEGT  298 (710)
T ss_dssp             TTCTTCEEEEEECTTSCEEEEEEECSSS---SCCEEEEEEGGGSSSSSCSSC-CCEEEECSSS-----S-CEEEEEEETT
T ss_pred             CCCCeEEEEEEEcCCCCEEEEEEEccCC---CccEEEEEECcccccccCCcc-ceEEeeCCCC-----c-EEEEEeccCC
Confidence               3345678999999999998854321   156899999986      321 1233333322     1 2346899998


Q ss_pred             -EEEEEeCCCCeeeEEEEecCCCe---EEEEeeccc--ccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          314 -LFFVTDRKNGFWNLHKWIESNNE---VLAIYSLDA--EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       314 -l~~~~~~~~g~~~L~~~d~~~~~---~~~l~~~~~--~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                       ++|.++......+|+++|+++++   .+.|+++..  .+.         .+.+.    +++.++++..+++..+|++++
T Consensus       299 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~---------~~~~~----~~~~lv~~~~~~g~~~l~~~~  365 (710)
T 2xdw_A          299 VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE---------WVACV----RSNFLVLCYLHDVKNTLQLHD  365 (710)
T ss_dssp             EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE---------EEEEE----TTTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE---------EEEEE----cCCEEEEEEEECCEEEEEEEE
Confidence             88888764447789999998764   466665422  122         23333    578899999999999999999


Q ss_pred             CCCC-ceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc--ceeeeeEEEeccCCCCccCCCCCCCcE
Q 006979          388 DFGH-SLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK--LKAVDFKVVWSSSPDTLKYKSYFSLPE  462 (623)
Q Consensus       388 ~~~~-~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~--~~~lt~~~~~~~~~~~~~~~~~~~~~~  462 (623)
                      +.+| ..+.|+.+...+..+  +++++.+++..++...|..+|.+++++++  .+.++      ......++...+ .++
T Consensus       366 ~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~------~~~~~~~~~~~~-~~~  438 (710)
T 2xdw_A          366 LATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFR------EVTVKGIDASDY-QTV  438 (710)
T ss_dssp             TTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEE------ECCCTTCCGGGE-EEE
T ss_pred             CCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEee------ecccCCcCcccc-EEE
Confidence            8544 467787765555555  56788999999999999999999999887  44433      222112444443 678


Q ss_pred             EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHc-CceEEEEECCCCCCCCchh
Q 006979          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~-~G~~v~~~d~rGs~~~g~~  541 (623)
                      .+.+++. +|..|+++++.|++  +..  +++.|+||++|||+.......|....+.|++ +||+|+++|+||++++|+.
T Consensus       439 ~~~~~~~-dg~~i~~~~~~p~~--~~~--~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~  513 (710)
T 2xdw_A          439 QIFYPSK-DGTKIPMFIVHKKG--IKL--DGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGET  513 (710)
T ss_dssp             EEEEECT-TSCEEEEEEEEETT--CCC--SSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHH
T ss_pred             EEEEEcC-CCCEEEEEEEecCC--CCC--CCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCCChH
Confidence            9999998 99999999999987  222  5678999999999887777778887788888 9999999999999999999


Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~  614 (623)
                      |.+.....++...++|+.+++++|++++++|++||+|+|+|+||++++.++ .+|++|+|+|+.+|+.|+..+.
T Consensus       514 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~  587 (710)
T 2xdw_A          514 WHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFH  587 (710)
T ss_dssp             HHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGG
T ss_pred             HHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhcc
Confidence            998877778888899999999999999999999999999999999999999 7899999999999999986653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=100.00  E-value=4e-42  Score=393.78  Aligned_cols=477  Identities=13%  Similarity=0.082  Sum_probs=338.1

Q ss_pred             CceEEcC-CCcEEEEeecCCC---CCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCCC
Q 006979           92 GGTAVDG-HGRLIWLESRPTE---AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ  165 (623)
Q Consensus        92 ~~~~~~~-~~~~~~l~~~~~e---~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~  165 (623)
                      ..+.||| |+.|.+......-   .....+|.++..+| +.+.++....         .....++++|  .|+|+.  ++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~-~~~~l~~~~~---------~~~~~~~SPdG~~la~~~--~~  132 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-QLITEERIPN---------NTQWVTWSPVGHKLAYVW--NN  132 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECCSSCCCT---------TEEEEEECSSTTCEEEEE--TT
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC-cEEEcccCCC---------cceeeEECCCCCEEEEEE--CC
Confidence            3478899 7878776542110   12245666666543 4444443220         1234455555  788884  46


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCC---------------eeecceeeCCCCCEEEEEEeccCCC---------------
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPL---------------VSYADGIFDPRFNRYVTVREDRRQD---------------  215 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~---------------~~~~d~~~sPdG~~l~~v~~~~~~~---------------  215 (623)
                      .||++++.++  ..++||.......               .+...+.|||||++|+|.+.+...-               
T Consensus       133 ~i~~~~~~~~--~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~  210 (740)
T 4a5s_A          133 DIYVKIEPNL--PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQY  210 (740)
T ss_dssp             EEEEESSTTS--CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSS
T ss_pred             eEEEEECCCC--ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCC
Confidence            7999999988  7888886421100               1123478999999999997654310               


Q ss_pred             ------------CCCceeEEEEEEcCC---CCcccceeccc------CCCcccceeeCCCCCEEEEEEecCCCCCCCceE
Q 006979          216 ------------ALNSTTEIVAIALNG---QNIQEPKVLVS------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE  274 (623)
Q Consensus       216 ------------~~~~~~~L~~idl~~---g~~~~~~~l~~------~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~  274 (623)
                                  .......|+++|+++   ++....+.+..      .......+.|||||+.+++......    +...
T Consensus       211 ~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~----~~~~  286 (740)
T 4a5s_A          211 PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ----NYSV  286 (740)
T ss_dssp             CEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST----TEEE
T ss_pred             CcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC----CEEE
Confidence                        012345799999998   72101455543      3334567899999998877764433    3667


Q ss_pred             EEEEEecCCC----ceeeeEEEcCCCCCcccc--CcCceeCCCCc-EE-EEEeCCCCeeeEEEEecCCCeEEEEeecccc
Q 006979          275 LWVGYISENG----DVYKRVCVAGFDPTIVES--PTEPKWSSKGE-LF-FVTDRKNGFWNLHKWIESNNEVLAIYSLDAE  346 (623)
Q Consensus       275 L~v~d~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~ws~DG~-l~-~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~  346 (623)
                      |+++|++++.    ......++......|...  ...|.|+|||+ ++ +.+++ +|+.+||++|.++++.++|+.+..+
T Consensus       287 i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~-~G~~~l~~~~~~~~~~~~lT~g~~~  365 (740)
T 4a5s_A          287 MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE-EGYRHICYFQIDKKDCTFITKGTWE  365 (740)
T ss_dssp             EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT-TSCEEEEEEETTCSSCEESCCSSSC
T ss_pred             EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC-CCceEEEEEECCCCceEecccCCEE
Confidence            9999998874    111122222222233321  34799999999 66 67776 8999999999999999999876555


Q ss_pred             cccccccccCcceeEEeecCCCCEEEEEEEE----CCeEEEEEEeCCCCcee-ecccC----CcceE--eeeecCCEEEE
Q 006979          347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQ----NGRSYLGILDDFGHSLS-LLDIP----FTDID--NITLGNDCLFV  415 (623)
Q Consensus       347 ~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~----~g~~~L~~~d~~~~~~~-~lt~~----~~~v~--~~~~~~~~~~~  415 (623)
                      +..+.+         .    +++.|||++.+    .+..+||+++++++..+ +|+..    ...+.  .++++++.+++
T Consensus       366 v~~~~~---------~----d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~  432 (740)
T 4a5s_A          366 VIGIEA---------L----TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL  432 (740)
T ss_dssp             EEEEEE---------E----CSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred             EEEEEE---------E----eCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEE
Confidence            443211         1    78899999877    56889999999887765 77743    12233  33888998888


Q ss_pred             EEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCC--CccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCC
Q 006979          416 EGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD--TLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEE  493 (623)
Q Consensus       416 ~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~  493 (623)
                      ..+++. ++.++++++++++..+     ++..+..  ..+....++.++.+.+ .. +|..++++++.|++  +++  .+
T Consensus       433 ~~s~~~-~p~~~l~~~~~~~~~~-----~l~~n~~~~~~~~~~~~~~~~~~~~-~~-dg~~l~~~~~~P~~--~~~--~~  500 (740)
T 4a5s_A          433 RCSGPG-LPLYTLHSSVNDKGLR-----VLEDNSALDKMLQNVQMPSKKLDFI-IL-NETKFWYQMILPPH--FDK--SK  500 (740)
T ss_dssp             EECSBS-SCEEEEEETTTTEEEE-----EEECCHHHHHHHTTEECCEEEEEEE-EE-TTEEEEEEEEECTT--CCT--TS
T ss_pred             EeCCCC-CCEEEEEECCCCcEEE-----EeccChhhhhhhhhccCCccEEEEE-cc-CCeEEEEEEEeCCC--CCC--CC
Confidence            887776 7889999988776433     2333221  1233445667778888 55 89999999999987  443  67


Q ss_pred             CCCEEEEecCCCCCccc-CcCC-HHhHHHH-cCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          494 KPPLLVKSHGGPTSEAR-GILN-LSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~-~~~~-~~~~~~a-~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      ++|+||++||++..... ..+. ...++++ ++||+|+.+|+||++++|..+......+++..+++|+.+++++|.+++.
T Consensus       501 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~  580 (740)
T 4a5s_A          501 KYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGF  580 (740)
T ss_dssp             CEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTT
T ss_pred             CccEEEEECCCCcccccccccCcCHHHHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCC
Confidence            89999999999876432 2332 2344555 6999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                      +|++||+|+|+||||++++.++ .+|++|+|+|+.+|+.|+..
T Consensus       581 ~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~  623 (740)
T 4a5s_A          581 VDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEY  623 (740)
T ss_dssp             EEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGG
T ss_pred             cCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHH
Confidence            9999999999999999999999 68999999999999999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=2.3e-41  Score=387.49  Aligned_cols=489  Identities=17%  Similarity=0.176  Sum_probs=347.4

Q ss_pred             CCcCCHHHHhcc----CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCC-c------------
Q 006979           76 KSPLTADVVSGA----SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEY-A------------  137 (623)
Q Consensus        76 ~s~~t~~~~~~~----~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~-~------------  137 (623)
                      ..+||++.++..    ...+..+.||| |+.+++...+..+.....|+.++..+| +.+.++.... .            
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~   98 (741)
T 2ecf_A           20 AEKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKA   98 (741)
T ss_dssp             --CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC------------
T ss_pred             cccccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhh
Confidence            467999999852    34567899999 888888875332223556777776543 4444442110 0            


Q ss_pred             c--ceeeee-cCCceEEEeCC--EEEEEeCCCCcEEEEeCCCCCC--CceecCCCCCCCCeeecceeeCCCCCEEEEEEe
Q 006979          138 V--RTTAQE-YGGGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDS--SPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE  210 (623)
Q Consensus       138 ~--r~~~~~-~g~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~--~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~  210 (623)
                      .  +.++.. .+...+++++|  .|+|...  +.||++|++++ .  ..++++..    ......+.|||||++|+++..
T Consensus        99 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~--~~i~~~d~~~~-~~~~~~~l~~~----~~~~~~~~~SPDG~~la~~~~  171 (741)
T 2ecf_A           99 RRERQRIAAMTGIVDYQWSPDAQRLLFPLG--GELYLYDLKQE-GKAAVRQLTHG----EGFATDAKLSPKGGFVSFIRG  171 (741)
T ss_dssp             --------CCEESCCCEECTTSSEEEEEET--TEEEEEESSSC-STTSCCBCCCS----SSCEEEEEECTTSSEEEEEET
T ss_pred             hhhhhhhccccCcceeEECCCCCEEEEEeC--CcEEEEECCCC-CcceEEEcccC----CcccccccCCCCCCEEEEEeC
Confidence            0  111100 12456677766  6777764  77999999865 2  34566653    344667899999999999864


Q ss_pred             ccCCCCCCceeEEEEEEcCCCCcccceecccCCCc-----------------ccceeeCCCCCEEEEEEecCCCCC----
Q 006979          211 DRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF-----------------YAFPRMDPRGERMAWIEWHHPNMP----  269 (623)
Q Consensus       211 ~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~-----------------~~~p~wSPDG~~la~~~~~~~~~p----  269 (623)
                                .+|+++|+++++   .++++.....                 ...+.|||||++|+|...+....+    
T Consensus       172 ----------~~i~~~d~~~g~---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~  238 (741)
T 2ecf_A          172 ----------RNLWVIDLASGR---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKR  238 (741)
T ss_dssp             ----------TEEEEEETTTTE---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEE
T ss_pred             ----------CcEEEEecCCCC---EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEec
Confidence                      369999999987   6666543321                 356899999999999976643211    


Q ss_pred             ---------------------CCceEEEEEEecC-CCce--e--------------------------------------
Q 006979          270 ---------------------WDKAELWVGYISE-NGDV--Y--------------------------------------  287 (623)
Q Consensus       270 ---------------------~~~~~L~v~d~~~-~~~~--~--------------------------------------  287 (623)
                                           .....|+++|+++ +...  .                                      
T Consensus       239 ~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d  318 (741)
T 2ecf_A          239 YEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVT  318 (741)
T ss_dssp             EEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEE
T ss_pred             CCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEE
Confidence                                 1223677777665 3210  0                                      


Q ss_pred             -----eeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccc-cccccCcceeE
Q 006979          288 -----KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-LWVFGINSYEI  361 (623)
Q Consensus       288 -----~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~-~w~~~~~~~~~  361 (623)
                           ...++......|...+..+.|+|||++++.+.. +|..+||.+|.+++ .+.++.....+... .|+        
T Consensus       319 ~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s--------  388 (741)
T 2ecf_A          319 LASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSER-TGFQHLYRIDSKGK-AAALTHGNWSVDELLAVD--------  388 (741)
T ss_dssp             TTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECT-TSSCEEEEECSSSC-EEESCCSSSCEEEEEEEE--------
T ss_pred             CCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecC-CCccEEEEEcCCCC-eeeeeecceEEEeEeEEe--------
Confidence                 000000000011113357899999997777776 78889999998766 67776554333322 233        


Q ss_pred             EeecCCCCEEEEEEEECC--eEEEEEEeCCCCceeecccCCcceEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCcce
Q 006979          362 IQSHGEKNLIACSYRQNG--RSYLGILDDFGHSLSLLDIPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (623)
Q Consensus       362 l~~s~~~~~l~~~~~~~g--~~~L~~~d~~~~~~~~lt~~~~~v~~--~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~  437 (623)
                          ++++.++++...++  ..+||.++.+++..++|+... .+..  ++++++.+++..++...|+.+|+++++++..+
T Consensus       389 ----~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~  463 (741)
T 2ecf_A          389 ----EKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAP-GMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIA  463 (741)
T ss_dssp             ----TTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSC-SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEE
T ss_pred             ----CCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCC-CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEE
Confidence                38888998887766  788999998887788887633 3333  38899999999999999999999998776544


Q ss_pred             eeeeEEEeccCCC---C-ccCCC--CCCCcEEEEeecCCCC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc
Q 006979          438 AVDFKVVWSSSPD---T-LKYKS--YFSLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR  510 (623)
Q Consensus       438 ~lt~~~~~~~~~~---~-~~~~~--~~~~~~~i~~~~~~dg-~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~  510 (623)
                      .|+      .+..   . .+.+.  .+..++.+.+++. +| ..++++++.|.+  +++  +++.|+||++||++.....
T Consensus       464 ~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~l~~~~~~P~~--~~~--~~~~p~vv~~hG~~~~~~~  532 (741)
T 2ecf_A          464 TLV------ENDLADPKHPYARYREAQRPVEFGTLTAA-DGKTPLNYSVIKPAG--FDP--AKRYPVAVYVYGGPASQTV  532 (741)
T ss_dssp             CSS------CCCSSSTTSTTHHHHTTCCCEEEEEEECT-TSSCEEEEEEECCSS--CCT--TSCEEEEEECCCSTTCCSC
T ss_pred             Eec------cCcccccccchhhhhccCCCcEEEEEEcC-CCCEEEEEEEEeCCC--CCC--CCCcCEEEEEcCCCCcccc
Confidence            433      2221   0 23333  5778899999987 89 899999999986  222  5678999999999766432


Q ss_pred             -CcCC-----HHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChH
Q 006979          511 -GILN-----LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAG  584 (623)
Q Consensus       511 -~~~~-----~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~G  584 (623)
                       ..|.     ..++.|+++||+|+.+|+||.++++..+.......++..+++|+.+++++|.+++.+|++||+|+|||+|
T Consensus       533 ~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~G  612 (741)
T 2ecf_A          533 TDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNG  612 (741)
T ss_dssp             SSCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHH
T ss_pred             cccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChH
Confidence             2344     5789999999999999999999999999888888888889999999999999999899999999999999


Q ss_pred             HHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          585 GYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       585 G~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      |++++.++ .+|++|+++|+.+|+.|+.
T Consensus       613 G~~a~~~a~~~p~~~~~~v~~~~~~~~~  640 (741)
T 2ecf_A          613 GYMTLMLLAKASDSYACGVAGAPVTDWG  640 (741)
T ss_dssp             HHHHHHHHHHCTTTCSEEEEESCCCCGG
T ss_pred             HHHHHHHHHhCCCceEEEEEcCCCcchh
Confidence            99999998 7899999999999999865

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=100.00  E-value=4.5e-41  Score=382.32  Aligned_cols=473  Identities=15%  Similarity=0.144  Sum_probs=340.3

Q ss_pred             cCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCC-CccceeeeecCCceEEEeCC--EEEEEeCCC---
Q 006979           91 LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE-YAVRTTAQEYGGGAFRIFGD--TVIFSNYKD---  164 (623)
Q Consensus        91 ~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~-~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~---  164 (623)
                      ...+..+ |+.+||+..+.. +.+..||+.+..+ ++.+.++... ....   +......+.+++|  .|+|.....   
T Consensus        72 ~~~p~~d-G~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~l~d~~~~a~~---~~~~~~~~~~SPDG~~la~~~~~~G~~  145 (695)
T 2bkl_A           72 VSTPSRR-NGRFFYVRTHKD-KEKAILYWRQGES-GQEKVLLDPNGWSKD---GTVSLGTWAVSWDGKKVAFAQKPNAAD  145 (695)
T ss_dssp             ECCCEEE-TTEEEEEEECTT-CSSCEEEEEESTT-SCCEEEECGGGSSSS---SCEEEEEEEECTTSSEEEEEEEETTCS
T ss_pred             CCCCEEE-CCEEEEEEEcCC-CeEEEEEEEcCCC-CCcEEEEchHHhccC---CCEEEEEEEECCCCCEEEEEECCCCCc
Confidence            3344433 999999886653 3467789887543 3556665421 1110   1122445666766  778775443   


Q ss_pred             -CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC----CCCceeEEEEEEcCCCCcccceec
Q 006979          165 -QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD----ALNSTTEIVAIALNGQNIQEPKVL  239 (623)
Q Consensus       165 -~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~----~~~~~~~L~~idl~~g~~~~~~~l  239 (623)
                       ..|+++|+++|  +..+....   ....+..+.|||||+.|+|++.+....    ......+||++++.++..+. +.+
T Consensus       146 ~~~i~v~dl~tg--~~~~~~~~---~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~lv  219 (695)
T 2bkl_A          146 EAVLHVIDVDSG--EWSKVDVI---EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-TVV  219 (695)
T ss_dssp             CCEEEEEETTTC--CBCSSCCB---SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-EEE
T ss_pred             eEEEEEEECCCC--CCcCCccc---CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc-eEE
Confidence             36999999987  43311111   112236789999999999998754310    01234779999998875221 233


Q ss_pred             ccC---CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEE
Q 006979          240 VSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (623)
Q Consensus       240 ~~~---~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~  316 (623)
                      ...   ..++..+.|||||++|++...+..    ...+||+++..++.   ...+....+     ....+.| +||++++
T Consensus       220 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~----~~~~l~~~~~~~~~---~~~l~~~~~-----~~~~~~~-~~g~l~~  286 (695)
T 2bkl_A          220 HERTGDPTTFLQSDLSRDGKYLFVYILRGW----SENDVYWKRPGEKD---FRLLVKGVG-----AKYEVHA-WKDRFYV  286 (695)
T ss_dssp             ECCCCCTTCEEEEEECTTSCCEEEEEEETT----TEEEEEEECTTCSS---CEEEEECSS-----CCEEEEE-ETTEEEE
T ss_pred             EecCCCCEEEEEEEECCCCCEEEEEEeCCC----CceEEEEEcCCCCc---eEEeecCCC-----ceEEEEe-cCCcEEE
Confidence            332   235678999999999999986652    26789998765442   333333322     3345667 6766767


Q ss_pred             EEeCCCCeeeEEEEecCCCe---EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce
Q 006979          317 VTDRKNGFWNLHKWIESNNE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~~~---~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~  393 (623)
                      .++...+..+|+++|+++++   .+.|+++....     .  ...+.+     .++.++++..+++..+|++++++++..
T Consensus       287 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-----~--l~~~~~-----~~~~lv~~~~~dg~~~l~~~~~~g~~~  354 (695)
T 2bkl_A          287 LTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSA-----S--LLSVSI-----VGGHLSLEYLKDATSEVRVATLKGKPV  354 (695)
T ss_dssp             EECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSC-----E--EEEEEE-----ETTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred             EECCCCCCCEEEEEeCCCCCccCCeEEecCCCCC-----e--EEEEEE-----ECCEEEEEEEECCEEEEEEEeCCCCee
Confidence            77653457899999987765   36666542110     0  012233     356789999999999999999887777


Q ss_pred             eecccC-CcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCCCccCCCCCCCcEEEEeecCC
Q 006979          394 SLLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEV  470 (623)
Q Consensus       394 ~~lt~~-~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  470 (623)
                      +.+..+ ...+..+  +++++.+++..++...|..||++++++++.+.|+      .... .++... ..++.+.+++. 
T Consensus       355 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~------~~~~-~~~~~~-~~~~~~~~~~~-  425 (695)
T 2bkl_A          355 RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA------KVDV-PMNPEQ-YQVEQVFYASK-  425 (695)
T ss_dssp             EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE------ECCC-SSCGGG-EEEEEEEEECT-
T ss_pred             EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe------cCCC-CCCHHH-CeEEEEEEECC-
Confidence            777765 3334444  6678899999999999999999999988854443      2221 244443 36888999988 


Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++++++.|++  ++.  +++.|+||++|||+.....+.|....+.|+++||+|+.+|+||++++|+.|.+.....+
T Consensus       426 dg~~i~~~~~~p~~--~~~--~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~  501 (695)
T 2bkl_A          426 DGTKVPMFVVHRKD--LKR--DGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDK  501 (695)
T ss_dssp             TSCEEEEEEEEETT--CCC--SSCCCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGG
T ss_pred             CCCEEEEEEEECCC--CCC--CCCccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhc
Confidence            99999999999987  222  56789999999998887777888888889999999999999999999999998877778


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHh
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVII  613 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~  613 (623)
                      +...++|+.+++++|++++.+|++||+|+|+|+||+++++++ .+|++|+|+|+.+|+.|+..+
T Consensus       502 ~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~  565 (695)
T 2bkl_A          502 KQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRY  565 (695)
T ss_dssp             THHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTG
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhc
Confidence            888899999999999999999999999999999999999999 789999999999999998654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=100.00  E-value=1.6e-40  Score=380.55  Aligned_cols=468  Identities=15%  Similarity=0.158  Sum_probs=339.0

Q ss_pred             cC-CCcEEEEeecCCCCCceEEEEcCCCC--CCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCCC----cE
Q 006979           97 DG-HGRLIWLESRPTEAGRGVLVKEPAKA--GDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ----RL  167 (623)
Q Consensus        97 ~~-~~~~~~l~~~~~e~g~~~l~~~~~~~--gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~----~l  167 (623)
                      +| |+.+||+..+.. +.+..||+.+...  +++.+.+++..  ..+.-+......+.+++|  .|+|.....|    +|
T Consensus       115 ~pdG~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~lld~~--~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i  191 (741)
T 1yr2_A          115 QRRGASVFYSWNSGL-MNQSQLLVRPADAPVGTKGRVLLDPN--TWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTV  191 (741)
T ss_dssp             EEETTEEEEEEECSS-CSSCEEEEEETTSCTTCCCEEEECGG--GCC----EEEEEEEECTTSSEEEEEEEETTCSEEEE
T ss_pred             EEECCEEEEEEEcCC-CeEEEEEEEcCCccCCCCCEEEECHH--HhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEE
Confidence            35 999999887643 2367789887541  23555554321  101011122345667766  7888754433    49


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCC-----CCCCceeEEEEEEcCCCCcccceecccC
Q 006979          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-----DALNSTTEIVAIALNGQNIQEPKVLVSG  242 (623)
Q Consensus       168 ~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~-----~~~~~~~~L~~idl~~g~~~~~~~l~~~  242 (623)
                      |++|+++|  +....+..    ...+..+.|||| +.|+|++.+...     .......+||++++.++..+. +.+...
T Consensus       192 ~v~dl~tg--~~~~~~~~----~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-~lv~~~  263 (741)
T 1yr2_A          192 KFVGVADG--KPLADELK----WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD-QPVFAT  263 (741)
T ss_dssp             EEEETTTC--CEEEEEEE----EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC-EEEECC
T ss_pred             EEEECCCC--CCCCccCC----CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC-EEEecc
Confidence            99999987  54443221    234568999999 999998865431     001123679999998775211 233332


Q ss_pred             C---CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee-eEEEcCCCCCccccCcCceeCCCCc-EEEE
Q 006979          243 S---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKWSSKGE-LFFV  317 (623)
Q Consensus       243 ~---~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~  317 (623)
                      .   .+...+.|||||++|++...+..+   ...+||++|++++..  . .+.+....    .....+ |++||+ +++.
T Consensus       264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~l~~~d~~~~~~--~~~~~l~~~~----~~~~~~-~~~dg~~l~~~  333 (741)
T 1yr2_A          264 PELPKRGHGASVSSDGRWVVITSSEGTD---PVNTVHVARVTNGKI--GPVTALIPDL----KAQWDF-VDGVGDQLWFV  333 (741)
T ss_dssp             TTCTTCEEEEEECTTSCEEEEEEECTTC---SCCEEEEEEEETTEE--CCCEEEECSS----SSCEEE-EEEETTEEEEE
T ss_pred             CCCCeEEEEEEECCCCCEEEEEEEccCC---CcceEEEEECCCCCC--cccEEecCCC----CceEEE-EeccCCEEEEE
Confidence            2   356789999999999999865432   256899999987521  2 23333322    122333 458988 8888


Q ss_pred             EeCCCCeeeEEEEecCCC--eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceee
Q 006979          318 TDRKNGFWNLHKWIESNN--EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL  395 (623)
Q Consensus       318 ~~~~~g~~~L~~~d~~~~--~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~  395 (623)
                      ++......+|+++|++++  +.+.++++....        ...+.+     .++.++++..+++..+|++++++++..+.
T Consensus       334 s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~--------l~~~~~-----~~~~lv~~~~~dg~~~l~~~~~~g~~~~~  400 (741)
T 1yr2_A          334 SGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN--------LESVGI-----AGNRLFASYIHDAKSQVLAFDLDGKPAGA  400 (741)
T ss_dssp             ECTTCTTCEEEEEECSSSSCEEEEEECCCSSE--------EEEEEE-----EBTEEEEEEEETTEEEEEEEETTSCEEEE
T ss_pred             ECCCCCCCEEEEEeCCCCccccEEEecCCCCe--------EEEEEE-----ECCEEEEEEEECCEEEEEEEeCCCCceee
Confidence            887444788999998873  567777543211        012223     45789999999999999999998777788


Q ss_pred             cccC-CcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCCCccCCCCCCCcEEEEeecCCCC
Q 006979          396 LDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG  472 (623)
Q Consensus       396 lt~~-~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~dg  472 (623)
                      |+.+ ...+..+  +++++.++|..++...|..||++++++++.+.|+      .. ...++...+ .++.+.+++. +|
T Consensus       401 l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~------~~-~~~~~~~~~-~~~~~~~~~~-dg  471 (741)
T 1yr2_A          401 VSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWE------PV-HLTFDPADF-RVEQVFYPSK-DG  471 (741)
T ss_dssp             CBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECS------CC-CCSSCGGGE-EEEEEEEECT-TS
T ss_pred             ccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe------cC-CCCCChhHC-EEEEEEEEcC-CC
Confidence            8764 3344444  6788899999999999999999999988754332      22 223444443 7789999988 99


Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI  552 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~  552 (623)
                      ..++++++.|++.      +++.|+||++|||+.....+.|....+.|+++||+|+.+|+||++++|+.|.+.....++.
T Consensus       472 ~~i~~~~~~p~~~------~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~  545 (741)
T 1yr2_A          472 TKVPMFIVRRKDA------KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQ  545 (741)
T ss_dssp             CEEEEEEEEETTC------CSCCCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGGTH
T ss_pred             CEEEEEEEecCCC------CCCCcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhcCC
Confidence            9999999999762      3568999999999887777788888889999999999999999999999999877777778


Q ss_pred             chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHh
Q 006979          553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVII  613 (623)
Q Consensus       553 ~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~  613 (623)
                      ..++|+.+++++|++++++|++||+|+|+|+||++++.++ .+|++|+|+|+.+|+.|+..+
T Consensus       546 ~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~  607 (741)
T 1yr2_A          546 NVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRF  607 (741)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSG
T ss_pred             CcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccc
Confidence            8899999999999999999999999999999999999999 789999999999999998654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=100.00  E-value=6e-41  Score=373.47  Aligned_cols=445  Identities=19%  Similarity=0.112  Sum_probs=326.0

Q ss_pred             cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCC---CC-
Q 006979           91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK---DQ-  165 (623)
Q Consensus        91 ~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~---~~-  165 (623)
                      +..+.++| |+.|.|...+   +|...||..+   +++.+.++....        ......++++|+++|+...   +. 
T Consensus        24 ~~~~~~~~DG~~la~~s~~---~g~~~lw~~~---~g~~~~lt~~~~--------~~~~~~~~spd~~l~~~~~~~g~~~   89 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFS---EGSVNAYLYD---GGETVKLNREPI--------NSVLDPHYGVGRVILVRDVSKGAEQ   89 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEE---TTEEEEEEEE---TTEEEECCSSCC--------SEECEECTTCSEEEEEEECSTTSCC
T ss_pred             hheeecCCCCCeEEEEEcc---CCceeEEEEc---CCCcEeeecccc--------cccccccCCCCeEEEEeccCCCCcc
Confidence            45778888 8899998765   4778899863   235566654320        1123445567778886554   22 


Q ss_pred             -cEEEEeC--CCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccC
Q 006979          166 -RLYKHSI--DSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG  242 (623)
Q Consensus       166 -~l~~~d~--~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~  242 (623)
                       +||.+++  +++   ..+++...   ..  ....|+|||+.++++.....        .+.++|+++++   .++++..
T Consensus        90 ~~l~~~~~~~~g~---~~~l~~~~---~~--~~~~~s~dg~~~~~~s~~~~--------~~~l~d~~~g~---~~~l~~~  150 (582)
T 3o4h_A           90 HALFKVNTSRPGE---EQRLEAVK---PM--RILSGVDTGEAVVFTGATED--------RVALYALDGGG---LRELARL  150 (582)
T ss_dssp             EEEEEEETTSTTC---CEECTTSC---SB--EEEEEEECSSCEEEEEECSS--------CEEEEEEETTE---EEEEEEE
T ss_pred             eEEEEEeccCCCc---cccccCCC---Cc--eeeeeCCCCCeEEEEecCCC--------CceEEEccCCc---EEEeecC
Confidence             5888988  543   44666531   22  24589999998888766432        23355888887   6777655


Q ss_pred             CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (623)
Q Consensus       243 ~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~  322 (623)
                      ..  ..+.|||||++|++...+..    +...||++|++++.    .+.+.+..    .....+.|||||+.++.++. .
T Consensus       151 ~~--~~~~~spDG~~la~~~~~~~----~~~~i~~~d~~~g~----~~~l~~~~----~~~~~~~~SpDG~~l~~~~~-~  215 (582)
T 3o4h_A          151 PG--FGFVSDIRGDLIAGLGFFGG----GRVSLFTSNLSSGG----LRVFDSGE----GSFSSASISPGMKVTAGLET-A  215 (582)
T ss_dssp             SS--CEEEEEEETTEEEEEEEEET----TEEEEEEEETTTCC----CEEECCSS----CEEEEEEECTTSCEEEEEEC-S
T ss_pred             CC--ceEEECCCCCEEEEEEEcCC----CCeEEEEEcCCCCC----ceEeecCC----CccccceECCCCCEEEEccC-C
Confidence            44  67899999999999886643    24669999998773    33445444    45578999999994446665 6


Q ss_pred             CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcc
Q 006979          323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD  402 (623)
Q Consensus       323 g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~  402 (623)
                      +..+|+++|+++++.+.+......+..+.    ........++||| .++++...++..+||.+    |+...  .....
T Consensus       216 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~----g~~~~--~~~~~  284 (582)
T 3o4h_A          216 REARLVTVDPRDGSVEDLELPSKDFSSYR----PTAITWLGYLPDG-RLAVVARREGRSAVFID----GERVE--APQGN  284 (582)
T ss_dssp             SCEEEEEECTTTCCEEECCCSCSHHHHHC----CSEEEEEEECTTS-CEEEEEEETTEEEEEET----TEEEC--CCSSE
T ss_pred             CeeEEEEEcCCCCcEEEccCCCcChhhhh----hccccceeEcCCC-cEEEEEEcCCcEEEEEE----CCeec--cCCCc
Confidence            77899999999988773333333333344    0000100112377 88899989999888876    44433  22234


Q ss_pred             eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCCCccCC---CCCCCcEEEEeecCCCCeEEEEEE
Q 006979          403 IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYK---SYFSLPELIEFPTEVPGQKAYAYY  479 (623)
Q Consensus       403 v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~dg~~i~~~l  479 (623)
                      +..++..++++++..++...|+++|.+++++ +.++|            .+++   ..+...+.+.++.. +|..+++++
T Consensus       285 v~~~~~sdg~~l~~~s~~~~p~~l~~~d~~~-~~~~l------------~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~~  350 (582)
T 3o4h_A          285 HGRVVLWRGKLVTSHTSLSTPPRIVSLPSGE-PLLEG------------GLPEDLRRSIAGSRLVWVESF-DGSRVPTYV  350 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEEETTCC-EEECC------------CCCHHHHHTEEEEEEEEEECT-TSCEEEEEE
T ss_pred             eEEEEecCCEEEEEEcCCCCCCeEEEEcCCC-ceEEE------------ecCCccccccCcceEEEEECC-CCCEEEEEE
Confidence            5555222677888888889999999998765 43332            1222   44667889999997 899999999


Q ss_pred             EcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHH
Q 006979          480 YPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCC  559 (623)
Q Consensus       480 ~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~  559 (623)
                      +.|++.      .++.|+||++||++.......|...++.|+++||+|+.+|+||++++|+++.+.....++...++|+.
T Consensus       351 ~~p~~~------~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~~~~~~~~~d~~  424 (582)
T 3o4h_A          351 LESGRA------PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVS  424 (582)
T ss_dssp             EEETTS------CSSEEEEEEECSSSSCCCCSSCCHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHH
T ss_pred             EcCCCC------CCCCcEEEEECCCcccccccccCHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhhhhcccccHHHHH
Confidence            999862      33789999999998776677888999999999999999999999999999999888889989999999


Q ss_pred             HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhhh
Q 006979          560 SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       560 ~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~~  616 (623)
                      ++++++.+++.+|  ||+|+|+|+||++++.++ .+|++|+++|+.+|+.|+..+...
T Consensus       425 ~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~  480 (582)
T 3o4h_A          425 AAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYEL  480 (582)
T ss_dssp             HHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHT
T ss_pred             HHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhc
Confidence            9999999998887  999999999999999999 779999999999999999876543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=100.00  E-value=4e-39  Score=366.92  Aligned_cols=468  Identities=15%  Similarity=0.128  Sum_probs=334.7

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCCCc
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQR  166 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~~  166 (623)
                      ..+..+.|||++.+.+..     ++.  ++.++..++ +.+.++...         .......+++|  .|+|+  .++.
T Consensus        82 ~~v~~~~~spd~~~~~~~-----~~~--i~~~d~~~~-~~~~l~~~~---------~~~~~~~~SpdG~~la~~--~~~~  142 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLFT-----QGG--LVGFDMLAR-KVTYLFDTN---------EETASLDFSPVGDRVAYV--RNHN  142 (706)
T ss_dssp             CCCEEEEETTTTEEEEEE-----TTE--EEEEETTTT-EEEEEECCT---------TCCTTCEECTTSSEEEEE--ETTE
T ss_pred             cCceeEEECCCCeEEEEE-----CCE--EEEEECCCC-ceEEccCCc---------ccccCCcCCCCCCEEEEE--ECCe
Confidence            346788899864455443     133  455554422 333333221         01233455555  78886  4577


Q ss_pred             EEEEeCCC-----CCCCceecCCCCCCC-----------CeeecceeeCCCCCEEEEEEeccCCC---------------
Q 006979          167 LYKHSIDS-----KDSSPLPITPDYGEP-----------LVSYADGIFDPRFNRYVTVREDRRQD---------------  215 (623)
Q Consensus       167 l~~~d~~~-----g~~~~~~Lt~~~~~~-----------~~~~~d~~~sPdG~~l~~v~~~~~~~---------------  215 (623)
                      ||++++++     +  ..++++......           ..+...+.|||||++|++.+.+....               
T Consensus       143 i~v~~~~~~~~~~g--~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~  220 (706)
T 2z3z_A          143 LYIARGGKLGEGMS--RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES  220 (706)
T ss_dssp             EEEEECBCTTSCCC--CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred             EEEEecCcccccCC--CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence            99999988     7  677776641110           00136788999999999987432110               


Q ss_pred             ---------CCCceeEEEEEEcCCCCcccceecccC---CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC
Q 006979          216 ---------ALNSTTEIVAIALNGQNIQEPKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN  283 (623)
Q Consensus       216 ---------~~~~~~~L~~idl~~g~~~~~~~l~~~---~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~  283 (623)
                               .......|+++|+++++   .+.+..+   ......+.|||||++|++...++..   ....|+++|++++
T Consensus       221 ~~~~y~~~g~~~~~~~l~~~d~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~---~~~~v~~~d~~~g  294 (706)
T 2z3z_A          221 KPLYYPMAGTPSHHVTVGIYHLATGK---TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ---NECKVNAYDAETG  294 (706)
T ss_dssp             EEECCCBTTSCCCEEEEEEEETTTTE---EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS---CEEEEEEEETTTC
T ss_pred             EEeeCCCCCCCCCeeEEEEEECCCCc---eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC---CeeEEEEEECCCC
Confidence                     01234789999999987   5555432   2335578999999999998766542   3567999998876


Q ss_pred             CceeeeEEEcCCCCCccccCcCceeCC--CCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccccc-ccccccCccee
Q 006979          284 GDVYKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR-PLWVFGINSYE  360 (623)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~ws~--DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~-~~w~~~~~~~~  360 (623)
                      ..  ...+.......|...+..+.|+|  ||++++.++. .+..+||.++.+++..+.|+.....+.. +.|+       
T Consensus       295 ~~--~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~-~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~s-------  364 (706)
T 2z3z_A          295 RF--VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR-DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFD-------  364 (706)
T ss_dssp             CE--EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT-TSSCEEEEEETTSCEEEECCCSSSCEEEEEEEC-------
T ss_pred             ce--eeEEEEccCCCeECccCCceeecCCCCEEEEEEcc-CCccEEEEEECCCCEEEecCCCCeEEEeeeEEc-------
Confidence            22  22222222212222346789999  9997777776 6888999999877777777655433332 3343       


Q ss_pred             EEeecCCCCEEEEEEEECC--eEEEEEEeCCCCceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          361 IIQSHGEKNLIACSYRQNG--RSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       361 ~l~~s~~~~~l~~~~~~~g--~~~L~~~d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                           |+++.|+++...++  ..+||++|.++++.++|+.... +..+  +++++.+++..++...|..+|++++++++.
T Consensus       365 -----pdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~  438 (706)
T 2z3z_A          365 -----PKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESG-MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSH  438 (706)
T ss_dssp             -----TTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSS-EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCEE
T ss_pred             -----CCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCc-eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCeE
Confidence                 38889999887665  5799999999988888875433 3333  888999999988888999999999988762


Q ss_pred             eeeeeEEEeccCCCCccCCCCCCCcEEEEeecCCCC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc-CcCC
Q 006979          437 KAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILN  514 (623)
Q Consensus       437 ~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~dg-~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~-~~~~  514 (623)
                      +.      +....  .+....++.++.+.++.. +| ..++++++.|++  +++  ++++|+||++|||+..... ..|.
T Consensus       439 ~~------~~~~~--~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~P~~--~~~--~~~~p~iv~~HGg~~~~~~~~~~~  505 (706)
T 2z3z_A          439 TL------LEAKN--PDTGYAMPEIRTGTIMAA-DGQTPLYYKLTMPLH--FDP--AKKYPVIVYVYGGPHAQLVTKTWR  505 (706)
T ss_dssp             EE------EECC--------CCCCEEEEEEECT-TSSSEEEEEEECCTT--CCT--TSCEEEEEECCCCTTCCCCCSCC-
T ss_pred             ee------ccccc--hhhhcCCCCcEEEEEEcC-CCCEEEEEEEEeCCC--CCC--CCCccEEEEecCCCCceeeccccc
Confidence            22      22221  234455678889999987 88 899999999987  332  5678999999999876543 2344


Q ss_pred             H----HhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHH
Q 006979          515 L----SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA  590 (623)
Q Consensus       515 ~----~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~  590 (623)
                      .    .++.|+++||.|+++|+||.++++..+.......++..+++|+.+++++|.+++.+|++||+|+|+|+||++++.
T Consensus       506 ~~~~~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~  585 (706)
T 2z3z_A          506 SSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTN  585 (706)
T ss_dssp             ---CCHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred             cCchHHHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHH
Confidence            3    688999999999999999999999999888888899889999999999999999999999999999999999999


Q ss_pred             Hh-cCCCceeEEEecccCCCHHH
Q 006979          591 AL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       591 ~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                      ++ .+|++|+++|+.+|+.|+..
T Consensus       586 ~a~~~p~~~~~~v~~~~~~~~~~  608 (706)
T 2z3z_A          586 LMLTHGDVFKVGVAGGPVIDWNR  608 (706)
T ss_dssp             HHHHSTTTEEEEEEESCCCCGGG
T ss_pred             HHHhCCCcEEEEEEcCCccchHH
Confidence            98 88999999999999998753

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=100.00  E-value=1.2e-38  Score=363.69  Aligned_cols=476  Identities=15%  Similarity=0.137  Sum_probs=325.0

Q ss_pred             cCceEEcC-CCcEEEEeecCCCC---CceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCC
Q 006979           91 LGGTAVDG-HGRLIWLESRPTEA---GRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKD  164 (623)
Q Consensus        91 ~~~~~~~~-~~~~~~l~~~~~e~---g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~  164 (623)
                      +..+.||| |+.|.+........   ....|+.++..++ +.+.+.... .     +........+++|  .|+|...  
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~~~-~-----~~~~~~~~~~SPdG~~la~~~~--  133 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG-DPQSLDPPE-V-----SNAKLQYAGWGPKGQQLIFIFE--  133 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC-CCEECCCTT-C-----CSCCCSBCCBCSSTTCEEEEET--
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC-ceEeccCCc-c-----ccccccccEECCCCCEEEEEEC--
Confidence            67899999 77787775332111   1134555555533 444443221 0     0001223344444  7888864  


Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCC---------------eeecceeeCCCCCEEEEEEeccCCC--------------
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPL---------------VSYADGIFDPRFNRYVTVREDRRQD--------------  215 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~---------------~~~~d~~~sPdG~~l~~v~~~~~~~--------------  215 (623)
                      ++||++++.++  ..++++......-               .++..+.|||||++|++...+....              
T Consensus       134 ~~i~~~~~~~g--~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~  211 (723)
T 1xfd_A          134 NNIYYCAHVGK--QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP  211 (723)
T ss_dssp             TEEEEESSSSS--CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred             CeEEEEECCCC--ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCC
Confidence            57999999987  6777765411100               0224688999999999988653210              


Q ss_pred             -----------CCCceeEEEEEEcCCCCcccceecccC------CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEE
Q 006979          216 -----------ALNSTTEIVAIALNGQNIQEPKVLVSG------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG  278 (623)
Q Consensus       216 -----------~~~~~~~L~~idl~~g~~~~~~~l~~~------~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~  278 (623)
                                 .......|+++|+++++.  .+.+...      ......+.|||||+.|++...+..    ....|+++
T Consensus       212 ~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~----~~~~i~~~  285 (723)
T 1xfd_A          212 TVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ----NVSILTLC  285 (723)
T ss_dssp             CCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS----CEEEEEEE
T ss_pred             cceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC----CeEEEEEE
Confidence                       011245899999998862  2555543      223456899999998876653322    35789999


Q ss_pred             EecCCCceeeeEEEcCCCCCcccc-CcCceeCCCCc-EEEE-EeCCCC----eeeEEEEe-cCCCe---EEEEeeccccc
Q 006979          279 YISENGDVYKRVCVAGFDPTIVES-PTEPKWSSKGE-LFFV-TDRKNG----FWNLHKWI-ESNNE---VLAIYSLDAEF  347 (623)
Q Consensus       279 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ws~DG~-l~~~-~~~~~g----~~~L~~~d-~~~~~---~~~l~~~~~~~  347 (623)
                      |++++.   ...++......|... ...+.|+|||+ |++. ++. .+    ..+||.+| ..+++   .+.|+.+..++
T Consensus       286 d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  361 (723)
T 1xfd_A          286 DATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP-QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV  361 (723)
T ss_dssp             ETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC-CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred             eCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc-cCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence            998763   233332211111111 14789999999 8887 554 55    67899999 56666   56665433322


Q ss_pred             cc-ccccccCcceeEEeecCCCCEEEEEEEEC--CeEEEEEEeCCCC-ceeecccC---CcceE--eeeecCCEEEEEEe
Q 006979          348 SR-PLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGH-SLSLLDIP---FTDID--NITLGNDCLFVEGA  418 (623)
Q Consensus       348 ~~-~~w~~~~~~~~~l~~s~~~~~l~~~~~~~--g~~~L~~~d~~~~-~~~~lt~~---~~~v~--~~~~~~~~~~~~~~  418 (623)
                      .. +.|+            ||++.|++.+.++  +..+||.++.+++ +.++|+..   ...+.  .++++++.+++..+
T Consensus       362 ~~~~~~s------------pdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          362 TKILAYD------------EKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             EEEEEEE------------TTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             EeeeEEc------------CCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            21 2333            4999999988776  7889999998775 45667642   22333  33889999999988


Q ss_pred             cCCCCCeEEEEEcCCCcceeeeeEEEeccCCC--CccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCC
Q 006979          419 SGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD--TLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPP  496 (623)
Q Consensus       419 s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~P  496 (623)
                      ++..|..++. +...++.     ..++..+..  ..+.+..+..++.+.+++. +| .++++++.|++  +++  ++++|
T Consensus       430 ~~~~p~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~~~~~~P~~--~~~--~~~~p  497 (723)
T 1xfd_A          430 GPGVPMVTVH-NTTDKKK-----MFDLETNEHVKKAINDRQMPKVEYRDIEID-DY-NLPMQILKPAT--FTD--TTHYP  497 (723)
T ss_dssp             SSSSCCEEEE-ETTTCCE-----EEEEECCHHHHHHHHTSCCCBCCBCCEEET-TE-EECCBEEBCSS--CCS--SSCEE
T ss_pred             CCCCCeEEEE-ECCCCCE-----EEEeccChhhhhhhhhccCCCceEEEEEcC-Cc-eEEEEEEeCCC--CCC--CCccC
Confidence            8888876554 6544432     122332211  1233455678888999987 78 99999999987  332  67789


Q ss_pred             EEEEecCCCCCcc-cCcC--CHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          497 LLVKSHGGPTSEA-RGIL--NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       497 liv~~hGg~~~~~-~~~~--~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      +||++||++.... ...|  ....+.++++||+|+.+|+||++++|+.+.......++...++|+.+++++|.+++.+|+
T Consensus       498 ~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~  577 (723)
T 1xfd_A          498 LLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDR  577 (723)
T ss_dssp             EEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEE
T ss_pred             EEEEEcCCCCccccCccccccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcCh
Confidence            9999999987643 2233  366778888999999999999999999998877888888899999999999999988999


Q ss_pred             CceEEEEcChHHHHHHHHh-cC----CCceeEEEecccCCCHH
Q 006979          574 KRLCITGGSAGGYTTLAAL-AF----RDTFKAGASLYGVSIPV  611 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~----~~~f~a~v~~~g~~d~~  611 (623)
                      +||+|+|+||||++++.++ .+    |++|+++|+.+|+.|+.
T Consensus       578 ~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~  620 (723)
T 1xfd_A          578 TRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFK  620 (723)
T ss_dssp             EEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTT
T ss_pred             hhEEEEEECHHHHHHHHHHHhccccCCCeEEEEEEccCCcchH
Confidence            9999999999999999999 77    89999999999999875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=100.00  E-value=2e-38  Score=361.94  Aligned_cols=472  Identities=14%  Similarity=0.106  Sum_probs=324.2

Q ss_pred             cCceEEcC-CCcEEEEeecCCC---CCceEEEEcCCCCCCCC---cccCCCCCccceeeeecCCceEEEeCC--EEEEEe
Q 006979           91 LGGTAVDG-HGRLIWLESRPTE---AGRGVLVKEPAKAGDEP---SDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSN  161 (623)
Q Consensus        91 ~~~~~~~~-~~~~~~l~~~~~e---~g~~~l~~~~~~~gg~~---~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~  161 (623)
                      +..+.||| |+.|.+...+...   .+...|+.++..+| +.   +.+ +.           +.....+++|  .|+|..
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g-~~~~~~~l-~~-----------~~~~~~~SPDG~~la~~~  128 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG-EFVRGNEL-PR-----------PIQYLCWSPVGSKLAYVY  128 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECCSSCC-CS-----------SBCCEEECSSTTCEEEEE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC-ccccceec-Cc-----------ccccceECCCCCEEEEEE
Confidence            56899999 8888887643210   01234666665532 32   222 11           1334556655  788884


Q ss_pred             CCCCcEEEEeCCCCCCCceecCCCCCCCC---------------eeecceeeCCCCCEEEEEEeccCCC-----------
Q 006979          162 YKDQRLYKHSIDSKDSSPLPITPDYGEPL---------------VSYADGIFDPRFNRYVTVREDRRQD-----------  215 (623)
Q Consensus       162 ~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~---------------~~~~d~~~sPdG~~l~~v~~~~~~~-----------  215 (623)
                        ++.||++++.++  ..++++.......               .+...+.|||||++|++.+.+....           
T Consensus       129 --~~~i~~~~~~~g--~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~  204 (719)
T 1z68_A          129 --QNNIYLKQRPGD--PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE  204 (719)
T ss_dssp             --TTEEEEESSTTS--CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS
T ss_pred             --CCeEEEEeCCCC--CcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence              567999999887  6777775311100               1124789999999999988653210           


Q ss_pred             --------------CCCceeEEEEEEcCCCCcccceecc------cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEE
Q 006979          216 --------------ALNSTTEIVAIALNGQNIQEPKVLV------SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL  275 (623)
Q Consensus       216 --------------~~~~~~~L~~idl~~g~~~~~~~l~------~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L  275 (623)
                                    .......|+++|+++++......+.      ........++|||||+ +++...++..   ...+|
T Consensus       205 ~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~---~~~~l  280 (719)
T 1z68_A          205 QYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQ---NVSVL  280 (719)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESST---TEEEE
T ss_pred             CCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEecccc---CeEEE
Confidence                          0123458999999987610001332      2333456789999975 6666434332   35689


Q ss_pred             EEEE----ecCCCceeeeEEE----cCCCCCccc--cCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecc
Q 006979          276 WVGY----ISENGDVYKRVCV----AGFDPTIVE--SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD  344 (623)
Q Consensus       276 ~v~d----~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~  344 (623)
                      +++|    ++++.   ...++    .+.+ .|..  ....+.|+|||+ +++......|..+|+.+|+++++.+.|+...
T Consensus       281 ~~~d~~~~~~~g~---~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~  356 (719)
T 1z68_A          281 SICDFREDWQTWD---CPKTQEHIEESRT-GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGK  356 (719)
T ss_dssp             EEEEECSSSSSEE---CCGGGEEEEECSS-SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSS
T ss_pred             EEEcccCCCCCCc---eEEEEecccccCC-ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCc
Confidence            9999    65542   12222    2222 2111  112789999999 7775443378899999999888877777543


Q ss_pred             cccccccccccCcceeEEeecCCCCEEEEEEEE----CCeEEEEEEeCCCC--ceeecccC----CcceEe--eeecCCE
Q 006979          345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ----NGRSYLGILDDFGH--SLSLLDIP----FTDIDN--ITLGNDC  412 (623)
Q Consensus       345 ~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~----~g~~~L~~~d~~~~--~~~~lt~~----~~~v~~--~~~~~~~  412 (623)
                      .++..+.         +.    +++.+++++..    .+..+||.++.+++  +.++|+..    ...+..  ++++++.
T Consensus       357 ~~v~~~~---------~~----d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~  423 (719)
T 1z68_A          357 WEAINIF---------RV----TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKY  423 (719)
T ss_dssp             SCEEEEE---------EE----CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSS
T ss_pred             eEEEEEE---------EE----eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCE
Confidence            3332211         11    67889998876    67889999998766  45677642    122332  3778888


Q ss_pred             EEEEEecCCCCCeEEEEEcCCCcceeeeeEEEeccCCC--CccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCC
Q 006979          413 LFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD--TLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQAS  490 (623)
Q Consensus       413 ~~~~~~s~~~~~~ly~~~l~~~~~~~lt~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~  490 (623)
                      +++..+++..| .++++++++++..+     ++..+..  ..+....++.++.++++.. + .+++++++.|++  +++ 
T Consensus       424 l~~~~s~~~~p-~~~l~d~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~P~~--~~~-  492 (719)
T 1z68_A          424 YALVCYGPGIP-ISTLHDGRTDQEIK-----ILEENKELENALKNIQLPKEEIKKLEVD-E-ITLWYKMILPPQ--FDR-  492 (719)
T ss_dssp             EEEEECCBSSC-EEEEECSSSCCEEE-----EEECCHHHHHHTTSBCCCEEEEEEEEET-T-EEEEEEEEECTT--CCS-
T ss_pred             EEEEcCCCCCC-eEEEEECCCCCEEE-----EeecchhhhhhhccccCCceEEEEEecC-C-eEEEEEEEeCCC--CCC-
Confidence            88888777666 68888888776433     2333321  1244556778899999986 6 899999999987  332 


Q ss_pred             CCCCCCEEEEecCCCCCcc-cCcCC-HHhHHH-HcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh
Q 006979          491 PEEKPPLLVKSHGGPTSEA-RGILN-LSIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG  567 (623)
Q Consensus       491 ~~~~~Pliv~~hGg~~~~~-~~~~~-~~~~~~-a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~  567 (623)
                       ++++|+||++||++.... ...+. .....+ +++||+|+.+|+||+++++..+.......++...++|+.+++++|.+
T Consensus       493 -~~~~p~vl~~hG~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~  571 (719)
T 1z68_A          493 -SKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIE  571 (719)
T ss_dssp             -SSCEEEEEEECCCTTBCCCCCCCCCCHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHT
T ss_pred             -CCCccEEEEECCCCCcCcccccchhhHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHh
Confidence             567899999999986643 22333 234444 58999999999999999999998888888988899999999999999


Q ss_pred             CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979          568 SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       568 ~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                      ++.+|++||+|+|+|+||++++.++ .+|++|+++|+.+|+.|+..
T Consensus       572 ~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~  617 (719)
T 1z68_A          572 MGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEY  617 (719)
T ss_dssp             TSCEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTT
T ss_pred             cCCCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHH
Confidence            9889999999999999999999999 77999999999999998753

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=100.00  E-value=7.6e-33  Score=309.80  Aligned_cols=486  Identities=12%  Similarity=0.040  Sum_probs=317.8

Q ss_pred             HHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCC----C-CCCCcccCC-CCCccc-eeeeecCCce-EEEeC
Q 006979           83 VVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAK----A-GDEPSDITP-KEYAVR-TTAQEYGGGA-FRIFG  154 (623)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~----~-gg~~~~l~p-~~~~~r-~~~~~~g~~~-~~~s~  154 (623)
                      .+.....++..+..- |+.+|+....+. ..+ .|||....    + ..+...+++ +..+.. ..-..+.+.+ +.+.+
T Consensus        65 ~~~~~~~ri~~p~~~-g~~~y~f~~d~~-~~~-gl~rrt~~~~~~~~~p~wevllD~d~l~~~~g~~~~~~g~~~~~~~~  141 (711)
T 4hvt_A           65 TIFYDQRKTPYGVIR-KGYVYNFWMDDK-NPQ-GLWRRTLVDNYSKDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQNP  141 (711)
T ss_dssp             HHHTCTTSCCCCEEE-TTEEEEEECCSS-CSS-CEEEEEEHHHHTSSSCCCEEEEEHHHHHHHHTSCEEEEEEEECSSST
T ss_pred             HHhccccccCCcEEE-CCEEEEEEecCC-CCc-EEEEEccchhcccCCCCcEEEeccccccccCCCcEEEeceeecCCCC
Confidence            344444466666555 888888876554 345 68875211    0 123444442 222211 1101111211 22233


Q ss_pred             CEEEEEeCCCC----cEEEEeCCCCCCCceecCCCCC--CC-----CeeecceeeCCCCCEEEEEEeccCC--CCCCcee
Q 006979          155 DTVIFSNYKDQ----RLYKHSIDSKDSSPLPITPDYG--EP-----LVSYADGIFDPRFNRYVTVREDRRQ--DALNSTT  221 (623)
Q Consensus       155 d~l~f~~~~~~----~l~~~d~~~g~~~~~~Lt~~~~--~~-----~~~~~d~~~sPdG~~l~~v~~~~~~--~~~~~~~  221 (623)
                      +.+++.-...|    .+..+|+.++    +.+..+..  ..     ..++..++|- |++.+++.+...+.  .......
T Consensus       142 ~~~~~~ls~~G~d~~~~~~~d~~t~----~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~~  216 (711)
T 4hvt_A          142 NRYLISMSFGGKDEMFFREWDLEKK----DFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYPN  216 (711)
T ss_dssp             TEEEEEEEETTCSEEEEEEEETTTT----EECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSBC
T ss_pred             CEEEEEeCCCCCceeEEEEEECCcC----CcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCCC
Confidence            45555432222    3888999865    23333211  00     1244555887 45556554432221  1223457


Q ss_pred             EEEEEEcCCCCcccceecccC--CCcccceeeCCCCCE---EEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCC
Q 006979          222 EIVAIALNGQNIQEPKVLVSG--SDFYAFPRMDPRGER---MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD  296 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~~~--~~~~~~p~wSPDG~~---la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~  296 (623)
                      .+|+..+.+...+. +.+..+  .++...+..++|+++   ..++.....   +..+++|+.+.+.... ...++....+
T Consensus       217 ~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~-~~~~l~~~~~  291 (711)
T 4hvt_A          217 SLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKD---FYNYDNYILDTKYKNL-KLQKINMPSD  291 (711)
T ss_dssp             EEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESS---SSCEEEEEEECSSSSC-EEEECCSCTT
T ss_pred             EEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecc---cCceeEEEEcCCCCCC-cceEeecCCc
Confidence            89999887754322 334332  345566778899985   234442211   2468899998764321 1223322222


Q ss_pred             CCccccCcCceeCCCCcEEEEEeCC--C-----CeeeEEEEecCCC--------eEEEEeecccccccccccccCcceeE
Q 006979          297 PTIVESPTEPKWSSKGELFFVTDRK--N-----GFWNLHKWIESNN--------EVLAIYSLDAEFSRPLWVFGINSYEI  361 (623)
Q Consensus       297 ~~~~~~~~~~~ws~DG~l~~~~~~~--~-----g~~~L~~~d~~~~--------~~~~l~~~~~~~~~~~w~~~~~~~~~  361 (623)
                             ..+.+..+|++++.....  .     ....|+.+|++++        +.+.+...+.+       .....+.+
T Consensus       292 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~  357 (711)
T 4hvt_A          292 -------ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN-------EVFNFIST  357 (711)
T ss_dssp             -------CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT-------EEEEEEEE
T ss_pred             -------ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC-------CeEEEEEE
Confidence                   234566788776654320  0     2346888887653        34443322111       11123333


Q ss_pred             EeecCCCCEEEEEEEECCeEEEEEEeCCCCc--eee-cccCC-cceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          362 IQSHGEKNLIACSYRQNGRSYLGILDDFGHS--LSL-LDIPF-TDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       362 l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~--~~~-lt~~~-~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                           .++.++++..+++..+|+++++.+++  .+. +..+. +.+..+  +.+++.+++..++...|+.+|++++. ++
T Consensus       358 -----~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~  431 (711)
T 4hvt_A          358 -----TKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE  431 (711)
T ss_dssp             -----CSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred             -----ECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence                 34578999999999999999987774  445 55543 344433  56778899999999999999999987 66


Q ss_pred             ceeeeeEEEeccCCCCccCCCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH
Q 006979          436 LKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL  515 (623)
Q Consensus       436 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~  515 (623)
                      .+.|+      ..+ ..+++..+ .++.+.+++. ||.+|+++++.|++.  ++  ++++|+||++|||++....+.+..
T Consensus       432 ~~~l~------~~~-~~~~~~~~-~~e~v~~~s~-DG~~i~~~l~~P~~~--~~--~~~~P~vl~~HGG~~~~~~~~~~~  498 (711)
T 4hvt_A          432 LKIIR------KAL-YSFDSENY-VLEQKEATSF-DGVKIPYFLVYKKGI--KF--DGKNPTLLEAYGGFQVINAPYFSR  498 (711)
T ss_dssp             EEEEE------CCS-SCCCGGGE-EEEEEEEECT-TSCEEEEEEEEETTC--CC--SSCCCEEEECCCCTTCCCCCCCCH
T ss_pred             EEEEe------cCC-cccCcccC-eeEEEEEECC-CCeEEEEEEEecCCC--CC--CCCccEEEEECCCCCCCCCCcccH
Confidence            44333      222 24555555 7899999998 999999999999873  22  678999999999998888888876


Q ss_pred             Hh-HHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-c
Q 006979          516 SI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-A  593 (623)
Q Consensus       516 ~~-~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~  593 (623)
                      .. +.|+++||+|+.+|+||++++|+.|.+.....++...++|+.++++||++++.+|++||+|+|+|+||+++++++ .
T Consensus       499 ~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~  578 (711)
T 4hvt_A          499 IKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQ  578 (711)
T ss_dssp             HHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHh
Confidence            65 599999999999999999999999999999999999999999999999999999999999999999999999999 7


Q ss_pred             CCCceeEEEecccCCCHHHhh
Q 006979          594 FRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       594 ~~~~f~a~v~~~g~~d~~~~~  614 (623)
                      +|++|+|+|+.+|++|+..+.
T Consensus       579 ~pd~f~a~V~~~pv~D~~~~~  599 (711)
T 4hvt_A          579 RPELFGAVACEVPILDMIRYK  599 (711)
T ss_dssp             CGGGCSEEEEESCCCCTTTGG
T ss_pred             CcCceEEEEEeCCccchhhhh
Confidence            899999999999999987654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.89  E-value=2.9e-21  Score=220.77  Aligned_cols=316  Identities=11%  Similarity=0.060  Sum_probs=209.2

Q ss_pred             cCCHHHHhccC--CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCC--ceEEEe
Q 006979           78 PLTADVVSGAS--KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIF  153 (623)
Q Consensus        78 ~~t~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~--~~~~~s  153 (623)
                      ++|+|.+....  .....+.|+|++.++...     +|...+|  +..+| +.+.++... ...    .+.+  ..+.++
T Consensus         4 ~~tl~~~~~~~~~~~~~~~~w~~dg~~~~~~-----~~~i~~~--~~~~~-~~~~~~~~~-~~~----~~~~~~~~~~~S   70 (740)
T 4a5s_A            4 TYTLTDYLKNTYRLKLYSLRWISDHEYLYKQ-----ENNILVF--NAEYG-NSSVFLENS-TFD----EFGHSINDYSIS   70 (740)
T ss_dssp             ECCHHHHHHTCSCCCCCCEEECSSSEEEEEE-----TTEEEEE--ETTTC-CEEEEECTT-TTT----TCCSCCCEEEEC
T ss_pred             ceeHHHHhcCcccccccccEECCCCcEEEEc-----CCcEEEE--ECCCC-ceEEEEech-hhh----hhcccccceEEC
Confidence            57889988753  334689999844444443     2554444  44433 444444322 100    1112  236777


Q ss_pred             CC--EEEEEeCC--------CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          154 GD--TVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       154 ~d--~l~f~~~~--------~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      +|  .|+|....        .+.+|++|+.++  ..++|+..    ......+.|||||++|+|+.+          ++|
T Consensus        71 pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~--~~~~l~~~----~~~~~~~~~SPdG~~la~~~~----------~~i  134 (740)
T 4a5s_A           71 PDGQFILLEYNYVKQWRHSYTASYDIYDLNKR--QLITEERI----PNNTQWVTWSPVGHKLAYVWN----------NDI  134 (740)
T ss_dssp             TTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECCSSCC----CTTEEEEEECSSTTCEEEEET----------TEE
T ss_pred             CCCCEEEEEECCeeeEEEccceEEEEEECCCC--cEEEcccC----CCcceeeEECCCCCEEEEEEC----------CeE
Confidence            77  67776532        156899999988  67777764    234567899999999999864          569


Q ss_pred             EEEEcCCCCcccceecccCCC-------------------cccceeeCCCCCEEEEEEecCCCCC---------------
Q 006979          224 VAIALNGQNIQEPKVLVSGSD-------------------FYAFPRMDPRGERMAWIEWHHPNMP---------------  269 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~-------------------~~~~p~wSPDG~~la~~~~~~~~~p---------------  269 (623)
                      |++|+.+++   .++|+.+..                   ....+.|||||++|||.+.+...++               
T Consensus       135 ~~~~~~~~~---~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~  211 (740)
T 4a5s_A          135 YVKIEPNLP---SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYP  211 (740)
T ss_dssp             EEESSTTSC---CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSC
T ss_pred             EEEECCCCc---eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCC
Confidence            999999988   777765332                   1124789999999999986655221               


Q ss_pred             -------------CCceEEEEEEecC---CCceeeeEEEc-----CCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeE
Q 006979          270 -------------WDKAELWVGYISE---NGDVYKRVCVA-----GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNL  327 (623)
Q Consensus       270 -------------~~~~~L~v~d~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L  327 (623)
                                   ....+|+++|+++   +..+...++..     +.+    .++..+.|+|||+ +++..++..+...|
T Consensus       212 ~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~wspdg~~~~~~~~r~~~~~~i  287 (740)
T 4a5s_A          212 KTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD----HYLCDVTWATQERISLQWLRRIQNYSVM  287 (740)
T ss_dssp             EEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSC----EEEEEEEEEETTEEEEEEEESSTTEEEE
T ss_pred             cceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCC----eEEEEEEEeCCCeEEEEEeCCCCCEEEE
Confidence                         1234789999987   53111223322     123    5678899999999 66666664566789


Q ss_pred             EEEecCCCe-------EEEEeeccccccccccccc--CcceeEEeecCCCCEEE-EEEEECCeEEEEEEeCCCCceeecc
Q 006979          328 HKWIESNNE-------VLAIYSLDAEFSRPLWVFG--INSYEIIQSHGEKNLIA-CSYRQNGRSYLGILDDFGHSLSLLD  397 (623)
Q Consensus       328 ~~~d~~~~~-------~~~l~~~~~~~~~~~w~~~--~~~~~~l~~s~~~~~l~-~~~~~~g~~~L~~~d~~~~~~~~lt  397 (623)
                      +.+|+++++       .+.+..+    ....|...  .....|.   |||+.++ +.++++|..+||++|.++++.++|+
T Consensus       288 ~~~d~~tg~~~~~~~~~~~l~~~----~~~~~v~~~~~~~p~fs---pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT  360 (740)
T 4a5s_A          288 DICDYDESSGRWNCLVARQHIEM----STTGWVGRFRPSEPHFT---LDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT  360 (740)
T ss_dssp             EEEEEETTTTEEEECGGGCEEEE----CSSSCSSSSSCCCCEEC---TTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred             EEEECCCCccccceeEEEEeeec----cCCceEccCcCCCceEc---CCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence            999998876       2233222    11223211  1122333   3888887 7888899999999999999999999


Q ss_pred             cCCcceEee-eecCCEEEEEEec---CCCCCeEEEEEcCCCcc
Q 006979          398 IPFTDIDNI-TLGNDCLFVEGAS---GVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       398 ~~~~~v~~~-~~~~~~~~~~~~s---~~~~~~ly~~~l~~~~~  436 (623)
                      .+.+.+..+ ..+++.+||++..   .....+||++++++++.
T Consensus       361 ~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~  403 (740)
T 4a5s_A          361 KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTK  403 (740)
T ss_dssp             CSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEE
T ss_pred             cCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCc
Confidence            988776655 5678899998864   24557899999988754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=2.5e-19  Score=187.71  Aligned_cols=309  Identities=11%  Similarity=0.075  Sum_probs=196.7

Q ss_pred             CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCCCcEE
Q 006979           92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQRLY  168 (623)
Q Consensus        92 ~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~~l~  168 (623)
                      .++.||| |+.|++...+   +|...||.++..++ +.+.++....        .......+++|  .|+|... +..||
T Consensus        39 ~~~~~SpDg~~l~~~~~~---~g~~~l~~~d~~~g-~~~~lt~~~~--------~~~~~~~~spdg~~l~~~~~-~~~l~  105 (388)
T 3pe7_A           39 YQKCFTRDGSKLLFGGAF---DGPWNYYLLDLNTQ-VATQLTEGRG--------DNTFGGFLSPDDDALFYVKD-GRNLM  105 (388)
T ss_dssp             TSCCBCTTSCEEEEEECT---TSSCEEEEEETTTC-EEEECCCSSC--------BCSSSCEECTTSSEEEEEET-TTEEE
T ss_pred             cCccCCCCCCEEEEEEcC---CCCceEEEEeCCCC-ceEEeeeCCC--------CCccceEEcCCCCEEEEEeC-CCeEE
Confidence            3488999 8889988753   46667888877643 5566664331        01112345544  7888764 45799


Q ss_pred             EEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC-------------CCCceeEEEEEEcCCCCccc
Q 006979          169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-------------ALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       169 ~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~-------------~~~~~~~L~~idl~~g~~~~  235 (623)
                      ++|+.++  +.+.+..... .........++|||+.++++..+....             .......|+++|+++++   
T Consensus       106 ~~d~~~g--~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---  179 (388)
T 3pe7_A          106 RVDLATL--EENVVYQVPA-EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---  179 (388)
T ss_dssp             EEETTTC--CEEEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---
T ss_pred             EEECCCC--cceeeeechh-hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---
Confidence            9999987  5665554310 011122334599999998776433210             01134789999999998   


Q ss_pred             ceecccCCCcccceeeCC-CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-
Q 006979          236 PKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-  313 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSP-DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-  313 (623)
                      .+.++........+.||| ||++|+|+......  ....+||+++++++    ..+.+......  ..+..+.|+|||+ 
T Consensus       180 ~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~--~~~~~l~~~d~~~~----~~~~l~~~~~~--~~~~~~~~spdg~~  251 (388)
T 3pe7_A          180 STVILQENQWLGHPIYRPYDDSTVAFCHEGPHD--LVDARMWLINEDGT----NMRKVKTHAEG--ESCTHEFWVPDGSA  251 (388)
T ss_dssp             EEEEEEESSCEEEEEEETTEEEEEEEEECSCTT--TSSCSEEEEETTSC----CCEESCCCCTT--EEEEEEEECTTSSC
T ss_pred             eEEeecCCccccccEECCCCCCEEEEEEecCCC--CCcceEEEEeCCCC----ceEEeeeCCCC--cccccceECCCCCE
Confidence            777877666678899999 99999999843110  01456999998766    23333332211  2355789999999 


Q ss_pred             EEEEEeCCCCee--eEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEE------CCeEEEEE
Q 006979          314 LFFVTDRKNGFW--NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ------NGRSYLGI  385 (623)
Q Consensus       314 l~~~~~~~~g~~--~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~------~g~~~L~~  385 (623)
                      |+|.+.. .+..  .|+++|+++++.+.++.... .....+.  .....|.+   ||+.|++...+      .+...||+
T Consensus       252 l~~~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~--~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          252 LVYVSYL-KGSPDRFIYSADPETLENRQLTSMPA-CSHLMSN--YDGSLMVG---DGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             EEEEEEE-TTCCCEEEEEECTTTCCEEEEEEECC-EEEEEEC--TTSSEEEE---EECCC------------CCCCEEEE
T ss_pred             EEEEecC-CCCCcceEEEEecCCCceEEEEcCCC-ceeeeec--CCCCeEcc---CCCcceeEeeeccccccCCCCEEEE
Confidence            8888876 4544  59999999998887765322 0011111  11122333   88888887654      66788999


Q ss_pred             EeCCCCceeecccCCc-----------ceE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          386 LDDFGHSLSLLDIPFT-----------DID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       386 ~d~~~~~~~~lt~~~~-----------~v~--~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      +|+++++.++|+....           .+.  .+++++++++|.... ....+||++++..+.
T Consensus       325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~-~g~~~l~~~~l~~~~  386 (388)
T 3pe7_A          325 FNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV-HGKPALYLATLPESV  386 (388)
T ss_dssp             EETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEECCGGG
T ss_pred             EeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC-CCceeEEEEECChhc
Confidence            9999999988886543           222  237888888887654 455689999987654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.83  E-value=1e-18  Score=185.60  Aligned_cols=243  Identities=13%  Similarity=0.125  Sum_probs=178.1

Q ss_pred             CCEEEEEeCC--C---CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          154 GDTVIFSNYK--D---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       154 ~d~l~f~~~~--~---~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      +++++|+...  +   +.|+++|++++  ..+.|+..    ......++|||||++|+++..+...      ..|+++|+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~~l~~~----~~~v~~~~~Spdg~~la~~s~~~~~------~~i~~~d~  210 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESGR------SALVIQTL  210 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC--SCEEEEEE----SSCEEEEEECTTSSEEEEEECTTSS------CEEEEEET
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC--CCEEEeCC----CCcceeeEEcCCCCEEEEEEecCCC------cEEEEEEC
Confidence            3467776543  2   57999999865  67777653    3456779999999999998875422      57999999


Q ss_pred             CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       229 ~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      .+++   .+.+.........++|||||++|+|.....     ....||++|+.++    ....+....    ..+..+.|
T Consensus       211 ~tg~---~~~l~~~~~~~~~~~~spdg~~la~~~~~~-----g~~~i~~~d~~~~----~~~~l~~~~----~~~~~~~~  274 (415)
T 2hqs_A          211 ANGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLASG----QIRQVTDGR----SNNTEPTW  274 (415)
T ss_dssp             TTCC---EEEEECCSSCEEEEEECTTSSEEEEEECTT-----SSCEEEEEETTTC----CEEECCCCS----SCEEEEEE
T ss_pred             CCCc---EEEeecCCCcccCEEEcCCCCEEEEEEecC-----CCceEEEEECCCC----CEEeCcCCC----CcccceEE
Confidence            9987   666665555667899999999999887433     2457999999876    233444433    45668999


Q ss_pred             CCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       309 s~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                      +|||+ |++.+++ .+..+||.+|+.+++.+.++........+.|++            +++.|++....++...|+++|
T Consensus       275 spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp------------dG~~l~~~~~~~g~~~i~~~d  341 (415)
T 2hqs_A          275 FPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQD  341 (415)
T ss_dssp             CTTSSEEEEEECT-TSSCEEEEEETTSSCCEECCCSSSEEEEEEECT------------TSSEEEEEEECSSCEEEEEEE
T ss_pred             CCCCCEEEEEECC-CCCcEEEEEECCCCCEEEEecCCCcccCeEECC------------CCCEEEEEECcCCceEEEEEE
Confidence            99999 8888876 577799999999888776654433333344443            899999988877888999999


Q ss_pred             CCCCceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          388 DFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       388 ~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      +++++.+.++... .+..+  ++++..+++..... ....||+++++++..++|
T Consensus       342 ~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~-~~~~l~~~d~~g~~~~~l  393 (415)
T 2hqs_A          342 LATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQG-MGSVLNLVSTDGRFKARL  393 (415)
T ss_dssp             TTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEET-TEEEEEEEETTSCCEEEC
T ss_pred             CCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCC-CccEEEEEECCCCcEEEe
Confidence            9999988887654 33333  77888887776543 345899999987765444

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=9.6e-18  Score=190.85  Aligned_cols=315  Identities=11%  Similarity=0.041  Sum_probs=202.3

Q ss_pred             CCcCCHHHHhccC--CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEE
Q 006979           76 KSPLTADVVSGAS--KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI  152 (623)
Q Consensus        76 ~s~~t~~~~~~~~--~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~  152 (623)
                      ..++|++.++...  .....+.|+| |+.+ +. .   .+|.  |+.++..+| +.+.++... ..    ..++..++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~~-~~-~---~dg~--i~~~d~~~g-~~~~~~~~~-~~----~~~~v~~~~~   68 (723)
T 1xfd_A            2 KKKVTVEDLFSEDFKIHDPEAKWISDTEFI-YR-E---QKGT--VRLWNVETN-TSTVLIEGK-KI----ESLRAIRYEI   68 (723)
T ss_dssp             CCCCCHHHHTCTTTCCCCCCCCBSSSSCBC-CC-C---SSSC--EEEBCGGGC-CCEEEECTT-TT----TTTTCSEEEE
T ss_pred             CccccHHHHhCCCCcccccccEEcCCCcEE-EE-e---CCCC--EEEEECCCC-cEEEEeccc-cc----cccccceEEE
Confidence            3568999998753  2357889999 5533 22 1   2354  555555543 444444322 00    0123556777


Q ss_pred             eCC--EEEEEeCC--------CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 006979          153 FGD--TVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (623)
Q Consensus       153 s~d--~l~f~~~~--------~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~  222 (623)
                      ++|  .|++....        ++.||++|++++  ..++|+.... .......++|||||++|+|+..          .+
T Consensus        69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~-~~~~~~~~~~SPdG~~la~~~~----------~~  135 (723)
T 1xfd_A           69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPPEV-SNAKLQYAGWGPKGQQLIFIFE----------NN  135 (723)
T ss_dssp             CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCCTTC-CSCCCSBCCBCSSTTCEEEEET----------TE
T ss_pred             CCCCCEEEEEecCccceeecceeeEEEEECCCC--ceEeccCCcc-ccccccccEECCCCCEEEEEEC----------Ce
Confidence            777  67777542        267999999987  5677775411 1123567899999999999875          46


Q ss_pred             EEEEEcCCCCcccceecccCC-Cc------------------ccceeeCCCCCEEEEEEecCCCC---------------
Q 006979          223 IVAIALNGQNIQEPKVLVSGS-DF------------------YAFPRMDPRGERMAWIEWHHPNM---------------  268 (623)
Q Consensus       223 L~~idl~~g~~~~~~~l~~~~-~~------------------~~~p~wSPDG~~la~~~~~~~~~---------------  268 (623)
                      |+++|+++++   .++++... ..                  ...+.|||||++|+|.+.+....               
T Consensus       136 i~~~~~~~g~---~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~  212 (723)
T 1xfd_A          136 IYYCAHVGKQ---AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPT  212 (723)
T ss_dssp             EEEESSSSSC---CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred             EEEEECCCCc---eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCc
Confidence            9999999987   66665432 11                  14689999999999998664211               


Q ss_pred             -----------CCCceEEEEEEecCCCceeeeEEEcCCCC--CccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCC
Q 006979          269 -----------PWDKAELWVGYISENGDVYKRVCVAGFDP--TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       269 -----------p~~~~~L~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~  334 (623)
                                 ......|+++|++++.   ....+.....  .....+..+.|+|||+ +++..++..+...|+++|+.+
T Consensus       213 ~~~~~~~~~G~~~~~~~l~~~d~~~~~---~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          213 VKPYHYPKAGSENPSISLHVIGLNGPT---HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT  289 (723)
T ss_dssp             CEEEECCBTTSCCCEEEEEEEESSSSC---CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred             ceeccCCCCCCCCCeeEEEEEECCCCc---eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence                       0113478999988763   1223332210  0004566799999999 545555534567899999999


Q ss_pred             CeEEEEeecc--ccc----ccccccccCcceeEEeecCCCCEEEEE-EEECC----eEEEEEEe-CCCCc---eeecccC
Q 006979          335 NEVLAIYSLD--AEF----SRPLWVFGINSYEIIQSHGEKNLIACS-YRQNG----RSYLGILD-DFGHS---LSLLDIP  399 (623)
Q Consensus       335 ~~~~~l~~~~--~~~----~~~~w~~~~~~~~~l~~s~~~~~l~~~-~~~~g----~~~L~~~d-~~~~~---~~~lt~~  399 (623)
                      ++.+.+....  ..+    ..+.|++            ||+.|++. +.+++    ..+||++| ..+++   .++|+.+
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~~~~sp------------dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~  357 (723)
T 1xfd_A          290 GVCTKKHEDESEAWLHRQNEEPVFSK------------DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG  357 (723)
T ss_dssp             CCEEEEEEEECSSCCCCCCCCCEECT------------TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS
T ss_pred             CcceEEEEeccCCEEeccCCCceEcC------------CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC
Confidence            8877665331  111    1344443            88888887 66777    78999999 67777   7888865


Q ss_pred             CcceE---eeeecCCEEEEEEecC-CCCCeEEEEEcCCC
Q 006979          400 FTDID---NITLGNDCLFVEGASG-VEPSSVAKVTLDDH  434 (623)
Q Consensus       400 ~~~v~---~~~~~~~~~~~~~~s~-~~~~~ly~~~l~~~  434 (623)
                      .+.+.   .++++++.+++.+... ....+||.++++++
T Consensus       358 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~  396 (723)
T 1xfd_A          358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN  396 (723)
T ss_dssp             SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred             CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence            55443   2488999998887543 24567999987765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=3.8e-18  Score=194.20  Aligned_cols=306  Identities=10%  Similarity=0.048  Sum_probs=196.5

Q ss_pred             cCCHHHHhccC--CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC
Q 006979           78 PLTADVVSGAS--KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD  155 (623)
Q Consensus        78 ~~t~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d  155 (623)
                      ++|++.++...  ..-..+.|+|++.+.+..    +++.  |+.++..+| +.+.++... ..    ..++..++++++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~----~d~~--i~~~~~~~g-~~~~~~~~~-~~----~~~~~~~~~~SpD   70 (719)
T 1z68_A            3 ALTLKDILNGTFSYKTFFPNWISGQEYLHQS----ADNN--IVLYNIETG-QSYTILSNR-TM----KSVNASNYGLSPD   70 (719)
T ss_dssp             CCCHHHHHHTTTCCCCCCCEESSSSEEEEEC----TTSC--EEEEESSSC-CEEEEECHH-HH----HTTTCSEEEECTT
T ss_pred             cccHHHHhcCcccCCCCccEECCCCeEEEEc----CCCC--EEEEEcCCC-cEEEEEccc-cc----cccceeeEEECCC
Confidence            47888887742  122478999844444332    1354  455555433 455554321 00    0123567778776


Q ss_pred             --EEEEEeCC--------CCcEEEEeCCCCCCCc---eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 006979          156 --TVIFSNYK--------DQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (623)
Q Consensus       156 --~l~f~~~~--------~~~l~~~d~~~g~~~~---~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~  222 (623)
                        .|+|....        ++.|+++|++++  ..   ++|+.       ....+.|||||++|+|+..          +.
T Consensus        71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g--~~~~~~~l~~-------~~~~~~~SPDG~~la~~~~----------~~  131 (719)
T 1z68_A           71 RQFVYLESDYSKLWRYSYTATYYIYDLSNG--EFVRGNELPR-------PIQYLCWSPVGSKLAYVYQ----------NN  131 (719)
T ss_dssp             SSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECCSSCCCS-------SBCCEEECSSTTCEEEEET----------TE
T ss_pred             CCeEEEEecCceeEEeecceEEEEEECCCC--ccccceecCc-------ccccceECCCCCEEEEEEC----------Ce
Confidence              67776542        467999999887  44   44542       2567899999999999853          47


Q ss_pred             EEEEEcCCCCcccceecccCCC-------------------cccceeeCCCCCEEEEEEecCCCCC--------------
Q 006979          223 IVAIALNGQNIQEPKVLVSGSD-------------------FYAFPRMDPRGERMAWIEWHHPNMP--------------  269 (623)
Q Consensus       223 L~~idl~~g~~~~~~~l~~~~~-------------------~~~~p~wSPDG~~la~~~~~~~~~p--------------  269 (623)
                      |+++|+++++   .++++....                   ....+.|||||++|+|.+.+...++              
T Consensus       132 i~~~~~~~g~---~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~  208 (719)
T 1z68_A          132 IYLKQRPGDP---PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPR  208 (719)
T ss_dssp             EEEESSTTSC---CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCE
T ss_pred             EEEEeCCCCC---cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcc
Confidence            9999999887   666653321                   1146899999999999987643211              


Q ss_pred             ------------CCceEEEEEEecCCCceeeeEE-----EcCCCCCccccCcCceeCCCCcEEEEE-eCCCCeeeEEEEe
Q 006979          270 ------------WDKAELWVGYISENGDVYKRVC-----VAGFDPTIVESPTEPKWSSKGELFFVT-DRKNGFWNLHKWI  331 (623)
Q Consensus       270 ------------~~~~~L~v~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ws~DG~l~~~~-~~~~g~~~L~~~d  331 (623)
                                  .....|+++|++++..+....+     +.+..    ..+..+.|+|||++++.. ++..+...|+.+|
T Consensus       209 ~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          209 TINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD----YYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             EEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC----EEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             ceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc----ceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence                        1345788999876521000111     11222    456789999998855543 4434567899999


Q ss_pred             ----cCCCeEEEEee---c--ccccc-----cccccccCcceeEEeecCCCCEEEE-EEEECCeEEEEEEeCCCCceeec
Q 006979          332 ----ESNNEVLAIYS---L--DAEFS-----RPLWVFGINSYEIIQSHGEKNLIAC-SYRQNGRSYLGILDDFGHSLSLL  396 (623)
Q Consensus       332 ----~~~~~~~~l~~---~--~~~~~-----~~~w~~~~~~~~~l~~s~~~~~l~~-~~~~~g~~~L~~~d~~~~~~~~l  396 (623)
                          +.+++.+.++.   +  ...+.     .+.|+            ||++.+++ .+.++|..+||++|+++++.++|
T Consensus       285 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s------------pdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~l  352 (719)
T 1z68_A          285 FREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFS------------YDAISYYKIFSDKDGYKHIHYIKDTVENAIQI  352 (719)
T ss_dssp             ECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEEC------------TTSSCEEEEEECTTSCEEEEEESSCSTTCEEC
T ss_pred             ccCCCCCCceEEEEecccccCCceEccccCCccEEC------------CCCCeEEEEEEccCCceEEEEEECCCCceEec
Confidence                87877665552   1  11111     33343            38888777 45578899999999999998899


Q ss_pred             ccCCcceEee--eecCCEEEEEEec---CCCCCeEEEEEcCCC
Q 006979          397 DIPFTDIDNI--TLGNDCLFVEGAS---GVEPSSVAKVTLDDH  434 (623)
Q Consensus       397 t~~~~~v~~~--~~~~~~~~~~~~s---~~~~~~ly~~~l~~~  434 (623)
                      +.+.+.+..+  . +++.++|.+..   .....+||.++++++
T Consensus       353 t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g  394 (719)
T 1z68_A          353 TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY  394 (719)
T ss_dssp             SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred             ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence            8776665544  5 88888888754   134568999998766

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.79  E-value=5.2e-17  Score=172.45  Aligned_cols=256  Identities=11%  Similarity=0.053  Sum_probs=178.2

Q ss_pred             CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCC--CcEEEEeCCC
Q 006979           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKD--QRLYKHSIDS  174 (623)
Q Consensus        99 ~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~--~~l~~~d~~~  174 (623)
                      ++++.++.....++....|+.++.. ++..+.+....         ....+.++++|  .+++.....  ..|+++|+.+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~---------~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t  212 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSP---------QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN  212 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEES---------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCC---------CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC
Confidence            6677777655322212456666554 22333333211         11344566655  677776543  4799999998


Q ss_pred             CCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCC
Q 006979          175 KDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPR  254 (623)
Q Consensus       175 g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPD  254 (623)
                      +  ..+.++..    ......++|||||++|+++......      ..||++|+.+++   .+.+.........+.||||
T Consensus       213 g--~~~~l~~~----~~~~~~~~~spdg~~la~~~~~~g~------~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spd  277 (415)
T 2hqs_A          213 G--AVRQVASF----PRHNGAPAFSPDGSKLAFALSKTGS------LNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPD  277 (415)
T ss_dssp             C--CEEEEECC----SSCEEEEEECTTSSEEEEEECTTSS------CEEEEEETTTCC---EEECCCCSSCEEEEEECTT
T ss_pred             C--cEEEeecC----CCcccCEEEcCCCCEEEEEEecCCC------ceEEEEECCCCC---EEeCcCCCCcccceEECCC
Confidence            7  66667653    3346678999999999987654322      679999999987   6777766666678999999


Q ss_pred             CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecC
Q 006979          255 GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES  333 (623)
Q Consensus       255 G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~  333 (623)
                      |++|++...+.     ...+||++|++++.    ...+....    ..+..+.|+|||+ |++.+.. .+...|+.+|+.
T Consensus       278 g~~l~~~s~~~-----g~~~i~~~d~~~~~----~~~l~~~~----~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~  343 (415)
T 2hqs_A          278 SQNLAFTSDQA-----GRPQVYKVNINGGA----PQRITWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLA  343 (415)
T ss_dssp             SSEEEEEECTT-----SSCEEEEEETTSSC----CEECCCSS----SEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETT
T ss_pred             CCEEEEEECCC-----CCcEEEEEECCCCC----EEEEecCC----CcccCeEECCCCCEEEEEECc-CCceEEEEEECC
Confidence            99999998432     24579999998762    23333332    3456789999999 7776665 567899999999


Q ss_pred             CCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEee
Q 006979          334 NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI  406 (623)
Q Consensus       334 ~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~  406 (623)
                      +++.+.+.... .+..+.|++            +++.|++.+..++...||++|++++..++|+.....+..+
T Consensus       344 ~~~~~~l~~~~-~~~~~~~sp------------dg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~  403 (415)
T 2hqs_A          344 TGGVQVLSSTF-LDETPSLAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFP  403 (415)
T ss_dssp             TCCEEECCCSS-SCEEEEECT------------TSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEE
T ss_pred             CCCEEEecCCC-CcCCeEEcC------------CCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCC
Confidence            98887766432 344445543            8999999998889999999999999899988776665544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.75  E-value=2.9e-16  Score=178.24  Aligned_cols=308  Identities=12%  Similarity=0.091  Sum_probs=194.5

Q ss_pred             ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCC--cccCCCC-C-------ccceeeeecCCceEEEeCC-EEE
Q 006979           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP--SDITPKE-Y-------AVRTTAQEYGGGAFRIFGD-TVI  158 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~--~~l~p~~-~-------~~r~~~~~~g~~~~~~s~d-~l~  158 (623)
                      .+..+.|+ ++.+++...    ++   | .++..+| +.  +.++... .       ....++...++.++++++| .++
T Consensus        27 ~~~~~~w~-g~~~~~~~~----~~---i-~~d~~tg-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~   96 (706)
T 2z3z_A           27 YVVGLQWM-GDNYVFIEG----DD---L-VFNKANG-KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVV   96 (706)
T ss_dssp             -CTTCEEE-TTEEEEEET----TE---E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEE
T ss_pred             cCCCCcCc-CCeEEEEeC----Cc---E-EEECCCC-cEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEE
Confidence            45678888 777666541    23   3 4455443 33  3333210 0       0001222345667888877 677


Q ss_pred             EEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC-----CCc
Q 006979          159 FSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-----QNI  233 (623)
Q Consensus       159 f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~-----g~~  233 (623)
                      +..  ++.|+++|+.++  ..++++..    .....+++|||||++|+++..          ..|+++|+++     ++ 
T Consensus        97 ~~~--~~~i~~~d~~~~--~~~~l~~~----~~~~~~~~~SpdG~~la~~~~----------~~i~v~~~~~~~~~~g~-  157 (706)
T 2z3z_A           97 LFT--QGGLVGFDMLAR--KVTYLFDT----NEETASLDFSPVGDRVAYVRN----------HNLYIARGGKLGEGMSR-  157 (706)
T ss_dssp             EEE--TTEEEEEETTTT--EEEEEECC----TTCCTTCEECTTSSEEEEEET----------TEEEEEECBCTTSCCCC-
T ss_pred             EEE--CCEEEEEECCCC--ceEEccCC----cccccCCcCCCCCCEEEEEEC----------CeEEEEecCcccccCCC-
Confidence            764  478999999887  66676654    334677999999999999643          5699999998     77 


Q ss_pred             ccceecccCCCc---------------ccceeeCCCCCEEEEEEecCCCC-------------------------CCCce
Q 006979          234 QEPKVLVSGSDF---------------YAFPRMDPRGERMAWIEWHHPNM-------------------------PWDKA  273 (623)
Q Consensus       234 ~~~~~l~~~~~~---------------~~~p~wSPDG~~la~~~~~~~~~-------------------------p~~~~  273 (623)
                        .++++.....               ...+.|||||++|++.+.+....                         .....
T Consensus       158 --~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~  235 (706)
T 2z3z_A          158 --AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV  235 (706)
T ss_dssp             --CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred             --cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence              6666543322               36789999999999998554321                         11346


Q ss_pred             EEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeC-CCCeeeEEEEecCCC-eEEEEeecccccccc
Q 006979          274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR-KNGFWNLHKWIESNN-EVLAIYSLDAEFSRP  350 (623)
Q Consensus       274 ~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~-~~g~~~L~~~d~~~~-~~~~l~~~~~~~~~~  350 (623)
                      .|+++|++++.   ...+.......  ..+..+.|+|||+ +++.+.. ......|+.+|+.++ +.+.+..+.    ..
T Consensus       236 ~l~~~d~~~~~---~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~----~~  306 (706)
T 2z3z_A          236 TVGIYHLATGK---TVYLQTGEPKE--KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET----DK  306 (706)
T ss_dssp             EEEEEETTTTE---EEECCCCSCTT--CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE----CS
T ss_pred             EEEEEECCCCc---eEeeccCCCCc--eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc----CC
Confidence            79999998762   22222221111  4567899999999 7665533 234568999999998 666665331    11


Q ss_pred             cccccCcceeEEeecC-CCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEe---eeecCCEEEEEEecCC-CCCe
Q 006979          351 LWVFGINSYEIIQSHG-EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN---ITLGNDCLFVEGASGV-EPSS  425 (623)
Q Consensus       351 ~w~~~~~~~~~l~~s~-~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~---~~~~~~~~~~~~~s~~-~~~~  425 (623)
                      .|........|.   | +++.+++++.++|..+||.++.+++.++.|+.+.+.+..   ++++++.+++.+.... ....
T Consensus       307 ~~~~~~~~~~~s---p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~  383 (706)
T 2z3z_A          307 HYVEPLHPLTFL---PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERH  383 (706)
T ss_dssp             SCCCCCSCCEEC---TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBE
T ss_pred             CeECccCCceee---cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEE
Confidence            222111222332   3 044577777788999999999888888899887665543   3788888888876432 2358


Q ss_pred             EEEEEcCCCcceeee
Q 006979          426 VAKVTLDDHKLKAVD  440 (623)
Q Consensus       426 ly~~~l~~~~~~~lt  440 (623)
                      ||.+++++++.+.|+
T Consensus       384 l~~~d~~~~~~~~l~  398 (706)
T 2z3z_A          384 FYCIDIKGGKTKDLT  398 (706)
T ss_dssp             EEEEETTCCCCEESC
T ss_pred             EEEEEcCCCCceecc
Confidence            999999888766654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=1.6e-17  Score=174.02  Aligned_cols=320  Identities=12%  Similarity=0.079  Sum_probs=198.3

Q ss_pred             cccCCCCCCCcCCHHH---HhccCCc-----cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcc
Q 006979           68 ITAPYGSWKSPLTADV---VSGASKR-----LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAV  138 (623)
Q Consensus        68 ~~~~~g~w~s~~t~~~---~~~~~~~-----~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~  138 (623)
                      ...+|++|..+.+-+.   +......     +..+.||| |+.++|+..+   ++...||.++..++ +.+.++....  
T Consensus         7 ~~~~~~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~---~g~~~l~~~d~~~~-~~~~l~~~~~--   80 (396)
T 3c5m_A            7 ITLNFETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF---DGNRNYYLLNLETQ-QAVQLTEGKG--   80 (396)
T ss_dssp             EECCEEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT---TSSCEEEEEETTTT-EEEECCCSSC--
T ss_pred             cchhhheeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec---CCCceEEEEECCCC-cEEEeecCCC--
Confidence            4578888877765433   2222222     67889999 8888888755   35556787776533 4455543320  


Q ss_pred             ceeeeecCCceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecc-------------------ee
Q 006979          139 RTTAQEYGGGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYAD-------------------GI  197 (623)
Q Consensus       139 r~~~~~~g~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d-------------------~~  197 (623)
                            .......+++|  .|+|.... ++||+++++++  ..++++...   .....+                   ..
T Consensus        81 ------~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~~--~~~~~~~~~---~~~~~~g~~l~~~~~~~~~~~~~~~~~  148 (396)
T 3c5m_A           81 ------DNTFGGFISTDERAFFYVKNE-LNLMKVDLETL--EEQVIYTVD---EEWKGYGTWVANSDCTKLVGIEILKRD  148 (396)
T ss_dssp             ------BCTTTCEECTTSSEEEEEETT-TEEEEEETTTC--CEEEEEECC---TTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred             ------CccccceECCCCCEEEEEEcC-CcEEEEECCCC--CcEEEEecc---cccCCCCCEEEeccCCccccccccccc
Confidence                  00111344544  78787654 46999999887  666666531   111111                   34


Q ss_pred             eCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCC-CCCEEEEEEecCCCCCCCceEEE
Q 006979          198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELW  276 (623)
Q Consensus       198 ~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSP-DG~~la~~~~~~~~~p~~~~~L~  276 (623)
                      |+|||+++++......    .....|+++|+++++   .+.+.........+.||| ||++|+|+.. ... .....+||
T Consensus       149 ~spdg~~~~~~~~~~~----~~~~~l~~~d~~~g~---~~~~~~~~~~~~~~~~sp~dg~~l~~~~~-~~~-~~~~~~l~  219 (396)
T 3c5m_A          149 WQPLTSWEKFAEFYHT----NPTCRLIKVDIETGE---LEVIHQDTAWLGHPIYRPFDDSTVGFCHE-GPH-DLVDARMW  219 (396)
T ss_dssp             CCCCCSHHHHHHHHHT----CCCEEEEEEETTTCC---EEEEEEESSCEEEEEEETTEEEEEEEEEC-SCS-SSCSCCCE
T ss_pred             cCCCCcceeeeeeccC----CCcceEEEEECCCCc---EEeeccCCcccccceECCCCCCEEEEEec-CCC-CCCCceEE
Confidence            6666666554321000    123789999999987   666665555567789999 8999999973 211 00125799


Q ss_pred             EEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeee--EEEEecCCCeEEEEeeccccccccccc
Q 006979          277 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN--LHKWIESNNEVLAIYSLDAEFSRPLWV  353 (623)
Q Consensus       277 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~--L~~~d~~~~~~~~l~~~~~~~~~~~w~  353 (623)
                      +++++++.    .+.+....+.  ..+..+.|+|||+ |++.+.. .+...  |+++|+.+++.+.+..... .. +.| 
T Consensus       220 ~~d~~~~~----~~~l~~~~~~--~~~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~-  289 (396)
T 3c5m_A          220 LVNEDGSN----VRKIKEHAEG--ESCTHEFWIPDGSAMAYVSYF-KGQTDRVIYKANPETLENEEVMVMPP-CS-HLM-  289 (396)
T ss_dssp             EEETTSCC----CEESSCCCTT--EEEEEEEECTTSSCEEEEEEE-TTTCCEEEEEECTTTCCEEEEEECCS-EE-EEE-
T ss_pred             EEECCCCc----eeEeeccCCC--ccccceEECCCCCEEEEEecC-CCCccceEEEEECCCCCeEEeeeCCC-CC-CCc-
Confidence            99987652    2233322111  3456789999999 8888766 45544  9999999888777764321 11 223 


Q ss_pred             ccCcceeEEeecC-CCCEEEEEEE-------------ECCeEEEEEEeCCCCceeecccCCcc-----------e--Eee
Q 006979          354 FGINSYEIIQSHG-EKNLIACSYR-------------QNGRSYLGILDDFGHSLSLLDIPFTD-----------I--DNI  406 (623)
Q Consensus       354 ~~~~~~~~l~~s~-~~~~l~~~~~-------------~~g~~~L~~~d~~~~~~~~lt~~~~~-----------v--~~~  406 (623)
                                 ++ +++.+++...             ..+...||++|+++++.++|+.....           .  ..+
T Consensus       290 -----------s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  358 (396)
T 3c5m_A          290 -----------SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSF  358 (396)
T ss_dssp             -----------ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred             -----------cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceE
Confidence                       23 6665554321             13557899999999888877754331           1  123


Q ss_pred             eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          407 TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       407 ~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      +++++.+++..... ...+||.+++++++.
T Consensus       359 s~dg~~l~~~s~~~-~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          359 TPNDDGVLFTSDFE-GVPAIYIADVPESYK  387 (396)
T ss_dssp             CTTSSEEEEEECTT-SSCEEEEEECCTTCC
T ss_pred             ccCCCeEEEEecCC-CCceEEEEEEccccc
Confidence            77888888876543 456899999988764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=5e-16  Score=154.87  Aligned_cols=232  Identities=10%  Similarity=0.039  Sum_probs=166.7

Q ss_pred             CCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC-CCcccceeccc
Q 006979          163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQEPKVLVS  241 (623)
Q Consensus       163 ~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~-g~~~~~~~l~~  241 (623)
                      .++.|+++|+.++  ..+.+...    ......+.|||||++|++...          ..|+++|+++ ++   ...+..
T Consensus        20 ~~~~i~~~d~~~~--~~~~~~~~----~~~v~~~~~spdg~~l~~~~~----------~~i~~~d~~~~~~---~~~~~~   80 (297)
T 2ojh_A           20 MRSSIEIFNIRTR--KMRVVWQT----PELFEAPNWSPDGKYLLLNSE----------GLLYRLSLAGDPS---PEKVDT   80 (297)
T ss_dssp             CCEEEEEEETTTT--EEEEEEEE----SSCCEEEEECTTSSEEEEEET----------TEEEEEESSSCCS---CEECCC
T ss_pred             cceeEEEEeCCCC--ceeeeccC----CcceEeeEECCCCCEEEEEcC----------CeEEEEeCCCCCC---ceEecc
Confidence            4567999999877  55555543    334567899999999988642          5699999998 87   566654


Q ss_pred             CC--CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEE
Q 006979          242 GS--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT  318 (623)
Q Consensus       242 ~~--~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~  318 (623)
                      ..  .....+.|||||++|++...+..    ....||.+++.++    ....+....     ....+.|+|||+ +++..
T Consensus        81 ~~~~~~~~~~~~spdg~~l~~~~~~~~----~~~~l~~~~~~~~----~~~~~~~~~-----~~~~~~~spdg~~l~~~~  147 (297)
T 2ojh_A           81 GFATICNNDHGISPDGALYAISDKVEF----GKSAIYLLPSTGG----TPRLMTKNL-----PSYWHGWSPDGKSFTYCG  147 (297)
T ss_dssp             TTCCCBCSCCEECTTSSEEEEEECTTT----SSCEEEEEETTCC----CCEECCSSS-----SEEEEEECTTSSEEEEEE
T ss_pred             ccccccccceEECCCCCEEEEEEeCCC----CcceEEEEECCCC----ceEEeecCC-----CccceEECCCCCEEEEEE
Confidence            43  45667899999999999874432    2567999988765    233333322     245679999999 77666


Q ss_pred             eCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeeccc
Q 006979          319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI  398 (623)
Q Consensus       319 ~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~  398 (623)
                      .. .+..+||.++..+++.+.+......+..+.|++            +++.+++....++..+||.++..++..+.+..
T Consensus       148 ~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~------------dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          148 IR-DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP------------DGRWIYFNSSRTGQMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             EE-TTEEEEEEEETTTCCEEECCCSSSCEEEEEECT------------TSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred             CC-CCceEEEEEECCCCcceEcccCCCccccceECC------------CCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence            65 677899999988887777765444444444543            88888888877888999999988888888876


Q ss_pred             CCcceEee--eecCCEEEEEEecCC-------CCCeEEEEEcCCCcceee
Q 006979          399 PFTDIDNI--TLGNDCLFVEGASGV-------EPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       399 ~~~~v~~~--~~~~~~~~~~~~s~~-------~~~~ly~~~l~~~~~~~l  439 (623)
                      ....+..+  +++++.+++......       ....|+++++++++.+.+
T Consensus       215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred             CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence            55444444  778888888776433       235799999998876544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=6.3e-16  Score=159.20  Aligned_cols=297  Identities=11%  Similarity=0.066  Sum_probs=184.1

Q ss_pred             CcCCHHHHhccCCccCceEEcCCCcEEEEeecCC---CCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEe
Q 006979           77 SPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF  153 (623)
Q Consensus        77 s~~t~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s  153 (623)
                      .+++++.+... ..+..+.++ |+.++|+...+.   +.....||.++..++ +.+.+  .           ......++
T Consensus         4 ~~~~~~~l~~~-~~~~~~~~d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l--~-----------~~~~~~~S   67 (347)
T 2gop_A            4 IEWNEKTFAKF-AYLSDPRTK-GELVAYVLTKANLKDNKYENTIVIENLKNN-ARRFI--E-----------NATMPRIS   67 (347)
T ss_dssp             ------CCCCS-CEEEEEEEE-TTEEEEEEEEEETTTTEEEEEEEEEETTTC-CEEEE--E-----------SCEEEEEC
T ss_pred             ccCCcccceee-EEcccceEC-CcEEEEEEeecCcccCCccceEEEEeCCCC-ceEEc--c-----------cCCCeEEC
Confidence            45677776643 456677775 889998864432   123566887776533 33333  1           13455666


Q ss_pred             CC--EEEEEeCCC----CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCC-----------
Q 006979          154 GD--TVIFSNYKD----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDA-----------  216 (623)
Q Consensus       154 ~d--~l~f~~~~~----~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~-----------  216 (623)
                      +|  .|+|.....    .+||+++++++  ..++++..    .. ...+.|||||++|++...+.....           
T Consensus        68 pDg~~la~~~~~~~~~~~~l~~~~~~~g--~~~~l~~~----~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~  140 (347)
T 2gop_A           68 PDGKKIAFMRANEEKKVSEIWVADLETL--SSKKILEA----KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAW  140 (347)
T ss_dssp             TTSSEEEEEEEETTTTEEEEEEEETTTT--EEEEEEEE----SE-EEEEEECTTSSEEEEEEECCCC---------CCCC
T ss_pred             CCCCEEEEEEeccCCCcceEEEEECCCC--ceEEEEcC----CC-ccceeECCCCCEEEEEEccCCCcCCcEEEccccee
Confidence            55  788876432    35999999887  67777764    33 678899999999999875311000           


Q ss_pred             -------CCceeEEEEEEcCCCCcccc-eecccCCCcccceeeCCCCCEEEEEEecCCCCC--CCceEEEEEEecCCCce
Q 006979          217 -------LNSTTEIVAIALNGQNIQEP-KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP--WDKAELWVGYISENGDV  286 (623)
Q Consensus       217 -------~~~~~~L~~idl~~g~~~~~-~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p--~~~~~L~v~d~~~~~~~  286 (623)
                             ......||++|+++++   . +.++. . ....+.|||||  |+|+.......+  ....+||+++  ++ . 
T Consensus       141 ~~g~~~~~~~~~~l~~~d~~~~~---~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~-~-  209 (347)
T 2gop_A          141 FDDLGFFDGEKTTFWIFDTESEE---VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DG-K-  209 (347)
T ss_dssp             ---------CEEEEEEEETTTTE---EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TT-E-
T ss_pred             ecCcccccCccceEEEEECCCCe---EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CC-c-
Confidence                   0124789999999887   5 66665 3 56678999999  777764332211  1145799988  33 1 


Q ss_pred             eeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCC----CeeeEEEEecCCCeEEEEeec-cccccc-ccccccCcce
Q 006979          287 YKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN----GFWNLHKWIESNNEVLAIYSL-DAEFSR-PLWVFGINSY  359 (623)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~----g~~~L~~~d~~~~~~~~l~~~-~~~~~~-~~w~~~~~~~  359 (623)
                       ...+..+ .     .  ...++|||+ +++.+....    ...+|+.+|  +++.+.++.. +..+.. +.|       
T Consensus       210 -~~~l~~~-~-----~--~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~-------  271 (347)
T 2gop_A          210 -EEKMFEK-V-----S--FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIK-------  271 (347)
T ss_dssp             -EEEEEEE-E-----S--EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEE-------
T ss_pred             -eEEeccC-c-----c--eeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEE-------
Confidence             2333322 2     1  123499999 888876521    246899998  6666666643 222221 222       


Q ss_pred             eEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          360 EIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       360 ~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                           + ++  ++++...++..+|| ++ + ++.+.+......+..+.... .++++.++...+.+||.++   ++.++|
T Consensus       272 -----s-dg--~~~~~~~~~~~~l~-~~-~-g~~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~---g~~~~l  336 (347)
T 2gop_A          272 -----D-GK--VYFTLFEEGSVNLY-IW-D-GEIKPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD---GEEKQL  336 (347)
T ss_dssp             -----T-TE--EEEEEEETTEEEEE-EE-S-SSEEEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES---SSEEEC
T ss_pred             -----c-Cc--EEEEEecCCcEEEE-Ec-C-CceEEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC---CcEEEe
Confidence                 2 43  88888889999999 98 4 56666665555566663334 6888888888888999987   555444


Q ss_pred             e
Q 006979          440 D  440 (623)
Q Consensus       440 t  440 (623)
                      |
T Consensus       337 t  337 (347)
T 2gop_A          337 T  337 (347)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=5.9e-16  Score=161.98  Aligned_cols=254  Identities=10%  Similarity=0.094  Sum_probs=167.4

Q ss_pred             EEEeCCEEEEEeCCCC--cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          150 FRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~--~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      |.+++..|+|....++  +||++|++++  ..++++...   ......+.|||||++|+|+..+         ..|+++|
T Consensus        43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~lt~~~---~~~~~~~~~spdg~~l~~~~~~---------~~l~~~d  108 (388)
T 3pe7_A           43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQLTEGR---GDNTFGGFLSPDDDALFYVKDG---------RNLMRVD  108 (388)
T ss_dssp             BCTTSCEEEEEECTTSSCEEEEEETTTC--EEEECCCSS---CBCSSSCEECTTSSEEEEEETT---------TEEEEEE
T ss_pred             CCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEEeeeCC---CCCccceEEcCCCCEEEEEeCC---------CeEEEEE
Confidence            3333447888876555  5999999988  788888751   1222357899999999998753         4699999


Q ss_pred             cCCCCcccceecccCC-Cccccee--eCCCCCEEEEEEecCCCC-C-------------CCceEEEEEEecCCCceeeeE
Q 006979          228 LNGQNIQEPKVLVSGS-DFYAFPR--MDPRGERMAWIEWHHPNM-P-------------WDKAELWVGYISENGDVYKRV  290 (623)
Q Consensus       228 l~~g~~~~~~~l~~~~-~~~~~p~--wSPDG~~la~~~~~~~~~-p-------------~~~~~L~v~d~~~~~~~~~~~  290 (623)
                      +++++   .+.+.... .+.....  ++|||+.|+....+.... |             .....|+++|+.++.   ...
T Consensus       109 ~~~g~---~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~  182 (388)
T 3pe7_A          109 LATLE---ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---STV  182 (388)
T ss_dssp             TTTCC---EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---EEE
T ss_pred             CCCCc---ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---eEE
Confidence            99987   55554332 2222223  499999998765332110 0             024789999998772   233


Q ss_pred             EEcCCCCCccccCcCceeCC-CCc-EEEEEeCCC--CeeeEEEEecCCCeEEEEeeccc--ccccccccccCcceeEEee
Q 006979          291 CVAGFDPTIVESPTEPKWSS-KGE-LFFVTDRKN--GFWNLHKWIESNNEVLAIYSLDA--EFSRPLWVFGINSYEIIQS  364 (623)
Q Consensus       291 ~~~~~~~~~~~~~~~~~ws~-DG~-l~~~~~~~~--g~~~L~~~d~~~~~~~~l~~~~~--~~~~~~w~~~~~~~~~l~~  364 (623)
                      +. ...    ..+..+.|+| ||+ ++|......  +..+||.+|+++++.+.++....  .+..+.|++          
T Consensus       183 l~-~~~----~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp----------  247 (388)
T 3pe7_A          183 IL-QEN----QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVP----------  247 (388)
T ss_dssp             EE-EES----SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECT----------
T ss_pred             ee-cCC----ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECC----------
Confidence            33 323    3456899999 999 878776411  25689999998888887775431  233445544          


Q ss_pred             cCCCCEEEEEEEECCeE--EEEEEeCCCCceeecccCCcc------e--EeeeecCCEEEEEEec-----CCCCCeEEEE
Q 006979          365 HGEKNLIACSYRQNGRS--YLGILDDFGHSLSLLDIPFTD------I--DNITLGNDCLFVEGAS-----GVEPSSVAKV  429 (623)
Q Consensus       365 s~~~~~l~~~~~~~g~~--~L~~~d~~~~~~~~lt~~~~~------v--~~~~~~~~~~~~~~~s-----~~~~~~ly~~  429 (623)
                        ||+.|++.+.+.+..  .||++|+++++.++++.....      .  ..++++++.+++....     ......||++
T Consensus       248 --dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~  325 (388)
T 3pe7_A          248 --DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF  325 (388)
T ss_dssp             --TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred             --CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence              899898888877765  499999999988777542221      1  1247888888876543     2455789999


Q ss_pred             EcCCCcceeee
Q 006979          430 TLDDHKLKAVD  440 (623)
Q Consensus       430 ~l~~~~~~~lt  440 (623)
                      ++++++.++|+
T Consensus       326 d~~~~~~~~l~  336 (388)
T 3pe7_A          326 NMKNGTQHRVA  336 (388)
T ss_dssp             ETTTTEEEEEE
T ss_pred             eccCCceEEec
Confidence            99998876554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=7.6e-15  Score=146.24  Aligned_cols=233  Identities=12%  Similarity=0.101  Sum_probs=159.6

Q ss_pred             CceEEEeCC--EEEEEeCCCCcEEEEeCCC-CCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDS-KDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       147 ~~~~~~s~d--~l~f~~~~~~~l~~~d~~~-g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      ..+..++++  .+++..  ++.|+++|+.+ +  ....+...  .......++.|+|||++|++...+...     ...|
T Consensus        44 v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~--~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~-----~~~l  112 (297)
T 2ojh_A           44 FEAPNWSPDGKYLLLNS--EGLLYRLSLAGDP--SPEKVDTG--FATICNNDHGISPDGALYAISDKVEFG-----KSAI  112 (297)
T ss_dssp             CEEEEECTTSSEEEEEE--TTEEEEEESSSCC--SCEECCCT--TCCCBCSCCEECTTSSEEEEEECTTTS-----SCEE
T ss_pred             eEeeEECCCCCEEEEEc--CCeEEEEeCCCCC--CceEeccc--cccccccceEECCCCCEEEEEEeCCCC-----cceE
Confidence            445666665  556553  56799999998 7  56666643  112456789999999999998754322     2789


Q ss_pred             EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      |.+++.++.   .+.+..... ...+.|||||++|+|.....     ....||.++++++    ....+....    ..+
T Consensus       113 ~~~~~~~~~---~~~~~~~~~-~~~~~~spdg~~l~~~~~~~-----~~~~l~~~~~~~~----~~~~~~~~~----~~~  175 (297)
T 2ojh_A          113 YLLPSTGGT---PRLMTKNLP-SYWHGWSPDGKSFTYCGIRD-----QVFDIYSMDIDSG----VETRLTHGE----GRN  175 (297)
T ss_dssp             EEEETTCCC---CEECCSSSS-EEEEEECTTSSEEEEEEEET-----TEEEEEEEETTTC----CEEECCCSS----SCE
T ss_pred             EEEECCCCc---eEEeecCCC-ccceEECCCCCEEEEEECCC-----CceEEEEEECCCC----cceEcccCC----Ccc
Confidence            999998887   666665443 55689999999999877443     2456888877655    233333333    355


Q ss_pred             cCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC----
Q 006979          304 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN----  378 (623)
Q Consensus       304 ~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~----  378 (623)
                      ..+.|+|||+ +++.... .+..+||.+++.++..+.+......+..+.|++            +++.|++.....    
T Consensus       176 ~~~~~s~dg~~l~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~------------dg~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          176 DGPDYSPDGRWIYFNSSR-TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP------------SGDKVVFVSYDADVFD  242 (297)
T ss_dssp             EEEEECTTSSEEEEEECT-TSSCEEEEEETTSSCEEECCCCSEEEEEEEECT------------TSSEEEEEEEETTCCS
T ss_pred             ccceECCCCCEEEEEecC-CCCccEEEECCCCCCcEEEecCCcccCCeEECC------------CCCEEEEEEcCCCCCc
Confidence            7899999999 6666655 577899999987877777765433333344443            888888887765    


Q ss_pred             ----CeEEEEEEeCCCCceeeccc---CCcceEee--eecCCEEEEEEecC
Q 006979          379 ----GRSYLGILDDFGHSLSLLDI---PFTDIDNI--TLGNDCLFVEGASG  420 (623)
Q Consensus       379 ----g~~~L~~~d~~~~~~~~lt~---~~~~v~~~--~~~~~~~~~~~~s~  420 (623)
                          +...|+++|+++++.+.+..   ....+..+  +++++.+++.....
T Consensus       243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                34789999999887765542   22233333  77888888877643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=9.4e-16  Score=172.68  Aligned_cols=258  Identities=12%  Similarity=0.070  Sum_probs=170.0

Q ss_pred             CceEEEeCCEEEEEeCC---CC--cEEEEeCCCCCCCceecCCCCCCCCe---eec--ceeeC--CCCCE-EEEEEeccC
Q 006979          147 GGAFRIFGDTVIFSNYK---DQ--RLYKHSIDSKDSSPLPITPDYGEPLV---SYA--DGIFD--PRFNR-YVTVREDRR  213 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~---~~--~l~~~d~~~g~~~~~~Lt~~~~~~~~---~~~--d~~~s--PdG~~-l~~v~~~~~  213 (623)
                      .....++++.++|+...   ++  .||.+ ..++  ..++|+........   .+.  .+.|+  |||++ |+|+.... 
T Consensus        26 ~~~~~~s~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~-  101 (662)
T 3azo_A           26 PACVGAVGDEVWWVAPRPAEAGRATLVRR-RADG--AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD-  101 (662)
T ss_dssp             CEEEEEETTEEEEEEEETTTTTEEEEEEE-CTTS--CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT-
T ss_pred             cceeEEcCCeEEEEecCcccCCcEEEEEE-CCCC--CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC-
Confidence            45667788888887642   22  47776 3444  67888875110000   011  34455  99999 88865431 


Q ss_pred             CCCCCceeEEEEEEcC--C-CCcccceeccc-----CCCcccceeeCCCCCEEEEEEecCCC-CC-CCceEEEEEEecCC
Q 006979          214 QDALNSTTEIVAIALN--G-QNIQEPKVLVS-----GSDFYAFPRMDPRGERMAWIEWHHPN-MP-WDKAELWVGYISEN  283 (623)
Q Consensus       214 ~~~~~~~~~L~~idl~--~-g~~~~~~~l~~-----~~~~~~~p~wSPDG~~la~~~~~~~~-~p-~~~~~L~v~d~~~~  283 (623)
                             .+||+++++  + +.   .++|+.     .......++|||||++|+|.+.++.. .+ ....+||+++++++
T Consensus       102 -------~~l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  171 (662)
T 3azo_A          102 -------QRLYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS  171 (662)
T ss_dssp             -------CCEEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred             -------CeEEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence                   569999998  5 66   677776     23345678999999999999865210 00 12468999999872


Q ss_pred             -----CceeeeEEEc-CCCCCccccCcCceeCCCCc-EEEEEeCCC----CeeeEEEEecC-CC---eEEEEeec-cccc
Q 006979          284 -----GDVYKRVCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKN----GFWNLHKWIES-NN---EVLAIYSL-DAEF  347 (623)
Q Consensus       284 -----~~~~~~~~~~-~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~----g~~~L~~~d~~-~~---~~~~l~~~-~~~~  347 (623)
                           +   ..+.+. ...    ..+..+.|||||+ |+|.+....    +...|+.+|++ ++   +.+.++.. ...+
T Consensus       172 ~~~~~~---~~~~l~~~~~----~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~  244 (662)
T 3azo_A          172 AAADRS---AVRELSDDAH----RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAI  244 (662)
T ss_dssp             TTTCGG---GSEESSCSCS----SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCE
T ss_pred             ccccCC---ceeEEEecCC----CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceE
Confidence                 2   233444 333    3556899999999 877775522    23689999998 56   56666654 3444


Q ss_pred             ccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcce---------Eee-eecCCEEEEEE
Q 006979          348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI---------DNI-TLGNDCLFVEG  417 (623)
Q Consensus       348 ~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v---------~~~-~~~~~~~~~~~  417 (623)
                      ..+.|++            ||+ +++++++++..+||++|+++++.++++.....+         ..+ ..+++++++..
T Consensus       245 ~~~~~sp------------dg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          245 AQAEWAP------------DGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             EEEEECT------------TSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             cceEECC------------CCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEE
Confidence            4555654            777 888888888889999999888888877543221         122 22456677776


Q ss_pred             ecCCCCCeEEEEEcCCCcceeee
Q 006979          418 ASGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       418 ~s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                      ..  ...+||.+++++++.++|+
T Consensus       312 ~~--~~~~l~~~d~~~~~~~~l~  332 (662)
T 3azo_A          312 GK--GAAVLGILDPESGELVDAA  332 (662)
T ss_dssp             BS--SSCEEEEEETTTTEEEECC
T ss_pred             Ec--CccEEEEEECCCCcEEEec
Confidence            55  5678999999888766554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.69  E-value=6e-15  Score=168.27  Aligned_cols=260  Identities=17%  Similarity=0.166  Sum_probs=170.5

Q ss_pred             ceEEEeCC--EEEEEeCCCC-----cEEEEeCCCCCCCceecCCCCCCCC---------------------eeecceeeC
Q 006979          148 GAFRIFGD--TVIFSNYKDQ-----RLYKHSIDSKDSSPLPITPDYGEPL---------------------VSYADGIFD  199 (623)
Q Consensus       148 ~~~~~s~d--~l~f~~~~~~-----~l~~~d~~~g~~~~~~Lt~~~~~~~---------------------~~~~d~~~s  199 (623)
                      ...++++|  .|++....++     .|+++|++++  ..++++......+                     .....+.||
T Consensus        40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            45566665  6788776455     7999999987  5655554310000                     235678999


Q ss_pred             CCCCEEEEEEeccCCCCCCceeEEEEEEcCCC---CcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEE
Q 006979          200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQ---NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW  276 (623)
Q Consensus       200 PdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g---~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~  276 (623)
                      |||++|++...          ..|+++|++++   .   .+++.........+.|||||++|+|.. +        ..|+
T Consensus       118 pDg~~l~~~~~----------~~i~~~d~~~~~~~~---~~~l~~~~~~~~~~~~SPDG~~la~~~-~--------~~i~  175 (741)
T 2ecf_A          118 PDAQRLLFPLG----------GELYLYDLKQEGKAA---VRQLTHGEGFATDAKLSPKGGFVSFIR-G--------RNLW  175 (741)
T ss_dssp             TTSSEEEEEET----------TEEEEEESSSCSTTS---CCBCCCSSSCEEEEEECTTSSEEEEEE-T--------TEEE
T ss_pred             CCCCEEEEEeC----------CcEEEEECCCCCcce---EEEcccCCcccccccCCCCCCEEEEEe-C--------CcEE
Confidence            99999999765          56999999988   6   667776656677899999999999996 2        1599


Q ss_pred             EEEecCCCceeeeEEEcCCCC-------Ccc-----ccCcCceeCCCCc-EEEEEeCCC---------------------
Q 006979          277 VGYISENGDVYKRVCVAGFDP-------TIV-----ESPTEPKWSSKGE-LFFVTDRKN---------------------  322 (623)
Q Consensus       277 v~d~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~ws~DG~-l~~~~~~~~---------------------  322 (623)
                      ++|++++.   ..++......       +|.     ..+..+.|||||+ |++.+....                     
T Consensus       176 ~~d~~~g~---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~  252 (741)
T 2ecf_A          176 VIDLASGR---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQR  252 (741)
T ss_dssp             EEETTTTE---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred             EEecCCCC---EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence            99998762   2222222210       000     0146799999999 887764311                     


Q ss_pred             --------CeeeEEEEecCC-CeEEEEeec---ccccccccccccC----------------------------------
Q 006979          323 --------GFWNLHKWIESN-NEVLAIYSL---DAEFSRPLWVFGI----------------------------------  356 (623)
Q Consensus       323 --------g~~~L~~~d~~~-~~~~~l~~~---~~~~~~~~w~~~~----------------------------------  356 (623)
                              +...|+.+|+++ ++.+.+...   ...+..+.| +..                                  
T Consensus       253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~  331 (741)
T 2ecf_A          253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET  331 (741)
T ss_dssp             CCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             cCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC
Confidence                    233788888887 665544311   111111122 111                                  


Q ss_pred             --------cceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEe---eeecCCEEEEEEecCC-CCC
Q 006979          357 --------NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN---ITLGNDCLFVEGASGV-EPS  424 (623)
Q Consensus       357 --------~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~---~~~~~~~~~~~~~s~~-~~~  424 (623)
                              ..+.|   +||++ +++++.++|..+||.++.+++ .+.|+.+.+.+..   ++++++.+++.+.... ...
T Consensus       332 ~~~~~~~~~~~~~---spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~  406 (741)
T 2ecf_A          332 SPTWVPLHNSLRF---LDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARES  406 (741)
T ss_dssp             CSSCCCCCSCCEE---CTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred             CCCcCCcCCceEE---CCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence                    12333   34776 777788888899999998877 8888877665543   4788888888876432 245


Q ss_pred             eEEEEEcCCCcceeee
Q 006979          425 SVAKVTLDDHKLKAVD  440 (623)
Q Consensus       425 ~ly~~~l~~~~~~~lt  440 (623)
                      +||.++++++..++|+
T Consensus       407 ~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          407 QIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             EEEEEETTCCCCEECC
T ss_pred             EEEEEEcCCCCeeecc
Confidence            7999988776666554

>3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A*

Probab=99.68  E-value=1.8e-16  Score=172.75  Aligned_cols=141  Identities=13%  Similarity=0.164  Sum_probs=117.0

Q ss_pred             CCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-----------------cC----CHH
Q 006979          458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----------------IL----NLS  516 (623)
Q Consensus       458 ~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-----------------~~----~~~  516 (623)
                      +...+.+.++.. ||.+|++++|.|++       .+++|+||+.||........                 .+    ...
T Consensus        38 ~~~~~~v~i~~~-DG~~L~a~l~~P~~-------~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  109 (560)
T 3iii_A           38 MIMEKDGTVEMR-DGEKLYINIFRPNK-------DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPD  109 (560)
T ss_dssp             EEEEEEEEEECT-TSCEEEEEEEECSS-------SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCC
T ss_pred             eEEEEEEEEECC-CCcEEEEEEEecCC-------CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCC
Confidence            345678899998 99999999999986       57899999999764321100                 11    123


Q ss_pred             hHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCC
Q 006979          517 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFR  595 (623)
Q Consensus       517 ~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~  595 (623)
                      +++|+++||+|+.+|+||+|+++..+.     .++..+.+|+.++++||.+++++| +||+++|+||||++++.++ .+|
T Consensus       110 ~~~la~~Gy~vv~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p  183 (560)
T 3iii_A          110 PGFWVPNDYVVVKVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNP  183 (560)
T ss_dssp             HHHHGGGTCEEEEEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCC
T ss_pred             HHHHHhCCCEEEEEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCC
Confidence            789999999999999999998877653     355678999999999999999888 8999999999999999988 678


Q ss_pred             CceeEEEecccCCCHHH
Q 006979          596 DTFKAGASLYGVSIPVI  612 (623)
Q Consensus       596 ~~f~a~v~~~g~~d~~~  612 (623)
                      +.++|+|+.+|++|+.+
T Consensus       184 ~~l~aiv~~~~~~d~~~  200 (560)
T 3iii_A          184 PHLKAMIPWEGLNDMYR  200 (560)
T ss_dssp             TTEEEEEEESCCCBHHH
T ss_pred             CceEEEEecCCcccccc
Confidence            89999999999999864

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.67  E-value=7.8e-15  Score=147.81  Aligned_cols=258  Identities=9%  Similarity=0.077  Sum_probs=179.5

Q ss_pred             CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCC-------------C
Q 006979           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD-------------Q  165 (623)
Q Consensus        99 ~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~-------------~  165 (623)
                      ++.|||.....    ...|++++.+ |...++|.+..           ..-+.+.++.|+|++..+             .
T Consensus        25 g~~iy~~n~~d----~~~ly~~~~d-g~~~~~l~~~~-----------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~   88 (302)
T 3s25_A           25 DGEVFFSNTND----NGRLYAMNID-GSNIHKLSNDT-----------AMYINADKNYVYYVRNNNQKITSQTFFSYDRN   88 (302)
T ss_dssp             TTEEEEEEGGG----TTEEEEEETT-SCSCEEEEEEE-----------EEEEEECSSEEEEEEECC------CCSSCCSE
T ss_pred             CCEEEEEeCCC----CceEEEEcCC-CCCCEEccCCc-----------eeeEEEcCCEEEEEECCCCcccccceeccCCC
Confidence            99999987542    2359999876 33566666533           234566777999997654             3


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~  245 (623)
                      .||+++++++  ..++|+..    ..    ..++|+|++|+|+......     ...||++++++..   .++|+.... 
T Consensus        89 ~Iy~i~~dg~--~~~~l~~~----~~----~~~s~~g~~Iy~~~~~~~~-----~~~Iy~~~~dGs~---~~~lt~~~~-  149 (302)
T 3s25_A           89 SLCRIKRNGH--GSTVLDPD----PC----IYASLIGNYIYYLHYDTQT-----ATSLYRIRIDGEE---KKKIKNHYL-  149 (302)
T ss_dssp             EEEEEETTSC--CCEEEECS----CE----EEEEEETTEEEEEEESSSS-----CEEEEEEETTSCC---CEEEESSCC-
T ss_pred             eEEEEeCCCC--cceEeecC----Cc----cEEEEeCCEEEEEeecCCC-----CceEEEEECCCCC---eEEEeCCCc-
Confidence            6999999987  67788764    22    2688999999998621111     2789999999877   677776532 


Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCe
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF  324 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~  324 (623)
                         +.++|||++|+|+...       ..+|++++++++   ..+++..+ .    .  ..|.| |+|+ |||+... .+ 
T Consensus       150 ---~~~~~~g~~iy~t~~g-------~~~Iy~~~l~g~---~~~~l~~~-~----~--~~~~~-P~g~~iy~t~~~-~~-  206 (302)
T 3s25_A          150 ---FTCNTSDRYFYYNNPK-------NGQLYRYDTASQ---SEALFYDC-N----C--YKPVV-LDDTNVYYMDVN-RD-  206 (302)
T ss_dssp             ---CCSEEETTEEEEECTT-------TCCEEEEETTTT---EEEEEECS-C----E--EEEEE-EETTEEEEEEGG-GT-
T ss_pred             ---eEeeEECCEEEEEeCC-------CceEEEEECCCC---CEEEEeCC-C----c--cceee-ecCCEEEEEEcC-CC-
Confidence               4589999999999631       345999999876   23444332 2    2  23444 9988 7776543 33 


Q ss_pred             eeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceE
Q 006979          325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID  404 (623)
Q Consensus       325 ~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~  404 (623)
                      .+|++.+++++..+.|+....    +.|.            ++++.|||+....+ .+|+++++++...++|....  +.
T Consensus       207 ~~I~~~~ldG~~~~~Lt~~~~----~~~~------------~~g~~Iy~~~~~~~-~~i~~~~~DG~~r~~l~~~~--~~  267 (302)
T 3s25_A          207 NAIVHVNINNPNPVVLTEANI----EHYN------------VYGSLIFYQRGGDN-PALCVVKNDGTGFKELAKGE--FC  267 (302)
T ss_dssp             TEEEEECSSSCCCEECSCSCE----EEEE------------EETTEEEEEECSSS-CEEEEEETTSCCCEEEEESC--EE
T ss_pred             cEEEEEECCCCCeEEEeCCCc----ceEE------------ECCCEEEEEECCCC-cEEEEEECCCCccEEeeCCc--cc
Confidence            789999999988887874321    2222            27889998765444 89999999998888887653  33


Q ss_pred             eeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          405 NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       405 ~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      .+...++++||+-...   ..||++.+++...
T Consensus       268 ~i~i~~d~Iy~td~~~---~~i~~~~~dGs~~  296 (302)
T 3s25_A          268 NINVTSQYVYFTDFVS---NKEYCTSTQNPDT  296 (302)
T ss_dssp             EEEECSSEEEEEETTT---CCEEEEESSSCCS
T ss_pred             eEEEeCCEEEEEECCC---CeEEEEECCCCCc
Confidence            5677899999986432   2499999877654

>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis}

Probab=99.67  E-value=1.1e-16  Score=168.74  Aligned_cols=147  Identities=12%  Similarity=0.004  Sum_probs=114.3

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc------------cCcCC----HHhHHHHcC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA------------RGILN----LSIQYWTSR  523 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~------------~~~~~----~~~~~~a~~  523 (623)
                      ..+.+.+++. +|..++++++.|++.      .++.|+||++||++....            ...|.    ..++.|+++
T Consensus        91 ~~e~v~~~~~-~g~~l~~~l~~P~~~------~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~  163 (398)
T 3nuz_A           91 RLEKWEFYPL-PKCVSTFLVLIPDNI------NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKE  163 (398)
T ss_dssp             EEEEEEECCS-TTBCEEEEEEEESSC------CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTT
T ss_pred             EEEEEEEEcC-CCcEEEEEEEeCCCC------CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHC
Confidence            4677889888 899999999999762      467899999999855322            01222    578999999


Q ss_pred             ceEEEEECCCCCCCCchhHH-------------H---hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHH
Q 006979          524 GWAFVDVNYGGSTGYGREFR-------------E---RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT  587 (623)
Q Consensus       524 G~~v~~~d~rGs~~~g~~~~-------------~---~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~  587 (623)
                      ||+|+++|+||.|+.+....             .   .....++...+.|+.++++||.+++.+|++||+|+|+|+||++
T Consensus       164 Gy~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~  243 (398)
T 3nuz_A          164 GYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEP  243 (398)
T ss_dssp             TCEEEEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHH
T ss_pred             CCEEEEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHH
Confidence            99999999999876543220             0   0112333345689999999999999999999999999999999


Q ss_pred             HHHHhcCCCceeEEEecccCCCHHHh
Q 006979          588 TLAALAFRDTFKAGASLYGVSIPVII  613 (623)
Q Consensus       588 ~~~~~~~~~~f~a~v~~~g~~d~~~~  613 (623)
                      ++.++..+++++|+|+..+++.+...
T Consensus       244 a~~~aa~~~~i~a~v~~~~~~~~~~~  269 (398)
T 3nuz_A          244 MMVLGTLDTSIYAFVYNDFLCQTQER  269 (398)
T ss_dssp             HHHHHHHCTTCCEEEEESCBCCHHHH
T ss_pred             HHHHHhcCCcEEEEEEecccccchhh
Confidence            99888666789999998887776654

>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A

Probab=99.66  E-value=2.8e-16  Score=155.56  Aligned_cols=127  Identities=15%  Similarity=0.149  Sum_probs=85.6

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      ||.+|++++|.|.+       ..+.|+||++||++.......+...++.|+++||+|+.+|+||+|.++...........
T Consensus        39 dG~~i~g~l~~P~~-------~~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~~~~~~~~~  111 (259)
T 4ao6_A           39 DGRTVPGVYWSPAE-------GSSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDV  111 (259)
T ss_dssp             TTEEEEEEEEEESS-------SCCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC-------------CCG
T ss_pred             CCeEEEEEEEeCCC-------CCCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCCcccccccchh
Confidence            89999999999987       56789999999997665556677889999999999999999998876544322111111


Q ss_pred             ---------------ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          551 ---------------GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       551 ---------------g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                                     ....+.|..++++++...  +|++||+++|+|+||++++.++ ..|+ ++|+|...+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pr-i~Aav~~~~~  181 (259)
T 4ao6_A          112 VGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKR-IKVALLGLMG  181 (259)
T ss_dssp             GGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTT-EEEEEEESCC
T ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCc-eEEEEEeccc
Confidence                           112356788888888654  7889999999999999999998 5665 5666655443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.66  E-value=1.4e-15  Score=159.20  Aligned_cols=244  Identities=10%  Similarity=0.124  Sum_probs=157.5

Q ss_pred             CCEEEEEeCCC--CcEEEEeCCCCCCCceecCCCCCCCCeeec-ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          154 GDTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYA-DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       154 ~d~l~f~~~~~--~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~-d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      +..|+|....+  .+||+++++++  ..++++..    ..... .+.|||||++|+|+..+         .+||++|+++
T Consensus        47 G~~l~~~~~~~g~~~l~~~d~~~~--~~~~l~~~----~~~~~~~~~~spdg~~l~~~~~~---------~~l~~~d~~~  111 (396)
T 3c5m_A           47 GKKLLFAGDFDGNRNYYLLNLETQ--QAVQLTEG----KGDNTFGGFISTDERAFFYVKNE---------LNLMKVDLET  111 (396)
T ss_dssp             SCEEEEEECTTSSCEEEEEETTTT--EEEECCCS----SCBCTTTCEECTTSSEEEEEETT---------TEEEEEETTT
T ss_pred             CCEEEEEEecCCCceEEEEECCCC--cEEEeecC----CCCccccceECCCCCEEEEEEcC---------CcEEEEECCC
Confidence            34778876543  36999999887  67788764    22323 37899999999998753         3699999999


Q ss_pred             CCcccceecccCC-Ccccc-------------------eeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeE
Q 006979          231 QNIQEPKVLVSGS-DFYAF-------------------PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV  290 (623)
Q Consensus       231 g~~~~~~~l~~~~-~~~~~-------------------p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~  290 (623)
                      ++   .+.+.... .+...                   +.|||||++|++.......   ....|+++|++++.   ...
T Consensus       112 ~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~---~~~~l~~~d~~~g~---~~~  182 (396)
T 3c5m_A          112 LE---EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN---PTCRLIKVDIETGE---LEV  182 (396)
T ss_dssp             CC---EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC---CCEEEEEEETTTCC---EEE
T ss_pred             CC---cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC---CcceEEEEECCCCc---EEe
Confidence            87   56665422 21111                   4566777666654310111   35679999998763   223


Q ss_pred             EEcCCCCCccccCcCceeCC-CCc-EEEEEeCCCCe----eeEEEEecCCCeEEEEeecc--cccccccccccCcceeEE
Q 006979          291 CVAGFDPTIVESPTEPKWSS-KGE-LFFVTDRKNGF----WNLHKWIESNNEVLAIYSLD--AEFSRPLWVFGINSYEII  362 (623)
Q Consensus       291 ~~~~~~~~~~~~~~~~~ws~-DG~-l~~~~~~~~g~----~~L~~~d~~~~~~~~l~~~~--~~~~~~~w~~~~~~~~~l  362 (623)
                      +. ...    ..+..+.|+| ||+ ++|+++.  +.    .+|+.+|+++++.+.+....  ..+..+.|+         
T Consensus       183 ~~-~~~----~~~~~~~~sp~dg~~l~~~~~~--~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s---------  246 (396)
T 3c5m_A          183 IH-QDT----AWLGHPIYRPFDDSTVGFCHEG--PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWI---------  246 (396)
T ss_dssp             EE-EES----SCEEEEEEETTEEEEEEEEECS--CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEEC---------
T ss_pred             ec-cCC----cccccceECCCCCCEEEEEecC--CCCCCCceEEEEECCCCceeEeeccCCCccccceEEC---------
Confidence            33 222    3456889999 788 8887753  22    58999999887777766421  122333444         


Q ss_pred             eecCCCCEEEEEEEECCeEE--EEEEeCCCCceeecccCCcceEeeee-cCCEEEEEEec------------CCCCCeEE
Q 006979          363 QSHGEKNLIACSYRQNGRSY--LGILDDFGHSLSLLDIPFTDIDNITL-GNDCLFVEGAS------------GVEPSSVA  427 (623)
Q Consensus       363 ~~s~~~~~l~~~~~~~g~~~--L~~~d~~~~~~~~lt~~~~~v~~~~~-~~~~~~~~~~s------------~~~~~~ly  427 (623)
                         |+++.|++.+.+.+...  |+++|+++++.+.+.........+++ +++.+++....            ......||
T Consensus       247 ---pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~  323 (396)
T 3c5m_A          247 ---PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLY  323 (396)
T ss_dssp             ---TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCCEEE
T ss_pred             ---CCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCCcEE
Confidence               38888999888777645  99999999888776542221122366 77755553322            11236899


Q ss_pred             EEEcCCCcceeee
Q 006979          428 KVTLDDHKLKAVD  440 (623)
Q Consensus       428 ~~~l~~~~~~~lt  440 (623)
                      ++++++++.++|+
T Consensus       324 ~~d~~~~~~~~l~  336 (396)
T 3c5m_A          324 VLNTKAKSAQKLC  336 (396)
T ss_dssp             EEETTTTBCCEEE
T ss_pred             EEecccCceEEcc
Confidence            9999988876554

>1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21

Probab=99.64  E-value=2.5e-16  Score=175.09  Aligned_cols=142  Identities=15%  Similarity=0.200  Sum_probs=112.9

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCc----cc-CcCC-HHh---HHHHcCceEEEEE
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE----AR-GILN-LSI---QYWTSRGWAFVDV  530 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~----~~-~~~~-~~~---~~~a~~G~~v~~~  530 (623)
                      ..+.+.++.. ||..|+++++.|++       .+++|+||++||.....    .. ..+. ...   ++|+++||+|+.+
T Consensus        24 ~~~~v~i~~~-DG~~L~~~~~~P~~-------~~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~   95 (615)
T 1mpx_A           24 IKREVMIPMR-DGVKLHTVIVLPKG-------AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQ   95 (615)
T ss_dssp             EEEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred             EEEEEEEECC-CCCEEEEEEEeCCC-------CCCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEE
Confidence            4567888888 99999999999976       36789999999753221    01 0111 122   8999999999999


Q ss_pred             CCCCCCCCchhHHHhh-----ccCCccchHHHHHHHHHHHHhC-CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEe
Q 006979          531 NYGGSTGYGREFRERL-----LGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGAS  603 (623)
Q Consensus       531 d~rGs~~~g~~~~~~~-----~~~~g~~~~~D~~~~~~~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~  603 (623)
                      |+||+++++..+....     ...++..+.+|+.++++||.++ ++.| .||+|+|+||||+++++++ .+++.|+|+|+
T Consensus        96 D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~  174 (615)
T 1mpx_A           96 DVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVP  174 (615)
T ss_dssp             ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEE
T ss_pred             CCCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEe
Confidence            9999998887654321     1233448899999999999998 8887 5999999999999999998 67899999999


Q ss_pred             cccCCCH
Q 006979          604 LYGVSIP  610 (623)
Q Consensus       604 ~~g~~d~  610 (623)
                      .+|++|+
T Consensus       175 ~~~~~d~  181 (615)
T 1mpx_A          175 ESPMIDG  181 (615)
T ss_dssp             ESCCCCT
T ss_pred             cCCcccc
Confidence            9999995

>2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A

Probab=99.64  E-value=3.1e-16  Score=175.06  Aligned_cols=143  Identities=18%  Similarity=0.218  Sum_probs=113.7

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc-cCcC--------CHHh-HHHHcCceEEEE
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGIL--------NLSI-QYWTSRGWAFVD  529 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~-~~~~--------~~~~-~~~a~~G~~v~~  529 (623)
                      ..+.+.++.. ||..|++++|.|++       .+++|+||++||...... ...+        .... ++|+++||+|+.
T Consensus        36 ~~~~v~i~~~-DG~~L~~~l~~P~~-------~~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~  107 (652)
T 2b9v_A           36 IKREVMVPMR-DGVKLYTVIVIPKN-------ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVF  107 (652)
T ss_dssp             EEEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEE
T ss_pred             EEEEEEEECC-CCcEEEEEEEecCC-------CCCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEE
Confidence            3467888888 99999999999976       357899999996532110 0011        1123 899999999999


Q ss_pred             ECCCCCCCCchhHHHhh--ccCC---ccchHHHHHHHHHHHHhC-CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEE
Q 006979          530 VNYGGSTGYGREFRERL--LGRW---GIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGA  602 (623)
Q Consensus       530 ~d~rGs~~~g~~~~~~~--~~~~---g~~~~~D~~~~~~~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v  602 (623)
                      +|+||+++++..+....  .+++   +..+.+|+.++++||.++ +++| .||+|+|+||||+++++++ .+++.|+|+|
T Consensus       108 ~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v  186 (652)
T 2b9v_A          108 QDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAA  186 (652)
T ss_dssp             EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEE
T ss_pred             EecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEE
Confidence            99999999888764321  1223   357899999999999999 8888 5999999999999999998 6889999999


Q ss_pred             ecccCCCHH
Q 006979          603 SLYGVSIPV  611 (623)
Q Consensus       603 ~~~g~~d~~  611 (623)
                      +.+|++|+.
T Consensus       187 ~~~~~~d~~  195 (652)
T 2b9v_A          187 PESPMVDGW  195 (652)
T ss_dssp             EEEECCCTT
T ss_pred             ecccccccc
Confidence            999999974

>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482}

Probab=99.63  E-value=6.3e-16  Score=162.63  Aligned_cols=146  Identities=13%  Similarity=0.025  Sum_probs=112.8

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc------------CcCC----HHhHHHHcC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR------------GILN----LSIQYWTSR  523 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~------------~~~~----~~~~~~a~~  523 (623)
                      ..+.+.+++. +|..++++++.|.+.      .++.|+||++||.......            ..+.    ..++.|+++
T Consensus        86 ~~e~v~~~~~-~g~~l~~~l~~P~~~------~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~  158 (391)
T 3g8y_A           86 ILEKWEFYPF-PKSVSTFLVLKPEHL------KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKE  158 (391)
T ss_dssp             EEEEEEECCS-TTCCEEEEEEEETTC------CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTT
T ss_pred             EEEEEEEEcC-CCCEEEEEEEeCCCC------CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHC
Confidence            4577888887 899999999999762      4578999999997543210            1122    578899999


Q ss_pred             ceEEEEECCCCCCCCchh----------HHHh------hccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHH
Q 006979          524 GWAFVDVNYGGSTGYGRE----------FRER------LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT  587 (623)
Q Consensus       524 G~~v~~~d~rGs~~~g~~----------~~~~------~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~  587 (623)
                      ||+|+++|+||.|+.+..          +...      ....++...+.|+.++++||.+++.+|++||+|+|+|+||++
T Consensus       159 G~~Vl~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~  238 (391)
T 3g8y_A          159 GYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEP  238 (391)
T ss_dssp             TCEEEECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHH
T ss_pred             CCEEEEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHH
Confidence            999999999998765532          1110      011222334589999999999999999999999999999999


Q ss_pred             HHHHhcCCCceeEEEecccCCCHHH
Q 006979          588 TLAALAFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       588 ~~~~~~~~~~f~a~v~~~g~~d~~~  612 (623)
                      ++.++..+++++++|+..+++++..
T Consensus       239 al~~a~~~~~i~a~v~~~~~~~~~~  263 (391)
T 3g8y_A          239 MMVLGVLDKDIYAFVYNDFLCQTQE  263 (391)
T ss_dssp             HHHHHHHCTTCCEEEEESCBCCHHH
T ss_pred             HHHHHHcCCceeEEEEccCCCCccc
Confidence            9998876778999999999988854

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.61  E-value=8.3e-15  Score=162.41  Aligned_cols=247  Identities=13%  Similarity=0.025  Sum_probs=157.9

Q ss_pred             ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEE
Q 006979           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK  169 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~  169 (623)
                      ....+.|||+ ++.+............||..+....+....++... ..+       ..++.++++.++|+....+.+++
T Consensus        66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~-------~~~~s~dg~~~~~~s~~~~~~~l  136 (582)
T 3o4h_A           66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PMR-------ILSGVDTGEAVVFTGATEDRVAL  136 (582)
T ss_dssp             EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SBE-------EEEEEECSSCEEEEEECSSCEEE
T ss_pred             ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-Cce-------eeeeCCCCCeEEEEecCCCCceE
Confidence            3456788876 55555443122345668877661113444444332 111       23566677777777656666778


Q ss_pred             EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccce
Q 006979          170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFP  249 (623)
Q Consensus       170 ~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p  249 (623)
                      +|++++  ..++++..    ..  .++.|||||++|++...+...     ...||++|+++++   .++|+........|
T Consensus       137 ~d~~~g--~~~~l~~~----~~--~~~~~spDG~~la~~~~~~~~-----~~~i~~~d~~~g~---~~~l~~~~~~~~~~  200 (582)
T 3o4h_A          137 YALDGG--GLRELARL----PG--FGFVSDIRGDLIAGLGFFGGG-----RVSLFTSNLSSGG---LRVFDSGEGSFSSA  200 (582)
T ss_dssp             EEEETT--EEEEEEEE----SS--CEEEEEEETTEEEEEEEEETT-----EEEEEEEETTTCC---CEEECCSSCEEEEE
T ss_pred             EEccCC--cEEEeecC----CC--ceEEECCCCCEEEEEEEcCCC-----CeEEEEEcCCCCC---ceEeecCCCccccc
Confidence            899887  67777753    22  678999999999988776432     2569999999998   77887776667889


Q ss_pred             eeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce--------eCCCCcEEEEEeCC
Q 006979          250 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK--------WSSKGELFFVTDRK  321 (623)
Q Consensus       250 ~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------ws~DG~l~~~~~~~  321 (623)
                      +|||||++|+ .. +..    ....||++|++++.   .. ++.+.+    ..+..+.        |+|||++++.... 
T Consensus       201 ~~SpDG~~l~-~~-~~~----~~~~i~~~d~~~~~---~~-~~~~~~----~~~~~~~~~~~~~~~~spdg~~~~~~~~-  265 (582)
T 3o4h_A          201 SISPGMKVTA-GL-ETA----REARLVTVDPRDGS---VE-DLELPS----KDFSSYRPTAITWLGYLPDGRLAVVARR-  265 (582)
T ss_dssp             EECTTSCEEE-EE-ECS----SCEEEEEECTTTCC---EE-ECCCSC----SHHHHHCCSEEEEEEECTTSCEEEEEEE-
T ss_pred             eECCCCCEEE-Ec-cCC----CeeEEEEEcCCCCc---EE-EccCCC----cChhhhhhccccceeEcCCCcEEEEEEc-
Confidence            9999999998 33 332    23579999998773   23 444443    3445566        9999987777766 


Q ss_pred             CCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeec
Q 006979          322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL  396 (623)
Q Consensus       322 ~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~l  396 (623)
                      ++..+||.+    ++... +.. ..+.         .+.+.    +++.++..+.......||++|.++ +.++|
T Consensus       266 ~g~~~l~~~----g~~~~-~~~-~~v~---------~~~~s----dg~~l~~~s~~~~p~~l~~~d~~~-~~~~l  320 (582)
T 3o4h_A          266 EGRSAVFID----GERVE-APQ-GNHG---------RVVLW----RGKLVTSHTSLSTPPRIVSLPSGE-PLLEG  320 (582)
T ss_dssp             TTEEEEEET----TEEEC-CCS-SEEE---------EEEEE----TTEEEEEEEETTEEEEEEEETTCC-EEECC
T ss_pred             CCcEEEEEE----CCeec-cCC-CceE---------EEEec----CCEEEEEEcCCCCCCeEEEEcCCC-ceEEE
Confidence            677777765    44332 111 1111         22332    555554444445567899999876 66666

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.61  E-value=1.2e-13  Score=156.58  Aligned_cols=260  Identities=10%  Similarity=-0.002  Sum_probs=168.2

Q ss_pred             EEEeCCEEEEEeCCC----CcEEEEeCCCCCCCceecCCCC---CCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 006979          150 FRIFGDTVIFSNYKD----QRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~----~~l~~~d~~~g~~~~~~Lt~~~---~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~  222 (623)
                      ..+.++.++|.....    ..||+.+..++  ..++|+...   +........++|||||++|+|.....+.    ....
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~----~~~~  148 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESG--QEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAA----DEAV  148 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTS--CCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTC----SCCE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCC--CcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCC----ceEE
Confidence            345677888886544    34899998766  677776531   0112356789999999999998775432    1268


Q ss_pred             EEEEEcCCCCcccce---ecccCCCcccceeeCCCCCEEEEEEecCCCC-----CCCceEEEEEEecCCCceeeeEEEcC
Q 006979          223 IVAIALNGQNIQEPK---VLVSGSDFYAFPRMDPRGERMAWIEWHHPNM-----PWDKAELWVGYISENGDVYKRVCVAG  294 (623)
Q Consensus       223 L~~idl~~g~~~~~~---~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~-----p~~~~~L~v~d~~~~~~~~~~~~~~~  294 (623)
                      |+++|+++|+   ..   .+. +.. ...++|||||+.|+|.+.+.++.     .+...+||+.++.++.. ....+...
T Consensus       149 i~v~dl~tg~---~~~~~~~~-~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-~~~lv~~~  222 (695)
T 2bkl_A          149 LHVIDVDSGE---WSKVDVIE-GGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS-KDTVVHER  222 (695)
T ss_dssp             EEEEETTTCC---BCSSCCBS-CCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG-GCEEEECC
T ss_pred             EEEEECCCCC---CcCCcccC-ccc-ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch-hceEEEec
Confidence            9999999987   32   121 111 25789999999999998765310     01245799999987632 11233333


Q ss_pred             CCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEE
Q 006979          295 FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC  373 (623)
Q Consensus       295 ~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~  373 (623)
                      .+..  .....+.|||||+ |++.+....+..+||.++..+++.+.|+........+.|          +   +++ +|+
T Consensus       223 ~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~----------~---~g~-l~~  286 (695)
T 2bkl_A          223 TGDP--TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA----------W---KDR-FYV  286 (695)
T ss_dssp             CCCT--TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE----------E---TTE-EEE
T ss_pred             CCCC--EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe----------c---CCc-EEE
Confidence            2211  2445789999999 877776622677899998777777888754322222222          1   777 888


Q ss_pred             EEEEC-CeEEEEEEeCCCCc---eeecccC--CcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCccee
Q 006979          374 SYRQN-GRSYLGILDDFGHS---LSLLDIP--FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA  438 (623)
Q Consensus       374 ~~~~~-g~~~L~~~d~~~~~---~~~lt~~--~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~  438 (623)
                      .++.+ +..+|+++|+++++   ++.|..+  ...+..+...++.+++..... ...+|+.++++++..+.
T Consensus       287 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~d-g~~~l~~~~~~g~~~~~  356 (695)
T 2bkl_A          287 LTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKD-ATSEVRVATLKGKPVRT  356 (695)
T ss_dssp             EECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEET-TEEEEEEEETTCCEEEE
T ss_pred             EECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEEC-CEEEEEEEeCCCCeeEE
Confidence            77644 46789999998776   3555543  333555544477777776543 34579999987654433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.61  E-value=8.2e-14  Score=140.31  Aligned_cols=238  Identities=13%  Similarity=0.166  Sum_probs=167.7

Q ss_pred             CceEEEeCCEEEEEeCC-CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC-CC----Cce
Q 006979          147 GGAFRIFGDTVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-AL----NST  220 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~-~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~-~~----~~~  220 (623)
                      ++-++.+++.|+|++.. .+.||+++.++.  .+++|+..    .  .  --++++|++|+|+....... ..    ...
T Consensus        18 ~g~~~~~g~~iy~~n~~d~~~ly~~~~dg~--~~~~l~~~----~--~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~   87 (302)
T 3s25_A           18 AGLFCESDGEVFFSNTNDNGRLYAMNIDGS--NIHKLSND----T--A--MYINADKNYVYYVRNNNQKITSQTFFSYDR   87 (302)
T ss_dssp             TTCEEEETTEEEEEEGGGTTEEEEEETTSC--SCEEEEEE----E--E--EEEEECSSEEEEEEECC------CCSSCCS
T ss_pred             ceEEEEeCCEEEEEeCCCCceEEEEcCCCC--CCEEccCC----c--e--eeEEEcCCEEEEEECCCCcccccceeccCC
Confidence            45577788899999754 457999999876  78888864    1  1  23689999999987653210 00    124


Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      ..||++++++++   .++|.....    ..|+|+|++|+|....+.    ....||++++++.    ..+.+....    
T Consensus        88 ~~Iy~i~~dg~~---~~~l~~~~~----~~~s~~g~~Iy~~~~~~~----~~~~Iy~~~~dGs----~~~~lt~~~----  148 (302)
T 3s25_A           88 NSLCRIKRNGHG---STVLDPDPC----IYASLIGNYIYYLHYDTQ----TATSLYRIRIDGE----EKKKIKNHY----  148 (302)
T ss_dssp             EEEEEEETTSCC---CEEEECSCE----EEEEEETTEEEEEEESSS----SCEEEEEEETTSC----CCEEEESSC----
T ss_pred             CeEEEEeCCCCc---ceEeecCCc----cEEEEeCCEEEEEeecCC----CCceEEEEECCCC----CeEEEeCCC----
Confidence            789999999987   667765432    368999999999973222    3678999999876    233444333    


Q ss_pred             ccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       301 ~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                      .    +.++++|+ |||..+   +..+|++++++++..+.|..+..  ..+          +.   |+++.|||+...++
T Consensus       149 ~----~~~~~~g~~iy~t~~---g~~~Iy~~~l~g~~~~~l~~~~~--~~~----------~~---P~g~~iy~t~~~~~  206 (302)
T 3s25_A          149 L----FTCNTSDRYFYYNNP---KNGQLYRYDTASQSEALFYDCNC--YKP----------VV---LDDTNVYYMDVNRD  206 (302)
T ss_dssp             C----CCSEEETTEEEEECT---TTCCEEEEETTTTEEEEEECSCE--EEE----------EE---EETTEEEEEEGGGT
T ss_pred             c----eEeeEECCEEEEEeC---CCceEEEEECCCCCEEEEeCCCc--cce----------ee---ecCCEEEEEEcCCC
Confidence            1    34577888 888754   56689999998888777754211  111          11   28899999876555


Q ss_pred             eEEEEEEeCCCCceeecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979          380 RSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       380 ~~~L~~~d~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                       .+|++++++++..+.|+...  +..+++.+++||+.....  ...|+++++++...++|.
T Consensus       207 -~~I~~~~ldG~~~~~Lt~~~--~~~~~~~g~~Iy~~~~~~--~~~i~~~~~DG~~r~~l~  262 (302)
T 3s25_A          207 -NAIVHVNINNPNPVVLTEAN--IEHYNVYGSLIFYQRGGD--NPALCVVKNDGTGFKELA  262 (302)
T ss_dssp             -TEEEEECSSSCCCEECSCSC--EEEEEEETTEEEEEECSS--SCEEEEEETTSCCCEEEE
T ss_pred             -cEEEEEECCCCCeEEEeCCC--cceEEECCCEEEEEECCC--CcEEEEEECCCCccEEee
Confidence             79999999999988887542  334688999998875432  278999999998766554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.61  E-value=5.3e-14  Score=144.73  Aligned_cols=206  Identities=13%  Similarity=0.164  Sum_probs=141.2

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~  270 (623)
                      .++.++.+  ||++|+|+..............||++|+++++   .++|    .....|.|||||++|+|+..+...   
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l----~~~~~~~~SpDg~~la~~~~~~~~---   82 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA---RRFI----ENATMPRISPDGKKIAFMRANEEK---   82 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---EEEE----ESCEEEEECTTSSEEEEEEEETTT---
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc---eEEc----ccCCCeEECCCCCEEEEEEeccCC---
Confidence            34567888  99999998764322112245889999999987   6666    335679999999999999865421   


Q ss_pred             CceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCC-----------------------CCeee
Q 006979          271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK-----------------------NGFWN  326 (623)
Q Consensus       271 ~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~-----------------------~g~~~  326 (623)
                      ...+||+++++++    ..+.+....    . +..+.|+|||+ |+|.+...                       .+..+
T Consensus        83 ~~~~l~~~~~~~g----~~~~l~~~~----~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  153 (347)
T 2gop_A           83 KVSEIWVADLETL----SSKKILEAK----N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTT  153 (347)
T ss_dssp             TEEEEEEEETTTT----EEEEEEEES----E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEE
T ss_pred             CcceEEEEECCCC----ceEEEEcCC----C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccce
Confidence            2567999999876    223333323    3 66899999999 88876420                       11468


Q ss_pred             EEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC------C-eEEEEEEeCCCCceeeccc
Q 006979          327 LHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN------G-RSYLGILDDFGHSLSLLDI  398 (623)
Q Consensus       327 L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~------g-~~~L~~~d~~~~~~~~lt~  398 (623)
                      |+++|+.+++. +.++. . .+..+.|++            ++  ++++...+      . ..+||.+|  +++.++|+.
T Consensus       154 l~~~d~~~~~~~~~l~~-~-~~~~~~~sp------------dg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~  215 (347)
T 2gop_A          154 FWIFDTESEEVIEEFEK-P-RFSSGIWHR------------DK--IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE  215 (347)
T ss_dssp             EEEEETTTTEEEEEEEE-E-TTCEEEEET------------TE--EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE
T ss_pred             EEEEECCCCeEEeeecC-C-CcccccCCC------------Ce--EEEEEecccccccccccccEEEeC--CCceEEecc
Confidence            99999999887 77765 3 445555553            65  66666543      2 67899999  677777776


Q ss_pred             CCcceEeeeecCCEEEEEEecCC----CCCeEEEEEcCCCccee
Q 006979          399 PFTDIDNITLGNDCLFVEGASGV----EPSSVAKVTLDDHKLKA  438 (623)
Q Consensus       399 ~~~~v~~~~~~~~~~~~~~~s~~----~~~~ly~~~l~~~~~~~  438 (623)
                      . ..+..++++++++++......    ...+||.++  +++.+.
T Consensus       216 ~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~  256 (347)
T 2gop_A          216 K-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG  256 (347)
T ss_dssp             E-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred             C-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence            5 444444888998888875432    346899998  555433

>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41

Probab=99.60  E-value=2.9e-15  Score=157.33  Aligned_cols=137  Identities=17%  Similarity=0.085  Sum_probs=108.4

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY  538 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~  538 (623)
                      ...+.+.++.  +|..|+++++.|++       .++.|+||++||+...  ...+....+.|+++||+|+.+|+||.|.+
T Consensus       125 ~~~~~v~~~~--dg~~i~~~l~~p~~-------~~~~P~vl~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~rG~G~s  193 (386)
T 2jbw_A          125 PPAERHELVV--DGIPMPVYVRIPEG-------PGPHPAVIMLGGLEST--KEESFQMENLVLDRGMATATFDGPGQGEM  193 (386)
T ss_dssp             SCEEEEEEEE--TTEEEEEEEECCSS-------SCCEEEEEEECCSSCC--TTTTHHHHHHHHHTTCEEEEECCTTSGGG
T ss_pred             CCeEEEEEEe--CCEEEEEEEEcCCC-------CCCCCEEEEeCCCCcc--HHHHHHHHHHHHhCCCEEEEECCCCCCCC
Confidence            4678888887  69999999999986       4667999999988432  22334458889999999999999996543


Q ss_pred             chhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCHHHh
Q 006979          539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVII  613 (623)
Q Consensus       539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~~~~  613 (623)
                         .   ..........+|+.+++++|.+++.+|++||+|+|+|+||++++.++.++++|+++|+. |+.|+...
T Consensus       194 ---~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~a~v~~-~~~~~~~~  261 (386)
T 2jbw_A          194 ---F---EYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISW-GGFSDLDY  261 (386)
T ss_dssp             ---T---TTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEE-SCCSCSTT
T ss_pred             ---C---CCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcCCcceeEEEEe-ccCChHHH
Confidence               0   11112223346789999999999999999999999999999999999448899999999 99887543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=2.7e-13  Score=153.94  Aligned_cols=258  Identities=9%  Similarity=-0.002  Sum_probs=164.1

Q ss_pred             EeCCEEEEEeCCC----CcEEEEeCCCCCCCceecCCCC---CCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          152 IFGDTVIFSNYKD----QRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       152 ~s~d~l~f~~~~~----~~l~~~d~~~g~~~~~~Lt~~~---~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      +.++.++|.....    +.||+++..++  ..+.|.+..   .........++|||||++|+|...+.+.    ...+|+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~----~~~~i~  154 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEG--EARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGS----DWVTIK  154 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTS--CCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTC----SCEEEE
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCC--CcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCC----ceEEEE
Confidence            5666888876443    25899988766  555443320   0112356789999999999998775432    125899


Q ss_pred             EEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC--------CCCceEEEEEEecCCCceeeeEEEcCCC
Q 006979          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM--------PWDKAELWVGYISENGDVYKRVCVAGFD  296 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~--------p~~~~~L~v~d~~~~~~~~~~~~~~~~~  296 (623)
                      ++|+++|+   ...++........+.|||||++|+|.+.+.+..        .+...+||+.++.++.. ....+..+.+
T Consensus       155 v~d~~tg~---~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~-~~~~v~~~~~  230 (710)
T 2xdw_A          155 FMKVDGAK---ELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS-EDILCAEFPD  230 (710)
T ss_dssp             EEETTTTE---EEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-GCEEEECCTT
T ss_pred             EEECCCCC---CCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc-cceEEeccCC
Confidence            99999987   444322221245689999999999998665410        12345799999976631 1123333322


Q ss_pred             CCccccCcCceeCCCCc-EEEEEeCCCC-eeeEEEEecCC------C--eEEEEeecccccccccccccCcceeEEeecC
Q 006979          297 PTIVESPTEPKWSSKGE-LFFVTDRKNG-FWNLHKWIESN------N--EVLAIYSLDAEFSRPLWVFGINSYEIIQSHG  366 (623)
Q Consensus       297 ~~~~~~~~~~~ws~DG~-l~~~~~~~~g-~~~L~~~d~~~------~--~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~  366 (623)
                      ..  .....+.|||||+ |++.+.+..+ ...||.+|+++      +  +.+.|+.......          ..+.   +
T Consensus       231 ~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~s---~  295 (710)
T 2xdw_A          231 EP--KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY----------DYVT---N  295 (710)
T ss_dssp             CT--TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE----------EEEE---E
T ss_pred             CC--eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE----------EEEe---c
Confidence            01  2345789999999 7777765222 56899999876      5  4666664321111          1122   2


Q ss_pred             CCCEEEEEEEECC-eEEEEEEeCCCCc---eeecccCCc--ceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          367 EKNLIACSYRQNG-RSYLGILDDFGHS---LSLLDIPFT--DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       367 ~~~~l~~~~~~~g-~~~L~~~d~~~~~---~~~lt~~~~--~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      +++.|++.++.++ ..+|+++|++++.   ++.|..+..  .+..+ ..+++.+++..... ...+|+++++.+|+
T Consensus       296 dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~-g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          296 EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD-VKNTLQLHDLATGA  370 (710)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET-TEEEEEEEETTTCC
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC-CEEEEEEEECCCCC
Confidence            8899999887654 6789999998764   466655433  35555 33577887776543 33579999986554

>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*

Probab=99.58  E-value=4.9e-15  Score=152.34  Aligned_cols=144  Identities=19%  Similarity=0.127  Sum_probs=109.4

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY  538 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~  538 (623)
                      ...+.+.+++. +|..++++++.|++.      +++.|+||++||++...   .+......|+++||+|+.+|+||.+++
T Consensus        66 ~~~~~~~~~~~-dg~~i~~~~~~P~~~------~~~~p~vv~~HG~g~~~---~~~~~~~~l~~~G~~v~~~d~rG~g~s  135 (337)
T 1vlq_A           66 VEAYDVTFSGY-RGQRIKGWLLVPKLE------EEKLPCVVQYIGYNGGR---GFPHDWLFWPSMGYICFVMDTRGQGSG  135 (337)
T ss_dssp             EEEEEEEEECG-GGCEEEEEEEEECCS------CSSEEEEEECCCTTCCC---CCGGGGCHHHHTTCEEEEECCTTCCCS
T ss_pred             eEEEEEEEEcC-CCCEEEEEEEecCCC------CCCccEEEEEcCCCCCC---CCchhhcchhhCCCEEEEecCCCCCCc
Confidence            36788999987 899999999999761      35679999999986442   333456678899999999999998855


Q ss_pred             chhHHHhh------ccCCc---------------cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC
Q 006979          539 GREFRERL------LGRWG---------------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD  596 (623)
Q Consensus       539 g~~~~~~~------~~~~g---------------~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~  596 (623)
                      +..-....      ...++               ...++|+.++++++.+++.+|++||+|+|+|+||++++.++ .+| 
T Consensus       136 ~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p-  214 (337)
T 1vlq_A          136 WLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-  214 (337)
T ss_dssp             SSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-
T ss_pred             ccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-
Confidence            43100000      00000               14578999999999999889999999999999999999998 677 


Q ss_pred             ceeEEEecccC-CCHHHh
Q 006979          597 TFKAGASLYGV-SIPVII  613 (623)
Q Consensus       597 ~f~a~v~~~g~-~d~~~~  613 (623)
                      .++++|+.+|. .++..+
T Consensus       215 ~v~~~vl~~p~~~~~~~~  232 (337)
T 1vlq_A          215 KAKALLCDVPFLCHFRRA  232 (337)
T ss_dssp             SCCEEEEESCCSCCHHHH
T ss_pred             CccEEEECCCcccCHHHH
Confidence            58899988884 555443

>3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A

Probab=99.56  E-value=2.9e-15  Score=165.36  Aligned_cols=138  Identities=17%  Similarity=0.128  Sum_probs=111.7

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc-CcCCHHh-HHHHcCceEEEEECCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSI-QYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~-~~~~~~~-~~~a~~G~~v~~~d~rGs~  536 (623)
                      ...+.+.++.. ||..|++.+|.|++       .++.|+||+.||....... ..|...+ ++|+++||+|+.+|+||+|
T Consensus         7 ~~~~~v~i~~~-DG~~L~~~~~~P~~-------~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G   78 (587)
T 3i2k_A            7 SVASNVMVPMR-DGVRLAVDLYRPDA-------DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLF   78 (587)
T ss_dssp             EEEEEEEEECT-TSCEEEEEEEEECC-------SSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTST
T ss_pred             EEEEEEEEECC-CCCEEEEEEEECCC-------CCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCC
Confidence            34567889998 99999999999976       4678999999875322111 1222234 8999999999999999999


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC-CCHH
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV-SIPV  611 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~-~d~~  611 (623)
                      +++..+..     + ..+.+|+.++++||.++++.+ .||+++|+||||++++.++ .+++.++|+|+.++. .|+.
T Consensus        79 ~S~g~~~~-----~-~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~  148 (587)
T 3i2k_A           79 ASEGEFVP-----H-VDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYR  148 (587)
T ss_dssp             TCCSCCCT-----T-TTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCC
T ss_pred             CCCCcccc-----c-cchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCcccccc
Confidence            88765432     2 357899999999999998876 8999999999999999998 678899999999999 8764

>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A

Probab=99.56  E-value=1.3e-14  Score=151.95  Aligned_cols=150  Identities=19%  Similarity=0.187  Sum_probs=116.6

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc--------CC--HHhHHHHcCceEEEE
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI--------LN--LSIQYWTSRGWAFVD  529 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~--------~~--~~~~~~a~~G~~v~~  529 (623)
                      ..+.+.+.+..+|..+++++|.|++  +++  ++++|+||++||++.......        +.  ....+...+|+.|+.
T Consensus       143 ~~~~~~~~~~~dg~~l~~~v~~P~~--~~~--~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~  218 (380)
T 3doh_A          143 DFLAFTFKDPETGVEIPYRLFVPKD--VNP--DRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLA  218 (380)
T ss_dssp             GEEEEEEECTTTCCEEEEEEECCSS--CCT--TSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEE
T ss_pred             cccceeeccCCCCcEEEEEEEcCCC--CCC--CCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEE
Confidence            3456677663268899999999987  333  677899999999964432211        11  112334567899999


Q ss_pred             ECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       530 ~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +|+||.++++..|........+..+.+|+.++++++.++..+|++||+|+|+|+||++++.++ .+|++|+++|+.+|..
T Consensus       219 pd~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~  298 (380)
T 3doh_A          219 PQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGG  298 (380)
T ss_dssp             ECCCTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCC
T ss_pred             ecCCCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCC
Confidence            999999988887765444445567789999999999988779999999999999999999888 8999999999999998


Q ss_pred             CHHHh
Q 006979          609 IPVII  613 (623)
Q Consensus       609 d~~~~  613 (623)
                      +...+
T Consensus       299 ~~~~~  303 (380)
T 3doh_A          299 DVSKV  303 (380)
T ss_dssp             CGGGG
T ss_pred             Chhhh
Confidence            76544

>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis}

Probab=99.56  E-value=1.2e-14  Score=139.10  Aligned_cols=138  Identities=14%  Similarity=0.079  Sum_probs=107.4

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+.+.++.  +|.++.++++.|.+         +.|+||++||++.......+...++.|+++||.|+.+|+||.   |
T Consensus        11 ~~~~~~~~~--~g~~l~~~~~~p~~---------~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~---g   76 (223)
T 2o2g_A           11 QEYAVSVSV--GEVKLKGNLVIPNG---------ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLTQ---E   76 (223)
T ss_dssp             CEEEEEEEE--TTEEEEEEEECCTT---------CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSCH---H
T ss_pred             eeeEEEEec--CCeEEEEEEecCCC---------CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCCc---C
Confidence            456788876  68999999999854         468999999985444332344678889999999999999984   3


Q ss_pred             hhHHHhhcc--CCc-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          540 REFRERLLG--RWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       540 ~~~~~~~~~--~~g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      .........  ... ....+|+.++++++..++.+|+++|+++|+|+||++++.++ .+|+.++++|+.+|..++.
T Consensus        77 ~s~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~  152 (223)
T 2o2g_A           77 EEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA  152 (223)
T ss_dssp             HHHHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGC
T ss_pred             CCCccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcC
Confidence            332221110  011 22368899999999999889999999999999999999988 8899999999999987754

>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}

Probab=99.56  E-value=1.8e-14  Score=136.95  Aligned_cols=136  Identities=14%  Similarity=0.090  Sum_probs=106.7

Q ss_pred             CCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCC---CcccCcCCHHhHHHHcCceEEEEECCCC
Q 006979          458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT---SEARGILNLSIQYWTSRGWAFVDVNYGG  534 (623)
Q Consensus       458 ~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~---~~~~~~~~~~~~~~a~~G~~v~~~d~rG  534 (623)
                      ....+.+.+++. +| .++++++.|.+       .++.|+||++||++.   ......+...+..|+++||.|+.+|+||
T Consensus         3 ~~~~~~~~~~~~-~g-~l~~~~~~p~~-------~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g   73 (208)
T 3trd_A            3 VMTNEDFLIQGP-VG-QLEVMITRPKG-------IEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRG   73 (208)
T ss_dssp             CCSSSCEEEECS-SS-EEEEEEECCSS-------CCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred             ccccceEEEECC-Cc-eEEEEEEcCCC-------CCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCC
Confidence            345678889887 88 99999999975       456799999999642   2222234567888999999999999999


Q ss_pred             CCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCHH
Q 006979          535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       535 s~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~~  611 (623)
                      .|.....+      .......+|+.++++++.++  .+.++|+++|+|+||.+++.++.+| .++++|..+|..+..
T Consensus        74 ~g~s~~~~------~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~-~v~~~v~~~~~~~~~  141 (208)
T 3trd_A           74 VGKSQGRY------DNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVAYDQ-KVAQLISVAPPVFYE  141 (208)
T ss_dssp             STTCCSCC------CTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHS-CCSEEEEESCCTTSG
T ss_pred             CCCCCCCc------cchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHhccC-CccEEEEeccccccC
Confidence            77654331      22344589999999999987  4458999999999999999999666 899999999987543

>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium}

Probab=99.56  E-value=2e-14  Score=147.20  Aligned_cols=130  Identities=18%  Similarity=0.231  Sum_probs=103.7

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCc-ccCcCCHHhHHHHc-CceEEEEECCCCCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWTS-RGWAFVDVNYGGSTGY  538 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~-~~~~~~~~~~~~a~-~G~~v~~~d~rGs~~~  538 (623)
                      .+.+++++. +| .+.+++|.|.+       . ..|+||++|||++.. ....+......|++ +||+|+.+|||+++++
T Consensus        63 ~~~~~~~~~-~g-~i~~~~~~p~~-------~-~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~  132 (326)
T 3ga7_A           63 TRTCAVPTP-YG-DVTTRLYSPQP-------T-SQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQA  132 (326)
T ss_dssp             EEEEEECCT-TS-CEEEEEEESSS-------S-CSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTS
T ss_pred             eEEEEeecC-CC-CeEEEEEeCCC-------C-CCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCC
Confidence            378899887 77 89999999975       2 239999999996332 33455567788888 8999999999987654


Q ss_pred             chhHHHhhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cCCCc------eeEEEecccCC
Q 006979          539 GREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AFRDT------FKAGASLYGVS  608 (623)
Q Consensus       539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~~~~------f~a~v~~~g~~  608 (623)
                      ..           ...++|+.++++|+.++.   .+|++||+|+|+|+||++++.++ .+++.      ++++|..+|+.
T Consensus       133 ~~-----------~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~  201 (326)
T 3ga7_A          133 RY-----------PQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLY  201 (326)
T ss_dssp             CT-----------THHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCC
T ss_pred             CC-----------CcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEecccc
Confidence            21           234689999999999864   47999999999999999999888 55553      99999999987


Q ss_pred             CHH
Q 006979          609 IPV  611 (623)
Q Consensus       609 d~~  611 (623)
                      ++.
T Consensus       202 ~~~  204 (326)
T 3ga7_A          202 GLQ  204 (326)
T ss_dssp             SCS
T ss_pred             ccC
Confidence            653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.55  E-value=3.7e-12  Score=130.73  Aligned_cols=282  Identities=13%  Similarity=0.043  Sum_probs=162.8

Q ss_pred             CccCceEEcC-CCcEEEEeecCCC-CCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCC
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTE-AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKD  164 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e-~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~  164 (623)
                      ..+.++.++| ++.+|.......+ .....++.++..++ +....++..         .......++++  .+++....+
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~---------~~~~~~~~s~dg~~l~v~~~~~  110 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHND---------LKPFGATINNTTQTLWFGNTVN  110 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEES---------SCCCSEEEETTTTEEEEEETTT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEecC---------CCcceEEECCCCCEEEEEecCC
Confidence            4566889999 7777766533110 01334666766533 332222211         01233455554  688887777


Q ss_pred             CcEEEEeCCCCCCCceecCCCCCC-----CCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGE-----PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL  239 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~-----~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l  239 (623)
                      +.|+++|++++ .....+......     ......+..|+|||+++++.....       ...|+++|+++++.  ...+
T Consensus       111 ~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------~~~i~~~d~~~~~~--~~~~  180 (353)
T 3vgz_A          111 SAVTAIDAKTG-EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-------ESVIWVVDGGNIKL--KTAI  180 (353)
T ss_dssp             TEEEEEETTTC-CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-------SCEEEEEETTTTEE--EEEE
T ss_pred             CEEEEEeCCCC-eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-------CceEEEEcCCCCce--EEEe
Confidence            88999999877 222333332000     011235578999999887765321       16799999998862  2333


Q ss_pred             ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEe
Q 006979          240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD  319 (623)
Q Consensus       240 ~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~  319 (623)
                      ...........|||||++|++...        ...|+++|+.++.   ....+..........+..+.|+|||+.+|+++
T Consensus       181 ~~~~~~~~~~~~s~dg~~l~~~~~--------~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  249 (353)
T 3vgz_A          181 QNTGKMSTGLALDSEGKRLYTTNA--------DGELITIDTADNK---ILSRKKLLDDGKEHFFINISLDTARQRAFITD  249 (353)
T ss_dssp             CCCCTTCCCCEEETTTTEEEEECT--------TSEEEEEETTTTE---EEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred             cCCCCccceEEECCCCCEEEEEcC--------CCeEEEEECCCCe---EEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence            313333556789999998877642        2358899988763   22222221100003345679999999556665


Q ss_pred             CCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-eccc
Q 006979          320 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDI  398 (623)
Q Consensus       320 ~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~  398 (623)
                      .  +...|+.+|+.+++.........    +      ..+.+.   ++++.+|++...+  ..|+++|..+++.. .+..
T Consensus       250 ~--~~~~v~~~d~~~~~~~~~~~~~~----~------~~~~~s---~dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~~~  312 (353)
T 3vgz_A          250 S--KAAEVLVVDTRNGNILAKVAAPE----S------LAVLFN---PARNEAYVTHRQA--GKVSVIDAKSYKVVKTFDT  312 (353)
T ss_dssp             S--SSSEEEEEETTTCCEEEEEECSS----C------CCEEEE---TTTTEEEEEETTT--TEEEEEETTTTEEEEEEEC
T ss_pred             C--CCCEEEEEECCCCcEEEEEEcCC----C------ceEEEC---CCCCEEEEEECCC--CeEEEEECCCCeEEEEEec
Confidence            4  34578889998887554433211    1      123333   3788777766444  46778898877664 3433


Q ss_pred             CCcceEee--eecCCEEEEEEec
Q 006979          399 PFTDIDNI--TLGNDCLFVEGAS  419 (623)
Q Consensus       399 ~~~~v~~~--~~~~~~~~~~~~s  419 (623)
                      +. ....+  +++++.+++....
T Consensus       313 ~~-~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          313 PT-HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             CS-EEEEEEECTTSCEEEEEEEC
T ss_pred             CC-CCCeEEEcCCCCEEEEEEcc
Confidence            32 23333  6778877777654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.55  E-value=6.4e-13  Score=151.63  Aligned_cols=263  Identities=11%  Similarity=0.039  Sum_probs=165.0

Q ss_pred             EEeCCEEEEEeCCC----CcEEEEeCC---CCCCCceecCCCC---CCCCeeecceeeCCCCCEEEEEEeccCCCCCCce
Q 006979          151 RIFGDTVIFSNYKD----QRLYKHSID---SKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNST  220 (623)
Q Consensus       151 ~~s~d~l~f~~~~~----~~l~~~d~~---~g~~~~~~Lt~~~---~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~  220 (623)
                      .+.++.++|.....    ..||+.+..   ++  ..++|.+..   .........++|||||++|+|...+.+.    ..
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~----e~  188 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGT--KGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGS----DW  188 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTC--CCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTC----SE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCC--CCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCC----ce
Confidence            46677888876543    358999986   55  556643320   0111356789999999999998775432    23


Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC------CCCceEEEEEEecCCCceeeeEEEcC
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM------PWDKAELWVGYISENGDVYKRVCVAG  294 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~------p~~~~~L~v~d~~~~~~~~~~~~~~~  294 (623)
                      .+|+++|+++|+   .............+.|||| ++|+|.+.+.+..      .....+||+.++.++.. ....+...
T Consensus       189 ~~i~v~dl~tg~---~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-~~~lv~~~  263 (741)
T 1yr2_A          189 RTVKFVGVADGK---PLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-ADQPVFAT  263 (741)
T ss_dssp             EEEEEEETTTCC---EEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG-GCEEEECC
T ss_pred             EEEEEEECCCCC---CCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch-hCEEEecc
Confidence            689999999997   4333211112356899999 9999998654310      00134699999876531 11233333


Q ss_pred             CCCCccccCcCceeCCCCc-EEEEEeCC-CCeeeEEEEecCCC--e-EEEEeecccccccccccccCcceeEEeecCCCC
Q 006979          295 FDPTIVESPTEPKWSSKGE-LFFVTDRK-NGFWNLHKWIESNN--E-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKN  369 (623)
Q Consensus       295 ~~~~~~~~~~~~~ws~DG~-l~~~~~~~-~g~~~L~~~d~~~~--~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~  369 (623)
                      .+..  .....+.|||||+ |++.+.+. ++...||.+|++++  + .+.|.........+          +.   ++++
T Consensus       264 ~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~----------~~---~dg~  328 (741)
T 1yr2_A          264 PELP--KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF----------VD---GVGD  328 (741)
T ss_dssp             TTCT--TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE----------EE---EETT
T ss_pred             CCCC--eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE----------Ee---ccCC
Confidence            2211  2356789999999 77777652 14568999999887  5 66776432111111          11   2889


Q ss_pred             EEEEEEEECC-eEEEEEEeCCCC--ceeecccCC-cceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979          370 LIACSYRQNG-RSYLGILDDFGH--SLSLLDIPF-TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       370 ~l~~~~~~~g-~~~L~~~d~~~~--~~~~lt~~~-~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                      .|++.+++++ ..+|+++|++++  +++.+.... ..+..+...++.+++...... ..+|+.++++++..+.|+
T Consensus       329 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg-~~~l~~~~~~g~~~~~l~  402 (741)
T 1yr2_A          329 QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDA-KSQVLAFDLDGKPAGAVS  402 (741)
T ss_dssp             EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETT-EEEEEEEETTSCEEEECB
T ss_pred             EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECC-EEEEEEEeCCCCceeecc
Confidence            9999887654 678999999874  566665433 234455555777877765433 357999998766554443

>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP}

Probab=99.55  E-value=1e-14  Score=150.54  Aligned_cols=142  Identities=22%  Similarity=0.207  Sum_probs=108.7

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+.+.+.+. +|..++++++.|++       .++.|+||++||++...  ..+... ..++++||.|+.+|+||.|+++
T Consensus        81 ~~~~~~~~~~-~g~~l~~~~~~P~~-------~~~~p~vv~~HG~g~~~--~~~~~~-~~~~~~G~~v~~~D~rG~g~s~  149 (346)
T 3fcy_A           81 ECYDLYFTGV-RGARIHAKYIKPKT-------EGKHPALIRFHGYSSNS--GDWNDK-LNYVAAGFTVVAMDVRGQGGQS  149 (346)
T ss_dssp             EEEEEEEECG-GGCEEEEEEEEESC-------SSCEEEEEEECCTTCCS--CCSGGG-HHHHTTTCEEEEECCTTSSSSC
T ss_pred             EEEEEEEEcC-CCCEEEEEEEecCC-------CCCcCEEEEECCCCCCC--CChhhh-hHHHhCCcEEEEEcCCCCCCCC
Confidence            5678888887 89999999999986       56789999999996443  334333 3677999999999999988665


Q ss_pred             hhHHHh----------------hccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEE
Q 006979          540 REFRER----------------LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGA  602 (623)
Q Consensus       540 ~~~~~~----------------~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v  602 (623)
                      ......                ....+-...++|+.++++++.++..+|++||+|+|+|+||++++.++ .+|+ ++++|
T Consensus       150 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~v  228 (346)
T 3fcy_A          150 QDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVV  228 (346)
T ss_dssp             CCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEE
T ss_pred             CCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEE
Confidence            432110                00000012368999999999999889999999999999999999999 7887 99999


Q ss_pred             ecccC-CCHHHh
Q 006979          603 SLYGV-SIPVII  613 (623)
Q Consensus       603 ~~~g~-~d~~~~  613 (623)
                      +.+|. .++...
T Consensus       229 l~~p~~~~~~~~  240 (346)
T 3fcy_A          229 SEYPFLSDYKRV  240 (346)
T ss_dssp             EESCSSCCHHHH
T ss_pred             ECCCcccCHHHH
Confidence            99996 454443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.55  E-value=1.6e-13  Score=162.73  Aligned_cols=311  Identities=9%  Similarity=-0.021  Sum_probs=182.9

Q ss_pred             hccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeC
Q 006979           85 SGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNY  162 (623)
Q Consensus        85 ~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~  162 (623)
                      +........++||| |+.|.|...++.+.+...|+.++..+| +.+.++.....++++.+++  ...++++| .++|+..
T Consensus        49 t~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g-~~~~lt~~~~~~~~~~~~~--~~~~~SpDg~ll~~~~  125 (1045)
T 1k32_A           49 VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG-EIKRITYFSGKSTGRRMFT--DVAGFDPDGNLIISTD  125 (1045)
T ss_dssp             ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT-EEEECCCCCEEEETTEECS--EEEEECTTCCEEEEEC
T ss_pred             eeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC-CeEEcccCCCccccccccc--ccccCCCCCEEEEEEC
Confidence            33344567899999 888999987754457777888876643 5566665442333333332  45566655 5778765


Q ss_pred             CC------CcEEEEeCCCCCCCceecCCCCCCC----------------------------------------------C
Q 006979          163 KD------QRLYKHSIDSKDSSPLPITPDYGEP----------------------------------------------L  190 (623)
Q Consensus       163 ~~------~~l~~~d~~~g~~~~~~Lt~~~~~~----------------------------------------------~  190 (623)
                      .+      .+||.++++++  ..++++......                                              .
T Consensus       126 ~~~~~~~~~~l~~~~~~~g--~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~  203 (1045)
T 1k32_A          126 AMQPFSSMTCLYRVENDGI--NFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS  203 (1045)
T ss_dssp             TTSSSTTCCEEEEEEGGGT--EEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred             CcCCCcccceEEEEECCCC--CeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence            33      46999999876  566666531000                                              0


Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCC----
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHP----  266 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~----  266 (623)
                      .....+.|+||  .++|+.....      ...||.++++++.   .++++...++ ..+.|||||++|+|.. +..    
T Consensus       204 ~~v~~~~~s~d--~l~~~~~~dg------~~~l~~~~~~g~~---~~~l~~~~~~-~~~~~SpDG~~la~~~-~~~i~~~  270 (1045)
T 1k32_A          204 THVSSPVIVGH--RIYFITDIDG------FGQIYSTDLDGKD---LRKHTSFTDY-YPRHLNTDGRRILFSK-GGSIYIF  270 (1045)
T ss_dssp             SCCEEEEEETT--EEEEEECTTS------SCEEEEEETTSCS---CEECCCCCSS-CEEEEEESSSCEEEEE-TTEEEEE
T ss_pred             CcccceEEeCC--EEEEEEeccC------ceEEEEEeCCCCc---ceEecCCCCc-ceeeEcCCCCEEEEEe-CCEEEEe
Confidence            01112345554  4555543221      2578888887766   5666554433 3357777777776653 110    


Q ss_pred             -----------C------------------CCC---C--------ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          267 -----------N------------------MPW---D--------KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       267 -----------~------------------~p~---~--------~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                                 .                  +.|   +        ...|+++++.++    ....+.... .  ..+..+
T Consensus       271 d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~----~~~~~~~~~-~--~~~~~~  343 (1045)
T 1k32_A          271 NPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT----YVLKVPEPL-R--IRYVRR  343 (1045)
T ss_dssp             CTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS----BEEECSCCS-C--EEEEEE
T ss_pred             cCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC----ceEEccCCC-c--ceEEee
Confidence                       0                  000   0        012333333322    111222222 0  145678


Q ss_pred             eeCCCCc-EEEEEeCCCCeeeEE-EEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          307 KWSSKGE-LFFVTDRKNGFWNLH-KWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       307 ~ws~DG~-l~~~~~~~~g~~~L~-~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      .|+ ||+ +++.++.    ..|+ .+|..+++.+.++.....+..+.|++            |++.|++...+   ..|+
T Consensus       344 ~~s-dg~~l~~~s~~----~~l~~~~d~~~~~~~~l~~~~~~~~~~~~Sp------------DG~~la~~~~~---~~v~  403 (1045)
T 1k32_A          344 GGD-TKVAFIHGTRE----GDFLGIYDYRTGKAEKFEENLGNVFAMGVDR------------NGKFAVVANDR---FEIM  403 (1045)
T ss_dssp             CSS-SEEEEEEEETT----EEEEEEEETTTCCEEECCCCCCSEEEEEECT------------TSSEEEEEETT---SEEE
T ss_pred             eEc-CCCeEEEEECC----CceEEEEECCCCCceEecCCccceeeeEECC------------CCCEEEEECCC---CeEE
Confidence            999 998 7776652    4788 88988888777763333334444443            88888876532   3788


Q ss_pred             EEeCCCCceeecc-cCCcceEee--eecCCEEEEEEecC------CCCCeEEEEEcCCCcceeee
Q 006979          385 ILDDFGHSLSLLD-IPFTDIDNI--TLGNDCLFVEGASG------VEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       385 ~~d~~~~~~~~lt-~~~~~v~~~--~~~~~~~~~~~~s~------~~~~~ly~~~l~~~~~~~lt  440 (623)
                      ++|+++++.+.+. .....+..+  +++++++++.....      .....|+++++++++.+.++
T Consensus       404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~  468 (1045)
T 1k32_A          404 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT  468 (1045)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred             EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee
Confidence            9999999888776 333333333  88898888877643      34568999999888755544

>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=1.7e-14  Score=140.19  Aligned_cols=136  Identities=19%  Similarity=0.202  Sum_probs=104.6

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+.+.++.  +|..+.++++.|.+.      .++.|+||++||...  ....+...++.|+++||.|+.+|+||.++..
T Consensus         5 ~~~~~~~~~--~~~~~~~~~~~p~~~------~~~~p~vv~~HG~~g--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~   74 (241)
T 3f67_A            5 IAGETSIPS--QGENMPAYHARPKNA------DGPLPIVIVVQEIFG--VHEHIRDLCRRLAQEGYLAIAPELYFRQGDP   74 (241)
T ss_dssp             EEEEEEEEE--TTEEEEEEEEEETTC------CSCEEEEEEECCTTC--SCHHHHHHHHHHHHTTCEEEEECTTTTTCCG
T ss_pred             eeeeEEEec--CCcceEEEEecCCCC------CCCCCEEEEEcCcCc--cCHHHHHHHHHHHHCCcEEEEecccccCCCC
Confidence            345677777  688999999999762      356899999999743  3345667788899999999999999876654


Q ss_pred             hhHHH-------hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          540 REFRE-------RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       540 ~~~~~-------~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ..+..       ...........+|+.+++++|.+++ +|++||+++|+|+||++++.++ .+|+ ++++|+.+|.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~  148 (241)
T 3f67_A           75 NEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGK  148 (241)
T ss_dssp             GGCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCC
T ss_pred             CchhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEecc
Confidence            43211       1111122345789999999999998 8899999999999999999999 6776 7788887776

>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*

Probab=99.52  E-value=4.8e-14  Score=138.36  Aligned_cols=134  Identities=19%  Similarity=0.170  Sum_probs=102.8

Q ss_pred             EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHH
Q 006979          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR  543 (623)
Q Consensus       464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~  543 (623)
                      +++..  +|.+++++++.|.+.      .++.|.||++||.+.......|...++.|+++||.|+.+|+||.|.+.....
T Consensus         4 ~~~~~--~g~~l~~~~~~p~~~------~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~   75 (251)
T 2wtm_A            4 MYIDC--DGIKLNAYLDMPKNN------PEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFE   75 (251)
T ss_dssp             EEEEE--TTEEEEEEEECCTTC------CSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGG
T ss_pred             eEEec--CCcEEEEEEEccCCC------CCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCCCCCCCCccc
Confidence            45554  789999999988641      2456899999998554223456677888999999999999999776543211


Q ss_pred             HhhccCCc-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979          544 ERLLGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       544 ~~~~~~~g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                           .+. ....+|+.++++++.++..+  +++.++||||||.+++.++ .+|++++++|..+|...+..
T Consensus        76 -----~~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~  139 (251)
T 2wtm_A           76 -----DHTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPE  139 (251)
T ss_dssp             -----GCCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHH
T ss_pred             -----cCCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHH
Confidence                 111 12468899999999876544  4999999999999999998 88999999999999876543

>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36

Probab=99.52  E-value=6.6e-14  Score=134.05  Aligned_cols=133  Identities=16%  Similarity=0.152  Sum_probs=105.1

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCC--CCCCEEEEecCCCCCc---ccCcCCHHhHHHHcCceEEEEECCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPE--EKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYG  533 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~--~~~Pliv~~hGg~~~~---~~~~~~~~~~~~a~~G~~v~~~d~r  533 (623)
                      ...+.+.+++. +| .+.++++.|.+       .  ++.|+||++||++...   ....+...++.|+++||.|+.+|+|
T Consensus         8 ~~~~~~~~~~~-~g-~~~~~~~~p~~-------~~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~   78 (220)
T 2fuk_A            8 TESAALTLDGP-VG-PLDVAVDLPEP-------DVAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFR   78 (220)
T ss_dssp             SSCEEEEEEET-TE-EEEEEEECCCT-------TSCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCT
T ss_pred             ccceEEEEeCC-CC-eEEEEEEeCCC-------CCccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecC
Confidence            35678899987 77 89999999976       3  4589999999964321   2223456788899999999999999


Q ss_pred             CCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          534 GSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       534 Gs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      |.+.....+      .......+|+.++++++.++.  +.++|+++|+|+||++++.++ .+  .++++|..+|..+.
T Consensus        79 g~g~s~~~~------~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~  146 (220)
T 2fuk_A           79 SVGTSAGSF------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGR  146 (220)
T ss_dssp             TSTTCCSCC------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTT
T ss_pred             CCCCCCCCc------ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccc
Confidence            977654332      233456899999999999874  678999999999999999998 55  79999999998765

>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*

Probab=99.52  E-value=3.2e-14  Score=144.19  Aligned_cols=143  Identities=22%  Similarity=0.190  Sum_probs=106.7

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+.+.+++. +|..++++++.|++       .++.|+||++||++... ...+ .....++++||.|+.+|+||.+++.
T Consensus        55 ~~~~~~~~~~-~g~~i~~~~~~P~~-------~~~~p~vv~~HG~~~~~-~~~~-~~~~~l~~~g~~v~~~d~rg~g~s~  124 (318)
T 1l7a_A           55 KVYRLTYKSF-GNARITGWYAVPDK-------EGPHPAIVKYHGYNASY-DGEI-HEMVNWALHGYATFGMLVRGQQRSE  124 (318)
T ss_dssp             EEEEEEEEEG-GGEEEEEEEEEESS-------CSCEEEEEEECCTTCCS-GGGH-HHHHHHHHTTCEEEEECCTTTSSSC
T ss_pred             EEEEEEEEcc-CCCEEEEEEEeeCC-------CCCccEEEEEcCCCCCC-CCCc-ccccchhhCCcEEEEecCCCCCCCC
Confidence            4677888887 88899999999976       46679999999996430 2222 2334788899999999999988765


Q ss_pred             hhHHHhhc-----cCCc---------cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEec
Q 006979          540 REFRERLL-----GRWG---------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASL  604 (623)
Q Consensus       540 ~~~~~~~~-----~~~g---------~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~  604 (623)
                      ..+.....     -..+         ....+|+.++++|+.+++.+|++||+++|+|+||++++.++ .+|+ ++++|..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~  203 (318)
T 1l7a_A          125 DTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVAD  203 (318)
T ss_dssp             CCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEE
T ss_pred             CcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEec
Confidence            43210000     0011         23478999999999999889999999999999999999998 6776 6667778


Q ss_pred             ccC-CCHHHh
Q 006979          605 YGV-SIPVII  613 (623)
Q Consensus       605 ~g~-~d~~~~  613 (623)
                      +|. .++...
T Consensus       204 ~p~~~~~~~~  213 (318)
T 1l7a_A          204 YPYLSNFERA  213 (318)
T ss_dssp             SCCSCCHHHH
T ss_pred             CCcccCHHHH
Confidence            885 555544

>3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0

Probab=99.52  E-value=1.4e-14  Score=144.53  Aligned_cols=146  Identities=17%  Similarity=0.163  Sum_probs=98.8

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECC--CCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNY--GGSTG  537 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~--rGs~~  537 (623)
                      .+.+.+.+...|..+...+|.|++.  +   .+++|+||++||++...... ......+.++++||+|+.+|+  ||.++
T Consensus        16 ~~~~~~~s~~~~~~~~~~v~~P~~~--~---~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~   90 (282)
T 3fcx_A           16 QKVFEHDSVELNCKMKFAVYLPPKA--E---TGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNI   90 (282)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECGGG--G---TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC
T ss_pred             EEEEEEEchhcCCeeEEEEEcCCCC--C---CCCCCEEEEEcCCCCCccchhhcchHHHHhhcCCeEEEEeccccCcccc
Confidence            3445555443688999999999762  1   46789999999985443221 111235778899999999999  88776


Q ss_pred             Cchh-----------HHHhhccCCcc--chHHHHH-HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEE
Q 006979          538 YGRE-----------FRERLLGRWGI--VDVNDCC-SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGA  602 (623)
Q Consensus       538 ~g~~-----------~~~~~~~~~g~--~~~~D~~-~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v  602 (623)
                      .|..           |.......+..  ....++. .+++++.++..+|++||+|+|+|+||++++.++ .+|++|+++|
T Consensus        91 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v  170 (282)
T 3fcx_A           91 KGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVS  170 (282)
T ss_dssp             --------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEE
T ss_pred             ccccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEE
Confidence            5543           11111111100  1223333 555566545458999999999999999999999 8899999999


Q ss_pred             ecccCCCHH
Q 006979          603 SLYGVSIPV  611 (623)
Q Consensus       603 ~~~g~~d~~  611 (623)
                      +.+|+.++.
T Consensus       171 ~~s~~~~~~  179 (282)
T 3fcx_A          171 AFAPICNPV  179 (282)
T ss_dssp             EESCCCCGG
T ss_pred             EeCCccCcc
Confidence            999998753

>3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A

Probab=99.51  E-value=1.2e-14  Score=148.73  Aligned_cols=119  Identities=18%  Similarity=0.115  Sum_probs=94.2

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc-CcCCHHhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCc
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWG  551 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~-~~~~~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g  551 (623)
                      .+++++|.|.+       .++.|+||++|||++.... ..+......++. .||+|+.+|||+++++.           .
T Consensus        66 ~i~~~~~~p~~-------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~-----------~  127 (322)
T 3fak_A           66 GCAAEWVRAPG-------CQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHP-----------F  127 (322)
T ss_dssp             TEEEEEEECTT-------CCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSC-----------T
T ss_pred             CeEEEEEeCCC-------CCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCC-----------C
Confidence            38889999976       4668999999998643222 234455666666 69999999999876532           2


Q ss_pred             cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC----ceeEEEecccCCCHH
Q 006979          552 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD----TFKAGASLYGVSIPV  611 (623)
Q Consensus       552 ~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~----~f~a~v~~~g~~d~~  611 (623)
                      ...++|+.++++|+.++ .+|++||+|+|+|+||++++.++ ..++    .++++|+.+|+.|+.
T Consensus       128 ~~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~  191 (322)
T 3fak_A          128 PAAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMT  191 (322)
T ss_dssp             THHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTT
T ss_pred             CcHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCc
Confidence            23479999999999998 67999999999999999999888 5444    499999999999874

>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A*

Probab=99.51  E-value=7.8e-14  Score=145.15  Aligned_cols=139  Identities=16%  Similarity=0.141  Sum_probs=102.1

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEc-CCCCCC----------------CCCCCCCCCEEEEecCCCCCcccC---cCCHHhH
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYP-PSNPIY----------------QASPEEKPPLLVKSHGGPTSEARG---ILNLSIQ  518 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~-P~~~~~----------------~~~~~~~~Pliv~~hGg~~~~~~~---~~~~~~~  518 (623)
                      ...+.+.+... +|  +.+.+|. |+...-                ..+.+++.|+||++|||++.....   .+...++
T Consensus        62 v~~~dv~~~~~-~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~~~  138 (365)
T 3ebl_A           62 VSSFDHIIDQS-VG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCR  138 (365)
T ss_dssp             EEEEEEEEETT-TT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHHHH
T ss_pred             CceeeEEecCC-CC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHHHH
Confidence            35577888776 77  6666776 764200                001246789999999996533322   2456678


Q ss_pred             HHHcC-ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCC----CCCCC-ceEEEEcChHHHHHHHHh
Q 006979          519 YWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG----KADEK-RLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       519 ~~a~~-G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~----~~d~~-rv~i~G~S~GG~~~~~~~  592 (623)
                      .|+++ ||+|+.+|||++++...           ...++|+.++++|+.++.    .+|++ ||+|+|+|+||++++.++
T Consensus       139 ~la~~~g~~Vv~~dyR~~p~~~~-----------~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~~a  207 (365)
T 3ebl_A          139 RFVKLSKGVVVSVNYRRAPEHRY-----------PCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHVA  207 (365)
T ss_dssp             HHHHHHTSEEEEECCCCTTTSCT-----------THHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEeeCCCCCCCCC-----------cHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHHHH
Confidence            88886 99999999998764321           234789999999999765    58999 999999999999999888


Q ss_pred             -cCCC---ceeEEEecccCCCHH
Q 006979          593 -AFRD---TFKAGASLYGVSIPV  611 (623)
Q Consensus       593 -~~~~---~f~a~v~~~g~~d~~  611 (623)
                       ..++   .++++|+.+|+.|+.
T Consensus       208 ~~~~~~~~~~~g~vl~~p~~~~~  230 (365)
T 3ebl_A          208 VRAADEGVKVCGNILLNAMFGGT  230 (365)
T ss_dssp             HHHHHTTCCCCEEEEESCCCCCS
T ss_pred             HHHHhcCCceeeEEEEccccCCC
Confidence             5444   799999999998753

>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp}

Probab=99.51  E-value=5.4e-14  Score=139.92  Aligned_cols=137  Identities=12%  Similarity=0.070  Sum_probs=101.7

Q ss_pred             EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCC-cccCcCCHHhHHHHcCceEEEEECCCCCCCCchhH
Q 006979          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF  542 (623)
Q Consensus       464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~-~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~  542 (623)
                      ..+... +|..+.+++..|...  .  ++++.|+||++|||++. .....+...+..|+++||.|+.+|+||.+..... 
T Consensus        17 ~~~~~~-~g~~l~~~~~~~~~~--~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~-   90 (276)
T 3hxk_A           17 STFSLN-DTAWVDFYQLQNPRQ--N--ENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTNY-   90 (276)
T ss_dssp             EECCCB-TTBEEEEECCCC----------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCCS-
T ss_pred             ccccCC-CCeEEEEEEeCCccc--c--cCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCCC-
Confidence            445555 788888777666431  1  13678999999998633 3334556788899999999999999997653210 


Q ss_pred             HHhhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-c-CCCceeEEEecccCCCHHH
Q 006979          543 RERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       543 ~~~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~-~~~~f~a~v~~~g~~d~~~  612 (623)
                            .......+|+.++++++.++.   .+|++||+|+|+|+||++++.++ . ++..++++|+.+|+.++..
T Consensus        91 ------~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~  159 (276)
T 3hxk_A           91 ------NFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTF  159 (276)
T ss_dssp             ------CTHHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTS
T ss_pred             ------CcCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHh
Confidence                  001135789999999998853   37899999999999999999999 4 5889999999999988544

>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A

Probab=99.51  E-value=3.7e-14  Score=144.00  Aligned_cols=134  Identities=16%  Similarity=0.146  Sum_probs=106.4

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCC-cccCcCCHHhHHHHcC-ceEEEEECCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSR-GWAFVDVNYGGST  536 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~-~~~~~~~~~~~~~a~~-G~~v~~~d~rGs~  536 (623)
                      ...+.+.++.. +| .+.+++|.|.+.      .++.|+||++|||++. .....+...+..|+++ ||.|+.+||||.+
T Consensus        46 ~~~~~~~i~~~-~g-~l~~~~~~P~~~------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~  117 (310)
T 2hm7_A           46 AEVREFDMDLP-GR-TLKVRMYRPEGV------EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAP  117 (310)
T ss_dssp             SEEEEEEEEET-TE-EEEEEEEECTTC------CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred             ceEEEEEeccC-CC-eEEEEEEecCCC------CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCC
Confidence            35677888886 66 899999999751      3457999999998633 3334566778888886 9999999999977


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cCCC----ceeEEEecccCC
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AFRD----TFKAGASLYGVS  608 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~~~----~f~a~v~~~g~~  608 (623)
                      ++..           ....+|+.++++|+.++.   .+|++||+|+|+|+||++++.++ .+++    .++++|..+|..
T Consensus       118 ~~~~-----------~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~  186 (310)
T 2hm7_A          118 EHKF-----------PAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPST  186 (310)
T ss_dssp             TSCT-----------THHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCC
T ss_pred             CCCC-----------CccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Confidence            6432           134689999999999875   36889999999999999999988 5554    699999999988


Q ss_pred             CHH
Q 006979          609 IPV  611 (623)
Q Consensus       609 d~~  611 (623)
                      |+.
T Consensus       187 ~~~  189 (310)
T 2hm7_A          187 GYD  189 (310)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.50  E-value=3.4e-12  Score=145.55  Aligned_cols=259  Identities=7%  Similarity=-0.012  Sum_probs=163.0

Q ss_pred             EeCCEEEEEeCCCCc----EEEEeCC--CCCC--CceecCCCC---CC-CCeeecceeeC-CCCCEEEEEEeccCCCCCC
Q 006979          152 IFGDTVIFSNYKDQR----LYKHSID--SKDS--SPLPITPDY---GE-PLVSYADGIFD-PRFNRYVTVREDRRQDALN  218 (623)
Q Consensus       152 ~s~d~l~f~~~~~~~----l~~~d~~--~g~~--~~~~Lt~~~---~~-~~~~~~d~~~s-PdG~~l~~v~~~~~~~~~~  218 (623)
                      ..++.++|.....++    +|+.+..  .+ .  ..+.|.+..   +. .......++|| |||++|+|+....+.    
T Consensus       124 ~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~-~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~----  198 (751)
T 2xe4_A          124 VYGKYRYYTREVKGKPYKIYCRVFTDKEPG-DVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGN----  198 (751)
T ss_dssp             EETTEEEEEEECTTCCSCEEEEEETTSCTT-CTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSS----
T ss_pred             EECCEEEEEEECCCCceeEEEEEcCCCCCC-CCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCC----
Confidence            456678887655433    6777651  23 1  233433220   01 11245678999 999999998875432    


Q ss_pred             ceeEEEEEEcCCC-CcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979          219 STTEIVAIALNGQ-NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP  297 (623)
Q Consensus       219 ~~~~L~~idl~~g-~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~  297 (623)
                      ...+||++|+++| +.. ...+.   .....+.|||||++|+|++.++..   ...+||+.++.++.. ....+..+.+ 
T Consensus       199 ~~~~l~v~dl~~g~~~l-~~~~~---~~~~~~~WspDg~~l~y~~~d~~~---~~~~v~~~~lgt~~~-~~~lv~~~~~-  269 (751)
T 2xe4_A          199 EVYTIEFKRISDPSQTI-ADKVS---GTNGEIVWGPDHTSLFYVTKDETL---RENKVWRHVMGKLQS-EDVCLYEEHN-  269 (751)
T ss_dssp             SCEEEEEEETTCTTCCC-CCCEE---EECSCCEECSSTTEEEEEEECTTC---CEEEEEEEETTSCGG-GCEEEEECCC-
T ss_pred             ceEEEEEEECCCCCEeC-Ccccc---CceeeEEEecCCCEEEEEEECCCC---CCCEEEEEECCCCch-hcEEEEecCC-
Confidence            2267999999998 510 01121   124578999999999999876532   345899999976521 1123333332 


Q ss_pred             CccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC--eE--EEEeecccccccccccccCcceeEEeecCCCCEEE
Q 006979          298 TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN--EV--LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA  372 (623)
Q Consensus       298 ~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~--~~--~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~  372 (623)
                      .  .....+.|||||+ |++.+.. .+...||.+|++++  +.  +.|++..   ..+.|++.     +.    +++.|+
T Consensus       270 ~--~~~~~~~~SpDg~~l~~~~~~-~~~~~l~~~d~~~~~~~~~~~~l~~~~---~~~~~s~~-----~~----~g~~l~  334 (751)
T 2xe4_A          270 P--LFSAFMYKAADTNTLCIGSQS-PETAEVHLLDLRKGNAHNTLEIVRPRE---KGVRYDVQ-----MH----GTSHLV  334 (751)
T ss_dssp             T--TCEEEEEECTTSSEEEEEEEC-SSCEEEEEEESSSCTTCCCEEESSCCC---TTCCEEEE-----EE----TTTEEE
T ss_pred             C--ceEEEEEECCCCCEEEEEecC-CCCceEEEEECCCCCCCceeEEeecCC---CCceEEEe-----ee----eCCEEE
Confidence            1  2345789999999 7777765 56778999999875  34  5665432   22333321     11    588999


Q ss_pred             EEEEEC--CeEEEEEEeCCC-Cceee-cccCCc--ceEeeeecCCEEEEEEecCCCCCeEEEEEc-------CCCc-cee
Q 006979          373 CSYRQN--GRSYLGILDDFG-HSLSL-LDIPFT--DIDNITLGNDCLFVEGASGVEPSSVAKVTL-------DDHK-LKA  438 (623)
Q Consensus       373 ~~~~~~--g~~~L~~~d~~~-~~~~~-lt~~~~--~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l-------~~~~-~~~  438 (623)
                      +.++++  +..+||++++++ ++++. |....+  .+..++..++.+++..... ...+|+++++       ++++ .+.
T Consensus       335 ~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~-g~~~l~~~dl~~~~~~~~~g~~~~~  413 (751)
T 2xe4_A          335 ILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRA-GLTRIWTMMADSQDGVFKAGTGLRE  413 (751)
T ss_dssp             EEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEET-TEEEEEEEECCTTTSCCCTTTCCEE
T ss_pred             EEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeC-CEEEEEEEecccccccccCCccceE
Confidence            998875  678999999886 45555 433333  2445566778888777543 3468999996       5665 555


Q ss_pred             ee
Q 006979          439 VD  440 (623)
Q Consensus       439 lt  440 (623)
                      |+
T Consensus       414 l~  415 (751)
T 2xe4_A          414 VV  415 (751)
T ss_dssp             CC
T ss_pred             EC
Confidence            53

>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens}

Probab=99.50  E-value=1.1e-13  Score=146.98  Aligned_cols=115  Identities=13%  Similarity=0.195  Sum_probs=97.3

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccc
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV  553 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~  553 (623)
                      .+.++++.|.+       .++.|+||++||++..    .+...++.|+++||.|+++||||.++...        .....
T Consensus       144 ~l~~~l~~P~~-------~~~~P~Vv~~hG~~~~----~~~~~a~~La~~Gy~V~a~D~rG~g~~~~--------~~~~~  204 (422)
T 3k2i_A          144 RVRATLFLPPG-------PGPFPGIIDIFGIGGG----LLEYRASLLAGHGFATLALAYYNFEDLPN--------NMDNI  204 (422)
T ss_dssp             TEEEEEEECSS-------SCCBCEEEEECCTTCS----CCCHHHHHHHTTTCEEEEEECSSSTTSCS--------SCSCE
T ss_pred             cEEEEEEcCCC-------CCCcCEEEEEcCCCcc----hhHHHHHHHHhCCCEEEEEccCCCCCCCC--------CcccC
Confidence            58999999976       5668999999998533    34567899999999999999999765433        23335


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       554 ~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ..+|+.++++||.++..+|++||+|+|+|+||++++.++ .+|+ ++++|+++|..
T Consensus       205 ~~~d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~  259 (422)
T 3k2i_A          205 SLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSG  259 (422)
T ss_dssp             ETHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCS
T ss_pred             CHHHHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcc
Confidence            689999999999999889999999999999999999998 7887 99999999886

>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A

Probab=99.49  E-value=1.4e-13  Score=140.76  Aligned_cols=132  Identities=17%  Similarity=0.131  Sum_probs=103.8

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCC-CcccCcCCHHhHHHHcC-ceEEEEECCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT-SEARGILNLSIQYWTSR-GWAFVDVNYGGST  536 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~-~~~~~~~~~~~~~~a~~-G~~v~~~d~rGs~  536 (623)
                      ...+.+.++.. +| .+.+++|.|.+       .++.|+||++|||++ ......+...+..|+++ ||.|+.+||||.+
T Consensus        63 ~~~~~~~i~~~-~~-~i~~~iy~P~~-------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~  133 (323)
T 3ain_A           63 GKIEDITIPGS-ET-NIKARVYYPKT-------QGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAP  133 (323)
T ss_dssp             SEEEEEEEECS-SS-EEEEEEEECSS-------CSCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred             cEEEEEEecCC-CC-eEEEEEEecCC-------CCCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCC
Confidence            35678888876 66 89999999975       456799999999863 23344566778888864 9999999999976


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCCC-C-CCCceEEEEcChHHHHHHHHh-cCCCce---eEEEecccCCCH
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK-A-DEKRLCITGGSAGGYTTLAAL-AFRDTF---KAGASLYGVSIP  610 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~-~-d~~rv~i~G~S~GG~~~~~~~-~~~~~f---~a~v~~~g~~d~  610 (623)
                      ++..           ....+|+.++++|+.++.. . |++||+|+|+|+||++++.++ .+++..   ++.|..+|+.|+
T Consensus       134 ~~~~-----------p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~  202 (323)
T 3ain_A          134 ENKF-----------PAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSF  202 (323)
T ss_dssp             TSCT-----------THHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSC
T ss_pred             CCCC-----------cchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccC
Confidence            5421           2347899999999988631 1 789999999999999999888 666555   899999998874

>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens}

Probab=99.49  E-value=1.6e-13  Score=146.69  Aligned_cols=116  Identities=14%  Similarity=0.229  Sum_probs=97.2

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccc
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV  553 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~  553 (623)
                      .+.+++|.|.+       .++.|+||++||+...    .+...++.|+++||.|+++||||.++....        ....
T Consensus       160 ~l~~~l~~P~~-------~~~~P~Vv~lhG~~~~----~~~~~a~~La~~Gy~Vla~D~rG~~~~~~~--------~~~~  220 (446)
T 3hlk_A          160 RVRGTLFLPPE-------PGPFPGIVDMFGTGGG----LLEYRASLLAGKGFAVMALAYYNYEDLPKT--------METL  220 (446)
T ss_dssp             TEEEEEEECSS-------SCCBCEEEEECCSSCS----CCCHHHHHHHTTTCEEEEECCSSSTTSCSC--------CSEE
T ss_pred             eEEEEEEeCCC-------CCCCCEEEEECCCCcc----hhhHHHHHHHhCCCEEEEeccCCCCCCCcc--------hhhC
Confidence            58999999976       5667999999999543    344568999999999999999997654432        2335


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       554 ~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ..+|+.++++||.++..+|++||+|+|+|+||++++.++ .+|+ ++++|+.+|...
T Consensus       221 ~~~d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~  276 (446)
T 3hlk_A          221 HLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVA  276 (446)
T ss_dssp             EHHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSB
T ss_pred             CHHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCccc
Confidence            689999999999999989999999999999999999988 7787 999999998753

>2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36

Probab=99.49  E-value=2.4e-13  Score=133.29  Aligned_cols=134  Identities=17%  Similarity=0.243  Sum_probs=102.6

Q ss_pred             CcE--EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc---CcCCHHhHHHHcCceEEEEECCCC
Q 006979          460 LPE--LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGG  534 (623)
Q Consensus       460 ~~~--~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~---~~~~~~~~~~a~~G~~v~~~d~rG  534 (623)
                      ..|  .+.+++. +| .+.++++.|.+        ++.|+||++||.+.....   ..+...++.|+++||.|+.+|+||
T Consensus        20 ~~e~~~~~~~~~-~g-~l~~~~~~p~~--------~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g   89 (249)
T 2i3d_A           20 QGHMPEVIFNGP-AG-RLEGRYQPSKE--------KSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRS   89 (249)
T ss_dssp             ----CEEEEEET-TE-EEEEEEECCSS--------TTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred             cCceeEEEEECC-Cc-eEEEEEEcCCC--------CCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCC
Confidence            445  8889887 66 89999998853        456899999997432211   123567888999999999999999


Q ss_pred             CCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       535 s~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      .|.....+      .......+|+.++++++.+++ .|++||+++|+|+||++++.++ .+|+ ++++|+.+|..++.
T Consensus        90 ~G~s~~~~------~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~  159 (249)
T 2i3d_A           90 IGRSQGEF------DHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTY  159 (249)
T ss_dssp             STTCCSCC------CSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTS
T ss_pred             CCCCCCCC------CCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhh
Confidence            76543321      123345699999999999875 4788999999999999999999 7887 99999999987653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.49  E-value=4.5e-12  Score=150.21  Aligned_cols=267  Identities=11%  Similarity=0.009  Sum_probs=177.3

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEE
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~  168 (623)
                      ..+..+.|+ ++.++++..+   ++...||..+..+ +..+.++... .       .....|.+++..+++.  .++.||
T Consensus       204 ~~v~~~~~s-~d~l~~~~~~---dg~~~l~~~~~~g-~~~~~l~~~~-~-------~~~~~~SpDG~~la~~--~~~~i~  268 (1045)
T 1k32_A          204 THVSSPVIV-GHRIYFITDI---DGFGQIYSTDLDG-KDLRKHTSFT-D-------YYPRHLNTDGRRILFS--KGGSIY  268 (1045)
T ss_dssp             SCCEEEEEE-TTEEEEEECT---TSSCEEEEEETTS-CSCEECCCCC-S-------SCEEEEEESSSCEEEE--ETTEEE
T ss_pred             CcccceEEe-CCEEEEEEec---cCceEEEEEeCCC-CcceEecCCC-C-------cceeeEcCCCCEEEEE--eCCEEE
Confidence            445677888 5578887643   4777899887652 2444444322 1       1112344444467777  367799


Q ss_pred             EEeCCCCCCCceecCCCCC--C-----CCeeecceeeC-CCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc
Q 006979          169 KHSIDSKDSSPLPITPDYG--E-----PLVSYADGIFD-PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (623)
Q Consensus       169 ~~d~~~g~~~~~~Lt~~~~--~-----~~~~~~d~~~s-PdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~  240 (623)
                      ++++.++  ....+.....  .     .......+.|| |||++|++...          ..|+++++.++.   .+.+.
T Consensus       269 ~~d~~~~--~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~----------~~i~~~~~~~~~---~~~~~  333 (1045)
T 1k32_A          269 IFNPDTE--KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR----------GQAFIQDVSGTY---VLKVP  333 (1045)
T ss_dssp             EECTTTC--CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET----------TEEEEECTTSSB---EEECS
T ss_pred             EecCCce--EeeeeccCcccccccccccccccceeeecCCCCCEEEEEEc----------CEEEEEcCCCCc---eEEcc
Confidence            9998544  4444443100  0     00135678899 99999999762          569999998887   66666


Q ss_pred             cCCC-cccceeeCCCCCEEEEEEecCCCCCCCceEEE-EEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEE
Q 006979          241 SGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELW-VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV  317 (623)
Q Consensus       241 ~~~~-~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~  317 (623)
                      .... ....+.|| ||++|+|...        ...|| +++++++    ....+.+..    ..+..+.|+|||+ +++.
T Consensus       334 ~~~~~~~~~~~~s-dg~~l~~~s~--------~~~l~~~~d~~~~----~~~~l~~~~----~~~~~~~~SpDG~~la~~  396 (1045)
T 1k32_A          334 EPLRIRYVRRGGD-TKVAFIHGTR--------EGDFLGIYDYRTG----KAEKFEENL----GNVFAMGVDRNGKFAVVA  396 (1045)
T ss_dssp             CCSCEEEEEECSS-SEEEEEEEET--------TEEEEEEEETTTC----CEEECCCCC----CSEEEEEECTTSSEEEEE
T ss_pred             CCCcceEEeeeEc-CCCeEEEEEC--------CCceEEEEECCCC----CceEecCCc----cceeeeEECCCCCEEEEE
Confidence            5555 56678999 9999999873        24699 9998766    223333433    4567899999999 6665


Q ss_pred             EeCCCCeeeEEEEecCCCeEEEEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEEC-------CeEEEEEEeCC
Q 006979          318 TDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDF  389 (623)
Q Consensus       318 ~~~~~g~~~L~~~d~~~~~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~-------g~~~L~~~d~~  389 (623)
                      ++.  +  .|+++|+.+++.+.+... ...+..+.|++            |++.|++.....       +...|+++|++
T Consensus       397 ~~~--~--~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp------------DG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          397 NDR--F--EIMTVDLETGKPTVIERSREAMITDFTISD------------NSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             ETT--S--EEEEEETTTCCEEEEEECSSSCCCCEEECT------------TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             CCC--C--eEEEEECCCCceEEeccCCCCCccceEECC------------CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            544  2  788999999988777632 22334444543            889888887653       45789999999


Q ss_pred             CCceeecccCCcceEee--eecCCEEEEEEe
Q 006979          390 GHSLSLLDIPFTDIDNI--TLGNDCLFVEGA  418 (623)
Q Consensus       390 ~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~  418 (623)
                      +++.+.++.....+..+  +++++++++...
T Consensus       461 ~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          461 GRKIFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             TTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             CCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence            98888887665444333  788888887764

>2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa}

Probab=99.49  E-value=6.1e-14  Score=145.53  Aligned_cols=136  Identities=17%  Similarity=0.125  Sum_probs=106.9

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC-HHhHHHHcCceEEEEECCCCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGY  538 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~-~~~~~~a~~G~~v~~~d~rGs~~~  538 (623)
                      ..+.+.+++. +|..++++++.|.+.     +.++.|+||++||++..  ...+. ..++.|+++||.|+.+|+||.|..
T Consensus        67 ~~~~~~~~~~-~g~~~~~~~~~p~~~-----~~~~~p~vv~~hG~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s  138 (367)
T 2hdw_A           67 EHRKVTFANR-YGITLAADLYLPKNR-----GGDRLPAIVIGGPFGAV--KEQSSGLYAQTMAERGFVTLAFDPSYTGES  138 (367)
T ss_dssp             EEEEEEEECT-TSCEEEEEEEEESSC-----CSSCEEEEEEECCTTCC--TTSHHHHHHHHHHHTTCEEEEECCTTSTTS
T ss_pred             eeEEEEEecC-CCCEEEEEEEeCCCC-----CCCCCCEEEEECCCCCc--chhhHHHHHHHHHHCCCEEEEECCCCcCCC
Confidence            5678889887 899999999998762     14567999999998532  23333 367889999999999999997654


Q ss_pred             chhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      .....   .........+|+.++++++.+++.+|++||+++|+|+||++++.++ .+| .++++|+.+|.
T Consensus       139 ~~~~~---~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~  204 (367)
T 2hdw_A          139 GGQPR---NVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMY  204 (367)
T ss_dssp             CCSSS---SCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCC
T ss_pred             CCcCc---cccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEeccc
Confidence            33211   1111234679999999999999889999999999999999999999 677 58999999876

>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum}

Probab=99.48  E-value=8.7e-14  Score=141.89  Aligned_cols=133  Identities=18%  Similarity=0.109  Sum_probs=105.3

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCc-ccCcCCHHhHHHH-cCceEEEEECCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWT-SRGWAFVDVNYGGST  536 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~-~~~~~~~~~~~~a-~~G~~v~~~d~rGs~  536 (623)
                      ...+.++++.. +|..|.+++|.|.+        ++.|+||++|||++.. ....+...+..++ +.||.|+.+|||+++
T Consensus        58 ~~~~~~~i~~~-~G~~i~~~~~~P~~--------~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p  128 (317)
T 3qh4_A           58 VAVADDVVTGE-AGRPVPVRIYRAAP--------TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAP  128 (317)
T ss_dssp             CEEEEEEEECT-TSCEEEEEEEECSC--------SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred             ceEEEEEecCC-CCCeEEEEEEecCC--------CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCC
Confidence            35678888887 88899999999964        4579999999986432 3334556677777 459999999999876


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHh-cCCC----ceeEEEecccCC
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAAL-AFRD----TFKAGASLYGVS  608 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~-~~~~----~f~a~v~~~g~~  608 (623)
                      ++..           ...++|+.++++|+.++   ..+|++||+|+|+|+||++++.++ .+++    .+++.+..+|+.
T Consensus       129 ~~~~-----------p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~  197 (317)
T 3qh4_A          129 EHPY-----------PAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVL  197 (317)
T ss_dssp             TSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCC
T ss_pred             CCCC-----------chHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECcee
Confidence            5322           23478999999999986   358899999999999999999888 4433    599999999998


Q ss_pred             CHH
Q 006979          609 IPV  611 (623)
Q Consensus       609 d~~  611 (623)
                      |..
T Consensus       198 ~~~  200 (317)
T 3qh4_A          198 DDR  200 (317)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            864

>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21

Probab=99.48  E-value=2.1e-13  Score=154.43  Aligned_cols=131  Identities=15%  Similarity=0.087  Sum_probs=103.0

Q ss_pred             CCeE--EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc-------------------c-------------------
Q 006979          471 PGQK--AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-------------------R-------------------  510 (623)
Q Consensus       471 dg~~--i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~-------------------~-------------------  510 (623)
                      ||..  |.+++|.|++       .+++|+||..||......                   .                   
T Consensus       182 DG~~d~L~a~l~~P~~-------~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~  254 (763)
T 1lns_A          182 RGENDLIKIQIIRPKS-------TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKE  254 (763)
T ss_dssp             SSSCCEEEEEEEECCC-------SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCC
T ss_pred             CCCeeeEEEEEEecCC-------CCcccEEEecCCcCCCCcccccccccccccccccccCcccccccccccccccccccc
Confidence            8988  9999999987       568899997765432210                   0                   


Q ss_pred             --------CcC-----CHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh----------
Q 006979          511 --------GIL-----NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG----------  567 (623)
Q Consensus       511 --------~~~-----~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~----------  567 (623)
                              ..|     ....++|+++||+|+.+|+||.|+++..+     ..++..+.+|+.++++||.+          
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~-----~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~  329 (763)
T 1lns_A          255 LPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQ-----TSGDYQQIYSMTAVIDWLNGRARAYTSRKK  329 (763)
T ss_dssp             CCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCC-----CTTSHHHHHHHHHHHHHHTTSSCEESSTTC
T ss_pred             ccccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcC-----CCCCHHHHHHHHHHHHHHhhcccccccccc
Confidence                    011     13458999999999999999988765532     23455678999999999984          


Q ss_pred             -----CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979          568 -----SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       568 -----~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~  614 (623)
                           +++ +.+||+++|+||||++++.++ .+|+.++|+|+.+|++|+..+.
T Consensus       330 ~~~v~q~~-~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~  381 (763)
T 1lns_A          330 THEIKASW-ANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYY  381 (763)
T ss_dssp             CCEECCTT-EEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHH
T ss_pred             cccccccC-CCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHh
Confidence                 343 457999999999999999988 7888999999999999987654

>3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1}

Probab=99.48  E-value=5.4e-14  Score=140.64  Aligned_cols=139  Identities=15%  Similarity=0.087  Sum_probs=104.3

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCC-CCCCCCCCCCCEEEEecCCCCC-cccCcCCHHhHHHHcCceEEEEECCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNP-IYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~-~~~~~~~~~~Pliv~~hGg~~~-~~~~~~~~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      ...+.+.+... +|..+...+| |... ++..  +++.|+||++|||++. .....+...+..|+++||.|+.+|+||.+
T Consensus        17 ~~~~~v~~~~~-~g~~~~~~~y-p~~~~~~~~--~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~   92 (283)
T 3bjr_A           17 FQGMQVIKQKL-TATCAQLTGY-LHQPDTNAH--QTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLT   92 (283)
T ss_dssp             CCSSEEEEEEC-TTSSCEEEEE-EC----------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTT
T ss_pred             CCCcceEEeec-CCCceeEEEe-cCCcccccc--CCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCC
Confidence            45567888876 7877887888 6541 0111  4678999999998632 22234566788899999999999999976


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cCCCc-------------ee
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AFRDT-------------FK  599 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~~~~-------------f~  599 (623)
                      ..+.         ......+|+.++++|+.++.   .+|++||+|+|+|+||++++.++ .+++.             ++
T Consensus        93 ~~~~---------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~  163 (283)
T 3bjr_A           93 DQQP---------LGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPN  163 (283)
T ss_dssp             TCSS---------CBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCS
T ss_pred             cccc---------CchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCcc
Confidence            6430         11234689999999998864   37888999999999999999998 78876             89


Q ss_pred             EEEecccCCCH
Q 006979          600 AGASLYGVSIP  610 (623)
Q Consensus       600 a~v~~~g~~d~  610 (623)
                      ++|+.+|+.++
T Consensus       164 ~~v~~~p~~~~  174 (283)
T 3bjr_A          164 NVVLGYPVISP  174 (283)
T ss_dssp             SEEEESCCCCT
T ss_pred             EEEEcCCcccc
Confidence            99999999874

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.48  E-value=5.8e-12  Score=142.52  Aligned_cols=261  Identities=10%  Similarity=0.014  Sum_probs=159.9

Q ss_pred             EeCCEEEEEeCCCC----cEEEEeCCCCCCCceecCCC---CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          152 IFGDTVIFSNYKDQ----RLYKHSIDSKDSSPLPITPD---YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       152 ~s~d~l~f~~~~~~----~l~~~d~~~g~~~~~~Lt~~---~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      ..++..++.....+    .+|+.+.+.+   .+.|-+.   .+........++|||||++|+|+....+.    ....|+
T Consensus        86 ~~g~~~y~~~~~~~~~~~~~~r~~~~~~---~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~----~~~~i~  158 (693)
T 3iuj_A           86 REGRYHYFFKNDGLQNQNVLWRQQEGKP---AEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGS----DWREIH  158 (693)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEECTTSC---CEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSC----CEEEEE
T ss_pred             EECCEEEEEEEcCCCceeEEEEeCCCCC---cEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCC----ceEEEE
Confidence            34556666544332    2666554332   3333221   01112356678999999999998765432    237899


Q ss_pred             EEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCC---C--CCCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPN---M--PWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~---~--p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~  299 (623)
                      ++|+++|+   .............++|| ||+.|+|.+.+.+.   +  .+...+||+.++.++..  ...++......-
T Consensus       159 v~dl~tg~---~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~--~~~~v~~~~~~~  232 (693)
T 3iuj_A          159 LMDVESKQ---PLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE--DDRLVFGAIPAQ  232 (693)
T ss_dssp             EEETTTCS---EEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG--GCEEEESCSGGG
T ss_pred             EEECCCCC---CCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc--cceEEEecCCCC
Confidence            99999997   43332211113568999 99999999866430   0  01346799999876632  223333222000


Q ss_pred             cccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC--eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979          300 VESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (623)
Q Consensus       300 ~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~--~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~  376 (623)
                      ......+.|||||+ |++.+.......+||.+|++++  +.+.|+........+ |.            ++++.||+.++
T Consensus       233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~------------~~g~~l~~~t~  299 (693)
T 3iuj_A          233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VD------------NKGSTLYLLTN  299 (693)
T ss_dssp             CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EE------------EETTEEEEEEC
T ss_pred             CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Ee------------ccCCEEEEEEC
Confidence            02345688999999 7676665223358999998776  566776432111111 22            27889999887


Q ss_pred             ECC-eEEEEEEeCCCCce---eecccCC-cceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979          377 QNG-RSYLGILDDFGHSL---SLLDIPF-TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       377 ~~g-~~~L~~~d~~~~~~---~~lt~~~-~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                      +++ ..+|+++|++++..   +.|+... ..+ .++.+++.+++...... ..+|++++++++..+.|+
T Consensus       300 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~g~~lv~~~~~~g-~~~l~~~d~~g~~~~~l~  366 (693)
T 3iuj_A          300 RDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSGSGYLFAEYMVDA-TARVEQFDYEGKRVREVA  366 (693)
T ss_dssp             TTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEETTEEEEEEEETT-EEEEEEECTTSCEEEEEC
T ss_pred             CCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEECCEEEEEEEECC-eeEEEEEECCCCeeEEee
Confidence            654 57899999987654   5555433 334 67888999888776433 357999999877655443

>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*

Probab=99.48  E-value=1.5e-13  Score=135.75  Aligned_cols=136  Identities=13%  Similarity=0.144  Sum_probs=106.3

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+.+.+..  +|..++++++.|.+        ++.|+||++||.+.......+...+..|+++||.|+.+|+||.|...
T Consensus        21 ~~~~~~~~~--~g~~l~~~~~~p~~--------~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~   90 (270)
T 3pfb_A           21 GMATITLER--DGLQLVGTREEPFG--------EIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSD   90 (270)
T ss_dssp             EEEEEEEEE--TTEEEEEEEEECSS--------SSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTSS
T ss_pred             cceEEEecc--CCEEEEEEEEcCCC--------CCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccccCCC
Confidence            445566654  79999999998864        34689999999865533344667888899999999999999977654


Q ss_pred             hhHHHhhccCCc-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979          540 REFRERLLGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       540 ~~~~~~~~~~~g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                      ....     .+. ....+|+.++++++.++...  ++|+|+|+|+||++++.++ .+|++++++|..+|..++..
T Consensus        91 ~~~~-----~~~~~~~~~d~~~~i~~l~~~~~~--~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~  158 (270)
T 3pfb_A           91 GKFE-----NMTVLNEIEDANAILNYVKTDPHV--RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKG  158 (270)
T ss_dssp             SCGG-----GCCHHHHHHHHHHHHHHHHTCTTE--EEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHH
T ss_pred             CCCC-----ccCHHHHHHhHHHHHHHHHhCcCC--CeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccch
Confidence            4211     111 23468999999999887433  5999999999999999998 88999999999999987654

>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon}

Probab=99.47  E-value=8.3e-14  Score=141.40  Aligned_cols=131  Identities=20%  Similarity=0.249  Sum_probs=103.9

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCC-cccCcCCHHhHHHHcC-ceEEEEECCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSR-GWAFVDVNYGGST  536 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~-~~~~~~~~~~~~~a~~-G~~v~~~d~rGs~  536 (623)
                      ...+.+.++.. +| .+.+++|.|.+       ..+.|+||++||+++. .....+...+..|+++ ||.|+.+||||.+
T Consensus        46 ~~~~~~~i~~~-~g-~i~~~~~~p~~-------~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~g  116 (311)
T 2c7b_A           46 AETRDVHIPVS-GG-SIRARVYFPKK-------AAGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLAP  116 (311)
T ss_dssp             SEEEEEEEEET-TE-EEEEEEEESSS-------CSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCTT
T ss_pred             ceEEEEEecCC-CC-cEEEEEEecCC-------CCCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCCC
Confidence            46678888886 66 89999999976       4456999999998532 2333556677888876 9999999999977


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cCCC----ceeEEEecccCC
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AFRD----TFKAGASLYGVS  608 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~~~----~f~a~v~~~g~~  608 (623)
                      ++..           ....+|+.++++|+.++.   .+|++||+|+|+|+||++++.++ .+++    .++++|..+|..
T Consensus       117 ~~~~-----------~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~  185 (311)
T 2c7b_A          117 EYKF-----------PTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVV  185 (311)
T ss_dssp             TSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCC
T ss_pred             CCCC-----------CccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCcc
Confidence            6422           124689999999998763   36889999999999999999888 5554    599999999998


Q ss_pred             C
Q 006979          609 I  609 (623)
Q Consensus       609 d  609 (623)
                      |
T Consensus       186 ~  186 (311)
T 2c7b_A          186 N  186 (311)
T ss_dssp             C
T ss_pred             C
Confidence            8

>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*

Probab=99.47  E-value=9.9e-14  Score=138.07  Aligned_cols=137  Identities=15%  Similarity=0.066  Sum_probs=102.2

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCC-CCCCCCCCCCCEEEEecCCCCC-cccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNP-IYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~-~~~~~~~~~~Pliv~~hGg~~~-~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      +.+.++.  +|..+.+.+|.|... ++..  .++.|+||++|||++. .....+...+..|+++||.|+.+||||.|..+
T Consensus         5 ~~~~~~~--~~~~~~~~~~~p~~~~~~~~--~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~   80 (277)
T 3bxp_A            5 EQRTLNT--AAHPFQITAYWLDQISDFET--AVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQ   80 (277)
T ss_dssp             EEEEECS--TTCCEEEEEEEECCCCSSSC--CCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTC
T ss_pred             EEEEecc--CCCcceEEEEeCCccccccc--CCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCC
Confidence            4566644  577788888888731 0111  5678999999997533 22334556788899999999999999955322


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cC--------------CCceeEE
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AF--------------RDTFKAG  601 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~--------------~~~f~a~  601 (623)
                      ..         .....+|+.++++++.++.   .+|++||+|+|+|+||++++.++ .+              +..++++
T Consensus        81 ~~---------~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~  151 (277)
T 3bxp_A           81 SV---------YPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAI  151 (277)
T ss_dssp             CC---------TTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEE
T ss_pred             cc---------CchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEE
Confidence            21         1235789999999998763   27889999999999999999998 53              7789999


Q ss_pred             EecccCCCHH
Q 006979          602 ASLYGVSIPV  611 (623)
Q Consensus       602 v~~~g~~d~~  611 (623)
                      |+.+|+.|+.
T Consensus       152 v~~~p~~~~~  161 (277)
T 3bxp_A          152 ILGYPVIDLT  161 (277)
T ss_dssp             EEESCCCBTT
T ss_pred             EEeCCcccCC
Confidence            9999998743

>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A

Probab=99.47  E-value=1.8e-13  Score=138.44  Aligned_cols=134  Identities=16%  Similarity=0.123  Sum_probs=100.3

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCC-cccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~-~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ...+.+. . ++  +...+|.|++.      .++.|+||++|||++. .....+...++.|+++||+|+.+||||.++..
T Consensus        58 ~~~i~y~-~-~~--~~~~~~~p~~~------~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~  127 (303)
T 4e15_A           58 VDHLRYG-E-GR--QLVDVFYSEKT------TNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVT  127 (303)
T ss_dssp             EEEEECS-S-TT--CEEEEEECTTC------CTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSC
T ss_pred             eeeeccC-C-CC--cEEEEEecCCC------CCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCC
Confidence            3445554 3 34  44556667541      4678999999998643 33345667789999999999999999977643


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhC-CCCCCCceEEEEcChHHHHHHHHh-cCC-------CceeEEEecccCCCH
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAAL-AFR-------DTFKAGASLYGVSIP  610 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~-------~~f~a~v~~~g~~d~  610 (623)
                      ..           ...+|+.++++|+.+. ...+++||+|+|||+||++++.++ ...       +.++++|+.+|+.|+
T Consensus       128 ~~-----------~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~  196 (303)
T 4e15_A          128 LE-----------QLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDL  196 (303)
T ss_dssp             HH-----------HHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCC
T ss_pred             hh-----------HHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeecc
Confidence            21           2368999999999873 235689999999999999999888 432       379999999999998


Q ss_pred             HHhhh
Q 006979          611 VIISE  615 (623)
Q Consensus       611 ~~~~~  615 (623)
                      ..+..
T Consensus       197 ~~~~~  201 (303)
T 4e15_A          197 RELSN  201 (303)
T ss_dssp             HHHHT
T ss_pred             Hhhhc
Confidence            77654

>3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp}

Probab=99.46  E-value=1.1e-12  Score=129.12  Aligned_cols=126  Identities=15%  Similarity=0.113  Sum_probs=100.6

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCC-cccCcCC-HHhHHHHcCceEEEEECCCCCCCCc
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILN-LSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~-~~~~~~~-~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ....+... +|..+++.+|.|..       +++.|+||++||++.. .....+. ..++.++++ |.|+.+|+||.+...
T Consensus         4 ~~~~~~~~-dg~~l~~~~~~p~~-------~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~   74 (275)
T 3h04_A            4 IKYKVITK-DAFALPYTIIKAKN-------QPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVS   74 (275)
T ss_dssp             EEEEEECT-TSCEEEEEEECCSS-------SSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSC
T ss_pred             eEEEEecC-CcEEEEEEEEccCC-------CCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCccc
Confidence            45667776 89999999999975       4567999999998632 2223344 667777777 999999999876432


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCH
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~  610 (623)
                      .           ....+|+.++++++.++  ++.++|+|+|||+||++++.++.. +.++++|..+|..++
T Consensus        75 ~-----------~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~-~~v~~~v~~~~~~~~  131 (275)
T 3h04_A           75 L-----------DCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD-RDIDGVIDFYGYSRI  131 (275)
T ss_dssp             H-----------HHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH-SCCSEEEEESCCSCS
T ss_pred             c-----------chhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc-CCccEEEeccccccc
Confidence            2           12478999999999988  667899999999999999999944 789999999999876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.46  E-value=2.8e-11  Score=123.22  Aligned_cols=242  Identities=11%  Similarity=0.064  Sum_probs=142.1

Q ss_pred             eEEEeCC--EEEEEeCCCCcEEEEeCCCCCCC-ceecCCCCCCCCeeecc-eeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          149 AFRIFGD--TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYAD-GIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       149 ~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~-~~~Lt~~~~~~~~~~~d-~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      ..+++++  .+++....++.|+++|+.++ .. .+.++..     ..... +.|+|||++|+ +......     ...|+
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~~-----~~~~~~~~~s~dg~~l~-~~~~~~~-----~~~i~  111 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLE-PPKVVAIQEG-----QSSMADVDITPDDQFAV-TVTGLNH-----PFNMQ  111 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSS-SCEEEEEEEC-----SSCCCCEEECTTSSEEE-ECCCSSS-----SCEEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCC-ceeEEecccC-----CCCccceEECCCCCEEE-EecCCCC-----cccEE
Confidence            3455554  57777776788999999877 22 3344432     12234 78999999988 4332211     13799


Q ss_pred             EEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee--eEEEcCCCCCcccc
Q 006979          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK--RVCVAGFDPTIVES  302 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~--~~~~~~~~~~~~~~  302 (623)
                      ++|+++++   ...............|||||++|++.....      ...|++++++..+.+..  ...+.. .    ..
T Consensus       112 v~d~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~-~----~~  177 (331)
T 3u4y_A          112 SYSFLKNK---FISTIPIPYDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQEFISG-G----TR  177 (331)
T ss_dssp             EEETTTTE---EEEEEECCTTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEEEEECS-S----SS
T ss_pred             EEECCCCC---eEEEEECCCCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCCccccC-C----CC
Confidence            99999886   333322223345688999999988775432      22377777776543211  222222 2    34


Q ss_pred             CcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE---EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                      +..+.|+|||+.+|++..  +...|..+|+.+++.   ....+......         .+.+.   |+++.+|++..  +
T Consensus       178 ~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~---------~~~~s---pdg~~l~v~~~--~  241 (331)
T 3u4y_A          178 PFNITFTPDGNFAFVANL--IGNSIGILETQNPENITLLNAVGTNNLPG---------TIVVS---RDGSTVYVLTE--S  241 (331)
T ss_dssp             EEEEEECTTSSEEEEEET--TTTEEEEEECSSTTSCEEEEEEECSSCCC---------CEEEC---TTSSEEEEECS--S
T ss_pred             ccceEECCCCCEEEEEeC--CCCeEEEEECCCCcccceeeeccCCCCCc---------eEEEC---CCCCEEEEEEc--C
Confidence            567899999994455554  234577788877764   22222221122         23333   38887777653  4


Q ss_pred             eEEEEEEeCCCCceeeccc---C-----Ccce--E--eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          380 RSYLGILDDFGHSLSLLDI---P-----FTDI--D--NITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       380 ~~~L~~~d~~~~~~~~lt~---~-----~~~v--~--~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ...|+++|+++++++.+..   .     ....  .  .++++++++++....   ...+.++++++..
T Consensus       242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~  306 (331)
T 3u4y_A          242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI---SRELKVFTISGKV  306 (331)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT---TTEEEEEETTSCE
T ss_pred             CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC---CCcEEEEEecCCc
Confidence            5668899999887743321   1     1111  1  337778877766542   2467778876654

>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A

Probab=99.46  E-value=1.9e-13  Score=140.55  Aligned_cols=133  Identities=17%  Similarity=0.094  Sum_probs=100.1

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc---CCHHhHHHH-cCceEEEEECCCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSIQYWT-SRGWAFVDVNYGGST  536 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~---~~~~~~~~a-~~G~~v~~~d~rGs~  536 (623)
                      .+.+.+..   +..+.+.+|.|++.. .  ++++.|+||++|||+.......   |...+..|+ ++||.|+.+||||.+
T Consensus        55 ~~~v~~~~---~~~~~~~~~~P~~~~-~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~  128 (338)
T 2o7r_A           55 TKDLALNP---LHNTFVRLFLPRHAL-Y--NSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAP  128 (338)
T ss_dssp             EEEEEEET---TTTEEEEEEEEGGGG-G--SSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred             EEEEEecC---CCCeEEEEEeCCCCC-c--CCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCC
Confidence            45566654   445777778886520 0  1467899999999864333222   556677888 789999999999966


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCC------CCCCCceEEEEcChHHHHHHHHh-cCCC--------ceeEE
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSG------KADEKRLCITGGSAGGYTTLAAL-AFRD--------TFKAG  601 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~------~~d~~rv~i~G~S~GG~~~~~~~-~~~~--------~f~a~  601 (623)
                      ++..           ...++|+.++++|+.++.      .+|++||+|+|+|+||++++.++ ++++        +++++
T Consensus       129 ~~~~-----------~~~~~d~~~~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~  197 (338)
T 2o7r_A          129 EHRL-----------PAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGL  197 (338)
T ss_dssp             TTCT-----------THHHHHHHHHHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEE
T ss_pred             CCCC-----------chHHHHHHHHHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEE
Confidence            4321           234789999999999873      26789999999999999999998 7777        89999


Q ss_pred             EecccCCCH
Q 006979          602 ASLYGVSIP  610 (623)
Q Consensus       602 v~~~g~~d~  610 (623)
                      |..+|..+.
T Consensus       198 vl~~p~~~~  206 (338)
T 2o7r_A          198 VLDEPGFGG  206 (338)
T ss_dssp             EEESCCCCC
T ss_pred             EEECCccCC
Confidence            999998764

>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2

Probab=99.46  E-value=1.5e-13  Score=142.82  Aligned_cols=134  Identities=16%  Similarity=0.115  Sum_probs=103.7

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCC-cccC--cCCHHhHHHHcCceEEEEECCCCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARG--ILNLSIQYWTSRGWAFVDVNYGGSTG  537 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~-~~~~--~~~~~~~~~a~~G~~v~~~d~rGs~~  537 (623)
                      .+.+.++.. +|..+++++|.|.+.      .++.|+||++|||+.. ....  .+......|+++||+|+.+||||.++
T Consensus        82 ~~~~~~~~~-~g~~l~~~v~~p~~~------~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg  154 (361)
T 1jkm_A           82 TSTETILGV-DGNEITLHVFRPAGV------EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWT  154 (361)
T ss_dssp             EEEEEEECT-TSCEEEEEEEEETTC------CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEE
T ss_pred             eeeeeeecC-CCCeEEEEEEeCCCC------CCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCC
Confidence            456677776 777899999999762      2367999999998632 2222  34456888898999999999999864


Q ss_pred             CchhHHHhhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-c-----CCCceeEEEecccCC
Q 006979          538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-A-----FRDTFKAGASLYGVS  608 (623)
Q Consensus       538 ~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~-----~~~~f~a~v~~~g~~  608 (623)
                      +..       ...+....+|+.++++|+.++.   .+|  ||+|+|+|+||++++.++ .     +|+.++++|+.+|+.
T Consensus       155 ~~~-------~~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~  225 (361)
T 1jkm_A          155 AEG-------HHPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYI  225 (361)
T ss_dssp             TTE-------ECCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCC
T ss_pred             CCC-------CCCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCcc
Confidence            421       1223445799999999998862   244  999999999999999888 5     677999999999998


Q ss_pred             CH
Q 006979          609 IP  610 (623)
Q Consensus       609 d~  610 (623)
                      |.
T Consensus       226 ~~  227 (361)
T 1jkm_A          226 SG  227 (361)
T ss_dssp             CC
T ss_pred             cc
Confidence            87

>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A*

Probab=99.46  E-value=2.9e-13  Score=140.08  Aligned_cols=136  Identities=14%  Similarity=0.124  Sum_probs=101.1

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCC----------CCCCCCCCCEEEEecCCCCCcccC-c--CCHHhHHHH-cCceE
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIY----------QASPEEKPPLLVKSHGGPTSEARG-I--LNLSIQYWT-SRGWA  526 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~----------~~~~~~~~Pliv~~hGg~~~~~~~-~--~~~~~~~~a-~~G~~  526 (623)
                      .+.+.+..   +..+.+.+|.|++...          .+..+++.|+||++|||+...... .  |...+..|+ ++||.
T Consensus        72 ~~dv~~~~---~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~g~~  148 (351)
T 2zsh_A           72 SFDVLIDR---RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCV  148 (351)
T ss_dssp             EEEEEEET---TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTSE
T ss_pred             EEEEEecC---CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHcCCE
Confidence            34555543   4457788888876210          000146789999999986533222 2  556778888 78999


Q ss_pred             EEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCC----CCCCC-ceEEEEcChHHHHHHHHh-cCCC---c
Q 006979          527 FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG----KADEK-RLCITGGSAGGYTTLAAL-AFRD---T  597 (623)
Q Consensus       527 v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~----~~d~~-rv~i~G~S~GG~~~~~~~-~~~~---~  597 (623)
                      |+.+||||.+++..           ...++|+.++++|+.++.    .+|++ ||+|+|+|+||++++.++ .+++   .
T Consensus       149 vv~~d~rg~~~~~~-----------~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~~~~  217 (351)
T 2zsh_A          149 VVSVNYRRAPENPY-----------PCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID  217 (351)
T ss_dssp             EEEECCCCTTTSCT-----------THHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTTTCC
T ss_pred             EEEecCCCCCCCCC-----------chhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhccCCC
Confidence            99999999765321           234789999999999875    48999 999999999999999988 7777   8


Q ss_pred             eeEEEecccCCCH
Q 006979          598 FKAGASLYGVSIP  610 (623)
Q Consensus       598 f~a~v~~~g~~d~  610 (623)
                      ++++|+.+|..+.
T Consensus       218 v~~~vl~~p~~~~  230 (351)
T 2zsh_A          218 VLGNILLNPMFGG  230 (351)
T ss_dssp             CCEEEEESCCCCC
T ss_pred             eeEEEEECCccCC
Confidence            9999999998763

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.45  E-value=1.4e-11  Score=128.60  Aligned_cols=238  Identities=11%  Similarity=0.040  Sum_probs=151.6

Q ss_pred             eEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          149 AFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       149 ~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      +.+++++  .+++....++.|+++|+.++ .....+...     .......|+|||++|++...+.        ..|+++
T Consensus        36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~~--------~~v~v~  101 (391)
T 1l0q_A           36 GAVISPDGTKVYVANAHSNDVSIIDTATN-NVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS--------STLSVI  101 (391)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEETTTT-EEEEEEECS-----SSEEEEEECTTSSEEEEEETTT--------TEEEEE
T ss_pred             eEEECCCCCEEEEECCCCCeEEEEECCCC-eEEEEEECC-----CCccceEECCCCCEEEEEECCC--------CEEEEE
Confidence            4555555  56677767788999999876 222333332     2456788999999988765432        569999


Q ss_pred             EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                      |+.+++   ...............|+|||++|++....       ...|+++|+.++.   ....+...     ..+..+
T Consensus       102 d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------~~~v~~~d~~~~~---~~~~~~~~-----~~~~~~  163 (391)
T 1l0q_A          102 DTTSNT---VAGTVKTGKSPLGLALSPDGKKLYVTNNG-------DKTVSVINTVTKA---VINTVSVG-----RSPKGI  163 (391)
T ss_dssp             ETTTTE---EEEEEECSSSEEEEEECTTSSEEEEEETT-------TTEEEEEETTTTE---EEEEEECC-----SSEEEE
T ss_pred             ECCCCe---EEEEEeCCCCcceEEECCCCCEEEEEeCC-------CCEEEEEECCCCc---EEEEEecC-----CCcceE
Confidence            999886   43333333345668899999999777632       3469999988762   23333322     234678


Q ss_pred             eeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                      .|+|||+.++++..  +...|+.+|+.+++.............         +.+.   ++++.+++.........|+++
T Consensus       164 ~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~---------~~~~---~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          164 AVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSG---------IAVN---PEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             EECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEE---------EEEC---TTSSEEEEEEECSSCCEEEEE
T ss_pred             EECCCCCEEEEEeC--CCCEEEEEECCCCeEEEEEecCCCccc---------eEEC---CCCCEEEEEecCcCCCcEEEE
Confidence            99999995544443  224588889888875554433222222         2222   378888877754355678888


Q ss_pred             eCCCCcee-ecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          387 DDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       387 d~~~~~~~-~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      |+.+++.. .+..+. .+..+  +++++.+++.....   ..++++++.+++.
T Consensus       230 d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d---~~v~v~d~~~~~~  278 (391)
T 1l0q_A          230 DTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFX---NTVSVIDTATNTI  278 (391)
T ss_dssp             ETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTT---TEEEEEETTTTEE
T ss_pred             ECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCC---CEEEEEECCCCcE
Confidence            98877654 333332 33333  67777777765422   5788899888764

>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A

Probab=99.45  E-value=1.3e-13  Score=140.82  Aligned_cols=134  Identities=19%  Similarity=0.191  Sum_probs=104.3

Q ss_pred             CcEEEEeecCCCCe-EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCC-cccCcCCHHhHHHHc-CceEEEEECCCCCC
Q 006979          460 LPELIEFPTEVPGQ-KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTS-RGWAFVDVNYGGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~-~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~-~~~~~~~~~~~~~a~-~G~~v~~~d~rGs~  536 (623)
                      ..+.+.+++. +|. .+.+++|.|.+.      .++.|+||++|||++. .....+......|++ .||.|+.+||||.+
T Consensus        50 ~~~~~~i~~~-~g~~~l~~~~~~P~~~------~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~  122 (323)
T 1lzl_A           50 SLRELSAPGL-DGDPEVKIRFVTPDNT------AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAP  122 (323)
T ss_dssp             EEEEEEECCS-TTCCCEEEEEEEESSC------CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred             eEEEEEecCC-CCCceeEEEEEecCCC------CCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCC
Confidence            4677888887 776 799999999751      3567999999998633 233345567777887 59999999999976


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cCCC----ceeEEEecccCC
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AFRD----TFKAGASLYGVS  608 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~~~----~f~a~v~~~g~~  608 (623)
                      ++..           ....+|+.++++|+.++.   .+|++||+|+|+|+||++++.++ .+++    .++++|..+|+.
T Consensus       123 ~~~~-----------~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~  191 (323)
T 1lzl_A          123 ETTF-----------PGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPEL  191 (323)
T ss_dssp             TSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCC
T ss_pred             CCCC-----------CchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCcc
Confidence            5421           124789999999998752   37889999999999999999888 5544    599999999998


Q ss_pred             CHH
Q 006979          609 IPV  611 (623)
Q Consensus       609 d~~  611 (623)
                      |+.
T Consensus       192 ~~~  194 (323)
T 1lzl_A          192 DDR  194 (323)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            764

>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A*

Probab=99.44  E-value=5.6e-14  Score=135.95  Aligned_cols=133  Identities=16%  Similarity=0.167  Sum_probs=100.6

Q ss_pred             EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhH
Q 006979          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF  542 (623)
Q Consensus       463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~  542 (623)
                      .+.+++. +|..++++++.|.+        ++.|+||++||....  ...+...++.|+++||.|+.+|+||.+..+...
T Consensus         5 ~~~~~~~-~g~~l~~~~~~p~~--------~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~   73 (236)
T 1zi8_A            5 GISIQSY-DGHTFGALVGSPAK--------APAPVIVIAQDIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTAL   73 (236)
T ss_dssp             TCCEECT-TSCEECEEEECCSS--------CSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBC
T ss_pred             eEEEecC-CCCeEEEEEECCCC--------CCCCEEEEEcCCCCC--CHHHHHHHHHHHhCCcEEEeccccccCCCcccc
Confidence            3556666 89999999998863        457999999998433  335667788899999999999999877654310


Q ss_pred             -------HH----hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          543 -------RE----RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       543 -------~~----~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                             ..    ......-....+|+.++++++.++..++ +||+++|+|+||++++.++ .+|  ++++++.+|...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~  149 (236)
T 1zi8_A           74 DPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGL  149 (236)
T ss_dssp             CTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSG
T ss_pred             cccchhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCccc
Confidence                   00    0011111234689999999999887665 6999999999999999999 667  999999998754

>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A

Probab=99.44  E-value=2.6e-13  Score=143.54  Aligned_cols=133  Identities=14%  Similarity=0.056  Sum_probs=102.7

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+.+.++.  +|..++++++.|.+       +++.|+||++||.+... ...+......++++||.|+.+|+||.|...
T Consensus       167 ~~~~v~i~~--~g~~l~~~~~~P~~-------~~~~P~vv~~hG~~~~~-~~~~~~~~~~l~~~G~~V~~~D~~G~G~s~  236 (415)
T 3mve_A          167 IIKQLEIPF--EKGKITAHLHLTNT-------DKPHPVVIVSAGLDSLQ-TDMWRLFRDHLAKHDIAMLTVDMPSVGYSS  236 (415)
T ss_dssp             EEEEEEEEC--SSSEEEEEEEESCS-------SSCEEEEEEECCTTSCG-GGGHHHHHHTTGGGTCEEEEECCTTSGGGT
T ss_pred             CeEEEEEEE--CCEEEEEEEEecCC-------CCCCCEEEEECCCCccH-HHHHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence            456788877  58889999999976       56789999999984321 223334567888999999999999965432


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ..   .    ..........++++++.+.+.+|++||+|+|+|+||++++.++ .+|++++++|+.+|+.+
T Consensus       237 ~~---~----~~~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~  300 (415)
T 3mve_A          237 KY---P----LTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIH  300 (415)
T ss_dssp             TS---C----CCSCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCS
T ss_pred             CC---C----CCCCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccc
Confidence            21   1    1111223446788899998889999999999999999999999 68999999999999865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.44  E-value=4.3e-11  Score=123.77  Aligned_cols=275  Identities=9%  Similarity=0.022  Sum_probs=151.1

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCc
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~  166 (623)
                      ...+..+.++| ++.+|.......+.++..+|..+..+| +.+.+....      ........+++.++.+++.+..++.
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-~~~~~~~~~------~~~~~p~~~~~dg~~l~~~~~~~~~  121 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-TLHLLNTQK------TMGADPCYLTTNGKNIVTANYSGGS  121 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-EEEEEEEEE------CSSSCEEEEEECSSEEEEEETTTTE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-cEEEeeEec------cCCCCcEEEEECCCEEEEEECCCCE
Confidence            45567889999 777887765432346777787765422 222221100      0001122344434467777767788


Q ss_pred             EEEEeCCCCCCCceecCC----C-CCC-----CCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC--CC---
Q 006979          167 LYKHSIDSKDSSPLPITP----D-YGE-----PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN--GQ---  231 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~----~-~~~-----~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~--~g---  231 (623)
                      +.+++++.. .....+..    . ...     .........|||||++|++.....        ..+++++++  ++   
T Consensus       122 v~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--------~~v~v~~~~~~~~~~~  192 (361)
T 3scy_A          122 ITVFPIGQD-GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT--------DQIHKFNINPNANADN  192 (361)
T ss_dssp             EEEEEBCTT-SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT--------TEEEEEEECTTCCTTT
T ss_pred             EEEEEeCCC-CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC--------CEEEEEEEcCCCCccc
Confidence            999988643 12222211    0 000     011123478999999887765322        345555554  33   


Q ss_pred             -C-cccc---eec-ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          232 -N-IQEP---KVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       232 -~-~~~~---~~l-~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                       + ....   ..+ ...........|||||++|++....       ...|.+++++++ .+.....+.... ........
T Consensus       193 ~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-------~~~v~v~~~~~g-~~~~~~~~~~~~-~~~~~~~~  263 (361)
T 3scy_A          193 KEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-------GGTVIAFRYADG-MLDEIQTVAADT-VNAQGSGD  263 (361)
T ss_dssp             CCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-------TCEEEEEEEETT-EEEEEEEEESCS-SCCCCEEE
T ss_pred             ccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-------CCeEEEEEecCC-ceEEeEEEecCC-CCCCCccc
Confidence             1 1000   111 1222223457899999988776522       335888888754 211122222111 00023457


Q ss_pred             ceeCCCCcEEEEEeCC-CCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          306 PKWSSKGELFFVTDRK-NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~-~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      +.|+|||+.+|++++. .+.-.+|.+++.+++.+.+.....  +.     ....+.|.   |+++.|++....++.-.+|
T Consensus       264 i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~-----~~~~~~~s---pdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          264 IHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GI-----HPRNFIIT---PNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SS-----CCCEEEEC---TTSCEEEEEETTTTEEEEE
T ss_pred             EEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CC-----CCceEEEC---CCCCEEEEEECCCCCEEEE
Confidence            8999999966677763 355667777666777665543211  10     11233343   3888888877677888899


Q ss_pred             EEeCCCCceeecc
Q 006979          385 ILDDFGHSLSLLD  397 (623)
Q Consensus       385 ~~d~~~~~~~~lt  397 (623)
                      .+|.++++++.+.
T Consensus       334 ~~d~~~g~~~~~~  346 (361)
T 3scy_A          334 ERDQATGLLTDIK  346 (361)
T ss_dssp             EECTTTCCEEECS
T ss_pred             EEECCCCcEeecc
Confidence            9999999887664

>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV}

Probab=99.44  E-value=1.6e-13  Score=137.46  Aligned_cols=129  Identities=16%  Similarity=0.102  Sum_probs=101.1

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCch
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR  540 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~  540 (623)
                      .+.+.++.  +|..+.++++.|.          +.|+||++||++.  ....+...+..|+++||.|+.+|+||.|.+..
T Consensus         6 ~~~~~~~~--~g~~l~~~~~~p~----------~~p~vv~~HG~~~--~~~~~~~~~~~l~~~g~~v~~~d~~G~g~s~~   71 (290)
T 3ksr_A            6 LSSIEIPV--GQDELSGTLLTPT----------GMPGVLFVHGWGG--SQHHSLVRAREAVGLGCICMTFDLRGHEGYAS   71 (290)
T ss_dssp             EEEEEEEE--TTEEEEEEEEEEE----------SEEEEEEECCTTC--CTTTTHHHHHHHHTTTCEEECCCCTTSGGGGG
T ss_pred             eeeEEecC--CCeEEEEEEecCC----------CCcEEEEeCCCCC--CcCcHHHHHHHHHHCCCEEEEeecCCCCCCCC
Confidence            45677776  6889999999884          3589999999954  34466778899999999999999999765543


Q ss_pred             hHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       541 ~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ...    ........+|+.++++++.+++.+|+++|+|+|||+||++++.++ .+|  +++++..+|..+
T Consensus        72 ~~~----~~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~  135 (290)
T 3ksr_A           72 MRQ----SVTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALY  135 (290)
T ss_dssp             GTT----TCBHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCC
T ss_pred             Ccc----cccHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchh
Confidence            211    011123468999999999999889999999999999999999999 666  677777777654

>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A*

Probab=99.44  E-value=6.5e-13  Score=131.71  Aligned_cols=139  Identities=17%  Similarity=0.128  Sum_probs=98.8

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-----CCHHhHHHHcC----ceEEEE
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-----LNLSIQYWTSR----GWAFVD  529 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-----~~~~~~~~a~~----G~~v~~  529 (623)
                      .+.+.+.+.+..+|..+.+++|.|.+  ++.  ++++|+||++||++.......     +...++.|+++    ||+|+.
T Consensus        30 g~~~~~~~~s~~~~~~~~~~v~~P~~--~~~--~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~  105 (268)
T 1jjf_A           30 GQVVNISYFSTATNSTRPARVYLPPG--YSK--DKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVT  105 (268)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECTT--CCT--TSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEE
T ss_pred             ceEEEEEEeccccCCceEEEEEeCCC--CCC--CCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEE
Confidence            34566777764357889999999987  433  577899999999864332111     11236667776    599999


Q ss_pred             ECCCCCCCC-chhHHHhhccCCccchHHH-HHHHHHHHHhCCCC--CCCceEEEEcChHHHHHHHHh-cCCCceeEEEec
Q 006979          530 VNYGGSTGY-GREFRERLLGRWGIVDVND-CCSCATFLVGSGKA--DEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASL  604 (623)
Q Consensus       530 ~d~rGs~~~-g~~~~~~~~~~~g~~~~~D-~~~~~~~l~~~~~~--d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~  604 (623)
                      +|+++.+.. ...+.         ...+| +.++++++.++..+  |++||+|+|+|+||++++.++ .+|++|+++++.
T Consensus       106 ~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~  176 (268)
T 1jjf_A          106 PNTNAAGPGIADGYE---------NFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPI  176 (268)
T ss_dssp             ECCCCCCTTCSCHHH---------HHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEE
T ss_pred             eCCCCCCccccccHH---------HHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEe
Confidence            999985431 11111         11233 45667777765444  899999999999999999998 889999999999


Q ss_pred             ccCCCH
Q 006979          605 YGVSIP  610 (623)
Q Consensus       605 ~g~~d~  610 (623)
                      +|..++
T Consensus       177 s~~~~~  182 (268)
T 1jjf_A          177 SAAPNT  182 (268)
T ss_dssp             SCCTTS
T ss_pred             CCCCCC
Confidence            998764

>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2

Probab=99.44  E-value=9.3e-13  Score=129.88  Aligned_cols=129  Identities=16%  Similarity=0.097  Sum_probs=99.1

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCC-CcccCcCCHHhHHHHcCceEEEEECCCCCCCCch
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT-SEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR  540 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~-~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~  540 (623)
                      +...++.. ++..+...+|.|.+        ++.|+||++|||++ ......+...++.|+++||.|+.+|+||++.+..
T Consensus        39 ~~~~i~~~-~~~~~~~~~~~p~~--------~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~~  109 (262)
T 2pbl_A           39 ARLNLSYG-EGDRHKFDLFLPEG--------TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRI  109 (262)
T ss_dssp             EEEEEESS-SSTTCEEEEECCSS--------SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSCH
T ss_pred             CccccccC-CCCCceEEEEccCC--------CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCCh
Confidence            34444443 45556677787753        45689999999853 2344466778889999999999999999764321


Q ss_pred             hHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC------CCceeEEEecccCCCHHHh
Q 006979          541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF------RDTFKAGASLYGVSIPVII  613 (623)
Q Consensus       541 ~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~------~~~f~a~v~~~g~~d~~~~  613 (623)
                                 ....+|+.++++++.++..   ++|+|+|||+||++++.++ .+      +++++++|..+|+.|+..+
T Consensus       110 -----------~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~  175 (262)
T 2pbl_A          110 -----------SEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPL  175 (262)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGG
T ss_pred             -----------HHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHH
Confidence                       1237899999999988643   7999999999999999999 55      8899999999999887544

>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens}

Probab=99.41  E-value=9.9e-13  Score=134.85  Aligned_cols=130  Identities=15%  Similarity=0.140  Sum_probs=102.7

Q ss_pred             EeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHH
Q 006979          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE  544 (623)
Q Consensus       465 ~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~  544 (623)
                      .+... +|..++++++.|.+        ++.|+||++||.+..  ...|...+..|+++||.|+.+|+||.|.....   
T Consensus        39 ~~~~~-dg~~l~~~~~~p~~--------~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~---  104 (342)
T 3hju_A           39 HLVNA-DGQYLFCRYWKPTG--------TPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVGHGQSEGE---  104 (342)
T ss_dssp             EEECT-TSCEEEEEEECCSS--------CCSEEEEEECCTTCC--GGGGHHHHHHHHTTTEEEEEECCTTSTTSCSS---
T ss_pred             eEEcc-CCeEEEEEEeCCCC--------CCCcEEEEECCCCcc--cchHHHHHHHHHhCCCeEEEEcCCCCcCCCCc---
Confidence            56666 89999999998864        446899999999543  33677788999999999999999997665432   


Q ss_pred             hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       545 ~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      ......-....+|+.++++++..+  .+.++|+|+|+|+||++++.++ .+|++++++|..+|..+.
T Consensus       105 ~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~  169 (342)
T 3hju_A          105 RMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLA  169 (342)
T ss_dssp             TTCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSC
T ss_pred             CCCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECccccc
Confidence            111111123478999999999877  4567999999999999999999 899999999999998654

>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2

Probab=99.41  E-value=4.2e-13  Score=136.36  Aligned_cols=129  Identities=21%  Similarity=0.231  Sum_probs=100.5

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCC-cccCcCCHHhHHHH-cCceEEEEECCCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWT-SRGWAFVDVNYGGSTG  537 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~-~~~~~~~~~~~~~a-~~G~~v~~~d~rGs~~  537 (623)
                      ..+.+.++.. +| .+.+++| + .       .++.|+||++|||++. .....+......|+ +.||.|+.+||||.+.
T Consensus        55 ~~~~~~i~~~-~g-~i~~~~y-~-~-------~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~  123 (311)
T 1jji_A           55 RVEDRTIKGR-NG-DIRVRVY-Q-Q-------KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPE  123 (311)
T ss_dssp             EEEEEEEEET-TE-EEEEEEE-E-S-------SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTT
T ss_pred             eEEEEEecCC-CC-cEEEEEE-c-C-------CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCC
Confidence            5678888886 66 7888888 3 2       3457999999999632 22334566778888 6899999999999765


Q ss_pred             CchhHHHhhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cCCCc----eeEEEecccCCC
Q 006979          538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AFRDT----FKAGASLYGVSI  609 (623)
Q Consensus       538 ~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~~~~----f~a~v~~~g~~d  609 (623)
                      +..           ....+|+.++++|+.++.   .+|++||+|+|+|+||++++.++ .+++.    ++++|..+|..|
T Consensus       124 ~~~-----------p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~  192 (311)
T 1jji_A          124 HKF-----------PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVN  192 (311)
T ss_dssp             SCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCC
T ss_pred             CCC-----------CCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccC
Confidence            422           224689999999998762   37888999999999999999888 55554    999999999987


Q ss_pred             H
Q 006979          610 P  610 (623)
Q Consensus       610 ~  610 (623)
                      +
T Consensus       193 ~  193 (311)
T 1jji_A          193 F  193 (311)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A*

Probab=99.41  E-value=1.2e-12  Score=131.96  Aligned_cols=138  Identities=16%  Similarity=0.085  Sum_probs=96.8

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-----cCCHHhHHHHcC----ceEEEE
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----ILNLSIQYWTSR----GWAFVD  529 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-----~~~~~~~~~a~~----G~~v~~  529 (623)
                      .+.+.+++.+. ++ .+.+++|.|.+  |++  ++++|+||++||++......     .+...++.++++    ||+|+.
T Consensus        39 g~~~~~~~~s~-~~-~~~~~vy~P~~--~~~--~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~  112 (297)
T 1gkl_A           39 GRIVKETYTGI-NG-TKSLNVYLPYG--YDP--NKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVT  112 (297)
T ss_dssp             CEEEEEEEEET-TE-EEEEEEEECTT--CCT--TSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEE
T ss_pred             ceEEEEEEEcC-CC-EEEEEEEeCCC--CCC--CCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEE
Confidence            45667888886 54 89999999987  543  57899999999986533211     112345666666    599999


Q ss_pred             ECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCC---------CCCCCceEEEEcChHHHHHHHHh-cCCCcee
Q 006979          530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---------KADEKRLCITGGSAGGYTTLAAL-AFRDTFK  599 (623)
Q Consensus       530 ~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~---------~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~  599 (623)
                      +|++|+.+.+..|.+        ...+|+...++......         ..|+++++|+|+||||++++.++ .+|++|+
T Consensus       113 pd~~~~~~~~~~~~~--------~~~~~l~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~  184 (297)
T 1gkl_A          113 PTFNGGNCTAQNFYQ--------EFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVA  184 (297)
T ss_dssp             CCSCSTTCCTTTHHH--------HHHHTHHHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCC
T ss_pred             ecCcCCccchHHHHH--------HHHHHHHHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhh
Confidence            999986544433321        11234444444332221         14778999999999999999998 8899999


Q ss_pred             EEEecccCCCH
Q 006979          600 AGASLYGVSIP  610 (623)
Q Consensus       600 a~v~~~g~~d~  610 (623)
                      ++++++|...+
T Consensus       185 ~~v~~sg~~~~  195 (297)
T 1gkl_A          185 YFMPLSGDYWY  195 (297)
T ss_dssp             EEEEESCCCCB
T ss_pred             eeeEecccccc
Confidence            99999998643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.40  E-value=7.4e-11  Score=124.90  Aligned_cols=293  Identities=8%  Similarity=-0.029  Sum_probs=167.0

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcE
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL  167 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l  167 (623)
                      ..+..+.++|++.++.....   ++...+|.  ..++ +....++... ..  .+.....+..++++ .++++...++.|
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~---~~~i~~~d--~~~g-~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~~~s~~~d~~v  193 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLE---DEGMDVLD--INSG-QTVRLSPPEK-YK--KKLGFVETISIPEHNELWVSQMQANAV  193 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTT---SSSEEEEE--TTTC-CEEEECCCHH-HH--TTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred             CCceEEEEeCCCeEEEEeCC---CCeEEEEE--CCCC-eEeeecCccc-cc--ccCCceeEEEEcCCCEEEEEECCCCEE
Confidence            34457888885556655433   35544554  3322 3333332210 00  00101223445444 778887778889


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCccc
Q 006979          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA  247 (623)
Q Consensus       168 ~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~  247 (623)
                      +++|++++ .....+...    ........|+|+|+++++.....        ..|+++|+.+++   ............
T Consensus       194 ~~~d~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~--------~~i~~~d~~~~~---~~~~~~~~~~~~  257 (433)
T 3bws_A          194 HVFDLKTL-AYKATVDLT----GKWSKILLYDPIRDLVYCSNWIS--------EDISVIDRKTKL---EIRKTDKIGLPR  257 (433)
T ss_dssp             EEEETTTC-CEEEEEECS----SSSEEEEEEETTTTEEEEEETTT--------TEEEEEETTTTE---EEEECCCCSEEE
T ss_pred             EEEECCCc-eEEEEEcCC----CCCeeEEEEcCCCCEEEEEecCC--------CcEEEEECCCCc---EEEEecCCCCce
Confidence            99999876 223334322    23455678999999887765322        569999998876   333333333455


Q ss_pred             ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeee
Q 006979          248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN  326 (623)
Q Consensus       248 ~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~  326 (623)
                      ...|+|||++|+........+......|+++|+.++.   ....+ ...    ..+..+.|+|||+ +++.... ++  .
T Consensus       258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~---~~~~~-~~~----~~~~~~~~~~~g~~l~~~~~~-~~--~  326 (433)
T 3bws_A          258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK---LIDTI-GPP----GNKRHIVSGNTENKIYVSDMC-CS--K  326 (433)
T ss_dssp             EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE---EEEEE-EEE----ECEEEEEECSSTTEEEEEETT-TT--E
T ss_pred             EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc---EEeec-cCC----CCcceEEECCCCCEEEEEecC-CC--E
Confidence            6789999999988775433221124579999998762   22222 111    2345789999998 5544333 33  6


Q ss_pred             EEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe------------EEEEEEeCCCCcee
Q 006979          327 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR------------SYLGILDDFGHSLS  394 (623)
Q Consensus       327 L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~------------~~L~~~d~~~~~~~  394 (623)
                      |..+|+.+++.....+.........|.            |+++.+++.....+.            ..|+++|+.+++..
T Consensus       327 v~v~d~~~~~~~~~~~~~~~~~~~~~s------------~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~  394 (433)
T 3bws_A          327 IEVYDLKEKKVQKSIPVFDKPNTIALS------------PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK  394 (433)
T ss_dssp             EEEEETTTTEEEEEEECSSSEEEEEEC------------TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred             EEEEECCCCcEEEEecCCCCCCeEEEc------------CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence            777888887755444332222222332            377777777654332            27899999887765


Q ss_pred             ecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 006979          395 LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (623)
Q Consensus       395 ~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~  432 (623)
                      ........+..+  +++++.+++.....   ..|+.++++
T Consensus       395 ~~~~~~~~~~~~~~s~dg~~l~~~~~~d---~~i~v~~~~  431 (433)
T 3bws_A          395 EFWEAGNQPTGLDVSPDNRYLVISDFLD---HQIRVYRRD  431 (433)
T ss_dssp             EEEECSSSEEEEEECTTSCEEEEEETTT---TEEEEEEET
T ss_pred             EEecCCCCCceEEEcCCCCEEEEEECCC---CeEEEEEec
Confidence            433333334444  66676665544311   355555543

>4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp}

Probab=99.40  E-value=4.3e-13  Score=139.35  Aligned_cols=151  Identities=17%  Similarity=0.074  Sum_probs=101.8

Q ss_pred             CcEEEEeecC-CCC--eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc-cCcC-----CHHhHHHH-cCceEEEE
Q 006979          460 LPELIEFPTE-VPG--QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGIL-----NLSIQYWT-SRGWAFVD  529 (623)
Q Consensus       460 ~~~~i~~~~~-~dg--~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~-~~~~-----~~~~~~~a-~~G~~v~~  529 (623)
                      +..+|.|.+. .+|  ..+.++++.|.+.      .++.|+|++.||...... .+.+     ...+..|+ ++||+|++
T Consensus        42 ~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~------~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~  115 (377)
T 4ezi_A           42 QLYKINYKTQSPDGNLTIASGLVAMPIHP------VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVM  115 (377)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEESSC------SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEE
T ss_pred             EEEEEEEEEECCCCCEEEEEEEEEECCCC------CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEE
Confidence            4567888776 134  4578999999872      367899999999863211 1111     13466788 99999999


Q ss_pred             ECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHH-hCCCCCCCceEEEEcChHHHHHHHHh-cC----CC-ceeEEE
Q 006979          530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV-GSGKADEKRLCITGGSAGGYTTLAAL-AF----RD-TFKAGA  602 (623)
Q Consensus       530 ~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~-~~~~~d~~rv~i~G~S~GG~~~~~~~-~~----~~-~f~a~v  602 (623)
                      +||||.|+.+........+.....++.|.+.++..+. ..+..+.+||+++|||+||+++++++ .+    |+ .+++++
T Consensus       116 ~D~rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~  195 (377)
T 4ezi_A          116 PDYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVA  195 (377)
T ss_dssp             ECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEE
T ss_pred             eCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEE
Confidence            9999988766411100001111223445444444443 34655789999999999999999888 43    33 689999


Q ss_pred             ecccCCCHHHhhhh
Q 006979          603 SLYGVSIPVIISEE  616 (623)
Q Consensus       603 ~~~g~~d~~~~~~~  616 (623)
                      +.+++.|+....+.
T Consensus       196 ~~~~p~dl~~~~~~  209 (377)
T 4ezi_A          196 PGSAPYGWEETMHF  209 (377)
T ss_dssp             EESCCCCHHHHHHH
T ss_pred             ecCcccCHHHHHHH
Confidence            99999999876543

>2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579}

Probab=99.39  E-value=4.8e-13  Score=133.47  Aligned_cols=153  Identities=13%  Similarity=0.011  Sum_probs=104.1

Q ss_pred             CCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHH-HHcCc---eEEEEEC
Q 006979          456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQY-WTSRG---WAFVDVN  531 (623)
Q Consensus       456 ~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~-~a~~G---~~v~~~d  531 (623)
                      ..++..+.+++.+...|..+..++|.|++  |++  ++++|+|+++||++.......+...... .+++|   ++|+.+|
T Consensus        13 ~~~~~~~~~~~~s~~~g~~~~~~v~~P~~--~~~--~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~   88 (275)
T 2qm0_A           13 IITSNTEQWKMYSKLEGKEYQIHISKPKQ--PAP--DSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVG   88 (275)
T ss_dssp             CCCTTEEEEEEECTTTCCEEEEEEECCSS--CCC--TTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEE
T ss_pred             eecCCceEEEEEecCCCCEEEEEEECCCC--CCC--CCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEEC
Confidence            45677888888875358899999999987  543  5789999999998531111111111122 23467   9999999


Q ss_pred             CCCCCCCchhHHHhhcc------------------C-CccchHHHHH--HHHHHHHhCCCCCCCceEEEEcChHHHHHHH
Q 006979          532 YGGSTGYGREFRERLLG------------------R-WGIVDVNDCC--SCATFLVGSGKADEKRLCITGGSAGGYTTLA  590 (623)
Q Consensus       532 ~rGs~~~g~~~~~~~~~------------------~-~g~~~~~D~~--~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~  590 (623)
                      ++++..++..-+.....                  . .+...+.|.+  ..+.++.++..+|++|++|+|+|+||++++.
T Consensus        89 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~  168 (275)
T 2qm0_A           89 YPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALH  168 (275)
T ss_dssp             CSCSSSCCHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHH
T ss_pred             CCCCCcCcccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHH
Confidence            99865543321111011                  0 1111333432  4455666665689999999999999999999


Q ss_pred             Hh-cCCCceeEEEecccCCCHHH
Q 006979          591 AL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       591 ~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                      ++ .+|+.|+++++.+|..++..
T Consensus       169 ~~~~~p~~f~~~~~~s~~~~~~~  191 (275)
T 2qm0_A          169 ILFTNLNAFQNYFISSPSIWWNN  191 (275)
T ss_dssp             HHHHCGGGCSEEEEESCCTTHHH
T ss_pred             HHHhCchhhceeEEeCceeeeCh
Confidence            98 88999999999999987643

>3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0

Probab=99.39  E-value=4.2e-13  Score=133.56  Aligned_cols=145  Identities=14%  Similarity=0.137  Sum_probs=99.0

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH---HhHHHHcCceEEEEECCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~---~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      ..+.+.+.+...|..+...+|.|++.  .   ++++|+||++||++....  .+..   ..+++.++||+|+.+|+||.|
T Consensus        14 ~~~~~~~~s~~~g~~~~~~v~~P~~~--~---~~~~p~vv~lHG~~~~~~--~~~~~~~~~~~~~~~g~~vv~~d~~g~G   86 (278)
T 3e4d_A           14 MQGVFSHQSETLKSEMTFAVYVPPKA--I---HEPCPVVWYLSGLTCTHA--NVMEKGEYRRMASELGLVVVCPDTSPRG   86 (278)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECGGG--G---TSCEEEEEEECCTTCCSH--HHHHHSCCHHHHHHHTCEEEECCSSCCS
T ss_pred             cEEEEEEeccccCCcceEEEEcCCCC--C---CCCCCEEEEEcCCCCCcc--chhhcccHHHHHhhCCeEEEecCCcccC
Confidence            34556665543688999999999762  1   467899999999854332  2222   345556679999999999865


Q ss_pred             CCchh----H---------HHhhccCC-ccchHHHH-H-HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCcee
Q 006979          537 GYGRE----F---------RERLLGRW-GIVDVNDC-C-SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFK  599 (623)
Q Consensus       537 ~~g~~----~---------~~~~~~~~-g~~~~~D~-~-~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~  599 (623)
                      .....    |         .......+ +.....+. . ++++++.++..+|++||+|+|+|+||++++.++ .+|++|+
T Consensus        87 ~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~  166 (278)
T 3e4d_A           87 NDVPDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFK  166 (278)
T ss_dssp             TTSCCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCS
T ss_pred             cccccccccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccc
Confidence            43211    1         10000001 11122232 2 466777766568889999999999999999998 8899999


Q ss_pred             EEEecccCCCHH
Q 006979          600 AGASLYGVSIPV  611 (623)
Q Consensus       600 a~v~~~g~~d~~  611 (623)
                      ++|+.+|+.++.
T Consensus       167 ~~v~~~~~~~~~  178 (278)
T 3e4d_A          167 SCSAFAPIVAPS  178 (278)
T ss_dssp             CEEEESCCSCGG
T ss_pred             eEEEeCCccccc
Confidence            999999998754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.38  E-value=1e-10  Score=120.20  Aligned_cols=265  Identities=10%  Similarity=0.083  Sum_probs=138.9

Q ss_pred             eEEEeCC-EEEEEeCC--CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          149 AFRIFGD-TVIFSNYK--DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       149 ~~~~s~d-~l~f~~~~--~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      ..++++| ++++....  ++.|++++++++  ..+++.... .........+|||||++|++.....        ..+.+
T Consensus        44 ~~a~spdg~l~~~~~~~~~~~v~~~~~~~g--~~~~~~~~~-~~~~~p~~~a~spdg~~l~~~~~~~--------~~v~v  112 (347)
T 3hfq_A           44 YLALSAKDCLYSVDKEDDEGGIAAWQIDGQ--TAHKLNTVV-APGTPPAYVAVDEARQLVYSANYHK--------GTAEV  112 (347)
T ss_dssp             CEEECTTCEEEEEEEETTEEEEEEEEEETT--EEEEEEEEE-EESCCCSEEEEETTTTEEEEEETTT--------TEEEE
T ss_pred             eEEEccCCeEEEEEecCCCceEEEEEecCC--cEEEeeeee-cCCCCCEEEEECCCCCEEEEEeCCC--------CEEEE
Confidence            4566655 56665542  467999999766  444444310 0012345678999999887765422        44666


Q ss_pred             EEcC-CCCcccceeccc-CC--------CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCC
Q 006979          226 IALN-GQNIQEPKVLVS-GS--------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF  295 (623)
Q Consensus       226 idl~-~g~~~~~~~l~~-~~--------~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~  295 (623)
                      ++++ ++....+..+.. +.        .......|||||+ |+.....       ...|++++++..+.+.........
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~-------~~~v~~~~~~~~g~~~~~~~~~~~  184 (347)
T 3hfq_A          113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG-------SDKVYVYNVSDAGQLSEQSVLTME  184 (347)
T ss_dssp             EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT-------TTEEEEEEECTTSCEEEEEEEECC
T ss_pred             EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC-------CCEEEEEEECCCCcEEEeeeEEcC
Confidence            6664 343111122211 11        1133468999999 6554322       336888898844432222111111


Q ss_pred             CCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEE
Q 006979          296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY  375 (623)
Q Consensus       296 ~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~  375 (623)
                      . .  ..+..+.|+|||+.+|+++...+.-.+|.++..+++.+.+...........-......+.+   +|+++.||++.
T Consensus       185 ~-g--~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~---spdG~~l~v~~  258 (347)
T 3hfq_A          185 A-G--FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL---SHDGHFLYVSN  258 (347)
T ss_dssp             T-T--CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE---CTTSCEEEEEE
T ss_pred             C-C--CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEE---CCCCCEEEEEe
Confidence            1 1  2345679999999444444425666677777656765544321100000000001122333   34888888877


Q ss_pred             EECCeEEEEEEeCCCCceeec---ccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979          376 RQNGRSYLGILDDFGHSLSLL---DIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       376 ~~~g~~~L~~~d~~~~~~~~l---t~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                      ..++.-.+|.++.+ +..+.+   .........+  +++++.+++... ....-.+|.++.++++++.+.
T Consensus       259 ~~~~~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~~~d~~tg~l~~~~  326 (347)
T 3hfq_A          259 RGYNTLAVFAVTAD-GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ-NTDNATLYARDLTSGKLSLLQ  326 (347)
T ss_dssp             ETTTEEEEEEECGG-GCEEEEEEEECSSSCCCEEEECTTSSEEEEEET-TTTEEEEEEECTTTCCEEEEE
T ss_pred             CCCCEEEEEEECCC-CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc-CCCcEEEEEEeCCCCeEEecc
Confidence            66666666666533 344333   2211122233  777777766543 333345777787888765543

>3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822}

Probab=99.38  E-value=2.2e-12  Score=130.54  Aligned_cols=139  Identities=15%  Similarity=0.075  Sum_probs=97.8

Q ss_pred             EEEee---cCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-CHHhHHHHcCceEEEEECCCCCCCC
Q 006979          463 LIEFP---TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGSTGY  538 (623)
Q Consensus       463 ~i~~~---~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-~~~~~~~a~~G~~v~~~d~rGs~~~  538 (623)
                      .+.|.   .. +|..+.+++|.|.+.      .++.|+||++||++...  ..+ ....+.++++||.|+.+|+|+.+..
T Consensus        26 ~~~~~~~~~~-~~~~l~~~~~~P~~~------~~~~p~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~v~~~d~~~~~~p   96 (304)
T 3d0k_A           26 AIPYLDDDRN-ADRPFTLNTYRPYGY------TPDRPVVVVQHGVLRNG--ADYRDFWIPAADRHKLLIVAPTFSDEIWP   96 (304)
T ss_dssp             EEEECC---C-TTCCEEEEEEECTTC------CTTSCEEEEECCTTCCH--HHHHHHTHHHHHHHTCEEEEEECCTTTSC
T ss_pred             eEEecccCCC-CCceEEEEEEeCCCC------CCCCcEEEEeCCCCCCH--HHHHHHHHHHHHHCCcEEEEeCCccccCC
Confidence            45565   44 788899999999762      24579999999995443  233 4557788899999999999964211


Q ss_pred             chhHHH-------h-hccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC-ceeEEEecc-cC
Q 006979          539 GREFRE-------R-LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD-TFKAGASLY-GV  607 (623)
Q Consensus       539 g~~~~~-------~-~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~-~f~a~v~~~-g~  607 (623)
                      +..+..       . .........++|+.++++++.++..+|++||+|+|||+||++++.++ .+|+ .++++|... |.
T Consensus        97 ~~~~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~  176 (304)
T 3d0k_A           97 GVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGW  176 (304)
T ss_dssp             HHHHTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSS
T ss_pred             CccccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCcc
Confidence            000000       0 00012234467899999999998778999999999999999999998 7884 778777444 66


Q ss_pred             CCH
Q 006979          608 SIP  610 (623)
Q Consensus       608 ~d~  610 (623)
                      .++
T Consensus       177 ~~~  179 (304)
T 3d0k_A          177 YTL  179 (304)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.38  E-value=2e-11  Score=123.03  Aligned_cols=253  Identities=8%  Similarity=0.030  Sum_probs=145.7

Q ss_pred             HHHHhccCCcc-CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EE
Q 006979           81 ADVVSGASKRL-GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TV  157 (623)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l  157 (623)
                      ++.+.+....+ +++.|+| ++.+||++...   +  .|++++..++ +. .....+         .....++++++ .+
T Consensus         4 ~~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~---~--~i~~~d~~~~-~~-~~~~~~---------~~~~~i~~~~dG~l   67 (297)
T 3g4e_A            4 IECVLPENCRCGESPVWEEVSNSLLFVDIPA---K--KVCRWDSFTK-QV-QRVTMD---------APVSSVALRQSGGY   67 (297)
T ss_dssp             EEEEECCCCSBEEEEEEETTTTEEEEEETTT---T--EEEEEETTTC-CE-EEEECS---------SCEEEEEEBTTSSE
T ss_pred             EEEEeccCCccccCCeEECCCCEEEEEECCC---C--EEEEEECCCC-cE-EEEeCC---------CceEEEEECCCCCE
Confidence            34455555555 7899999 89999999663   3  3777776632 22 211111         01334556555 45


Q ss_pred             EEEeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCC--CCCCceeEEEEEEcCCCCcc
Q 006979          158 IFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQ--DALNSTTEIVAIALNGQNIQ  234 (623)
Q Consensus       158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~--~~~~~~~~L~~idl~~g~~~  234 (623)
                      ++..  .+.|+++|++++  ..+.+... .+.+..+.++..++|+|+.++..+.....  ........||+++.++ +  
T Consensus        68 ~v~~--~~~l~~~d~~~g--~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~--  140 (297)
T 3g4e_A           68 VATI--GTKFCALNWKEQ--SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-H--  140 (297)
T ss_dssp             EEEE--TTEEEEEETTTT--EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-C--
T ss_pred             EEEE--CCeEEEEECCCC--cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-C--
Confidence            5543  456999999876  55554432 12234678899999999855544332211  0011347899999864 3  


Q ss_pred             cceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec-CCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       235 ~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                       ...+..+....+...|||||++|++....       ...|++++++ ..+.+...+++.... .....+....+++||.
T Consensus       141 -~~~~~~~~~~pngi~~spdg~~lyv~~~~-------~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          141 -VKKYFDQVDISNGLDWSLDHKIFYYIDSL-------SYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             -EEEEEEEESBEEEEEECTTSCEEEEEEGG-------GTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSC
T ss_pred             -EEEEeeccccccceEEcCCCCEEEEecCC-------CCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCC
Confidence             44444444455678899999999887633       3469999985 333333334433221 0013456778899996


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeEEEEeecc-cccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                      +++ +..  +...|+++|+++++........ ....         ...|-  .++++.||+++.+.+
T Consensus       212 lwv-a~~--~~~~v~~~d~~tG~~~~~i~~p~~~~t---------~~~f~--g~d~~~L~vt~~~~~  264 (297)
T 3g4e_A          212 LWV-ACY--NGGRVIRLDPVTGKRLQTVKLPVDKTT---------SCCFG--GKNYSEMYVTCARDG  264 (297)
T ss_dssp             EEE-EEE--TTTEEEEECTTTCCEEEEEECSSSBEE---------EEEEE--SGGGCEEEEEEBCTT
T ss_pred             EEE-EEc--CCCEEEEEcCCCceEEEEEECCCCCce---------EEEEe--CCCCCEEEEEcCCcC
Confidence            554 443  2246999999877654333221 1111         12222  026678888876544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.37  E-value=8.3e-11  Score=122.72  Aligned_cols=232  Identities=12%  Similarity=0.075  Sum_probs=146.2

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++++...++.|+++|+.++ .....+..     ........|+|||++|++.....        ..|+++|+.+++   
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~-~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~d--------~~i~v~d~~~~~---   65 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN-KVTATIPV-----GSNPMGAVISPDGTKVYVANAHS--------NDVSIIDTATNN---   65 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT-EEEEEEEC-----SSSEEEEEECTTSSEEEEEEGGG--------TEEEEEETTTTE---
T ss_pred             EEEEEcCCCCEEEEEECCCC-eEEEEeec-----CCCcceEEECCCCCEEEEECCCC--------CeEEEEECCCCe---
Confidence            46667777888999999876 22233332     22346788999999887765432        579999998887   


Q ss_pred             ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~  315 (623)
                      ..............+|||||++|++...+       ...|+++|+.++.   ....+.. .    ..+..+.|+|||+.+
T Consensus        66 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~-------~~~v~v~d~~~~~---~~~~~~~-~----~~~~~~~~s~dg~~l  130 (391)
T 1l0q_A           66 VIATVPAGSSPQGVAVSPDGKQVYVTNMA-------SSTLSVIDTTSNT---VAGTVKT-G----KSPLGLALSPDGKKL  130 (391)
T ss_dssp             EEEEEECSSSEEEEEECTTSSEEEEEETT-------TTEEEEEETTTTE---EEEEEEC-S----SSEEEEEECTTSSEE
T ss_pred             EEEEEECCCCccceEECCCCCEEEEEECC-------CCEEEEEECCCCe---EEEEEeC-C----CCcceEEECCCCCEE
Confidence            33333333355668899999999877533       2359999998762   2233332 2    345688999999944


Q ss_pred             EEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceee
Q 006979          316 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL  395 (623)
Q Consensus       316 ~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~  395 (623)
                      +++..  +...|+.+|+.+++.............         +.+.   ++++.++++...++  .|+++|+.+++...
T Consensus       131 ~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~---------~~~~---~dg~~l~~~~~~~~--~v~~~d~~~~~~~~  194 (391)
T 1l0q_A          131 YVTNN--GDKTVSVINTVTKAVINTVSVGRSPKG---------IAVT---PDGTKVYVANFDSM--SISVIDTVTNSVID  194 (391)
T ss_dssp             EEEET--TTTEEEEEETTTTEEEEEEECCSSEEE---------EEEC---TTSSEEEEEETTTT--EEEEEETTTTEEEE
T ss_pred             EEEeC--CCCEEEEEECCCCcEEEEEecCCCcce---------EEEC---CCCCEEEEEeCCCC--EEEEEECCCCeEEE
Confidence            33333  233688889888876555433222222         2232   37788877764444  47778988776654


Q ss_pred             cccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          396 LDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       396 lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      .......+..+  +++++.+++.... .....|+++++.+++.
T Consensus       195 ~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~v~~~d~~~~~~  236 (391)
T 1l0q_A          195 TVKVEAAPSGIAVNPEGTKAYVTNVD-KYFNTVSMIDTGTNKI  236 (391)
T ss_dssp             EEECSSEEEEEEECTTSSEEEEEEEC-SSCCEEEEEETTTTEE
T ss_pred             EEecCCCccceEECCCCCEEEEEecC-cCCCcEEEEECCCCeE
Confidence            33333334444  6677777666542 2346799999887753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.37  E-value=2.3e-10  Score=116.39  Aligned_cols=239  Identities=11%  Similarity=-0.010  Sum_probs=139.1

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCc-eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~-~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~  232 (623)
                      .+.++++...++.|+++|+.++  +. ..+..+    .... .+.|+|||++++++....        ..|+++|+++++
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~----~~~~-~~~~s~dg~~l~~~~~~~--------~~i~~~d~~~~~   73 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTL--EILNQITLG----YDFV-DTAITSDCSNVVVTSDFC--------QTLVQIETQLEP   73 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTC--CEEEEEECC----CCEE-EEEECSSSCEEEEEESTT--------CEEEEEECSSSS
T ss_pred             CCEEEEEecCCCeEEEEeCccc--ceeeeEEcc----CCcc-eEEEcCCCCEEEEEeCCC--------CeEEEEECCCCc
Confidence            3467777777788999999887  44 333322    1223 688999999887765532        579999999887


Q ss_pred             cccc-eecccCCCcccc-eeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979          233 IQEP-KVLVSGSDFYAF-PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (623)
Q Consensus       233 ~~~~-~~l~~~~~~~~~-p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~  310 (623)
                         . ............ ..|||||++|+ +. ...+   ....|+++|++++.   ....+...     .....+.|+|
T Consensus        74 ---~~~~~~~~~~~~~~~~~~s~dg~~l~-~~-~~~~---~~~~i~v~d~~~~~---~~~~~~~~-----~~~~~~~~sp  137 (331)
T 3u4y_A           74 ---PKVVAIQEGQSSMADVDITPDDQFAV-TV-TGLN---HPFNMQSYSFLKNK---FISTIPIP-----YDAVGIAISP  137 (331)
T ss_dssp             ---CEEEEEEECSSCCCCEEECTTSSEEE-EC-CCSS---SSCEEEEEETTTTE---EEEEEECC-----TTEEEEEECT
T ss_pred             ---eeEEecccCCCCccceEECCCCCEEE-Ee-cCCC---CcccEEEEECCCCC---eEEEEECC-----CCccceEECC
Confidence               3 322222223344 88999999988 43 2210   12279999998763   22233322     2346889999


Q ss_pred             CCc-EEEEEeCCCCe-eeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          311 KGE-LFFVTDRKNGF-WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       311 DG~-l~~~~~~~~g~-~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      ||+ +|+.... .+. -.+|.++.. +............+.     ....+.+.   |+++.+|++...++  .|+++|+
T Consensus       138 dg~~l~~~~~~-~~~~i~~~~~~~~-g~~~~~~~~~~~~~~-----~~~~~~~s---pdg~~l~v~~~~~~--~v~v~d~  205 (331)
T 3u4y_A          138 NGNGLILIDRS-SANTVRRFKIDAD-GVLFDTGQEFISGGT-----RPFNITFT---PDGNFAFVANLIGN--SIGILET  205 (331)
T ss_dssp             TSSCEEEEEET-TTTEEEEEEECTT-CCEEEEEEEEECSSS-----SEEEEEEC---TTSSEEEEEETTTT--EEEEEEC
T ss_pred             CCCEEEEEecC-CCceEEEEEECCC-CcEeecCCccccCCC-----CccceEEC---CCCCEEEEEeCCCC--eEEEEEC
Confidence            999 5554443 344 455555532 222111100000000     11223333   48888887764444  5777788


Q ss_pred             CCCce----eecccCCcceEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          389 FGHSL----SLLDIPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       389 ~~~~~----~~lt~~~~~v~~--~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      ++++.    ..+..+. ....  ++++++.+++...   ....|+++++++++.+.+
T Consensus       206 ~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~---~~~~i~~~d~~~~~~~~~  258 (331)
T 3u4y_A          206 QNPENITLLNAVGTNN-LPGTIVVSRDGSTVYVLTE---STVDVFNFNQLSGTLSFV  258 (331)
T ss_dssp             SSTTSCEEEEEEECSS-CCCCEEECTTSSEEEEECS---SEEEEEEEETTTTEEEEE
T ss_pred             CCCcccceeeeccCCC-CCceEEECCCCCEEEEEEc---CCCEEEEEECCCCceeee
Confidence            77664    3444332 2222  3778887776543   234589999998876544

>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A

Probab=99.37  E-value=8.4e-13  Score=139.03  Aligned_cols=151  Identities=18%  Similarity=0.127  Sum_probs=103.0

Q ss_pred             CcEEEEeecC-CCC--eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc---------CcCCHHhHHHHcCceEE
Q 006979          460 LPELIEFPTE-VPG--QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---------GILNLSIQYWTSRGWAF  527 (623)
Q Consensus       460 ~~~~i~~~~~-~dg--~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~---------~~~~~~~~~~a~~G~~v  527 (623)
                      ...++.|.+. .+|  ..+.++++.|.+.  .  ..++.|+||++||++.....         ..+...++.|+++||.|
T Consensus        45 ~~~~i~y~t~~~~g~~~~~~g~l~~P~~~--~--~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V  120 (397)
T 3h2g_A           45 RVAEFTYATIGVEGEPATASGVLLIPGGE--R--CSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVV  120 (397)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEEECT--T--CCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEE
T ss_pred             EEEEEEEEecCCCCCeEEEEEEEEeCCCC--C--CCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEE
Confidence            4456677654 123  4588999999763  1  14678999999998654332         23667888999999999


Q ss_pred             EEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC-CCCCCCceEEEEcChHHHHHHHHh-cC-C-----Ccee
Q 006979          528 VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAAL-AF-R-----DTFK  599 (623)
Q Consensus       528 ~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~-~-----~~f~  599 (623)
                      +++||||.|+.+..............++.|...++..+.++ +..|++||+++|||+||++++.++ .. +     -.+.
T Consensus       121 ~~~D~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~  200 (397)
T 3h2g_A          121 VGSDYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLV  200 (397)
T ss_dssp             EEECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEE
T ss_pred             EEecCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceE
Confidence            99999998765421110000000013455666666665544 666788999999999999998776 22 2     2689


Q ss_pred             EEEecccCCCHHHhh
Q 006979          600 AGASLYGVSIPVIIS  614 (623)
Q Consensus       600 a~v~~~g~~d~~~~~  614 (623)
                      +++..+++.|+....
T Consensus       201 ~~~~~~~~~~l~~~~  215 (397)
T 3h2g_A          201 ASAPISGPYALEQTF  215 (397)
T ss_dssp             EEEEESCCSSHHHHH
T ss_pred             EEecccccccHHHHH
Confidence            999999999997553

>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A*

Probab=99.37  E-value=2.9e-12  Score=127.85  Aligned_cols=130  Identities=15%  Similarity=0.121  Sum_probs=101.4

Q ss_pred             EeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHH
Q 006979          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE  544 (623)
Q Consensus       465 ~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~  544 (623)
                      .+... +|..++++++.|.+        ++.|+||++||.+.  ....|...++.|+++||.|+.+|+||.|......  
T Consensus        21 ~~~~~-~g~~l~~~~~~~~~--------~~~~~vv~~hG~~~--~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~--   87 (303)
T 3pe6_A           21 HLVNA-DGQYLFCRYWAPTG--------TPKALIFVSHGAGE--HSGRYEELARMLMGLDLLVFAHDHVGHGQSEGER--   87 (303)
T ss_dssp             EEECT-TSCEEEEEEECCSS--------CCSEEEEEECCTTC--CGGGGHHHHHHHHHTTEEEEEECCTTSTTSCSST--
T ss_pred             eEecC-CCeEEEEEEeccCC--------CCCeEEEEECCCCc--hhhHHHHHHHHHHhCCCcEEEeCCCCCCCCCCCC--
Confidence            45566 89999999998864        44689999999843  3346778899999999999999999976654321  


Q ss_pred             hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       545 ~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                       .....-...++|+.++++++..+  .+.++|.++|||+||++++.++ .+|++++++|..+|..+.
T Consensus        88 -~~~~~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~  151 (303)
T 3pe6_A           88 -MVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLA  151 (303)
T ss_dssp             -TCCSSTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSB
T ss_pred             -CCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccC
Confidence             11111123478999999998876  3457999999999999999999 889999999999998765

>1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3

Probab=99.35  E-value=4.4e-12  Score=126.78  Aligned_cols=138  Identities=14%  Similarity=0.176  Sum_probs=93.4

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC---HHhHHHHcCceEEEEECCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGS  535 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~---~~~~~~a~~G~~v~~~d~rGs  535 (623)
                      ...+.+++.+...|.++..+ |.|.+          .|+||++||++.......|.   ...++++++||+|+.+|++++
T Consensus         9 ~~~~~~~~~S~~~~~~~~~~-~~P~~----------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~   77 (280)
T 1r88_A            9 APYENLMVPSPSMGRDIPVA-FLAGG----------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAY   77 (280)
T ss_dssp             CCCEEEEEEETTTTEEEEEE-EECCS----------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTT
T ss_pred             CCEEEEEEECcccCCcceEE-EeCCC----------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCC
Confidence            46678888875367888888 67743          38999999995322222222   245678889999999999876


Q ss_pred             CCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       536 ~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      +.|.. +.....+.+.....+   +++.++.++-.+|++|++|+|+||||++++.++ ++|++|+++|+.+|..++.
T Consensus        78 ~~~~~-~~~~~~~~~~~~~~~---~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~  150 (280)
T 1r88_A           78 SMYTN-WEQDGSKQWDTFLSA---ELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPS  150 (280)
T ss_dssp             STTSB-CSSCTTCBHHHHHHT---HHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTT
T ss_pred             CccCC-CCCCCCCcHHHHHHH---HHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcC
Confidence            54421 100000111111112   344455543347889999999999999999988 8999999999999998764

>2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae}

Probab=99.34  E-value=2.5e-12  Score=126.67  Aligned_cols=146  Identities=14%  Similarity=0.058  Sum_probs=95.1

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH--HhHH-HHcCceEEEEECCCCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQY-WTSRGWAFVDVNYGGSTG  537 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~--~~~~-~a~~G~~v~~~d~rGs~~  537 (623)
                      .+.+++.+...|..+.+++|.|++.+.+..++++.|+||++||++...  ..+..  .... +.++||+|+.+|+++++.
T Consensus         7 ~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   84 (263)
T 2uz0_A            7 VMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNH--NSWLKRTNVERLLRGTNLIVVMPNTSNGWY   84 (263)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCT--THHHHHSCHHHHTTTCCCEEEECCCTTSTT
T ss_pred             EeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCH--HHHHhccCHHHHHhcCCeEEEEECCCCCcc
Confidence            355666654367889999999987210111246789999999985332  23332  2333 445899999999998653


Q ss_pred             CchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCHHH
Q 006979          538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       538 ~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~~~  612 (623)
                      .....    ...+-....+|+...++++..+..+|++||+|+|+|+||++++.++.+|++|+++|+.+|..++..
T Consensus        85 ~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~v~~~~~~~~~~  155 (263)
T 2uz0_A           85 TDTQY----GFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLALTTNRFSHAASFSGALSFQN  155 (263)
T ss_dssp             SBCTT----SCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHHHHCCCSEEEEESCCCCSSS
T ss_pred             ccCCC----cccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHhCccccceEEEecCCcchhh
Confidence            22110    001111123456666666554345788999999999999999986668889999999999987654

>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13

Probab=99.34  E-value=7e-12  Score=126.96  Aligned_cols=136  Identities=11%  Similarity=0.104  Sum_probs=98.4

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCC-CCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-TGY  538 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs-~~~  538 (623)
                      .++...+... +|..++++.+.|....     .+..|.||++||.+  .....|...+..|+++||.|+.+|+||. |.+
T Consensus         6 ~~~~~~i~~~-dG~~l~~~~~~p~~~~-----~~~~~~VvllHG~g--~~~~~~~~~~~~L~~~G~~Vi~~D~rGh~G~S   77 (305)
T 1tht_A            6 KTIAHVLRVN-NGQELHVWETPPKENV-----PFKNNTILIASGFA--RRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLS   77 (305)
T ss_dssp             SCEEEEEEET-TTEEEEEEEECCCTTS-----CCCSCEEEEECTTC--GGGGGGHHHHHHHHTTTCCEEEECCCBCC---
T ss_pred             cceEEEEEcC-CCCEEEEEEecCcccC-----CCCCCEEEEecCCc--cCchHHHHHHHHHHHCCCEEEEeeCCCCCCCC
Confidence            3455667776 8999999998876410     23458899999984  3344677889999999999999999996 443


Q ss_pred             chhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCHHH
Q 006979          539 GREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       539 g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~~~  612 (623)
                      ...     ...+.. ...+|+.++++++.+.+   .+++.++||||||++++.++..| .++++|...|..++..
T Consensus        78 ~~~-----~~~~~~~~~~~D~~~~~~~l~~~~---~~~~~lvGhSmGG~iA~~~A~~~-~v~~lvl~~~~~~~~~  143 (305)
T 1tht_A           78 SGS-----IDEFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISDL-ELSFLITAVGVVNLRD  143 (305)
T ss_dssp             ----------CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTTS-CCSEEEEESCCSCHHH
T ss_pred             CCc-----ccceehHHHHHHHHHHHHHHHhCC---CCceEEEEECHHHHHHHHHhCcc-CcCEEEEecCchhHHH
Confidence            221     112222 23578889999998543   47999999999999999999557 7899999888877643

>3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0

Probab=99.34  E-value=1.4e-12  Score=130.00  Aligned_cols=147  Identities=12%  Similarity=0.082  Sum_probs=96.0

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECCCCCC--
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGST--  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~rGs~--  536 (623)
                      ..+.+.+.+...|..+.+++|.|++  +++  ++++|+||++||++...... ......+.++++||+|+.+|.++.|  
T Consensus        14 ~~~~~~~~s~~~g~~~~~~v~~P~~--~~~--~~~~P~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~   89 (280)
T 3ls2_A           14 WHKQYTHSAVSTHCTMRFAVFLPPG--ASE--SNKVPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTSPRGDN   89 (280)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECTT--CBT--TBCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTT
T ss_pred             eEEEEEEechhcCCceEEEEEcCCC--CCC--CCCcCEEEEeCCCCCChhhhhcchhHHHHHhhCCeEEEEeCCcccccc
Confidence            3455666664368899999999987  433  67899999999985433211 1112456677889999999976432  


Q ss_pred             ---------CCchhHH-HhhccCC-ccch-HHHHH-HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEE
Q 006979          537 ---------GYGREFR-ERLLGRW-GIVD-VNDCC-SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGA  602 (623)
Q Consensus       537 ---------~~g~~~~-~~~~~~~-g~~~-~~D~~-~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v  602 (623)
                               |.|..+. ......+ +... .+++. +++.++.+...+ ++|++|+|+|+||++++.++ .+|++|++++
T Consensus        90 ~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~  168 (280)
T 3ls2_A           90 VPNEDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPV-TSTKAISGHSMGGHGALMIALKNPQDYVSAS  168 (280)
T ss_dssp             SCCCSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEBTHHHHHHHHHHHHSTTTCSCEE
T ss_pred             cccccccccccCCccccccccccccccccHHHHHHHHHHHHHHhhCCC-CCCeEEEEECHHHHHHHHHHHhCchhheEEE
Confidence                     1122211 1111111 1111 22222 344555544333 58999999999999999998 8999999999


Q ss_pred             ecccCCCHH
Q 006979          603 SLYGVSIPV  611 (623)
Q Consensus       603 ~~~g~~d~~  611 (623)
                      +.+|+.++.
T Consensus       169 ~~s~~~~~~  177 (280)
T 3ls2_A          169 AFSPIVNPI  177 (280)
T ss_dssp             EESCCSCGG
T ss_pred             EecCccCcc
Confidence            999998764

>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A

Probab=99.34  E-value=1.6e-12  Score=129.53  Aligned_cols=147  Identities=14%  Similarity=0.118  Sum_probs=97.1

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECCCCCCC-
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGSTG-  537 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~rGs~~-  537 (623)
                      ..+.+.+.+...|..+.+++|.|++  ++.  ++++|+||++||++...... ......+.++++||+|+.+|.++.+. 
T Consensus        16 ~~~~~~~~s~~~g~~~~~~v~~P~~--~~~--~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~   91 (280)
T 3i6y_A           16 WHKQYSHVSNTLNCAMRFAIYLPPQ--AST--GAKVPVLYWLSGLTCSDENFMQKAGAQRLAAELGIAIVAPDTSPRGEG   91 (280)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECGG--GGT--TCCEEEEEEECCTTCCSSHHHHHSCCHHHHHHHTCEEEEECSSCCSTT
T ss_pred             cEEEEEEeccccCCeeEEEEEeCCC--CCC--CCCccEEEEecCCCCChhHHhhcccHHHHHhhCCeEEEEeCCcccccc
Confidence            4456667664378899999999987  332  67899999999985433211 11114566778899999999875332 


Q ss_pred             ----------CchhH-HHhhccCCcc-ch-HHHH-HHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEE
Q 006979          538 ----------YGREF-RERLLGRWGI-VD-VNDC-CSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGA  602 (623)
Q Consensus       538 ----------~g~~~-~~~~~~~~g~-~~-~~D~-~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v  602 (623)
                                .|..+ .......+.. .. .+.+ .++++++.++..+ ++||+|+|+|+||++++.++ .+|++|+++|
T Consensus        92 ~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v  170 (280)
T 3i6y_A           92 VADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVS  170 (280)
T ss_dssp             CCCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEE
T ss_pred             cCcccccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEE
Confidence                      11111 1111111110 11 2222 2455566554334 68999999999999999998 8899999999


Q ss_pred             ecccCCCHH
Q 006979          603 SLYGVSIPV  611 (623)
Q Consensus       603 ~~~g~~d~~  611 (623)
                      +.+|+.++.
T Consensus       171 ~~s~~~~~~  179 (280)
T 3i6y_A          171 AFSPINNPV  179 (280)
T ss_dssp             EESCCCCGG
T ss_pred             EeCCccccc
Confidence            999998764

>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans}

Probab=99.34  E-value=8.1e-12  Score=131.84  Aligned_cols=134  Identities=17%  Similarity=0.120  Sum_probs=101.7

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH-HhHHHHcCceEEEEECCCCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVNYGGSTGY  538 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~-~~~~~a~~G~~v~~~d~rGs~~~  538 (623)
                      ..+.+.++.  +|..++++++.+.        +++.|+||++||.+.  ....+.. ....+.++||.|+.+|+||.|..
T Consensus       134 ~~~~~~i~~--~~~~l~~~~~~~~--------~~~~p~vv~~HG~~~--~~~~~~~~~~~~~~~~g~~vi~~D~~G~G~s  201 (405)
T 3fnb_A          134 PLKSIEVPF--EGELLPGYAIISE--------DKAQDTLIVVGGGDT--SREDLFYMLGYSGWEHDYNVLMVDLPGQGKN  201 (405)
T ss_dssp             CCEEEEEEE--TTEEEEEEEECCS--------SSCCCEEEEECCSSC--CHHHHHHHTHHHHHHTTCEEEEECCTTSTTG
T ss_pred             CcEEEEEeE--CCeEEEEEEEcCC--------CCCCCEEEEECCCCC--CHHHHHHHHHHHHHhCCcEEEEEcCCCCcCC
Confidence            567788887  5889999988542        344599999999843  2223322 23356689999999999997654


Q ss_pred             chhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhh
Q 006979          539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISE  615 (623)
Q Consensus       539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~  615 (623)
                      ...     .........+|+.+++++|..++    ++|+|+|+|+||++++.++ .+| +++++|+.+|+.|+.....
T Consensus       202 ~~~-----~~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~  269 (405)
T 3fnb_A          202 PNQ-----GLHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFR  269 (405)
T ss_dssp             GGG-----TCCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHH
T ss_pred             CCC-----CCCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHH
Confidence            221     12233455889999999998775    7999999999999999999 677 8999999999999876543

>3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A

Probab=99.34  E-value=1.8e-12  Score=132.33  Aligned_cols=108  Identities=17%  Similarity=0.151  Sum_probs=83.9

Q ss_pred             CCCCCEEEEecCCCCCc-ccCcCCHHhHHHHcC-ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCC
Q 006979          492 EEKPPLLVKSHGGPTSE-ARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG  569 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~-~~~~~~~~~~~~a~~-G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~  569 (623)
                      +..+|+||++|||++.. ....+...+..|+.+ ||.|+.+|||+.++..           ....++|+.++++|+.++ 
T Consensus        77 ~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~-----------~~~~~~d~~~a~~~l~~~-  144 (322)
T 3k6k_A           77 GAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENP-----------FPAAVDDCVAAYRALLKT-  144 (322)
T ss_dssp             TCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHHH-
T ss_pred             CCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCC-----------CchHHHHHHHHHHHHHHc-
Confidence            34456699999985322 223445566777764 9999999999876532           123478999999999988 


Q ss_pred             CCCCCceEEEEcChHHHHHHHHh-cCCCc----eeEEEecccCCCHH
Q 006979          570 KADEKRLCITGGSAGGYTTLAAL-AFRDT----FKAGASLYGVSIPV  611 (623)
Q Consensus       570 ~~d~~rv~i~G~S~GG~~~~~~~-~~~~~----f~a~v~~~g~~d~~  611 (623)
                      .+|++||+|+|+|+||++++.++ .+++.    ++++|+++|+.|+.
T Consensus       145 ~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~  191 (322)
T 3k6k_A          145 AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLT  191 (322)
T ss_dssp             HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTT
T ss_pred             CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcc
Confidence            47899999999999999999888 55544    89999999998864

>3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A*

Probab=99.34  E-value=1.5e-12  Score=136.46  Aligned_cols=115  Identities=21%  Similarity=0.306  Sum_probs=85.3

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh--------------H-------HH---hhc
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE--------------F-------RE---RLL  547 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~--------------~-------~~---~~~  547 (623)
                      +++.|+||++||++.  ....+...++.|+++||+|+++|+||.+.....              |       ..   ...
T Consensus        95 ~~~~P~Vv~~HG~~~--~~~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  172 (383)
T 3d59_A           95 GEKYPLVVFSHGLGA--FRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTLKQEEETHIR  172 (383)
T ss_dssp             SSCEEEEEEECCTTC--CTTTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred             CCCCCEEEEcCCCCC--CchHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCceeeeccccCcccchhhh
Confidence            567899999999843  344677889999999999999999997653210              0       00   000


Q ss_pred             cCCccchHHHHHHHHHHHHh--------------------CCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccC
Q 006979          548 GRWGIVDVNDCCSCATFLVG--------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGV  607 (623)
Q Consensus       548 ~~~g~~~~~D~~~~~~~l~~--------------------~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~  607 (623)
                      ...-....+|+.+++++|.+                    ++.+|++||+++|||+||++++.++.++.+|+|+|+.+|.
T Consensus       173 ~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~v~a~v~~~~~  252 (383)
T 3d59_A          173 NEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQRFRCGIALDAW  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHHhhCCCccEEEEeCCc
Confidence            00001125789999999875                    5668899999999999999999998555579999999885


Q ss_pred             C
Q 006979          608 S  608 (623)
Q Consensus       608 ~  608 (623)
                      .
T Consensus       253 ~  253 (383)
T 3d59_A          253 M  253 (383)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32

Probab=99.34  E-value=7e-12  Score=124.49  Aligned_cols=110  Identities=18%  Similarity=0.118  Sum_probs=87.9

Q ss_pred             CCCCCEEEEecCCCCCc---ccCcCCHHhHHH----HcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHH
Q 006979          492 EEKPPLLVKSHGGPTSE---ARGILNLSIQYW----TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF  564 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~---~~~~~~~~~~~~----a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~  564 (623)
                      +++.|+||++|||++..   ....|...++.|    +++||.|+.+|||+++....           ...++|+.+++++
T Consensus        38 ~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~~~-----------~~~~~d~~~~~~~  106 (273)
T 1vkh_A           38 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEITN-----------PRNLYDAVSNITR  106 (273)
T ss_dssp             TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSCT-----------THHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCCCC-----------CcHHHHHHHHHHH
Confidence            45679999999986432   333566677777    68999999999998654211           1347899999999


Q ss_pred             HHhCCCCCCCceEEEEcChHHHHHHHHh-cC-----------------CCceeEEEecccCCCHHHhh
Q 006979          565 LVGSGKADEKRLCITGGSAGGYTTLAAL-AF-----------------RDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       565 l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~-----------------~~~f~a~v~~~g~~d~~~~~  614 (623)
                      +.++  ++.+||+|+|+|+||++++.++ .+                 ++.++++|..+|+.++....
T Consensus       107 l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~  172 (273)
T 1vkh_A          107 LVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELL  172 (273)
T ss_dssp             HHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHH
T ss_pred             HHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhh
Confidence            9887  5778999999999999999998 54                 78999999999999886553

>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba}

Probab=99.33  E-value=2.4e-12  Score=130.46  Aligned_cols=116  Identities=17%  Similarity=0.208  Sum_probs=92.4

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|.. .+.+|.|..       ..+.|+||++||++.  ....+...++.|+++||.|+.+|+||.+.....         
T Consensus        80 ~g~~-~~~~~~p~~-------~~~~p~vv~~HG~~~--~~~~~~~~~~~la~~G~~vv~~d~~g~g~s~~~---------  140 (306)
T 3vis_A           80 DGFG-GGTIYYPRE-------NNTYGAIAISPGYTG--TQSSIAWLGERIASHGFVVIAIDTNTTLDQPDS---------  140 (306)
T ss_dssp             SSSC-CEEEEEESS-------CSCEEEEEEECCTTC--CHHHHHHHHHHHHTTTEEEEEECCSSTTCCHHH---------
T ss_pred             CCCc-ceEEEeeCC-------CCCCCEEEEeCCCcC--CHHHHHHHHHHHHhCCCEEEEecCCCCCCCcch---------
Confidence            4443 245666765       346799999999843  333566788899999999999999996654322         


Q ss_pred             ccchHHHHHHHHHHHHhC------CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          551 GIVDVNDCCSCATFLVGS------GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~------~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                         ..+|+.++++|+.++      ..+|++||+|+|+|+||++++.++ .+|+ ++++|+++|..+
T Consensus       141 ---~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~  202 (306)
T 3vis_A          141 ---RARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL  202 (306)
T ss_dssp             ---HHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS
T ss_pred             ---HHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC
Confidence               247899999999998      778999999999999999999999 7777 899999998765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.33  E-value=9.7e-10  Score=112.51  Aligned_cols=237  Identities=10%  Similarity=0.031  Sum_probs=142.8

Q ss_pred             EEEEEeCC------CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          156 TVIFSNYK------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       156 ~l~f~~~~------~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      .+++....      ++.|+++|+.++ .....+...     .......|+|||+++++.....        ..|+++|++
T Consensus        54 ~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~v~~~~~--------~~v~~~d~~  119 (353)
T 3vgz_A           54 ALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHND-----LKPFGATINNTTQTLWFGNTVN--------SAVTAIDAK  119 (353)
T ss_dssp             EEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEES-----SCCCSEEEETTTTEEEEEETTT--------TEEEEEETT
T ss_pred             EEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEecC-----CCcceEEECCCCCEEEEEecCC--------CEEEEEeCC
Confidence            56555533      557999999876 222333321     2345678999999887765432        579999999


Q ss_pred             CCCcccceecccCCCc---------ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          230 GQNIQEPKVLVSGSDF---------YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~---------~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      +++.  ...+..+...         .....|||||++|++..+..      ...|+++|..++.   ....+....    
T Consensus       120 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~~i~~~d~~~~~---~~~~~~~~~----  184 (353)
T 3vgz_A          120 TGEV--KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK------ESVIWVVDGGNIK---LKTAIQNTG----  184 (353)
T ss_dssp             TCCE--EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS------SCEEEEEETTTTE---EEEEECCCC----
T ss_pred             CCee--EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC------CceEEEEcCCCCc---eEEEecCCC----
Confidence            8873  2333222111         23468999999988776432      3469999988762   333333222    


Q ss_pred             ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (623)
Q Consensus       301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~  380 (623)
                      ..+..+.|+|||+.+|+.+. +  ..|+.+|+.+++..........  .+.  .....+.+.   |+++.+|+...  +.
T Consensus       185 ~~~~~~~~s~dg~~l~~~~~-~--~~i~~~d~~~~~~~~~~~~~~~--~~~--~~~~~~~~s---~dg~~l~~~~~--~~  252 (353)
T 3vgz_A          185 KMSTGLALDSEGKRLYTTNA-D--GELITIDTADNKILSRKKLLDD--GKE--HFFINISLD---TARQRAFITDS--KA  252 (353)
T ss_dssp             TTCCCCEEETTTTEEEEECT-T--SEEEEEETTTTEEEEEEECCCS--SSC--CCEEEEEEE---TTTTEEEEEES--SS
T ss_pred             CccceEEECCCCCEEEEEcC-C--CeEEEEECCCCeEEEEEEcCCC--CCC--cccceEEEC---CCCCEEEEEeC--CC
Confidence            34568899999995555554 3  3678899988875544322100  000  000122333   38888877653  34


Q ss_pred             EEEEEEeCCCCcee-ecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          381 SYLGILDDFGHSLS-LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       381 ~~L~~~d~~~~~~~-~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ..|+++|+.+++.. .+..+....-.++++++++++....   ...|+++++++++.
T Consensus       253 ~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          253 AEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQ---AGKVSVIDAKSYKV  306 (353)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETT---TTEEEEEETTTTEE
T ss_pred             CEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECC---CCeEEEEECCCCeE
Confidence            56888999877654 4444332222337788877766532   25789999887763

>4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58}

Probab=99.33  E-value=1.4e-12  Score=130.25  Aligned_cols=145  Identities=12%  Similarity=0.089  Sum_probs=94.3

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECC--CCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNY--GGSTG  537 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~--rGs~~  537 (623)
                      .+.+.+.+...|..+.+.+|.|++.+     ++++|+||++||++...... ......+.++++||+|+.+|.  ||.+.
T Consensus        22 ~~~~~~~s~~~~~~~~~~v~~P~~~~-----~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~   96 (283)
T 4b6g_A           22 QQVWAHHAQTLQCEMKFAVYLPNNPE-----NRPLGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQV   96 (283)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCCTT-----CCCEEEEEEECCTTCCSHHHHHHSCTHHHHHHHTCEEEEECSSCCSTTS
T ss_pred             EEEEEEechhhCCceEEEEEeCCCCC-----CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEEeccccccccc
Confidence            34555555436889999999998732     56789999999985443321 112345677788999999995  44432


Q ss_pred             ---------CchhH-HHhhccCCc-cch-HHHHH-HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEe
Q 006979          538 ---------YGREF-RERLLGRWG-IVD-VNDCC-SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGAS  603 (623)
Q Consensus       538 ---------~g~~~-~~~~~~~~g-~~~-~~D~~-~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~  603 (623)
                               .|..+ .......+. ... .+.+. +++.++.+.. -+++||+|+|+|+||++++.++ .+|++|+++++
T Consensus        97 ~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~  175 (283)
T 4b6g_A           97 PNDDAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRLIEKHF-PTNGKRSIMGHSMGGHGALVLALRNQERYQSVSA  175 (283)
T ss_dssp             CCCSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHS-CEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             cccccccccCCCcccccCccCcccchhhHHHHHHHHHHHHHHHhC-CCCCCeEEEEEChhHHHHHHHHHhCCccceeEEE
Confidence                     22221 111111111 111 22222 3444444432 2578999999999999999988 88999999999


Q ss_pred             cccCCCHH
Q 006979          604 LYGVSIPV  611 (623)
Q Consensus       604 ~~g~~d~~  611 (623)
                      .+|+.++.
T Consensus       176 ~s~~~~~~  183 (283)
T 4b6g_A          176 FSPILSPS  183 (283)
T ss_dssp             ESCCCCGG
T ss_pred             ECCccccc
Confidence            99988754

>3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis}

Probab=99.32  E-value=5.7e-12  Score=123.83  Aligned_cols=132  Identities=13%  Similarity=0.115  Sum_probs=95.4

Q ss_pred             cEEEEe-ecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          461 PELIEF-PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       461 ~~~i~~-~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      .+.+.+ .+. +|..++.+.+.+.+        .+.|+||++||++.......+......++++||.|+.+|+||.|...
T Consensus        11 ~~~~~~~~~~-~g~~l~~~~~~~~~--------~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~   81 (270)
T 3llc_A           11 THAITVGQGS-DARSIAALVRAPAQ--------DERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASG   81 (270)
T ss_dssp             EEEEEESSGG-GCEEEEEEEECCSS--------TTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTSTTCC
T ss_pred             cceEEEeecc-CcceEEEEeccCCC--------CCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCCCCC
Confidence            344554 445 78889877676643        23589999999854433223345677788999999999999977654


Q ss_pred             hhHHHhhccCCc-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-c---CC---CceeEEEecccCCCHH
Q 006979          540 REFRERLLGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-A---FR---DTFKAGASLYGVSIPV  611 (623)
Q Consensus       540 ~~~~~~~~~~~g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~---~~---~~f~a~v~~~g~~d~~  611 (623)
                      .....     .. ....+|+.++++++.      .++|.++|||+||++++.++ .   +|   +.++++|..+|..++.
T Consensus        82 ~~~~~-----~~~~~~~~d~~~~~~~l~------~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~  150 (270)
T 3llc_A           82 GAFRD-----GTISRWLEEALAVLDHFK------PEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFT  150 (270)
T ss_dssp             SCGGG-----CCHHHHHHHHHHHHHHHC------CSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHH
T ss_pred             Ccccc-----ccHHHHHHHHHHHHHHhc------cCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccch
Confidence            43211     11 112556666666663      57999999999999999998 7   89   8999999999998876


Q ss_pred             H
Q 006979          612 I  612 (623)
Q Consensus       612 ~  612 (623)
                      .
T Consensus       151 ~  151 (270)
T 3llc_A          151 S  151 (270)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728}

Probab=99.32  E-value=2.6e-11  Score=114.32  Aligned_cols=125  Identities=11%  Similarity=0.075  Sum_probs=95.6

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH--HhHHHHcCceEEEEECCCCCCCC-
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGGSTGY-  538 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~--~~~~~a~~G~~v~~~d~rGs~~~-  538 (623)
                      +...+..  +|.++++++|.|.+         +.|+||++||++.  ....+..  .++.|+++||.|+.+|+||.+.. 
T Consensus         5 ~~~~~~~--~g~~l~~~~~~~~~---------~~~~vv~~hG~~~--~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~   71 (207)
T 3bdi_A            5 QEEFIDV--NGTRVFQRKMVTDS---------NRRSIALFHGYSF--TSMDWDKADLFNNYSKIGYNVYAPDYPGFGRSA   71 (207)
T ss_dssp             EEEEEEE--TTEEEEEEEECCTT---------CCEEEEEECCTTC--CGGGGGGGTHHHHHHTTTEEEEEECCTTSTTSC
T ss_pred             eeEEEee--CCcEEEEEEEeccC---------CCCeEEEECCCCC--CccccchHHHHHHHHhCCCeEEEEcCCcccccC
Confidence            3344444  78999999998864         3589999999953  3345666  88999999999999999986554 


Q ss_pred             --chhHHHhhccCCccc-hHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          539 --GREFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       539 --g~~~~~~~~~~~g~~-~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                        ...        .... +.+|+.+.+..++++  .+.++|+++|+|+||.+++.++ .+|++++++|..+|...
T Consensus        72 ~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~  136 (207)
T 3bdi_A           72 SSEKY--------GIDRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWV  136 (207)
T ss_dssp             CCTTT--------CCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSC
T ss_pred             cccCC--------CCCcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccc
Confidence              221        1122 567777777777665  3457999999999999999988 78999999999998743

>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp}

Probab=99.32  E-value=1.5e-12  Score=133.13  Aligned_cols=116  Identities=12%  Similarity=0.088  Sum_probs=89.1

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCc-ccCcCCHHhHHHH-cCceEEEEECCCCCCCCchhHHHhhccCCcc
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGI  552 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~-~~~~~~~~~~~~a-~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~  552 (623)
                      +.++++.|.+        ++.|+||++|||++.. ....+...+..|+ +.||.|+.+||||+++....           
T Consensus        84 ~~~~~~~p~~--------~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~~~-----------  144 (326)
T 3d7r_A           84 MQVFRFNFRH--------QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFHID-----------  144 (326)
T ss_dssp             EEEEEEESTT--------CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSCHH-----------
T ss_pred             EEEEEEeeCC--------CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCCch-----------
Confidence            5667777753        3458999999986432 2223445566676 46999999999997653221           


Q ss_pred             chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCc----eeEEEecccCCCHH
Q 006979          553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDT----FKAGASLYGVSIPV  611 (623)
Q Consensus       553 ~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~----f~a~v~~~g~~d~~  611 (623)
                      ..++|+.++++++.++  +|++||+|+|+|+||++++.++ .+++.    ++++|+.+|+.|+.
T Consensus       145 ~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~  206 (326)
T 3d7r_A          145 DTFQAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDAT  206 (326)
T ss_dssp             HHHHHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTT
T ss_pred             HHHHHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccC
Confidence            2378999999999887  7889999999999999999988 66655    99999999988764

>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A

Probab=99.31  E-value=2.3e-12  Score=128.80  Aligned_cols=106  Identities=17%  Similarity=0.115  Sum_probs=82.8

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .+.||++||.+.  ....|...++.|+++||.|+++|+||.|.+.....   ...+ ....+|+.+++++|.+.    .+
T Consensus        51 ~~~VlllHG~~~--s~~~~~~la~~La~~Gy~Via~Dl~GhG~S~~~~~---~~~~-~~~~~d~~~~~~~l~~~----~~  120 (281)
T 4fbl_A           51 RIGVLVSHGFTG--SPQSMRFLAEGFARAGYTVATPRLTGHGTTPAEMA---ASTA-SDWTADIVAAMRWLEER----CD  120 (281)
T ss_dssp             SEEEEEECCTTC--CGGGGHHHHHHHHHTTCEEEECCCTTSSSCHHHHH---TCCH-HHHHHHHHHHHHHHHHH----CS
T ss_pred             CceEEEECCCCC--CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCcccc---CCCH-HHHHHHHHHHHHHHHhC----CC
Confidence            356889999743  33467788999999999999999999665543322   1111 12368899999999765    36


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      +|.|+||||||++++.++ .+|++++++|..+|..++
T Consensus       121 ~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~  157 (281)
T 4fbl_A          121 VLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRM  157 (281)
T ss_dssp             EEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCC
T ss_pred             eEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcc
Confidence            999999999999999999 899999999999997654

>1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16

Probab=99.30  E-value=7.4e-12  Score=123.47  Aligned_cols=128  Identities=18%  Similarity=0.181  Sum_probs=95.1

Q ss_pred             cEEEEeecC-CCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          461 PELIEFPTE-VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       461 ~~~i~~~~~-~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      .+.+.++.. .++.. .+.+|.|....     .++.|+||++||...  ....+...++.|+++||.|+.+|+||.+...
T Consensus        25 ~~~~~~~~~~~~~~~-~~~l~~p~~~~-----~~~~p~vv~~HG~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~   96 (262)
T 1jfr_A           25 TSQTSVSSLVASGFG-GGTIYYPTSTA-----DGTFGAVVISPGFTA--YQSSIAWLGPRLASQGFVVFTIDTNTTLDQP   96 (262)
T ss_dssp             EEEEEECTTTCSSSC-CEEEEEESCCT-----TCCEEEEEEECCTTC--CGGGTTTHHHHHHTTTCEEEEECCSSTTCCH
T ss_pred             ccceEecceeccCCC-ceeEEecCCCC-----CCCCCEEEEeCCcCC--CchhHHHHHHHHHhCCCEEEEeCCCCCCCCC
Confidence            445555543 12222 34566665411     356799999999843  3446777889999999999999999976543


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHh----CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~----~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ..            ..+|+.++++++.+    ...+|.++|+++|||+||++++.++ .+|+ ++++|..+|...
T Consensus        97 ~~------------~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~  158 (262)
T 1jfr_A           97 DS------------RGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT  158 (262)
T ss_dssp             HH------------HHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS
T ss_pred             ch------------hHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc
Confidence            21            25688899999987    3457789999999999999999999 7787 899999998754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.29  E-value=2.4e-10  Score=116.04  Aligned_cols=233  Identities=11%  Similarity=0.040  Sum_probs=137.9

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCe--eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLV--SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~--~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~  234 (623)
                      ++++...++.|+++|+.++ .....+...    ..  ....+.|+|||+++++.....        ..|+++|+.+++. 
T Consensus         3 ~~v~~~~~~~v~~~d~~~~-~~~~~~~~~----~~~~~~~~~~~s~dg~~l~v~~~~~--------~~v~~~d~~~~~~-   68 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKM-AVDKVITIA----DAGPTPMVPMVAPGGRIAYATVNKS--------ESLVKIDLVTGET-   68 (337)
T ss_dssp             EEEEEETTTEEEEEETTTT-EEEEEEECT----TCTTCCCCEEECTTSSEEEEEETTT--------TEEEEEETTTCCE-
T ss_pred             EEEEcCCCCeEEEEECCCC-cEEEEEEcC----CCCCCccceEEcCCCCEEEEEeCCC--------CeEEEEECCCCCe-
Confidence            4566667788999999876 222333322    11  345688999999887765432        5799999988862 


Q ss_pred             cceecccCC-----CcccceeeCCCCCEEEEEEecCC-CCCC---CceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          235 EPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHHP-NMPW---DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       235 ~~~~l~~~~-----~~~~~p~wSPDG~~la~~~~~~~-~~p~---~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                       ...+..+.     .......|||||++|++...... ...+   ....|+++|++++.   ....+.. .    ..+..
T Consensus        69 -~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~-~----~~~~~  139 (337)
T 1pby_B           69 -LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS---RRKAFEA-P----RQITM  139 (337)
T ss_dssp             -EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE---EEEEEEC-C----SSCCC
T ss_pred             -EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc---EEEEEeC-C----CCcce
Confidence             22333221     13456789999999987742100 0000   13569999997662   2233332 2    34567


Q ss_pred             ceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC-----
Q 006979          306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-----  379 (623)
Q Consensus       306 ~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-----  379 (623)
                      +.|+|||+ +++. +     ..|+.+|+.+++...............|.+            +++.+++.....+     
T Consensus       140 ~~~s~dg~~l~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~------------dg~~l~~~~~~~~~~~~~  201 (337)
T 1pby_B          140 LAWARDGSKLYGL-G-----RDLHVMDPEAGTLVEDKPIQSWEAETYAQP------------DVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             EEECTTSSCEEEE-S-----SSEEEEETTTTEEEEEECSTTTTTTTBCCC------------BCCCCCCCCTTTTEEEEE
T ss_pred             eEECCCCCEEEEe-C-----CeEEEEECCCCcEeeeeeccccCCCceeCC------------CccEEeeeccCCCceeee
Confidence            89999999 5554 2     258899998887654443221111223433            4444433322111     


Q ss_pred             ----------------eEEEEEEeCCCCceeecccCC--cceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          380 ----------------RSYLGILDDFGHSLSLLDIPF--TDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       380 ----------------~~~L~~~d~~~~~~~~lt~~~--~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                                      ...|+++|+.+++...+....  .....+  +++++.+++.      ...|+++++++++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~------~~~v~~~d~~~~~~  272 (337)
T 1pby_B          202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA------YNVLESFDLEKNAS  272 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE------ESEEEEEETTTTEE
T ss_pred             eeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe------CCeEEEEECCCCcC
Confidence                            126899999988776443321  122233  7777777765      26899999988764

>1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3

Probab=99.29  E-value=1.4e-11  Score=124.66  Aligned_cols=142  Identities=13%  Similarity=0.164  Sum_probs=93.7

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH---HhHHHHcCceEEEEECCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~---~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      +.+.+++.+...+..+..+ +.|.        .+++|+||++||++.......|..   ..++++++||+|+.+|+++++
T Consensus         8 ~v~~~~~~S~~~~~~i~v~-~~p~--------~~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~   78 (304)
T 1sfr_A            8 PVEYLQVPSPSMGRDIKVQ-FQSG--------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSS   78 (304)
T ss_dssp             CCEEEEEEETTTTEEEEEE-EECC--------STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTC
T ss_pred             eEEEEEEECccCCCceEEE-ECCC--------CCCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCc
Confidence            5567777775346778866 5553        246899999999853222223322   346778899999999998765


Q ss_pred             CCchhHHHhh--ccCCccchHHHH--HHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          537 GYGREFRERL--LGRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       537 ~~g~~~~~~~--~~~~g~~~~~D~--~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      .|.. +....  .+..+....++.  .+++.++.++-.++++|++|+|+||||++++.++ ++|++|+++|+++|..++.
T Consensus        79 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~  157 (304)
T 1sfr_A           79 FYSD-WYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPS  157 (304)
T ss_dssp             TTCB-CSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTT
T ss_pred             cccc-cCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcc
Confidence            4421 10000  000011223333  2445555543347788999999999999999988 8999999999999987653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.29  E-value=1.1e-10  Score=119.15  Aligned_cols=249  Identities=11%  Similarity=0.079  Sum_probs=140.7

Q ss_pred             CHHHHhccCCc-cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-E
Q 006979           80 TADVVSGASKR-LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-T  156 (623)
Q Consensus        80 t~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~  156 (623)
                      +++.+...... .+++.|+| ++.+||++...   +  .|++++..++ +.+.+....          ...++.++++ .
T Consensus        39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~---~--~i~~~d~~~~-~~~~~~~~~----------~v~~i~~~~dg~  102 (326)
T 2ghs_A           39 AGRVLDETPMLLGEGPTFDPASGTAWWFNILE---R--ELHELHLASG-RKTVHALPF----------MGSALAKISDSK  102 (326)
T ss_dssp             CCEEEECSCCSBEEEEEEETTTTEEEEEEGGG---T--EEEEEETTTT-EEEEEECSS----------CEEEEEEEETTE
T ss_pred             ceEEeeccCCCCCcCCeEeCCCCEEEEEECCC---C--EEEEEECCCC-cEEEEECCC----------cceEEEEeCCCe
Confidence            45666665444 47899999 89999998663   2  3777776532 222211111          1233444444 5


Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCC-CCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~-~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      +++..  ...|+++|++++  ..+.+.... ..+..+.+++.++|+|+.++.......   ......||+++  +++   
T Consensus       103 l~v~~--~~gl~~~d~~~g--~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~---~~~~~~l~~~~--~g~---  170 (326)
T 2ghs_A          103 QLIAS--DDGLFLRDTATG--VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA---ETGAGSIYHVA--KGK---  170 (326)
T ss_dssp             EEEEE--TTEEEEEETTTC--CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC---CTTCEEEEEEE--TTE---
T ss_pred             EEEEE--CCCEEEEECCCC--cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC---CCCceEEEEEe--CCc---
Confidence            55554  334999999877  555554321 122356788999999985544332211   11237899999  455   


Q ss_pred             ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec-CCC-ceeeeEEEcCCC-CCccccCcCceeCCCC
Q 006979          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENG-DVYKRVCVAGFD-PTIVESPTEPKWSSKG  312 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~-~~~-~~~~~~~~~~~~-~~~~~~~~~~~ws~DG  312 (623)
                      .+.+..+......+.|||||++|++....       ...|++++++ ..+ .+...+.+.... ..  ..+....+++||
T Consensus       171 ~~~~~~~~~~~~~i~~s~dg~~lyv~~~~-------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~--~~p~gi~~d~~G  241 (326)
T 2ghs_A          171 VTKLFADISIPNSICFSPDGTTGYFVDTK-------VNRLMRVPLDARTGLPTGKAEVFIDSTGIK--GGMDGSVCDAEG  241 (326)
T ss_dssp             EEEEEEEESSEEEEEECTTSCEEEEEETT-------TCEEEEEEBCTTTCCBSSCCEEEEECTTSS--SEEEEEEECTTS
T ss_pred             EEEeeCCCcccCCeEEcCCCCEEEEEECC-------CCEEEEEEcccccCCcccCceEEEECCCCC--CCCCeeEECCCC
Confidence            45554433445678899999999887522       3469999986 222 222222222111 01  344567888999


Q ss_pred             cEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       313 ~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                      .+++ +..  +...|+++|+++...+.+......+.         ...|.  .++++.||++....+
T Consensus       242 ~lwv-a~~--~~~~v~~~d~~g~~~~~i~~~~~~~~---------~~af~--g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          242 HIWN-ARW--GEGAVDRYDTDGNHIARYEVPGKQTT---------CPAFI--GPDASRLLVTSAREH  294 (326)
T ss_dssp             CEEE-EEE--TTTEEEEECTTCCEEEEEECSCSBEE---------EEEEE--STTSCEEEEEEBCTT
T ss_pred             CEEE-EEe--CCCEEEEECCCCCEEEEEECCCCCcE---------EEEEe--cCCCCEEEEEecCCC
Confidence            7554 433  22368899985444444432211111         12221  026677877776554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.29  E-value=6.1e-10  Score=117.82  Aligned_cols=246  Identities=11%  Similarity=0.070  Sum_probs=148.4

Q ss_pred             eEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCC--CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       149 ~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~--~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+++++ .+++....++.|+++|+.++  ........  ............|+|+|+.++. ....        ..|++
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s-~~~d--------~~v~~  195 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKLGFVETISIPEHNELWVS-QMQA--------NAVHV  195 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEE-EGGG--------TEEEE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccCCceeEEEEcCCCEEEEE-ECCC--------CEEEE
Confidence            3445544 78888777778999999877  44332221  0011234567889999875544 3322        56999


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      +|+++++.  ...+...........|+|||++|++....       ...|+++|+.++.   ....+.. .    ..+..
T Consensus       196 ~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~i~~~d~~~~~---~~~~~~~-~----~~~~~  258 (433)
T 3bws_A          196 FDLKTLAY--KATVDLTGKWSKILLYDPIRDLVYCSNWI-------SEDISVIDRKTKL---EIRKTDK-I----GLPRG  258 (433)
T ss_dssp             EETTTCCE--EEEEECSSSSEEEEEEETTTTEEEEEETT-------TTEEEEEETTTTE---EEEECCC-C----SEEEE
T ss_pred             EECCCceE--EEEEcCCCCCeeEEEEcCCCCEEEEEecC-------CCcEEEEECCCCc---EEEEecC-C----CCceE
Confidence            99988762  23343334455667899999988776532       2359999987662   2222322 2    34678


Q ss_pred             ceeCCCCc-EEEEEeCCC----CeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979          306 PKWSSKGE-LFFVTDRKN----GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (623)
Q Consensus       306 ~~ws~DG~-l~~~~~~~~----g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~  380 (623)
                      +.|+|||+ +++......    +...|+.+|+.+++...............|.            |+++.++++...++ 
T Consensus       259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~------------~~g~~l~~~~~~~~-  325 (433)
T 3bws_A          259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSG------------NTENKIYVSDMCCS-  325 (433)
T ss_dssp             EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEEC------------SSTTEEEEEETTTT-
T ss_pred             EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEEC------------CCCCEEEEEecCCC-
Confidence            89999998 554443211    2357889999888765544322222222332            37778888765555 


Q ss_pred             EEEEEEeCCCCceeecccCCcceEee--eecCCEEEEEEecCCC-----------CCeEEEEEcCCCcc
Q 006979          381 SYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVE-----------PSSVAKVTLDDHKL  436 (623)
Q Consensus       381 ~~L~~~d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~-----------~~~ly~~~l~~~~~  436 (623)
                       .|+++|+++++..........+..+  +++++.+++.......           ...|+++++++++.
T Consensus       326 -~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~  393 (433)
T 3bws_A          326 -KIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV  393 (433)
T ss_dssp             -EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred             -EEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence             5666788777654322222334444  6677777666543322           24899999887763

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.28  E-value=7.1e-10  Score=112.86  Aligned_cols=262  Identities=11%  Similarity=0.061  Sum_probs=137.0

Q ss_pred             ceEEEeCC--EEEEEeCCCCcEEEEeCC--CCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          148 GAFRIFGD--TVIFSNYKDQRLYKHSID--SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       148 ~~~~~s~d--~l~f~~~~~~~l~~~d~~--~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      ...+++++  .+++....++.|.+++++  ++  ..+.+.... . ........|+|||++|++.....        ..|
T Consensus        41 ~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~~--------~~i  108 (343)
T 1ri6_A           41 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--ALTFAAESA-L-PGSLTHISTDHQGQFVFVGSYNA--------GNV  108 (343)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEEECTTTC--CEEEEEEEE-C-SSCCSEEEECTTSSEEEEEETTT--------TEE
T ss_pred             ceEEECCCCCEEEEeecCCCeEEEEEecCCCC--ceeeccccc-c-CCCCcEEEEcCCCCEEEEEecCC--------CeE
Confidence            34555555  566666555778877765  55  444332210 0 12345678999999887765432        457


Q ss_pred             EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeE--EEcCCCCCccc
Q 006979          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV--CVAGFDPTIVE  301 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~--~~~~~~~~~~~  301 (623)
                      +++|++.+...................|||||++|+.....       ...|+++++...+.+....  ...... .  .
T Consensus       109 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~-~--~  178 (343)
T 1ri6_A          109 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-------QDRICLFTVSDDGHLVAQDPAEVTTVE-G--A  178 (343)
T ss_dssp             EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEEEECST-T--C
T ss_pred             EEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-------CCEEEEEEecCCCceeeecccccccCC-C--C
Confidence            77777433210122223333345567899999998766522       2358999998743322111  122111 1  2


Q ss_pred             cCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec---ccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (623)
Q Consensus       302 ~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~---~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~  378 (623)
                      .+..+.|+|||+.+++.....+.-.+|.++..+++.+.+...   ...+....+   ...+.+   +|+++.++++...+
T Consensus       179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~i~~---s~dg~~l~v~~~~~  252 (343)
T 1ri6_A          179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW---AADIHI---TPDGRHLYACDRTA  252 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC---EEEEEE---CTTSSEEEEEETTT
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC---ccceEE---CCCCCEEEEEecCC
Confidence            345688999999444444324544444444345554332211   111111100   012333   34888887776556


Q ss_pred             CeEEEEEEeCCCCceeecc---cCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          379 GRSYLGILDDFGHSLSLLD---IPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       379 g~~~L~~~d~~~~~~~~lt---~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      +.-.+|.++.+++..+.+.   .... +..+  +++++.+++... ....-.+|.++.++++.+.+
T Consensus       253 ~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~-~~~~v~v~~~d~~~g~~~~~  316 (343)
T 1ri6_A          253 SLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ-KSHHISVYEIVGEQGLLHEK  316 (343)
T ss_dssp             TEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECT-TTCEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecC-CCCeEEEEEEcCCCceeeEc
Confidence            6656665554455554432   2222 3333  667776665543 33334567778777765444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.28  E-value=3.8e-10  Score=113.24  Aligned_cols=258  Identities=10%  Similarity=0.003  Sum_probs=151.3

Q ss_pred             HHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEE
Q 006979           82 DVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIF  159 (623)
Q Consensus        82 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f  159 (623)
                      +.+......++++.|+| ++.+||++...   +  .|++++..+  ..+.+....         .....++++++ .+++
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~---~--~i~~~~~~~--~~~~~~~~~---------~~~~~l~~~~dg~l~v   84 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQ---N--RTWAWSDDG--QLSPEMHPS---------HHQNGHCLNKQGHLIA   84 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGG---T--EEEEEETTS--CEEEEESSC---------SSEEEEEECTTCCEEE
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCC---C--EEEEEECCC--CeEEEECCC---------CCcceeeECCCCcEEE
Confidence            33444445567899999 77799998663   3  367776652  222221111         01234555554 5666


Q ss_pred             EeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEec-cC--------CCCCCceeEEEEEEcC
Q 006979          160 SNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVRED-RR--------QDALNSTTEIVAIALN  229 (623)
Q Consensus       160 ~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~-~~--------~~~~~~~~~L~~idl~  229 (623)
                      ....++.|+++|++++  ..+.+... ...+..+..+..++|+|+.++ +... ..        .........||+++.+
T Consensus        85 ~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v-td~~~g~~~~~~~~~~~~~~~~~~l~~~~~~  161 (296)
T 3e5z_A           85 CSHGLRRLERQREPGG--EWESIADSFEGKKLNSPNDVCLAPDGSLWF-SDPTYGIDKPEEGYGGEMELPGRWVFRLAPD  161 (296)
T ss_dssp             EETTTTEEEEECSTTC--CEEEEECEETTEECCCCCCEEECTTSCEEE-EECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred             EecCCCeEEEEcCCCC--cEEEEeeccCCCCCCCCCCEEECCCCCEEE-ECCccccccccccccccccCCCcEEEEECCC
Confidence            6655677999999776  55555332 111122456789999998443 2210 00        0000112589999987


Q ss_pred             CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCce-eeeEEEcCCCCCccccCcCcee
Q 006979          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                       ++   .+.+...........|||||+.| +....       ...|++++++..+.+ .....+ ... .  ..+..+.+
T Consensus       162 -g~---~~~~~~~~~~~~gi~~s~dg~~l-v~~~~-------~~~i~~~~~~~~g~~~~~~~~~-~~~-~--~~p~~i~~  225 (296)
T 3e5z_A          162 -GT---LSAPIRDRVKPNGLAFLPSGNLL-VSDTG-------DNATHRYCLNARGETEYQGVHF-TVE-P--GKTDGLRV  225 (296)
T ss_dssp             -SC---EEEEECCCSSEEEEEECTTSCEE-EEETT-------TTEEEEEEECSSSCEEEEEEEE-CCS-S--SCCCSEEE
T ss_pred             -CC---EEEeecCCCCCccEEECCCCCEE-EEeCC-------CCeEEEEEECCCCcCcCCCeEe-eCC-C--CCCCeEEE
Confidence             55   55555555556678899999988 66522       346999998744443 334444 222 1  45678899


Q ss_pred             CCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      ++||++++.. .    ..|+++|+++...+.+..... ..         ...|-  +++++.|++++.    ..|+++++
T Consensus       226 d~~G~l~v~~-~----~~v~~~~~~g~~~~~~~~~~~-~~---------~~~f~--~~d~~~L~v~t~----~~l~~~~~  284 (296)
T 3e5z_A          226 DAGGLIWASA-G----DGVHVLTPDGDELGRVLTPQT-TS---------NLCFG--GPEGRTLYMTVS----TEFWSIET  284 (296)
T ss_dssp             BTTSCEEEEE-T----TEEEEECTTSCEEEEEECSSC-CC---------EEEEE--STTSCEEEEEET----TEEEEEEC
T ss_pred             CCCCCEEEEc-C----CeEEEECCCCCEEEEEECCCC-ce---------eEEEE--CCCCCEEEEEcC----CeEEEEEc
Confidence            9999866555 2    258889987554454442211 22         22221  126677877763    26999999


Q ss_pred             CCCceee
Q 006979          389 FGHSLSL  395 (623)
Q Consensus       389 ~~~~~~~  395 (623)
                      .++.++.
T Consensus       285 ~~~~~~~  291 (296)
T 3e5z_A          285 NVRGLEH  291 (296)
T ss_dssp             SCCBCCC
T ss_pred             ccccccc
Confidence            8877653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.27  E-value=9.5e-10  Score=111.61  Aligned_cols=245  Identities=9%  Similarity=-0.026  Sum_probs=141.4

Q ss_pred             eEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCC-CCeeecceeeCCCCCEEEEEEeccCCCCCC---ceeE
Q 006979          149 AFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQDALN---STTE  222 (623)
Q Consensus       149 ~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~-~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~---~~~~  222 (623)
                      ..+++++  .+++....++.|+++|+.++ .....+...... .......+.|+|||++|++........+.+   ....
T Consensus        38 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  116 (337)
T 1pby_B           38 VPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR  116 (337)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             ceEEcCCCCEEEEEeCCCCeEEEEECCCC-CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence            3455554  57777777788999999876 222334432000 011345688999999888775211000000   1267


Q ss_pred             EEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979          223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (623)
Q Consensus       223 L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~  302 (623)
                      |+++|+++++.  ...+.. ........|||||++|++.  +.        .|+++|+.++.   ....+....     .
T Consensus       117 i~v~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~--~~--------~i~~~d~~~~~---~~~~~~~~~-----~  175 (337)
T 1pby_B          117 VALYDAETLSR--RKAFEA-PRQITMLAWARDGSKLYGL--GR--------DLHVMDPEAGT---LVEDKPIQS-----W  175 (337)
T ss_dssp             EEEEETTTTEE--EEEEEC-CSSCCCEEECTTSSCEEEE--SS--------SEEEEETTTTE---EEEEECSTT-----T
T ss_pred             EEEEECCCCcE--EEEEeC-CCCcceeEECCCCCEEEEe--CC--------eEEEEECCCCc---Eeeeeeccc-----c
Confidence            99999988762  223332 3334567899999998876  21        28999998762   222232211     1


Q ss_pred             CcCceeCCCCc-EEEEEeCCCCe---------------------eeEEEEecCCCeEEEEeecccccccccccccCccee
Q 006979          303 PTEPKWSSKGE-LFFVTDRKNGF---------------------WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYE  360 (623)
Q Consensus       303 ~~~~~ws~DG~-l~~~~~~~~g~---------------------~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~  360 (623)
                      .....|+|||+ +++.... .+.                     +.|+.+|+.+++...+...... ..      ...+.
T Consensus       176 ~~~~~~s~dg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~------~~~~~  247 (337)
T 1pby_B          176 EAETYAQPDVLAVWNQHES-SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD-VF------YFSTA  247 (337)
T ss_dssp             TTTTBCCCBCCCCCCCCTT-TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS-SC------EEEEE
T ss_pred             CCCceeCCCccEEeeeccC-CCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCC-Cc------eeeEE
Confidence            23458999998 5443322 222                     1678899988876533321110 00      01122


Q ss_pred             EEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-ecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          361 IIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       361 ~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      +   +|+++.+++.     ...|+++|+++++.. .+..+. ....+  +++++++++. .   ....|+++++++++.
T Consensus       248 ~---s~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~-~---~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          248 V---NPAKTRAFGA-----YNVLESFDLEKNASIKRVPLPH-SYYSVNVSTDGSTVWLG-G---ALGDLAAYDAETLEK  313 (337)
T ss_dssp             E---CTTSSEEEEE-----ESEEEEEETTTTEEEEEEECSS-CCCEEEECTTSCEEEEE-S---BSSEEEEEETTTCCE
T ss_pred             E---CCCCCEEEEe-----CCeEEEEECCCCcCcceecCCC-ceeeEEECCCCCEEEEE-c---CCCcEEEEECcCCcE
Confidence            3   3388877776     257889999887654 333332 22233  6777777664 2   246799999988764

>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*

Probab=99.27  E-value=1.3e-11  Score=127.90  Aligned_cols=145  Identities=19%  Similarity=0.095  Sum_probs=100.3

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc----CCHHhHHHHcCceEEEEECCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI----LNLSIQYWTSRGWAFVDVNYGGS  535 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~----~~~~~~~~a~~G~~v~~~d~rGs  535 (623)
                      ..+...+.+. +|..++++.+.|....  ..+.++.|.||++||.+.......    +...++.|+++||.|+++|+||.
T Consensus        26 ~~~~~~~~~~-dG~~l~~~~~~~~~~~--~~~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~  102 (377)
T 1k8q_A           26 PAEEYEVVTE-DGYILGIDRIPYGRKN--SENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN  102 (377)
T ss_dssp             CCEEEEEECT-TSEEEEEEEECSCSSC--CTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred             CceEEEeEcC-CCCEEEEEEecCCCCC--ccccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCC
Confidence            4577888887 9999998888775410  000135689999999865443211    22345589999999999999997


Q ss_pred             CCCchhHHH-hhcc---CCccch-HH-HHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC---ceeEEEecc
Q 006979          536 TGYGREFRE-RLLG---RWGIVD-VN-DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD---TFKAGASLY  605 (623)
Q Consensus       536 ~~~g~~~~~-~~~~---~~g~~~-~~-D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~---~f~a~v~~~  605 (623)
                      |.....-.. ....   .+...+ .+ |+.++++++.++  .+.+++.++|||+||.+++.++ .+|+   .++++|..+
T Consensus       103 G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~  180 (377)
T 1k8q_A          103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALA  180 (377)
T ss_dssp             TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEES
T ss_pred             CCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHh--cCcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeC
Confidence            655431000 0000   112112 34 888899988765  2347999999999999999988 7888   899999999


Q ss_pred             cCCC
Q 006979          606 GVSI  609 (623)
Q Consensus       606 g~~d  609 (623)
                      |...
T Consensus       181 ~~~~  184 (377)
T 1k8q_A          181 PVAT  184 (377)
T ss_dssp             CCSC
T ss_pred             Cchh
Confidence            8764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.26  E-value=1.3e-09  Score=110.95  Aligned_cols=267  Identities=6%  Similarity=-0.016  Sum_probs=144.5

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCCC
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ  165 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~  165 (623)
                      ..+..+.|+| ++.+|.....   ++...+|..+..++ +.+.+..-.       ........+++++  .+++....++
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~---~~~v~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~  106 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRP---EFRVLAYRIAPDDG-ALTFAAESA-------LPGSLTHISTDHQGQFVFVGSYNAG  106 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETT---TTEEEEEEECTTTC-CEEEEEEEE-------CSSCCSEEEECTTSSEEEEEETTTT
T ss_pred             CCCceEEECCCCCEEEEeecC---CCeEEEEEecCCCC-ceeeccccc-------cCCCCcEEEEcCCCCEEEEEecCCC
Confidence            3566789999 6667766532   36666776654322 222211000       0012345566655  5777776677


Q ss_pred             cEEEEeCCCCC-CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC-CCcccce--eccc
Q 006979          166 RLYKHSIDSKD-SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQEPK--VLVS  241 (623)
Q Consensus       166 ~l~~~d~~~g~-~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~-g~~~~~~--~l~~  241 (623)
                      .|+++++..+. .........    ........|+|||+++++.....        ..|+++|+.+ ++.....  .+..
T Consensus       107 ~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~--------~~v~~~d~~~~~~~~~~~~~~~~~  174 (343)
T 1ri6_A          107 NVSVTRLEDGLPVGVVDVVEG----LDGCHSANISPDNRTLWVPALKQ--------DRICLFTVSDDGHLVAQDPAEVTT  174 (343)
T ss_dssp             EEEEEEEETTEEEEEEEEECC----CTTBCCCEECTTSSEEEEEEGGG--------TEEEEEEECTTSCEEEEEEEEEEC
T ss_pred             eEEEEECCCCccccccccccC----CCCceEEEECCCCCEEEEecCCC--------CEEEEEEecCCCceeeeccccccc
Confidence            78888884220 011122221    12345688999999887655222        5688889877 6521111  1211


Q ss_pred             -CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC-CceeeeEEEcCCCCCc--cccCcCceeCCCCcEEEE
Q 006979          242 -GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTI--VESPTEPKWSSKGELFFV  317 (623)
Q Consensus       242 -~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~ws~DG~l~~~  317 (623)
                       .........|+|||++|++....       ...|.+++++.. +.+............+  ...+..+.|+|||+.+++
T Consensus       175 ~~~~~~~~~~~~pdg~~l~~~~~~-------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v  247 (343)
T 1ri6_A          175 VEGAGPRHMVFHPNEQYAYCVNEL-------NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA  247 (343)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETT-------TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceEEECCCCCEEEEEeCC-------CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence             12233446799999988877522       335888888642 2211122222111000  012335899999995555


Q ss_pred             EeCCCCeeeEEEEecCCCeEEEEee--cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceee
Q 006979          318 TDRKNGFWNLHKWIESNNEVLAIYS--LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL  395 (623)
Q Consensus       318 ~~~~~g~~~L~~~d~~~~~~~~l~~--~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~  395 (623)
                      +....+.-.+|.++..+++.+.+..  ......         .+.+.   ++++.|++....++.-.+|.+|.++++++.
T Consensus       248 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---------~~~~s---~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~  315 (343)
T 1ri6_A          248 CDRTASLITVFSVSEDGSVLSKEGFQPTETQPR---------GFNVD---HSGKYLIAAGQKSHHISVYEIVGEQGLLHE  315 (343)
T ss_dssp             EETTTTEEEEEEECTTSCCEEEEEEEECSSSCC---------CEEEC---TTSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred             EecCCCEEEEEEEcCCCCceEEeeeecCCCccc---------eEEEC---CCCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence            5542454444444433555444432  111122         23333   378878877766788889999988887765


Q ss_pred             cc
Q 006979          396 LD  397 (623)
Q Consensus       396 lt  397 (623)
                      +.
T Consensus       316 ~~  317 (343)
T 1ri6_A          316 KG  317 (343)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A

Probab=99.26  E-value=2e-12  Score=139.32  Aligned_cols=131  Identities=21%  Similarity=0.271  Sum_probs=92.7

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcCc-eEEEEECCC-CCCCCchhHHHhhccC
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRG-WAFVDVNYG-GSTGYGREFRERLLGR  549 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G-~~v~~~d~r-Gs~~~g~~~~~~~~~~  549 (623)
                      ..++..+|.|...      .+++|+||++|||+...... ......+.|+++| ++|+.+||| |..|++..-... ...
T Consensus        81 dcL~l~v~~P~~~------~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~  153 (489)
T 1qe3_A           81 DCLYVNVFAPDTP------SQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAY  153 (489)
T ss_dssp             CCCEEEEEEECSS------CCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTS
T ss_pred             CCCEEEEEeCCCC------CCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCcccccc-ccC
Confidence            3466777888652      33489999999997433222 2223467788876 999999999 433333210000 112


Q ss_pred             CccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCCCH
Q 006979          550 WGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVSIP  610 (623)
Q Consensus       550 ~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~d~  610 (623)
                      .+.....|+.++++|+.++.   .+|++||.|+|+|+||++++.++..   +++|+++|+.+|..++
T Consensus       154 ~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~  220 (489)
T 1qe3_A          154 SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRT  220 (489)
T ss_dssp             CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCC
T ss_pred             CCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCC
Confidence            33445789999999998752   3699999999999999999988843   5799999999998754

>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa}

Probab=99.25  E-value=4.7e-11  Score=120.00  Aligned_cols=130  Identities=13%  Similarity=0.159  Sum_probs=96.3

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+.+.+..  +|..+...++.+...      .+..|+||++||.+..  ...|...+..|+++||.|+.+|+||.|...
T Consensus        19 ~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~   88 (315)
T 4f0j_A           19 PVHYLDFTS--QGQPLSMAYLDVAPK------KANGRTILLMHGKNFC--AGTWERTIDVLADAGYRVIAVDQVGFCKSS   88 (315)
T ss_dssp             CCEEEEEEE--TTEEEEEEEEEECCS------SCCSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSC
T ss_pred             cceeEEEec--CCCCeeEEEeecCCC------CCCCCeEEEEcCCCCc--chHHHHHHHHHHHCCCeEEEeecCCCCCCC
Confidence            456677766  566666655544321      3456899999998543  345778889999999999999999976543


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ..       .......+|+.+.+..++++  ++.+++.++|||+||++++.++ .+|++++++|...|+.
T Consensus        89 ~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~  149 (315)
T 4f0j_A           89 KP-------AHYQYSFQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIG  149 (315)
T ss_dssp             CC-------SSCCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSC
T ss_pred             CC-------CccccCHHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcc
Confidence            31       11234567777777766665  3456999999999999999999 8899999999999864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.24  E-value=1.2e-09  Score=112.09  Aligned_cols=272  Identities=11%  Similarity=0.059  Sum_probs=138.8

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCCCc
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQR  166 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~~  166 (623)
                      ..+..+.++|++++|...... +++.  ++.++..++ +.+.+....      .+.......++++|  .+++....++.
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~-~~~~--v~~~~~~~g-~~~~~~~~~------~~~~~p~~~a~spdg~~l~~~~~~~~~  109 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKED-DEGG--IAAWQIDGQ-TAHKLNTVV------APGTPPAYVAVDEARQLVYSANYHKGT  109 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEET-TEEE--EEEEEEETT-EEEEEEEEE------EESCCCSEEEEETTTTEEEEEETTTTE
T ss_pred             CCcceEEEccCCeEEEEEecC-CCce--EEEEEecCC-cEEEeeeee------cCCCCCEEEEECCCCCEEEEEeCCCCE
Confidence            456678999944487776432 1244  444443322 222221100      01112344566665  57777666777


Q ss_pred             EEEEeCCCCCCCceecCC---CCCCC-----CeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC-CCCcccce
Q 006979          167 LYKHSIDSKDSSPLPITP---DYGEP-----LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQNIQEPK  237 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~---~~~~~-----~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~-~g~~~~~~  237 (623)
                      +.+++++.. ...+.+..   ....+     ........|+|||+ +++.....        ..+++++++ +++.....
T Consensus       110 v~v~~~~~~-g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~--------~~v~~~~~~~~g~~~~~~  179 (347)
T 3hfq_A          110 AEVMKIAAD-GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGS--------DKVYVYNVSDAGQLSEQS  179 (347)
T ss_dssp             EEEEEECTT-SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTT--------TEEEEEEECTTSCEEEEE
T ss_pred             EEEEEeCCC-CCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCC--------CEEEEEEECCCCcEEEee
Confidence            888887522 13332221   10000     11234578999999 55433221        468888887 55421111


Q ss_pred             eccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC-CceeeeEEEcCCCCCcc--ccCcCceeCCCCc
Q 006979          238 VLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIV--ESPTEPKWSSKGE  313 (623)
Q Consensus       238 ~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~ws~DG~  313 (623)
                      .+.. ........+|||||++|++....       ...+.+++++.. +.+.....+......+.  ..+..+.|+|||+
T Consensus       180 ~~~~~~g~~p~~~~~spdg~~l~v~~~~-------~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          180 VLTMEAGFGPRHLVFSPDGQYAFLAGEL-------SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH  252 (347)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETT-------TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred             eEEcCCCCCCceEEECCCCCEEEEEeCC-------CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence            1111 11123346899999988876522       234777777652 22222222222110000  1245688999999


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~  393 (623)
                      .+|+++...+.-.+|.++. +++.+.+.........      ...+.|.   |+++.|+++...++...+|.+|.+++++
T Consensus       253 ~l~v~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~------~~~~~~s---pdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTA-DGHLTLIQQISTEGDF------PRDFDLD---PTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             EEEEEEETTTEEEEEEECG-GGCEEEEEEEECSSSC------CCEEEEC---TTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEEeCCCCEEEEEEECC-CCcEEEeEEEecCCCC------cCeEEEC---CCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            5545544245445555443 3344443321110011      1233333   3888888877767888899999988888


Q ss_pred             eecc
Q 006979          394 SLLD  397 (623)
Q Consensus       394 ~~lt  397 (623)
                      +.+.
T Consensus       323 ~~~~  326 (347)
T 3hfq_A          323 SLLQ  326 (347)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            7654

>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}

Probab=99.23  E-value=7.5e-12  Score=119.33  Aligned_cols=112  Identities=11%  Similarity=0.033  Sum_probs=79.4

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHH----HHHHHHHHHh
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVND----CCSCATFLVG  567 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D----~~~~~~~l~~  567 (623)
                      ++..|+||++||..  .....+...++.|...||.|+.||.+|.+.|+..+......+.  ...++    +...++.+.+
T Consensus        19 ~~a~~~Vv~lHG~G--~~~~~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~   94 (210)
T 4h0c_A           19 QRAKKAVVMLHGRG--GTAADIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQNQ--PALDSALALVGEVVAEIEA   94 (210)
T ss_dssp             TTCSEEEEEECCTT--CCHHHHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGGGT--THHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCC--CCHHHHHHHHHHhCCCCeEEEeecCCCCCccccccCCCcccch--HHHHHHHHHHHHHHHHHHH
Confidence            45568999999963  2333455567778889999999999987655544332222111  12333    3334444445


Q ss_pred             CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          568 SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       568 ~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      . .+|++||+++|+|+||++++.++ ++|++|+++|+++|..
T Consensus        95 ~-~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l  135 (210)
T 4h0c_A           95 Q-GIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGL  135 (210)
T ss_dssp             T-TCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCC
T ss_pred             h-CCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCC
Confidence            5 48999999999999999999988 8999999999998853

>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A

Probab=99.23  E-value=2.5e-11  Score=119.76  Aligned_cols=109  Identities=15%  Similarity=0.036  Sum_probs=86.7

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|+||++||.+.  ....|...++.|+++||.|+.+|+||.|........   . .-....+|+.++++++.++    .+
T Consensus        40 ~~~vv~~HG~~~--~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~---~-~~~~~~~d~~~~i~~l~~~----~~  109 (270)
T 3rm3_A           40 PVGVLLVHGFTG--TPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMER---T-TFHDWVASVEEGYGWLKQR----CQ  109 (270)
T ss_dssp             SEEEEEECCTTC--CGGGTHHHHHHHHHTTCEEEECCCTTCSSCHHHHHT---C-CHHHHHHHHHHHHHHHHTT----CS
T ss_pred             CeEEEEECCCCC--ChhHHHHHHHHHHHCCCEEEEeCCCCCCCCcccccc---C-CHHHHHHHHHHHHHHHHhh----CC
Confidence            389999999853  334577889999999999999999997765442211   1 1122368899999999877    57


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~  614 (623)
                      +|+++|+|+||++++.++ .+|+ ++++|+.+|..++....
T Consensus       110 ~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~  149 (270)
T 3rm3_A          110 TIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIA  149 (270)
T ss_dssp             EEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHH
T ss_pred             cEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccc
Confidence            999999999999999998 7898 99999999988876554

>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}

Probab=99.23  E-value=5.8e-11  Score=118.12  Aligned_cols=117  Identities=21%  Similarity=0.244  Sum_probs=87.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc-CcC-CHHhHHHHcCceEEEEECCCCCCCCchhHHHhhcc
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GIL-NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG  548 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~-~~~-~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~  548 (623)
                      +|..+  .+|.|.+        ++.|+||++|||.+.... ..+ ......+++.||.|+.+|||+.+++  .|      
T Consensus        13 ~~~~~--~~y~p~~--------~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~--~~------   74 (274)
T 2qru_A           13 NGATV--TIYPTTT--------EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT--KI------   74 (274)
T ss_dssp             TSCEE--EEECCSS--------SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS--CH------
T ss_pred             CCeeE--EEEcCCC--------CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC--CC------
Confidence            55444  5677742        346899999999753332 233 3456678889999999999986532  22      


Q ss_pred             CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhc----CCCceeEEEecccCCC
Q 006979          549 RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVSI  609 (623)
Q Consensus       549 ~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~----~~~~f~a~v~~~g~~d  609 (623)
                         ...++|+.++++|+.++.. +++||+|+|+|+||++++.++.    ++..+++.+..+|+.|
T Consensus        75 ---p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~  135 (274)
T 2qru_A           75 ---DHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTD  135 (274)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSC
T ss_pred             ---cHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEccccc
Confidence               1248999999999987642 2789999999999999998873    4678899999999887

>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A

Probab=99.23  E-value=2.3e-11  Score=117.93  Aligned_cols=107  Identities=12%  Similarity=0.103  Sum_probs=84.5

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC-chhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY-GREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD  572 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~-g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d  572 (623)
                      ..|.||++||.+.  ....|...++.|+++||.|+.+|+||.|.. +......  ..+ ....+|+.++++++.++    
T Consensus        21 ~~~~vv~~HG~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~--~~~-~~~~~d~~~~i~~l~~~----   91 (251)
T 3dkr_A           21 TDTGVVLLHAYTG--SPNDMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTK--GNP-DIWWAESSAAVAHMTAK----   91 (251)
T ss_dssp             SSEEEEEECCTTC--CGGGGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHHHH--CCH-HHHHHHHHHHHHHHHTT----
T ss_pred             CCceEEEeCCCCC--CHHHHHHHHHHHHHCCCEEEecCCCCCCCCChhhhcCc--ccH-HHHHHHHHHHHHHHHHh----
Confidence            4578899999843  334677889999999999999999998766 3322211  011 12268899999999877    


Q ss_pred             CCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      .++++++|||+||++++.++ .+|+++++++..+|..+
T Consensus        92 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~  129 (251)
T 3dkr_A           92 YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILP  129 (251)
T ss_dssp             CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCT
T ss_pred             cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhh
Confidence            57999999999999999999 78999999999998876

>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A*

Probab=99.22  E-value=4.4e-12  Score=138.39  Aligned_cols=127  Identities=20%  Similarity=0.248  Sum_probs=89.9

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-CCHHhHHHH-cCceEEEEECCC-CCCCCchhHHHhhccCCc
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWT-SRGWAFVDVNYG-GSTGYGREFRERLLGRWG  551 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-~~~~~~~~a-~~G~~v~~~d~r-Gs~~~g~~~~~~~~~~~g  551 (623)
                      +...+|.|....    .++++|+||++|||+....... +..  ..|+ ++|++|+.+||| |..|++........   +
T Consensus        99 l~lnv~~P~~~~----~~~~~Pv~v~iHGG~~~~g~~~~~~~--~~la~~~g~vvv~~nYRlg~~gf~~~~~~~~~---~  169 (542)
T 2h7c_A           99 LYLNIYTPADLT----KKNRLPVMVWIHGGGLMVGAASTYDG--LALAAHENVVVVTIQYRLGIWGFFSTGDEHSR---G  169 (542)
T ss_dssp             CEEEEEECSCTT----SCCCEEEEEEECCSTTTSCCSTTSCC--HHHHHHHTCEEEEECCCCHHHHHCCCSSTTCC---C
T ss_pred             cEEEEEECCCCC----CCCCCCEEEEECCCcccCCCccccCH--HHHHhcCCEEEEecCCCCccccCCCCCcccCc---c
Confidence            556678887521    1467899999999975433332 322  2355 479999999999 43333222111122   3


Q ss_pred             cchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHh-c--CCCceeEEEecccCCCH
Q 006979          552 IVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAAL-A--FRDTFKAGASLYGVSIP  610 (623)
Q Consensus       552 ~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~-~--~~~~f~a~v~~~g~~d~  610 (623)
                      .....|+.++++|+.++   -..|++||.|+|+|+||++++.++ .  .+.+|+++|+.+|..+.
T Consensus       170 n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~~  234 (542)
T 2h7c_A          170 NWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVALT  234 (542)
T ss_dssp             CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTC
T ss_pred             chhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCccC
Confidence            33478999999999875   237999999999999999999888 3  36799999999997653

>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L}

Probab=99.21  E-value=1.8e-10  Score=113.51  Aligned_cols=126  Identities=11%  Similarity=-0.021  Sum_probs=92.0

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~  541 (623)
                      ++..+..  +|..++...+.|.+          .|.||++||.+..  ...|...+..|+++||.|+.+|+||.|.....
T Consensus         5 ~~~~~~~--~g~~l~~~~~g~~~----------~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~   70 (286)
T 3qit_A            5 EEKFLEF--GGNQICLCSWGSPE----------HPVVLCIHGILEQ--GLAWQEVALPLAAQGYRVVAPDLFGHGRSSHL   70 (286)
T ss_dssp             EEEEEEE--TTEEEEEEEESCTT----------SCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC
T ss_pred             hhheeec--CCceEEEeecCCCC----------CCEEEEECCCCcc--cchHHHHHHHhhhcCeEEEEECCCCCCCCCCC
Confidence            3444544  68889988775532          4789999999543  34567788999999999999999997654332


Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      .      .......++..+.+..++++  ++.+++.++|||+||++++.++ .+|++++++|...|...
T Consensus        71 ~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~  131 (286)
T 3qit_A           71 E------MVTSYSSLTFLAQIDRVIQE--LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLP  131 (286)
T ss_dssp             S------SGGGCSHHHHHHHHHHHHHH--SCSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCC
T ss_pred             C------CCCCcCHHHHHHHHHHHHHh--cCCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCC
Confidence            1      01223345555555555543  2347899999999999999999 88999999999998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.19  E-value=3.6e-09  Score=107.91  Aligned_cols=161  Identities=9%  Similarity=-0.013  Sum_probs=96.8

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++++...++.|+++|+.++ ...+.+...  . ......+.|+|||+++++.....        ..|+++|+++++.  
T Consensus        12 ~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~--~-~~~~~~~~~s~dg~~~~v~~~~~--------~~i~~~d~~t~~~--   77 (349)
T 1jmx_B           12 EYMIVTNYPNNLHVVDVASD-TVYKSCVMP--D-KFGPGTAMMAPDNRTAYVLNNHY--------GDIYGIDLDTCKN--   77 (349)
T ss_dssp             EEEEEEETTTEEEEEETTTT-EEEEEEECS--S-CCSSCEEEECTTSSEEEEEETTT--------TEEEEEETTTTEE--
T ss_pred             EEEEEeCCCCeEEEEECCCC-cEEEEEecC--C-CCCCceeEECCCCCEEEEEeCCC--------CcEEEEeCCCCcE--
Confidence            56677767888999999876 222333322  0 01245678999999777665322        5799999998762  


Q ss_pred             ceecccCC------CcccceeeCCCCCEEEEEEecC--CCCCC--CceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          236 PKVLVSGS------DFYAFPRMDPRGERMAWIEWHH--PNMPW--DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       236 ~~~l~~~~------~~~~~p~wSPDG~~la~~~~~~--~~~p~--~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      ...+..+.      .......|||||++|++...+.  ....+  ....|+++|+.++........... .    ..+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~----~~~~~  152 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-P----RQVYL  152 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-C----SSCCC
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-C----Ccccc
Confidence            22232111      1245678999999998876330  00000  124699999987532112222222 2    23556


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEe
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~  341 (623)
                      ..|+|||+ +|+...     .|+++|+.+++.....
T Consensus       153 ~~~s~dg~-l~~~~~-----~i~~~d~~~~~~~~~~  182 (349)
T 1jmx_B          153 MRAADDGS-LYVAGP-----DIYKMDVKTGKYTVAL  182 (349)
T ss_dssp             EEECTTSC-EEEESS-----SEEEECTTTCCEEEEE
T ss_pred             eeECCCCc-EEEccC-----cEEEEeCCCCceeccc
Confidence            77999999 444432     2889999887755443

>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0

Probab=99.19  E-value=2.1e-11  Score=115.84  Aligned_cols=114  Identities=11%  Similarity=0.037  Sum_probs=79.1

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHH-----h-hccC----CccchHHHHHHH
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE-----R-LLGR----WGIVDVNDCCSC  561 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~-----~-~~~~----~g~~~~~D~~~~  561 (623)
                      +++.| ||++||..  .....+...++.++ .||.|+.+|.++..+.+..|..     . ..+.    ......+++.+.
T Consensus        14 ~~~~p-vv~lHG~g--~~~~~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~   89 (209)
T 3og9_A           14 KDLAP-LLLLHSTG--GDEHQLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTDE   89 (209)
T ss_dssp             TTSCC-EEEECCTT--CCTTTTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHHHHHHHHHHH
T ss_pred             CCCCC-EEEEeCCC--CCHHHHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHHHHHHHHHHH
Confidence            45578 99999984  34445667777777 7999999995532211111111     0 0000    011235566677


Q ss_pred             HHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          562 ATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       562 ~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ++.+.++..+|++||+|+|+|+||++++.++ .+|++++++|+.+|...
T Consensus        90 ~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~  138 (209)
T 3og9_A           90 VSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQL  138 (209)
T ss_dssp             HHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCC
T ss_pred             HHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCC
Confidence            7777666668999999999999999999988 88999999999998754

>3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina}

Probab=99.19  E-value=7.4e-11  Score=118.92  Aligned_cols=116  Identities=19%  Similarity=0.159  Sum_probs=91.1

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECC--------CCCCCCchhHHH
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY--------GGSTGYGREFRE  544 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~--------rGs~~~g~~~~~  544 (623)
                      ..+...+|.|.+.      .++.|+||.+||+..             ...+||+|+.+|+        ||+.|+|.-|.-
T Consensus        90 ~~~~~~i~lP~~~------~~p~Pvii~i~~~~~-------------~~~~G~a~~~~~~~~v~~~~~~gs~g~g~f~~l  150 (375)
T 3pic_A           90 ISFTVTITYPSSG------TAPYPAIIGYGGGSL-------------PAPAGVAMINFNNDNIAAQVNTGSRGQGKFYDL  150 (375)
T ss_dssp             EEEEEEEECCSSS------CSSEEEEEEETTCSS-------------CCCTTCEEEEECHHHHSCCSSGGGTTCSHHHHH
T ss_pred             eEEEEEEECCCCC------CCCccEEEEECCCcc-------------ccCCCeEEEEecccccccccCCCCccceecccc
Confidence            3477889999762      467899999998511             1468999999997        677778874321


Q ss_pred             -hhccCCccchH--HHHHHHHHHHHhCC--CCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccC
Q 006979          545 -RLLGRWGIVDV--NDCCSCATFLVGSG--KADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGV  607 (623)
Q Consensus       545 -~~~~~~g~~~~--~D~~~~~~~l~~~~--~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~  607 (623)
                       .....||....  =|+..+++||..++  .||++||+|+|+|+||..+++++...++|+++|+..+.
T Consensus       151 y~~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D~Ri~~~v~~~~g  218 (375)
T 3pic_A          151 YGSSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFEKRIVLTLPQESG  218 (375)
T ss_dssp             HCTTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHCTTEEEEEEESCC
T ss_pred             cCCccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcCCceEEEEeccCC
Confidence             11235666544  38999999999998  99999999999999999999999777799999998754

>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23

Probab=99.18  E-value=3.7e-11  Score=113.71  Aligned_cols=122  Identities=13%  Similarity=0.064  Sum_probs=88.2

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH--HhHHHHcCceEEEEECCCCCCCCchhHHHhhcc
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG  548 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~--~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~  548 (623)
                      +|..++++.+.|.+       +++.|+||++||++...  ..+..  .+..|+++||.|+.+|+||.|.....   ....
T Consensus        15 ~g~~l~~~~~~p~~-------~~~~~~vv~~hG~~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~---~~~~   82 (210)
T 1imj_A           15 QGQALFFREALPGS-------GQARFSVLLLHGIRFSS--ETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEA---AAPA   82 (210)
T ss_dssp             TTEEECEEEEECSS-------SCCSCEEEECCCTTCCH--HHHHHHTHHHHHHHTTCEEEEECCTTSGGGTTS---CCSS
T ss_pred             CCeEEEEEEeCCCC-------CCCCceEEEECCCCCcc--ceeecchhHHHHHHCCCeEEEecCCCCCCCCCC---CCcc
Confidence            68899999998865       45679999999985332  34444  47889999999999999985432221   1111


Q ss_pred             CCccc-hHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          549 RWGIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       549 ~~g~~-~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      .+... ..+|+...++++      +.++++++|+|+||++++.++ .+|+.++++|..+|....
T Consensus        83 ~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~  140 (210)
T 1imj_A           83 PIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTD  140 (210)
T ss_dssp             CTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGG
T ss_pred             hhhhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCccc
Confidence            11111 125666666665      246899999999999999888 789999999999998643

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=99.17  E-value=1.8e-11  Score=128.71  Aligned_cols=139  Identities=17%  Similarity=0.092  Sum_probs=96.1

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceE----EEEECCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWA----FVDVNYGG  534 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~----v~~~d~rG  534 (623)
                      .+.+.+.+.+...|..+..++|.|.+  +.   .+++|+|+++||+.+... ..+....+.|+++|++    |+.+|++|
T Consensus       166 G~v~~~~~~S~~~g~~~~~~vy~P~~--~~---~~~~PvlvllHG~~~~~~-~~~~~~~~~l~~~g~~~p~iVV~~d~~~  239 (403)
T 3c8d_A          166 IPAKEIIWKSERLKNSRRVWIFTTGD--VT---AEERPLAVLLDGEFWAQS-MPVWPVLTSLTHRQQLPPAVYVLIDAID  239 (403)
T ss_dssp             SCCEEEEEEETTTTEEEEEEEEEC----------CCCCEEEESSHHHHHHT-SCCHHHHHHHHHTTSSCSCEEEEECCCS
T ss_pred             CceEEEEEEccccCCcEEEEEEeCCC--CC---CCCCCEEEEeCCHHHhhc-CcHHHHHHHHHHcCCCCCeEEEEECCCC
Confidence            35667888775467889999999976  31   467999999999633211 1233467788888875    99999986


Q ss_pred             CCCCchhHHHhhccCCccchHHHH--HHHHHHHHhCC--CCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          535 STGYGREFRERLLGRWGIVDVNDC--CSCATFLVGSG--KADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       535 s~~~g~~~~~~~~~~~g~~~~~D~--~~~~~~l~~~~--~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ..+     +....  .+...+.|.  .+++.++.++.  ..|++|++|+|+||||++++.++ .+|++|+++++.+|..+
T Consensus       240 ~~~-----r~~~~--~~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~  312 (403)
T 3c8d_A          240 TTH-----RAHEL--PCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYW  312 (403)
T ss_dssp             HHH-----HHHHS--SSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTT
T ss_pred             Ccc-----ccccC--CChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccc
Confidence            211     11101  111233443  35677776642  36899999999999999999999 89999999999999875


Q ss_pred             H
Q 006979          610 P  610 (623)
Q Consensus       610 ~  610 (623)
                      +
T Consensus       313 ~  313 (403)
T 3c8d_A          313 W  313 (403)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14

Probab=99.17  E-value=6e-11  Score=114.06  Aligned_cols=113  Identities=12%  Similarity=-0.029  Sum_probs=81.8

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEE-------------------CCCCCCCCchhHHHhhccCCcc
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV-------------------NYGGSTGYGREFRERLLGRWGI  552 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~-------------------d~rGs~~~g~~~~~~~~~~~g~  552 (623)
                      +++.|+||++||.+..  ...+......|+++||.|+.+                   |+||..........     .-.
T Consensus        20 ~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~~~~~~~-----~~~   92 (232)
T 1fj2_A           20 RKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDES-----GIK   92 (232)
T ss_dssp             SCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHH-----HHH
T ss_pred             CCCCceEEEEecCCCc--cchHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccCCcccccccH-----HHH
Confidence            4567999999998533  334556677788889999998                   55553111000000     011


Q ss_pred             chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979          553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       553 ~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                      ...+|+.++++++.+ ..+|+++|+++|+|+||++++.++ .+|+.++++|+.+|..+...
T Consensus        93 ~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~  152 (232)
T 1fj2_A           93 QAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRA  152 (232)
T ss_dssp             HHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGG
T ss_pred             HHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCc
Confidence            235677778888877 457889999999999999999999 78999999999999887654

>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14

Probab=99.17  E-value=2.4e-11  Score=116.55  Aligned_cols=128  Identities=12%  Similarity=0.003  Sum_probs=88.4

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhc-cC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL-GR  549 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~-~~  549 (623)
                      ++..++..++.|..        ...|+||++||.+.  ....+......|++ ||.|+.+|.++..+.|..|..... +.
T Consensus        14 ~~~~l~~~~~~~~~--------~~~p~vv~lHG~g~--~~~~~~~~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~~~   82 (223)
T 3b5e_A           14 TDLAFPYRLLGAGK--------ESRECLFLLHGSGV--DETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTR   82 (223)
T ss_dssp             CSSSSCEEEESTTS--------SCCCEEEEECCTTB--CTTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTE
T ss_pred             cCCCceEEEeCCCC--------CCCCEEEEEecCCC--CHHHHHHHHHhcCC-CceEEEeCCCCCcCCccccccccCCCc
Confidence            34556666666643        22389999999843  33456667777765 999999998763221222211000 00


Q ss_pred             ----CccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          550 ----WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       550 ----~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                          .-....+|+.+.++++.++..+|++||+|+|+|+||++++.++ .+|++++++|+.+|..+
T Consensus        83 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~  147 (223)
T 3b5e_A           83 FEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPV  147 (223)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccC
Confidence                0012356777778887776457899999999999999999998 88999999999999764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.17  E-value=7.7e-09  Score=106.67  Aligned_cols=257  Identities=12%  Similarity=0.075  Sum_probs=132.1

Q ss_pred             ceEEEeCC--EEEEEeCC---CCcE--EEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCce
Q 006979          148 GAFRIFGD--TVIFSNYK---DQRL--YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST  220 (623)
Q Consensus       148 ~~~~~s~d--~l~f~~~~---~~~l--~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~  220 (623)
                      ...++++|  .|++....   ++.|  |.++.+++  ..+++..... .........+  ||++|++.....        
T Consensus        53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g--~~~~~~~~~~-~~~~p~~~~~--dg~~l~~~~~~~--------  119 (361)
T 3scy_A           53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG--TLHLLNTQKT-MGADPCYLTT--NGKNIVTANYSG--------  119 (361)
T ss_dssp             CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT--EEEEEEEEEC-SSSCEEEEEE--CSSEEEEEETTT--------
T ss_pred             ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC--cEEEeeEecc-CCCCcEEEEE--CCCEEEEEECCC--------
Confidence            34566655  56666552   3556  45555444  4444432100 0111222334  888877654322        


Q ss_pred             eEEEEEEcCC-CCcccceec-c-cCCC---------cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc---
Q 006979          221 TEIVAIALNG-QNIQEPKVL-V-SGSD---------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD---  285 (623)
Q Consensus       221 ~~L~~idl~~-g~~~~~~~l-~-~~~~---------~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~---  285 (623)
                      ..+.+++++. +........ . .+..         ......|||||++|++....       ...|++++++..+.   
T Consensus       120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-------~~~v~v~~~~~~~~~~~  192 (361)
T 3scy_A          120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-------TDQIHKFNINPNANADN  192 (361)
T ss_dssp             TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-------TTEEEEEEECTTCCTTT
T ss_pred             CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-------CCEEEEEEEcCCCCccc
Confidence            4577778764 321111111 1 1111         11346899999999877532       23577777765431   


Q ss_pred             ---eee----eEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcc
Q 006979          286 ---VYK----RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINS  358 (623)
Q Consensus       286 ---~~~----~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~  358 (623)
                         +..    ........    ..+..+.|+|||+.+|+.+...+  .|.+++.++++.+.+..........   .+...
T Consensus       193 ~~~l~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~--~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~  263 (361)
T 3scy_A          193 KEKFLTKGTPEAFKVAPG----SGPRHLIFNSDGKFAYLINEIGG--TVIAFRYADGMLDEIQTVAADTVNA---QGSGD  263 (361)
T ss_dssp             CCCCEEEEEEEEEECCTT----CCEEEEEECTTSSEEEEEETTTC--EEEEEEEETTEEEEEEEEESCSSCC---CCEEE
T ss_pred             ccceeecccccceecCCC----CCCeEEEEcCCCCEEEEEcCCCC--eEEEEEecCCceEEeEEEecCCCCC---CCccc
Confidence               111    12222222    34557899999995555554234  4566666677665544211110100   01122


Q ss_pred             eeEEeecCCCCEEEEEEEE-CCeEEEEEEeCCCCceeecccC--CcceEe--eeecCCEEEEEEecCCCCCeEEEEEcCC
Q 006979          359 YEIIQSHGEKNLIACSYRQ-NGRSYLGILDDFGHSLSLLDIP--FTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDD  433 (623)
Q Consensus       359 ~~~l~~s~~~~~l~~~~~~-~g~~~L~~~d~~~~~~~~lt~~--~~~v~~--~~~~~~~~~~~~~s~~~~~~ly~~~l~~  433 (623)
                      +.+   +|+++.||++... ++.-.+|.++..+++++.+..-  ......  ++++++++++... ....-.+|.+++++
T Consensus       264 i~~---spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~-~~~~v~v~~~d~~~  339 (361)
T 3scy_A          264 IHL---SPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR-DTNVIQIFERDQAT  339 (361)
T ss_dssp             EEE---CTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET-TTTEEEEEEECTTT
T ss_pred             EEE---CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC-CCCCEEEEEEECCC
Confidence            333   3488888776655 5677788787667776544321  112222  3777777766543 33334577788878


Q ss_pred             Ccce
Q 006979          434 HKLK  437 (623)
Q Consensus       434 ~~~~  437 (623)
                      ++++
T Consensus       340 g~~~  343 (361)
T 3scy_A          340 GLLT  343 (361)
T ss_dssp             CCEE
T ss_pred             CcEe
Confidence            8753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.16  E-value=1.4e-09  Score=109.88  Aligned_cols=255  Identities=10%  Similarity=0.004  Sum_probs=146.0

Q ss_pred             HHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC-CCCCccceeeeecCCceEEEeCC-EE
Q 006979           81 ADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGGGAFRIFGD-TV  157 (623)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~-p~~~~~r~~~~~~g~~~~~~s~d-~l  157 (623)
                      ++.+.......+++.|+| ++.+||++...   ++  |++++..  ++.+.+. +..          ......++++ .+
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~---~~--i~~~~~~--g~~~~~~~~~~----------~~~gl~~d~dG~l   99 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVG---RR--VLGWRED--GTVDVLLDATA----------FTNGNAVDAQQRL   99 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTT---TE--EEEEETT--SCEEEEEESCS----------CEEEEEECTTSCE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCC---CE--EEEEeCC--CCEEEEeCCCC----------ccceeeECCCCCE
Confidence            444555555567899999 77899998653   43  5666553  2322221 111          0123445544 56


Q ss_pred             EEEeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEe------cc---CCCCCCceeEEEEEE
Q 006979          158 IFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVRE------DR---RQDALNSTTEIVAIA  227 (623)
Q Consensus       158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~------~~---~~~~~~~~~~L~~id  227 (623)
                      ++.....+.|++++.+ +  ..+.+... .+......++..++|||+.+ ++..      +.   ..........||++|
T Consensus       100 ~v~~~~~~~v~~~~~~-g--~~~~~~~~~~~~~~~~~~~i~~d~dG~l~-~td~~~g~~~~~~~~~~~~~~~~~~v~~~d  175 (305)
T 3dr2_A          100 VHCEHGRRAITRSDAD-G--QAHLLVGRYAGKRLNSPNDLIVARDGAIW-FTDPPFGLRKPSQGCPADPELAHHSVYRLP  175 (305)
T ss_dssp             EEEETTTTEEEEECTT-S--CEEEEECEETTEECSCCCCEEECTTSCEE-EECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred             EEEECCCCEEEEECCC-C--CEEEEEeccCCCccCCCCCEEECCCCCEE-EeCcCCCccccccccccccccCCCeEEEEc
Confidence            6665555679999986 5  45555432 11111235678999999743 3210      00   000011237899999


Q ss_pred             cCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (623)
Q Consensus       228 l~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
                      .++++   .+.+. +.......+|||||++|++......  +.....|+++++++++ +...+.+.... .  ..+..+.
T Consensus       176 ~~~g~---~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~--~~~~~~i~~~~~~~~~-l~~~~~~~~~~-~--~~pdgi~  245 (305)
T 3dr2_A          176 PDGSP---LQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQ--GHGSVEITAFAWRDGA-LHDRRHFASVP-D--GLPDGFC  245 (305)
T ss_dssp             SSSCC---CEEEE-EESSEEEEEECTTSSEEEEEECCC-----CCCEEEEEEEETTE-EEEEEEEECCS-S--SCCCSEE
T ss_pred             CCCCc---EEEEe-cCCCCcceEEcCCCCEEEEEecCCc--CCCCCEEEEEEecCCC-ccCCeEEEECC-C--CCCCeEE
Confidence            98887   55555 4444566789999999988764321  0012569999998664 33344443322 1  4556889


Q ss_pred             eCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       308 ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                      +++||+++ ++.. .   .|+++++++.....+.... ...         .+.|-   ++++.|++++.    ..||+++
T Consensus       246 ~d~~G~lw-v~~~-~---gv~~~~~~g~~~~~~~~~~-~~~---------~~~f~---~d~~~L~it~~----~~l~~~~  303 (305)
T 3dr2_A          246 VDRGGWLW-SSSG-T---GVCVFDSDGQLLGHIPTPG-TAS---------NCTFD---QAQQRLFITGG----PCLWMLP  303 (305)
T ss_dssp             ECTTSCEE-ECCS-S---EEEEECTTSCEEEEEECSS-CCC---------EEEEC---TTSCEEEEEET----TEEEEEE
T ss_pred             ECCCCCEE-EecC-C---cEEEECCCCCEEEEEECCC-cee---------EEEEe---CCCCEEEEEcC----CeEEEEE
Confidence            99999854 4443 2   3899999665555554321 122         22222   27777887763    2577776


Q ss_pred             C
Q 006979          388 D  388 (623)
Q Consensus       388 ~  388 (623)
                      +
T Consensus       304 ~  304 (305)
T 3dr2_A          304 L  304 (305)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A*

Probab=99.15  E-value=8.8e-11  Score=119.58  Aligned_cols=114  Identities=21%  Similarity=0.167  Sum_probs=90.5

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECC--------CCCCCCchhHHHh
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY--------GGSTGYGREFRER  545 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~--------rGs~~~g~~~~~~  545 (623)
                      .+.+.+|.|++       .++.|+||.+||+.       +      ...+||+++.+|+        +|+.|+|. |.+.
T Consensus       124 sf~~~i~lP~g-------~~P~Pvii~~~~~~-------~------~~~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~l  182 (433)
T 4g4g_A          124 SFSASIRKPSG-------AGPFPAIIGIGGAS-------I------PIPSNVATITFNNDEFGAQMGSGSRGQGK-FYDL  182 (433)
T ss_dssp             EEEEEEECCSS-------SCCEEEEEEESCCC-------S------CCCTTSEEEEECHHHHSCCSSGGGTTCSH-HHHH
T ss_pred             EEEEEEECCCC-------CCCccEEEEECCCc-------c------ccCCCeEEEEeCCcccccccCCCcCCccc-cccc
Confidence            35889999976       57789999999751       1      1568999999997        56667887 4432


Q ss_pred             h--ccCCccchH--HHHHHHHHHHHh----CCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCC
Q 006979          546 L--LGRWGIVDV--NDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVS  608 (623)
Q Consensus       546 ~--~~~~g~~~~--~D~~~~~~~l~~----~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~  608 (623)
                      .  ...||....  =|+..+++||..    ++.||++||+|+|+|+||..+++++...++|+++|+..+.+
T Consensus       183 y~~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D~Ri~~vi~~~sg~  253 (433)
T 4g4g_A          183 FGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALVDRIALTIPQESGA  253 (433)
T ss_dssp             HCTTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHCTTCSEEEEESCCT
T ss_pred             cCCccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcCCceEEEEEecCCC
Confidence            2  235665433  389999999999    88999999999999999999999997777999999997643

>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV}

Probab=99.13  E-value=7.8e-11  Score=108.19  Aligned_cols=108  Identities=8%  Similarity=-0.038  Sum_probs=78.6

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD  572 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d  572 (623)
                      ++.|+||++||.........+....+.|+++||.|+.+|+||.|.....       .......+++.++++++.+..  +
T Consensus         2 ~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~-------~~~~~~~~~~~~~~~~~~~~~--~   72 (176)
T 2qjw_A            2 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDL-------GQLGDVRGRLQRLLEIARAAT--E   72 (176)
T ss_dssp             CSSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCCHHHHTCGGG-------CTTCCHHHHHHHHHHHHHHHH--T
T ss_pred             CCCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHhcC--C
Confidence            4568999999986443322344678889999999999999985443211       111122455566677777653  4


Q ss_pred             CCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      .++++++|+|+||++++.++ .+|  ++++|..+|..+..
T Consensus        73 ~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~  110 (176)
T 2qjw_A           73 KGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMG  110 (176)
T ss_dssp             TSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBT
T ss_pred             CCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcc
Confidence            57999999999999999999 667  99999999987754

>2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A*

Probab=99.13  E-value=8.2e-11  Score=117.33  Aligned_cols=147  Identities=14%  Similarity=0.087  Sum_probs=95.3

Q ss_pred             CCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHc-CceEEEEECCCCC
Q 006979          457 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGS  535 (623)
Q Consensus       457 ~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~-~G~~v~~~d~rGs  535 (623)
                      .+...+.+.+.+...+..+..++|.|.+  |++  .+++|+|++.||+....  .......+.+++ .+.+|+.+++++.
T Consensus         9 ~~~~~~~~~~~S~~~~~~~~~~vylP~~--y~~--~~~yPvly~l~G~~~~~--~~~~~~~~~l~~~~~~ivV~v~~~~~   82 (278)
T 2gzs_A            9 VFYHFSATSFDSVDGTRHYRVWTAVPNT--TAP--ASGYPILYMLDGNAVMD--RLDDELLKQLSEKTPPVIVAVGYQTN   82 (278)
T ss_dssp             SSEEEEEEEEECTTSSCEEEEEEEEESS--CCC--TTCEEEEEESSHHHHHH--HCCHHHHHHHTTSCCCEEEEEEESSS
T ss_pred             CCCceEEEEEEcCCCCceEEEEEECCCC--CCC--CCCCCEEEEeeChhHHH--HHHHHHHHHhccCCCeEEEEEcCCCC
Confidence            3456777888876236789999999987  544  57899987777763211  111223455655 6888888998764


Q ss_pred             CCCc-----hhHHHhh-c-----------cCCcc-chHHHHH--HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC
Q 006979          536 TGYG-----REFRERL-L-----------GRWGI-VDVNDCC--SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF  594 (623)
Q Consensus       536 ~~~g-----~~~~~~~-~-----------~~~g~-~~~~D~~--~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~  594 (623)
                      ..+.     .+|.... .           ...+. ..+.+.+  ..+.++.++..+|++|++|+|+||||++++.++ . 
T Consensus        83 ~~~~~~~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-  161 (278)
T 2gzs_A           83 LPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-  161 (278)
T ss_dssp             SSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-
T ss_pred             CcCcccccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-
Confidence            3221     1121111 0           00111 1222222  234455566668999999999999999999999 8 


Q ss_pred             CCceeEEEecccCCCH
Q 006979          595 RDTFKAGASLYGVSIP  610 (623)
Q Consensus       595 ~~~f~a~v~~~g~~d~  610 (623)
                      |++|+++++.+|...+
T Consensus       162 p~~f~~~~~~s~~~~~  177 (278)
T 2gzs_A          162 SSYFRSYYSASPSLGR  177 (278)
T ss_dssp             CSSCSEEEEESGGGST
T ss_pred             ccccCeEEEeCcchhc
Confidence            9999999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.13  E-value=2.2e-08  Score=101.23  Aligned_cols=267  Identities=8%  Similarity=0.031  Sum_probs=151.3

Q ss_pred             cCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCC
Q 006979           87 ASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKD  164 (623)
Q Consensus        87 ~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~  164 (623)
                      ....+..+.|+| +..++...     +|...+|.....  .....+....    ..-+...+.+..++++ ..+++...+
T Consensus        50 h~~~v~~~~~~~~~~~l~~~~-----dg~i~iw~~~~~--~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d  118 (337)
T 1gxr_A           50 HGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISHP--GNKSPVSQLD----CLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             CSSCCCEEEECSSSSEEEEEC-----BSEEEEEETTST--TCCSCSEEEE----CSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             CCCceEEEEEecCCcEEEEcC-----CCeEEEEECCCC--Cceeeeeccc----ccCCCCcEEEEEEcCCCCEEEEEcCC
Confidence            345567889998 55444332     377777766543  1111111000    0001112345566655 445555567


Q ss_pred             CcEEEEeCCCCCCCc---eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc
Q 006979          165 QRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS  241 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~---~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~  241 (623)
                      +.|.++|+.++  ..   ..+...    ........|+|+++.++....+         ..+.++|+.+++.  ...+..
T Consensus       119 ~~i~~~d~~~~--~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~--~~~~~~  181 (337)
T 1gxr_A          119 STLSIWDLAAP--TPRIKAELTSS----APACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTL--VRQFQG  181 (337)
T ss_dssp             SEEEEEECCCC----EEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEE--EEEECC
T ss_pred             CcEEEEECCCC--CcceeeecccC----CCceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCce--eeeeec
Confidence            88999999876  32   222221    2345678899999988876543         4588999988762  333443


Q ss_pred             CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCC
Q 006979          242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK  321 (623)
Q Consensus       242 ~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~  321 (623)
                      .........|+|||++|+....+        ..|+++|+..+.   ....+. ..    ..+..+.|+|||+++++... 
T Consensus       182 ~~~~i~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~---~~~~~~-~~----~~v~~~~~s~~~~~l~~~~~-  244 (337)
T 1gxr_A          182 HTDGASCIDISNDGTKLWTGGLD--------NTVRSWDLREGR---QLQQHD-FT----SQIFSLGYCPTGEWLAVGME-  244 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT--------SEEEEEETTTTE---EEEEEE-CS----SCEEEEEECTTSSEEEEEET-
T ss_pred             ccCceEEEEECCCCCEEEEEecC--------CcEEEEECCCCc---eEeeec-CC----CceEEEEECCCCCEEEEEcC-
Confidence            34455668899999988876532        358899988763   222222 22    35668899999995555544 


Q ss_pred             CCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCc
Q 006979          322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT  401 (623)
Q Consensus       322 ~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~  401 (623)
                      ++  .|..+|..+++...+......+....|.+            +++.++ +...+|.  |.++|+.+++.........
T Consensus       245 ~~--~i~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~l~-~~~~dg~--i~~~~~~~~~~~~~~~~~~  307 (337)
T 1gxr_A          245 SS--NVEVLHVNKPDKYQLHLHESCVLSLKFAY------------CGKWFV-STGKDNL--LNAWRTPYGASIFQSKESS  307 (337)
T ss_dssp             TS--CEEEEETTSSCEEEECCCSSCEEEEEECT------------TSSEEE-EEETTSE--EEEEETTTCCEEEEEECSS
T ss_pred             CC--cEEEEECCCCCeEEEcCCccceeEEEECC------------CCCEEE-EecCCCc--EEEEECCCCeEEEEecCCC
Confidence            34  46667777776655544333333333432            666554 4445564  5556777666543333333


Q ss_pred             ceEee--eecCCEEEE
Q 006979          402 DIDNI--TLGNDCLFV  415 (623)
Q Consensus       402 ~v~~~--~~~~~~~~~  415 (623)
                      .+..+  +++++.++.
T Consensus       308 ~v~~~~~s~~~~~l~~  323 (337)
T 1gxr_A          308 SVLSCDISVDDKYIVT  323 (337)
T ss_dssp             CEEEEEECTTSCEEEE
T ss_pred             cEEEEEECCCCCEEEE
Confidence            44444  555554443

>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...

Probab=99.12  E-value=2.1e-11  Score=133.09  Aligned_cols=127  Identities=19%  Similarity=0.194  Sum_probs=87.4

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-CHHhHHHHc-CceEEEEECCC-CCCCCchhHHHhhccCCc
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYG-GSTGYGREFRERLLGRWG  551 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-~~~~~~~a~-~G~~v~~~d~r-Gs~~~g~~~~~~~~~~~g  551 (623)
                      +...+|.|+...     ++++|+||++|||+........ ......|++ +|++|+.+||| |.-||+...  ......+
T Consensus        97 l~l~v~~P~~~~-----~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~--~~~~~~~  169 (543)
T 2ha2_A           97 LYLNVWTPYPRP-----ASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALP--GSREAPG  169 (543)
T ss_dssp             CEEEEEEESSCC-----SSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCSSCCS
T ss_pred             CeEEEeecCCCC-----CCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEecccccccccccCC--CCCCCCC
Confidence            445566676421     4568999999999743333221 233456765 79999999999 322222210  0011223


Q ss_pred             cchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCC
Q 006979          552 IVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVS  608 (623)
Q Consensus       552 ~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~  608 (623)
                      ...+.|+.+|++|+.++.   ..|++||.|+|+|+||++++.++..   +.+|+++|+.+|..
T Consensus       170 n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~  232 (543)
T 2ha2_A          170 NVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP  232 (543)
T ss_dssp             CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence            345899999999998752   2799999999999999999888733   57899999999953

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.12  E-value=3e-08  Score=100.31  Aligned_cols=243  Identities=8%  Similarity=-0.013  Sum_probs=145.1

Q ss_pred             CCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       146 g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      .+.+..++++ .+++... ++.|.++++.++ .....+... ............|+|+|+.|+....+         ..|
T Consensus        53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i  121 (337)
T 1gxr_A           53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHP-GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA---------STL  121 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-BSEEEEEETTST-TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---------SEE
T ss_pred             ceEEEEEecCCcEEEEcC-CCeEEEEECCCC-CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC---------CcE
Confidence            3556666666 4444444 788999999765 112222110 00113456678899999988876543         568


Q ss_pred             EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      .++|+.+++......+...........|+|||+.|+....+.        .|+++|+.++.   ....+....    ..+
T Consensus       122 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~v~~~d~~~~~---~~~~~~~~~----~~i  186 (337)
T 1gxr_A          122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG--------NIAVWDLHNQT---LVRQFQGHT----DGA  186 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTTE---EEEEECCCS----SCE
T ss_pred             EEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC--------cEEEEeCCCCc---eeeeeeccc----Cce
Confidence            889998775211223333344456678999999888765332        38888988762   333444433    456


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      ....|+|||++++.... ++  .|..+|+.+++..........+....|.            |+++.++... .++.  |
T Consensus       187 ~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~v~~~~~s------------~~~~~l~~~~-~~~~--i  248 (337)
T 1gxr_A          187 SCIDISNDGTKLWTGGL-DN--TVRSWDLREGRQLQQHDFTSQIFSLGYC------------PTGEWLAVGM-ESSN--V  248 (337)
T ss_dssp             EEEEECTTSSEEEEEET-TS--EEEEEETTTTEEEEEEECSSCEEEEEEC------------TTSSEEEEEE-TTSC--E
T ss_pred             EEEEECCCCCEEEEEec-CC--cEEEEECCCCceEeeecCCCceEEEEEC------------CCCCEEEEEc-CCCc--E
Confidence            78899999985555544 34  4667788777654444332233333333            2666666544 3443  6


Q ss_pred             EEEeCCCCceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          384 GILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       384 ~~~d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      +++|+.+++...+......+..+  +++++.++ ++..   ...+..+++.+++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~---dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV-STGK---DNLLNAWRTPYGAS  299 (337)
T ss_dssp             EEEETTSSCEEEECCCSSCEEEEEECTTSSEEE-EEET---TSEEEEEETTTCCE
T ss_pred             EEEECCCCCeEEEcCCccceeEEEECCCCCEEE-EecC---CCcEEEEECCCCeE
Confidence            66788877776665555556555  55666554 3332   24678888877653

>1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A*

Probab=99.12  E-value=3.1e-10  Score=113.20  Aligned_cols=141  Identities=15%  Similarity=0.144  Sum_probs=87.9

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH---HhHHHHcCceEEEEECCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~---~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      +.+.+++.+...+.++..++ .| .       .  .|+||++||.+.......|..   ..++++++||+|+.+|.+|++
T Consensus         5 ~~~~~~~~s~~~~~~~~v~~-~p-~-------~--~~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~   73 (280)
T 1dqz_A            5 PVEYLQVPSASMGRDIKVQF-QG-G-------G--PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSS   73 (280)
T ss_dssp             CEEEEEEEETTTTEEEEEEE-EC-C-------S--SSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTC
T ss_pred             eEEEEEEECcccCceeEEEE-cC-C-------C--CCEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCc
Confidence            34566666653566777553 23 2       2  258999999853122222222   335678889999999998754


Q ss_pred             CCchhHHHhh-ccCCccchHHHH--HHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          537 GYGREFRERL-LGRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       537 ~~g~~~~~~~-~~~~g~~~~~D~--~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      .|........ .+.......++.  .+++.++.++-.++++|++|+|+||||++++.++ ++|++|+++|+.+|..++.
T Consensus        74 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~  152 (280)
T 1dqz_A           74 FYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPS  152 (280)
T ss_dssp             TTSBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTT
T ss_pred             cccCCCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCccccc
Confidence            4421000000 000011223332  2445555543346778999999999999999998 8999999999999988754

>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A

Probab=99.12  E-value=6.9e-11  Score=127.56  Aligned_cols=128  Identities=21%  Similarity=0.285  Sum_probs=90.1

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcCc-eEEEEECCC----CCCCCchhHHHhhcc
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRG-WAFVDVNYG----GSTGYGREFRERLLG  548 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G-~~v~~~d~r----Gs~~~g~~~~~~~~~  548 (623)
                      ++..+|.|..      .+++.|+||++|||+...... ........|+++| ++|+.+|||    |.+..+.... ....
T Consensus        85 l~l~v~~P~~------~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~-~~~~  157 (498)
T 2ogt_A           85 LYLNIWSPAA------DGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFG-EAYA  157 (498)
T ss_dssp             CEEEEEESCS------SSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTC-GGGT
T ss_pred             cEEEEEecCC------CCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhccCchhhcc-cccc
Confidence            4555667753      156789999999997433222 2223467788887 999999999    3222221100 0112


Q ss_pred             CCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCCC
Q 006979          549 RWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVSI  609 (623)
Q Consensus       549 ~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~d  609 (623)
                      ..+...+.|+.++++|+.++.   ..|++||.|+|+|+||++++.++..   ..+|+++|+.+|..+
T Consensus       158 ~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~  224 (498)
T 2ogt_A          158 QAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS  224 (498)
T ss_dssp             TGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence            234456899999999998752   2799999999999999999888732   568999999999876

>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14

Probab=99.12  E-value=2.3e-10  Score=109.74  Aligned_cols=114  Identities=17%  Similarity=0.081  Sum_probs=82.4

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEE--CCCCCCCCchhHHHhhccCCc----cchHHHHHHHHHHHH
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV--NYGGSTGYGREFRERLLGRWG----IVDVNDCCSCATFLV  566 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~--d~rGs~~~g~~~~~~~~~~~g----~~~~~D~~~~~~~l~  566 (623)
                      ++.|+||++||++.  ....+....+.|++ ||.|+.+  |++|.|.... +.....+.+.    ..+.+|+.+.++++.
T Consensus        36 ~~~~~vv~~HG~~~--~~~~~~~~~~~l~~-g~~v~~~~~d~~g~g~s~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  111 (226)
T 2h1i_A           36 TSKPVLLLLHGTGG--NELDLLPLAEIVDS-EASVLSVRGNVLENGMPRF-FRRLAEGIFDEEDLIFRTKELNEFLDEAA  111 (226)
T ss_dssp             TTSCEEEEECCTTC--CTTTTHHHHHHHHT-TSCEEEECCSEEETTEEES-SCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEecCCC--ChhHHHHHHHHhcc-CceEEEecCcccCCcchhh-ccccCccCcChhhHHHHHHHHHHHHHHHH
Confidence            46799999999953  34456677888888 9999999  7777553210 0000001111    123456667777777


Q ss_pred             hCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          567 GSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       567 ~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      ++..+|+++|+++|+|+||++++.++ .+|++++++|+.+|..+.
T Consensus       112 ~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~  156 (226)
T 2h1i_A          112 KEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPR  156 (226)
T ss_dssp             HHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSC
T ss_pred             hhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCc
Confidence            77667899999999999999999998 889999999999998764

>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17

Probab=99.11  E-value=6.3e-11  Score=128.52  Aligned_cols=131  Identities=20%  Similarity=0.177  Sum_probs=89.0

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHH-HcCceEEEEECCC-CCCCCchhHHHhhccCC
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYW-TSRGWAFVDVNYG-GSTGYGREFRERLLGRW  550 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~-a~~G~~v~~~d~r-Gs~~~g~~~~~~~~~~~  550 (623)
                      .+...+|.|.+..    .++++|+||++|||+...... .+....... .++|++|+.+||| |.-||+........+ .
T Consensus        85 cl~l~v~~P~~~~----~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~~~-~  159 (522)
T 1ukc_A           85 CLFINVFKPSTAT----SQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNG-D  159 (522)
T ss_dssp             CCEEEEEEETTCC----TTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSS-C
T ss_pred             CCEEEEEECCCCC----CCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhccccC-C
Confidence            3666778886521    146789999999997543322 233222111 2579999999999 332333321111111 2


Q ss_pred             ccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cC----CCceeEEEecccCCC
Q 006979          551 GIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AF----RDTFKAGASLYGVSI  609 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~----~~~f~a~v~~~g~~d  609 (623)
                      +...+.|+.+|++|+.++.   -.|++||.|+|+|+||++++.++ ..    ..+|+++|+.+|..+
T Consensus       160 ~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~  226 (522)
T 1ukc_A          160 LNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWP  226 (522)
T ss_dssp             TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCC
T ss_pred             CChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcC
Confidence            2345899999999998752   36999999999999999888776 43    579999999999754

>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A

Probab=99.11  E-value=4e-10  Score=111.68  Aligned_cols=118  Identities=15%  Similarity=0.257  Sum_probs=82.7

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHh
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER  545 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~  545 (623)
                      +... +|..++...+.|.+          .|.||++||.+.  ....|...+..|+++||.|+++|+||.|.+...    
T Consensus         4 ~~~~-~g~~l~y~~~g~~~----------~~~vvllHG~~~--~~~~w~~~~~~L~~~g~~vi~~D~~G~G~S~~~----   66 (276)
T 1zoi_A            4 VTTK-DGVQIFYKDWGPRD----------APVIHFHHGWPL--SADDWDAQLLFFLAHGYRVVAHDRRGHGRSSQV----   66 (276)
T ss_dssp             EECT-TSCEEEEEEESCTT----------SCEEEEECCTTC--CGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC----
T ss_pred             EECC-CCcEEEEEecCCCC----------CCeEEEECCCCc--chhHHHHHHHHHHhCCCEEEEecCCCCCCCCCC----
Confidence            3444 78888766554422          257999999853  334677788899999999999999997765431    


Q ss_pred             hccCCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC-CCceeEEEecccC
Q 006979          546 LLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF-RDTFKAGASLYGV  607 (623)
Q Consensus       546 ~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~-~~~f~a~v~~~g~  607 (623)
                       ...+.. ...+|+.+.++++      +.+++.++||||||.+++.++ .+ |++++++|...+.
T Consensus        67 -~~~~~~~~~~~d~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~  124 (276)
T 1zoi_A           67 -WDGHDMDHYADDVAAVVAHL------GIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAV  124 (276)
T ss_dssp             -SSCCSHHHHHHHHHHHHHHH------TCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCC
T ss_pred             -CCCCCHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCC
Confidence             111111 1245566666655      236899999999999998855 66 9999999988763

>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12

Probab=99.11  E-value=7.1e-10  Score=109.63  Aligned_cols=118  Identities=15%  Similarity=0.163  Sum_probs=82.0

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHh
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER  545 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~  545 (623)
                      +.+. +|..++...+.|.+          .|.||++||.+..  ...|...+..|+++||.|+++|+||.|.+...    
T Consensus         3 ~~~~-~g~~l~y~~~g~~~----------~~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~----   65 (275)
T 1a88_A            3 VTTS-DGTNIFYKDWGPRD----------GLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP----   65 (275)
T ss_dssp             EECT-TSCEEEEEEESCTT----------SCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC----
T ss_pred             EEcc-CCCEEEEEEcCCCC----------CceEEEECCCCCc--hhhHHHHHHHHHHCCceEEEEcCCcCCCCCCC----
Confidence            3444 78888766554422          2578999998533  34567778899999999999999997665331    


Q ss_pred             hccCCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC-CCceeEEEecccC
Q 006979          546 LLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF-RDTFKAGASLYGV  607 (623)
Q Consensus       546 ~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~-~~~f~a~v~~~g~  607 (623)
                       ...+.. ...+|+.+.++++.      .+++.++||||||.+++.++ .+ |++++++|...+.
T Consensus        66 -~~~~~~~~~~~dl~~~l~~l~------~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~  123 (275)
T 1a88_A           66 -STGHDMDTYAADVAALTEALD------LRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAV  123 (275)
T ss_dssp             -SSCCSHHHHHHHHHHHHHHHT------CCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCC
T ss_pred             -CCCCCHHHHHHHHHHHHHHcC------CCceEEEEeccchHHHHHHHHHhCchheEEEEEecCC
Confidence             111111 12355555555542      36899999999999998755 65 9999999988764

>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*

Probab=99.10  E-value=3.7e-10  Score=110.71  Aligned_cols=106  Identities=16%  Similarity=0.157  Sum_probs=78.2

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD  572 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d  572 (623)
                      ...|.||++||.+.  ....|...+..|+++||.|+++|+||.|.......       .....++..+.+..++++- -+
T Consensus        10 ~~~~~vvllHG~~~--~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~-------~~~~~~~~~~~~~~~l~~l-~~   79 (267)
T 3sty_A           10 FVKKHFVLVHAAFH--GAWCWYKIVALMRSSGHNVTALDLGASGINPKQAL-------QIPNFSDYLSPLMEFMASL-PA   79 (267)
T ss_dssp             CCCCEEEEECCTTC--CGGGGHHHHHHHHHTTCEEEEECCTTSTTCSCCGG-------GCCSHHHHHHHHHHHHHTS-CT
T ss_pred             CCCCeEEEECCCCC--CcchHHHHHHHHHhcCCeEEEeccccCCCCCCcCC-------ccCCHHHHHHHHHHHHHhc-CC
Confidence            44689999999953  34467788899999999999999999766544310       1123445544444444331 13


Q ss_pred             CCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .+++.|+|||+||.+++.++ .+|++++++|...+..
T Consensus        80 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~  116 (267)
T 3sty_A           80 NEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLM  116 (267)
T ss_dssp             TSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCC
T ss_pred             CCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCC
Confidence            57999999999999999999 8999999999888754

>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina}

Probab=99.10  E-value=1.1e-10  Score=114.88  Aligned_cols=110  Identities=18%  Similarity=0.309  Sum_probs=81.4

Q ss_pred             EEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHH
Q 006979          477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN  556 (623)
Q Consensus       477 ~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~  556 (623)
                      +.+|.|....  . .+++.|+||++||++.  ....+...+..|+++||.|+.+|+||+.                 ..+
T Consensus        34 ~~~~~p~~~~--~-~g~~~p~vv~~HG~~~--~~~~~~~~~~~l~~~G~~v~~~d~~~s~-----------------~~~   91 (258)
T 2fx5_A           34 CRIYRPRDLG--Q-GGVRHPVILWGNGTGA--GPSTYAGLLSHWASHGFVVAAAETSNAG-----------------TGR   91 (258)
T ss_dssp             EEEEEESSTT--G-GGCCEEEEEEECCTTC--CGGGGHHHHHHHHHHTCEEEEECCSCCT-----------------TSH
T ss_pred             EEEEeCCCCc--c-cCCCceEEEEECCCCC--CchhHHHHHHHHHhCCeEEEEecCCCCc-----------------cHH
Confidence            5677776411  0 0236799999999854  3346677889999999999999999641                 124


Q ss_pred             HHHHHHHHHHh---------CCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCC
Q 006979          557 DCCSCATFLVG---------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSI  609 (623)
Q Consensus       557 D~~~~~~~l~~---------~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d  609 (623)
                      |+..+++++.+         ...+|.+||+++|||+||++++.++ +++.++++|..+|...
T Consensus        92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a-~~~~v~~~v~~~~~~~  152 (258)
T 2fx5_A           92 EMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG-QDTRVRTTAPIQPYTL  152 (258)
T ss_dssp             HHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT-TSTTCCEEEEEEECCS
T ss_pred             HHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc-cCcCeEEEEEecCccc
Confidence            55566666654         2346788999999999999999887 4567999999888654

>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A*

Probab=99.10  E-value=1.4e-10  Score=121.61  Aligned_cols=138  Identities=17%  Similarity=0.111  Sum_probs=91.0

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHH----cCce---EEEEECCCCCCCC
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT----SRGW---AFVDVNYGGSTGY  538 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a----~~G~---~v~~~d~rGs~~~  538 (623)
                      +... +|..+++..+.|.+.. ..++.++.|.||++||.+..  ...|...+..|+    +.||   .|+++|+||   +
T Consensus        25 ~~~~-dg~~l~~~~~g~~~~~-~~~~~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G---~   97 (398)
T 2y6u_A           25 LCAT-DRLELTYDVYTSAERQ-RRSRTATRLNLVFLHGSGMS--KVVWEYYLPRLVAADAEGNYAIDKVLLIDQVN---H   97 (398)
T ss_dssp             SSTT-CCCEEEEEEEEESCTT-TCCTTCEEEEEEEECCTTCC--GGGGGGGGGGSCCCBTTTTEEEEEEEEECCTT---S
T ss_pred             ccCC-CceEEEEEEEecCCCC-CCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHHHHhhhhcCcceeEEEEEcCCC---C
Confidence            4455 8999999888775410 00012345899999998543  335666778888    4599   999999999   4


Q ss_pred             chhHHHhhc---cCCc-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          539 GREFRERLL---GRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       539 g~~~~~~~~---~~~g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      |.+-.....   ..+. ....+|+.+.++++...-.+++.++.++||||||++++.++ .+|++++++|..+|....
T Consensus        98 G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~  174 (398)
T 2y6u_A           98 GDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVIT  174 (398)
T ss_dssp             HHHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSC
T ss_pred             CCCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecccccc
Confidence            544332111   0111 12244555555544321124455699999999999999988 899999999999987653

>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A*

Probab=99.09  E-value=4.7e-10  Score=106.58  Aligned_cols=116  Identities=13%  Similarity=0.073  Sum_probs=80.3

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHc--CceEEEEECCCCC-----CCC-chhHHH-hhcc---CCc----cchH
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGS-----TGY-GREFRE-RLLG---RWG----IVDV  555 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~--~G~~v~~~d~rGs-----~~~-g~~~~~-~~~~---~~g----~~~~  555 (623)
                      +++.|+||++||.+  .....+...++.|++  +||.|+.+|++|.     .|+ +..|.+ ...+   ...    ....
T Consensus        11 ~~~~~~vv~~HG~~--~~~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~~   88 (218)
T 1auo_A           11 KPADACVIWLHGLG--ADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSA   88 (218)
T ss_dssp             SCCSEEEEEECCTT--CCTTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHH
T ss_pred             CCCCcEEEEEecCC--CChhhHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcccccchHHHHHHH
Confidence            45679999999984  344457778888998  9999999997741     010 000000 0000   000    1124


Q ss_pred             HHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhc--CCCceeEEEecccCCCH
Q 006979          556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVSIP  610 (623)
Q Consensus       556 ~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~--~~~~f~a~v~~~g~~d~  610 (623)
                      +|+.+.++++.+. .+|++||+++|+|+||++++.++.  +|++++++|+.+|..++
T Consensus        89 ~~~~~~~~~~~~~-~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~  144 (218)
T 1auo_A           89 KMVTDLIEAQKRT-GIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPT  144 (218)
T ss_dssp             HHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTT
T ss_pred             HHHHHHHHHHHHc-CCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCC
Confidence            5666667777663 478899999999999999998874  68899999999998775

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.09  E-value=1.9e-08  Score=102.32  Aligned_cols=219  Identities=9%  Similarity=0.021  Sum_probs=132.6

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+..++++ .++++...++.|.++|+.++ .....+...    ........|+|||++|+....+         ..+.+
T Consensus        83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~-~~~~~~~~~----~~~~~~~~~spdg~~l~~g~~d---------g~v~i  148 (321)
T 3ow8_A           83 VVSVDISHTLPIAASSSLDAHIRLWDLENG-KQIKSIDAG----PVDAWTLAFSPDSQYLATGTHV---------GKVNI  148 (321)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECC----TTCCCCEEECTTSSEEEEECTT---------SEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCC-CEEEEEeCC----CccEEEEEECCCCCEEEEEcCC---------CcEEE
Confidence            445555555 56667777889999999876 233444432    2334568899999988775433         56888


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      +++.+++.  ...+..........+|||||++|+....+.        .|.++|+.++.   ....+.+..    ..+..
T Consensus       149 ~~~~~~~~--~~~~~~~~~~v~~~~~spdg~~lasg~~dg--------~i~iwd~~~~~---~~~~~~~h~----~~v~~  211 (321)
T 3ow8_A          149 FGVESGKK--EYSLDTRGKFILSIAYSPDGKYLASGAIDG--------IINIFDIATGK---LLHTLEGHA----MPIRS  211 (321)
T ss_dssp             EETTTCSE--EEEEECSSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTTE---EEEEECCCS----SCCCE
T ss_pred             EEcCCCce--eEEecCCCceEEEEEECCCCCEEEEEcCCC--------eEEEEECCCCc---EEEEEcccC----CceeE
Confidence            89988762  233444445566788999999998776443        38888988762   334445444    56778


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEE-EeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      +.|+|||++++.... ++.  |..+|..+++... +......+....|.            |+++.| ++...++.-+| 
T Consensus       212 l~~spd~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~s------------p~~~~l-~s~s~D~~v~i-  274 (321)
T 3ow8_A          212 LTFSPDSQLLVTASD-DGY--IKIYDVQHANLAGTLSGHASWVLNVAFC------------PDDTHF-VSSSSDKSVKV-  274 (321)
T ss_dssp             EEECTTSCEEEEECT-TSC--EEEEETTTCCEEEEECCCSSCEEEEEEC------------TTSSEE-EEEETTSCEEE-
T ss_pred             EEEcCCCCEEEEEcC-CCe--EEEEECCCcceeEEEcCCCCceEEEEEC------------CCCCEE-EEEeCCCcEEE-
Confidence            999999996555544 454  5556766665433 32222223223333            266654 45555666555 


Q ss_pred             EEeCCCCce-eecccCCcceEee--eecCCEEE
Q 006979          385 ILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLF  414 (623)
Q Consensus       385 ~~d~~~~~~-~~lt~~~~~v~~~--~~~~~~~~  414 (623)
                       +|+.+++. ..+......+..+  ++++..++
T Consensus       275 -wd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~  306 (321)
T 3ow8_A          275 -WDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV  306 (321)
T ss_dssp             -EETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             -EeCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence             46666554 3444334445555  55555544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.08  E-value=2.1e-08  Score=101.97  Aligned_cols=261  Identities=14%  Similarity=0.096  Sum_probs=144.2

Q ss_pred             CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCC--
Q 006979           88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKD--  164 (623)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~--  164 (623)
                      ...+..+.|+|++.+||+....   +  .|++++..++ +.+.+....        ......++++++ .+++....+  
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~---~--~i~~~d~~~~-~~~~~~~~~--------~~~~~~i~~~~dg~l~v~~~~~~~  109 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFE---G--NIFKINPETK-EIKRPFVSH--------KANPAAIKIHKDGRLFVCYLGDFK  109 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTT---C--EEEEECTTTC-CEEEEEECS--------SSSEEEEEECTTSCEEEEECTTSS
T ss_pred             CccccCcEECCCCCEEEEECCC---C--EEEEEeCCCC-cEEEEeeCC--------CCCcceEEECCCCcEEEEeCCCCC
Confidence            3456788998866688877432   3  4677766533 333332111        011334555555 566665544  


Q ss_pred             --CcEEEEeCCCCCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc
Q 006979          165 --QRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS  241 (623)
Q Consensus       165 --~~l~~~d~~~g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~  241 (623)
                        +.|+++|++++  ..+ .+...  .......++.++|+|+.++.......   ......||++|.++++   .+.+..
T Consensus       110 ~~~~i~~~d~~~~--~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~---~~~~~~l~~~~~~~~~---~~~~~~  179 (333)
T 2dg1_A          110 STGGIFAATENGD--NLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGYS---TNPLGGVYYVSPDFRT---VTPIIQ  179 (333)
T ss_dssp             SCCEEEEECTTSC--SCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCBT---TBCCEEEEEECTTSCC---EEEEEE
T ss_pred             CCceEEEEeCCCC--EEEEEEccC--ccCCcccceEECCCCCEEEEeccccc---cCCCceEEEEeCCCCE---EEEeec
Confidence              57999999876  444 33321  11345667889999975544322111   0123689999998776   555544


Q ss_pred             CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCC-ceee--eEEEcCCCCCccccCcCceeCCCCcEEEEE
Q 006979          242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DVYK--RVCVAGFDPTIVESPTEPKWSSKGELFFVT  318 (623)
Q Consensus       242 ~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~  318 (623)
                      .........|+|||++|++....       ...|++++++..+ .+..  ..........  ..+..+.+++||++++..
T Consensus       180 ~~~~~~~i~~~~dg~~l~v~~~~-------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~l~v~~  250 (333)
T 2dg1_A          180 NISVANGIALSTDEKVLWVTETT-------ANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAM  250 (333)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGG-------GTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEE
T ss_pred             CCCcccceEECCCCCEEEEEeCC-------CCeEEEEEecCCCcCcccccceEEEecCCC--CCCCceEECCCCCEEEEE
Confidence            33345567899999988877532       3359999986432 2111  1111111100  234567899999755544


Q ss_pred             eCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC---CeEEEEEEeCCC
Q 006979          319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN---GRSYLGILDDFG  390 (623)
Q Consensus       319 ~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~---g~~~L~~~d~~~  390 (623)
                      ..   ...|+++|+++...+.+.......+...   ......+.   ++++.||++...+   ....||+++...
T Consensus       251 ~~---~~~v~~~d~~g~~~~~~~~~~~~~g~~~---~~~~~~~~---~dg~~L~v~~~~g~~~~~~~l~~~~~~~  316 (333)
T 2dg1_A          251 YG---QGRVLVFNKRGYPIGQILIPGRDEGHML---RSTHPQFI---PGTNQLIICSNDIEMGGGSMLYTVNGFA  316 (333)
T ss_dssp             ET---TTEEEEECTTSCEEEEEECTTGGGTCSC---BCCEEEEC---TTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred             cC---CCEEEEECCCCCEEEEEEcCCCcccccc---CcceEEEC---CCCCEEEEEeCccCCCCCceEEEEeccc
Confidence            32   2368888986544444432211000000   01223332   3777888877653   356788888653

>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12

Probab=99.08  E-value=1e-09  Score=108.32  Aligned_cols=116  Identities=16%  Similarity=0.218  Sum_probs=78.8

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHh
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER  545 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~  545 (623)
                      +.+. +|..++...+.            ..|.||++||.+..  ...|...+..|+++||.|+++|+||.|.+...    
T Consensus         3 ~~~~-~g~~l~y~~~g------------~~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~----   63 (273)
T 1a8s_A            3 FTTR-DGTQIYYKDWG------------SGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRGHGRSSQP----   63 (273)
T ss_dssp             EECT-TSCEEEEEEES------------CSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC----
T ss_pred             EecC-CCcEEEEEEcC------------CCCEEEEECCCCCc--HHHHhhHHhhHhhCCcEEEEECCCCCCCCCCC----
Confidence            3444 77777644331            12578999998543  34567778889999999999999997655321    


Q ss_pred             hccCCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC-CCceeEEEecccC
Q 006979          546 LLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF-RDTFKAGASLYGV  607 (623)
Q Consensus       546 ~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~-~~~f~a~v~~~g~  607 (623)
                       ...+.. ...+|+.+.++++      +.+++.++||||||.+++.++ .+ |++++++|...+.
T Consensus        64 -~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~  121 (273)
T 1a8s_A           64 -WSGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAV  121 (273)
T ss_dssp             -SSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred             -CCCCCHHHHHHHHHHHHHHh------CCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEccc
Confidence             111111 1234444444443      346899999999999998855 65 8999999988753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.08  E-value=7.6e-08  Score=98.54  Aligned_cols=292  Identities=11%  Similarity=0.064  Sum_probs=163.6

Q ss_pred             ccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCC
Q 006979           86 GASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKD  164 (623)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~  164 (623)
                      .....+..+.|+|++.++..-..   +|...+|.....   +....+..        |...+.+..++++ ..+++...+
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~---~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSK---DSSASVWYSLNG---ERLGTLDG--------HTGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEES---SSCEEEEETTTC---CEEEEECC--------CSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeeceEEEEEEcCCCCEEEEEeC---CCEEEEEeCCCc---hhhhhhhh--------cCCcEEEEEEcCCCCEEEEEeCC
Confidence            34456778899983333333322   466667755432   22222221        1222445566655 455565678


Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc---------c
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ---------E  235 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~---------~  235 (623)
                      +.|.++|+.++ .....+..     ........|+|+|+.+++...+...    ....|.++|+..+...         .
T Consensus        96 g~i~iwd~~~~-~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~----~~g~i~~~d~~~~~~~~~~~~~~~~~  165 (369)
T 3zwl_B           96 YSIKLWDVSNG-QCVATWKS-----PVPVKRVEFSPCGNYFLAILDNVMK----NPGSINIYEIERDSATHELTKVSEEP  165 (369)
T ss_dssp             TEEEEEETTTC-CEEEEEEC-----SSCEEEEEECTTSSEEEEEECCBTT----BCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred             CeEEEEECCCC-cEEEEeec-----CCCeEEEEEccCCCEEEEecCCccC----CCCEEEEEEecCCccceeecccccce
Confidence            88999999876 22333332     3446678899999999887664211    1145777777654310         0


Q ss_pred             ceecccCC--CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          236 PKVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       236 ~~~l~~~~--~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      ...+....  .......|+|||+.|+....+        ..|+++|+.....  ....+....    ..+..+.|+|||+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~--~~~~~~~~~----~~v~~~~~~~~~~  231 (369)
T 3zwl_B          166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKD--------GKISKYDVSNNYE--YVDSIDLHE----KSISDMQFSPDLT  231 (369)
T ss_dssp             SEEEECCTTCCCEEEEEECGGGCEEEEEETT--------SEEEEEETTTTTE--EEEEEECCS----SCEEEEEECTTSS
T ss_pred             eeeccCCcCccceeEEEEcCCCCEEEEEcCC--------CEEEEEECCCCcE--eEEEEecCC----CceeEEEECCCCC
Confidence            11111111  145567899999988876532        3589999987432  333444443    4567889999999


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC-----------CeEE
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-----------GRSY  382 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~-----------g~~~  382 (623)
                      +++.... ++  .|..+|..+++..........+....|.+            +++.+++....+           +...
T Consensus       232 ~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~~  296 (369)
T 3zwl_B          232 YFITSSR-DT--NSFLVDVSTLQVLKKYETDCPLNTAVITP------------LKEFIILGGGQEAKDVTTTSANEGKFE  296 (369)
T ss_dssp             EEEEEET-TS--EEEEEETTTCCEEEEEECSSCEEEEEECS------------SSSEEEEEECCC-------------CE
T ss_pred             EEEEecC-Cc--eEEEEECCCCceeeeecCCCCceeEEecC------------CCceEEEeecCCCceEEEEecCCCcce
Confidence            5555544 34  46677887776554444333333334433            555555544322           2336


Q ss_pred             EEEEeCCCCcee-ecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCC
Q 006979          383 LGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (623)
Q Consensus       383 L~~~d~~~~~~~-~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~  434 (623)
                      +.++|..+++.. .+......+..+  ++++..++ +++..   ..|..++++.+
T Consensus       297 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d---g~v~iw~~~~~  347 (369)
T 3zwl_B          297 ARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA-SGGED---GFIRLHHFEKS  347 (369)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE-EEETT---SEEEEEEECHH
T ss_pred             eEEEecCCCcchhheecccCcEEEEEECCCCCEEE-EEcCC---CeEEEEECccc
Confidence            777887766554 344344455555  55555444 43322   45666676654

>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*

Probab=99.08  E-value=1.3e-09  Score=109.29  Aligned_cols=118  Identities=13%  Similarity=0.047  Sum_probs=80.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH-HhHHHHcCceEEEEECCCCCCCCchhHHHhhccC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR  549 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~-~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~  549 (623)
                      +|..++...+-+.+          .|.||++||.+.  ....|.. .+..|+++||.|+++|+||.|.+...-  .....
T Consensus         9 ~g~~l~y~~~G~~~----------~~~vvllHG~~~--~~~~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~~--~~~~~   74 (298)
T 1q0r_A            9 GDVELWSDDFGDPA----------DPALLLVMGGNL--SALGWPDEFARRLADGGLHVIRYDHRDTGRSTTRD--FAAHP   74 (298)
T ss_dssp             TTEEEEEEEESCTT----------SCEEEEECCTTC--CGGGSCHHHHHHHHTTTCEEEEECCTTSTTSCCCC--TTTSC
T ss_pred             CCeEEEEEeccCCC----------CCeEEEEcCCCC--CccchHHHHHHHHHhCCCEEEeeCCCCCCCCCCCC--CCcCC
Confidence            68888766554321          257899999854  3345665 458899999999999999977654300  00111


Q ss_pred             Ccc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          550 WGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       550 ~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +.. ...+|+.+.++++      +.+++.++|||+||.+++.++ .+|++++++|...+..
T Consensus        75 ~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~  129 (298)
T 1q0r_A           75 YGFGELAADAVAVLDGW------GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG  129 (298)
T ss_dssp             CCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred             cCHHHHHHHHHHHHHHh------CCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccC
Confidence            111 1134444444443      246899999999999999988 8999999999887654

>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27

Probab=99.07  E-value=6.7e-11  Score=113.79  Aligned_cols=119  Identities=14%  Similarity=0.021  Sum_probs=84.2

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhh-------c
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL-------L  547 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~-------~  547 (623)
                      +..+++.|.+         +.|+||++||.+..  ...+...+..|+++||.|+.+|+||.|..........       .
T Consensus        13 ~~~~~~~~~~---------~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~   81 (238)
T 1ufo_A           13 LSVLARIPEA---------PKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEV   81 (238)
T ss_dssp             EEEEEEEESS---------CCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHH
T ss_pred             EEEEEEecCC---------CccEEEEECCCccc--chHHHHHHHHHHhCCCEEEEecCCCCccCCCCCCcccccchhhhH
Confidence            4445666642         46899999998533  3345566778889999999999999765432110000       0


Q ss_pred             cCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       548 ~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ...-....+|+.++++++.+++.   ++|+++|+|+||++++.++ .+|+.+++++...+.
T Consensus        82 ~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~  139 (238)
T 1ufo_A           82 YRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSG  139 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCC
Confidence            00011346788899999987653   7999999999999999998 789888888877664

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.07  E-value=4e-08  Score=100.99  Aligned_cols=246  Identities=11%  Similarity=0.002  Sum_probs=142.6

Q ss_pred             ecCCceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          144 EYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       144 ~~g~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      +.++.+.+++++..+++...++.|.++|+.++ .....+......-...+....|+|||++|+....+         ..|
T Consensus        82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~-~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d---------~~i  151 (344)
T 4gqb_B           82 EAGVADLTWVGERGILVASDSGAVELWELDEN-ETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD---------ICI  151 (344)
T ss_dssp             SSCEEEEEEETTTEEEEEETTSEEEEEEECTT-SSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred             CCCEEEEEEeCCCeEEEEECCCEEEEEeccCC-CceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC---------CeE
Confidence            44566778888755556667888999999876 22222211000002346678899999988876554         458


Q ss_pred             EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      .+.|+.+++.  +..+....+.+....|+||++.++.....+       ..|.+.|+..+..   ...+......  ..+
T Consensus       152 ~iwd~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D-------~~v~iwd~~~~~~---~~~~~~~~~~--~~~  217 (344)
T 4gqb_B          152 KVWDLAQQVV--LSSYRAHAAQVTCVAASPHKDSVFLSCSED-------NRILLWDTRCPKP---ASQIGCSAPG--YLP  217 (344)
T ss_dssp             EEEETTTTEE--EEEECCCSSCEEEEEECSSCTTEEEEEETT-------SCEEEEETTSSSC---EEECC----C--CCE
T ss_pred             EEEECCCCcE--EEEEcCcCCceEEEEecCCCCCceeeeccc-------cccccccccccce---eeeeecceee--ccc
Confidence            8889988862  334444445566678999998665444332       2378889887642   2222211101  334


Q ss_pred             cCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeE
Q 006979          304 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (623)
Q Consensus       304 ~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~  381 (623)
                      ....|+|++. ++..... ++.  |..+|..+++. ..+......+....|+            |++..++++...++.-
T Consensus       218 ~~~~~~p~~~~~l~sg~~-dg~--v~~wd~~~~~~~~~~~~h~~~v~~v~fs------------p~g~~~lasgs~D~~i  282 (344)
T 4gqb_B          218 TSLAWHPQQSEVFVFGDE-NGT--VSLVDTKSTSCVLSSAVHSQCVTGLVFS------------PHSVPFLASLSEDCSL  282 (344)
T ss_dssp             EEEEECSSCTTEEEEEET-TSE--EEEEESCC--CCEEEECCSSCEEEEEEC------------SSSSCCEEEEETTSCE
T ss_pred             eeeeecCCCCcceEEecc-CCc--EEEEECCCCcEEEEEcCCCCCEEEEEEc------------cCCCeEEEEEeCCCeE
Confidence            5788999766 6655544 454  55567766653 3333222223222332            2776777777677765


Q ss_pred             EEEEEeCCCCceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCC
Q 006979          382 YLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDD  433 (623)
Q Consensus       382 ~L~~~d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~  433 (623)
                      +|  +|..++++..+......+..+  ++++..+++.++..   ..|...++..
T Consensus       283 ~v--wd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D---~~v~~w~v~~  331 (344)
T 4gqb_B          283 AV--LDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD---HQVVHHVVPT  331 (344)
T ss_dssp             EE--ECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETT---SCEEEEECCC
T ss_pred             EE--EECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC---CeEEEEECCC
Confidence            55  588888776665444456665  66777777666532   2345555443

>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI}

Probab=99.06  E-value=3.3e-11  Score=131.63  Aligned_cols=110  Identities=19%  Similarity=0.199  Sum_probs=80.9

Q ss_pred             CCEEEEecCCCCCcccCc-CCHHhHHHHcCceEEEEECCCCCC-CCchhHHHhhccCCccchHHHHHHHHHHHHhCC---
Q 006979          495 PPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGST-GYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---  569 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~-~~~~~~~~a~~G~~v~~~d~rGs~-~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~---  569 (623)
                      .|+||++|||........ .....+.|+++|++|+.+|||.+. |+....   .....+.....|+.++++|+.++-   
T Consensus       115 ~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~~---~~~~~~n~gl~D~~~al~wv~~~i~~f  191 (551)
T 2fj0_A          115 LPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSLN---STSVPGNAGLRDMVTLLKWVQRNAHFF  191 (551)
T ss_dssp             EEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCHHHHHCCCS---SSSCCSCHHHHHHHHHHHHHHHHTGGG
T ss_pred             CCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCCccccccCc---ccCCCCchhHHHHHHHHHHHHHHHHHh
Confidence            899999999865333222 223456788899999999999521 111110   011234456899999999998752   


Q ss_pred             CCCCCceEEEEcChHHHHHHHHh-c--CCCceeEEEecccC
Q 006979          570 KADEKRLCITGGSAGGYTTLAAL-A--FRDTFKAGASLYGV  607 (623)
Q Consensus       570 ~~d~~rv~i~G~S~GG~~~~~~~-~--~~~~f~a~v~~~g~  607 (623)
                      ..|++||.|+|+|+||++++.++ .  .+.+|+++|+.+|.
T Consensus       192 ggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~  232 (551)
T 2fj0_A          192 GGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGT  232 (551)
T ss_dssp             TEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCC
T ss_pred             CCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCC
Confidence            26999999999999999999888 3  36799999999986

>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A

Probab=99.05  E-value=1.4e-09  Score=106.29  Aligned_cols=118  Identities=12%  Similarity=0.005  Sum_probs=81.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++...+.+           ..|.||++||.+.. ....|...++.|+++||.|+++|+||.|.+...     ...+
T Consensus        10 ~g~~l~~~~~g~-----------~~~~vvllHG~~~~-~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~-----~~~~   72 (254)
T 2ocg_A           10 NGVQLHYQQTGE-----------GDHAVLLLPGMLGS-GETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPP-----DRDF   72 (254)
T ss_dssp             TTEEEEEEEEEC-----------CSEEEEEECCTTCC-HHHHCHHHHHHSCTTTEEEEEECCTTSTTCCSS-----CCCC
T ss_pred             CCEEEEEEEecC-----------CCCeEEEECCCCCC-CccchHHHHHHHhhCCCeEEEECCCCCCCCCCC-----CCCC
Confidence            577777544321           13578999997433 123566778889999999999999997654321     1112


Q ss_pred             ccc-hHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          551 GIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       551 g~~-~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ... ..+|+.++++++.+.+   .+++.++|||+||.+++.++ .+|++++++|...+..
T Consensus        73 ~~~~~~~~~~~~~~~l~~l~---~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~  129 (254)
T 2ocg_A           73 PADFFERDAKDAVDLMKALK---FKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANA  129 (254)
T ss_dssp             CTTHHHHHHHHHHHHHHHTT---CSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCS
T ss_pred             ChHHHHHHHHHHHHHHHHhC---CCCEEEEEECHhHHHHHHHHHHChHHhhheeEecccc
Confidence            111 1244555555665543   46999999999999999999 8999999999887743

>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis}

Probab=99.05  E-value=2.2e-09  Score=108.16  Aligned_cols=125  Identities=18%  Similarity=0.131  Sum_probs=86.1

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~  541 (623)
                      +...++.  ++..++.+.+.+.          ..|.||++||++...  ..|...+..|++ ||.|+++|+||.+|....
T Consensus        46 ~~~~v~~--~~~~~~~~~~g~~----------~~~~vv~lHG~~~~~--~~~~~~~~~L~~-g~~vi~~D~~G~gG~s~~  110 (306)
T 2r11_A           46 KSFYIST--RFGQTHVIASGPE----------DAPPLVLLHGALFSS--TMWYPNIADWSS-KYRTYAVDIIGDKNKSIP  110 (306)
T ss_dssp             EEEEECC--TTEEEEEEEESCT----------TSCEEEEECCTTTCG--GGGTTTHHHHHH-HSEEEEECCTTSSSSCEE
T ss_pred             ceEEEec--CCceEEEEeeCCC----------CCCeEEEECCCCCCH--HHHHHHHHHHhc-CCEEEEecCCCCCCCCCC
Confidence            4555555  4667776654332          247899999996433  346667778887 999999999997332211


Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                             .......+|..+.+..+++.  ++.+++.++|+|+||++++.++ .+|++++++|...|..+.
T Consensus       111 -------~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~  171 (306)
T 2r11_A          111 -------ENVSGTRTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETF  171 (306)
T ss_dssp             -------CSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBT
T ss_pred             -------CCCCCCHHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCcccc
Confidence                   01123345555555544443  2347999999999999999988 889999999999998754

>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12

Probab=99.04  E-value=1.7e-09  Score=106.78  Aligned_cols=115  Identities=14%  Similarity=0.130  Sum_probs=78.3

Q ss_pred             ecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhh
Q 006979          467 PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL  546 (623)
Q Consensus       467 ~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~  546 (623)
                      .+. +|..++...+.            ..|.||++||.+..  ...|...+..|+++||.|+++|+||.|.+...     
T Consensus         4 ~~~-~g~~l~y~~~g------------~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~-----   63 (274)
T 1a8q_A            4 TTR-DGVEIFYKDWG------------QGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPV-----   63 (274)
T ss_dssp             ECT-TSCEEEEEEEC------------SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-----
T ss_pred             Ecc-CCCEEEEEecC------------CCceEEEECCCcch--HHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCC-----
Confidence            444 77777654331            12579999998533  34566778889999999999999997655321     


Q ss_pred             ccCCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC-CCceeEEEecccC
Q 006979          547 LGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF-RDTFKAGASLYGV  607 (623)
Q Consensus       547 ~~~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~-~~~f~a~v~~~g~  607 (623)
                      ...+.. ...+|+.+.++++      +.+++.++||||||.+++.++ .+ |++++++|...+.
T Consensus        64 ~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~  121 (274)
T 1a8q_A           64 WDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAI  121 (274)
T ss_dssp             SSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred             CCCCcHHHHHHHHHHHHHHc------CCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCC
Confidence            111111 1134444444443      246899999999999998865 65 8999999988753

>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus}

Probab=99.04  E-value=2.5e-09  Score=106.81  Aligned_cols=124  Identities=19%  Similarity=0.199  Sum_probs=82.3

Q ss_pred             EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECCCCCCCCch-h
Q 006979          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGSTGYGR-E  541 (623)
Q Consensus       464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~rGs~~~g~-~  541 (623)
                      ..+... +|..++...+.|.+          .|.||++||.+..  .. .|...+..| ++||.|+++|+||.|.+.. .
T Consensus         5 ~~~~~~-~g~~l~~~~~G~~~----------~~~vvllHG~~~~--~~~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~~   70 (286)
T 2yys_A            5 IGYVPV-GEAELYVEDVGPVE----------GPALFVLHGGPGG--NAYVLREGLQDY-LEGFRVVYFDQRGSGRSLELP   70 (286)
T ss_dssp             EEEEEC-SSCEEEEEEESCTT----------SCEEEEECCTTTC--CSHHHHHHHGGG-CTTSEEEEECCTTSTTSCCCC
T ss_pred             eeEEeE-CCEEEEEEeecCCC----------CCEEEEECCCCCc--chhHHHHHHHHh-cCCCEEEEECCCCCCCCCCCc
Confidence            333344 78888876665422          2679999999543  33 455667777 5689999999999765432 1


Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                           .. ......++..+.+..+++.  +..+++.++||||||.+++.++ .+|+ ++++|...+..++
T Consensus        71 -----~~-~~~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~  131 (286)
T 2yys_A           71 -----QD-PRLFTVDALVEDTLLLAEA--LGVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNF  131 (286)
T ss_dssp             -----SC-GGGCCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBH
T ss_pred             -----cC-cccCcHHHHHHHHHHHHHH--hCCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCc
Confidence                 00 0012334444333333332  1236899999999999999988 8999 9999999887654

>4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A

Probab=99.04  E-value=7.2e-10  Score=108.43  Aligned_cols=107  Identities=11%  Similarity=0.078  Sum_probs=75.5

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      ..|+||++||.+..  ...|...+..|++ ||.|+.+|+||.|......    .........++..+.+..+++.  ++.
T Consensus        19 ~~p~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~D~~G~G~S~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~   89 (269)
T 4dnp_A           19 GERVLVLAHGFGTD--QSAWNRILPFFLR-DYRVVLYDLVCAGSVNPDF----FDFRRYTTLDPYVDDLLHILDA--LGI   89 (269)
T ss_dssp             CSSEEEEECCTTCC--GGGGTTTGGGGTT-TCEEEEECCTTSTTSCGGG----CCTTTCSSSHHHHHHHHHHHHH--TTC
T ss_pred             CCCEEEEEeCCCCc--HHHHHHHHHHHhC-CcEEEEEcCCCCCCCCCCC----CCccccCcHHHHHHHHHHHHHh--cCC
Confidence            45899999998543  3456667778888 9999999999976653311    0011112344444444444433  234


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      +++.++|||+||++++.++ .+|++++++|...|...
T Consensus        90 ~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~  126 (269)
T 4dnp_A           90 DCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPR  126 (269)
T ss_dssp             CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSC
T ss_pred             CeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCC
Confidence            6999999999999999988 89999999999998653

>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14

Probab=99.04  E-value=2.4e-10  Score=111.64  Aligned_cols=112  Identities=11%  Similarity=-0.075  Sum_probs=80.4

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEE--CCCCCCCCchhHHHhhccCCc----cchHHHHHHHHHHHH
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV--NYGGSTGYGREFRERLLGRWG----IVDVNDCCSCATFLV  566 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~--d~rGs~~~g~~~~~~~~~~~g----~~~~~D~~~~~~~l~  566 (623)
                      ++.|+||++||+..  ....|...++.|++ +|.|+.+  |++|.|+++..- ....+.+.    ....+|+.+.++++.
T Consensus        60 ~~~p~vv~~HG~~~--~~~~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~  135 (251)
T 2r8b_A           60 AGAPLFVLLHGTGG--DENQFFDFGARLLP-QATILSPVGDVSEHGAARFFR-RTGEGVYDMVDLERATGKMADFIKANR  135 (251)
T ss_dssp             TTSCEEEEECCTTC--CHHHHHHHHHHHST-TSEEEEECCSEEETTEEESSC-BCGGGCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCC--CHhHHHHHHHhcCC-CceEEEecCCcCCCCCccccc-CCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            45699999999853  33355566777776 4999999  777765432100 00001111    123677888888887


Q ss_pred             hCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          567 GSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       567 ~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      ++.  +.+||+|+|+|+||++++.++ .+|++++++|.++|..+.
T Consensus       136 ~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~  178 (251)
T 2r8b_A          136 EHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPF  178 (251)
T ss_dssp             HHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCS
T ss_pred             hcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCc
Confidence            663  678999999999999999988 889999999999998764

>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A*

Probab=99.03  E-value=9.7e-10  Score=105.40  Aligned_cols=112  Identities=10%  Similarity=0.037  Sum_probs=80.5

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHc--CceEEEEECCCCCC----------------CCchhHHHhhccCCccc
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGST----------------GYGREFRERLLGRWGIV  553 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~--~G~~v~~~d~rGs~----------------~~g~~~~~~~~~~~g~~  553 (623)
                      +++.|+||++||.+.  ....|...+..|++  +||.|+.+|++|.+                |+|..      ......
T Consensus        21 ~~~~~~vv~lHG~~~--~~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~------~~~~~~   92 (226)
T 3cn9_A           21 PNADACIIWLHGLGA--DRTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPA------RAIDED   92 (226)
T ss_dssp             TTCCEEEEEECCTTC--CGGGGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSST------TCBCHH
T ss_pred             CCCCCEEEEEecCCC--ChHHHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCcccccccccccccc------ccccch
Confidence            456799999999953  33456778888887  99999999888421                12211      001111


Q ss_pred             ----hHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhc--CCCceeEEEecccCCCHHH
Q 006979          554 ----DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       554 ----~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~--~~~~f~a~v~~~g~~d~~~  612 (623)
                          ..+|+.+.++++.+. .+|+++|+++|+|+||++++.++.  +|+.++++|+.+|..++..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~  156 (226)
T 3cn9_A           93 QLNASADQVIALIDEQRAK-GIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFD  156 (226)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGG
T ss_pred             hHHHHHHHHHHHHHHHHHc-CCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCch
Confidence                235555666666553 478899999999999999998875  7889999999999887643

>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A

Probab=99.02  E-value=8.2e-10  Score=109.59  Aligned_cols=98  Identities=14%  Similarity=0.093  Sum_probs=72.6

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCCc
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      .||++||.+.  ....|...++.|+++||.|+++|+||.|.+...     ...+.. ...+|+.+.++++      +.++
T Consensus        25 pvvllHG~~~--~~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~-----~~~~~~~~~a~dl~~~l~~l------~~~~   91 (277)
T 1brt_A           25 PVVLIHGFPL--SGHSWERQSAALLDAGYRVITYDRRGFGQSSQP-----TTGYDYDTFAADLNTVLETL------DLQD   91 (277)
T ss_dssp             EEEEECCTTC--CGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-----SSCCSHHHHHHHHHHHHHHH------TCCS
T ss_pred             eEEEECCCCC--cHHHHHHHHHHHhhCCCEEEEeCCCCCCCCCCC-----CCCccHHHHHHHHHHHHHHh------CCCc
Confidence            3888999854  334677788899999999999999997655331     111111 1245565666555      2368


Q ss_pred             eEEEEcChHHHHHHHHh-cCCC-ceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRD-TFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~-~f~a~v~~~g~  607 (623)
                      +.++|||+||.+++.++ .+|+ +++++|...+.
T Consensus        92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~  125 (277)
T 1brt_A           92 AVLVGFSTGTGEVARYVSSYGTARIAKVAFLASL  125 (277)
T ss_dssp             EEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred             eEEEEECccHHHHHHHHHHcCcceEEEEEEecCc
Confidence            99999999999999988 8898 99999988764

>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0

Probab=99.02  E-value=1.4e-09  Score=105.99  Aligned_cols=103  Identities=17%  Similarity=0.068  Sum_probs=75.9

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+.  ....|...+..|+++||.|+.+|+||.|......    .   .....++..+.+..++++-.. .++
T Consensus         5 ~~vv~lHG~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~----~---~~~~~~~~~~~l~~~l~~l~~-~~~   74 (258)
T 3dqz_A            5 HHFVLVHNAYH--GAWIWYKLKPLLESAGHRVTAVELAASGIDPRPI----Q---AVETVDEYSKPLIETLKSLPE-NEE   74 (258)
T ss_dssp             CEEEEECCTTC--CGGGGTTHHHHHHHTTCEEEEECCTTSTTCSSCG----G---GCCSHHHHHHHHHHHHHTSCT-TCC
T ss_pred             CcEEEECCCCC--ccccHHHHHHHHHhCCCEEEEecCCCCcCCCCCC----C---ccccHHHhHHHHHHHHHHhcc-cCc
Confidence            78999999954  3345778889999999999999999976654321    1   113344444444444433112 379


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +.++|||+||++++.++ .+|++++++|...|..
T Consensus        75 ~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~  108 (258)
T 3dqz_A           75 VILVGFSFGGINIALAADIFPAKIKVLVFLNAFL  108 (258)
T ss_dssp             EEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCC
T ss_pred             eEEEEeChhHHHHHHHHHhChHhhcEEEEecCCC
Confidence            99999999999999999 7899999999888753

>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A

Probab=99.02  E-value=2.1e-09  Score=105.94  Aligned_cols=116  Identities=18%  Similarity=0.181  Sum_probs=78.5

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHh
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER  545 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~  545 (623)
                      +... +|..++...+-           . -|.||++||.+.  ....|...+..|+++||.|+++|+||.|.+....   
T Consensus         3 ~~~~-~g~~l~y~~~G-----------~-g~~vvllHG~~~--~~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~---   64 (271)
T 3ia2_A            3 FVAK-DGTQIYFKDWG-----------S-GKPVLFSHGWLL--DADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPW---   64 (271)
T ss_dssp             EECT-TSCEEEEEEES-----------S-SSEEEEECCTTC--CGGGGHHHHHHHHTTTCEEEEECCTTSTTSCCCS---
T ss_pred             EEcC-CCCEEEEEccC-----------C-CCeEEEECCCCC--cHHHHHHHHHHHHhCCceEEEecCCCCccCCCCC---
Confidence            4455 78888754442           1 145888999854  3346667788899999999999999976554321   


Q ss_pred             hccCCc-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-c-CCCceeEEEecccC
Q 006979          546 LLGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-A-FRDTFKAGASLYGV  607 (623)
Q Consensus       546 ~~~~~g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~-~~~~f~a~v~~~g~  607 (623)
                        ..+. ....+|+.+.++++      +.+++.++||||||++++.++ . .|++++++|...+.
T Consensus        65 --~~~~~~~~a~d~~~~l~~l------~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~  121 (271)
T 3ia2_A           65 --TGNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV  121 (271)
T ss_dssp             --SCCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred             --CCCCHHHHHHHHHHHHHHh------CCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccC
Confidence              1111 11235555555554      246899999999999666555 4 48999999987754

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=99.02  E-value=2.5e-09  Score=116.72  Aligned_cols=126  Identities=15%  Similarity=0.087  Sum_probs=89.1

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY  538 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~  538 (623)
                      ...+...+... +|..++.....            +.|.||++||++..  ...|...++.|+++||.|+.+|+||.|..
T Consensus       235 ~~~~~~~~~~~-dg~~l~~~~~g------------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~D~~G~G~S  299 (555)
T 3i28_A          235 SDMSHGYVTVK-PRVRLHFVELG------------SGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKGYGES  299 (555)
T ss_dssp             GGSEEEEEEEE-TTEEEEEEEEC------------SSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTS
T ss_pred             cccceeEEEeC-CCcEEEEEEcC------------CCCEEEEEeCCCCc--hhHHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence            34556666676 89888854442            23789999999543  34677788999999999999999997654


Q ss_pred             chhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          539 GREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       539 g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ....   ....+.. ...+|+.+.++++      +.+++.++|||+||++++.++ .+|++++++|...+..
T Consensus       300 ~~~~---~~~~~~~~~~~~d~~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~  362 (555)
T 3i28_A          300 SAPP---EIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPF  362 (555)
T ss_dssp             CCCS---CGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred             CCCC---CcccccHHHHHHHHHHHHHHc------CCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCC
Confidence            3321   0011111 1134555555554      346999999999999999999 8899999999887753

>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A*

Probab=99.02  E-value=1.1e-09  Score=108.60  Aligned_cols=98  Identities=15%  Similarity=0.125  Sum_probs=72.6

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCCc
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      .||++||.+.  ....|...+..|+++||.|+++|+||.|.+....     ..+.. ...+|+.+.++++      +.++
T Consensus        25 pvvllHG~~~--~~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~-----~~~~~~~~~~dl~~~l~~l------~~~~   91 (279)
T 1hkh_A           25 PVVLIHGYPL--DGHSWERQTRELLAQGYRVITYDRRGFGGSSKVN-----TGYDYDTFAADLHTVLETL------DLRD   91 (279)
T ss_dssp             EEEEECCTTC--CGGGGHHHHHHHHHTTEEEEEECCTTSTTSCCCS-----SCCSHHHHHHHHHHHHHHH------TCCS
T ss_pred             cEEEEcCCCc--hhhHHhhhHHHHHhCCcEEEEeCCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHhc------CCCc
Confidence            3889999854  3346777888999999999999999976653321     11111 1245666666655      2468


Q ss_pred             eEEEEcChHHHHHHHHh-cCCC-ceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRD-TFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~-~f~a~v~~~g~  607 (623)
                      +.++||||||.+++.++ .+|+ +++++|...+.
T Consensus        92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~  125 (279)
T 1hkh_A           92 VVLVGFSMGTGELARYVARYGHERVAKLAFLASL  125 (279)
T ss_dssp             EEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred             eEEEEeChhHHHHHHHHHHcCccceeeEEEEccC
Confidence            99999999999999988 8898 99999988764

>3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}

Probab=99.02  E-value=2.9e-09  Score=103.82  Aligned_cols=115  Identities=13%  Similarity=0.013  Sum_probs=81.9

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHh
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER  545 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~  545 (623)
                      +... +|..++...+.+            .|.||++||.+...  ..|...++.|+ +||.|+.+|+||.|.....    
T Consensus         7 ~~~~-~g~~l~~~~~g~------------~~~vv~lHG~~~~~--~~~~~~~~~l~-~~~~vi~~d~~G~G~S~~~----   66 (262)
T 3r0v_A            7 VPSS-DGTPIAFERSGS------------GPPVVLVGGALSTR--AGGAPLAERLA-PHFTVICYDRRGRGDSGDT----   66 (262)
T ss_dssp             EECT-TSCEEEEEEEEC------------SSEEEEECCTTCCG--GGGHHHHHHHT-TTSEEEEECCTTSTTCCCC----
T ss_pred             EEcC-CCcEEEEEEcCC------------CCcEEEECCCCcCh--HHHHHHHHHHh-cCcEEEEEecCCCcCCCCC----
Confidence            3344 788887554421            26799999985433  45667778887 8999999999997655432    


Q ss_pred             hccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          546 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       546 ~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                        .   ....+|..+.+..++++  .+ +++.++|||+||++++.++ .+| +++++|...|...
T Consensus        67 --~---~~~~~~~~~~~~~~~~~--l~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~  122 (262)
T 3r0v_A           67 --P---PYAVEREIEDLAAIIDA--AG-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYA  122 (262)
T ss_dssp             --S---SCCHHHHHHHHHHHHHH--TT-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCC
T ss_pred             --C---CCCHHHHHHHHHHHHHh--cC-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcc
Confidence              1   22345555444444443  23 6999999999999999998 888 9999999988754

>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A

Probab=99.02  E-value=2e-09  Score=107.37  Aligned_cols=120  Identities=22%  Similarity=0.232  Sum_probs=79.8

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++...+.+         +.+.|.||++||+++...  .+......++++||.|+++|+||.|.+...-    ...+
T Consensus        13 ~g~~l~~~~~g~---------~~~~~~vvllHG~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~----~~~~   77 (293)
T 1mtz_A           13 NGIYIYYKLCKA---------PEEKAKLMTMHGGPGMSH--DYLLSLRDMTKEGITVLFYDQFGCGRSEEPD----QSKF   77 (293)
T ss_dssp             TTEEEEEEEECC---------SSCSEEEEEECCTTTCCS--GGGGGGGGGGGGTEEEEEECCTTSTTSCCCC----GGGC
T ss_pred             CCEEEEEEEECC---------CCCCCeEEEEeCCCCcch--hHHHHHHHHHhcCcEEEEecCCCCccCCCCC----CCcc
Confidence            577777554432         112267889999754332  2222334456889999999999976543321    1111


Q ss_pred             cc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          551 GI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       551 g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      .. ...+|+.+.++++.     +.+++.|+||||||.+++.++ .+|++++++|...|....
T Consensus        78 ~~~~~~~dl~~~~~~l~-----~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~  134 (293)
T 1mtz_A           78 TIDYGVEEAEALRSKLF-----GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV  134 (293)
T ss_dssp             SHHHHHHHHHHHHHHHH-----TTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBH
T ss_pred             cHHHHHHHHHHHHHHhc-----CCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccCh
Confidence            11 12455555566552     125899999999999999988 789999999999988764

>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified}

Probab=99.01  E-value=2e-09  Score=107.59  Aligned_cols=115  Identities=14%  Similarity=0.046  Sum_probs=81.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++.....+            .|.||++||.+..  ...|...+..|.++||.|+.+|+||.|.....     .   
T Consensus        17 ~g~~l~~~~~g~------------~~~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~S~~~-----~---   74 (309)
T 3u1t_A           17 EGATIAYVDEGS------------GQPVLFLHGNPTS--SYLWRNIIPYVVAAGYRAVAPDLIGMGDSAKP-----D---   74 (309)
T ss_dssp             TTEEEEEEEEEC------------SSEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTTSCCC-----S---
T ss_pred             CCeEEEEEEcCC------------CCEEEEECCCcch--hhhHHHHHHHHHhCCCEEEEEccCCCCCCCCC-----C---
Confidence            577777544321            3689999998543  34566777887889999999999997654331     1   


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      .....+|..+.+..++++  .+.+++.|+|||+||++++.++ .+|++++++|...|...
T Consensus        75 ~~~~~~~~~~~~~~~~~~--~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~  132 (309)
T 3u1t_A           75 IEYRLQDHVAYMDGFIDA--LGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVP  132 (309)
T ss_dssp             SCCCHHHHHHHHHHHHHH--HTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCT
T ss_pred             cccCHHHHHHHHHHHHHH--cCCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCC
Confidence            123344544444444433  1246999999999999999988 89999999999987643

>2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A*

Probab=99.01  E-value=2.7e-09  Score=110.18  Aligned_cols=120  Identities=15%  Similarity=0.116  Sum_probs=83.9

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++.....|.+        +..|.||++||.+..  ...|...+..|+++||.|+.+|+||.|......      ..
T Consensus        11 ~g~~l~y~~~G~~~--------~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~vi~~d~~g~g~s~~~~------~~   74 (356)
T 2e3j_A           11 RGTRIHAVADSPPD--------QQGPLVVLLHGFPES--WYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYR------VQ   74 (356)
T ss_dssp             TTEEEEEEEECCTT--------CCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTTSCCCC------SG
T ss_pred             CCeEEEEEEecCCC--------CCCCEEEEECCCCCc--HHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCC------cc
Confidence            68888877776642        234789999998543  345666788899999999999999966543210      00


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .....++..+.+..+++.  ++.+++.++|||+||++++.++ .+|++++++|...+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~  131 (356)
T 2e3j_A           75 KAYRIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF  131 (356)
T ss_dssp             GGGSHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred             cccCHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence            112233433333333332  2357999999999999999988 8899999999987654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.01  E-value=1.4e-07  Score=96.48  Aligned_cols=232  Identities=12%  Similarity=0.024  Sum_probs=134.7

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.+++++ ..+++...++.|.++|+.++ .....+...    ........|+|+|++|+....+         ..|.+
T Consensus        35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------g~i~i  100 (369)
T 3zwl_B           35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNG-ERLGTLDGH----TGTIWSIDVDCFTKYCVTGSAD---------YSIKL  100 (369)
T ss_dssp             EEEEEECTTSCEEEEEESSSCEEEEETTTC-CEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------TEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-hhhhhhhhc----CCcEEEEEEcCCCCEEEEEeCC---------CeEEE
Confidence            455666665 45666667888999999876 233445432    3456778899999988876553         56899


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeee--------EEEcCCCC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--------VCVAGFDP  297 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~--------~~~~~~~~  297 (623)
                      +|+.+++   ...............|+|||++|+....+...   ....|.++++.........        ..+.....
T Consensus       101 wd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (369)
T 3zwl_B          101 WDVSNGQ---CVATWKSPVPVKRVEFSPCGNYFLAILDNVMK---NPGSINIYEIERDSATHELTKVSEEPIHKIITHEG  174 (369)
T ss_dssp             EETTTCC---EEEEEECSSCEEEEEECTTSSEEEEEECCBTT---BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred             EECCCCc---EEEEeecCCCeEEEEEccCCCEEEEecCCccC---CCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence            9998876   33333344445668899999999877643111   1246888887765321111        11111110


Q ss_pred             CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCC-CeEE-EEeecccccccccccccCcceeEEeecCCCCEEEEEE
Q 006979          298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN-NEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY  375 (623)
Q Consensus       298 ~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~-~~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~  375 (623)
                      .  ..+....|+|||++++.... +|  .|..+|+.+ ++.. .+......+....|.            ++++.|+. .
T Consensus       175 ~--~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~------------~~~~~l~~-~  236 (369)
T 3zwl_B          175 L--DAATVAGWSTKGKYIIAGHK-DG--KISKYDVSNNYEYVDSIDLHEKSISDMQFS------------PDLTYFIT-S  236 (369)
T ss_dssp             C--CCEEEEEECGGGCEEEEEET-TS--EEEEEETTTTTEEEEEEECCSSCEEEEEEC------------TTSSEEEE-E
T ss_pred             c--cceeEEEEcCCCCEEEEEcC-CC--EEEEEECCCCcEeEEEEecCCCceeEEEEC------------CCCCEEEE-e
Confidence            0  15667889999985555544 34  466677776 3433 333232233333333            26665544 4


Q ss_pred             EECCeEEEEEEeCCCCceeecccCCcceEee--eecCCEEEEEEe
Q 006979          376 RQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGA  418 (623)
Q Consensus       376 ~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~  418 (623)
                      ..++  .|.++|+.+++..........+..+  ++++..+++...
T Consensus       237 ~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  279 (369)
T 3zwl_B          237 SRDT--NSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGG  279 (369)
T ss_dssp             ETTS--EEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEEC
T ss_pred             cCCc--eEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeec
Confidence            4455  4666787776654332233334433  666666665543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.01  E-value=3.2e-08  Score=102.20  Aligned_cols=294  Identities=11%  Similarity=0.010  Sum_probs=150.3

Q ss_pred             CCccCceEEcCCCcEEEEeecCCC---CCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCC
Q 006979           88 SKRLGGTAVDGHGRLIWLESRPTE---AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD  164 (623)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~~~~e---~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~  164 (623)
                      ...+..++|+|++.+.-.......   ++.  ++.++..++.....+..     ...-++.++.+.+++++.-+++...+
T Consensus        42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~--v~~~~~~~~~~~~~~~~-----~~~~~~~~V~~~~~s~d~~~l~~s~d  114 (357)
T 4g56_B           42 EVQIGAVRYRRDGALLLAASSLSSRTWGGS--IWVFKDPEGAPNESLCT-----AGVQTEAGVTDVAWVSEKGILVASDS  114 (357)
T ss_dssp             CSEEEEEEECSSSCEEEEEECSSSSSCCEE--EEEESSCC---CGGGCS-----EEEECSSCEEEEEEETTTEEEEEETT
T ss_pred             cCCEEEEEECCCCCEEEEEcCCCCccccCe--EEEEECCCCCcceeEec-----ccCCCCCCEEEEEEcCCCCEEEEECC
Confidence            345778999994444434332110   122  44444332211122211     11123445567777777334445567


Q ss_pred             CcEEEEeCCCCCCCceecCC-CCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979          165 QRLYKHSIDSKDSSPLPITP-DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~-~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~  243 (623)
                      +.|.++|+.++  ....... ....-...+....|+|||++|+....+         ..|.++|+.+++.  ...+....
T Consensus       115 g~v~lWd~~~~--~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d---------g~v~iwd~~~~~~--~~~~~~h~  181 (357)
T 4g56_B          115 GAVELWEILEK--ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD---------FSVKVWDLSQKAV--LKSYNAHS  181 (357)
T ss_dssp             SCEEEC----------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT---------SCEEEEETTTTEE--EEEECCCS
T ss_pred             CEEEEeecccc--ceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC---------CeEEEEECCCCcE--EEEEcCCC
Confidence            88999998765  2211111 000002345678899999988776554         4588889988762  23343334


Q ss_pred             CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCC
Q 006979          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN  322 (623)
Q Consensus       244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~  322 (623)
                      ..+...+|+||++.++.....+       ..|.+.|+..+..   ...+......  ..+....|+|++. ++..... +
T Consensus       182 ~~v~~v~~s~~~~~~~~s~~~d-------g~v~~wd~~~~~~---~~~~~~~~~~--~~v~~v~~sp~~~~~la~g~~-d  248 (357)
T 4g56_B          182 SEVNCVAACPGKDTIFLSCGED-------GRILLWDTRKPKP---ATRIDFCASD--TIPTSVTWHPEKDDTFACGDE-T  248 (357)
T ss_dssp             SCEEEEEECTTCSSCEEEEETT-------SCEEECCTTSSSC---BCBCCCTTCC--SCEEEEEECTTSTTEEEEEES-S
T ss_pred             CCEEEEEEccCCCceeeeeccC-------CceEEEECCCCce---eeeeeecccc--ccccchhhhhcccceEEEeec-c
Confidence            4556678999997554443232       2377778876632   1111111101  3456789999876 6655544 3


Q ss_pred             CeeeEEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCc
Q 006979          323 GFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT  401 (623)
Q Consensus       323 g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~  401 (623)
                      +  .|..+|+.+++. +.+......+....|+            |+++.++++...++.-+|  +|.++++..+......
T Consensus       249 ~--~i~~wd~~~~~~~~~~~~~~~~v~~l~~s------------p~~~~~lasgs~D~~i~i--wd~~~~~~~~~~~H~~  312 (357)
T 4g56_B          249 G--NVSLVNIKNPDSAQTSAVHSQNITGLAYS------------YHSSPFLASISEDCTVAV--LDADFSEVFRDLSHRD  312 (357)
T ss_dssp             S--CEEEEESSCGGGCEEECCCSSCEEEEEEC------------SSSSCCEEEEETTSCEEE--ECTTSCEEEEECCCSS
T ss_pred             c--ceeEEECCCCcEeEEEeccceeEEEEEEc------------CCCCCEEEEEeCCCEEEE--EECCCCcEeEECCCCC
Confidence            4  355667766653 3333222222222332            277667776666776554  5887777655433334


Q ss_pred             ceEee--eecCCEEEEEEecCCCCCeEEEEEcCC
Q 006979          402 DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDD  433 (623)
Q Consensus       402 ~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~  433 (623)
                      .+..+  ++.++.++++++..   ..|...++..
T Consensus       313 ~V~~vafsP~d~~~l~s~s~D---g~v~iW~~~~  343 (357)
T 4g56_B          313 FVTGVAWSPLDHSKFTTVGWD---HKVLHHHLPS  343 (357)
T ss_dssp             CEEEEEECSSSTTEEEEEETT---SCEEEEECC-
T ss_pred             CEEEEEEeCCCCCEEEEEcCC---CeEEEEECCC
Confidence            46655  55344444454432   3456666544

>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis}

Probab=99.01  E-value=2.5e-09  Score=104.99  Aligned_cols=103  Identities=14%  Similarity=0.021  Sum_probs=76.2

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+..  ...|...+..|++ ||.|+.+|+||.|.....-      .......+|+.+.+..++++  .+.++
T Consensus        24 ~~vv~~HG~~~~--~~~~~~~~~~L~~-~~~vi~~d~~G~G~s~~~~------~~~~~~~~~~~~~~~~~~~~--l~~~~   92 (278)
T 3oos_A           24 PPLCVTHLYSEY--NDNGNTFANPFTD-HYSVYLVNLKGCGNSDSAK------NDSEYSMTETIKDLEAIREA--LYINK   92 (278)
T ss_dssp             SEEEECCSSEEC--CTTCCTTTGGGGG-TSEEEEECCTTSTTSCCCS------SGGGGSHHHHHHHHHHHHHH--TTCSC
T ss_pred             CeEEEEcCCCcc--hHHHHHHHHHhhc-CceEEEEcCCCCCCCCCCC------CcccCcHHHHHHHHHHHHHH--hCCCe
Confidence            679999998543  3346667778877 9999999999976543321      01122355555555555444  23469


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      +.++|||+||.+++.++ .+|++++++|...|...
T Consensus        93 ~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~  127 (278)
T 3oos_A           93 WGFAGHSAGGMLALVYATEAQESLTKIIVGGAAAS  127 (278)
T ss_dssp             EEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred             EEEEeecccHHHHHHHHHhCchhhCeEEEecCccc
Confidence            99999999999999998 88999999999999877

>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17

Probab=99.01  E-value=3.2e-10  Score=123.50  Aligned_cols=126  Identities=20%  Similarity=0.288  Sum_probs=85.6

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCH--H-hHHHH-cCceEEEEECCCCCC-CC--chhHHHhh
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNL--S-IQYWT-SRGWAFVDVNYGGST-GY--GREFRERL  546 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~--~-~~~~a-~~G~~v~~~d~rGs~-~~--g~~~~~~~  546 (623)
                      +...+|.|.+..    .++++|+||++|||+...... .+..  . .+.++ ..|++|+.+|||.+. |+  ..+..+  
T Consensus       106 l~l~v~~P~~~~----~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~~gf~~~~~~~~--  179 (544)
T 1thg_A          106 LYLNVFRPAGTK----PDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA--  179 (544)
T ss_dssp             CEEEEEEETTCC----TTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH--
T ss_pred             eEEEEEeCCCCC----CCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCcccCCCcccccc--
Confidence            556677786521    156789999999997544332 2221  1 11122 358999999999643 11  111111  


Q ss_pred             ccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cC--------CCceeEEEecccC
Q 006979          547 LGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AF--------RDTFKAGASLYGV  607 (623)
Q Consensus       547 ~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~--------~~~f~a~v~~~g~  607 (623)
                       ...+...+.|+.+|++|+.++-   ..|++||.|+|+|+||++++.++ ..        ..+|+++|+.+|.
T Consensus       180 -~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~  251 (544)
T 1thg_A          180 -EGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG  251 (544)
T ss_dssp             -HTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred             -cCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEeccc
Confidence             1234445899999999998752   37999999999999999998777 42        4589999999984

>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A

Probab=99.00  E-value=2.3e-09  Score=107.03  Aligned_cols=128  Identities=9%  Similarity=-0.041  Sum_probs=87.0

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+...+..  +|..++.....            ..|.||++||.+..  ...|...+..|++ ||.|+.+|+||.|...
T Consensus        12 ~~~~~~~~~--~g~~l~~~~~g------------~~~~vv~lHG~~~~--~~~~~~~~~~l~~-~~~v~~~D~~G~G~S~   74 (306)
T 3r40_A           12 GFGSEWINT--SSGRIFARVGG------------DGPPLLLLHGFPQT--HVMWHRVAPKLAE-RFKVIVADLPGYGWSD   74 (306)
T ss_dssp             TCEEEEECC--TTCCEEEEEEE------------CSSEEEEECCTTCC--GGGGGGTHHHHHT-TSEEEEECCTTSTTSC
T ss_pred             CCceEEEEe--CCEEEEEEEcC------------CCCeEEEECCCCCC--HHHHHHHHHHhcc-CCeEEEeCCCCCCCCC
Confidence            344444444  67778755432            22689999999543  3456777888888 9999999999976543


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ....   .........++..+.+..++++  .+.+++.++|||+||.+++.++ .+|++++++|...+...
T Consensus        75 ~~~~---~~~~~~~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~  140 (306)
T 3r40_A           75 MPES---DEQHTPYTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPT  140 (306)
T ss_dssp             CCCC---CTTCGGGSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCH
T ss_pred             CCCC---CcccCCCCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCC
Confidence            3210   0000123345555555544443  2346899999999999999998 89999999999998644

>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti}

Probab=99.00  E-value=2.8e-09  Score=107.58  Aligned_cols=114  Identities=12%  Similarity=0.100  Sum_probs=81.2

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++...+.+            .|.||++||.+..  ...|...++.|++ ||.|+.+|+||.|....        ..
T Consensus        56 ~~~~~~~~~~g~------------~p~vv~lhG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G~G~S~~--------~~  112 (314)
T 3kxp_A           56 GRITLNVREKGS------------GPLMLFFHGITSN--SAVFEPLMIRLSD-RFTTIAVDQRGHGLSDK--------PE  112 (314)
T ss_dssp             SSCEEEEEEECC------------SSEEEEECCTTCC--GGGGHHHHHTTTT-TSEEEEECCTTSTTSCC--------CS
T ss_pred             CCEEEEEEecCC------------CCEEEEECCCCCC--HHHHHHHHHHHHc-CCeEEEEeCCCcCCCCC--------CC
Confidence            577777554422            4789999998543  3456667777777 69999999999766531        11


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      .....+|..+.+..++++  ++.++++++|+|+||++++.++ .+|++++++|...|...
T Consensus       113 ~~~~~~~~~~dl~~~l~~--l~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~  170 (314)
T 3kxp_A          113 TGYEANDYADDIAGLIRT--LARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPY  170 (314)
T ss_dssp             SCCSHHHHHHHHHHHHHH--HTSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTT
T ss_pred             CCCCHHHHHHHHHHHHHH--hCCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCC
Confidence            223455555555554443  1237999999999999999999 88999999999987654

>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*

Probab=99.00  E-value=1.9e-10  Score=114.75  Aligned_cols=115  Identities=18%  Similarity=0.115  Sum_probs=79.0

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcC--ceEEEEECCC---CCCCCchhHHHh--hccCCc-------cchHHH
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYG---GSTGYGREFRER--LLGRWG-------IVDVND  557 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~--G~~v~~~d~r---Gs~~~g~~~~~~--~~~~~g-------~~~~~D  557 (623)
                      +++.|+||++||..  .....+...++.|+.+  ++.++.|+-+   ...+.|..|...  ......       ....++
T Consensus        63 ~~~~plVI~LHG~G--~~~~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~~~~~~~~~~~~~  140 (285)
T 4fhz_A           63 GEATSLVVFLHGYG--ADGADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAAAEGMAAAARD  140 (285)
T ss_dssp             TCCSEEEEEECCTT--BCHHHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCC--CCHHHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccchhhHHHHHHHHH
Confidence            77889999999963  2333444456667654  8999998743   122334433210  001000       112345


Q ss_pred             HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       558 ~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +.+.++.+.++..+|++||+|+|+|+||++++.++ ++|+.|+++|+++|..
T Consensus       141 l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l  192 (285)
T 4fhz_A          141 LDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRL  192 (285)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCC
T ss_pred             HHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCc
Confidence            66777777777679999999999999999999998 8999999999999864

>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*

Probab=99.00  E-value=1.3e-09  Score=107.54  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=72.7

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh-CCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG-SGKAD  572 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~-~~~~d  572 (623)
                      ..|.||++||.+.  ....|...+..|+++||.|+++|+||.|.+....    ..   ...+++..+.+..+++ .+.  
T Consensus         9 ~g~~vvllHG~~~--~~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~----~~---~~~~~~~a~dl~~~l~~l~~--   77 (264)
T 2wfl_A            9 QQKHFVLVHGGCL--GAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRL----DE---IHTFRDYSEPLMEVMASIPP--   77 (264)
T ss_dssp             CCCEEEEECCTTC--CGGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG----GG---CCSHHHHHHHHHHHHHHSCT--
T ss_pred             CCCeEEEECCCcc--ccchHHHHHHHHHhCCCEEEEeecCCCCCCCCCc----cc---ccCHHHHHHHHHHHHHHhCC--
Confidence            4477999999853  3345777888999999999999999976553311    01   1223444333333332 221  


Q ss_pred             CCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      .+++.|+||||||.+++.++ .+|++++++|...+.
T Consensus        78 ~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~  113 (264)
T 2wfl_A           78 DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAM  113 (264)
T ss_dssp             TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSC
T ss_pred             CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeec
Confidence            36899999999999999988 899999999987753

>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans}

Probab=99.00  E-value=2.6e-09  Score=106.23  Aligned_cols=123  Identities=13%  Similarity=-0.008  Sum_probs=84.6

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCch
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR  540 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~  540 (623)
                      .+...+... +|..++...+.+.+         +.|.||++||.+.  ....|...+..|++ ||.|+++|+||.|.+..
T Consensus         5 ~~~~~~~~~-~g~~l~~~~~g~~~---------~~~~vvllHG~~~--~~~~~~~~~~~L~~-~~~vi~~Dl~G~G~S~~   71 (285)
T 3bwx_A            5 YEDRYWTSS-DGLRLHFRAYEGDI---------SRPPVLCLPGLTR--NARDFEDLATRLAG-DWRVLCPEMRGRGDSDY   71 (285)
T ss_dssp             SEEEEEECT-TSCEEEEEEECBCT---------TSCCEEEECCTTC--CGGGGHHHHHHHBB-TBCEEEECCTTBTTSCC
T ss_pred             cccCeeecC-CCceEEEEEcCCCC---------CCCcEEEECCCCc--chhhHHHHHHHhhc-CCEEEeecCCCCCCCCC
Confidence            345566666 88888877665432         1356888999853  33456677788876 99999999999765432


Q ss_pred             hHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecc
Q 006979          541 EFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLY  605 (623)
Q Consensus       541 ~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~  605 (623)
                      .-   ....+.. ...+|+.+.++.+.      .+++.++||||||.+++.++ .+|++++++|...
T Consensus        72 ~~---~~~~~~~~~~a~dl~~~l~~l~------~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~  129 (285)
T 3bwx_A           72 AK---DPMTYQPMQYLQDLEALLAQEG------IERFVAIGTSLGGLLTMLLAAANPARIAAAVLND  129 (285)
T ss_dssp             CS---SGGGCSHHHHHHHHHHHHHHHT------CCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred             CC---CccccCHHHHHHHHHHHHHhcC------CCceEEEEeCHHHHHHHHHHHhCchheeEEEEec
Confidence            10   0011111 12456666666552      36899999999999999988 8999999998853

>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A*

Probab=99.00  E-value=4.4e-10  Score=122.16  Aligned_cols=127  Identities=19%  Similarity=0.231  Sum_probs=86.8

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-CCH--H-hHHH-HcCceEEEEECCCCCC-CC--chhHHHh
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNL--S-IQYW-TSRGWAFVDVNYGGST-GY--GREFRER  545 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-~~~--~-~~~~-a~~G~~v~~~d~rGs~-~~--g~~~~~~  545 (623)
                      .+...+|.|++..    .++++|+||++|||+....... +..  . ...+ .+.|++|+.+|||.+. |+  +.+... 
T Consensus        97 cl~l~v~~P~~~~----~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~~-  171 (534)
T 1llf_A           97 CLTINVVRPPGTK----AGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA-  171 (534)
T ss_dssp             CCEEEEEECTTCC----TTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH-
T ss_pred             CeEEEEEECCCCC----CCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCcccccc-
Confidence            3666788887521    1567899999999975433322 221  1 1112 2368999999999632 11  111111 


Q ss_pred             hccCCccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHh-cC--------CCceeEEEecccC
Q 006979          546 LLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAAL-AF--------RDTFKAGASLYGV  607 (623)
Q Consensus       546 ~~~~~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~-~~--------~~~f~a~v~~~g~  607 (623)
                        ...+...++|+.+|++|+.++   --.|++||.|+|+|+||++++.++ ..        ..+|+++|+.+|.
T Consensus       172 --~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~  243 (534)
T 1llf_A          172 --EGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA  243 (534)
T ss_dssp             --HTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred             --cCCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence              123444589999999999875   237999999999999999888777 43        5689999999984

>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0

Probab=98.99  E-value=4e-09  Score=104.09  Aligned_cols=118  Identities=14%  Similarity=0.050  Sum_probs=80.5

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHh
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER  545 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~  545 (623)
                      +... +|..++...+-+.          ..|.||++||.+.  ....|......|++ +|.|+++|.||.|.+...    
T Consensus         9 ~~~~-~g~~l~y~~~G~~----------~~p~lvl~hG~~~--~~~~w~~~~~~L~~-~~~vi~~D~rG~G~S~~~----   70 (266)
T 3om8_A            9 LATS-DGASLAYRLDGAA----------EKPLLALSNSIGT--TLHMWDAQLPALTR-HFRVLRYDARGHGASSVP----   70 (266)
T ss_dssp             EECT-TSCEEEEEEESCT----------TSCEEEEECCTTC--CGGGGGGGHHHHHT-TCEEEEECCTTSTTSCCC----
T ss_pred             Eecc-CCcEEEEEecCCC----------CCCEEEEeCCCcc--CHHHHHHHHHHhhc-CcEEEEEcCCCCCCCCCC----
Confidence            3444 7888886655432          2478899999843  33456677778876 799999999997655321    


Q ss_pred             hccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          546 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       546 ~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                       ...   ...++..+.+..+++.  ...+++.++||||||.+++.++ .+|+++++.|...+.
T Consensus        71 -~~~---~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~  127 (266)
T 3om8_A           71 -PGP---YTLARLGEDVLELLDA--LEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTS  127 (266)
T ss_dssp             -CSC---CCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred             -CCC---CCHHHHHHHHHHHHHH--hCCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCc
Confidence             111   2333333333333322  1236899999999999999988 899999999987653

>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...

Probab=98.99  E-value=5.9e-10  Score=121.23  Aligned_cols=127  Identities=16%  Similarity=0.113  Sum_probs=87.8

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-CHHhHHHHc-CceEEEEECCCCC-CCCchhHHHhhccCCc
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYGGS-TGYGREFRERLLGRWG  551 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-~~~~~~~a~-~G~~v~~~d~rGs-~~~g~~~~~~~~~~~g  551 (623)
                      +...+|.|...      .++.|+||++|||......... ......|++ +|++|+.+|||-+ -||....  ......+
T Consensus        93 l~lnv~~P~~~------~~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~~~  164 (529)
T 1p0i_A           93 LYLNVWIPAPK------PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALP--GNPEAPG  164 (529)
T ss_dssp             CEEEEEEESSC------CSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCTTSCS
T ss_pred             CeEEEeeCCCC------CCCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEecccccccccccCC--CCCCCcC
Confidence            55566778651      3568999999999643332221 123466776 7999999999932 1111100  0011223


Q ss_pred             cchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCCC
Q 006979          552 IVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVSI  609 (623)
Q Consensus       552 ~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~d  609 (623)
                      ...+.|+.+|++|+.++-   -.|++||.|+|+|+||++++.++..   ..+|+++|+.+|..+
T Consensus       165 n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~  228 (529)
T 1p0i_A          165 NMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN  228 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred             cccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence            345889999999998752   3799999999999999999988833   468999999999753

>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis}

Probab=98.99  E-value=3.5e-09  Score=108.14  Aligned_cols=124  Identities=16%  Similarity=0.123  Sum_probs=82.3

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCC-CEEEEecCCCCCcccCcCCHHhHHHHc-CceEEEEECCCCCCCCchhHHHhhcc
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKP-PLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLG  548 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~-Pliv~~hGg~~~~~~~~~~~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~  548 (623)
                      +|.+++...+-+.+       +.++ +.||++||++....  .|......|++ .||.|+++|+||.|.+...-.. ...
T Consensus        36 ~g~~l~y~~~G~~~-------~~~~g~plvllHG~~~~~~--~w~~~~~~l~~~~~~~Via~D~rG~G~S~~~~~~-~~~  105 (330)
T 3nwo_A           36 GDHETWVQVTTPEN-------AQPHALPLIVLHGGPGMAH--NYVANIAALADETGRTVIHYDQVGCGNSTHLPDA-PAD  105 (330)
T ss_dssp             TTEEEEEEEECCSS-------CCTTCCCEEEECCTTTCCS--GGGGGGGGHHHHHTCCEEEECCTTSTTSCCCTTS-CGG
T ss_pred             cCcEEEEEEecCcc-------CCCCCCcEEEECCCCCCch--hHHHHHHHhccccCcEEEEECCCCCCCCCCCCCC-ccc
Confidence            68888887776643       2211 24777899865433  45455666775 6999999999997765431000 001


Q ss_pred             CCc-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          549 RWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       549 ~~g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      .+. ....+|+.+.++.+.      .+++.++||||||++++.++ .+|++++++|...+...+
T Consensus       106 ~~~~~~~a~dl~~ll~~lg------~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~  163 (330)
T 3nwo_A          106 FWTPQLFVDEFHAVCTALG------IERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASM  163 (330)
T ss_dssp             GCCHHHHHHHHHHHHHHHT------CCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBH
T ss_pred             cccHHHHHHHHHHHHHHcC------CCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcch
Confidence            111 112455666665552      36899999999999999998 899999999988776543

>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*

Probab=98.99  E-value=4.6e-10  Score=123.34  Aligned_cols=117  Identities=20%  Similarity=0.207  Sum_probs=81.3

Q ss_pred             CCCCCEEEEecCCCCCcccCcC-CHHhHHHHc-CceEEEEECCC-CCCCCch---hHHH-hhccCCccchHHHHHHHHHH
Q 006979          492 EEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYG-GSTGYGR---EFRE-RLLGRWGIVDVNDCCSCATF  564 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~-~~~~~~~a~-~G~~v~~~d~r-Gs~~~g~---~~~~-~~~~~~g~~~~~D~~~~~~~  564 (623)
                      ++++|+||++|||+........ ......|++ .|++|+.+||| |.-||..   .+.. ......+..-+.|+.+|++|
T Consensus       138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al~w  217 (585)
T 1dx4_A          138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW  217 (585)
T ss_dssp             CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHHHH
Confidence            4678999999999654333221 123456665 78999999999 3222211   1100 01112233448999999999


Q ss_pred             HHhCC---CCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCC
Q 006979          565 LVGSG---KADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVS  608 (623)
Q Consensus       565 l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~  608 (623)
                      +.++-   -.||+||.|+|+|+||++++.++..   ..+|+++|+.+|..
T Consensus       218 v~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~  267 (585)
T 1dx4_A          218 LKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM  267 (585)
T ss_dssp             HHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred             HHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence            99863   2699999999999999999887733   46899999999864

>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica}

Probab=98.99  E-value=1.6e-09  Score=106.61  Aligned_cols=105  Identities=11%  Similarity=0.060  Sum_probs=76.0

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+..  ...|...++.|++ ||.|+.+|+||.|.......    ........++..+.+..+++.  .+.++
T Consensus        29 ~~vv~lHG~~~~--~~~~~~~~~~l~~-g~~v~~~d~~G~G~s~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~   99 (282)
T 3qvm_A           29 KTVLLAHGFGCD--QNMWRFMLPELEK-QFTVIVFDYVGSGQSDLESF----STKRYSSLEGYAKDVEEILVA--LDLVN   99 (282)
T ss_dssp             CEEEEECCTTCC--GGGGTTTHHHHHT-TSEEEECCCTTSTTSCGGGC----CTTGGGSHHHHHHHHHHHHHH--TTCCS
T ss_pred             CeEEEECCCCCC--cchHHHHHHHHhc-CceEEEEecCCCCCCCCCCC----CccccccHHHHHHHHHHHHHH--cCCCc
Confidence            899999998543  3466677888887 99999999999776544210    001112345555555544443  23479


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      +.++|||+||++++.++ .+|+.++++|...|...
T Consensus       100 ~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~  134 (282)
T 3qvm_A          100 VSIIGHSVSSIIAGIASTHVGDRISDITMICPSPC  134 (282)
T ss_dssp             EEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred             eEEEEecccHHHHHHHHHhCchhhheEEEecCcch
Confidence            99999999999999998 78999999999998753

>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida}

Probab=98.98  E-value=2.8e-09  Score=104.26  Aligned_cols=115  Identities=8%  Similarity=0.054  Sum_probs=80.3

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++...+.+.          ..|.||++||.+..  ...|...+..|++ +|.|+++|+||.|.....     .   
T Consensus         7 ~g~~l~~~~~g~~----------~~~~vv~lHG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G~G~S~~~-----~---   65 (264)
T 3ibt_A            7 NGTLMTYSESGDP----------HAPTLFLLSGWCQD--HRLFKNLAPLLAR-DFHVICPDWRGHDAKQTD-----S---   65 (264)
T ss_dssp             TTEECCEEEESCS----------SSCEEEEECCTTCC--GGGGTTHHHHHTT-TSEEEEECCTTCSTTCCC-----C---
T ss_pred             CCeEEEEEEeCCC----------CCCeEEEEcCCCCc--HhHHHHHHHHHHh-cCcEEEEccccCCCCCCC-----c---
Confidence            5777775554332          23789999999543  3457777788855 599999999997654432     1   


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC-CCceeEEEecccCC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF-RDTFKAGASLYGVS  608 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~-~~~f~a~v~~~g~~  608 (623)
                      .....++..+.+..++++  .+.+++.++|||+||++++.++ .+ |++++++|...+..
T Consensus        66 ~~~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~  123 (264)
T 3ibt_A           66 GDFDSQTLAQDLLAFIDA--KGIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLL  123 (264)
T ss_dssp             SCCCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCS
T ss_pred             cccCHHHHHHHHHHHHHh--cCCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCC
Confidence            122344444444444333  1346899999999999999999 89 99999999998754

>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens}

Probab=98.98  E-value=4.9e-10  Score=108.36  Aligned_cols=118  Identities=14%  Similarity=0.078  Sum_probs=76.7

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcC-----ceEEEEECCCCCC------CCchhHHHh-h---ccCCccchHH
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-----GWAFVDVNYGGST------GYGREFRER-L---LGRWGIVDVN  556 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~-----G~~v~~~d~rGs~------~~g~~~~~~-~---~~~~g~~~~~  556 (623)
                      +++.|+||++||...  ....+......++++     ||.|+.+|.++..      +.+..|.+. .   ........++
T Consensus        20 ~~~~p~vv~lHG~g~--~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~   97 (239)
T 3u0v_A           20 GRHSASLIFLHGSGD--SGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESID   97 (239)
T ss_dssp             SCCCEEEEEECCTTC--CHHHHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHHH
T ss_pred             CCCCcEEEEEecCCC--chhhHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhHH
Confidence            456799999999843  333455566777664     7999999986421      111111110 0   0000112233


Q ss_pred             HHH----HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979          557 DCC----SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       557 D~~----~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                      ++.    ..++.+.+. .+|.+||+|+|+|+||++++.++ .+|+.|+++|+.+|..+...
T Consensus        98 ~~~~~l~~~~~~~~~~-~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~  157 (239)
T 3u0v_A           98 VMCQVLTDLIDEEVKS-GIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKAS  157 (239)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTC
T ss_pred             HHHHHHHHHHHHHHHh-CCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchh
Confidence            444    444444333 47889999999999999999988 88999999999999887643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.98  E-value=4.5e-08  Score=99.71  Aligned_cols=123  Identities=10%  Similarity=0.013  Sum_probs=69.2

Q ss_pred             ceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCC---CeeecceeeCCCCCEEEEEEeccCCCCC---Cc
Q 006979          148 GAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEP---LVSYADGIFDPRFNRYVTVREDRRQDAL---NS  219 (623)
Q Consensus       148 ~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~---~~~~~d~~~sPdG~~l~~v~~~~~~~~~---~~  219 (623)
                      ...+++++  .+++....++.|+++|+.++ .....+.... .+   ......+.|||||++|++...+......   ..
T Consensus        46 ~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           46 GTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANLSS-VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             CEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEESCC-STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             ceeEECCCCCEEEEEeCCCCcEEEEeCCCC-cEEEEEEccc-ccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            34556655  56777767788999999876 2222333210 00   1113567899999998887654100000   01


Q ss_pred             eeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC
Q 006979          220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN  283 (623)
Q Consensus       220 ~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~  283 (623)
                      ...|+++|+++++..................|||||+ |++.  ..        .|+++|+.++
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~--~~--------~i~~~d~~~~  176 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA--GP--------DIYKMDVKTG  176 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE--SS--------SEEEECTTTC
T ss_pred             CCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEc--cC--------cEEEEeCCCC
Confidence            2679999998865211111222222344566999999 6543  11        1777776654

>3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum}

Probab=98.98  E-value=1.8e-09  Score=103.91  Aligned_cols=101  Identities=15%  Similarity=0.172  Sum_probs=71.9

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHH----hCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV----GSG  569 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~----~~~  569 (623)
                      +.|.||++||.+...  ..|. ....++ +||.|+.+|+||.|....         ......++..+.+..++    .+.
T Consensus        15 ~~~~vv~~hG~~~~~--~~~~-~~~~l~-~g~~v~~~d~~g~g~s~~---------~~~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3e0x_A           15 SPNTLLFVHGSGCNL--KIFG-ELEKYL-EDYNCILLDLKGHGESKG---------QCPSTVYGYIDNVANFITNSEVTK   81 (245)
T ss_dssp             CSCEEEEECCTTCCG--GGGT-TGGGGC-TTSEEEEECCTTSTTCCS---------CCCSSHHHHHHHHHHHHHHCTTTT
T ss_pred             CCCEEEEEeCCcccH--HHHH-HHHHHH-hCCEEEEecCCCCCCCCC---------CCCcCHHHHHHHHHHHHHhhhhHh
Confidence            458999999985443  3444 555555 899999999999765431         11223444444444444    222


Q ss_pred             CCCCCceEEEEcChHHHHHHHHh-c-CCCceeEEEecccCCCH
Q 006979          570 KADEKRLCITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVSIP  610 (623)
Q Consensus       570 ~~d~~rv~i~G~S~GG~~~~~~~-~-~~~~f~a~v~~~g~~d~  610 (623)
                      ..+  ++.++|||+||++++.++ . +|+ ++++|..+|..++
T Consensus        82 ~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~  121 (245)
T 3e0x_A           82 HQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARF  121 (245)
T ss_dssp             TCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBC
T ss_pred             hcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCcc
Confidence            233  999999999999999999 7 899 9999999998765

>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40

Probab=98.98  E-value=2.1e-09  Score=110.91  Aligned_cols=131  Identities=17%  Similarity=0.191  Sum_probs=84.9

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-----------cCCHHh---HHHHcCceEEEEECCCC--
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----------ILNLSI---QYWTSRGWAFVDVNYGG--  534 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-----------~~~~~~---~~~a~~G~~v~~~d~rG--  534 (623)
                      +|..++...+.+.+       ....|.||++||.+......           .|...+   +.+.++||.|+.+|+||  
T Consensus        29 ~g~~l~y~~~g~~~-------~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~  101 (366)
T 2pl5_A           29 SPVVIAYETYGTLS-------SSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGC  101 (366)
T ss_dssp             SSEEEEEEEEECCC-------TTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCS
T ss_pred             cCceeeEEeccCcC-------CCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcc
Confidence            45566655554432       22357899999996554411           344444   24567899999999999  


Q ss_pred             CCCCchhHHHhh-----ccCCccchHHHHHHHHHHHHhCCCCCCCce-EEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          535 STGYGREFRERL-----LGRWGIVDVNDCCSCATFLVGSGKADEKRL-CITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       535 s~~~g~~~~~~~-----~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv-~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      .|..+..-....     ...+.....+|+.+.+..++++  ++.+++ .++|||+||.+++.++ .+|++++++|...|.
T Consensus       102 ~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~  179 (366)
T 2pl5_A          102 KGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAST  179 (366)
T ss_dssp             SSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCC
T ss_pred             cCCCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccC
Confidence            454432110000     0001123566666666665554  234788 8999999999999998 899999999999987


Q ss_pred             CCH
Q 006979          608 SIP  610 (623)
Q Consensus       608 ~d~  610 (623)
                      ...
T Consensus       180 ~~~  182 (366)
T 2pl5_A          180 AEH  182 (366)
T ss_dssp             SBC
T ss_pred             ccC
Confidence            653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.97  E-value=1.2e-07  Score=98.19  Aligned_cols=218  Identities=12%  Similarity=-0.003  Sum_probs=116.2

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC-CCCcccceeccc--CCCcccceeeCCCCCEEE-EEEecCCCC
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQNIQEPKVLVS--GSDFYAFPRMDPRGERMA-WIEWHHPNM  268 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~-~g~~~~~~~l~~--~~~~~~~p~wSPDG~~la-~~~~~~~~~  268 (623)
                      ....++||||++|+.+.++          .+.+++++ +++   ...+..  .........|||||++|+ ++. +....
T Consensus        42 ~~~~a~spdg~~l~~~~~~----------~v~~~~~~~~g~---~~~~~~~~~~g~~~~~~~spdg~~l~~~~~-~~~~~  107 (365)
T 1jof_A           42 ISWMTFDHERKNIYGAAMK----------KWSSFAVKSPTE---IVHEASHPIGGHPRANDADTNTRAIFLLAA-KQPPY  107 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBT----------EEEEEEEEETTE---EEEEEEEECCSSGGGGCTTSCCEEEEEEEC-SSTTC
T ss_pred             CcEEEECCCCCEEEEEccc----------eEEEEEECCCCC---EEEeeEeecCCCCccEEECCCCCEEEEEEe-cCCcc
Confidence            3457799999988766542          36666665 565   333321  112244578999999743 443 20000


Q ss_pred             -CC------CceEEEEEEecCCCceeee-EEEc-CCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecC-CCeEE
Q 006979          269 -PW------DKAELWVGYISENGDVYKR-VCVA-GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEVL  338 (623)
Q Consensus       269 -p~------~~~~L~v~d~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~-~~~~~  338 (623)
                       .+      ....+.+++++..+.+... ..+. ...    ..+..+.|+|||+.+++++.  +...|+.++.+ +++.+
T Consensus       108 ~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~spdG~~l~~~~~--~~~~v~~~~~~~~g~~~  181 (365)
T 1jof_A          108 AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQEN----TGIHGMVFDPTETYLYSADL--TANKLWTHRKLASGEVE  181 (365)
T ss_dssp             CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTT----CCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCEE
T ss_pred             eeccceeecCCceEEEEccCCCCcCcceEeeEEeCCC----CcceEEEECCCCCEEEEEcC--CCCEEEEEEECCCCCEE
Confidence             00      1234777777654332211 1111 111    34567899999996666665  33467777776 67655


Q ss_pred             EEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee----ec---ccCC---c-------
Q 006979          339 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS----LL---DIPF---T-------  401 (623)
Q Consensus       339 ~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~----~l---t~~~---~-------  401 (623)
                      .+.........    .+...+.|.   |+++.+|+..+.++...+|.++.++++..    .+   ..+.   .       
T Consensus       182 ~~~~~~~~~~g----~~p~~~~~s---pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~  254 (365)
T 1jof_A          182 LVGSVDAPDPG----DHPRWVAMH---PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL  254 (365)
T ss_dssp             EEEEEECSSTT----CCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred             EeeeEecCCCC----CCCCEeEEC---CCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence            44321100000    011233443   38888888776677778888887666542    12   1110   1       


Q ss_pred             ceE--e-eeecCCEEEEEEecCC--CCCeEEEEEcC-CCcce
Q 006979          402 DID--N-ITLGNDCLFVEGASGV--EPSSVAKVTLD-DHKLK  437 (623)
Q Consensus       402 ~v~--~-~~~~~~~~~~~~~s~~--~~~~ly~~~l~-~~~~~  437 (623)
                      ...  . ++++++.+|+......  .+..|.+++++ +++++
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence            122  3 4678888776554322  23366667664 56543

>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40

Probab=98.97  E-value=2.4e-09  Score=110.99  Aligned_cols=130  Identities=16%  Similarity=0.099  Sum_probs=84.9

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-------cCCHHhH---HHHcCceEEEEECCCC-CCCCc
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-------ILNLSIQ---YWTSRGWAFVDVNYGG-STGYG  539 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-------~~~~~~~---~~a~~G~~v~~~d~rG-s~~~g  539 (623)
                      +|..++...+.+.+       ....|.||++||.+......       .|...+.   .|+++||.|+++|+|| .++..
T Consensus        42 ~g~~l~y~~~g~~~-------~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~  114 (377)
T 2b61_A           42 SYINVAYQTYGTLN-------DEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTT  114 (377)
T ss_dssp             CSEEEEEEEESCCC-------TTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSS
T ss_pred             cceeEEEEeccccc-------ccCCCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCC
Confidence            45556655554432       22347899999996544420       1444443   4778999999999999 34432


Q ss_pred             hhHH-Hhh-----ccCCccchHHHHHHHHHHHHhCCCCCCCceE-EEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          540 REFR-ERL-----LGRWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       540 ~~~~-~~~-----~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~-i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ..-. +..     ...+.....+|+.+.+..+++.  .+.+++. ++|||+||.+++.++ .+|++++++|...+...
T Consensus       115 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~  190 (377)
T 2b61_A          115 GPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIY  190 (377)
T ss_dssp             CTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSS
T ss_pred             CCcccCccccccccccCCcccHHHHHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCcc
Confidence            2100 000     0111134567777777766654  3346888 999999999999998 89999999999998654

>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A

Probab=98.96  E-value=2.1e-09  Score=107.05  Aligned_cols=116  Identities=11%  Similarity=-0.015  Sum_probs=82.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++...+.+.+          .|.||++||.+...  ..|......|+ +||.|+.+|+||.|.....        .
T Consensus        18 ~g~~l~~~~~g~~~----------~~~vl~lHG~~~~~--~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~--------~   76 (299)
T 3g9x_A           18 LGERMHYVDVGPRD----------GTPVLFLHGNPTSS--YLWRNIIPHVA-PSHRCIAPDLIGMGKSDKP--------D   76 (299)
T ss_dssp             TTEEEEEEEESCSS----------SCCEEEECCTTCCG--GGGTTTHHHHT-TTSCEEEECCTTSTTSCCC--------C
T ss_pred             CCeEEEEEecCCCC----------CCEEEEECCCCccH--HHHHHHHHHHc-cCCEEEeeCCCCCCCCCCC--------C
Confidence            68888866654321          35789999985433  35666677775 5999999999997654331        1


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      .....+|..+.+..+++.  ++.+++.++|||+||++++.++ .+|++++++|...++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~  134 (299)
T 3g9x_A           77 LDYFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRP  134 (299)
T ss_dssp             CCCCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCC
T ss_pred             CcccHHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcc
Confidence            123455555555555544  2456899999999999999998 89999999999885543

>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A*

Probab=98.96  E-value=6.3e-09  Score=105.82  Aligned_cols=118  Identities=15%  Similarity=0.100  Sum_probs=81.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++.....            ..|.||++||.+..  ...|...+..|+++||.|+++|+||.|.+...-. .....+
T Consensus        19 ~g~~l~y~~~G------------~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~-~~~~~~   83 (328)
T 2cjp_A           19 NGLNMHLAELG------------EGPTILFIHGFPEL--WYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPL-NDPSKF   83 (328)
T ss_dssp             TTEEEEEEEEC------------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTTSTTCBCCCT-TCGGGG
T ss_pred             CCcEEEEEEcC------------CCCEEEEECCCCCc--hHHHHHHHHHHHHCCcEEEEECCCCCCCCCCcCc-CCcccc
Confidence            67777754431            12689999998543  3456677888999999999999999766533100 000111


Q ss_pred             c-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          551 G-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       551 g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      . ....+|+.+.++.+..    +.+++.++||||||.+++.++ .+|++++++|...+.
T Consensus        84 ~~~~~a~dl~~~l~~l~~----~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~  138 (328)
T 2cjp_A           84 SILHLVGDVVALLEAIAP----NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH  138 (328)
T ss_dssp             SHHHHHHHHHHHHHHHCT----TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred             cHHHHHHHHHHHHHHhcC----CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence            1 1224566666666531    247999999999999999998 899999999987643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.96  E-value=1.2e-07  Score=100.98  Aligned_cols=256  Identities=9%  Similarity=0.046  Sum_probs=146.4

Q ss_pred             CceEEEeCC--EEEEEeCCCCcEEEEeCC--CCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 006979          147 GGAFRIFGD--TVIFSNYKDQRLYKHSID--SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE  222 (623)
Q Consensus       147 ~~~~~~s~d--~l~f~~~~~~~l~~~d~~--~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~  222 (623)
                      +.+.+++++  .++++...++.|.++++.  ++ ...+.+...  ..........|+|+|++|+....+         ..
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~---------g~  172 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-NVLKLRKRF--CFSKRPNAISIAEDDTTVIIADKF---------GD  172 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-SCEEEEEEE--ECSSCEEEEEECTTSSEEEEEETT---------SE
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-ceeeeeecc--cCCCCceEEEEcCCCCEEEEEeCC---------Cc
Confidence            445666666  455777778888888887  55 233444310  002345678899999988876542         56


Q ss_pred             EEEEEcCCCCcc--cceecccCCCcccceeeCCC---CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979          223 IVAIALNGQNIQ--EPKVLVSGSDFYAFPRMDPR---GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP  297 (623)
Q Consensus       223 L~~idl~~g~~~--~~~~l~~~~~~~~~p~wSPD---G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~  297 (623)
                      ++++++.++...  ....+......+....||||   |++|+....+.        .|+++|+..+..  ....+.+.. 
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~--------~i~vwd~~~~~~--~~~~~~~h~-  241 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE--------HIKISHYPQCFI--VDKWLFGHK-  241 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS--------CEEEEEESCTTC--EEEECCCCS-
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC--------cEEEEECCCCce--eeeeecCCC-
Confidence            899998876521  01123333344556789999   88887665332        388889876632  222233444 


Q ss_pred             CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccc-----------------cccccCccee
Q 006979          298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-----------------LWVFGINSYE  360 (623)
Q Consensus       298 ~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~-----------------~w~~~~~~~~  360 (623)
                         ..+..+.|+ ||++++.... ++  .|..+|..+++..............                 ........+.
T Consensus       242 ---~~v~~~~~s-d~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  314 (450)
T 2vdu_B          242 ---HFVSSICCG-KDYLLLSAGG-DD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII  314 (450)
T ss_dssp             ---SCEEEEEEC-STTEEEEEES-SS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred             ---CceEEEEEC-CCCEEEEEeC-CC--eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence               466788999 9985555443 34  5666787777644333211000000                 0011112333


Q ss_pred             EEeecCCCCEEEEEEEECCeEEEEEE-eCCCCcee---ecccCCcceEeeeecCCEEEEEEecCCCCC------eEEEEE
Q 006979          361 IIQSHGEKNLIACSYRQNGRSYLGIL-DDFGHSLS---LLDIPFTDIDNITLGNDCLFVEGASGVEPS------SVAKVT  430 (623)
Q Consensus       361 ~l~~s~~~~~l~~~~~~~g~~~L~~~-d~~~~~~~---~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~------~ly~~~  430 (623)
                      +.   ++++.+++....++.-.||.+ +..++.++   .+..+ ..+..+....+.+++...+...+.      .+|.++
T Consensus       315 ~~---~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          315 KS---KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EC---SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             Ee---CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            43   377777776656777777766 33343333   34333 445555333356666666555443      889888


Q ss_pred             cCCCcc
Q 006979          431 LDDHKL  436 (623)
Q Consensus       431 l~~~~~  436 (623)
                      .++++.
T Consensus       391 ~~~~~~  396 (450)
T 2vdu_B          391 LNENSF  396 (450)
T ss_dssp             TTTTEE
T ss_pred             cCCCeE
Confidence            877764

>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ...

Probab=98.96  E-value=8.9e-10  Score=119.92  Aligned_cols=127  Identities=20%  Similarity=0.201  Sum_probs=88.4

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-CHHhHHHH-cCceEEEEECCCCC-CCCchhHHHhhccCCc
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWT-SRGWAFVDVNYGGS-TGYGREFRERLLGRWG  551 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-~~~~~~~a-~~G~~v~~~d~rGs-~~~g~~~~~~~~~~~g  551 (623)
                      +...+|.|...      .++.|+||++|||......... ......|+ ++|++|+.+|||-. -||...-  ......+
T Consensus        95 l~lnv~~P~~~------~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~~~  166 (537)
T 1ea5_A           95 LYLNIWVPSPR------PKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALH--GSQEAPG  166 (537)
T ss_dssp             CEEEEEECSSC------CSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCT--TCSSSCS
T ss_pred             CeEEEeccCCC------CCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCccccccccCC--CCCCCcC
Confidence            55566778651      3678999999999654333221 13345677 78999999999931 1111100  0011233


Q ss_pred             cchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCCC
Q 006979          552 IVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVSI  609 (623)
Q Consensus       552 ~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~d  609 (623)
                      ...+.|+.+|++|+.++.   -.||+||.|+|+|+||++++.++..   ..+|+++|+.+|...
T Consensus       167 n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~  230 (537)
T 1ea5_A          167 NVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN  230 (537)
T ss_dssp             CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred             ccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence            345899999999998852   2799999999999999999988833   568999999999653

>4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A

Probab=98.96  E-value=3.5e-09  Score=104.12  Aligned_cols=103  Identities=11%  Similarity=0.121  Sum_probs=69.0

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|.||++||.+.  ....|...+..+.++||.|+.+|+||.|........     ......+|..+.+..+++.  .+.+
T Consensus        24 ~~~vv~lHG~~~--~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~   94 (279)
T 4g9e_A           24 GAPLLMIHGNSS--SGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDP-----DRSYSMEGYADAMTEVMQQ--LGIA   94 (279)
T ss_dssp             EEEEEEECCTTC--CGGGGHHHHHSHHHHHEEEEEECCTTSTTSCCCSCH-----HHHSSHHHHHHHHHHHHHH--HTCC
T ss_pred             CCeEEEECCCCC--chhHHHHHHhHHHhcCCeEEeecCCCCCCCCCCCCc-----ccCCCHHHHHHHHHHHHHH--hCCC
Confidence            378999999954  334566677777888999999999997765432100     0112344444444444433  1346


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ++.++|||+||.+++.++ .+|+ +.++|...+.
T Consensus        95 ~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~  127 (279)
T 4g9e_A           95 DAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTP  127 (279)
T ss_dssp             CCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCC
T ss_pred             ceEEEEECchHHHHHHHHhhCCc-ceeEEEecCC
Confidence            899999999999999999 7888 5555555443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.96  E-value=3.3e-07  Score=95.18  Aligned_cols=243  Identities=5%  Similarity=-0.089  Sum_probs=126.3

Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCC-CCCCceeEEEEEEcCCCCcccceecccC--
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQEPKVLVSG--  242 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~-~~~~~~~~L~~idl~~g~~~~~~~l~~~--  242 (623)
                      .|+++|++++ .....+..+     .. ..+.+||||+++++....... ......+.+.++|+++.+.  ...+.-+  
T Consensus        48 ~v~v~D~~t~-~~~~~i~~g-----~~-p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--~~~i~~~~~  118 (373)
T 2mad_H           48 QQWVLDAGSG-SILGHVNGG-----FL-PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--IADIELPDA  118 (373)
T ss_pred             EEEEEECCCC-eEEEEecCC-----CC-CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--EEEEECCCc
Confidence            6899999876 223334432     12 268899999998876531100 0000125688999987652  2222111  


Q ss_pred             -----CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc----ccCcCceeCCCCc
Q 006979          243 -----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV----ESPTEPKWSSKGE  313 (623)
Q Consensus       243 -----~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ws~DG~  313 (623)
                           ........|||||++|++.....      ...|.++| +++..+.  .++.-.. ...    ....-...++||+
T Consensus       119 ~~~~~g~~p~~~~~spDG~~l~v~n~~~------~~~v~viD-~t~~~~~--~~i~~~~-~~~~~~~~~~~~~~~~~dg~  188 (373)
T 2mad_H          119 PRFDVGPYSWMNANTPNNADLLFFQFAA------GPAVGLVV-QGGSSDD--QLLSSPT-CYHIHPGAPSTFYLLCAQGG  188 (373)
T ss_pred             cccccCCCccceEECCCCCEEEEEecCC------CCeEEEEE-CCCCEEe--EEcCCCc-eEEEEeCCCceEEEEcCCCC
Confidence                 12234578999999998775321      23588888 7653211  1011000 000    0000012223333


Q ss_pred             --------------------------------------EEEEEeCCCCeeeEEEEecCCCeEEEEeec---ccccccccc
Q 006979          314 --------------------------------------LFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLW  352 (623)
Q Consensus       314 --------------------------------------l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~---~~~~~~~~w  352 (623)
                                                            ++|.+..    .+++.+|..++..+.+..-   ........|
T Consensus       189 ~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~  264 (373)
T 2mad_H          189 LAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS----GKILQADISAAGATNKAPIDALSGGRKADTW  264 (373)
T ss_pred             EEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCC----ceEEEEeccCCcceEeeeeeecCCcccccce
Confidence                                                  3333311    1566666655433322211   011112334


Q ss_pred             cccCcc-eeEEeecCCCCEEEEEEEEC-------CeEEEEEEeCCCCce-eecccCCcce-EeeeecCCEEEEEEecCCC
Q 006979          353 VFGINS-YEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSL-SLLDIPFTDI-DNITLGNDCLFVEGASGVE  422 (623)
Q Consensus       353 ~~~~~~-~~~l~~s~~~~~l~~~~~~~-------g~~~L~~~d~~~~~~-~~lt~~~~~v-~~~~~~~~~~~~~~~s~~~  422 (623)
                      .++... +.+   +++++.+|+.....       +...|+++|++++++ +.|..+.... -.+++++++++|+....  
T Consensus       265 ~p~g~~~~~~---s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~--  339 (373)
T 2mad_H          265 RPGGWQQVAY---LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG--  339 (373)
T ss_pred             ecCceEeEEE---CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCC--
Confidence            433221 222   45888888876432       235799999998876 5666543222 23378888566665421  


Q ss_pred             CCeEEEEEcCCCcc
Q 006979          423 PSSVAKVTLDDHKL  436 (623)
Q Consensus       423 ~~~ly~~~l~~~~~  436 (623)
                      ...|+++|+++++.
T Consensus       340 ~~~V~ViD~~t~~v  353 (373)
T 2mad_H          340 TEVLHIYDAGAGDQ  353 (373)
T ss_pred             CCeEEEEECCCCCE
Confidence            25799999988874

>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans}

Probab=98.96  E-value=5.8e-09  Score=102.83  Aligned_cols=117  Identities=15%  Similarity=0.077  Sum_probs=79.4

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++...+.+.+        .+.|.||++||.+.  ....|...+..|++ +|.|+++|+||.|.+...     ..  
T Consensus        10 ~g~~l~y~~~g~~~--------~~~~~vvllHG~~~--~~~~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~-----~~--   71 (266)
T 2xua_A           10 NGTELHYRIDGERH--------GNAPWIVLSNSLGT--DLSMWAPQVAALSK-HFRVLRYDTRGHGHSEAP-----KG--   71 (266)
T ss_dssp             SSSEEEEEEESCSS--------SCCCEEEEECCTTC--CGGGGGGGHHHHHT-TSEEEEECCTTSTTSCCC-----SS--
T ss_pred             CCEEEEEEEcCCcc--------CCCCeEEEecCccC--CHHHHHHHHHHHhc-CeEEEEecCCCCCCCCCC-----CC--
Confidence            67788876664421        12478999999743  33456677778875 599999999997654321     11  


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                       ....++..+.+..++++  ...+++.++|||+||.+++.++ .+|++++++|...+..
T Consensus        72 -~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~  127 (266)
T 2xua_A           72 -PYTIEQLTGDVLGLMDT--LKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAA  127 (266)
T ss_dssp             -CCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCS
T ss_pred             -CCCHHHHHHHHHHHHHh--cCCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCC
Confidence             12233333333333322  1235899999999999999988 8999999999887653

>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A*

Probab=98.95  E-value=6.9e-09  Score=104.78  Aligned_cols=124  Identities=15%  Similarity=0.046  Sum_probs=80.3

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~  541 (623)
                      +...+... +|..++.....+.+          .|.||++||++.....   ......|...||.|+++|+||.|.+...
T Consensus        15 ~~~~~~~~-~g~~l~~~~~g~~~----------g~~vvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~   80 (317)
T 1wm1_A           15 DSGWLDTG-DGHRIYWELSGNPN----------GKPAVFIHGGPGGGIS---PHHRQLFDPERYKVLLFDQRGCGRSRPH   80 (317)
T ss_dssp             EEEEEECS-SSCEEEEEEEECTT----------SEEEEEECCTTTCCCC---GGGGGGSCTTTEEEEEECCTTSTTCBST
T ss_pred             eeeEEEcC-CCcEEEEEEcCCCC----------CCcEEEECCCCCcccc---hhhhhhccccCCeEEEECCCCCCCCCCC
Confidence            34456665 68777754443211          2458899998654321   1233445568999999999997654321


Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                            ........+++.+.+..++++  ++.+++.++||||||.+++.++ .+|++++++|...+.
T Consensus        81 ------~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~  139 (317)
T 1wm1_A           81 ------ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIF  139 (317)
T ss_dssp             ------TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred             ------cccccccHHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccC
Confidence                  011122344555555555443  2346899999999999999988 899999999987654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.95  E-value=5.2e-07  Score=90.64  Aligned_cols=268  Identities=11%  Similarity=0.022  Sum_probs=148.1

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ...+..+.|+| +..++ .-.   .+|...+|.....   +....+..        |..++.+..++++ ..+++...++
T Consensus        23 ~~~v~~~~~s~~~~~l~-s~~---~dg~i~iw~~~~~---~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~d~   87 (312)
T 4ery_A           23 TKAVSSVKFSPNGEWLA-SSS---ADKLIKIWGAYDG---KFEKTISG--------HKLGISDVAWSSDSNLLVSASDDK   87 (312)
T ss_dssp             SSCEEEEEECTTSSEEE-EEE---TTSCEEEEETTTC---CEEEEECC--------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCcEEEEEECCCCCEEE-Eee---CCCeEEEEeCCCc---ccchhhcc--------CCCceEEEEEcCCCCEEEEECCCC
Confidence            34567888998 55443 322   2467667755322   22222211        2223445666665 5566666788


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~  245 (623)
                      .|.++|+.++ .....+...    ........|+|+++.++....+         ..|.++|+.+++.  ...+......
T Consensus        88 ~i~vwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~--~~~~~~~~~~  151 (312)
T 4ery_A           88 TLKIWDVSSG-KCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTGKC--LKTLPAHSDP  151 (312)
T ss_dssp             EEEEEETTTC-CEEEEEECC----SSCEEEEEECSSSSEEEEEETT---------SCEEEEETTTCCE--EEEECCCSSC
T ss_pred             EEEEEECCCC-cEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCEE--EEEecCCCCc
Confidence            8999999876 223344332    2345667899999988776554         4588889988762  3344444445


Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW  325 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~  325 (623)
                      .....|+|||+.|+....+.        .|.++|+..+..  ...+.....    ..+....|+|||++++.... ++  
T Consensus       152 v~~~~~~~~~~~l~~~~~d~--------~i~~wd~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~-d~--  214 (312)
T 4ery_A          152 VSAVHFNRDGSLIVSSSYDG--------LCRIWDTASGQC--LKTLIDDDN----PPVSFVKFSPNGKYILAATL-DN--  214 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTS--------CEEEEETTTCCE--EEEECCSSC----CCEEEEEECTTSSEEEEEET-TT--
T ss_pred             EEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCce--eeEEeccCC----CceEEEEECCCCCEEEEEcC-CC--
Confidence            56678999999887665332        388889876632  122222222    34556889999995555544 34  


Q ss_pred             eEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-ecccCCcceE
Q 006979          326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDID  404 (623)
Q Consensus       326 ~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~~~~~v~  404 (623)
                      .|..+|..+++...........   .+..   ...+.   +.++.++++...+|.  |+++|+.+++.. .+......+.
T Consensus       215 ~i~iwd~~~~~~~~~~~~~~~~---~~~~---~~~~~---~~~~~~l~sg~~dg~--i~vwd~~~~~~~~~~~~h~~~v~  283 (312)
T 4ery_A          215 TLKLWDYSKGKCLKTYTGHKNE---KYCI---FANFS---VTGGKWIVSGSEDNL--VYIWNLQTKEIVQKLQGHTDVVI  283 (312)
T ss_dssp             EEEEEETTTTEEEEEECSSCCS---SSCC---CEEEE---CSSSCEEEECCTTSC--EEEEETTTCCEEEEECCCSSCEE
T ss_pred             eEEEEECCCCcEEEEEEecCCc---eEEE---EEEEE---eCCCcEEEEECCCCE--EEEEECCCchhhhhhhccCCcEE
Confidence            4666677777644333211100   0000   00111   134445555555565  455677766543 4443333344


Q ss_pred             ee--eecCCEEE
Q 006979          405 NI--TLGNDCLF  414 (623)
Q Consensus       405 ~~--~~~~~~~~  414 (623)
                      .+  ++++..++
T Consensus       284 ~~~~~p~~~~l~  295 (312)
T 4ery_A          284 STACHPTENIIA  295 (312)
T ss_dssp             EEEECSSSSEEE
T ss_pred             EEeecCcCCceE
Confidence            44  45555443

>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A

Probab=98.95  E-value=1.2e-10  Score=127.32  Aligned_cols=127  Identities=18%  Similarity=0.174  Sum_probs=83.7

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc---C----CHHhHHHHcC-ceEEEEECCCC-CCCCchhHHHh
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---L----NLSIQYWTSR-GWAFVDVNYGG-STGYGREFRER  545 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~---~----~~~~~~~a~~-G~~v~~~d~rG-s~~~g~~~~~~  545 (623)
                      ++..+|.|.... .  .++++|+||++|||........   +    ....+.|+.+ |++|+.+|||- .-|+.......
T Consensus        81 l~lnv~~P~~~~-~--~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~~~~~~  157 (579)
T 2bce_A           81 LYLNIWVPQGRK-E--VSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDSN  157 (579)
T ss_dssp             CEEEEEEEECSS-S--CCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTT
T ss_pred             CEEEEEECCCCC-C--CCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCcCCCCC
Confidence            555667776421 0  1457899999999964322211   1    1224556654 79999999993 21221110001


Q ss_pred             hccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhc---CCCceeEEEecccC
Q 006979          546 LLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGV  607 (623)
Q Consensus       546 ~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~---~~~~f~a~v~~~g~  607 (623)
                      .   .+..-..|+.+|++|+.++-   -.|++||.|+|+|+||+++..++.   ...+|+++|+.+|.
T Consensus       158 ~---pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~  222 (579)
T 2bce_A          158 L---PGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV  222 (579)
T ss_dssp             C---CCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred             C---CCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence            1   22234789999999998752   379999999999999999998873   35799999999885

>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A

Probab=98.95  E-value=4.1e-09  Score=105.15  Aligned_cols=112  Identities=11%  Similarity=0.006  Sum_probs=80.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++...+.            ..|.||++||.+..  ...|...+..|+++ |.|+.+|+||.|.....     .   
T Consensus        18 ~g~~l~~~~~g------------~~~~vv~lHG~~~~--~~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~-----~---   74 (301)
T 3kda_A           18 DGVKLHYVKGG------------QGPLVMLVHGFGQT--WYEWHQLMPELAKR-FTVIAPDLPGLGQSEPP-----K---   74 (301)
T ss_dssp             TTEEEEEEEEE------------SSSEEEEECCTTCC--GGGGTTTHHHHTTT-SEEEEECCTTSTTCCCC-----S---
T ss_pred             CCeEEEEEEcC------------CCCEEEEECCCCcc--hhHHHHHHHHHHhc-CeEEEEcCCCCCCCCCC-----C---
Confidence            68888855442            23689999999543  34567778889888 99999999997765432     1   


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCc-eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~r-v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      .....+|..+.+..+++.  .+.++ +.++|||+||.+++.++ .+|++++++|...|.
T Consensus        75 ~~~~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~  131 (301)
T 3kda_A           75 TGYSGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAP  131 (301)
T ss_dssp             SCSSHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSC
T ss_pred             CCccHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccC
Confidence            122344444444433332  12356 99999999999999988 899999999999885

>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31

Probab=98.95  E-value=3.4e-09  Score=98.74  Aligned_cols=96  Identities=11%  Similarity=0.017  Sum_probs=71.1

Q ss_pred             CCEEEEecCCCCCcccCcCCHHh-HHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~-~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      .|.||++||.+..... .|.... ..|+++||.|+.+|+|.+..               .+.++..+.+..+.+.  . .
T Consensus         4 ~p~vv~~HG~~~~~~~-~~~~~~~~~l~~~g~~v~~~d~~~~~~---------------~~~~~~~~~~~~~~~~--~-~   64 (192)
T 1uxo_A            4 TKQVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQHT--L-H   64 (192)
T ss_dssp             CCEEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGGG--C-C
T ss_pred             CCEEEEEcCCCCCcch-hHHHHHHHHHHhCCcEEEEecCCCCCC---------------CCHHHHHHHHHHHHHh--c-c
Confidence            5889999998543321 444444 46889999999999993221               1355555555555444  2 4


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCC--ceeEEEecccCCC
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRD--TFKAGASLYGVSI  609 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g~~d  609 (623)
                      +++.++|||+||++++.++ .+|+  .++++|..+|...
T Consensus        65 ~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~  103 (192)
T 1uxo_A           65 ENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAK  103 (192)
T ss_dssp             TTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSS
T ss_pred             CCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCC
Confidence            7999999999999999998 7898  9999999998765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.95  E-value=2e-07  Score=93.51  Aligned_cols=226  Identities=12%  Similarity=0.130  Sum_probs=128.9

Q ss_pred             EEEeC--CEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          150 FRIFG--DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       150 ~~~s~--d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      ..+++  +.++|++...++|+++|++++  ..+.+..     ......+.++|+|+.++. ..          ..|+++|
T Consensus        18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~--~~~~~~~-----~~~~~~i~~~~dG~l~v~-~~----------~~l~~~d   79 (297)
T 3g4e_A           18 PVWEEVSNSLLFVDIPAKKVCRWDSFTK--QVQRVTM-----DAPVSSVALRQSGGYVAT-IG----------TKFCALN   79 (297)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEEC-----SSCEEEEEEBTTSSEEEE-ET----------TEEEEEE
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCC--cEEEEeC-----CCceEEEEECCCCCEEEE-EC----------CeEEEEE
Confidence            34444  589999988889999999876  4444433     234556789999994443 21          4699999


Q ss_pred             cCCCCcccceecccC---C--CcccceeeCCCCCEEEEEEecCCCC----CCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979          228 LNGQNIQEPKVLVSG---S--DFYAFPRMDPRGERMAWIEWHHPNM----PWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (623)
Q Consensus       228 l~~g~~~~~~~l~~~---~--~~~~~p~wSPDG~~la~~~~~~~~~----p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~  298 (623)
                      +++++   .+.+...   .  .......++|||+ |++..+.....    ......||.++.++.    ...+....   
T Consensus        80 ~~~g~---~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----~~~~~~~~---  148 (297)
T 3g4e_A           80 WKEQS---AVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH----VKKYFDQV---  148 (297)
T ss_dssp             TTTTE---EEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC----EEEEEEEE---
T ss_pred             CCCCc---EEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC----EEEEeecc---
Confidence            99887   4444322   1  1234467999998 66655432110    012457888876532    22222221   


Q ss_pred             ccccCcCceeCCCCcEEEEEeCCCCeeeEEEEec--CCCeEE--E-EeecccccccccccccCcceeEEeecCCCCEEEE
Q 006979          299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE--SNNEVL--A-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC  373 (623)
Q Consensus       299 ~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~--~~~~~~--~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~  373 (623)
                        .....+.|+|||+.+|+++.  ....|++++.  .++...  + +.........      .+.+.+-   ++| .|++
T Consensus       149 --~~pngi~~spdg~~lyv~~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~------p~g~~~d---~~G-~lwv  214 (297)
T 3g4e_A          149 --DISNGLDWSLDHKIFYYIDS--LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI------PDGMCID---AEG-KLWV  214 (297)
T ss_dssp             --SBEEEEEECTTSCEEEEEEG--GGTEEEEEEECTTTCCEEEEEEEEECCGGGCE------EEEEEEB---TTS-CEEE
T ss_pred             --ccccceEEcCCCCEEEEecC--CCCcEEEEeccCCCCcccCcEEEEECCCCCCC------CCeeEEC---CCC-CEEE
Confidence              23457899999994445554  2345666664  555432  2 2211100011      1233333   244 5666


Q ss_pred             EEEECCeEEEEEEeCCCCc-eeecccCCcceEee--e-ecCCEEEEEEecC
Q 006979          374 SYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI--T-LGNDCLFVEGASG  420 (623)
Q Consensus       374 ~~~~~g~~~L~~~d~~~~~-~~~lt~~~~~v~~~--~-~~~~~~~~~~~s~  420 (623)
                      +....  ..|+++|+++++ +..+..+...+..+  . ++++++|++.+..
T Consensus       215 a~~~~--~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          215 ACYNG--GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEETT--TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEcCC--CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            55433  358899998555 45666554444444  4 6778888877643

>1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35

Probab=98.95  E-value=3.4e-09  Score=104.36  Aligned_cols=102  Identities=15%  Similarity=0.087  Sum_probs=70.7

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|.||++||.+.  ....|...+..|+++||.|+++|+||.|.+...-         ....+|..+.+..++++-.+++.
T Consensus        16 ~~~vvllHG~~~--~~~~w~~~~~~L~~~~~~vi~~Dl~GhG~S~~~~---------~~~~~~~a~~l~~~l~~l~~~~~   84 (264)
T 1r3d_A           16 TPLVVLVHGLLG--SGADWQPVLSHLARTQCAALTLDLPGHGTNPERH---------CDNFAEAVEMIEQTVQAHVTSEV   84 (264)
T ss_dssp             BCEEEEECCTTC--CGGGGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCTTS
T ss_pred             CCcEEEEcCCCC--CHHHHHHHHHHhcccCceEEEecCCCCCCCCCCC---------ccCHHHHHHHHHHHHHHhCcCCC
Confidence            378999999843  3446777888888789999999999976654310         11234444444444443223222


Q ss_pred             ceEEEEcChHHHHHHH---Hh-cCCCceeEEEecccC
Q 006979          575 RLCITGGSAGGYTTLA---AL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~---~~-~~~~~f~a~v~~~g~  607 (623)
                      ++.++||||||.+++.   ++ .+|++++++|...+.
T Consensus        85 p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~  121 (264)
T 1r3d_A           85 PVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGH  121 (264)
T ss_dssp             EEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCC
T ss_pred             ceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCC
Confidence            4999999999999999   77 789999999987654

>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica}

Probab=98.95  E-value=3.8e-09  Score=106.22  Aligned_cols=115  Identities=11%  Similarity=0.018  Sum_probs=79.2

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI  552 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~  552 (623)
                      ..++....-|.         ...|.||++||.+..  ...|...+..|+++||.|+++|+||.|.+...-   ....+..
T Consensus        33 ~~l~y~~~G~~---------~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~---~~~~~~~   98 (297)
T 2xt0_A           33 LRMHYVDEGPR---------DAEHTFLCLHGEPSW--SFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPT---DDAVYTF   98 (297)
T ss_dssp             CCEEEEEESCT---------TCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTTSCEES---CGGGCCH
T ss_pred             eEEEEEEccCC---------CCCCeEEEECCCCCc--ceeHHHHHHHHHhCCcEEEEeCCCCCCCCCCCC---CcccCCH
Confidence            77876555331         112578899998543  345677788899999999999999976553210   0011111


Q ss_pred             -chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          553 -VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       553 -~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                       ...+|+.+.++.+.      .+++.++||||||.+++.++ .+|+++++.|...+.
T Consensus        99 ~~~a~dl~~ll~~l~------~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~  149 (297)
T 2xt0_A           99 GFHRRSLLAFLDALQ------LERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTA  149 (297)
T ss_dssp             HHHHHHHHHHHHHHT------CCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHhC------CCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCC
Confidence             12345555555442      36899999999999999988 899999999988763

>1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7

Probab=98.94  E-value=8.7e-09  Score=103.82  Aligned_cols=124  Identities=15%  Similarity=0.044  Sum_probs=79.8

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~  541 (623)
                      +...+... +|..++...+-+.          ..|.||++||++.....   ......|..+||.|+++|+||.|.+...
T Consensus        12 ~~~~~~~~-~g~~l~y~~~G~~----------~g~pvvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~   77 (313)
T 1azw_A           12 QQGSLKVD-DRHTLYFEQCGNP----------HGKPVVMLHGGPGGGCN---DKMRRFHDPAKYRIVLFDQRGSGRSTPH   77 (313)
T ss_dssp             EEEEEECS-SSCEEEEEEEECT----------TSEEEEEECSTTTTCCC---GGGGGGSCTTTEEEEEECCTTSTTSBST
T ss_pred             ccceEEcC-CCCEEEEEecCCC----------CCCeEEEECCCCCcccc---HHHHHhcCcCcceEEEECCCCCcCCCCC
Confidence            34456655 6777775444321          12458899998654322   2233445568999999999996654321


Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                            ........+++.+.+..++++  ...+++.++||||||.+++.++ .+|++++++|...+.
T Consensus        78 ------~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~  136 (313)
T 1azw_A           78 ------ADLVDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF  136 (313)
T ss_dssp             ------TCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred             ------cccccccHHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence                  011122344444444444443  1236899999999999999998 899999999987664

>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A

Probab=98.94  E-value=3.9e-09  Score=112.98  Aligned_cols=101  Identities=16%  Similarity=0.084  Sum_probs=75.4

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      |.||++||++..  ...|...+..|+++||.|+.+|+||.|......     ..+.. ...+|+.++++++      +.+
T Consensus        25 p~VV~lHG~~~~--~~~~~~l~~~La~~Gy~Vi~~D~rG~G~S~~~~-----~~~s~~~~a~dl~~~l~~l------~~~   91 (456)
T 3vdx_A           25 VPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGFGQSSQPT-----TGYDYDTFAADLNTVLETL------DLQ   91 (456)
T ss_dssp             EEEEEECCTTCC--GGGGTTHHHHHHHHTEEEEEECCTTSTTSCCCS-----SCCSHHHHHHHHHHHHHHH------TCC
T ss_pred             CEEEEECCCCCc--HHHHHHHHHHHHHCCcEEEEECCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHh------CCC
Confidence            789999999543  345677888999999999999999976654321     11111 1245666666665      346


Q ss_pred             ceEEEEcChHHHHHHHHh-cC-CCceeEEEecccCCC
Q 006979          575 RLCITGGSAGGYTTLAAL-AF-RDTFKAGASLYGVSI  609 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~-~~~f~a~v~~~g~~d  609 (623)
                      +|.++|||+||++++.++ .+ |+.++++|...|..+
T Consensus        92 ~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~  128 (456)
T 3vdx_A           92 DAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEP  128 (456)
T ss_dssp             SEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCS
T ss_pred             CeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCccc
Confidence            999999999999888777 55 899999999998764

>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A

Probab=98.94  E-value=6.9e-09  Score=103.90  Aligned_cols=118  Identities=14%  Similarity=0.034  Sum_probs=78.9

Q ss_pred             CC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCC-CCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhcc
Q 006979          471 PG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG  548 (623)
Q Consensus       471 dg-~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg-~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~  548 (623)
                      +| ..++....-          .++.|.||++||. |+......|...+..|+++ |.|+++|+||.|.+...-     .
T Consensus        21 ~g~~~l~y~~~G----------~g~~~~vvllHG~~pg~~~~~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~~-----~   84 (291)
T 2wue_A           21 DGPLKLHYHEAG----------VGNDQTVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPGYGHSDKRA-----E   84 (291)
T ss_dssp             SSEEEEEEEEEC----------TTCSSEEEEECCCCTTCCHHHHTTTTHHHHTTT-SEEEEECCTTSTTSCCCS-----C
T ss_pred             CCcEEEEEEecC----------CCCCCcEEEECCCCCccchHHHHHHHHHHHHhc-CEEEEECCCCCCCCCCCC-----C
Confidence            67 777754432          1223689999997 4333344566667778766 999999999976543310     0


Q ss_pred             CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          549 RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       549 ~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                        .....++..+.+..++++  .+.+++.|+|||+||.+++.++ .+|++++++|...+..
T Consensus        85 --~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~  141 (291)
T 2wue_A           85 --HGQFNRYAAMALKGLFDQ--LGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGG  141 (291)
T ss_dssp             --CSSHHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSS
T ss_pred             --CCcCHHHHHHHHHHHHHH--hCCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCC
Confidence              012344444433333332  1236899999999999999998 8999999999988753

>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A*

Probab=98.94  E-value=3.8e-09  Score=104.79  Aligned_cols=101  Identities=16%  Similarity=0.121  Sum_probs=73.7

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC-CCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~-~~~d~~  574 (623)
                      |.||++||.+..  ...|...+..|+++||.|+++|+||.|.+....    .   ....+++..+.+..+++. +.  .+
T Consensus         5 ~~vvllHG~~~~--~~~w~~~~~~L~~~g~rVia~Dl~G~G~S~~~~----~---~~~~~~~~a~dl~~~l~~l~~--~~   73 (273)
T 1xkl_A            5 KHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAASGTDLRKI----E---ELRTLYDYTLPLMELMESLSA--DE   73 (273)
T ss_dssp             CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTTSTTCCCCG----G---GCCSHHHHHHHHHHHHHTSCS--SS
T ss_pred             CeEEEECCCCCC--cchHHHHHHHHHhCCCEEEEecCCCCCCCccCc----c---cccCHHHHHHHHHHHHHHhcc--CC
Confidence            679999998533  335777888999999999999999976553211    0   112355555544444443 21  36


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ++.++||||||++++.++ .+|++++++|...+.
T Consensus        74 ~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~  107 (273)
T 1xkl_A           74 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAF  107 (273)
T ss_dssp             CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred             CEEEEecCHHHHHHHHHHHhChHhheEEEEEecc
Confidence            999999999999999988 899999999987763

>2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2}

Probab=98.93  E-value=5.7e-10  Score=114.89  Aligned_cols=111  Identities=18%  Similarity=0.243  Sum_probs=79.3

Q ss_pred             CCEEEEecCCCCCccc---CcCC-----------HHhHHHHcCceEEEEECCCCCCCCchhHHHhh--ccCCc-cchHHH
Q 006979          495 PPLLVKSHGGPTSEAR---GILN-----------LSIQYWTSRGWAFVDVNYGGSTGYGREFRERL--LGRWG-IVDVND  557 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~---~~~~-----------~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~--~~~~g-~~~~~D  557 (623)
                      .|.||++||.+.....   ..|.           ..++.|+++||.|+.+|+||.|..........  ...+. ....+|
T Consensus        50 ~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~d  129 (354)
T 2rau_A           50 NDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWISD  129 (354)
T ss_dssp             EEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGGGGGGTTCSHHHHHHH
T ss_pred             CCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccccccccCCcHHHHHHH
Confidence            4789999998654431   1222           57788999999999999999665432110000  00222 223578


Q ss_pred             HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC-CCceeEEEecccC
Q 006979          558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF-RDTFKAGASLYGV  607 (623)
Q Consensus       558 ~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~-~~~f~a~v~~~g~  607 (623)
                      +.++++++.++  .+.+++.++|||+||++++.++ .+ |++++++|+.++.
T Consensus       130 ~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~  179 (354)
T 2rau_A          130 IKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGG  179 (354)
T ss_dssp             HHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCS
T ss_pred             HHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEeccc
Confidence            88999998765  3457999999999999999988 77 9999999998553

>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A

Probab=98.93  E-value=1e-09  Score=107.07  Aligned_cols=99  Identities=18%  Similarity=0.182  Sum_probs=70.8

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccc-hHHHHHHHHHHHHhCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~-~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      |.||++||.+..  ...|...+..|+++||.|+++|+||.|.....     ...+... ..+|+.++++++.+.+   .+
T Consensus        17 ~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~GhG~s~~~-----~~~~~~~~~~~d~~~~~~~l~~~~---~~   86 (247)
T 1tqh_A           17 RAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKGHGVPPEE-----LVHTGPDDWWQDVMNGYEFLKNKG---YE   86 (247)
T ss_dssp             CEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTTSSSCHHH-----HTTCCHHHHHHHHHHHHHHHHHHT---CC
T ss_pred             cEEEEECCCCCC--hHHHHHHHHHHHHCCCEEEecccCCCCCCHHH-----hcCCCHHHHHHHHHHHHHHHHHcC---CC
Confidence            578899998433  33566778889999999999999997643211     1112222 2466777777777654   36


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                      ++.++||||||.+++.++ .+|  ++++|...+
T Consensus        87 ~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~  117 (247)
T 1tqh_A           87 KIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCA  117 (247)
T ss_dssp             CEEEEEETHHHHHHHHHHTTSC--CSCEEEESC
T ss_pred             eEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcc
Confidence            899999999999999988 777  777775443

>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A

Probab=98.93  E-value=1.8e-09  Score=99.73  Aligned_cols=100  Identities=20%  Similarity=0.193  Sum_probs=75.0

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCce---EEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGW---AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~---~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~  571 (623)
                      .|.||++||...  ....|...++.|+++||   .|+.+|+||.+....            ...+++.+.++.++++  .
T Consensus         3 ~~~vv~~HG~~~--~~~~~~~~~~~l~~~G~~~~~v~~~d~~g~g~s~~------------~~~~~~~~~~~~~~~~--~   66 (181)
T 1isp_A            3 HNPVVMVHGIGG--ASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY------------NNGPVLSRFVQKVLDE--T   66 (181)
T ss_dssp             CCCEEEECCTTC--CGGGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH------------HHHHHHHHHHHHHHHH--H
T ss_pred             CCeEEEECCcCC--CHhHHHHHHHHHHHcCCCCccEEEEecCCCCCchh------------hhHHHHHHHHHHHHHH--c
Confidence            367899999853  34466778899999998   599999999665432            1234555555544443  2


Q ss_pred             CCCceEEEEcChHHHHHHHHh-cC--CCceeEEEecccCCCH
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-AF--RDTFKAGASLYGVSIP  610 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~~--~~~f~a~v~~~g~~d~  610 (623)
                      +.+++.++|||+||.+++.++ .+  |+.++++|..+|...+
T Consensus        67 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~  108 (181)
T 1isp_A           67 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRL  108 (181)
T ss_dssp             CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGG
T ss_pred             CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCcccc
Confidence            457999999999999999998 66  8899999999998654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.93  E-value=1.5e-07  Score=97.44  Aligned_cols=169  Identities=7%  Similarity=-0.074  Sum_probs=87.1

Q ss_pred             eEEEeCC--EEEEEeCCCCcEEEEeCC-CCCCCceecCCCCCCCCeeecceeeCCCCCEE-EEEEeccCCCCC-C----c
Q 006979          149 AFRIFGD--TVIFSNYKDQRLYKHSID-SKDSSPLPITPDYGEPLVSYADGIFDPRFNRY-VTVREDRRQDAL-N----S  219 (623)
Q Consensus       149 ~~~~s~d--~l~f~~~~~~~l~~~d~~-~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l-~~v~~~~~~~~~-~----~  219 (623)
                      ..++++|  .++..+. + .|.+++++ ++  ...++.... . ........|||||+++ +++......... .    .
T Consensus        44 ~~a~spdg~~l~~~~~-~-~v~~~~~~~~g--~~~~~~~~~-~-~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           44 WMTFDHERKNIYGAAM-K-KWSSFAVKSPT--EIVHEASHP-I-GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             EEEECTTSSEEEEEEB-T-EEEEEEEEETT--EEEEEEEEE-C-CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             EEEECCCCCEEEEEcc-c-eEEEEEECCCC--CEEEeeEee-c-CCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            4555655  3554443 3 68888875 55  333332110 0 0113457899999974 344320000000 0    0


Q ss_pred             eeEEEEEEcC-CCCcccceecc----cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec-CCCceeeeEEEc
Q 006979          220 TTEIVAIALN-GQNIQEPKVLV----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVA  293 (623)
Q Consensus       220 ~~~L~~idl~-~g~~~~~~~l~----~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~-~~~~~~~~~~~~  293 (623)
                      ...+.+++++ .|+.  ...+.    ........+.|||||++|+... ..      ...|++++++ ++. +.....+.
T Consensus       118 ~g~v~v~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~-~~------~~~v~~~~~~~~g~-~~~~~~~~  187 (365)
T 1jof_A          118 AGYGNVFSVSETGKL--EKNVQNYEYQENTGIHGMVFDPTETYLYSAD-LT------ANKLWTHRKLASGE-VELVGSVD  187 (365)
T ss_dssp             CCEEEEEEECTTCCE--EEEEEEEECCTTCCEEEEEECTTSSEEEEEE-TT------TTEEEEEEECTTSC-EEEEEEEE
T ss_pred             CceEEEEccCCCCcC--cceEeeEEeCCCCcceEEEECCCCCEEEEEc-CC------CCEEEEEEECCCCC-EEEeeeEe
Confidence            1345566664 2441  12222    1234456688999999886553 21      2368999987 442 11111121


Q ss_pred             --CCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE
Q 006979          294 --GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (623)
Q Consensus       294 --~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~  337 (623)
                        ...    ..+..+.|+|||+.+|+.+...+.-.+|.+|..+++.
T Consensus       188 ~~~~g----~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  229 (365)
T 1jof_A          188 APDPG----DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             CSSTT----CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             cCCCC----CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence              111    3455779999999555554425666777777766654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.92  E-value=1.3e-07  Score=95.99  Aligned_cols=189  Identities=6%  Similarity=0.004  Sum_probs=116.3

Q ss_pred             eEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       149 ~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      ..+++++ ..+++...++.+.++++.++ .....+...    ........|+|||++|+....+         ..|.++|
T Consensus       127 ~~~~spdg~~l~~g~~dg~v~i~~~~~~-~~~~~~~~~----~~~v~~~~~spdg~~lasg~~d---------g~i~iwd  192 (321)
T 3ow8_A          127 TLAFSPDSQYLATGTHVGKVNIFGVESG-KKEYSLDTR----GKFILSIAYSPDGKYLASGAID---------GIINIFD  192 (321)
T ss_dssp             CEEECTTSSEEEEECTTSEEEEEETTTC-SEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------SCEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEEcCCC-ceeEEecCC----CceEEEEEECCCCCEEEEEcCC---------CeEEEEE
Confidence            4556655 45566667888999999876 222333322    2345678899999998876554         4588889


Q ss_pred             cCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (623)
Q Consensus       228 l~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
                      +.+++.  +..+......+...+|||||++|+....|.        .|.++|+..+.   ....+.+..    ..+..+.
T Consensus       193 ~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg--------~i~iwd~~~~~---~~~~~~~h~----~~v~~~~  255 (321)
T 3ow8_A          193 IATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDG--------YIKIYDVQHAN---LAGTLSGHA----SWVLNVA  255 (321)
T ss_dssp             TTTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTS--------CEEEEETTTCC---EEEEECCCS----SCEEEEE
T ss_pred             CCCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCC--------eEEEEECCCcc---eeEEEcCCC----CceEEEE
Confidence            988762  333443334456788999999887665332        38888987663   334455544    4567889


Q ss_pred             eCCCCcEEEEEeCCCCeeeEEEEecCCCeEE-EEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       308 ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      |+|||++++.... ++.  |..+|..+++.. .+......+....|.+            +++.| ++...+|.-+||
T Consensus       256 ~sp~~~~l~s~s~-D~~--v~iwd~~~~~~~~~~~~h~~~v~~v~~s~------------~g~~l-~s~~~d~~i~vw  317 (321)
T 3ow8_A          256 FCPDDTHFVSSSS-DKS--VKVWDVGTRTCVHTFFDHQDQVWGVKYNG------------NGSKI-VSVGDDQEIHIY  317 (321)
T ss_dssp             ECTTSSEEEEEET-TSC--EEEEETTTTEEEEEECCCSSCEEEEEECT------------TSSEE-EEEETTCCEEEE
T ss_pred             ECCCCCEEEEEeC-CCc--EEEEeCCCCEEEEEEcCCCCcEEEEEECC------------CCCEE-EEEeCCCeEEEE
Confidence            9999995555444 354  555677676543 3322222333333332            55544 455566766665

>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans}

Probab=98.92  E-value=6e-09  Score=103.71  Aligned_cols=102  Identities=12%  Similarity=0.038  Sum_probs=73.4

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+.......|...+..|+ +||.|+.+|+||.|....       ........+|+.+.+..++++-  ..++
T Consensus        42 p~vv~lHG~G~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~-------~~~~~~~~~~~~~~l~~~l~~~--~~~~  111 (292)
T 3l80_A           42 PCFVFLSGAGFFSTADNFANIIDKLP-DSIGILTIDAPNSGYSPV-------SNQANVGLRDWVNAILMIFEHF--KFQS  111 (292)
T ss_dssp             SEEEEECCSSSCCHHHHTHHHHTTSC-TTSEEEEECCTTSTTSCC-------CCCTTCCHHHHHHHHHHHHHHS--CCSE
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHh-hcCeEEEEcCCCCCCCCC-------CCcccccHHHHHHHHHHHHHHh--CCCC
Confidence            89999997433333345666676676 699999999999665431       1111234666666666555542  2359


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +.++|||+||.+++.++ .+|++++++|...|.
T Consensus       112 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~  144 (292)
T 3l80_A          112 YLLCVHSIGGFAALQIMNQSSKACLGFIGLEPT  144 (292)
T ss_dssp             EEEEEETTHHHHHHHHHHHCSSEEEEEEEESCC
T ss_pred             eEEEEEchhHHHHHHHHHhCchheeeEEEECCC
Confidence            99999999999999998 899999999999843

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.92  E-value=3.2e-07  Score=96.23  Aligned_cols=277  Identities=11%  Similarity=0.066  Sum_probs=151.7

Q ss_pred             CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcEEE
Q 006979           92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYK  169 (623)
Q Consensus        92 ~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l~~  169 (623)
                      ..+.++| +..++....    +|...+|.....   +....+... ..        .....++++ ..+++...++.|.+
T Consensus        60 ~~~~~s~~g~~l~~~~~----d~~v~i~d~~~~---~~~~~~~~~-~~--------~~~~~~~~~~~~l~~~~~dg~i~i  123 (420)
T 3vl1_A           60 KGNTFEKVGSHLYKARL----DGHDFLFNTIIR---DGSKMLKRA-DY--------TAVDTAKLQMRRFILGTTEGDIKV  123 (420)
T ss_dssp             TTCEEEEEETTEEEEEE----TTEEEEEECCSE---ETTTTSCSC-CE--------EEEEEECSSSCEEEEEETTSCEEE
T ss_pred             cceeeeecCCeEEEEEc----CCcEEEEEeccc---ceeeEEecC-Cc--------eEEEEEecCCCEEEEEECCCCEEE
Confidence            3678888 777765542    366666654322   222222111 00        011122333 44555557788999


Q ss_pred             EeCCCCCCCceec-CCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccc
Q 006979          170 HSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF  248 (623)
Q Consensus       170 ~d~~~g~~~~~~L-t~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~  248 (623)
                      +|+.++  ..... ...    ........|+|+|+.|+....+         ..|.++|+.+++.  +..+......+..
T Consensus       124 wd~~~~--~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~d---------~~i~iwd~~~~~~--~~~~~~h~~~v~~  186 (420)
T 3vl1_A          124 LDSNFN--LQREIDQAH----VSEITKLKFFPSGEALISSSQD---------MQLKIWSVKDGSN--PRTLIGHRATVTD  186 (420)
T ss_dssp             ECTTSC--EEEEETTSS----SSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTCCC--CEEEECCSSCEEE
T ss_pred             EeCCCc--ceeeecccc----cCccEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCcC--ceEEcCCCCcEEE
Confidence            999876  33333 222    3456778999999988776553         5689999988752  4445444455667


Q ss_pred             eeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCC-C-C------------------ccccCcCcee
Q 006979          249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-P-T------------------IVESPTEPKW  308 (623)
Q Consensus       249 p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~-~-~------------------~~~~~~~~~w  308 (623)
                      ..|+|||++|+....+.        .|.++|+..+.   ....+.... . .                  -...+..+.|
T Consensus       187 ~~~~~~~~~l~s~~~d~--------~v~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~  255 (420)
T 3vl1_A          187 IAIIDRGRNVLSASLDG--------TIRLWECGTGT---TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF  255 (420)
T ss_dssp             EEEETTTTEEEEEETTS--------CEEEEETTTTE---EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred             EEEcCCCCEEEEEcCCC--------cEEEeECCCCc---eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence            88999999988666443        27777877652   222222110 0 0                  0034567889


Q ss_pred             CCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec--ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL--DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~--~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                      +|||++++.... +|.  |..+|+.+++.......  ...+....|.            |+++.++++...+|.  |.++
T Consensus       256 s~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~------------~~~~~~l~~g~~dg~--i~vw  318 (420)
T 3vl1_A          256 GTYGKYVIAGHV-SGV--ITVHNVFSKEQTIQLPSKFTCSCNSLTVD------------GNNANYIYAGYENGM--LAQW  318 (420)
T ss_dssp             SCTTEEEEEEET-TSC--EEEEETTTCCEEEEECCTTSSCEEEEEEC------------SSCTTEEEEEETTSE--EEEE
T ss_pred             cCCCCEEEEEcC-CCe--EEEEECCCCceeEEcccccCCCceeEEEe------------CCCCCEEEEEeCCCe--EEEE
Confidence            999985555554 454  55667766653322221  1222223333            266646666666665  4455


Q ss_pred             eCCCCc--eeeccc-CCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCC
Q 006979          387 DDFGHS--LSLLDI-PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD  433 (623)
Q Consensus       387 d~~~~~--~~~lt~-~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~  433 (623)
                      |+.+++  +..+.. ....+..+ .++ +.++++++.   ...+...++..
T Consensus       319 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~---d~~v~iw~~~~  365 (420)
T 3vl1_A          319 DLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGF---DTSIKLDIISD  365 (420)
T ss_dssp             ETTCTTSCSEEEEESTTSCEEEEEEET-TEEEEEETT---TEEEEEEEECC
T ss_pred             EcCCCcCchhhhhccCCCCceEEEeCC-CCEEEEecC---CccEEEEeccC
Confidence            776553  344443 23335555 444 444444432   23456666554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.92  E-value=3.7e-07  Score=100.11  Aligned_cols=228  Identities=13%  Similarity=0.088  Sum_probs=134.6

Q ss_pred             eEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       149 ~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      +.+++++ ..+++...++.|.++++.+.  ....+...    ........++|+|++|+....+         ..+.++|
T Consensus       308 ~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~----~~~v~~~~~s~~g~~l~~~~~d---------g~v~~~~  372 (577)
T 2ymu_A          308 GVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGH----SSSVWGVAFSPDGQTIASASDD---------KTVKLWN  372 (577)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCC----CCCEEEEEECCCCCEEEEEeCC---------CEEEEEc
Confidence            4455555 45555557788999998754  44555432    3345567899999998876543         4577778


Q ss_pred             cCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (623)
Q Consensus       228 l~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
                      ..+..   ...+......+...+|||||++|+....+        ..|.+++..+.    ....+.+..    ..+....
T Consensus       373 ~~~~~---~~~~~~~~~~v~~~~~s~dg~~l~~~~~d--------~~v~~~~~~~~----~~~~~~~~~----~~v~~~~  433 (577)
T 2ymu_A          373 RNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASDD--------KTVKLWNRNGQ----LLQTLTGHS----SSVWGVA  433 (577)
T ss_dssp             TTCCE---EEEEECCSSCEEEEEECTTSSCEEEEETT--------SEEEEECTTCC----EEEEEECCS----SCEEEEE
T ss_pred             CCCCE---EEEecCCCCCeEEEEECCCCCEEEEEeCC--------CEEEEEeCCCC----EEEEecCCC----CCeEEEE
Confidence            75543   44454444445567899999999876533        24777775433    333444444    4566789


Q ss_pred             eCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       308 ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                      |+||++++..... ++.  |..+|..+...+.+......+....|+            |+++.|+ +...++.-+|  +|
T Consensus       434 ~s~d~~~l~~~~~-d~~--v~~w~~~~~~~~~~~~~~~~v~~~~~s------------pd~~~la-s~~~d~~i~i--w~  495 (577)
T 2ymu_A          434 FSPDDQTIASASD-DKT--VKLWNRNGQLLQTLTGHSSSVRGVAFS------------PDGQTIA-SASDDKTVKL--WN  495 (577)
T ss_dssp             ECTTSSEEEEEET-TSE--EEEEETTSCEEEEEECCSSCEEEEEEC------------TTSCEEE-EEETTSEEEE--EE
T ss_pred             ECCCCCEEEEEcC-CCE--EEEEECCCCEEEEEcCCCCCEEEEEEc------------CCCCEEE-EEeCCCEEEE--Ec
Confidence            9999995544444 344  445566555555555433333333333            2666544 4445665444  56


Q ss_pred             CCCCceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 006979          388 DFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (623)
Q Consensus       388 ~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~  432 (623)
                      .++..++.+......+..+  ++++..++ +++..   ..|...+..
T Consensus       496 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-s~~~d---g~v~lwd~~  538 (577)
T 2ymu_A          496 RNGQLLQTLTGHSSSVRGVAFSPDGQTIA-SASDD---KTVKLWNRN  538 (577)
T ss_dssp             TTSCEEEEEECCSSCEEEEEECTTSSCEE-EEETT---SEEEEECTT
T ss_pred             CCCCEEEEEeCCCCCEEEEEEcCCCCEEE-EEECc---CEEEEEeCC
Confidence            7666666666555556655  56666544 33322   346666653

>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A

Probab=98.91  E-value=4e-09  Score=106.78  Aligned_cols=115  Identities=15%  Similarity=0.094  Sum_probs=79.3

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI  552 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~  552 (623)
                      ..++....-|.         ..-|.||++||.+...  ..|...+..|+++||.|+++|.||.|.+...-   ....+..
T Consensus        34 ~~l~y~~~G~~---------~~g~~vvllHG~~~~~--~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~---~~~~y~~   99 (310)
T 1b6g_A           34 LRAHYLDEGNS---------DAEDVFLCLHGEPTWS--YLYRKMIPVFAESGARVIAPDFFGFGKSDKPV---DEEDYTF   99 (310)
T ss_dssp             CEEEEEEEECT---------TCSCEEEECCCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCEES---CGGGCCH
T ss_pred             eEEEEEEeCCC---------CCCCEEEEECCCCCch--hhHHHHHHHHHhCCCeEEEeCCCCCCCCCCCC---CcCCcCH
Confidence            77876554331         1026799999986433  36667788899999999999999966543210   0011111


Q ss_pred             -chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          553 -VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       553 -~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                       ...+|+.+.++.|   +   .+++.++||||||.+++.++ .+|+++++.|...+.
T Consensus       100 ~~~a~dl~~ll~~l---~---~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~  150 (310)
T 1b6g_A          100 EFHRNFLLALIERL---D---LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAX  150 (310)
T ss_dssp             HHHHHHHHHHHHHH---T---CCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHc---C---CCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccc
Confidence             1234555555544   2   36899999999999999998 899999999988764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.91  E-value=2.1e-07  Score=102.08  Aligned_cols=215  Identities=13%  Similarity=0.077  Sum_probs=128.3

Q ss_pred             ceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       148 ~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      .+.+++++ ..+.+...++.|.+++..+.  ....+...    ........|+|||++|+....+         ..|.++
T Consensus       348 ~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--~~~~~~~~----~~~v~~~~~s~dg~~l~~~~~d---------~~v~~~  412 (577)
T 2ymu_A          348 WGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGH----SSSVRGVAFSPDGQTIASASDD---------KTVKLW  412 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTCC--EEEEEECC----SSCEEEEEECTTSSCEEEEETT---------SEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEcCCCC--EEEEecCC----CCCeEEEEECCCCCEEEEEeCC---------CEEEEE
Confidence            34555555 44455556778888887543  34444432    2345678899999988876543         457778


Q ss_pred             EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                      |..+..   .+.+......+....||||+++|+....+        ..|.+++.++.    ....+.+..    ..+...
T Consensus       413 ~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~~d--------~~v~~w~~~~~----~~~~~~~~~----~~v~~~  473 (577)
T 2ymu_A          413 NRNGQL---LQTLTGHSSSVWGVAFSPDDQTIASASDD--------KTVKLWNRNGQ----LLQTLTGHS----SSVRGV  473 (577)
T ss_dssp             CTTCCE---EEEEECCSSCEEEEEECTTSSEEEEEETT--------SEEEEEETTSC----EEEEEECCS----SCEEEE
T ss_pred             eCCCCE---EEEecCCCCCeEEEEECCCCCEEEEEcCC--------CEEEEEECCCC----EEEEEcCCC----CCEEEE
Confidence            875543   44554444455667899999998876533        24777786543    334444444    456778


Q ss_pred             eeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                      .|+|||+++..... ++.  |..+|..+...+.+......+....|+            |+++.|+ +...+|.-+|  +
T Consensus       474 ~~spd~~~las~~~-d~~--i~iw~~~~~~~~~~~~h~~~v~~l~~s------------~dg~~l~-s~~~dg~v~l--w  535 (577)
T 2ymu_A          474 AFSPDGQTIASASD-DKT--VKLWNRNGQLLQTLTGHSSSVRGVAFS------------PDGQTIA-SASDDKTVKL--W  535 (577)
T ss_dssp             EECTTSCEEEEEET-TSE--EEEEETTSCEEEEEECCSSCEEEEEEC------------TTSSCEE-EEETTSEEEE--E
T ss_pred             EEcCCCCEEEEEeC-CCE--EEEEcCCCCEEEEEeCCCCCEEEEEEc------------CCCCEEE-EEECcCEEEE--E
Confidence            99999995555544 454  445565554455554333333333333            2666554 4555665444  5


Q ss_pred             eCCCCceeecccCCcceEee--eecCCEEE
Q 006979          387 DDFGHSLSLLDIPFTDIDNI--TLGNDCLF  414 (623)
Q Consensus       387 d~~~~~~~~lt~~~~~v~~~--~~~~~~~~  414 (623)
                      |..+..+..+......+..+  +++++.++
T Consensus       536 d~~~~~~~~~~~h~~~v~~~~fs~dg~~l~  565 (577)
T 2ymu_A          536 NRNGQLLQTLTGHSSSVWGVAFSPDGQTIA  565 (577)
T ss_dssp             CTTSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred             eCCCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            76666566665544556555  56666544

>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10

Probab=98.91  E-value=7.2e-09  Score=103.13  Aligned_cols=118  Identities=18%  Similarity=0.084  Sum_probs=76.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCC-CCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR  549 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg-~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~  549 (623)
                      +|..++.....+          ...|+||++||. |+......|...+..|+++ |.|+++|+||.|.+....     . 
T Consensus        15 ~g~~l~y~~~g~----------~g~p~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~-----~-   77 (285)
T 1c4x_A           15 GTLASHALVAGD----------PQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIGFGQSEYPE-----T-   77 (285)
T ss_dssp             TTSCEEEEEESC----------TTSCEEEEECCCSTTCCHHHHHGGGHHHHHTT-SEEEEECCTTSTTSCCCS-----S-
T ss_pred             CCEEEEEEecCC----------CCCCEEEEEeCCCCCCcchhhHHHHHHHHhhC-cEEEEecCCCCCCCCCCC-----C-
Confidence            577777544321          224779999997 3223334555666777765 999999999976543210     0 


Q ss_pred             CccchHHHH----HHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          550 WGIVDVNDC----CSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       550 ~g~~~~~D~----~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                       .....++.    .+.+..++++  .+.+++.++||||||.+++.++ .+|++++++|...+..
T Consensus        78 -~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~  138 (285)
T 1c4x_A           78 -YPGHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVG  138 (285)
T ss_dssp             -CCSSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCS
T ss_pred             -cccchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCC
Confidence             01123333    3333322222  1236899999999999999988 8999999999988754

>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens}

Probab=98.91  E-value=5e-09  Score=97.86  Aligned_cols=95  Identities=13%  Similarity=0.060  Sum_probs=67.7

Q ss_pred             CCCEEEEecCCCCCcc-cCcCCH-HhHHHHcC-ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          494 KPPLLVKSHGGPTSEA-RGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~-~~~~~~-~~~~~a~~-G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      +.|.||++||++.... ...+.. ....|+++ ||.|+.+|+||....                  +....++.+.+.-.
T Consensus         3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~~------------------~~~~~~~~~~~~l~   64 (194)
T 2qs9_A            3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITA------------------RESIWLPFMETELH   64 (194)
T ss_dssp             CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTTC------------------CHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCcc------------------cHHHHHHHHHHHhC
Confidence            3589999999965432 233444 67788888 999999999984210                  12233334443311


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      + .+++.++|||+||++++.++ .+|  ++++|..+|..+
T Consensus        65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~  101 (194)
T 2qs9_A           65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTS  101 (194)
T ss_dssp             C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSS
T ss_pred             c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCcc
Confidence            2 37999999999999999998 777  999999988754

>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ...

Probab=98.90  E-value=3.6e-09  Score=103.87  Aligned_cols=102  Identities=14%  Similarity=0.090  Sum_probs=73.4

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+.  ....|...+..|+++||.|+++|+||.|.+....    .   ....+++..+.+..++++-. ..++
T Consensus         4 ~~vvllHG~~~--~~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~----~---~~~~~~~~a~dl~~~l~~l~-~~~~   73 (257)
T 3c6x_A            4 AHFVLIHTICH--GAWIWHKLKPLLEALGHKVTALDLAASGVDPRQI----E---EIGSFDEYSEPLLTFLEALP-PGEK   73 (257)
T ss_dssp             CEEEEECCTTC--CGGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG----G---GCCSHHHHTHHHHHHHHTSC-TTCC
T ss_pred             CcEEEEcCCcc--CcCCHHHHHHHHHhCCCEEEEeCCCCCCCCCCCc----c---cccCHHHHHHHHHHHHHhcc-ccCC
Confidence            56899999853  3345777889999999999999999976653210    0   11234555544444444310 1368


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +.++||||||++++.++ .+|+++++.|...+.
T Consensus        74 ~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~  106 (257)
T 3c6x_A           74 VILVGESCGGLNIAIAADKYCEKIAAAVFHNSV  106 (257)
T ss_dssp             EEEEEEETHHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eEEEEECcchHHHHHHHHhCchhhheEEEEecc
Confidence            99999999999999999 889999999987653

>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A

Probab=98.90  E-value=4.9e-09  Score=104.42  Aligned_cols=103  Identities=13%  Similarity=0.078  Sum_probs=69.0

Q ss_pred             CEEEEecCCC-CCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          496 PLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~-~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      |.||++||.. .......|......| ++||.|+++|+||.|.+...-    ..   ....++..+.+..++++  ...+
T Consensus        26 ~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~~----~~---~~~~~~~a~dl~~~l~~--l~~~   95 (282)
T 1iup_A           26 QPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGFGFTDRPE----NY---NYSKDSWVDHIIGIMDA--LEIE   95 (282)
T ss_dssp             SEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCCT----TC---CCCHHHHHHHHHHHHHH--TTCC
T ss_pred             CeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCCCCCCCCCC----CC---CCCHHHHHHHHHHHHHH--hCCC
Confidence            4699999953 222112444455566 678999999999966543210    00   12344444444443333  1246


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.++||||||.+++.++ .+|++++++|...+..
T Consensus        96 ~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~  130 (282)
T 1iup_A           96 KAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAG  130 (282)
T ss_dssp             SEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCC
T ss_pred             ceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCcc
Confidence            899999999999999998 8999999999988754

>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A

Probab=98.89  E-value=5.1e-09  Score=104.14  Aligned_cols=103  Identities=9%  Similarity=0.054  Sum_probs=72.6

Q ss_pred             CCEEEEecCCCCCcccCcCC-HHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~-~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      .|.||++||.+...  ..|. .....++++||.|+++|+||.|   .+-.   ..   ....++..+.+..+++.  ++.
T Consensus        43 ~~~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G---~s~~---~~---~~~~~~~~~~~~~~l~~--l~~  109 (293)
T 3hss_A           43 GDPVVFIAGRGGAG--RTWHPHQVPAFLAAGYRCITFDNRGIG---ATEN---AE---GFTTQTMVADTAALIET--LDI  109 (293)
T ss_dssp             SEEEEEECCTTCCG--GGGTTTTHHHHHHTTEEEEEECCTTSG---GGTT---CC---SCCHHHHHHHHHHHHHH--HTC
T ss_pred             CCEEEEECCCCCch--hhcchhhhhhHhhcCCeEEEEccCCCC---CCCC---cc---cCCHHHHHHHHHHHHHh--cCC
Confidence            47899999985433  3455 4677888999999999999964   3211   11   12334443333333332  134


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      +++.++|||+||.+++.++ .+|++++++|...|....
T Consensus       110 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~  147 (293)
T 3hss_A          110 APARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRL  147 (293)
T ss_dssp             CSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSC
T ss_pred             CcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccC
Confidence            6899999999999999888 889999999999997654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.89  E-value=2.2e-07  Score=92.79  Aligned_cols=234  Identities=14%  Similarity=0.087  Sum_probs=134.7

Q ss_pred             eEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          149 AFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       149 ~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      ..+++++  .+++++..++.|++++++++   .+.+...    ........++|+|+.++. ....        ..|+++
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~----~~~~~~l~~~~dg~l~v~-~~~~--------~~i~~~   95 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHP----SHHQNGHCLNKQGHLIAC-SHGL--------RRLERQ   95 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESS----CSSEEEEEECTTCCEEEE-ETTT--------TEEEEE
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECC----CCCcceeeECCCCcEEEE-ecCC--------CeEEEE
Confidence            3445544  58999888888999999754   4444332    233456789999985443 2211        569999


Q ss_pred             EcCCCCcccceecccC-----CCcccceeeCCCCCEEEEEEec----------CCCCCCCceEEEEEEecCCCceeeeEE
Q 006979          227 ALNGQNIQEPKVLVSG-----SDFYAFPRMDPRGERMAWIEWH----------HPNMPWDKAELWVGYISENGDVYKRVC  291 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~-----~~~~~~p~wSPDG~~la~~~~~----------~~~~p~~~~~L~v~d~~~~~~~~~~~~  291 (623)
                      |+.+++   .+.+...     ........++|||+ |++....          .....-....||.++.+ + .  ...+
T Consensus        96 d~~~g~---~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~--~~~~  167 (296)
T 3e5z_A           96 REPGGE---WESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-T--LSAP  167 (296)
T ss_dssp             CSTTCC---EEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-C--EEEE
T ss_pred             cCCCCc---EEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-C-C--EEEe
Confidence            997776   4444321     12234578999997 5554210          00000013478888766 3 1  2222


Q ss_pred             EcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecC-CCeE---EEEeecccccccccccccCcceeEEeecCC
Q 006979          292 VAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGE  367 (623)
Q Consensus       292 ~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~-~~~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~  367 (623)
                       ....    ..+..+.|+|||+++ +++.  +...|++++++ +++.   ..+. . .....      ...+.+.   ++
T Consensus       168 -~~~~----~~~~gi~~s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~-~-~~~~~------p~~i~~d---~~  228 (296)
T 3e5z_A          168 -IRDR----VKPNGLAFLPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHF-T-VEPGK------TDGLRVD---AG  228 (296)
T ss_dssp             -ECCC----SSEEEEEECTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEE-C-CSSSC------CCSEEEB---TT
T ss_pred             -ecCC----CCCccEEECCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEe-e-CCCCC------CCeEEEC---CC
Confidence             2222    344678999999966 5554  33467777775 4544   2232 1 11111      1233443   14


Q ss_pred             CCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEee---eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          368 KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       368 ~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~---~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      | .++++.  +  ..|+++|++++.+..+..+.. +..+   .++++.+++...     ..||+++++++++
T Consensus       229 G-~l~v~~--~--~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~-----~~l~~~~~~~~~~  289 (296)
T 3e5z_A          229 G-LIWASA--G--DGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS-----TEFWSIETNVRGL  289 (296)
T ss_dssp             S-CEEEEE--T--TEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEET-----TEEEEEECSCCBC
T ss_pred             C-CEEEEc--C--CeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC-----CeEEEEEcccccc
Confidence            4 466655  3  468889998776677766544 4333   345566666543     3799999887764

>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}

Probab=98.89  E-value=6.8e-09  Score=107.24  Aligned_cols=115  Identities=12%  Similarity=0.090  Sum_probs=76.6

Q ss_pred             CCCCEEEEecCCCCCccc----------C-cCCHHh---HHHHcCceEEEEECCCCCCC--------CchhHHHhhcc--
Q 006979          493 EKPPLLVKSHGGPTSEAR----------G-ILNLSI---QYWTSRGWAFVDVNYGGSTG--------YGREFRERLLG--  548 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~----------~-~~~~~~---~~~a~~G~~v~~~d~rGs~~--------~g~~~~~~~~~--  548 (623)
                      .+.|+||++||.+.....          . .|...+   +.+.++||.|+++|+||.|.        .|..-.....+  
T Consensus        40 ~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~G~S~G~~~g~~g~~~~~p~~~~~  119 (377)
T 3i1i_A           40 ERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTDNLCNVQVKNPHVITTGPKSINPKTGDE  119 (377)
T ss_dssp             TCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSCTTSTTCCCCSTTSBCTTTSSB
T ss_pred             CCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEecccccccccCCCcccCCCCCCCCCCCCc
Confidence            345899999998755433          0 133334   56778999999999997632        22211000000  


Q ss_pred             ---CCccchHHHHHHHHHHHHhCCCCCCCceE-EEEcChHHHHHHHHh-cCCCceeEEEe-cccCCC
Q 006979          549 ---RWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAAL-AFRDTFKAGAS-LYGVSI  609 (623)
Q Consensus       549 ---~~g~~~~~D~~~~~~~l~~~~~~d~~rv~-i~G~S~GG~~~~~~~-~~~~~f~a~v~-~~g~~d  609 (623)
                         .+....++|+.+.+..++++  .+.+++. |+||||||.+++.++ .+|++++++|. ..+...
T Consensus       120 ~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~  184 (377)
T 3i1i_A          120 YAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYPHMVERMIGVITNPQN  184 (377)
T ss_dssp             CGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCTTTBSEEEEESCCSBC
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHChHHHHHhcccCcCCCc
Confidence               12234567777777776654  2346886 999999999999988 89999999999 555443

>1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A*

Probab=98.89  E-value=5.3e-09  Score=106.83  Aligned_cols=120  Identities=13%  Similarity=0.094  Sum_probs=79.9

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC-------HHhHHHHcCceEEEEECCCCCCCCchhHHHhh
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-------LSIQYWTSRGWAFVDVNYGGSTGYGREFRERL  546 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~-------~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~  546 (623)
                      .++..++.|.+       ..+ |.||++||+..  ....|.       ..++.|+++||.|+.+|+||.|..+.......
T Consensus        49 ~~~~~~~~p~~-------~~~-~~vvl~HG~g~--~~~~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~  118 (328)
T 1qlw_A           49 QMYVRYQIPQR-------AKR-YPITLIHGCCL--TGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAIN  118 (328)
T ss_dssp             CEEEEEEEETT-------CCS-SCEEEECCTTC--CGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHH
T ss_pred             eEEEEEEccCC-------CCC-ccEEEEeCCCC--CCCccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCcccc
Confidence            35666676754       223 56889999853  333444       47889999999999999999776543211100


Q ss_pred             ----------------------------cc-CCcc---------chHHH------------------HHHHHHHHHhCCC
Q 006979          547 ----------------------------LG-RWGI---------VDVND------------------CCSCATFLVGSGK  570 (623)
Q Consensus       547 ----------------------------~~-~~g~---------~~~~D------------------~~~~~~~l~~~~~  570 (623)
                                                  .+ .|..         ...++                  +.+++..++++  
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--  196 (328)
T 1qlw_A          119 AVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIK--  196 (328)
T ss_dssp             HHHTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHH--
T ss_pred             cccccccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHH--
Confidence                                        00 0000         00222                  45555555544  


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +  +++.++|||+||.+++.++ .+|++++++|+..|.
T Consensus       197 ~--~~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~  232 (328)
T 1qlw_A          197 L--DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPG  232 (328)
T ss_dssp             H--TSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCS
T ss_pred             h--CCceEEEECcccHHHHHHHHhChhheeEEEEeCCC
Confidence            1  3899999999999999988 789999999999975

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.89  E-value=4.1e-07  Score=92.33  Aligned_cols=249  Identities=12%  Similarity=0.038  Sum_probs=134.3

Q ss_pred             EEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          151 RIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       151 ~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      +++++ .+++++..++.|+++|++++  ..+.+...   .......+.++|||+.++....+..     ....|+++|++
T Consensus        51 ~~~~~g~l~~~~~~~~~i~~~d~~~~--~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~~-----~~~~i~~~d~~  120 (333)
T 2dg1_A           51 NFDRQGQLFLLDVFEGNIFKINPETK--EIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFK-----STGGIFAATEN  120 (333)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTC--CEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSS-----SCCEEEEECTT
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCC--cEEEEeeC---CCCCcceEEECCCCcEEEEeCCCCC-----CCceEEEEeCC
Confidence            34444 67777777788999999877  55554321   0234566889999986554332211     11579999999


Q ss_pred             CCCccccee-ccc--CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          230 GQNIQEPKV-LVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       230 ~g~~~~~~~-l~~--~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                      ++.   .+. +..  .........++|||+ |++....... .-....||+++.+++.   ...+....     .....+
T Consensus       121 ~~~---~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~-~~~~~~l~~~~~~~~~---~~~~~~~~-----~~~~~i  187 (333)
T 2dg1_A          121 GDN---LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYS-TNPLGGVYYVSPDFRT---VTPIIQNI-----SVANGI  187 (333)
T ss_dssp             SCS---CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBT-TBCCEEEEEECTTSCC---EEEEEEEE-----SSEEEE
T ss_pred             CCE---EEEEEccCccCCcccceEECCCCC-EEEEeccccc-cCCCceEEEEeCCCCE---EEEeecCC-----Ccccce
Confidence            887   442 221  123345568999997 5555432100 0014568888876542   22222211     234578


Q ss_pred             eeCCCCcEEEEEeCCCCeeeEEEEecCC--CeEEEEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          307 KWSSKGELFFVTDRKNGFWNLHKWIESN--NEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~g~~~L~~~d~~~--~~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      .|+|||+.+|+++.  ....|+++|+++  .....+... ...+...   .....+.+.   +++ .+++....+  ..|
T Consensus       188 ~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~---~~~~~i~~d---~~G-~l~v~~~~~--~~v  256 (333)
T 2dg1_A          188 ALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGH---EGPDSCCID---SDD-NLYVAMYGQ--GRV  256 (333)
T ss_dssp             EECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSS---SEEEEEEEB---TTC-CEEEEEETT--TEE
T ss_pred             EECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCC---CCCCceEEC---CCC-CEEEEEcCC--CEE
Confidence            99999984444443  233678888753  223322110 0000000   011223333   244 466554333  367


Q ss_pred             EEEeCCCCceeecccCCc------ceEee--eecCCEEEEEEecC--CCCCeEEEEEcCC
Q 006979          384 GILDDFGHSLSLLDIPFT------DIDNI--TLGNDCLFVEGASG--VEPSSVAKVTLDD  433 (623)
Q Consensus       384 ~~~d~~~~~~~~lt~~~~------~v~~~--~~~~~~~~~~~~s~--~~~~~ly~~~l~~  433 (623)
                      +++|.+++..+.+..+..      .+..+  +++++.+++.....  .....||++++..
T Consensus       257 ~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~  316 (333)
T 2dg1_A          257 LVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA  316 (333)
T ss_dssp             EEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred             EEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEeccc
Confidence            888987666666654422      22333  55667887766542  3345788888654

>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus}

Probab=98.89  E-value=5.4e-09  Score=103.06  Aligned_cols=101  Identities=13%  Similarity=0.082  Sum_probs=72.6

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+..  ...|...+..|++. |.|+++|+||.|.+...     .. . ....++..+.+..++++  .+.++
T Consensus        17 ~~vvllHG~~~~--~~~~~~~~~~L~~~-~~vi~~Dl~G~G~S~~~-----~~-~-~~~~~~~~~dl~~~l~~--l~~~~   84 (269)
T 2xmz_A           17 QVLVFLHGFLSD--SRTYHNHIEKFTDN-YHVITIDLPGHGEDQSS-----MD-E-TWNFDYITTLLDRILDK--YKDKS   84 (269)
T ss_dssp             EEEEEECCTTCC--GGGGTTTHHHHHTT-SEEEEECCTTSTTCCCC-----TT-S-CCCHHHHHHHHHHHHGG--GTTSE
T ss_pred             CeEEEEcCCCCc--HHHHHHHHHHHhhc-CeEEEecCCCCCCCCCC-----CC-C-ccCHHHHHHHHHHHHHH--cCCCc
Confidence            359999999544  33566677788775 99999999997654331     01 0 22355555555544443  23469


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +.++||||||.+++.++ .+|++++++|...+..
T Consensus        85 ~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~  118 (269)
T 2xmz_A           85 ITLFGYSMGGRVALYYAINGHIPISNLILESTSP  118 (269)
T ss_dssp             EEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCS
T ss_pred             EEEEEECchHHHHHHHHHhCchheeeeEEEcCCc
Confidence            99999999999999999 8999999999988654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.89  E-value=1.6e-07  Score=95.60  Aligned_cols=224  Identities=9%  Similarity=-0.037  Sum_probs=126.4

Q ss_pred             EEEeC--CEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          150 FRIFG--DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       150 ~~~s~--d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      ..+++  +.++|++...++|++++++++  ..+.+...     .....+.++|+|+.++.. .          ..|+++|
T Consensus        54 p~~~~~~~~l~~~d~~~~~i~~~d~~~~--~~~~~~~~-----~~v~~i~~~~dg~l~v~~-~----------~gl~~~d  115 (326)
T 2ghs_A           54 PTFDPASGTAWWFNILERELHELHLASG--RKTVHALP-----FMGSALAKISDSKQLIAS-D----------DGLFLRD  115 (326)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTT--EEEEEECS-----SCEEEEEEEETTEEEEEE-T----------TEEEEEE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEECCCC--cEEEEECC-----CcceEEEEeCCCeEEEEE-C----------CCEEEEE
Confidence            34454  488998877788999999876  45544432     234567799999866553 2          3499999


Q ss_pred             cCCCCcccceecccCC-----CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcccc
Q 006979          228 LNGQNIQEPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES  302 (623)
Q Consensus       228 l~~g~~~~~~~l~~~~-----~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~  302 (623)
                      +++++   .+.+....     .......++|||+ |++....... ......||+++ + + .  ...+..+.     ..
T Consensus       116 ~~~g~---~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~-~~~~~~l~~~~-~-g-~--~~~~~~~~-----~~  180 (326)
T 2ghs_A          116 TATGV---LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKA-ETGAGSIYHVA-K-G-K--VTKLFADI-----SI  180 (326)
T ss_dssp             TTTCC---EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTC-CTTCEEEEEEE-T-T-E--EEEEEEEE-----SS
T ss_pred             CCCCc---EEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcC-CCCceEEEEEe-C-C-c--EEEeeCCC-----cc
Confidence            98887   55443221     1234567999998 5554432110 01246799988 3 3 1  22222221     23


Q ss_pred             CcCceeCCCCcEEEEEeCCCCeeeEEEEecC--CC-eE---EEEeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIES--NN-EV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (623)
Q Consensus       303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~--~~-~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~  376 (623)
                      ...+.|+|||+.+|+.+.  ....|+++|.+  ++ +.   +.+......    .+.+  +.+.+.    .++.+++...
T Consensus       181 ~~~i~~s~dg~~lyv~~~--~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~----~~~p--~gi~~d----~~G~lwva~~  248 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDT--KVNRLMRVPLDARTGLPTGKAEVFIDSTGI----KGGM--DGSVCD----AEGHIWNARW  248 (326)
T ss_dssp             EEEEEECTTSCEEEEEET--TTCEEEEEEBCTTTCCBSSCCEEEEECTTS----SSEE--EEEEEC----TTSCEEEEEE
T ss_pred             cCCeEEcCCCCEEEEEEC--CCCEEEEEEcccccCCcccCceEEEECCCC----CCCC--CeeEEC----CCCCEEEEEe
Confidence            357899999984444444  23478888875  55 31   222211100    1111  223332    2334555543


Q ss_pred             ECCeEEEEEEeCCCCceeecccCCcceEee--e-ecCCEEEEEEecC
Q 006979          377 QNGRSYLGILDDFGHSLSLLDIPFTDIDNI--T-LGNDCLFVEGASG  420 (623)
Q Consensus       377 ~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~--~-~~~~~~~~~~~s~  420 (623)
                      ..  ..|+++|++++..+.+..+...+..+  + ++++.+++.....
T Consensus       249 ~~--~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          249 GE--GAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             TT--TEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CC--CEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            22  36889999766666666654444444  3 5567777765543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.88  E-value=3.6e-07  Score=93.06  Aligned_cols=238  Identities=11%  Similarity=-0.025  Sum_probs=139.7

Q ss_pred             eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      ...+.++.+++....++.|.++|++++ .....++..     .......++|+| ++++.....        ..|+++|+
T Consensus        48 ~i~~~~~~lyv~~~~~~~v~viD~~t~-~~~~~i~~~-----~~p~~i~~~~~g-~lyv~~~~~--------~~v~~iD~  112 (328)
T 3dsm_A           48 SMVIRDGIGWIVVNNSHVIFAIDINTF-KEVGRITGF-----TSPRYIHFLSDE-KAYVTQIWD--------YRIFIINP  112 (328)
T ss_dssp             EEEEETTEEEEEEGGGTEEEEEETTTC-CEEEEEECC-----SSEEEEEEEETT-EEEEEEBSC--------SEEEEEET
T ss_pred             EEEEECCEEEEEEcCCCEEEEEECccc-EEEEEcCCC-----CCCcEEEEeCCC-eEEEEECCC--------CeEEEEEC
Confidence            345567788888877788999999987 223455432     223356788898 555443221        67999999


Q ss_pred             CCCCcccceecccCC-----CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          229 NGQNIQEPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       229 ~~g~~~~~~~l~~~~-----~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      .+++.  ...+.-+.     .......+  ++++|+...+..      ...|.++|++++.   ....+.. .    ..+
T Consensus       113 ~t~~~--~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~------~~~v~viD~~t~~---~~~~i~~-g----~~p  174 (328)
T 3dsm_A          113 KTYEI--TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSY------QNRILKIDTETDK---VVDELTI-G----IQP  174 (328)
T ss_dssp             TTTEE--EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTT------CCEEEEEETTTTE---EEEEEEC-S----SCB
T ss_pred             CCCeE--EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCC------CCEEEEEECCCCe---EEEEEEc-C----CCc
Confidence            98872  12232222     02334456  677787664321      3469999988763   2222222 1    234


Q ss_pred             cCceeCCCCcEEEEEeCCCC-------eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979          304 TEPKWSSKGELFFVTDRKNG-------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g-------~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~  376 (623)
                      ....+++||++|+......+       ...|+++|+.+++.........  +.     ....+.+.   |+++.+|++..
T Consensus       175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~-----~p~~la~~---~d~~~lyv~~~  244 (328)
T 3dsm_A          175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GD-----WPSEVQLN---GTRDTLYWINN  244 (328)
T ss_dssp             CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TC-----CCEEEEEC---TTSCEEEEESS
T ss_pred             cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CC-----CceeEEEe---cCCCEEEEEcc
Confidence            57889999987666543100       2579999998887553322110  10     11233443   37787877542


Q ss_pred             ECCeEEEEEEeCCCCceee---cccCCcceEee--eecCCEEEEEEe-cCCCCCeEEEEEcCCCc
Q 006979          377 QNGRSYLGILDDFGHSLSL---LDIPFTDIDNI--TLGNDCLFVEGA-SGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       377 ~~g~~~L~~~d~~~~~~~~---lt~~~~~v~~~--~~~~~~~~~~~~-s~~~~~~ly~~~l~~~~  435 (623)
                           .++++|.+++++..   ++........+  +++++.+|+... +......|++++.+ ++
T Consensus       245 -----~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          245 -----DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             -----SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             -----EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence                 79999998887632   22111223334  556777777652 22345679999887 54

>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli}

Probab=98.88  E-value=1.2e-08  Score=101.70  Aligned_cols=103  Identities=13%  Similarity=0.108  Sum_probs=71.9

Q ss_pred             CEEEEecCCC-CCcccCcCCHHh-HHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          496 PLLVKSHGGP-TSEARGILNLSI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       496 Pliv~~hGg~-~~~~~~~~~~~~-~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      |.||++||.. .......|.... ..|++. |.|+++|+||.|.+....     .  .....++..+.+..++++  .+.
T Consensus        37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~~-~~vi~~D~~G~G~S~~~~-----~--~~~~~~~~~~~l~~~l~~--l~~  106 (289)
T 1u2e_A           37 ETVVLLHGSGPGATGWANFSRNIDPLVEAG-YRVILLDCPGWGKSDSVV-----N--SGSRSDLNARILKSVVDQ--LDI  106 (289)
T ss_dssp             SEEEEECCCSTTCCHHHHTTTTHHHHHHTT-CEEEEECCTTSTTSCCCC-----C--SSCHHHHHHHHHHHHHHH--TTC
T ss_pred             ceEEEECCCCcccchhHHHHHhhhHHHhcC-CeEEEEcCCCCCCCCCCC-----c--cccCHHHHHHHHHHHHHH--hCC
Confidence            4899999973 223333555555 667665 999999999976543311     0  123455555555555443  234


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +++.++|||+||.+++.++ .+|++++++|...+..
T Consensus       107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~  142 (289)
T 1u2e_A          107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGT  142 (289)
T ss_dssp             CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSC
T ss_pred             CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCc
Confidence            7999999999999999988 8999999999887753

>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*

Probab=98.87  E-value=4.1e-09  Score=112.42  Aligned_cols=114  Identities=12%  Similarity=0.081  Sum_probs=74.0

Q ss_pred             CCCEEEEecCCCCCcccCc-CCHHhH---HHHcCceEEEEECCCCC--CCCchhHHHhhccC---C----ccchHHHHHH
Q 006979          494 KPPLLVKSHGGPTSEARGI-LNLSIQ---YWTSRGWAFVDVNYGGS--TGYGREFRERLLGR---W----GIVDVNDCCS  560 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~-~~~~~~---~~a~~G~~v~~~d~rGs--~~~g~~~~~~~~~~---~----g~~~~~D~~~  560 (623)
                      ..|.||++||.+....... |...+.   .|+++||.|+++|+||.  |..+..-.....+.   |    .....+|..+
T Consensus       108 ~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~~~G~S~~~~~~~~~~~~~~~~~~f~~~t~~~~a~  187 (444)
T 2vat_A          108 RDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVR  187 (444)
T ss_dssp             SCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHH
T ss_pred             CCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCCCCCCCCCCCCCcccccccccccccccccHHHHHH
Confidence            3578999999965444311 444443   56688999999999994  33321100000000   1    1234555555


Q ss_pred             HHHHHHhCCCCCCCc-eEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          561 CATFLVGSGKADEKR-LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       561 ~~~~l~~~~~~d~~r-v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      .+..+++.  ...++ +.++||||||.+++.++ .+|++++++|...+...
T Consensus       188 dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~  236 (444)
T 2vat_A          188 IHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCR  236 (444)
T ss_dssp             HHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSB
T ss_pred             HHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEecccc
Confidence            55554443  12467 99999999999999998 88999999999988764

>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A

Probab=98.87  E-value=4.9e-09  Score=104.62  Aligned_cols=103  Identities=14%  Similarity=0.106  Sum_probs=71.7

Q ss_pred             CEEEEecCC-CCCcccCcCCHHh-HHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          496 PLLVKSHGG-PTSEARGILNLSI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       496 Pliv~~hGg-~~~~~~~~~~~~~-~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      |.||++||. |++.....|...+ ..|+++ |.|+++|+||.|.+...     ..  .....++..+.+..++++  .+.
T Consensus        34 ~~vvllHG~~~~~~~~~~w~~~~~~~L~~~-~~vi~~D~~G~G~S~~~-----~~--~~~~~~~~a~dl~~~l~~--l~~  103 (286)
T 2puj_A           34 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGFNKSDAV-----VM--DEQRGLVNARAVKGLMDA--LDI  103 (286)
T ss_dssp             SEEEEECCCSTTCCHHHHHTTTHHHHHHTT-CEEEEECCTTSTTSCCC-----CC--SSCHHHHHHHHHHHHHHH--TTC
T ss_pred             CcEEEECCCCCCCCcHHHHHHHHHHHHhcc-CEEEEECCCCCCCCCCC-----CC--cCcCHHHHHHHHHHHHHH--hCC
Confidence            579999997 3223333555566 778776 99999999996654321     01  022345554444444433  224


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +++.|+||||||.+++.++ .+|++++++|...+..
T Consensus       104 ~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~  139 (286)
T 2puj_A          104 DRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGG  139 (286)
T ss_dssp             CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSC
T ss_pred             CceEEEEECHHHHHHHHHHHhChHhhheEEEECccc
Confidence            7999999999999999998 8999999999987753

>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13

Probab=98.87  E-value=4e-09  Score=105.88  Aligned_cols=101  Identities=15%  Similarity=0.086  Sum_probs=77.3

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcC--ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~--G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~  571 (623)
                      ..|.||++||.+..  ...|...++.|+++  ||.|+.+|+||.|......         ....+|+.+.+..+.+..  
T Consensus        35 ~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~s~~~~---------~~~~~~~~~~l~~~~~~~--  101 (302)
T 1pja_A           35 SYKPVIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFDGRESLRPL---------WEQVQGFREAVVPIMAKA--  101 (302)
T ss_dssp             CCCCEEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSCSGGGGSCH---------HHHHHHHHHHHHHHHHHC--
T ss_pred             CCCeEEEECCCCCC--hhHHHHHHHHHHhcCCCcEEEEeccCCCccchhhH---------HHHHHHHHHHHHHHhhcC--
Confidence            44678899998543  34677888999998  9999999999964322211         124667777777776653  


Q ss_pred             CCCceEEEEcChHHHHHHHHh-cCCC-ceeEEEecccCC
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-AFRD-TFKAGASLYGVS  608 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~~~~-~f~a~v~~~g~~  608 (623)
                       .+++.++|||+||.+++.++ .+|+ +++++|...+..
T Consensus       102 -~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~  139 (302)
T 1pja_A          102 -PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQ  139 (302)
T ss_dssp             -TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCT
T ss_pred             -CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCc
Confidence             47999999999999999999 8898 799999888754

>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni}

Probab=98.87  E-value=2.3e-09  Score=104.91  Aligned_cols=101  Identities=13%  Similarity=0.071  Sum_probs=71.9

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      |.||++||.+..  ...|......|++ +||.|+.+|+||.|.......     .--....+|+.+.++++.     +.+
T Consensus        22 ~~vv~lhG~~~~--~~~~~~~~~~l~~~~g~~v~~~d~~G~G~s~~~~~-----~~~~~~~~~~~~~l~~~~-----~~~   89 (272)
T 3fsg_A           22 TPIIFLHGLSLD--KQSTCLFFEPLSNVGQYQRIYLDLPGMGNSDPISP-----STSDNVLETLIEAIEEII-----GAR   89 (272)
T ss_dssp             SEEEEECCTTCC--HHHHHHHHTTSTTSTTSEEEEECCTTSTTCCCCSS-----CSHHHHHHHHHHHHHHHH-----TTC
T ss_pred             CeEEEEeCCCCc--HHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHh-----CCC
Confidence            678999998533  3345555666776 799999999999765433211     011112345555555532     347


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.++|||+||.+++.++ .+|++++++|...|..
T Consensus        90 ~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~  124 (272)
T 3fsg_A           90 RFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI  124 (272)
T ss_dssp             CEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECS
T ss_pred             cEEEEEeCchHHHHHHHHHhChHhhheeEEECccc
Confidence            999999999999999999 8899999999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.86  E-value=6.6e-07  Score=89.87  Aligned_cols=237  Identities=11%  Similarity=0.117  Sum_probs=138.0

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+..++++ ..+++...++.|.++++.++ .....+...    ........|+|+|++|+....+         ..|.+
T Consensus        26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------~~i~v   91 (312)
T 4ery_A           26 VSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGH----KLGISDVAWSSDSNLLVSASDD---------KTLKI   91 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEE
T ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCc-ccchhhccC----CCceEEEEEcCCCCEEEEECCC---------CEEEE
Confidence            445566655 45556667888999998766 223334332    3346678899999988876554         56888


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      +|+.+++.  ...+...........|+|||+.|+....+.        .|.++|+..+.   ....+....    ..+..
T Consensus        92 wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~~~---~~~~~~~~~----~~v~~  154 (312)
T 4ery_A           92 WDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--------SVRIWDVKTGK---CLKTLPAHS----DPVSA  154 (312)
T ss_dssp             EETTTCCE--EEEEECCSSCEEEEEECSSSSEEEEEETTS--------CEEEEETTTCC---EEEEECCCS----SCEEE
T ss_pred             EECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCE---EEEEecCCC----CcEEE
Confidence            89988762  334444445556678999999888665433        38888988763   233344433    45677


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE-EEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~-~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      ..|+|||++++.... ++.  |..+|..+++.. .+... ...+..         ..+   +|+++.++. ...++.  |
T Consensus       155 ~~~~~~~~~l~~~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~l~~-~~~d~~--i  216 (312)
T 4ery_A          155 VHFNRDGSLIVSSSY-DGL--CRIWDTASGQCLKTLIDDDNPPVSF---------VKF---SPNGKYILA-ATLDNT--L  216 (312)
T ss_dssp             EEECTTSSEEEEEET-TSC--EEEEETTTCCEEEEECCSSCCCEEE---------EEE---CTTSSEEEE-EETTTE--E
T ss_pred             EEEcCCCCEEEEEeC-CCc--EEEEECCCCceeeEEeccCCCceEE---------EEE---CCCCCEEEE-EcCCCe--E
Confidence            899999995555554 454  556677666533 23221 111111         222   236665554 445564  5


Q ss_pred             EEEeCCCCcee-ecccCCcc---e-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          384 GILDDFGHSLS-LLDIPFTD---I-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       384 ~~~d~~~~~~~-~lt~~~~~---v-~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      .++|+.+++.. .+......   + ..+...++.+++.++.   ...|+..++.+++
T Consensus       217 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~  270 (312)
T 4ery_A          217 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTKE  270 (312)
T ss_dssp             EEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT---TSCEEEEETTTCC
T ss_pred             EEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC---CCEEEEEECCCch
Confidence            55677666543 33322111   1 1223344545544432   2467788877765

>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0

Probab=98.85  E-value=9.5e-09  Score=102.04  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=68.5

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+...  ..|......|+++||.|+++|+||.|.+...        ......++..+.+..+++.  .+.++
T Consensus        28 ~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~--------~~~~~~~~~a~dl~~ll~~--l~~~~   95 (281)
T 3fob_A           28 KPVVLIHGWPLSG--RSWEYQVPALVEAGYRVITYDRRGFGKSSQP--------WEGYEYDTFTSDLHQLLEQ--LELQN   95 (281)
T ss_dssp             EEEEEECCTTCCG--GGGTTTHHHHHHTTEEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHH--TTCCS
T ss_pred             CeEEEECCCCCcH--HHHHHHHHHHHhCCCEEEEeCCCCCCCCCCC--------ccccCHHHHHHHHHHHHHH--cCCCc
Confidence            4578899996443  4566677889999999999999997654331        1112334444333333332  12468


Q ss_pred             eEEEEcChHHHHHHHHh-c-CCCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-A-FRDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~-~~~~f~a~v~~~g~  607 (623)
                      +.++||||||.+++.++ . +|++++.+|...+.
T Consensus        96 ~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~  129 (281)
T 3fob_A           96 VTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAV  129 (281)
T ss_dssp             EEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred             EEEEEECccHHHHHHHHHHccccceeEEEEecCC
Confidence            99999999998777655 4 58999999987654

>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei}

Probab=98.85  E-value=1.3e-08  Score=104.27  Aligned_cols=102  Identities=16%  Similarity=0.067  Sum_probs=74.4

Q ss_pred             CCCEEEEecCCCCCcccCc-CCHHhHHHHcCceEEEEECC----CCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC
Q 006979          494 KPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNY----GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS  568 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~-~~~~~~~~a~~G~~v~~~d~----rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~  568 (623)
                      ..|.||++||.+.+..... +...+..| ++||.|+.+|+    ||.|.+...           ...+|+.+.++++.++
T Consensus        37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~S~~~-----------~~~~d~~~~~~~l~~~  104 (335)
T 2q0x_A           37 ARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIGSGPQDHA-----------HDAEDVDDLIGILLRD  104 (335)
T ss_dssp             SSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTTSCSCCHH-----------HHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCCCCCcccc-----------CcHHHHHHHHHHHHHH
Confidence            3578899999754332222 23456666 78999999964    775443211           2367888889988774


Q ss_pred             CCCCCCceEEEEcChHHHHHHHHh-c--CCCceeEEEecccCCC
Q 006979          569 GKADEKRLCITGGSAGGYTTLAAL-A--FRDTFKAGASLYGVSI  609 (623)
Q Consensus       569 ~~~d~~rv~i~G~S~GG~~~~~~~-~--~~~~f~a~v~~~g~~d  609 (623)
                        .+.+++.|+||||||.+++.++ .  +|++++++|...|..+
T Consensus       105 --l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~  146 (335)
T 2q0x_A          105 --HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCD  146 (335)
T ss_dssp             --SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCC
T ss_pred             --cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCccc
Confidence              3457999999999999999887 3  6899999999888654

>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11}

Probab=98.85  E-value=1.3e-08  Score=100.43  Aligned_cols=103  Identities=10%  Similarity=0.056  Sum_probs=73.6

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      ..|.||++||.+..  ...|......|++ +|.|+++|+||.|.+...       .......++..+.+..+++.-  ..
T Consensus        14 ~~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l--~~   81 (268)
T 3v48_A           14 DAPVVVLISGLGGS--GSYWLPQLAVLEQ-EYQVVCYDQRGTGNNPDT-------LAEDYSIAQMAAELHQALVAA--GI   81 (268)
T ss_dssp             TCCEEEEECCTTCC--GGGGHHHHHHHHT-TSEEEECCCTTBTTBCCC-------CCTTCCHHHHHHHHHHHHHHT--TC
T ss_pred             CCCEEEEeCCCCcc--HHHHHHHHHHHhh-cCeEEEECCCCCCCCCCC-------ccccCCHHHHHHHHHHHHHHc--CC
Confidence            34789999998543  3466677777765 699999999996654221       011234555555555554431  23


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +++.++||||||.+++.++ .+|+++++.|...+..
T Consensus        82 ~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~  117 (268)
T 3v48_A           82 EHYAVVGHALGALVGMQLALDYPASVTVLISVNGWL  117 (268)
T ss_dssp             CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCS
T ss_pred             CCeEEEEecHHHHHHHHHHHhChhhceEEEEecccc
Confidence            6899999999999999988 8999999999987754

>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A

Probab=98.85  E-value=1.5e-08  Score=100.53  Aligned_cols=118  Identities=13%  Similarity=0.003  Sum_probs=80.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++...+.+            .|.||++||.+...  ..|...+..|++. |.|+.+|+||.|......    ....
T Consensus        16 ~g~~l~~~~~g~------------~~~vv~lHG~~~~~--~~~~~~~~~l~~~-~~vi~~D~~G~G~S~~~~----~~~~   76 (297)
T 2qvb_A           16 AGKRMAYIDEGK------------GDAIVFQHGNPTSS--YLWRNIMPHLEGL-GRLVACDLIGMGASDKLS----PSGP   76 (297)
T ss_dssp             TTEEEEEEEESS------------SSEEEEECCTTCCG--GGGTTTGGGGTTS-SEEEEECCTTSTTSCCCS----SCST
T ss_pred             CCEEEEEEecCC------------CCeEEEECCCCchH--HHHHHHHHHHhhc-CeEEEEcCCCCCCCCCCC----Cccc
Confidence            687777554421            27899999996433  3466667777664 999999999976543210    0011


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCC-CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADE-KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~-~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      .....++..+.+..++++  ++. +++.++|||+||.+++.++ .+|++++++|...|...
T Consensus        77 ~~~~~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~  135 (297)
T 2qvb_A           77 DRYSYGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVT  135 (297)
T ss_dssp             TSSCHHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCS
T ss_pred             cCcCHHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccC
Confidence            113345544444444433  234 7899999999999999998 88999999999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.85  E-value=5.3e-07  Score=91.87  Aligned_cols=246  Identities=4%  Similarity=-0.114  Sum_probs=133.3

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC----EEEEEeC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD----TVIFSNY  162 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d----~l~f~~~  162 (623)
                      ...+..+.|+| +..+........++|...+|.....   +...+..       .-+...+.+..++++    .++++..
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~---~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~l~~~~   87 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG---DLKLLRE-------IEKAKPIKCGTFGATSLQQRYLATGD   87 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS---SEEEEEE-------EEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC---cccceee-------ecccCcEEEEEEcCCCCCCceEEEec
Confidence            45667889998 6566555433223466666765432   2211110       012222344555554    5666766


Q ss_pred             CCCcEEEEeCCCCCCCceecCCCCCCCCeeecce------eeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADG------IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       163 ~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~------~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      .++.|.++|+.++......+...    .......      .|+|+++.|+....+         ..|.++|+.++.. ..
T Consensus        88 ~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~s~~~~~l~~~~~d---------~~i~vwd~~~~~~-~~  153 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEMPVYSVKGH----KEIINAIDGIGGLGIGEGAPEIVTGSRD---------GTVKVWDPRQKDD-PV  153 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCC----SSCEEEEEEESGGGCC-CCCEEEEEETT---------SCEEEECTTSCSS-CS
T ss_pred             CCCeEEEEeCCCCCccEEEEEec----ccceEEEeeccccccCCCccEEEEEeCC---------CeEEEEeCCCCCC-cc
Confidence            78889999998761123444432    1223333      578999988776554         4588889887641 02


Q ss_pred             eecccCCC----ccc----ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979          237 KVLVSGSD----FYA----FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       237 ~~l~~~~~----~~~----~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      ..+.....    ...    .+.|+|||+.|+....        ...|.++|+..+.    ........    ..+..+.|
T Consensus       154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--------d~~i~i~d~~~~~----~~~~~~~~----~~v~~~~~  217 (357)
T 3i2n_A          154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD--------NGDIKLFDLRNMA----LRWETNIK----NGVCSLEF  217 (357)
T ss_dssp             EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET--------TSEEEEEETTTTE----EEEEEECS----SCEEEEEE
T ss_pred             eeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc--------CCeEEEEECccCc----eeeecCCC----CceEEEEc
Confidence            33322111    222    2348999998887652        2358999998762    22223333    45678899


Q ss_pred             CC---CCcEEEEEeCCCCeeeEEEEecCCCeEE-EEe-----ecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          309 SS---KGELFFVTDRKNGFWNLHKWIESNNEVL-AIY-----SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       309 s~---DG~l~~~~~~~~g~~~L~~~d~~~~~~~-~l~-----~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                      +|   ++++++.... +|.-.+  +|..+++.. .+.     .....+..         +.+.   |+++.++++...+|
T Consensus       218 ~~~~~~~~~l~~~~~-dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~v~~---------~~~~---~~~~~~l~~~~~dg  282 (357)
T 3i2n_A          218 DRKDISMNKLVATSL-EGKFHV--FDMRTQHPTKGFASVSEKAHKSTVWQ---------VRHL---PQNRELFLTAGGAG  282 (357)
T ss_dssp             SCSSSSCCEEEEEES-TTEEEE--EEEEEEETTTEEEEEEEECCSSCEEE---------EEEE---TTEEEEEEEEETTS
T ss_pred             CCCCCCCCEEEEECC-CCeEEE--EeCcCCCcccceeeeccCCCcCCEEE---------EEEC---CCCCcEEEEEeCCC
Confidence            99   8885555554 455444  444333211 111     11122222         2333   26665777777788


Q ss_pred             eEEEEEEeC
Q 006979          380 RSYLGILDD  388 (623)
Q Consensus       380 ~~~L~~~d~  388 (623)
                      .-+||.++.
T Consensus       283 ~i~iwd~~~  291 (357)
T 3i2n_A          283 GLHLWKYEY  291 (357)
T ss_dssp             EEEEEEEEC
T ss_pred             cEEEeecCC
Confidence            877777764

>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A

Probab=98.84  E-value=1.9e-08  Score=102.09  Aligned_cols=99  Identities=15%  Similarity=0.083  Sum_probs=72.5

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC-C
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE-K  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~-~  574 (623)
                      |.||++||.+...  ..|...+..|++. |.|+++|+||.|.+...       ..+...+++..+.+..++++  .+. +
T Consensus        44 ~~vvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~GhG~S~~~-------~~~~~~~~~~a~dl~~ll~~--l~~~~  111 (318)
T 2psd_A           44 NAVIFLHGNATSS--YLWRHVVPHIEPV-ARCIIPDLIGMGKSGKS-------GNGSYRLLDHYKYLTAWFEL--LNLPK  111 (318)
T ss_dssp             SEEEEECCTTCCG--GGGTTTGGGTTTT-SEEEEECCTTSTTCCCC-------TTSCCSHHHHHHHHHHHHTT--SCCCS
T ss_pred             CeEEEECCCCCcH--HHHHHHHHHhhhc-CeEEEEeCCCCCCCCCC-------CCCccCHHHHHHHHHHHHHh--cCCCC
Confidence            6799999985433  3566667777665 69999999997654332       11223466666666666655  233 7


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                      ++.|+||||||.+++.++ .+|++++++|...+
T Consensus       112 ~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~  144 (318)
T 2psd_A          112 KIIFVGHDWGAALAFHYAYEHQDRIKAIVHMES  144 (318)
T ss_dssp             SEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred             CeEEEEEChhHHHHHHHHHhChHhhheEEEecc
Confidence            999999999999999998 89999999998653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.84  E-value=2.2e-06  Score=89.53  Aligned_cols=238  Identities=8%  Similarity=-0.013  Sum_probs=137.0

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+..++++ ..+++...++.|.++|+.++ ...+.+...    ........|  +++.++....+         ..|.+
T Consensus       137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~----~~~v~~~~~--~~~~l~~~~~d---------g~i~i  200 (401)
T 4aez_A          137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQ-TKLRTMAGH----QARVGCLSW--NRHVLSSGSRS---------GAIHH  200 (401)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCC----SSCEEEEEE--ETTEEEEEETT---------SEEEE
T ss_pred             EEEEEECCCCCEEEEECCCCeEEEEECcCC-eEEEEecCC----CCceEEEEE--CCCEEEEEcCC---------CCEEE
Confidence            445666655 45555557888999999876 233444432    334556667  45666655443         56889


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      +|+..... ....+......+....|+|||++|+....+.        .|.++|+..+.   ....+.+..    ..+..
T Consensus       201 ~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--------~v~iwd~~~~~---~~~~~~~~~----~~v~~  264 (401)
T 4aez_A          201 HDVRIANH-QIGTLQGHSSEVCGLAWRSDGLQLASGGNDN--------VVQIWDARSSI---PKFTKTNHN----AAVKA  264 (401)
T ss_dssp             EETTSSSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTCSS---EEEEECCCS----SCCCE
T ss_pred             EecccCcc-eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC--------eEEEccCCCCC---ccEEecCCc----ceEEE
Confidence            99874321 0233444444566788999999888776432        38888988763   233344444    56788


Q ss_pred             ceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE-ECCeEEE
Q 006979          306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYL  383 (623)
Q Consensus       306 ~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~-~~g~~~L  383 (623)
                      +.|+|+|. ++..... .....|..+|..+++..........+....|++            +++.++.+.. .+|.-++
T Consensus       265 ~~~~p~~~~ll~~~~g-s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~------------~~~~l~~~~g~~dg~i~v  331 (401)
T 4aez_A          265 VAWCPWQSNLLATGGG-TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP------------HSKEIMSTHGFPDNNLSI  331 (401)
T ss_dssp             EEECTTSTTEEEEECC-TTTCEEEEEETTTCCEEEEEECSSCEEEEEECS------------SSSEEEEEECTTTCEEEE
T ss_pred             EEECCCCCCEEEEecC-CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC------------CCCeEEEEeecCCCcEEE
Confidence            99999988 6665531 123457777887776544443333333334432            6666665532 4565555


Q ss_pred             EEEeCCCCceee---cccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          384 GILDDFGHSLSL---LDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       384 ~~~d~~~~~~~~---lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      |.+  .+++...   +......+..+  ++++..++. ++.   ...|...++.+++
T Consensus       332 ~~~--~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s-~~~---dg~i~iw~~~~~~  382 (401)
T 4aez_A          332 WSY--SSSGLTKQVDIPAHDTRVLYSALSPDGRILST-AAS---DENLKFWRVYDGD  382 (401)
T ss_dssp             EEE--ETTEEEEEEEEECCSSCCCEEEECTTSSEEEE-ECT---TSEEEEEECCC--
T ss_pred             Eec--CCccceeEEEecCCCCCEEEEEECCCCCEEEE-EeC---CCcEEEEECCCCc
Confidence            544  4444332   22333334444  566665543 322   2467788887765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.84  E-value=1.8e-07  Score=97.92  Aligned_cols=203  Identities=10%  Similarity=0.011  Sum_probs=119.6

Q ss_pred             CceEEEeC-C-EEEEEeCCCCcEEEEeCCCCCC------CceecCCCCCCCCeeecceeeCCCCC-EEEEEEeccCCCCC
Q 006979          147 GGAFRIFG-D-TVIFSNYKDQRLYKHSIDSKDS------SPLPITPDYGEPLVSYADGIFDPRFN-RYVTVREDRRQDAL  217 (623)
Q Consensus       147 ~~~~~~s~-d-~l~f~~~~~~~l~~~d~~~g~~------~~~~Lt~~~~~~~~~~~d~~~sPdG~-~l~~v~~~~~~~~~  217 (623)
                      +.+..+++ + .++++...++.|.++++.++..      ....+...    ........|+|+|+ .|+....+      
T Consensus        84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~p~~~~~l~s~~~d------  153 (402)
T 2aq5_A           84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH----TKRVGIVAWHPTAQNVLLSAGCD------  153 (402)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC----SSCEEEEEECSSBTTEEEEEETT------
T ss_pred             EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC----CCeEEEEEECcCCCCEEEEEcCC------
Confidence            45666665 3 5677777788899999886510      12223322    34466788999985 55444333      


Q ss_pred             CceeEEEEEEcCCCCcccceec--ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE-cC
Q 006979          218 NSTTEIVAIALNGQNIQEPKVL--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AG  294 (623)
Q Consensus       218 ~~~~~L~~idl~~g~~~~~~~l--~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~-~~  294 (623)
                         ..|.++|+.+++.  ...+  ....+.+....|+|||+.|+....+        ..|.++|+..+.   ....+ ..
T Consensus       154 ---g~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~---~~~~~~~~  217 (402)
T 2aq5_A          154 ---NVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSCRD--------KRVRVIEPRKGT---VVAEKDRP  217 (402)
T ss_dssp             ---SCEEEEETTTTEE--EEEECTTTCCSCEEEEEECTTSSCEEEEETT--------SEEEEEETTTTE---EEEEEECS
T ss_pred             ---CEEEEEECCCCCc--cEEEecCCCCCceEEEEECCCCCEEEEEecC--------CcEEEEeCCCCc---eeeeeccC
Confidence               4588899988762  3344  3334456678899999988877633        358999988762   23333 33


Q ss_pred             CCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE-EEEe--ecccccccccccccCcceeEEeecCCCCEE
Q 006979          295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV-LAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLI  371 (623)
Q Consensus       295 ~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~-~~l~--~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l  371 (623)
                      .. .  ..+....|+|||++++..........|..+|..+++. ..+.  .....+....         +.   ++++.+
T Consensus       218 ~~-~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~---------~s---~~~~~l  282 (402)
T 2aq5_A          218 HE-G--TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF---------FD---PDTNIV  282 (402)
T ss_dssp             SC-S--SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE---------EE---TTTTEE
T ss_pred             CC-C--CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE---------Ec---CCCCEE
Confidence            32 1  2367889999998555542112345677778766542 1111  1111222222         22   377877


Q ss_pred             EEEEEECCeEEEEEEeCCCCc
Q 006979          372 ACSYRQNGRSYLGILDDFGHS  392 (623)
Q Consensus       372 ~~~~~~~g~~~L~~~d~~~~~  392 (623)
                      +++...+|.-++|-+  .+++
T Consensus       283 ~~~g~~dg~i~i~d~--~~~~  301 (402)
T 2aq5_A          283 YLCGKGDSSIRYFEI--TSEA  301 (402)
T ss_dssp             EEEETTCSCEEEEEE--CSST
T ss_pred             EEEEcCCCeEEEEEe--cCCC
Confidence            777655666555544  4444

>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A*

Probab=98.84  E-value=4.6e-09  Score=103.82  Aligned_cols=102  Identities=14%  Similarity=0.029  Sum_probs=68.7

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCc-cchHHHHHHHHHHHHhCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG-IVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g-~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      |.||++||.+.  ....|...+..|++ +|.|+++|+||.|.+...-.+. ...+. ....+|+.+.++.+      +.+
T Consensus        21 ~~vvllHG~~~--~~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~~~-~~~~~~~~~a~dl~~~l~~l------~~~   90 (271)
T 1wom_A           21 ASIMFAPGFGC--DQSVWNAVAPAFEE-DHRVILFDYVGSGHSDLRAYDL-NRYQTLDGYAQDVLDVCEAL------DLK   90 (271)
T ss_dssp             SEEEEECCTTC--CGGGGTTTGGGGTT-TSEEEECCCSCCSSSCCTTCCT-TGGGSHHHHHHHHHHHHHHT------TCS
T ss_pred             CcEEEEcCCCC--chhhHHHHHHHHHh-cCeEEEECCCCCCCCCCCcccc-cccccHHHHHHHHHHHHHHc------CCC
Confidence            78999999843  33456666777766 6999999999977653210000 00000 01134444444433      246


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ++.++||||||.+++.++ .+|++++++|...+.
T Consensus        91 ~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~  124 (271)
T 1wom_A           91 ETVFVGHSVGALIGMLASIRRPELFSHLVMVGPS  124 (271)
T ss_dssp             CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred             CeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCC
Confidence            899999999999999988 899999999988764

>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11

Probab=98.83  E-value=1.7e-08  Score=101.11  Aligned_cols=102  Identities=12%  Similarity=0.105  Sum_probs=71.8

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+..  ...|...+..|+++ |.|+++|.||.|.+... .  . ........++..+.+..++++  ...++
T Consensus        30 ~~lvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~-~--~-~~~~~~~~~~~a~dl~~ll~~--l~~~~  100 (294)
T 1ehy_A           30 PTLLLLHGWPGF--WWEWSKVIGPLAEH-YDVIVPDLRGFGDSEKP-D--L-NDLSKYSLDKAADDQAALLDA--LGIEK  100 (294)
T ss_dssp             SEEEEECCSSCC--GGGGHHHHHHHHTT-SEEEEECCTTSTTSCCC-C--T-TCGGGGCHHHHHHHHHHHHHH--TTCCC
T ss_pred             CEEEEECCCCcc--hhhHHHHHHHHhhc-CEEEecCCCCCCCCCCC-c--c-ccccCcCHHHHHHHHHHHHHH--cCCCC
Confidence            579999999643  34667778888876 99999999997665431 0  0 000012344444444444433  12368


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                      +.++|||+||.+++.++ .+|++++++|...+
T Consensus       101 ~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~  132 (294)
T 1ehy_A          101 AYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDP  132 (294)
T ss_dssp             EEEEEETHHHHHHHHHHHHTGGGEEEEEEECC
T ss_pred             EEEEEeChhHHHHHHHHHhChhheeEEEEecC
Confidence            99999999999999988 89999999999885

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.82  E-value=4.1e-07  Score=89.50  Aligned_cols=235  Identities=11%  Similarity=0.022  Sum_probs=138.0

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCC--CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~--~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      .|+|++.  +.|++++++++  ..+.+...  ...+..+...+.|+|+++.|+++....        ..|++++++++. 
T Consensus         3 ~l~~~~~--~~I~~~~~~g~--~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~--------~~I~~~~~~g~~-   69 (267)
T 1npe_A            3 HLLFAQT--GKIERLPLERN--TMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE--------PSIGRASLHGGE-   69 (267)
T ss_dssp             EEEEEEE--EEEEEEEESSS--CBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT--------TEEEEEESSSCC-
T ss_pred             EEEEEcC--CeEEEEEecCc--ccccccceeeecCCCCcEEEEEEecCCCEEEEEECCC--------CEEEEEecCCCC-
Confidence            3667653  46999999865  33221100  000123445788999988888765422        679999998875 


Q ss_pred             ccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          234 QEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       234 ~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                        .+.+. .+........++|++++|++....       ...|+++++++..   ...+.....    ..+....++|++
T Consensus        70 --~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~-------~~~I~~~~~~g~~---~~~~~~~~~----~~P~~i~vd~~~  133 (267)
T 1npe_A           70 --PTTIIRQDLGSPEGIALDHLGRTIFWTDSQ-------LDRIEVAKMDGTQ---RRVLFDTGL----VNPRGIVTDPVR  133 (267)
T ss_dssp             --CEEEECTTCCCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCS---CEEEECSSC----SSEEEEEEETTT
T ss_pred             --cEEEEECCCCCccEEEEEecCCeEEEEECC-------CCEEEEEEcCCCC---EEEEEECCC----CCccEEEEeeCC
Confidence              44443 222334456799999989887632       3468999987652   222332221    234577899976


Q ss_pred             cEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (623)
Q Consensus       313 ~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~  392 (623)
                      ..+|+++.......|+++++++...+.+...  .+..      ...+.+.   ++++.||++..  +...|+++|++++.
T Consensus       134 g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~--~~~~------P~gia~d---~~~~~lyv~d~--~~~~I~~~~~~g~~  200 (267)
T 1npe_A          134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQD--NLGL------PNGLTFD---AFSSQLCWVDA--GTHRAECLNPAQPG  200 (267)
T ss_dssp             TEEEEEECCSSSCEEEEEETTSCCCEEEECT--TCSC------EEEEEEE---TTTTEEEEEET--TTTEEEEEETTEEE
T ss_pred             CEEEEEECCCCCcEEEEEecCCCCcEEEEEC--CCCC------CcEEEEc---CCCCEEEEEEC--CCCEEEEEecCCCc
Confidence            5444455422346788888876554444322  1111      1234443   26788888764  44578999998765


Q ss_pred             eeecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          393 LSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       393 ~~~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      .+.+......-..+..+++.+|+....   ...|++++.++++
T Consensus       201 ~~~~~~~~~~P~gi~~d~~~lyva~~~---~~~v~~~d~~~g~  240 (267)
T 1npe_A          201 RRKVLEGLQYPFAVTSYGKNLYYTDWK---TNSVIAMDLAISK  240 (267)
T ss_dssp             EEEEEECCCSEEEEEEETTEEEEEETT---TTEEEEEETTTTE
T ss_pred             eEEEecCCCCceEEEEeCCEEEEEECC---CCeEEEEeCCCCC
Confidence            544332222223445567777775432   2478999988775

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.82  E-value=1.2e-06  Score=95.77  Aligned_cols=251  Identities=9%  Similarity=0.009  Sum_probs=137.7

Q ss_pred             eEEEeC----C--EEEEEeCCCCcEEEEeCCCCCCCceecCCCC---C----CCCeeecceeeCCCCCEEEEEEeccCCC
Q 006979          149 AFRIFG----D--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---G----EPLVSYADGIFDPRFNRYVTVREDRRQD  215 (623)
Q Consensus       149 ~~~~s~----d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~---~----~~~~~~~d~~~sPdG~~l~~v~~~~~~~  215 (623)
                      .+++++    |  .++..+..++.|.++|..++ ...+.+....   +    .+..+.....+||+++++++.....   
T Consensus       226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~---  301 (543)
T 1nir_A          226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET---  301 (543)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT---
T ss_pred             eEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC---
Confidence            445555    4  56666656788999998876 2223332210   0    0112455678999998877654322   


Q ss_pred             CCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEc-C
Q 006979          216 ALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-G  294 (623)
Q Consensus       216 ~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~-~  294 (623)
                           +.|+++|..+++...+..+. ...+.....|||||++|+.....       ...|.++|+.++.   ....+. +
T Consensus       302 -----g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~-------~~~v~v~D~~tg~---l~~~i~~g  365 (543)
T 1nir_A          302 -----GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANN-------SNKVAVIDSKDRR---LSALVDVG  365 (543)
T ss_dssp             -----TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGG-------GTEEEEEETTTTE---EEEEEECS
T ss_pred             -----CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecC-------CCeEEEEECCCCe---EEEeeccC
Confidence                 67999999876421112232 23455567899999988655422       2358889988763   222222 2


Q ss_pred             CCCCccccCcCcee-CCCCc-EEEEEeCCCCeeeEEEEecCC-------CeE-EEEeecccccccccccccCcceeEEee
Q 006979          295 FDPTIVESPTEPKW-SSKGE-LFFVTDRKNGFWNLHKWIESN-------NEV-LAIYSLDAEFSRPLWVFGINSYEIIQS  364 (623)
Q Consensus       295 ~~~~~~~~~~~~~w-s~DG~-l~~~~~~~~g~~~L~~~d~~~-------~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~  364 (623)
                      ..+   .......| +||+. ++.....  +...|.++|.++       .+. +.+....    ...+     .+.   .
T Consensus       366 ~~p---h~g~g~~~~~p~~g~~~~s~~~--~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g----~~~~-----~v~---~  428 (543)
T 1nir_A          366 KTP---HPGRGANFVHPKYGPVWSTSHL--GDGSISLIGTDPKNHPQYAWKKVAELQGQG----GGSL-----FIK---T  428 (543)
T ss_dssp             SSB---CCTTCEEEEETTTEEEEEEEBS--SSSEEEEEECCTTTCTTTBTSEEEEEECSC----SCCC-----CEE---C
T ss_pred             CCC---CCCCCcccCCCCCccEEEeccC--CCceEEEEEeCCCCCchhcCeEEEEEEcCC----CCce-----EEE---c
Confidence            110   11122334 57755 5444333  333466666655       332 2332111    0000     112   2


Q ss_pred             cCCCCEEEEEEE--EC--CeEEEEEEeCCCCcee--ecc--------cCCcceEe--eeecCCEEEEEEecC-CCCCeEE
Q 006979          365 HGEKNLIACSYR--QN--GRSYLGILDDFGHSLS--LLD--------IPFTDIDN--ITLGNDCLFVEGASG-VEPSSVA  427 (623)
Q Consensus       365 s~~~~~l~~~~~--~~--g~~~L~~~d~~~~~~~--~lt--------~~~~~v~~--~~~~~~~~~~~~~s~-~~~~~ly  427 (623)
                      +|+++.||....  .+  ....|.++|.++++..  .|.        .+...+..  ++++++++++..-+. .....|.
T Consensus       429 ~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~  508 (543)
T 1nir_A          429 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALV  508 (543)
T ss_dssp             CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEE
T ss_pred             CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEE
Confidence            348888776542  11  1346888898876643  331        21122333  388999999876433 4467899


Q ss_pred             EEEcCCCcc
Q 006979          428 KVTLDDHKL  436 (623)
Q Consensus       428 ~~~l~~~~~  436 (623)
                      ++|.+++++
T Consensus       509 v~D~~t~~~  517 (543)
T 1nir_A          509 VVDDKTLKL  517 (543)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCceE
Confidence            999988874

>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A

Probab=98.82  E-value=2.1e-08  Score=100.05  Aligned_cols=118  Identities=11%  Similarity=0.015  Sum_probs=81.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++...+.+            .|.||++||.+...  ..|...+..|+++ |.|+.+|+||.|......    ....
T Consensus        17 ~g~~l~~~~~g~------------~~~vv~lHG~~~~~--~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~----~~~~   77 (302)
T 1mj5_A           17 KGRRMAYIDEGT------------GDPILFQHGNPTSS--YLWRNIMPHCAGL-GRLIACDLIGMGDSDKLD----PSGP   77 (302)
T ss_dssp             TTEEEEEEEESC------------SSEEEEECCTTCCG--GGGTTTGGGGTTS-SEEEEECCTTSTTSCCCS----SCST
T ss_pred             CCEEEEEEEcCC------------CCEEEEECCCCCch--hhhHHHHHHhccC-CeEEEEcCCCCCCCCCCC----CCCc
Confidence            687777544421            37899999995433  3566667777765 799999999976543210    0011


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCC-CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADE-KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~-~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      .....+|..+.+..++++  ++. +++.++|||+||.+++.++ .+|++++++|..+|...
T Consensus        78 ~~~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~  136 (302)
T 1mj5_A           78 ERYAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAM  136 (302)
T ss_dssp             TSSCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCS
T ss_pred             ccccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCC
Confidence            123455555555554443  234 7999999999999999998 88999999999988763

>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}

Probab=98.81  E-value=2.7e-09  Score=100.48  Aligned_cols=93  Identities=14%  Similarity=0.016  Sum_probs=62.8

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcC--ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~--G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      |+||++||...+..........+++.++  ||.|++||++|.   |++                ..+.++.++++  .++
T Consensus         3 ptIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~pdl~~~---g~~----------------~~~~l~~~~~~--~~~   61 (202)
T 4fle_A            3 STLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQLPPY---PAE----------------AAEMLESIVMD--KAG   61 (202)
T ss_dssp             CEEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECCCCCSS---HHH----------------HHHHHHHHHHH--HTT
T ss_pred             cEEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEeCCCCC---HHH----------------HHHHHHHHHHh--cCC
Confidence            8999999963332222223456667665  599999999984   332                22233333332  235


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ++|+|+|+|+||++++.++ .+++...+++...+..+
T Consensus        62 ~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~   98 (202)
T 4fle_A           62 QSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFE   98 (202)
T ss_dssp             SCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHH
T ss_pred             CcEEEEEEChhhHHHHHHHHHhcccchheeeccchHH
Confidence            7999999999999999999 78888777766655443

>4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp}

Probab=98.81  E-value=3.4e-08  Score=103.17  Aligned_cols=118  Identities=15%  Similarity=0.039  Sum_probs=86.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcC---------ceEEEEECCCCCCCCchh
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR---------GWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~---------G~~v~~~d~rGs~~~g~~  541 (623)
                      +|..|+.....+.+        +..|.||++||.+.+.  ..|...+..|++.         ||.|+++|+||.|.+...
T Consensus        76 ~g~~i~~~~~~~~~--------~~~~plll~HG~~~s~--~~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G~G~S~~~  145 (388)
T 4i19_A           76 DGATIHFLHVRSPE--------PDATPMVITHGWPGTP--VEFLDIIGPLTDPRAHGGDPADAFHLVIPSLPGFGLSGPL  145 (388)
T ss_dssp             TTEEEEEEEECCSS--------TTCEEEEEECCTTCCG--GGGHHHHHHHHCGGGGTSCGGGCEEEEEECCTTSGGGCCC
T ss_pred             CCeEEEEEEccCCC--------CCCCeEEEECCCCCCH--HHHHHHHHHHhCcccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            78999976665543        2346789999996543  3566778888886         999999999995543221


Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                           ..  .....+++.+.+..+.++  ...+++.++|||+||.+++.++ .+|+.++++|...|.
T Consensus       146 -----~~--~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~  203 (388)
T 4i19_A          146 -----KS--AGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQ  203 (388)
T ss_dssp             -----SS--CCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCC
T ss_pred             -----CC--CCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCC
Confidence                 11  123456666666665544  2346899999999999999999 899999999998864

>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A*

Probab=98.81  E-value=1.1e-09  Score=120.00  Aligned_cols=128  Identities=20%  Similarity=0.229  Sum_probs=83.9

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHHcC-ceEEEEECCCCCC-CCchhHHHhhccCC
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSR-GWAFVDVNYGGST-GYGREFRERLLGRW  550 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~-G~~v~~~d~rGs~-~~g~~~~~~~~~~~  550 (623)
                      .++..+|.|...... ..+++.|+||++|||....... .+.  ...|+++ |++|+.+|||-.. ||...-   .....
T Consensus       111 cL~l~v~~P~~~~~~-~~~~~~Pv~v~iHGGg~~~g~~~~~~--~~~la~~~~~vvv~~~YRl~~~Gfl~~~---~~~~~  184 (574)
T 3bix_A          111 CLYLNIYVPTEDDIR-DSGGPKPVMVYIHGGSYMEGTGNLYD--GSVLASYGNVIVITVNYRLGVLGFLSTG---DQAAK  184 (574)
T ss_dssp             CCEEEEEEEC---------CCEEEEEECCCSSSSSCCGGGSC--CHHHHHHHTCEEEEECCCCHHHHHCCCS---SSSCC
T ss_pred             CCEEEEEECCCCCcC-CCCCCCcEEEEECCCcccCCCCCccC--chhhhccCCEEEEEeCCcCcccccCcCC---CCCCC
Confidence            466677888652100 0135689999999996543322 232  2456765 6999999999421 111000   00112


Q ss_pred             ccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cC--C-CceeEEEecccC
Q 006979          551 GIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AF--R-DTFKAGASLYGV  607 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~--~-~~f~a~v~~~g~  607 (623)
                      +...+.|+.+|++|+.++-   -.||+||.|+|.|+||.+++.++ ..  . .+|+.+|+.+|.
T Consensus       185 ~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~  248 (574)
T 3bix_A          185 GNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT  248 (574)
T ss_dssp             CCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred             CcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence            3345899999999998852   27999999999999999999887 33  2 689999998863

>1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10

Probab=98.80  E-value=2.3e-08  Score=100.19  Aligned_cols=102  Identities=15%  Similarity=0.136  Sum_probs=69.6

Q ss_pred             CEEEEecCCC-CCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh-CCCCCC
Q 006979          496 PLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG-SGKADE  573 (623)
Q Consensus       496 Pliv~~hGg~-~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~-~~~~d~  573 (623)
                      |.||++||.. .......|...+..|++. |.|+++|+||.|.+. .     ..  .....++..+.+..+++ .+ + .
T Consensus        37 ~~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~Dl~G~G~S~-~-----~~--~~~~~~~~~~dl~~~l~~l~-~-~  105 (296)
T 1j1i_A           37 QPVILIHGGGAGAESEGNWRNVIPILARH-YRVIAMDMLGFGKTA-K-----PD--IEYTQDRRIRHLHDFIKAMN-F-D  105 (296)
T ss_dssp             SEEEEECCCSTTCCHHHHHTTTHHHHTTT-SEEEEECCTTSTTSC-C-----CS--SCCCHHHHHHHHHHHHHHSC-C-S
T ss_pred             CeEEEECCCCCCcchHHHHHHHHHHHhhc-CEEEEECCCCCCCCC-C-----CC--CCCCHHHHHHHHHHHHHhcC-C-C
Confidence            5789999973 223334455667777765 999999999966543 1     00  11234444444433333 22 2 2


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +++.++||||||.+++.++ .+|++++++|...+..
T Consensus       106 ~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~  141 (296)
T 1j1i_A          106 GKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAG  141 (296)
T ss_dssp             SCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCB
T ss_pred             CCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCC
Confidence            6899999999999999988 8999999999887754

>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A

Probab=98.80  E-value=1.7e-08  Score=98.70  Aligned_cols=96  Identities=17%  Similarity=0.085  Sum_probs=69.0

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      .|.||++||.+..  ...|...+..|+++ |.|+++|+||.|.+...      ..+.. ...+|+.+.++.+   +   .
T Consensus        16 ~~~vvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~------~~~~~~~~a~dl~~~l~~l---~---~   80 (255)
T 3bf7_A           16 NSPIVLVHGLFGS--LDNLGVLARDLVND-HNIIQVDVRNHGLSPRE------PVMNYPAMAQDLVDTLDAL---Q---I   80 (255)
T ss_dssp             CCCEEEECCTTCC--TTTTHHHHHHHTTT-SCEEEECCTTSTTSCCC------SCCCHHHHHHHHHHHHHHH---T---C
T ss_pred             CCCEEEEcCCccc--HhHHHHHHHHHHhh-CcEEEecCCCCCCCCCC------CCcCHHHHHHHHHHHHHHc---C---C
Confidence            3568999998543  34677777888776 99999999997654331      01111 1235555555554   2   3


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecc
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLY  605 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~  605 (623)
                      +++.++||||||.+++.++ .+|++++++|...
T Consensus        81 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~  113 (255)
T 3bf7_A           81 DKATFIGHSMGGKAVMALTALAPDRIDKLVAID  113 (255)
T ss_dssp             SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred             CCeeEEeeCccHHHHHHHHHhCcHhhccEEEEc
Confidence            6899999999999999988 8999999998864

>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis}

Probab=98.79  E-value=3.9e-09  Score=107.49  Aligned_cols=140  Identities=16%  Similarity=0.118  Sum_probs=91.5

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHc------CceEEEEECCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS------RGWAFVDVNYG  533 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~------~G~~v~~~d~r  533 (623)
                      +.+.+++.+..-|.....++|.|.+  |+++ .+++|+|+++||..  .. .......+.++.      .+++|+.+++.
T Consensus        11 ~v~~~~~~S~~l~~~r~~~VylP~~--y~~~-~~~yPVlylldG~~--~f-~~~~~~~~~l~~~~~~~~~~~IvV~i~~~   84 (331)
T 3gff_A           11 EYQSKRLESRLLKETREYVIALPEG--YAQS-LEAYPVVYLLDGED--QF-DHMASLLQFLSQGTMPQIPKVIIVGIHNT   84 (331)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCTT--GGGS-CCCEEEEEESSHHH--HH-HHHHHHHHHHTCSSSCSSCCCEEEEECCS
T ss_pred             eEEEEEEEecCCCCeEEEEEEeCCC--CCCC-CCCccEEEEecChh--hh-HHHHHHHHHHHhhhhcCCCCEEEEEECCC
Confidence            4566777775357889999999988  6542 57899999999962  11 111123344433      36899998762


Q ss_pred             CCCCCchhHHHh--------------hccCCccchHHHHH--HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC
Q 006979          534 GSTGYGREFRER--------------LLGRWGIVDVNDCC--SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD  596 (623)
Q Consensus       534 Gs~~~g~~~~~~--------------~~~~~g~~~~~D~~--~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~  596 (623)
                      .   ..++|...              .....+...+.+.+  .++.++.++..+++.| +|+|+||||++++.++ ++|+
T Consensus        85 ~---R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~  160 (331)
T 3gff_A           85 N---RMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRP  160 (331)
T ss_dssp             S---HHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCS
T ss_pred             C---cccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCch
Confidence            1   11111100              00011222334433  5667777776677766 7999999999999999 8999


Q ss_pred             ceeEEEecccCCC
Q 006979          597 TFKAGASLYGVSI  609 (623)
Q Consensus       597 ~f~a~v~~~g~~d  609 (623)
                      +|+++++.+|...
T Consensus       161 ~F~~~~~~S~~~w  173 (331)
T 3gff_A          161 LFSAYLALDTSLW  173 (331)
T ss_dssp             SCSEEEEESCCTT
T ss_pred             hhheeeEeCchhc
Confidence            9999999999764

>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*

Probab=98.79  E-value=1.6e-08  Score=102.50  Aligned_cols=114  Identities=12%  Similarity=0.024  Sum_probs=78.6

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|..++....-+         + +.|.||++||.+...  ..|...+..|+++ |.|+++|+||.|.+...     ..  
T Consensus        15 ~g~~l~y~~~G~---------g-~~~pvvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~-----~~--   74 (316)
T 3afi_E           15 LGSSMAYRETGA---------Q-DAPVVLFLHGNPTSS--HIWRNILPLVSPV-AHCIAPDLIGFGQSGKP-----DI--   74 (316)
T ss_dssp             TTEEEEEEEESC---------T-TSCEEEEECCTTCCG--GGGTTTHHHHTTT-SEEEEECCTTSTTSCCC-----SS--
T ss_pred             CCEEEEEEEeCC---------C-CCCeEEEECCCCCch--HHHHHHHHHHhhC-CEEEEECCCCCCCCCCC-----CC--
Confidence            577777544321         1 124799999996543  3566677778765 99999999997655321     11  


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                       ....++..+.+..++++  .+.+++.|+|||+||.+++.++ .+|++++++|...+.
T Consensus        75 -~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~  129 (316)
T 3afi_E           75 -AYRFFDHVRYLDAFIEQ--RGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFI  129 (316)
T ss_dssp             -CCCHHHHHHHHHHHHHH--TTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEEC
T ss_pred             -CCCHHHHHHHHHHHHHH--cCCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccC
Confidence             22345555544444443  1236999999999999999999 899999999988753

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.78  E-value=1.1e-06  Score=88.21  Aligned_cols=239  Identities=8%  Similarity=-0.002  Sum_probs=138.2

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.+++++ ..+++...++.|.++|+.++ ...+.+...    ........|+|++++|+....+         ..|.+
T Consensus        16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~l~s~s~d---------~~i~v   81 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQ-VEVRSIQVT----ETPVRAGKFIARKNWIIVGSDD---------FRIRV   81 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECC----SSCEEEEEEEGGGTEEEEEETT---------SEEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCC-ceeEEeecc----CCcEEEEEEeCCCCEEEEECCC---------CEEEE
Confidence            445666666 56666667888999999876 223344332    2335567899999988776554         56888


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      +|+.+++.  +..+....+.+...+|+||+++|+-...|.        .|.+.|+..+..  ....+.+..    ..+..
T Consensus        82 wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~--------~v~lWd~~~~~~--~~~~~~~h~----~~v~~  145 (304)
T 2ynn_A           82 FNYNTGEK--VVDFEAHPDYIRSIAVHPTKPYVLSGSDDL--------TVKLWNWENNWA--LEQTFEGHE----HFVMC  145 (304)
T ss_dssp             EETTTCCE--EEEEECCSSCEEEEEECSSSSEEEEEETTS--------CEEEEEGGGTTE--EEEEECCCC----SCEEE
T ss_pred             EECCCCcE--EEEEeCCCCcEEEEEEcCCCCEEEEECCCC--------eEEEEECCCCcc--hhhhhcccC----CcEEE
Confidence            99988762  334444455666788999999887665443        278888876532  233455544    56678


Q ss_pred             ceeCC-CCcEEEEEeCCCCeeeEEEEecCCCeE-EEEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEE
Q 006979          306 PKWSS-KGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (623)
Q Consensus       306 ~~ws~-DG~l~~~~~~~~g~~~L~~~d~~~~~~-~~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~  382 (623)
                      ..|+| |+.+++.... ++.-+  .+|+..+.. ..+... ...+....|.+       .    .++.++++...++.-+
T Consensus       146 v~~~p~~~~~l~sgs~-D~~v~--iwd~~~~~~~~~~~~~~~~~v~~~~~~~-------~----~~~~~l~s~s~D~~i~  211 (304)
T 2ynn_A          146 VAFNPKDPSTFASGCL-DRTVK--VWSLGQSTPNFTLTTGQERGVNYVDYYP-------L----PDKPYMITASDDLTIK  211 (304)
T ss_dssp             EEECTTCTTEEEEEET-TSEEE--EEETTCSSCSEEEECCCTTCEEEEEECC-------S----TTCCEEEEEETTSEEE
T ss_pred             EEECCCCCCEEEEEeC-CCeEE--EEECCCCCccceeccCCcCcEEEEEEEE-------c----CCCCEEEEEcCCCeEE
Confidence            89999 4555555554 45544  455544432 222211 11111111111       1    2334555666677655


Q ss_pred             EEEEeCCCCce-eecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          383 LGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       383 L~~~d~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      |  +|+.+++. ..+......+..+  ++++.. ++.++..   ..|...++.+++
T Consensus       212 i--Wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~D---g~i~iWd~~~~~  261 (304)
T 2ynn_A          212 I--WDYQTKSCVATLEGHMSNVSFAVFHPTLPI-IISGSED---GTLKIWNSSTYK  261 (304)
T ss_dssp             E--EETTTTEEEEEEECCSSCEEEEEECSSSSE-EEEEETT---SCEEEEETTTCC
T ss_pred             E--EeCCCCccceeeCCCCCCEEEEEECCCCCE-EEEEcCC---CeEEEEECCCCc
Confidence            5  47666653 3444444445444  555553 4444332   346677777665

>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*

Probab=98.78  E-value=1.2e-08  Score=101.25  Aligned_cols=98  Identities=16%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      |.||++||.+.  ....|...+..|++ +|.|+++|+||.|.+...     ...+.. ...+|+.+.++.|      +.+
T Consensus        28 p~vvllHG~~~--~~~~w~~~~~~L~~-~~rvia~DlrGhG~S~~~-----~~~~~~~~~a~dl~~ll~~l------~~~   93 (276)
T 2wj6_A           28 PAILLLPGWCH--DHRVYKYLIQELDA-DFRVIVPNWRGHGLSPSE-----VPDFGYQEQVKDALEILDQL------GVE   93 (276)
T ss_dssp             CEEEEECCTTC--CGGGGHHHHHHHTT-TSCEEEECCTTCSSSCCC-----CCCCCHHHHHHHHHHHHHHH------TCC
T ss_pred             CeEEEECCCCC--cHHHHHHHHHHHhc-CCEEEEeCCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHh------CCC
Confidence            67999999854  33456677777764 699999999996654321     111211 1234555555554      236


Q ss_pred             ceEEEEcChHHHHHHHHh-cC-CCceeEEEecccC
Q 006979          575 RLCITGGSAGGYTTLAAL-AF-RDTFKAGASLYGV  607 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~-~~~f~a~v~~~g~  607 (623)
                      ++.++||||||.+++.++ .+ |+++++.|...+.
T Consensus        94 ~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~  128 (276)
T 2wj6_A           94 TFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWL  128 (276)
T ss_dssp             SEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCC
T ss_pred             ceEEEEECHHHHHHHHHHHHhCHHhhceEEEeccc
Confidence            899999999999999999 88 9999999988653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.78  E-value=1.4e-06  Score=89.93  Aligned_cols=257  Identities=11%  Similarity=0.045  Sum_probs=137.1

Q ss_pred             CEEEEEeCC----CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEecc-CCCCCCceeEEEEEEcC
Q 006979          155 DTVIFSNYK----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALN  229 (623)
Q Consensus       155 d~l~f~~~~----~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~-~~~~~~~~~~L~~idl~  229 (623)
                      ..+|+.+..    ++.|+++|.+++ .....+..+    ..  ..+.+||||++++....-. ........+.+.++|..
T Consensus        45 ~~vyV~~~~~~~~~~~V~ViD~~t~-~v~~~I~vG----~~--P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           45 RRVYVNDPAHFAAVTQQFVIDGEAG-RVIGMIDGG----FL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             TEEEEEECGGGCSSEEEEEEETTTT-EEEEEEEEC----SS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CEEEEEcCcccCCCCEEEEEECCCC-eEEEEEECC----CC--CcEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            367777654    567999999876 223344433    11  1378999999887654210 00000012679999999


Q ss_pred             CCCcccceecccC--C-----CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeE------------
Q 006979          230 GQNIQEPKVLVSG--S-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV------------  290 (623)
Q Consensus       230 ~g~~~~~~~l~~~--~-----~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~------------  290 (623)
                      +.+.  ...+.-+  .     .......+||||++|+......      ...|.++|+.++..+....            
T Consensus       118 t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~------~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~  189 (386)
T 3sjl_D          118 TLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP------APAVGVVDLEGKAFKRMLDVPDCYHIFPTAP  189 (386)
T ss_dssp             TCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS------SCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred             CCeE--EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC------CCeEEEEECCCCcEEEEEECCCcceeecCCC
Confidence            9873  2233211  1     1234467999999987664221      2235555554432100000            


Q ss_pred             --------------EEcCC------------CCCccccCcCceeC-CCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec
Q 006979          291 --------------CVAGF------------DPTIVESPTEPKWS-SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL  343 (623)
Q Consensus       291 --------------~~~~~------------~~~~~~~~~~~~ws-~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~  343 (623)
                                    +..+.            +.+-......+.|. +||+++|++..  |  +++.+|..++..+.+.+-
T Consensus       190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~--g--~V~v~d~~~~~~~v~~~~  265 (386)
T 3sjl_D          190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT--G--KIHQIDLSSGDAKFLPAV  265 (386)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTT--S--EEEEEECTTSSCEECCCE
T ss_pred             ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCC--C--EEEEEECCCCcceeecce
Confidence                          00000            00000011224553 67777776653  3  578888766654333211


Q ss_pred             c---cccccccccccC-cceeEEeecCCCCEEEEEEEEC-------CeEEEEEEeCCCCcee-ecccCCcceEe--eeec
Q 006979          344 D---AEFSRPLWVFGI-NSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSLS-LLDIPFTDIDN--ITLG  409 (623)
Q Consensus       344 ~---~~~~~~~w~~~~-~~~~~l~~s~~~~~l~~~~~~~-------g~~~L~~~d~~~~~~~-~lt~~~~~v~~--~~~~  409 (623)
                      .   .....+.|.++. ..+.+   +++++.+|+....+       ...+|+.+|+.++++. .+..+.. ..+  ++.+
T Consensus       266 ~~~~~~~~~~g~~p~g~q~~a~---~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~-~~~lavs~D  341 (386)
T 3sjl_D          266 EALTEAERADGWRPGGWQQVAY---HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQD  341 (386)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEE---ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-ECEEEECSS
T ss_pred             eccccccccccccCCCcceeeE---CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC-cceEEECCC
Confidence            1   001123455533 23344   34888899887543       3578999999988764 5554432 223  3777


Q ss_pred             CCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          410 NDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       410 ~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ++..+|+...  ....|..+|..+++.
T Consensus       342 ~~~~ly~tn~--~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          342 EKPLLYALST--GDKTLYIHDAESGEE  366 (386)
T ss_dssp             SSCEEEEEET--TTTEEEEEETTTCCE
T ss_pred             CCeEEEEEcC--CCCeEEEEECCCCcE
Confidence            7644454432  245789999988763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.78  E-value=1.5e-07  Score=97.18  Aligned_cols=206  Identities=10%  Similarity=-0.005  Sum_probs=116.7

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.+++++ ..+++...++.|.++|+.++ .....+...    ........|+|+++.++++....        ..|.+
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~~~~~~~~h----~~~v~~v~~s~~~~~~~~s~~~d--------g~v~~  208 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-AVLKSYNAH----SSEVNCVAACPGKDTIFLSCGED--------GRILL  208 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTT-EEEEEECCC----SSCEEEEEECTTCSSCEEEEETT--------SCEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCC----CCCEEEEEEccCCCceeeeeccC--------CceEE
Confidence            445666666 55666667888999999876 223334332    23456678999987554443322        45788


Q ss_pred             EEcCCCCcccceecc--cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          226 IALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       226 idl~~g~~~~~~~l~--~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      +|+.+++.  ...+.  ..........|+||+..++.....+       ..|.++|+..+.   ....+.+..    ..+
T Consensus       209 wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d-------~~i~~wd~~~~~---~~~~~~~~~----~~v  272 (357)
T 4g56_B          209 WDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGDET-------GNVSLVNIKNPD---SAQTSAVHS----QNI  272 (357)
T ss_dssp             CCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEESS-------SCEEEEESSCGG---GCEEECCCS----SCE
T ss_pred             EECCCCce--eeeeeeccccccccchhhhhcccceEEEeecc-------cceeEEECCCCc---EeEEEeccc----eeE
Confidence            89887752  12221  2223345678999976554444222       238888987663   334445444    456


Q ss_pred             cCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEE
Q 006979          304 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (623)
Q Consensus       304 ~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~  382 (623)
                      ....|+|||+ ++..... ++  .|..+|..+++..........+....|+            |.++.++++...+|.-.
T Consensus       273 ~~l~~sp~~~~~lasgs~-D~--~i~iwd~~~~~~~~~~~H~~~V~~vafs------------P~d~~~l~s~s~Dg~v~  337 (357)
T 4g56_B          273 TGLAYSYHSSPFLASISE-DC--TVAVLDADFSEVFRDLSHRDFVTGVAWS------------PLDHSKFTTVGWDHKVL  337 (357)
T ss_dssp             EEEEECSSSSCCEEEEET-TS--CEEEECTTSCEEEEECCCSSCEEEEEEC------------SSSTTEEEEEETTSCEE
T ss_pred             EEEEEcCCCCCEEEEEeC-CC--EEEEEECCCCcEeEECCCCCCEEEEEEe------------CCCCCEEEEEcCCCeEE
Confidence            7889999986 5554443 34  4556688787655443322233333333            23444566666788877


Q ss_pred             EEEEeCCCCceeec
Q 006979          383 LGILDDFGHSLSLL  396 (623)
Q Consensus       383 L~~~d~~~~~~~~l  396 (623)
                      +|.++..+.....+
T Consensus       338 iW~~~~~~~~~~~i  351 (357)
T 4g56_B          338 HHHLPSEGRTENLI  351 (357)
T ss_dssp             EEECC---------
T ss_pred             EEECCCCCcccccc
Confidence            77665444433333

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.78  E-value=1.3e-06  Score=95.41  Aligned_cols=248  Identities=8%  Similarity=0.005  Sum_probs=139.5

Q ss_pred             eEEEeCC-EEEEEeCCCCcEEEEeC--CCCCCCceecCCCCCCCCeeecceeeCC----CCCEEEEEEeccCCCCCCcee
Q 006979          149 AFRIFGD-TVIFSNYKDQRLYKHSI--DSKDSSPLPITPDYGEPLVSYADGIFDP----RFNRYVTVREDRRQDALNSTT  221 (623)
Q Consensus       149 ~~~~s~d-~l~f~~~~~~~l~~~d~--~~g~~~~~~Lt~~~~~~~~~~~d~~~sP----dG~~l~~v~~~~~~~~~~~~~  221 (623)
                      ..++++| +.+|+...++.|.++|+  .++ .....+..+     .......+||    ||++++...+..        .
T Consensus       183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-~~~~~i~~g-----~~p~~va~sp~~~~dg~~l~v~~~~~--------~  248 (543)
T 1nir_A          183 ISRMSASGRYLLVIGRDARIDMIDLWAKEP-TKVAEIKIG-----IEARSVESSKFKGYEDRYTIAGAYWP--------P  248 (543)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSC-EEEEEEECC-----SEEEEEEECCSTTCTTTEEEEEEEES--------S
T ss_pred             eEEECCCCCEEEEECCCCeEEEEECcCCCC-cEEEEEecC-----CCcceEEeCCCcCCCCCEEEEEEccC--------C
Confidence            3445655 44455445688999999  555 223344432     2335678999    999987766532        5


Q ss_pred             EEEEEEcCCCCcccceeccc-C----------CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeE
Q 006979          222 EIVAIALNGQNIQEPKVLVS-G----------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV  290 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~~-~----------~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~  290 (623)
                      .+.++|..+++.  ++.+.. +          ........+|||++.+++.. .+      ...|+++|+.+...+....
T Consensus       249 ~v~v~D~~t~~~--~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-~~------~g~i~vvd~~~~~~l~~~~  319 (543)
T 1nir_A          249 QFAIMDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-KE------TGKVLLVNYKDIDNLTVTS  319 (543)
T ss_dssp             EEEEEETTTCCE--EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-TT------TTEEEEEECTTSSSCEEEE
T ss_pred             eEEEEecccccc--ceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-CC------CCeEEEEEecCCCcceeEE
Confidence            688899988762  222321 1          11234567999999876554 32      3469999998764322112


Q ss_pred             EEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCE
Q 006979          291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL  370 (623)
Q Consensus       291 ~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~  370 (623)
                       +. ..    ..+....|+|||+.++++..  +...|..+|..+++.....+... ...+.+     ...+.  +|+++.
T Consensus       320 -i~-~~----~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~-~ph~g~-----g~~~~--~p~~g~  383 (543)
T 1nir_A          320 -IG-AA----PFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGK-TPHPGR-----GANFV--HPKYGP  383 (543)
T ss_dssp             -EE-CC----SSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSS-SBCCTT-----CEEEE--ETTTEE
T ss_pred             -ec-cC----cCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCC-CCCCCC-----CcccC--CCCCcc
Confidence             22 12    34568899999995555554  23357779999987655443210 001100     11111  125566


Q ss_pred             EEEEEEECCeEEEEEEeCCC-------C-ceeecccCCcceEe--eeecCCEEEEEEe-cCC--CCCeEEEEEcCCCcc
Q 006979          371 IACSYRQNGRSYLGILDDFG-------H-SLSLLDIPFTDIDN--ITLGNDCLFVEGA-SGV--EPSSVAKVTLDDHKL  436 (623)
Q Consensus       371 l~~~~~~~g~~~L~~~d~~~-------~-~~~~lt~~~~~v~~--~~~~~~~~~~~~~-s~~--~~~~ly~~~l~~~~~  436 (623)
                      ++++.. .+...|.++|.++       . .++.|..+......  ++++++++++... ++.  ....|.++|+++++.
T Consensus       384 ~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          384 VWSTSH-LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             EEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             EEEecc-CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence            665543 2333466667665       2 23455543222222  3777777775432 111  134799999988763

>3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A*

Probab=98.78  E-value=2.8e-08  Score=104.83  Aligned_cols=143  Identities=13%  Similarity=0.095  Sum_probs=94.5

Q ss_pred             CcEEEEeecC-CCCeE--EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc--Cc----------------CC-HHh
Q 006979          460 LPELIEFPTE-VPGQK--AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR--GI----------------LN-LSI  517 (623)
Q Consensus       460 ~~~~i~~~~~-~dg~~--i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~--~~----------------~~-~~~  517 (623)
                      ...+|.|.+. .+|..  +.+.++.|.+.      ..+.|+|.+.||.......  +.                +. ...
T Consensus        74 ~a~ri~Y~std~~G~p~~~~gtv~~P~~~------~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~  147 (462)
T 3guu_A           74 ASFQLQYRTTNTQNEAVADVATVWIPAKP------ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPII  147 (462)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEECSSC------CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHH
T ss_pred             eEEEEEEEEECCCCCEEEEEEEEEecCCC------CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHH
Confidence            5567777775 24544  67789999873      2347999999997532211  10                11 245


Q ss_pred             HHH-HcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC-
Q 006979          518 QYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF-  594 (623)
Q Consensus       518 ~~~-a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~-  594 (623)
                      +.| +++||+|+++||+|.|.   .|.....   ....+.|.++++..+.  +.-...|++++|||+||..+++++ .+ 
T Consensus       148 ~~~~l~~G~~Vv~~Dy~G~G~---~y~~~~~---~~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~  219 (462)
T 3guu_A          148 IGWALQQGYYVVSSDHEGFKA---AFIAGYE---EGMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAE  219 (462)
T ss_dssp             HHHHHHTTCEEEEECTTTTTT---CTTCHHH---HHHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCEEEEecCCCCCC---cccCCcc---hhHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhCh
Confidence            667 89999999999999664   2221110   0112344444444443  322347999999999999999887 33 


Q ss_pred             ---CC-ceeEEEecccCCCHHHhhhh
Q 006979          595 ---RD-TFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       595 ---~~-~f~a~v~~~g~~d~~~~~~~  616 (623)
                         |+ .++++++..++.|+......
T Consensus       220 ~yapel~~~g~~~~~~p~dl~~~~~~  245 (462)
T 3guu_A          220 SYAPELNIVGASHGGTPVSAKDTFTF  245 (462)
T ss_dssp             HHCTTSEEEEEEEESCCCBHHHHHHH
T ss_pred             hhcCccceEEEEEecCCCCHHHHHHH
Confidence               33 69999999999999887653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.78  E-value=6.2e-07  Score=88.20  Aligned_cols=203  Identities=11%  Similarity=0.083  Sum_probs=125.1

Q ss_pred             eEEEeC--CEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          149 AFRIFG--DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       149 ~~~~s~--d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      ..++++  +.|++++...+.|++++++++  ..+.+...   .........++|+++.|+++....        ..|+++
T Consensus        40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~--~~~~~~~~---~~~~p~~ia~d~~~~~lyv~d~~~--------~~I~~~  106 (267)
T 1npe_A           40 GLAFDCVDKVVYWTDISEPSIGRASLHGG--EPTTIIRQ---DLGSPEGIALDHLGRTIFWTDSQL--------DRIEVA  106 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSC--CCEEEECT---TCCCEEEEEEETTTTEEEEEETTT--------TEEEEE
T ss_pred             EEEEecCCCEEEEEECCCCEEEEEecCCC--CcEEEEEC---CCCCccEEEEEecCCeEEEEECCC--------CEEEEE
Confidence            345553  489999888888999999865  44433321   012345677999888887765422        579999


Q ss_pred             EcCCCCcccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          227 ALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       227 dl~~g~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      ++++..   .+.+.. +.......+++|++.+|+|..+..     ....|+++++++..   ...+....-    ..+..
T Consensus       107 ~~~g~~---~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-----~~~~I~~~~~dg~~---~~~~~~~~~----~~P~g  171 (267)
T 1npe_A          107 KMDGTQ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-----DNPKIETSHMDGTN---RRILAQDNL----GLPNG  171 (267)
T ss_dssp             ETTSCS---CEEEECSSCSSEEEEEEETTTTEEEEEECCS-----SSCEEEEEETTSCC---CEEEECTTC----SCEEE
T ss_pred             EcCCCC---EEEEEECCCCCccEEEEeeCCCEEEEEECCC-----CCcEEEEEecCCCC---cEEEEECCC----CCCcE
Confidence            998765   344432 223344567999989999886432     13568999887652   222222211    34567


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~  385 (623)
                      +++++|++.+|+++.  +...|+++|+++...+.+...   ...|      ..+.+     +++.+|++..  +...|++
T Consensus       172 ia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~---~~~P------~gi~~-----d~~~lyva~~--~~~~v~~  233 (267)
T 1npe_A          172 LTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEG---LQYP------FAVTS-----YGKNLYYTDW--KTNSVIA  233 (267)
T ss_dssp             EEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEEC---CCSE------EEEEE-----ETTEEEEEET--TTTEEEE
T ss_pred             EEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecC---CCCc------eEEEE-----eCCEEEEEEC--CCCeEEE
Confidence            899998875556665  445799999876554444321   1111      12222     6678888653  3346889


Q ss_pred             EeCCCCce-eecc
Q 006979          386 LDDFGHSL-SLLD  397 (623)
Q Consensus       386 ~d~~~~~~-~~lt  397 (623)
                      +|.++++. +.+.
T Consensus       234 ~d~~~g~~~~~i~  246 (267)
T 1npe_A          234 MDLAISKEMDTFH  246 (267)
T ss_dssp             EETTTTEEEEEEC
T ss_pred             EeCCCCCceEEEc
Confidence            99887654 4443

>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis}

Probab=98.78  E-value=1.3e-08  Score=103.63  Aligned_cols=100  Identities=15%  Similarity=0.056  Sum_probs=69.4

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+...  ..|...+..   .||.|+++|+||.|.....       .......++..+.+..+++.  .+.++
T Consensus        82 ~~vv~~hG~~~~~--~~~~~~~~~---lg~~Vi~~D~~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~~  147 (330)
T 3p2m_A           82 PRVIFLHGGGQNA--HTWDTVIVG---LGEPALAVDLPGHGHSAWR-------EDGNYSPQLNSETLAPVLRE--LAPGA  147 (330)
T ss_dssp             CSEEEECCTTCCG--GGGHHHHHH---SCCCEEEECCTTSTTSCCC-------SSCBCCHHHHHHHHHHHHHH--SSTTC
T ss_pred             CeEEEECCCCCcc--chHHHHHHH---cCCeEEEEcCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHH--hCCCC
Confidence            6799999985433  234444433   4999999999997654321       11223344555444444443  23579


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      +.++|||+||++++.++ .+|++++++|...|...
T Consensus       148 v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~  182 (330)
T 3p2m_A          148 EFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPS  182 (330)
T ss_dssp             CEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHH
T ss_pred             cEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCc
Confidence            99999999999999998 89999999999987644

>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A*

Probab=98.77  E-value=3.6e-08  Score=99.92  Aligned_cols=119  Identities=13%  Similarity=-0.018  Sum_probs=82.7

Q ss_pred             CeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC-HHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       472 g~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~-~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +..+...++.|..  +.   .+..+.||++||....... .|. ...+.|+++||.|+.+|+||.+....          
T Consensus        13 ~~~l~~~i~~p~~--~~---~~~~~~VvllHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~~g~g~~~~----------   76 (317)
T 1tca_A           13 KSVLDAGLTCQGA--SP---SSVSKPILLVPGTGTTGPQ-SFDSNWIPLSTQLGYTPCWISPPPFMLNDT----------   76 (317)
T ss_dssp             HHHHHHTEEETTB--CT---TSCSSEEEEECCTTCCHHH-HHTTTHHHHHHTTTCEEEEECCTTTTCSCH----------
T ss_pred             HHHHhheeeCCCC--CC---CCCCCeEEEECCCCCCcch-hhHHHHHHHHHhCCCEEEEECCCCCCCCcH----------
Confidence            3345555666654  21   2234568899998543221 255 67888999999999999998542111          


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCC---CceeEEEecccCCC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFR---DTFKAGASLYGVSI  609 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~---~~f~a~v~~~g~~d  609 (623)
                       ....+++.+.++++.++-  ..++|.++|||+||.+++.++ .++   +.++++|.++|..+
T Consensus        77 -~~~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~  136 (317)
T 1tca_A           77 -QVNTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK  136 (317)
T ss_dssp             -HHHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred             -HHHHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCC
Confidence             112467788888887652  237999999999999999887 554   78999999988653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.77  E-value=2.4e-06  Score=89.40  Aligned_cols=157  Identities=13%  Similarity=0.068  Sum_probs=100.0

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+..++++ .++++...++.|.++|+.++ .....+...    ........|+|+|+.|+....+         ..|.+
T Consensus       142 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------~~v~i  207 (420)
T 3vl1_A          142 ITKLKFFPSGEALISSSQDMQLKIWSVKDG-SNPRTLIGH----RATVTDIAIIDRGRNVLSASLD---------GTIRL  207 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTC-CCCEEEECC----SSCEEEEEEETTTTEEEEEETT---------SCEEE
T ss_pred             cEEEEECCCCCEEEEEeCCCeEEEEeCCCC-cCceEEcCC----CCcEEEEEEcCCCCEEEEEcCC---------CcEEE
Confidence            445666655 46666667888999999876 344555432    3456678899999988876554         34777


Q ss_pred             EEcCCCCcccceecccC------------------------CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec
Q 006979          226 IALNGQNIQEPKVLVSG------------------------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS  281 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~------------------------~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~  281 (623)
                      +|+.+++.  ...+...                        ........|||||++|+....+.        .|.++|+.
T Consensus       208 wd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~i~d~~  277 (420)
T 3vl1_A          208 WECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG--------VITVHNVF  277 (420)
T ss_dssp             EETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS--------CEEEEETT
T ss_pred             eECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC--------eEEEEECC
Confidence            88877652  2222210                        12234467999999887665332        38888988


Q ss_pred             CCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCe
Q 006979          282 ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                      .+..  ...+..+..    ..+..+.|+|+|+ +++.... +|.  |..+|..+++
T Consensus       278 ~~~~--~~~~~~~~~----~~v~~~~~~~~~~~~l~~g~~-dg~--i~vwd~~~~~  324 (420)
T 3vl1_A          278 SKEQ--TIQLPSKFT----CSCNSLTVDGNNANYIYAGYE-NGM--LAQWDLRSPE  324 (420)
T ss_dssp             TCCE--EEEECCTTS----SCEEEEEECSSCTTEEEEEET-TSE--EEEEETTCTT
T ss_pred             CCce--eEEcccccC----CCceeEEEeCCCCCEEEEEeC-CCe--EEEEEcCCCc
Confidence            7632  122222222    4567899999998 7777665 454  5566776653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.77  E-value=3.9e-06  Score=87.60  Aligned_cols=242  Identities=9%  Similarity=0.081  Sum_probs=134.7

Q ss_pred             eEEEeCCEEEE--EeCCCCcEEEEeCCCCCC---CceecCCCCCCCCeeecceeeCC-CCCEEEEEEeccCCCCCCceeE
Q 006979          149 AFRIFGDTVIF--SNYKDQRLYKHSIDSKDS---SPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTE  222 (623)
Q Consensus       149 ~~~~s~d~l~f--~~~~~~~l~~~d~~~g~~---~~~~Lt~~~~~~~~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~  222 (623)
                      ....+++.+.+  ....++.|.++++...+.   ....+...    .....+..|+| +++.|+....+         ..
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h----~~~V~~~~~~p~~~~~l~s~s~d---------g~  105 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH----TAPVLDIAWCPHNDNVIASGSED---------CT  105 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCC----SSCEEEEEECTTCTTEEEEEETT---------SE
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecC----CCCEEEEEeCCCCCCEEEEEeCC---------Ce
Confidence            35556664433  345677899999864201   11112211    34567889999 88877766543         56


Q ss_pred             EEEEEcCCCCc-----ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE--cCC
Q 006979          223 IVAIALNGQNI-----QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV--AGF  295 (623)
Q Consensus       223 L~~idl~~g~~-----~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~--~~~  295 (623)
                      |.++|+.++..     .....+......+....|+|||+.+++....+       ..|.++|+..+.   ....+  .+.
T Consensus       106 v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-------g~i~iwd~~~~~---~~~~~~~~~~  175 (402)
T 2aq5_A          106 VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-------NVILVWDVGTGA---AVLTLGPDVH  175 (402)
T ss_dssp             EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-------SCEEEEETTTTE---EEEEECTTTC
T ss_pred             EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-------CEEEEEECCCCC---ccEEEecCCC
Confidence            88888877631     11334444445566788999995344443222       238888988762   33344  333


Q ss_pred             CCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEe-eccc--ccccccccccCcceeEEeecCCCCEEE
Q 006979          296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDA--EFSRPLWVFGINSYEIIQSHGEKNLIA  372 (623)
Q Consensus       296 ~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~-~~~~--~~~~~~w~~~~~~~~~l~~s~~~~~l~  372 (623)
                      .    ..+....|+|||++++.... ++  .|..+|+.+++..... ....  .+..         ..+.   ++++.++
T Consensus       176 ~----~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~l~  236 (402)
T 2aq5_A          176 P----DTIYSVDWSRDGALICTSCR-DK--RVRVIEPRKGTVVAEKDRPHEGTRPVH---------AVFV---SEGKILT  236 (402)
T ss_dssp             C----SCEEEEEECTTSSCEEEEET-TS--EEEEEETTTTEEEEEEECSSCSSSCCE---------EEEC---STTEEEE
T ss_pred             C----CceEEEEECCCCCEEEEEec-CC--cEEEEeCCCCceeeeeccCCCCCcceE---------EEEc---CCCcEEE
Confidence            3    46778999999994444443 34  4667788777644332 2111  1222         2333   2554444


Q ss_pred             EEEEECCeEEEEEEeCCCCce--eeccc-CCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          373 CSYRQNGRSYLGILDDFGHSL--SLLDI-PFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       373 ~~~~~~g~~~L~~~d~~~~~~--~~lt~-~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ..........|.++|+.+++.  ..... ....+..+  +++++.+++.+...   ..|..+++.+++
T Consensus       237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d---g~i~i~d~~~~~  301 (402)
T 2aq5_A          237 TGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD---SSIRYFEITSEA  301 (402)
T ss_dssp             EEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC---SCEEEEEECSST
T ss_pred             EeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC---CeEEEEEecCCC
Confidence            332223445677788876543  22221 12223333  77777776665322   367777877766

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.76  E-value=3.4e-07  Score=94.00  Aligned_cols=243  Identities=8%  Similarity=-0.017  Sum_probs=138.6

Q ss_pred             ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcEE
Q 006979           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY  168 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l~  168 (623)
                      .+..+.|+|++.+. .-.   ++|...||....+   +........    ..-|.-.+.+.+++++ ..+++...++.|.
T Consensus        84 ~v~~~~~s~d~~l~-~~s---~dg~v~lWd~~~~---~~~~~~~~~----~~~H~~~V~~v~~spdg~~l~sgs~d~~i~  152 (344)
T 4gqb_B           84 GVADLTWVGERGIL-VAS---DSGAVELWELDEN---ETLIVSKFC----KYEHDDIVSTVSVLSSGTQAVSGSKDICIK  152 (344)
T ss_dssp             CEEEEEEETTTEEE-EEE---TTSEEEEEEECTT---SSCEEEEEE----EECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CEEEEEEeCCCeEE-EEE---CCCEEEEEeccCC---CceeEeecc----ccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            35678888644433 322   3577777766433   221111000    0012222456666666 5666777788899


Q ss_pred             EEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccC--CCcc
Q 006979          169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG--SDFY  246 (623)
Q Consensus       169 ~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~--~~~~  246 (623)
                      ++|+.++ .....+...    ........|+|+++.++++....        ..|.+.|+.+++.  ...+...  ....
T Consensus       153 iwd~~~~-~~~~~~~~h----~~~V~~~~~~~~~~~~l~s~s~D--------~~v~iwd~~~~~~--~~~~~~~~~~~~~  217 (344)
T 4gqb_B          153 VWDLAQQ-VVLSSYRAH----AAQVTCVAASPHKDSVFLSCSED--------NRILLWDTRCPKP--ASQIGCSAPGYLP  217 (344)
T ss_dssp             EEETTTT-EEEEEECCC----SSCEEEEEECSSCTTEEEEEETT--------SCEEEEETTSSSC--EEECC----CCCE
T ss_pred             EEECCCC-cEEEEEcCc----CCceEEEEecCCCCCceeeeccc--------cccccccccccce--eeeeecceeeccc
Confidence            9999876 223334322    33456788999997665544322        4588889988762  3334221  2234


Q ss_pred             cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCee
Q 006979          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW  325 (623)
Q Consensus       247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~  325 (623)
                      ....|+|++..++.....       ...|.++|+..+.   ....+.+..    ..+....|+|||. +++.... ++. 
T Consensus       218 ~~~~~~p~~~~~l~sg~~-------dg~v~~wd~~~~~---~~~~~~~h~----~~v~~v~fsp~g~~~lasgs~-D~~-  281 (344)
T 4gqb_B          218 TSLAWHPQQSEVFVFGDE-------NGTVSLVDTKSTS---CVLSSAVHS----QCVTGLVFSPHSVPFLASLSE-DCS-  281 (344)
T ss_dssp             EEEEECSSCTTEEEEEET-------TSEEEEEESCC-----CCEEEECCS----SCEEEEEECSSSSCCEEEEET-TSC-
T ss_pred             eeeeecCCCCcceEEecc-------CCcEEEEECCCCc---EEEEEcCCC----CCEEEEEEccCCCeEEEEEeC-CCe-
Confidence            457899976655444322       2348888988763   334455554    4567889999986 5554443 344 


Q ss_pred             eEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       326 ~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                       |..+|..+++...+......+....|+            |+++.++.+...++.-.+|.++
T Consensus       282 -i~vwd~~~~~~~~~~~H~~~V~~v~~s------------p~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          282 -LAVLDSSLSELFRSQAHRDFVRDATWS------------PLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             -EEEECTTCCEEEEECCCSSCEEEEEEC------------SSSTTEEEEEETTSCEEEEECC
T ss_pred             -EEEEECCCCcEEEEcCCCCCEEEEEEe------------CCCCeEEEEEcCCCeEEEEECC
Confidence             556688787655443332233333333            3777788777778877776554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.75  E-value=3.8e-06  Score=88.04  Aligned_cols=257  Identities=8%  Similarity=-0.032  Sum_probs=135.9

Q ss_pred             CEEEEEeCCC----CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEecc-CCCCCCceeEEEEEEcC
Q 006979          155 DTVIFSNYKD----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALN  229 (623)
Q Consensus       155 d~l~f~~~~~----~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~-~~~~~~~~~~L~~idl~  229 (623)
                      ..+|+.+...    +.|.++|++++ .....+..+     ..- .+.+||||++++...... ........+.|.++|+.
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~t~-~vv~~I~vG-----~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~  157 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGSTG-RILGMTDGG-----FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV  157 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTT-EEEEEEEEC-----SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CEEEEECCCcCCCCCeEEEEECCCC-EEEEEEECC-----CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence            3566666544    67999999876 233444433     112 588999999887765310 00000012679999999


Q ss_pred             CCCcccceecc-c-CC-----CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcC-------C
Q 006979          230 GQNIQEPKVLV-S-GS-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-------F  295 (623)
Q Consensus       230 ~g~~~~~~~l~-~-~~-----~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~-------~  295 (623)
                      +++.  ...+. . ..     ....+..+||||++|+......      ...|.++|+.+...+.... +.+       .
T Consensus       158 t~~v--v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~------~~~VsVID~~t~kvv~~I~-v~g~~~~~p~g  228 (426)
T 3c75_H          158 TFLP--IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP------APAVGVVDLEGKTFDRMLD-VPDCYHIFPAS  228 (426)
T ss_dssp             TCCE--EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS------SCEEEEEETTTTEEEEEEE-CCSEEEEEEEE
T ss_pred             CCcE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC------CCeEEEEECCCCeEEEEEE-cCCceeeccCC
Confidence            8873  23332 1 11     2234567999999987764321      3458888877653211100 000       0


Q ss_pred             ---------C---------CCcc-------------ccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeec
Q 006979          296 ---------D---------PTIV-------------ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL  343 (623)
Q Consensus       296 ---------~---------~~~~-------------~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~  343 (623)
                               +         ....             .....+.+++||+ ++|.+..  +  .++.+|..++....+.+.
T Consensus       229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~--g--~V~ViD~~~~~~~v~~~~  304 (426)
T 3c75_H          229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT--G--KIFQADLTAEGATFRAPI  304 (426)
T ss_dssp             TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT--S--EEEEEEECSSCEEECCCE
T ss_pred             CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC--C--cEEEEeccCCceEEeeee
Confidence                     0         0000             0001234466666 4444332  2  577777766554433211


Q ss_pred             cc---ccccccccccC-cceeEEeecCCCCEEEEEEEEC-------CeEEEEEEeCCCCce-eecccCCcc-eEeeeecC
Q 006979          344 DA---EFSRPLWVFGI-NSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSL-SLLDIPFTD-IDNITLGN  410 (623)
Q Consensus       344 ~~---~~~~~~w~~~~-~~~~~l~~s~~~~~l~~~~~~~-------g~~~L~~~d~~~~~~-~~lt~~~~~-v~~~~~~~  410 (623)
                      ..   ......|.+.. ..+.+.   ++++++|++....       +...|.++|..+.++ ..+..+... --.+++++
T Consensus       305 ~~~~~~~i~~g~~p~g~~~va~s---~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg  381 (426)
T 3c75_H          305 EALTEAERADDWRPGGWQQTAYH---RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDA  381 (426)
T ss_dssp             ESSCTTTGGGTEEECSSSCEEEE---GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSS
T ss_pred             eeccccccccccccCCceeeEEc---CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCC
Confidence            00   00111233321 223443   3888888876532       356899999988765 455544311 11337788


Q ss_pred             CEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          411 DCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       411 ~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      +..+|+...  ....|.++|+++++.
T Consensus       382 ~~~lyv~n~--~s~~VsVID~~t~kv  405 (426)
T 3c75_H          382 EPLLYALSA--GTQTLHIYDAATGEE  405 (426)
T ss_dssp             SCEEEEEET--TTTEEEEEETTTCCE
T ss_pred             CEEEEEEcC--CCCeEEEEECCCCCE
Confidence            734444432  136799999988874

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.74  E-value=7.4e-06  Score=84.51  Aligned_cols=244  Identities=8%  Similarity=-0.027  Sum_probs=125.2

Q ss_pred             CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCC-CCCCceeEEEEEEcCCCCcccceecccC
Q 006979          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQEPKVLVSG  242 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~-~~~~~~~~L~~idl~~g~~~~~~~l~~~  242 (623)
                      ++.|+++|.+++ .....+..+     ..- .+.+||||++++...+.... ........|.++|+++++.  ...+.-.
T Consensus        30 d~~v~v~D~~t~-~~~~~i~~g-----~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~--~~~i~~~  100 (361)
T 2oiz_A           30 ESRVHVYDYTNG-KFLGMVPTA-----FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF--EKEISLP  100 (361)
T ss_dssp             GCEEEEEETTTC-CEEEEEECC-----EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE--EEEEEEC
T ss_pred             cCeEEEEECCCC-eEEEEecCC-----CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE--EEEEEcC
Confidence            457999998876 222333332     222 67899999998877642110 0001236799999988762  2233211


Q ss_pred             ------CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE-EcCCCCCcc------ccCcCceeC
Q 006979          243 ------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFDPTIV------ESPTEPKWS  309 (623)
Q Consensus       243 ------~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~ws  309 (623)
                            ........+||||++|+......      ...|.++|++++..   ... +.-.. .|.      ........+
T Consensus       101 ~~~~~~g~~p~~i~~spdg~~l~v~n~~~------~~~v~v~d~~~~~~---~~~~i~~~~-~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A          101 PKRVQGLNYDGLFRQTTDGKFIVLQNASP------ATSIGIVDVAKGDY---VEDVTAAAG-CWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             TTBCCBCCCGGGEEECTTSSEEEEEEESS------SEEEEEEETTTTEE---EEEEGGGTT-EEEEEECTTSSSEEEEEE
T ss_pred             ccccccCCCcceEEECCCCCEEEEECCCC------CCeEEEEECCCCcE---EEEEecCCC-cceeEEcCCCCeeEEEEC
Confidence                  12345568999999987664321      34588888876632   111 11000 000      000112334


Q ss_pred             CCCcEEEEEeCCCCe-----------------------------------eeEEEEecCCCeEEEEeec---cccccccc
Q 006979          310 SKGELFFVTDRKNGF-----------------------------------WNLHKWIESNNEVLAIYSL---DAEFSRPL  351 (623)
Q Consensus       310 ~DG~l~~~~~~~~g~-----------------------------------~~L~~~d~~~~~~~~l~~~---~~~~~~~~  351 (623)
                      +||+++++.....+.                                   ..++.+|..+++.+.+...   ........
T Consensus       171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~  250 (361)
T 2oiz_A          171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN  250 (361)
T ss_dssp             TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred             CCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence            455522222110111                                   1245555544332222110   00001122


Q ss_pred             cccc-CcceeEEeecCCCCEEEEEEEEC--------CeEEEEEEeCCCCcee-ecccCCcceEee--eecCCEEEEEEec
Q 006979          352 WVFG-INSYEIIQSHGEKNLIACSYRQN--------GRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGAS  419 (623)
Q Consensus       352 w~~~-~~~~~~l~~s~~~~~l~~~~~~~--------g~~~L~~~d~~~~~~~-~lt~~~~~v~~~--~~~~~~~~~~~~s  419 (623)
                      |.+. ...+.+.   ++++.+|+....+        +...|+++|+++++.. .+..+.  ...+  +++++++|.. ..
T Consensus       251 ~~p~g~~~~a~~---~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~-n~  324 (361)
T 2oiz_A          251 WVPGGYNLVGLH---RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTL-DG  324 (361)
T ss_dssp             CEECCSSCEEEE---TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEE-CS
T ss_pred             cccCCeeEEEEe---cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEe-CC
Confidence            3332 1234444   3778888776522        2357999999887654 455444  3333  7888866643 22


Q ss_pred             CCCCCeEEEEEcCCCcc
Q 006979          420 GVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       420 ~~~~~~ly~~~l~~~~~  436 (623)
                          ..|.++|++++++
T Consensus       325 ----~~v~v~D~~t~~l  337 (361)
T 2oiz_A          325 ----GNVNVYDISQPEP  337 (361)
T ss_dssp             ----SCEEEEECSSSSC
T ss_pred             ----CeEEEEECCCCcc
Confidence                7799999998843

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.74  E-value=2.1e-06  Score=89.44  Aligned_cols=230  Identities=13%  Similarity=0.032  Sum_probs=142.0

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++|..  ...|++++++++  ..+.+...    ..+...+.|++.++.|+++....        ..|++++++++.   
T Consensus        89 ~l~~~~--~~~I~~i~~~~~--~~~~~~~~----~~~~~gl~~d~~~~~ly~~D~~~--------~~I~r~~~~g~~---  149 (386)
T 3v65_B           89 VLLFAN--RIDIRQVLPHRS--EYTLLLNN----LENAIALDFHHRRELVFWSDVTL--------DRILRANLNGSN---  149 (386)
T ss_dssp             EEEEEC--BSCEEEECTTSC--CCEEEECS----CSCEEEEEEETTTTEEEEEETTT--------TEEEEEETTSCC---
T ss_pred             eeEeec--CccceeeccCCC--cEEEEecC----CCccEEEEEecCCCeEEEEeCCC--------CcEEEEecCCCC---
Confidence            466663  356999999876  45555443    23455688999888888865432        679999999876   


Q ss_pred             ceec-ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcE
Q 006979          236 PKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL  314 (623)
Q Consensus       236 ~~~l-~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l  314 (623)
                      .+.+ ..+.....+.++.+.++.|+|....       ...|+++++++..   ...++....    ..+...+.+|++..
T Consensus       150 ~~~~~~~~~~~p~glavd~~~g~lY~~d~~-------~~~I~~~~~dg~~---~~~l~~~~l----~~P~giavdp~~g~  215 (386)
T 3v65_B          150 VEEVVSTGLESPGGLAVDWVHDKLYWTDSG-------TSRIEVANLDGAH---RKVLLWQSL----EKPRAIALHPMEGT  215 (386)
T ss_dssp             EEEEECSSCSCCCCEEEETTTTEEEEEETT-------TTEEEECBTTSCS---CEEEECSSC----SCEEEEEEETTTTE
T ss_pred             cEEEEeCCCCCccEEEEEeCCCeEEEEcCC-------CCeEEEEeCCCCc---eEEeecCCC----CCCcEEEEEcCCCe
Confidence            4443 3333344567788888999988633       3468888887652   233333222    34456788887664


Q ss_pred             EEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979          315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (623)
Q Consensus       315 ~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~  394 (623)
                      +|.++. .....|+++++++...+.+....  +..|      +.+.+-   ++++.|||+.  .+..+|+++|++++..+
T Consensus       216 ly~td~-~~~~~I~r~~~dG~~~~~~~~~~--~~~P------nGlavd---~~~~~lY~aD--~~~~~I~~~d~dG~~~~  281 (386)
T 3v65_B          216 IYWTDW-GNTPRIEASSMDGSGRRIIADTH--LFWP------NGLTID---YAGRRMYWVD--AKHHVIERANLDGSHRK  281 (386)
T ss_dssp             EEEEEC-SSSCEEEEEETTSCSCEEEECSS--CSCE------EEEEEE---GGGTEEEEEE--TTTTEEEEECTTSCSCE
T ss_pred             EEEecc-CCCCEEEEEeCCCCCcEEEEECC--CCCe------eeEEEe---CCCCEEEEEE--CCCCEEEEEeCCCCeeE
Confidence            455565 23378999999876655554321  1111      233443   2678899886  44568999999876655


Q ss_pred             eccc-CCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          395 LLDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       395 ~lt~-~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      .+.. +...-.++..+++.+|++..   ....|++++..+|+
T Consensus       282 ~~~~~~~~~P~giav~~~~ly~td~---~~~~V~~~~~~~G~  320 (386)
T 3v65_B          282 AVISQGLPHPFAITVFEDSLYWTDW---HTKSINSANKFTGK  320 (386)
T ss_dssp             EEECSSCSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             EEEECCCCCceEEEEECCEEEEeeC---CCCeEEEEECCCCc
Confidence            4432 22223344446677777643   23568888854444

>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P

Probab=98.74  E-value=7.1e-08  Score=97.65  Aligned_cols=102  Identities=14%  Similarity=0.100  Sum_probs=71.7

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      |.||++||++.  ....|......|++ .+|.|+++|+||.|.+...    ....+.. ...+|+.+.++.+...  + +
T Consensus        39 p~lvllHG~~~--~~~~w~~~~~~L~~~~~~~via~Dl~GhG~S~~~----~~~~~~~~~~a~dl~~~l~~l~~~--~-~  109 (316)
T 3c5v_A           39 PVLLLLHGGGH--SALSWAVFTAAIISRVQCRIVALDLRSHGETKVK----NPEDLSAETMAKDVGNVVEAMYGD--L-P  109 (316)
T ss_dssp             CEEEEECCTTC--CGGGGHHHHHHHHTTBCCEEEEECCTTSTTCBCS----CTTCCCHHHHHHHHHHHHHHHHTT--C-C
T ss_pred             cEEEEECCCCc--ccccHHHHHHHHhhcCCeEEEEecCCCCCCCCCC----CccccCHHHHHHHHHHHHHHHhcc--C-C
Confidence            67999999843  33456677778876 3899999999997655321    0011211 2356777778777432  1 2


Q ss_pred             CceEEEEcChHHHHHHHHh-c--CCCceeEEEecccC
Q 006979          574 KRLCITGGSAGGYTTLAAL-A--FRDTFKAGASLYGV  607 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~--~~~~f~a~v~~~g~  607 (623)
                      +++.|+||||||.+++.++ .  +|+ ++++|...+.
T Consensus       110 ~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~  145 (316)
T 3c5v_A          110 PPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVV  145 (316)
T ss_dssp             CCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCC
T ss_pred             CCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEccc
Confidence            6899999999999999988 4  466 8888887653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.74  E-value=2e-06  Score=88.25  Aligned_cols=156  Identities=12%  Similarity=0.071  Sum_probs=95.2

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCC--CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDS--SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~--~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      +.+..++++ .++++...++.|+++++.++ .  ....+...    ........|+|+|++|+....+         ..|
T Consensus        11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h----~~~v~~~~~~~~~~~l~~~~~d---------g~i   76 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEH----NGQVTGVDWAPDSNRIVTCGTD---------RNA   76 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECC----SSCEEEEEEETTTTEEEEEETT---------SCE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeCCCC-cEEeeeeecCC----CCcccEEEEeCCCCEEEEEcCC---------CeE
Confidence            456666655 45556656788999998765 1  22333322    3346678899999988876543         447


Q ss_pred             EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE-cCCCCCcccc
Q 006979          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGFDPTIVES  302 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~-~~~~~~~~~~  302 (623)
                      .++|+.+++......+...........|+|||++|+....+.        .|.+++++.+........+ .+..    ..
T Consensus        77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~v~i~d~~~~~~~~~~~~~~~~~~----~~  144 (372)
T 1k8k_C           77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR--------VISICYFEQENDWWVCKHIKKPIR----ST  144 (372)
T ss_dssp             EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS--------SEEEEEEETTTTEEEEEEECTTCC----SC
T ss_pred             EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC--------EEEEEEecCCCcceeeeeeecccC----CC
Confidence            778887765211112233334456688999999988776332        2777787766421112222 2223    45


Q ss_pred             CcCceeCCCCcEEEEEeCCCCeeeEEE
Q 006979          303 PTEPKWSSKGELFFVTDRKNGFWNLHK  329 (623)
Q Consensus       303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~  329 (623)
                      +....|+||+++++.... ++.-.+|-
T Consensus       145 i~~~~~~~~~~~l~~~~~-dg~i~~~d  170 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAAGSC-DFKCRIFS  170 (372)
T ss_dssp             EEEEEECTTSSEEEEEET-TSCEEEEE
T ss_pred             eeEEEEcCCCCEEEEEcC-CCCEEEEE
Confidence            678899999985555554 45544543

>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18

Probab=98.73  E-value=3e-08  Score=99.04  Aligned_cols=101  Identities=13%  Similarity=-0.027  Sum_probs=73.8

Q ss_pred             CCCEEEEecCCCCCcc---cCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          494 KPPLLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~---~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      +.|.||++||......   ...|....+.|.++||.|+.+|++|.+..   .          ...+++.+.++.++++  
T Consensus         6 ~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g~g~s---~----------~~~~~~~~~i~~~~~~--   70 (285)
T 1ex9_A            6 TKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTS---E----------VRGEQLLQQVEEIVAL--   70 (285)
T ss_dssp             CSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSSCH---H----------HHHHHHHHHHHHHHHH--
T ss_pred             CCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCCCCCc---h----------hhHHHHHHHHHHHHHH--
Confidence            4567899999854432   23677788999999999999999985432   1          1234444444444332  


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      .+.++|.++|||+||.+++.++ .+|+.++++|.++++..
T Consensus        71 ~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~~  110 (285)
T 1ex9_A           71 SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPHK  110 (285)
T ss_dssp             HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCTT
T ss_pred             hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCCC
Confidence            1346999999999999999998 78999999999988643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.73  E-value=4.3e-07  Score=104.06  Aligned_cols=239  Identities=9%  Similarity=0.006  Sum_probs=140.3

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.+++++ ..+++...++.|.++|+.++ .....+...    ........|+|+|++|+....+         ..|.+
T Consensus        16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d---------g~i~v   81 (814)
T 3mkq_A           16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-VEVRSIQVT----ETPVRAGKFIARKNWIIVGSDD---------FRIRV   81 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECC----SSCEEEEEEEGGGTEEEEEETT---------SEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceEEEEecC----CCcEEEEEEeCCCCEEEEEeCC---------CeEEE
Confidence            456666666 34444456788999999876 233444432    3456778999999998887553         56899


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      +|+.+++.  ...+....+.+....|||||++|+....+        ..|.+++++++..  ....+.+..    ..+..
T Consensus        82 w~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~vw~~~~~~~--~~~~~~~~~----~~v~~  145 (814)
T 3mkq_A           82 FNYNTGEK--VVDFEAHPDYIRSIAVHPTKPYVLSGSDD--------LTVKLWNWENNWA--LEQTFEGHE----HFVMC  145 (814)
T ss_dssp             EETTTCCE--EEEEECCSSCEEEEEECSSSSEEEEEETT--------SEEEEEEGGGTSE--EEEEEECCS----SCEEE
T ss_pred             EECCCCcE--EEEEecCCCCEEEEEEeCCCCEEEEEcCC--------CEEEEEECCCCce--EEEEEcCCC----CcEEE
Confidence            99988762  34444444556678999999998866522        3488889887632  333444444    45678


Q ss_pred             ceeCC-CCcEEEEEeCCCCeeeEEEEecCCCeEE-EEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEE
Q 006979          306 PKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY  382 (623)
Q Consensus       306 ~~ws~-DG~l~~~~~~~~g~~~L~~~d~~~~~~~-~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~  382 (623)
                      ..|+| ||++++.... ++  .|..+|..+++.. .+... ...+....|.+.          ++++ ++++...+|.  
T Consensus       146 ~~~~p~~~~~l~~~~~-dg--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~~-~l~~~~~dg~--  209 (814)
T 3mkq_A          146 VAFNPKDPSTFASGCL-DR--TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL----------PDKP-YMITASDDLT--  209 (814)
T ss_dssp             EEEETTEEEEEEEEET-TS--EEEEEETTCSSCSEEEECCCTTCCCEEEECCS----------TTCC-EEEEECTTSE--
T ss_pred             EEEEcCCCCEEEEEeC-CC--eEEEEECCCCcceeEEecCCCCCEEEEEEEEC----------CCCC-EEEEEeCCCE--
Confidence            89999 7765555544 34  4556676555432 22221 122333333321          1344 4445545554  


Q ss_pred             EEEEeCCCCce-eecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          383 LGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       383 L~~~d~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      |.++|..+++. ..+......+..+  ++++..++. ++..   ..|+.+++.+++
T Consensus       210 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d---g~v~vwd~~~~~  261 (814)
T 3mkq_A          210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS-GSED---GTLKIWNSSTYK  261 (814)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE-EETT---SCEEEEETTTCS
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE-EeCC---CeEEEEECCCCc
Confidence            55567666654 3444344445544  556664443 3321   356667766654

>3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A*

Probab=98.73  E-value=5.4e-08  Score=95.16  Aligned_cols=104  Identities=9%  Similarity=-0.009  Sum_probs=73.0

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~  571 (623)
                      ....|.||++||.+.  ....|...+..|++. |.|+.+|+||.|.   +..     .......++..+.+..++++  .
T Consensus        17 ~~~~~~vv~~HG~~~--~~~~~~~~~~~l~~~-~~v~~~d~~G~G~---s~~-----~~~~~~~~~~~~~~~~~l~~--~   83 (267)
T 3fla_A           17 PDARARLVCLPHAGG--SASFFFPLAKALAPA-VEVLAVQYPGRQD---RRH-----EPPVDSIGGLTNRLLEVLRP--F   83 (267)
T ss_dssp             TTCSEEEEEECCTTC--CGGGGHHHHHHHTTT-EEEEEECCTTSGG---GTT-----SCCCCSHHHHHHHHHHHTGG--G
T ss_pred             CCCCceEEEeCCCCC--CchhHHHHHHHhccC-cEEEEecCCCCCC---CCC-----CCCCcCHHHHHHHHHHHHHh--c
Confidence            445689999999943  344666777777665 9999999999543   211     11123455555555554443  2


Q ss_pred             CCCceEEEEcChHHHHHHHHh-cCCCc----eeEEEecccCC
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-AFRDT----FKAGASLYGVS  608 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~~~~~----f~a~v~~~g~~  608 (623)
                      +.+++.|+|||+||++++.++ .+|+.    ++++|...+..
T Consensus        84 ~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~  125 (267)
T 3fla_A           84 GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRA  125 (267)
T ss_dssp             TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCC
T ss_pred             CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCc
Confidence            457999999999999999999 78875    78888776653

>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26

Probab=98.73  E-value=3e-08  Score=96.89  Aligned_cols=93  Identities=16%  Similarity=0.108  Sum_probs=68.0

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCce
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL  576 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv  576 (623)
                      .||++||.+.  ....|...+..|+ .+|.|+++|+||.|.+...         .....++.   ++.+.+.  ++ +++
T Consensus        15 ~vvllHG~~~--~~~~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~---------~~~~~~~~---~~~l~~~--l~-~~~   76 (258)
T 1m33_A           15 HLVLLHGWGL--NAEVWRCIDEELS-SHFTLHLVDLPGFGRSRGF---------GALSLADM---AEAVLQQ--AP-DKA   76 (258)
T ss_dssp             EEEEECCTTC--CGGGGGGTHHHHH-TTSEEEEECCTTSTTCCSC---------CCCCHHHH---HHHHHTT--SC-SSE
T ss_pred             eEEEECCCCC--ChHHHHHHHHHhh-cCcEEEEeeCCCCCCCCCC---------CCcCHHHH---HHHHHHH--hC-CCe
Confidence            7899999843  3345666677776 5899999999996654332         12234443   3444443  34 799


Q ss_pred             EEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          577 CITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       577 ~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      .++|||+||.+++.++ .+|++++++|...+.
T Consensus        77 ~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~  108 (258)
T 1m33_A           77 IWLGWSLGGLVASQIALTHPERVRALVTVASS  108 (258)
T ss_dssp             EEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred             EEEEECHHHHHHHHHHHHhhHhhceEEEECCC
Confidence            9999999999999998 899999999987653

>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*

Probab=98.73  E-value=9.4e-09  Score=109.19  Aligned_cols=111  Identities=10%  Similarity=-0.067  Sum_probs=79.6

Q ss_pred             CCCCEEEEecCCCCCcccCcCCH-HhHHHHcC-ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~-~~~~~a~~-G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      ...|.||++||.+... ...|.. .+..|.++ ||.|+++|+||.|...  +..... +. ....+|+.+.+++|.++..
T Consensus        68 ~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~--~~~~~~-~~-~~~~~dl~~li~~L~~~~g  142 (452)
T 1bu8_A           68 LDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTE--YTQASY-NT-RVVGAEIAFLVQVLSTEMG  142 (452)
T ss_dssp             TTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSC--HHHHHH-HH-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCc--hhHhHh-hH-HHHHHHHHHHHHHHHHhcC
Confidence            3458999999996443 123444 45666664 9999999999865543  211111 11 1235788888899876534


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.+++.|+|||+||++++.++ .+|++++.++...|..
T Consensus       143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~  181 (452)
T 1bu8_A          143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE  181 (452)
T ss_dssp             CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred             CCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence            6678999999999999999999 8899999999887653

>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A

Probab=98.19  E-value=1.3e-09  Score=108.72  Aligned_cols=108  Identities=17%  Similarity=0.126  Sum_probs=72.8

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|.||++||.+.  ....|...+..|+ +||.|+.+|+||.|.......   .........++..+.+..+++.  .+.+
T Consensus        25 ~p~vv~lHG~~~--~~~~~~~~~~~l~-~g~~v~~~D~~G~G~s~~~~~---~~~~~~~~~~~~~~~l~~~l~~--l~~~   96 (304)
T 3b12_A           25 GPALLLLHGFPQ--NLHMWARVAPLLA-NEYTVVCADLRGYGGSSKPVG---APDHANYSFRAMASDQRELMRT--LGFE   96 (304)
Confidence            367999999854  3345666777787 899999999999665433210   0001112233333333333322  2346


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      ++.++|||+||.+++.++ .+|++++++|...|....
T Consensus        97 ~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~  133 (304)
T 3b12_A           97 RFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTY  133 (304)
Confidence            899999999999999988 789999999999887553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.72  E-value=1.1e-06  Score=91.68  Aligned_cols=240  Identities=10%  Similarity=0.008  Sum_probs=131.8

Q ss_pred             ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcE
Q 006979           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL  167 (623)
Q Consensus        90 ~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l  167 (623)
                      .+..+.|+| +..++ +-..   +|...+|.  ..  ++....+..        |...+.+..++++ ..+++...++.|
T Consensus       110 ~v~~~~~s~~~~~l~-~~~~---dg~i~i~~--~~--~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIV-TGVE---NGELRLWN--KT--GALLNVLNF--------HRAPIVSVKWNKDGTHIISMDVENVT  173 (425)
T ss_dssp             CEEEEEECTTSSEEE-EEET---TSCEEEEE--TT--SCEEEEECC--------CCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             ceEEEEEcCCCCEEE-EEeC---CCeEEEEe--CC--CCeeeeccC--------CCccEEEEEECCCCCEEEEEecCCeE
Confidence            567888888 54444 3322   46766775  22  222222221        1112345556555 444555567889


Q ss_pred             EEEeCCCCCCCceecCCCCCC-----------CCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          168 YKHSIDSKDSSPLPITPDYGE-----------PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       168 ~~~d~~~g~~~~~~Lt~~~~~-----------~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      .++|+.++ .....+......           .........|+|++. ++....+         ..|+++|+.+++.  .
T Consensus       174 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------g~i~~~d~~~~~~--~  240 (425)
T 1r5m_A          174 ILWNVISG-TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK---------GAIFVYQITEKTP--T  240 (425)
T ss_dssp             EEEETTTT-EEEEEECCC---------------CCCBSCCEEEETTE-EEEECGG---------GCEEEEETTCSSC--S
T ss_pred             EEEECCCC-cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC---------CeEEEEEcCCCce--e
Confidence            99999866 222333322000           000156678999875 4333332         5689999988752  3


Q ss_pred             eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEE
Q 006979          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (623)
Q Consensus       237 ~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~  316 (623)
                      ..+...........|+|||++|+....+.        .|.++|+..+.   ....+.+..    ..+..+.|+||| +++
T Consensus       241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------~i~i~d~~~~~---~~~~~~~~~----~~i~~~~~~~~~-~l~  304 (425)
T 1r5m_A          241 GKLIGHHGPISVLEFNDTNKLLLSASDDG--------TLRIWHGGNGN---SQNCFYGHS----QSIVSASWVGDD-KVI  304 (425)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTS--------CEEEECSSSBS---CSEEECCCS----SCEEEEEEETTT-EEE
T ss_pred             eeeccCCCceEEEEECCCCCEEEEEcCCC--------EEEEEECCCCc---cceEecCCC----ccEEEEEECCCC-EEE
Confidence            33433344456678999999887765332        38888887653   233444443    456788999999 555


Q ss_pred             EEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979          317 VTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~  392 (623)
                      .... ++  .|..+|..+++...... ....+....|.            |+++.|+ +...+|.-++  +|+.+++
T Consensus       305 ~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s------------~~~~~l~-~~~~dg~i~i--~~~~~~~  363 (425)
T 1r5m_A          305 SCSM-DG--SVRLWSLKQNTLLALSIVDGVPIFAGRIS------------QDGQKYA-VAFMDGQVNV--YDLKKLN  363 (425)
T ss_dssp             EEET-TS--EEEEEETTTTEEEEEEECTTCCEEEEEEC------------TTSSEEE-EEETTSCEEE--EECHHHH
T ss_pred             EEeC-CC--cEEEEECCCCcEeEecccCCccEEEEEEc------------CCCCEEE-EEECCCeEEE--EECCCCc
Confidence            5544 34  56677877776444332 22223333333            2666554 4445665444  4554443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.72  E-value=6.1e-06  Score=91.52  Aligned_cols=201  Identities=8%  Similarity=-0.047  Sum_probs=115.8

Q ss_pred             cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcEE
Q 006979           91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY  168 (623)
Q Consensus        91 ~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l~  168 (623)
                      ...+.++| |+.+..-.     ++...||.....   +....+..        |...+.+.++++| .++.+...++.|.
T Consensus        21 ~~~~~~spdg~~l~~~~-----~~~v~l~~~~~~---~~~~~~~~--------h~~~v~~~~~spdg~~lasg~~d~~v~   84 (611)
T 1nr0_A           21 AVVLGNTPAGDKIQYCN-----GTSVYTVPVGSL---TDTEIYTE--------HSHQTTVAKTSPSGYYCASGDVHGNVR   84 (611)
T ss_dssp             CCCCEECTTSSEEEEEE-----TTEEEEEETTCS---SCCEEECC--------CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eeEEeeCCCCCEEEeCC-----CCEEEEecCCCc---ccCeEecC--------CCCceEEEEECCCCcEEEEEeCCCCEE
Confidence            34677888 66666533     244455554322   22222211        2222455667766 5666666788899


Q ss_pred             EEeCCCCCCCc-eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCccc
Q 006979          169 KHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA  247 (623)
Q Consensus       169 ~~d~~~g~~~~-~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~  247 (623)
                      ++|+.++.... ..+...    .....+.+|||||++|+.+.++...     ...++++|.  ++.  ...+....+.+.
T Consensus        85 lWd~~~~~~~~~~~~~~~----~~~v~~v~fs~dg~~l~~~~~~~~~-----~~~v~~wd~--~~~--~~~l~gh~~~v~  151 (611)
T 1nr0_A           85 IWDTTQTTHILKTTIPVF----SGPVKDISWDSESKRIAAVGEGRER-----FGHVFLFDT--GTS--NGNLTGQARAMN  151 (611)
T ss_dssp             EEESSSTTCCEEEEEECS----SSCEEEEEECTTSCEEEEEECCSSC-----SEEEEETTT--CCB--CBCCCCCSSCEE
T ss_pred             EeECCCCcceeeEeeccc----CCceEEEEECCCCCEEEEEECCCCc-----eeEEEEeeC--CCC--cceecCCCCCce
Confidence            99986541111 122221    2346788999999999887654321     146777764  321  334544445567


Q ss_pred             ceeeCCCCCE-EEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeee
Q 006979          248 FPRMDPRGER-MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN  326 (623)
Q Consensus       248 ~p~wSPDG~~-la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~  326 (623)
                      ..+|+||++. |+-...|.        .|.+.|....   .....+.+..    ..+....|+|||+++..... ++.  
T Consensus       152 ~v~f~p~~~~~l~s~s~D~--------~v~lwd~~~~---~~~~~l~~H~----~~V~~v~fspdg~~las~s~-D~~--  213 (611)
T 1nr0_A          152 SVDFKPSRPFRIISGSDDN--------TVAIFEGPPF---KFKSTFGEHT----KFVHSVRYNPDGSLFASTGG-DGT--  213 (611)
T ss_dssp             EEEECSSSSCEEEEEETTS--------CEEEEETTTB---EEEEEECCCS----SCEEEEEECTTSSEEEEEET-TSC--
T ss_pred             EEEECCCCCeEEEEEeCCC--------eEEEEECCCC---eEeeeecccc----CceEEEEECCCCCEEEEEEC-CCc--
Confidence            7889999985 55444332        2666676544   2334455554    56778899999995555544 454  


Q ss_pred             EEEEecCCCeEE
Q 006979          327 LHKWIESNNEVL  338 (623)
Q Consensus       327 L~~~d~~~~~~~  338 (623)
                      |..+|..+++..
T Consensus       214 i~lwd~~~g~~~  225 (611)
T 1nr0_A          214 IVLYNGVDGTKT  225 (611)
T ss_dssp             EEEEETTTCCEE
T ss_pred             EEEEECCCCcEe
Confidence            445566666543

>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A

Probab=98.72  E-value=1e-08  Score=108.54  Aligned_cols=111  Identities=14%  Similarity=-0.011  Sum_probs=79.4

Q ss_pred             CCCCEEEEecCCCCCcccCcCCH-HhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNL-SIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~-~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      ...|.||++||.+... ...|.. .+..|++ .||.|+.+|+||.+...  +..... +. ....+|+.+.+++|.++..
T Consensus        68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~--~~~~~~-~~-~~~~~dl~~~i~~l~~~~g  142 (432)
T 1gpl_A           68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQ--YSQASQ-NI-RVVGAEVAYLVQVLSTSLN  142 (432)
T ss_dssp             TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSC--HHHHHH-HH-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCcc--chhhHh-hH-HHHHHHHHHHHHHHHHhcC
Confidence            3458999999985433 123433 5666776 79999999999865433  211111 01 1234788889999976534


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.++|.++|||+||++++.++ .+|++++.++...|..
T Consensus       143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~  181 (432)
T 1gpl_A          143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE  181 (432)
T ss_dssp             CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred             CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence            6678999999999999999998 7888898888887654

>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E

Probab=98.72  E-value=3.3e-08  Score=100.18  Aligned_cols=104  Identities=12%  Similarity=0.050  Sum_probs=75.8

Q ss_pred             CCCCEEEEecCCCCCccc----CcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC
Q 006979          493 EKPPLLVKSHGGPTSEAR----GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS  568 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~----~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~  568 (623)
                      ++.|.||++||.......    ..|....+.|+++||.|+.+|++|.+.....          ....+++.+.++.++++
T Consensus         6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g~g~s~~~----------~~~~~~l~~~i~~~l~~   75 (320)
T 1ys1_X            6 ATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGP----------NGRGEQLLAYVKTVLAA   75 (320)
T ss_dssp             CCSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCSSCCSSST----------TSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCC----------CCCHHHHHHHHHHHHHH
Confidence            345679999998544321    4567788999999999999999986653211          12234444444444433


Q ss_pred             CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          569 GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       569 ~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                        .+.++|.++|||+||.+++.++ .+|+.++++|.+++..
T Consensus        76 --~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~  114 (320)
T 1ys1_X           76 --TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH  114 (320)
T ss_dssp             --HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred             --hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence              1347999999999999999998 7899999999998874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.70  E-value=2.5e-06  Score=87.31  Aligned_cols=198  Identities=11%  Similarity=0.041  Sum_probs=114.0

Q ss_pred             eEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCc---eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       149 ~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~---~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      ..+++++ .++.+...++.|.++++.++  ..   ..+..+   ........+|+|+|++|+....+         ..+.
T Consensus        21 ~l~~sp~g~~las~~~D~~i~iw~~~~~--~~~~~~~~~~~---h~~~v~~~~~sp~g~~l~s~s~D---------~~v~   86 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGGDRRIRIWGTEGD--SWICKSVLSEG---HQRTVRKVAWSPCGNYLASASFD---------ATTC   86 (345)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEEEETT--EEEEEEEECSS---CSSCEEEEEECTTSSEEEEEETT---------SCEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCCC--cceeeeeeccc---cCCcEEEEEECCCCCEEEEEECC---------CcEE
Confidence            3455555 45556667788888888754  21   122221   12346678899999988876654         3355


Q ss_pred             EEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  304 (623)
                      +.++.++..+....+......+...+|||||++|+-...|.        .|.+.|+..+........+.+..    ..+.
T Consensus        87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~--------~v~iwd~~~~~~~~~~~~~~~h~----~~v~  154 (345)
T 3fm0_A           87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK--------SVWVWEVDEEDEYECVSVLNSHT----QDVK  154 (345)
T ss_dssp             EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--------CEEEEEECTTSCEEEEEEECCCC----SCEE
T ss_pred             EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC--------eEEEEECCCCCCeEEEEEecCcC----CCeE
Confidence            66666554111233444444566788999999988776443        27888887664322233344444    4567


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEe---ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeE
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~---~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~  381 (623)
                      ...|+|||++++.... ++.-+||  |..+++...+.   .....+...         .|.   |+++.| ++...++.-
T Consensus       155 ~~~~~p~~~~l~s~s~-d~~i~~w--~~~~~~~~~~~~~~~h~~~v~~l---------~~s---p~g~~l-~s~s~D~~v  218 (345)
T 3fm0_A          155 HVVWHPSQELLASASY-DDTVKLY--REEEDDWVCCATLEGHESTVWSL---------AFD---PSGQRL-ASCSDDRTV  218 (345)
T ss_dssp             EEEECSSSSCEEEEET-TSCEEEE--EEETTEEEEEEEECCCSSCEEEE---------EEC---TTSSEE-EEEETTSCE
T ss_pred             EEEECCCCCEEEEEeC-CCcEEEE--EecCCCEEEEEEecCCCCceEEE---------EEC---CCCCEE-EEEeCCCeE
Confidence            8899999995544444 4655555  44455433222   222222222         332   266544 455578888


Q ss_pred             EEEEEeC
Q 006979          382 YLGILDD  388 (623)
Q Consensus       382 ~L~~~d~  388 (623)
                      +||....
T Consensus       219 ~iW~~~~  225 (345)
T 3fm0_A          219 RIWRQYL  225 (345)
T ss_dssp             EEEEEEC
T ss_pred             EEecccc
Confidence            8887644

>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A

Probab=98.70  E-value=5.7e-08  Score=96.38  Aligned_cols=123  Identities=13%  Similarity=0.063  Sum_probs=77.5

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc--C-cCC-HHhHHHHcCceEEEEECCCCCCCCchhHHHhh
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR--G-ILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERL  546 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~--~-~~~-~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~  546 (623)
                      +|.+++...+-+.        ....|.||++||.+.....  . .|. ..+..|++ +|.|+.+|+||.|......    
T Consensus        19 ~~~~l~y~~~G~~--------~~~~p~vvllHG~~~~~~~~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~s~~~~----   85 (286)
T 2qmq_A           19 PYGSVTFTVYGTP--------KPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEIIQ-NFVRVHVDAPGMEEGAPVF----   85 (286)
T ss_dssp             TTEEEEEEEESCC--------CTTCCEEEEECCTTCCHHHHHHHHHTSHHHHHHHT-TSCEEEEECTTTSTTCCCC----
T ss_pred             CCeEEEEEeccCC--------CCCCCeEEEeCCCCCCchhhhhhhhhhchhHHHhc-CCCEEEecCCCCCCCCCCC----
Confidence            5777776555432        1234889999998544321  0 122 15666766 6999999999965322110    


Q ss_pred             ccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          547 LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       547 ~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .........+++.+.+..++++  .+.+++.++|||+||.+++.++ .+|++++++|...|..
T Consensus        86 ~~~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~  146 (286)
T 2qmq_A           86 PLGYQYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDP  146 (286)
T ss_dssp             CTTCCCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred             CCCCCccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCC
Confidence            0111111344444433333322  1235899999999999999998 8899999999998865

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.69  E-value=4.4e-06  Score=85.76  Aligned_cols=230  Identities=13%  Similarity=0.032  Sum_probs=140.3

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++|+.  ...|+++++++.  ..+.+...    ..+...+.|++.++.|+++....        ..|++++++++.   
T Consensus        46 ~ll~~~--~~~I~~i~~~g~--~~~~~~~~----~~~~~~l~~d~~~~~ly~~D~~~--------~~I~r~~~~g~~---  106 (349)
T 3v64_C           46 VLLFAN--RIDIRQVLPHRS--EYTLLLNN----LENAIALDFHHRRELVFWSDVTL--------DRILRANLNGSN---  106 (349)
T ss_dssp             EEEEEC--BSCEEEECTTSC--CEEEEECS----CSCEEEEEEETTTTEEEEEETTT--------TEEEEEETTSCS---
T ss_pred             eeEeec--ccceEEEeCCCC--eeEEeecC----CCceEEEEEeccccEEEEEeccC--------CceEEEecCCCC---
Confidence            466763  345999999865  44554433    23345678999888888865432        679999999876   


Q ss_pred             ceec-ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcE
Q 006979          236 PKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL  314 (623)
Q Consensus       236 ~~~l-~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l  314 (623)
                      .+.+ ..+.....+.++.++++.|+|....       ...|+++++++..   ...++...-    ..+...+.+|++..
T Consensus       107 ~~~~~~~~~~~p~glavd~~~g~ly~~d~~-------~~~I~~~~~dG~~---~~~l~~~~l----~~P~~iavdp~~g~  172 (349)
T 3v64_C          107 VEEVVSTGLESPGGLAVDWVHDKLYWTDSG-------TSRIEVANLDGAH---RKVLLWQSL----EKPRAIALHPMEGT  172 (349)
T ss_dssp             CEEEECSSCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETTSCS---CEEEECTTC----SCEEEEEEETTTTE
T ss_pred             ceEEEeCCCCCccEEEEecCCCeEEEEcCC-------CCeEEEEcCCCCc---eEEEEeCCC----CCcceEEEecCcCe
Confidence            4444 3333444567788888899998633       3469999988652   233333222    34557788886664


Q ss_pred             EEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979          315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (623)
Q Consensus       315 ~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~  394 (623)
                      +|.++. .....|+++++++...+.+....  +..|      +.+.+.   ++++.|||+.  .+..+|+++|++++..+
T Consensus       173 ly~td~-~~~~~I~r~~~dG~~~~~~~~~~--~~~P------nGla~d---~~~~~lY~aD--~~~~~I~~~~~dG~~~~  238 (349)
T 3v64_C          173 IYWTDW-GNTPRIEASSMDGSGRRIIADTH--LFWP------NGLTID---YAGRRMYWVD--AKHHVIERANLDGSHRK  238 (349)
T ss_dssp             EEEEEC-SSSCEEEEEETTSCSCEESCCSS--CSCE------EEEEEE---TTTTEEEEEE--TTTTEEEEEETTSCSCE
T ss_pred             EEEecc-CCCCEEEEEeCCCCCcEEEEECC--CCCc------ceEEEe---CCCCEEEEEE--CCCCEEEEEeCCCCceE
Confidence            455565 23378999998876555554321  1111      233443   2678899886  34568999999876655


Q ss_pred             ecc-cCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          395 LLD-IPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       395 ~lt-~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      .+. .+...-.++..+++.+|++-.   ....|++++..+|+
T Consensus       239 ~~~~~~~~~P~giav~~~~ly~td~---~~~~V~~~~~~~G~  277 (349)
T 3v64_C          239 AVISQGLPHPFAITVFEDSLYWTDW---HTKSINSANKFTGK  277 (349)
T ss_dssp             EEECSSCSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             EEEeCCCCCceEEEEECCEEEEecC---CCCeEEEEEccCCC
Confidence            433 222222344445677776643   22467777744443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.69  E-value=8.4e-06  Score=84.26  Aligned_cols=205  Identities=9%  Similarity=0.015  Sum_probs=122.6

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC-C-EEEEEeCCCC
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-D-TVIFSNYKDQ  165 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~-d-~l~f~~~~~~  165 (623)
                      ..+..+.|+| +..++..-..   +|...+|.....   +....+...      -|...+.+..+++ + ..+++...++
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~---~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSK---GGDIILWDYDVQ---NKTSFIQGM------GPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEB---TSCEEEEETTST---TCEEEECCC------STTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             CCEEEEEECCCCCCEEEEEcC---CCeEEEEeCCCc---ccceeeecC------CcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            4456788888 5355555433   477777766433   222222110      0122245666776 3 6677777788


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~  245 (623)
                      .|.++|+.+.  ..+.+.... ..........|+|+++.|+....+         ..|+++|+.+..   ...+......
T Consensus       142 ~i~iwd~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~---~~~~~~h~~~  206 (383)
T 3ei3_B          142 ATTLRDFSGS--VIQVFAKTD-SWDYWYCCVDVSVSRQMLATGDST---------GRLLLLGLDGHE---IFKEKLHKAK  206 (383)
T ss_dssp             EEEEEETTSC--EEEEEECCC-CSSCCEEEEEEETTTTEEEEEETT---------SEEEEEETTSCE---EEEEECSSSC
T ss_pred             EEEEEECCCC--ceEEEeccC-CCCCCeEEEEECCCCCEEEEECCC---------CCEEEEECCCCE---EEEeccCCCc
Confidence            8999999854  444444321 112345678899999988776543         568999996544   4555544455


Q ss_pred             ccceeeCCCCC-EEEEEEecCCCCCCCceEEEEEEecCCCce-eeeEEEcCCCCCccccCcCceeCC-CCcEEEEEeCCC
Q 006979          246 YAFPRMDPRGE-RMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKN  322 (623)
Q Consensus       246 ~~~p~wSPDG~-~la~~~~~~~~~p~~~~~L~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ws~-DG~l~~~~~~~~  322 (623)
                      +....|+|||+ .|+... .       ...|.++|+...... .....+ +..    ..+..+.|+| ||++++.... +
T Consensus       207 v~~~~~~~~~~~~l~s~~-~-------d~~i~iwd~~~~~~~~~~~~~~-~~~----~~v~~~~~s~~~~~~l~~~~~-d  272 (383)
T 3ei3_B          207 VTHAEFNPRCDWLMATSS-V-------DATVKLWDLRNIKDKNSYIAEM-PHE----KPVNAAYFNPTDSTKLLTTDQ-R  272 (383)
T ss_dssp             EEEEEECSSCTTEEEEEE-T-------TSEEEEEEGGGCCSTTCEEEEE-ECS----SCEEEEEECTTTSCEEEEEES-S
T ss_pred             EEEEEECCCCCCEEEEEe-C-------CCEEEEEeCCCCCcccceEEEe-cCC----CceEEEEEcCCCCCEEEEEcC-C
Confidence            66788999999 454443 2       234888898863210 112222 333    4677899999 9985555444 3


Q ss_pred             CeeeEEEEecCCCe
Q 006979          323 GFWNLHKWIESNNE  336 (623)
Q Consensus       323 g~~~L~~~d~~~~~  336 (623)
                      +  .|..+|..+++
T Consensus       273 ~--~i~iwd~~~~~  284 (383)
T 3ei3_B          273 N--EIRVYSSYDWS  284 (383)
T ss_dssp             S--EEEEEETTBTT
T ss_pred             C--cEEEEECCCCc
Confidence            4  45566666554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.69  E-value=9.4e-07  Score=90.81  Aligned_cols=202  Identities=10%  Similarity=0.106  Sum_probs=125.7

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEe--CCEEEEEeCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKD  164 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s--~d~l~f~~~~~  164 (623)
                      ...+.++.|++ ++.|||.+...   +  .|++.+.+++ ..+.+...+..      .  ...++++  .+.|||.+...
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~---~--~I~r~~~~g~-~~~~~~~~~~~------~--p~glavd~~~g~ly~~d~~~  137 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTL---D--RILRANLNGS-NVEEVVSTGLE------S--PGGLAVDWVHDKLYWTDSGT  137 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTT---T--EEEEEETTSC-SCEEEECSSCS------C--CCEEEEETTTTEEEEEETTT
T ss_pred             CCceEEEEEeccccEEEEEeccC---C--ceEEEecCCC-CceEEEeCCCC------C--ccEEEEecCCCeEEEEcCCC
Confidence            34567888998 99999998552   3  4777776522 33333322210      0  1234444  55899998888


Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc-CC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GS  243 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~-~~  243 (623)
                      ++|+++++++.  ..+.+...   ....-.+.+++|++..|+++....       ...|+++++++..   .+.+.. +.
T Consensus       138 ~~I~~~~~dG~--~~~~l~~~---~l~~P~~iavdp~~g~ly~td~~~-------~~~I~r~~~dG~~---~~~~~~~~~  202 (349)
T 3v64_C          138 SRIEVANLDGA--HRKVLLWQ---SLEKPRAIALHPMEGTIYWTDWGN-------TPRIEASSMDGSG---RRIIADTHL  202 (349)
T ss_dssp             TEEEEEETTSC--SCEEEECT---TCSCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCS---CEESCCSSC
T ss_pred             CeEEEEcCCCC--ceEEEEeC---CCCCcceEEEecCcCeEEEeccCC-------CCEEEEEeCCCCC---cEEEEECCC
Confidence            88999999865  44444332   023345678999888888765422       1679999999865   455543 33


Q ss_pred             CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCC
Q 006979          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG  323 (623)
Q Consensus       244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g  323 (623)
                      ....+.+|+|++++|+|+.+.       ...|+++++++..   .+.++....    ..+..+.. .++.+| .++.  +
T Consensus       203 ~~PnGla~d~~~~~lY~aD~~-------~~~I~~~~~dG~~---~~~~~~~~~----~~P~giav-~~~~ly-~td~--~  264 (349)
T 3v64_C          203 FWPNGLTIDYAGRRMYWVDAK-------HHVIERANLDGSH---RKAVISQGL----PHPFAITV-FEDSLY-WTDW--H  264 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCS---CEEEECSSC----SSEEEEEE-ETTEEE-EEET--T
T ss_pred             CCcceEEEeCCCCEEEEEECC-------CCEEEEEeCCCCc---eEEEEeCCC----CCceEEEE-ECCEEE-EecC--C
Confidence            445677899999999998643       3469999988652   233333222    23344555 334344 4565  4


Q ss_pred             eeeEEEEecCCCe
Q 006979          324 FWNLHKWIESNNE  336 (623)
Q Consensus       324 ~~~L~~~d~~~~~  336 (623)
                      ...|.+++..+|+
T Consensus       265 ~~~V~~~~~~~G~  277 (349)
T 3v64_C          265 TKSINSANKFTGK  277 (349)
T ss_dssp             TTEEEEEETTTCC
T ss_pred             CCeEEEEEccCCC
Confidence            5578888854554

>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}

Probab=98.68  E-value=1.3e-07  Score=94.64  Aligned_cols=102  Identities=13%  Similarity=0.054  Sum_probs=66.6

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHH-hCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV-GSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~-~~~~~d~~  574 (623)
                      |.||++||.+...  ..|......++ .+|.|+++|+||.|.+.+.-   ....+.....+++.+.+..++ ..+   .+
T Consensus        26 ~~~vllHG~~~~~--~~w~~~~~~l~-~~~~vi~~Dl~G~G~s~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~---~~   96 (291)
T 3qyj_A           26 APLLLLHGYPQTH--VMWHKIAPLLA-NNFTVVATDLRGYGDSSRPA---SVPHHINYSKRVMAQDQVEVMSKLG---YE   96 (291)
T ss_dssp             SEEEEECCTTCCG--GGGTTTHHHHT-TTSEEEEECCTTSTTSCCCC---CCGGGGGGSHHHHHHHHHHHHHHTT---CS
T ss_pred             CeEEEECCCCCCH--HHHHHHHHHHh-CCCEEEEEcCCCCCCCCCCC---CCccccccCHHHHHHHHHHHHHHcC---CC
Confidence            5688899996543  35555666664 58999999999966543210   000011122333333222222 222   35


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                      ++.++||||||.+++.++ .+|+++++.|...+
T Consensus        97 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~  129 (291)
T 3qyj_A           97 QFYVVGHDRGARVAHRLALDHPHRVKKLALLDI  129 (291)
T ss_dssp             SEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred             CEEEEEEChHHHHHHHHHHhCchhccEEEEECC
Confidence            899999999999999998 89999999998754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.68  E-value=8e-06  Score=82.57  Aligned_cols=230  Identities=10%  Similarity=0.025  Sum_probs=135.9

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC----C
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----Q  231 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~----g  231 (623)
                      .|+|+.  ...|.++|++++  ....+...    ..+...+.|+++++.|+++....        ..|+++++++    .
T Consensus         3 ~ll~~~--~~~I~~i~~~~~--~~~~~~~~----~~~p~g~~~d~~~~~ly~~D~~~--------~~I~~~~~~g~~~~~   66 (316)
T 1ijq_A            3 YLFFTN--RHEVRKMTLDRS--EYTSLIPN----LRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVS   66 (316)
T ss_dssp             EEEEEC--BSSEEEEETTSC--CCEEEECS----CSSEEEEEEETTTTEEEEEETTT--------TEEEEEEC-------
T ss_pred             EEEEEC--CCeEEEEECCCc--ceEehhcC----CCceEEEEEEeCCCEEEEEECCC--------CcEEEEECCCCCCCc
Confidence            366764  345999999876  44444332    22345678999888888875432        6799999987    2


Q ss_pred             Ccccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979          232 NIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (623)
Q Consensus       232 ~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~  310 (623)
                      .   .+.+. .+.....+.+++++++.|+|....       ...|.++++++..   ...++....    ..+...+.+|
T Consensus        67 ~---~~~~~~~~~~~p~glavd~~~~~ly~~d~~-------~~~I~~~~~~g~~---~~~~~~~~~----~~P~~iavdp  129 (316)
T 1ijq_A           67 S---YDTVISRDIQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVK---RKTLFRENG----SKPRAIVVDP  129 (316)
T ss_dssp             ----CEEEECSSCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETTSSS---EEEEEECTT----CCEEEEEEET
T ss_pred             c---cEEEEeCCCCCcCEEEEeecCCeEEEEECC-------CCEEEEEeCCCCc---eEEEEECCC----CCcceEEeCC
Confidence            2   23332 232334556788888889988632       3468899987652   233333222    3445677888


Q ss_pred             CCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC
Q 006979          311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (623)
Q Consensus       311 DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~  390 (623)
                      ++..+|.++. .....|+++++++...+.+...  .+..|      +.+.+.   ++++.|||+.  .+..+|+++|.++
T Consensus       130 ~~g~ly~~d~-~~~~~I~~~~~dG~~~~~~~~~--~~~~P------~gla~d---~~~~~lY~~D--~~~~~I~~~d~dg  195 (316)
T 1ijq_A          130 VHGFMYWTDW-GTPAKIKKGGLNGVDIYSLVTE--NIQWP------NGITLD---LLSGRLYWVD--SKLHSISSIDVNG  195 (316)
T ss_dssp             TTTEEEEEEC-SSSCEEEEEETTSCCEEEEECS--SCSCE------EEEEEE---TTTTEEEEEE--TTTTEEEEEETTS
T ss_pred             CCCEEEEEcc-CCCCeEEEEcCCCCCeEEEEEC--CCCCc------eEEEEe---ccCCEEEEEE--CCCCeEEEEecCC
Confidence            6664444555 2236899999877655555432  11111      233333   2678899876  3456799999987


Q ss_pred             CceeecccC---CcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          391 HSLSLLDIP---FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       391 ~~~~~lt~~---~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      +..+.+...   ...-.++..+++.+|++..   ....|++++..+++
T Consensus       196 ~~~~~~~~~~~~~~~P~giav~~~~ly~~d~---~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          196 GNRKTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS  240 (316)
T ss_dssp             CSCEEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             CceEEEeecCCccCCcEEEEEECCEEEEEEC---CCCeEEEEeCCCCc
Confidence            766655321   1122344445677777552   23578888876554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.68  E-value=1.2e-06  Score=92.70  Aligned_cols=206  Identities=10%  Similarity=0.023  Sum_probs=118.5

Q ss_pred             ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC--CEEEEEeCCCCc
Q 006979           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG--DTVIFSNYKDQR  166 (623)
Q Consensus        90 ~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~--d~l~f~~~~~~~  166 (623)
                      .+..+.|+| ++.+.-.-.   .+|...||.....  .....+...+       |...+.+..+++  +.++++...|+.
T Consensus       121 ~V~~l~~~P~~~~~lasGs---~dg~i~lWd~~~~--~~~~~~~~~g-------H~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGS---KGGDIMLWNFGIK--DKPTFIKGIG-------AGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEE---TTSCEEEECSSCC--SCCEEECCCS-------SSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             CEEEEEEeCCCCCEEEEEe---CCCEEEEEECCCC--CceeEEEccC-------CCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            355678888 555544432   2577777755433  1122111111       222355666663  357778778888


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcc
Q 006979          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY  246 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~  246 (623)
                      |.++|+.++  ..+.+.... ..........|+|+|+.|+....+         ..|.++|+.+..   +..+......+
T Consensus       189 v~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d---------g~i~~wd~~~~~---~~~~~~h~~~v  253 (435)
T 4e54_B          189 TRLQDFKGN--ILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV---------GNVILLNMDGKE---LWNLRMHKKKV  253 (435)
T ss_dssp             EEEEETTSC--EEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS---------SBEEEEESSSCB---CCCSBCCSSCE
T ss_pred             EEEeeccCC--ceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC---------CcEeeeccCcce---eEEEecccceE
Confidence            999999765  344433321 112234567899999988765433         458888988765   44454444556


Q ss_pred             cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeee
Q 006979          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN  326 (623)
Q Consensus       247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~  326 (623)
                      ....|+|+++.++.....+       ..|.++|+.............+..    ..+....|+|||++++.... ++.  
T Consensus       254 ~~v~~~p~~~~~~~s~s~d-------~~v~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~spdg~~l~s~~~-D~~--  319 (435)
T 4e54_B          254 THVALNPCCDWFLATASVD-------QTVKIWDLRQVRGKASFLYSLPHR----HPVNAACFSPDGARLLTTDQ-KSE--  319 (435)
T ss_dssp             EEEEECTTCSSEEEEEETT-------SBCCEEETTTCCSSSCCSBCCBCS----SCEEECCBCTTSSEEEEEES-SSC--
T ss_pred             EeeeecCCCceEEEEecCc-------ceeeEEecccccccceEEEeeecc----ccccceeECCCCCeeEEEcC-CCE--
Confidence            6788999998766555332       226677876653211111112222    35667889999995555444 454  


Q ss_pred             EEEEecCCCe
Q 006979          327 LHKWIESNNE  336 (623)
Q Consensus       327 L~~~d~~~~~  336 (623)
                      |..+|..+++
T Consensus       320 i~iwd~~~~~  329 (435)
T 4e54_B          320 IRVYSASQWD  329 (435)
T ss_dssp             EEEEESSSSS
T ss_pred             EEEEECCCCc
Confidence            4455665554

>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus}

Probab=98.68  E-value=1.8e-08  Score=107.02  Aligned_cols=111  Identities=10%  Similarity=-0.010  Sum_probs=78.6

Q ss_pred             CCCCEEEEecCCCCCcccCcCCH-HhHHHHcC-ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~-~~~~~a~~-G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      ...|+||++||.+... ...|.. .+..|.++ ||.|+++|+||.+...  +..... +. ....+|+.+.+++|.++..
T Consensus        68 ~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~--~~~~~~-~~-~~~~~dl~~~i~~L~~~~g  142 (452)
T 1w52_X           68 SSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAE--YTQAVQ-NI-RIVGAETAYLIQQLLTELS  142 (452)
T ss_dssp             TTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSC--HHHHHH-HH-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccccccc--cHHHHH-hH-HHHHHHHHHHHHHHHHhcC
Confidence            3458999999985433 123443 55667665 9999999999865543  211111 11 1235678888888875433


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.++|.|+|||+||++++.++ .+|++++.+|...|..
T Consensus       143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~  181 (452)
T 1w52_X          143 YNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE  181 (452)
T ss_dssp             CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred             CCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence            5678999999999999999999 7899999999887653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.67  E-value=1.3e-06  Score=92.82  Aligned_cols=252  Identities=10%  Similarity=-0.028  Sum_probs=138.7

Q ss_pred             ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcE
Q 006979           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL  167 (623)
Q Consensus        90 ~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l  167 (623)
                      .+..+.|+| +..++.+...   +|...+|.....++ +....+..      ..+...+.++.++++ ..+++...++.+
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~---dg~v~iwd~~~~~~-~~~~~~~~------~~~~~~v~~~~~sp~~~~l~~~~~~g~v  173 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADS---DKSLLVFDVDKTSK-NVLKLRKR------FCFSKRPNAISIAEDDTTVIIADKFGDV  173 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGG---GTEEEEEEECSSSS-SCEEEEEE------EECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ceEEEEEcCCCCEEEEEECC---CCeEEEEECcCCCC-ceeeeeec------ccCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence            467889999 6655555533   47777887753222 23222210      001112345666665 445555568889


Q ss_pred             EEEeCCCCCCCce-----ecCCCCCCCCeeecceeeCCC---CCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccee-
Q 006979          168 YKHSIDSKDSSPL-----PITPDYGEPLVSYADGIFDPR---FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-  238 (623)
Q Consensus       168 ~~~d~~~g~~~~~-----~Lt~~~~~~~~~~~d~~~sPd---G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~-  238 (623)
                      +.+++.++  ...     .+...    ........|+|+   +++|+....+         ..|+++|+.++..  +.. 
T Consensus       174 ~~~~~~~~--~~~~~~~~~~~~h----~~~v~~~~~sp~~~~~~~l~s~~~d---------~~i~vwd~~~~~~--~~~~  236 (450)
T 2vdu_B          174 YSIDINSI--PEEKFTQEPILGH----VSMLTDVHLIKDSDGHQFIITSDRD---------EHIKISHYPQCFI--VDKW  236 (450)
T ss_dssp             EEEETTSC--CCSSCCCCCSEEC----SSCEEEEEEEECTTSCEEEEEEETT---------SCEEEEEESCTTC--EEEE
T ss_pred             EEEecCCc--ccccccceeeecc----cCceEEEEEcCCCCCCcEEEEEcCC---------CcEEEEECCCCce--eeee
Confidence            99999765  222     22211    234567889999   8777665543         4588889887762  233 


Q ss_pred             cccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCC---------------------CC
Q 006979          239 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF---------------------DP  297 (623)
Q Consensus       239 l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~---------------------~~  297 (623)
                      +......+....|| ||++|+....+        ..|.++|+.++..   ...+...                     ..
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d--------~~v~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGD--------DKIFAWDWKTGKN---LSTFDYNSLIKPYLNDQHLAPPRFQNENND  304 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESS--------SEEEEEETTTCCE---EEEEECHHHHGGGCCTTSBC----------
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCC--------CeEEEEECCCCcE---eeeecchhhhhhhhhhcccccccccccccc
Confidence            32334556778999 99998876633        3588889887642   1111100                     00


Q ss_pred             CccccCcCceeCCCCcEEEEEeCCCCeeeEEEE-ecCCCeEEEEe--ecccccccccccccCcceeEEeecCCCCEEEEE
Q 006979          298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKW-IESNNEVLAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS  374 (623)
Q Consensus       298 ~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~-d~~~~~~~~l~--~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~  374 (623)
                      .....+..+.|+|||+++++.....+.-.||.+ +..+++.+.+.  .....+.         .+.+.    . +.++++
T Consensus       305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~---------~~~~~----~-~~~~v~  370 (450)
T 2vdu_B          305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVI---------SLSAH----N-DEFQVT  370 (450)
T ss_dssp             CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEE---------EEEEE----T-TEEEEE
T ss_pred             cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceE---------EEEec----C-CcEEEE
Confidence            111345678999999955554421465556655 22333333332  2212222         23343    3 344444


Q ss_pred             EEE-C------CeEEEEEEeCCCCcee
Q 006979          375 YRQ-N------GRSYLGILDDFGHSLS  394 (623)
Q Consensus       375 ~~~-~------g~~~L~~~d~~~~~~~  394 (623)
                      ... +      ..-.||.++.++++++
T Consensus       371 ~~~~~~~~~~~~~i~v~~~~~~~~~~~  397 (450)
T 2vdu_B          371 LDNKESSGVQKNFAKFIEYNLNENSFV  397 (450)
T ss_dssp             ECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred             EecccCCCCCCcceEEEEEEcCCCeEE
Confidence            432 1      1248888888777664

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.67  E-value=1e-05  Score=82.66  Aligned_cols=198  Identities=10%  Similarity=-0.040  Sum_probs=114.7

Q ss_pred             ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC--cccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP--SDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        90 ~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~--~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      .+..+.|+| +..+.- -.   .++...||.....   ..  ...+..+       |...+.+.+++++ ..+++...++
T Consensus        18 ~v~~l~~sp~g~~las-~~---~D~~i~iw~~~~~---~~~~~~~~~~~-------h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLAS-CG---GDRRIRIWGTEGD---SWICKSVLSEG-------HQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEECTTSSCEEE-EE---TTSCEEEEEEETT---EEEEEEEECSS-------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEEEECCCCCEEEE-Ec---CCCeEEEEEcCCC---cceeeeeeccc-------cCCcEEEEEECCCCCEEEEEECCC
Confidence            345678888 554443 22   2477777765422   11  1111111       2222445666665 5566666778


Q ss_pred             cEEEEeCCCCCCCc---eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-ccceeccc
Q 006979          166 RLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QEPKVLVS  241 (623)
Q Consensus       166 ~l~~~d~~~g~~~~---~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-~~~~~l~~  241 (623)
                      .+.++++..+  ..   ..+...    ........|+|+|++|+....+         ..|.+.|+.++.. .....+..
T Consensus        84 ~v~iw~~~~~--~~~~~~~~~~h----~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~  148 (345)
T 3fm0_A           84 TTCIWKKNQD--DFECVTTLEGH----ENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEEDEYECVSVLNS  148 (345)
T ss_dssp             CEEEEEECCC---EEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTTSCEEEEEEECC
T ss_pred             cEEEEEccCC--CeEEEEEccCC----CCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCCCCeEEEEEecC
Confidence            8888887654  22   223322    3346778999999988876654         3477778776531 00122333


Q ss_pred             CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCC
Q 006979          242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK  321 (623)
Q Consensus       242 ~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~  321 (623)
                      ....+....|+|||+.|+....|.        .|.+++...+.. .....+.+..    ..+....|+|||++++.... 
T Consensus       149 h~~~v~~~~~~p~~~~l~s~s~d~--------~i~~w~~~~~~~-~~~~~~~~h~----~~v~~l~~sp~g~~l~s~s~-  214 (345)
T 3fm0_A          149 HTQDVKHVVWHPSQELLASASYDD--------TVKLYREEEDDW-VCCATLEGHE----STVWSLAFDPSGQRLASCSD-  214 (345)
T ss_dssp             CCSCEEEEEECSSSSCEEEEETTS--------CEEEEEEETTEE-EEEEEECCCS----SCEEEEEECTTSSEEEEEET-
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCC--------cEEEEEecCCCE-EEEEEecCCC----CceEEEEECCCCCEEEEEeC-
Confidence            334456678999999888776443        267777766521 1122344444    46778899999995555544 


Q ss_pred             CCeeeEEEE
Q 006979          322 NGFWNLHKW  330 (623)
Q Consensus       322 ~g~~~L~~~  330 (623)
                      ++.-+||..
T Consensus       215 D~~v~iW~~  223 (345)
T 3fm0_A          215 DRTVRIWRQ  223 (345)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEecc
Confidence            577777754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.67  E-value=9.4e-07  Score=92.27  Aligned_cols=295  Identities=12%  Similarity=0.006  Sum_probs=152.5

Q ss_pred             ccCceEEcC-CCcEEEEeec-C------CCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEE
Q 006979           90 RLGGTAVDG-HGRLIWLESR-P------TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFS  160 (623)
Q Consensus        90 ~~~~~~~~~-~~~~~~l~~~-~------~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~  160 (623)
                      .+..+.|+| +..++..-.. +      .+++...+|.....  ...+.+....       +...+.+..++++ .++++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~--~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~   84 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA--DSEKPIASLQ-------VDSKFNDLDWSHNNKIIAG   84 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSG--GGCSCSCCCC-------CSSCEEEEEECSSSSCEEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCC--CCCcEEEEEe-------cCCceEEEEECCCCCeEEE
Confidence            355678888 5545555422 1      34577777766533  1111111000       1122445666655 44555


Q ss_pred             eCCCCcEEEEeCCC---CCCCceecCCCCCCCCeeecceeeCCC-CCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc--
Q 006979          161 NYKDQRLYKHSIDS---KDSSPLPITPDYGEPLVSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ--  234 (623)
Q Consensus       161 ~~~~~~l~~~d~~~---g~~~~~~Lt~~~~~~~~~~~d~~~sPd-G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~--  234 (623)
                      ...++.|.++++.+   +......+...    ........|+|+ ++.|+....+         ..|.++|+.+++..  
T Consensus        85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~  151 (416)
T 2pm9_A           85 ALDNGSLELYSTNEANNAINSMARFSNH----SSSVKTVKFNAKQDNVLASGGNN---------GEIFIWDMNKCTESPS  151 (416)
T ss_dssp             EESSSCEEEECCSSTTSCCCEEEECCCS----SSCCCEEEECSSSTTBEEEECSS---------SCEEBCBTTTTSSCTT
T ss_pred             EccCCeEEEeecccccccccchhhccCC----ccceEEEEEcCCCCCEEEEEcCC---------CeEEEEECCCCccccc
Confidence            55678899999876   20122333322    334667889998 6665554332         45888898876400  


Q ss_pred             --cceec---ccCCCcccceeeCCC-CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC--CccccCcCc
Q 006979          235 --EPKVL---VSGSDFYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP--TIVESPTEP  306 (623)
Q Consensus       235 --~~~~l---~~~~~~~~~p~wSPD-G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~  306 (623)
                        ....+   ...........|+|| ++.|+... .       ...|.++|+..+.   ....+.....  .....+..+
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~-------dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~v~~~  220 (416)
T 2pm9_A          152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG-S-------SNFASIWDLKAKK---EVIHLSYTSPNSGIKQQLSVV  220 (416)
T ss_dssp             TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES-S-------SSCEEEEETTTTE---EEEEECCCCCSSCCCCCEEEE
T ss_pred             cccccccccccCCCCCeeEEEeCCCCCcEEEEEc-C-------CCCEEEEECCCCC---cceEEeccccccccCCceEEE
Confidence              01112   222344566889999 45554333 2       2238888988762   2233332210  000456788


Q ss_pred             eeCCCCc-EEEEEeCCCC-eeeEEEEecCCCe-E-EEEe-ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeE
Q 006979          307 KWSSKGE-LFFVTDRKNG-FWNLHKWIESNNE-V-LAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (623)
Q Consensus       307 ~ws~DG~-l~~~~~~~~g-~~~L~~~d~~~~~-~-~~l~-~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~  381 (623)
                      .|+|+|. +++.... ++ ...|..+|..+++ . +.+. .....+....|.            |+++.++++...+|. 
T Consensus       221 ~~~~~~~~~l~~~~~-d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s------------~~~~~~l~s~~~dg~-  286 (416)
T 2pm9_A          221 EWHPKNSTRVATATG-SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC------------HQDEHLLLSSGRDNT-  286 (416)
T ss_dssp             EECSSCTTEEEEEEC-CSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEEC------------SSCSSCEEEEESSSE-
T ss_pred             EECCCCCCEEEEEEC-CCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeC------------CCCCCeEEEEeCCCC-
Confidence            9999986 6665554 33 2256666776642 1 2221 122222222232            234455556656665 


Q ss_pred             EEEEEeCCCCce-eecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          382 YLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       382 ~L~~~d~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                       |.++|+.+++. ..+......+..+  ++++..++++++.   ...|..+++..++
T Consensus       287 -v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~~~  339 (416)
T 2pm9_A          287 -VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF---DNKIEVQTLQNLT  339 (416)
T ss_dssp             -EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS---SSEEEEEESCCCC
T ss_pred             -EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec---CCcEEEEEccCCC
Confidence             44557666554 3444433344444  5666445555443   2457777777654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.67  E-value=2.5e-06  Score=88.99  Aligned_cols=189  Identities=12%  Similarity=0.152  Sum_probs=118.1

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      .+.|||++...++|++++++++  ..+.+....   .......++++.++.|+++....        ..|+++++++.. 
T Consensus       127 ~~~ly~~D~~~~~I~r~~~~g~--~~~~~~~~~---~~~p~glavd~~~g~lY~~d~~~--------~~I~~~~~dg~~-  192 (386)
T 3v65_B          127 RELVFWSDVTLDRILRANLNGS--NVEEVVSTG---LESPGGLAVDWVHDKLYWTDSGT--------SRIEVANLDGAH-  192 (386)
T ss_dssp             TTEEEEEETTTTEEEEEETTSC--CEEEEECSS---CSCCCCEEEETTTTEEEEEETTT--------TEEEECBTTSCS-
T ss_pred             CCeEEEEeCCCCcEEEEecCCC--CcEEEEeCC---CCCccEEEEEeCCCeEEEEcCCC--------CeEEEEeCCCCc-
Confidence            4589999888889999999875  444432210   12234577888888887764422        579999998765 


Q ss_pred             ccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          234 QEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       234 ~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                        .+.+.. +.......++.|++.+|+|..+..      ...|+++++++..   ...+....-    ..+..++|++++
T Consensus       193 --~~~l~~~~l~~P~giavdp~~g~ly~td~~~------~~~I~r~~~dG~~---~~~~~~~~~----~~PnGlavd~~~  257 (386)
T 3v65_B          193 --RKVLLWQSLEKPRAIALHPMEGTIYWTDWGN------TPRIEASSMDGSG---RRIIADTHL----FWPNGLTIDYAG  257 (386)
T ss_dssp             --CEEEECSSCSCEEEEEEETTTTEEEEEECSS------SCEEEEEETTSCS---CEEEECSSC----SCEEEEEEEGGG
T ss_pred             --eEEeecCCCCCCcEEEEEcCCCeEEEeccCC------CCEEEEEeCCCCC---cEEEEECCC----CCeeeEEEeCCC
Confidence              444433 333445567999999999987543      2569999988752   223332222    345678999877


Q ss_pred             cEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       313 ~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      +.+|+++.  +...|+++|+++...+.+....  ...|      ..+.+     +++.+||+..  +...|.+++.
T Consensus       258 ~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~--~~~P------~giav-----~~~~ly~td~--~~~~V~~~~~  316 (386)
T 3v65_B          258 RRMYWVDA--KHHVIERANLDGSHRKAVISQG--LPHP------FAITV-----FEDSLYWTDW--HTKSINSANK  316 (386)
T ss_dssp             TEEEEEET--TTTEEEEECTTSCSCEEEECSS--CSSE------EEEEE-----ETTEEEEEET--TTTEEEEEET
T ss_pred             CEEEEEEC--CCCEEEEEeCCCCeeEEEEECC--CCCc------eEEEE-----ECCEEEEeeC--CCCeEEEEEC
Confidence            74445565  4458999998776555554321  1111      22333     3457777653  3446777774

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.66  E-value=3.2e-06  Score=88.34  Aligned_cols=240  Identities=6%  Similarity=-0.021  Sum_probs=141.2

Q ss_pred             ceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       148 ~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      ..+.++++.++... .++.|+++++.++  ....+...  ..........|+|+|+.|+....+         ..|.++|
T Consensus        97 ~~~~~s~~~l~~~~-~d~~v~lw~~~~~--~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~d---------g~i~iwd  162 (401)
T 4aez_A           97 NLLDWSNLNVVAVA-LERNVYVWNADSG--SVSALAET--DESTYVASVKWSHDGSFLSVGLGN---------GLVDIYD  162 (401)
T ss_dssp             BCEEECTTSEEEEE-ETTEEEEEETTTC--CEEEEEEC--CTTCCEEEEEECTTSSEEEEEETT---------SCEEEEE
T ss_pred             EEEeecCCCEEEEE-CCCeEEEeeCCCC--cEeEeeec--CCCCCEEEEEECCCCCEEEEECCC---------CeEEEEE
Confidence            45666666554443 6778999999887  44333221  013346678999999988876654         4588889


Q ss_pred             cCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (623)
Q Consensus       228 l~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
                      +.+++.  .+.+......+....|  +++.|+....        ...|.++|+...+.  ....+.+..    ..+....
T Consensus       163 ~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~--------dg~i~i~d~~~~~~--~~~~~~~~~----~~v~~~~  224 (401)
T 4aez_A          163 VESQTK--LRTMAGHQARVGCLSW--NRHVLSSGSR--------SGAIHHHDVRIANH--QIGTLQGHS----SEVCGLA  224 (401)
T ss_dssp             TTTCCE--EEEECCCSSCEEEEEE--ETTEEEEEET--------TSEEEEEETTSSSC--EEEEEECCS----SCEEEEE
T ss_pred             CcCCeE--EEEecCCCCceEEEEE--CCCEEEEEcC--------CCCEEEEecccCcc--eeeEEcCCC----CCeeEEE
Confidence            988762  3444433344455667  6677765542        23588889875432  333444444    5677889


Q ss_pred             eCCCCcEEEEEeCCCCeeeEEEEecCCCeEEE-EeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       308 ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                      |+|||++++.... ++  .|..+|+.+++... +......+....|.+            +++.++++........|.++
T Consensus       225 ~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p------------~~~~ll~~~~gs~d~~i~i~  289 (401)
T 4aez_A          225 WRSDGLQLASGGN-DN--VVQIWDARSSIPKFTKTNHNAAVKAVAWCP------------WQSNLLATGGGTMDKQIHFW  289 (401)
T ss_dssp             ECTTSSEEEEEET-TS--CEEEEETTCSSEEEEECCCSSCCCEEEECT------------TSTTEEEEECCTTTCEEEEE
T ss_pred             EcCCCCEEEEEeC-CC--eEEEccCCCCCccEEecCCcceEEEEEECC------------CCCCEEEEecCCCCCEEEEE
Confidence            9999985555544 34  46666777765433 333333333344443            66677776542123456667


Q ss_pred             eCCCCceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          387 DDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       387 d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      |+.+++....-.....+..+  ++++..++......  ...++.+++.+++.
T Consensus       290 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~--dg~i~v~~~~~~~~  339 (401)
T 4aez_A          290 NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP--DNNLSIWSYSSSGL  339 (401)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTT--TCEEEEEEEETTEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecC--CCcEEEEecCCccc
Confidence            87776654322233345555  66777666554322  24677777776653

>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A*

Probab=98.66  E-value=1.1e-07  Score=95.04  Aligned_cols=101  Identities=14%  Similarity=0.035  Sum_probs=73.2

Q ss_pred             CCCEEEEecCCCCCcccCcCC-HHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD  572 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~-~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d  572 (623)
                      ..+.||++||..... ...|. ....+|.++||.|+.+|++|.|....           ....+++.+.++++.++-  .
T Consensus        64 ~~~pVVLvHG~~~~~-~~~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~~-----------~~~~~~la~~I~~l~~~~--g  129 (316)
T 3icv_A           64 VSKPILLVPGTGTTG-PQSFDSNWIPLSAQLGYTPCWISPPPFMLNDT-----------QVNTEYMVNAITTLYAGS--G  129 (316)
T ss_dssp             CSSEEEEECCTTCCH-HHHHTTTHHHHHHHTTCEEEEECCTTTTCSCH-----------HHHHHHHHHHHHHHHHHT--T
T ss_pred             CCCeEEEECCCCCCc-HHHHHHHHHHHHHHCCCeEEEecCCCCCCCcH-----------HHHHHHHHHHHHHHHHHh--C
Confidence            345688899984322 13455 67889999999999999998542111           112467777788777652  2


Q ss_pred             CCceEEEEcChHHHHHHHHh-cC---CCceeEEEecccCC
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AF---RDTFKAGASLYGVS  608 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~---~~~f~a~v~~~g~~  608 (623)
                      .++|.|+||||||.++.+++ .+   +++++..|.+++..
T Consensus       130 ~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~  169 (316)
T 3icv_A          130 NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDY  169 (316)
T ss_dssp             SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCT
T ss_pred             CCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCC
Confidence            37999999999999998877 43   58999999988764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.66  E-value=4.3e-06  Score=84.55  Aligned_cols=196  Identities=11%  Similarity=0.057  Sum_probs=116.3

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCC--CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~--~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g  231 (623)
                      .+.|||++...+.|+++++++..  ...+.+....   .......++++.++.|+++....        ..|.++++++.
T Consensus        41 ~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~---~~~p~glavd~~~~~ly~~d~~~--------~~I~~~~~~g~  109 (316)
T 1ijq_A           41 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWTDSVL--------GTVSVADTKGV  109 (316)
T ss_dssp             TTEEEEEETTTTEEEEEEC--------CEEEECSS---CSCCCEEEEETTTTEEEEEETTT--------TEEEEEETTSS
T ss_pred             CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC---CCCcCEEEEeecCCeEEEEECCC--------CEEEEEeCCCC
Confidence            45899999888899999998610  1233332210   12234567888777777764422        57999999876


Q ss_pred             Ccccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979          232 NIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (623)
Q Consensus       232 ~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~  310 (623)
                      .   .+.+.. +.......+..|++++|+|..+..      ...|+++++++..   ...+....-    ..+..++|++
T Consensus       110 ~---~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~------~~~I~~~~~dG~~---~~~~~~~~~----~~P~gla~d~  173 (316)
T 1ijq_A          110 K---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNGVD---IYSLVTENI----QWPNGITLDL  173 (316)
T ss_dssp             S---EEEEEECTTCCEEEEEEETTTTEEEEEECSS------SCEEEEEETTSCC---EEEEECSSC----SCEEEEEEET
T ss_pred             c---eEEEEECCCCCcceEEeCCCCCEEEEEccCC------CCeEEEEcCCCCC---eEEEEECCC----CCceEEEEec
Confidence            5   444443 333344567999999999987542      2469999987652   222222221    3456788998


Q ss_pred             CCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC
Q 006979          311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (623)
Q Consensus       311 DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~  390 (623)
                      +++.+|.++.  +...|+++|.++...+.+.........|      ..+.+     +++.+||+.  .+..+|++++..+
T Consensus       174 ~~~~lY~~D~--~~~~I~~~d~dg~~~~~~~~~~~~~~~P------~giav-----~~~~ly~~d--~~~~~V~~~~~~~  238 (316)
T 1ijq_A          174 LSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHP------FSLAV-----FEDKVFWTD--IINEAIFSANRLT  238 (316)
T ss_dssp             TTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSE------EEEEE-----ETTEEEEEE--TTTTEEEEEETTT
T ss_pred             cCCEEEEEEC--CCCeEEEEecCCCceEEEeecCCccCCc------EEEEE-----ECCEEEEEE--CCCCeEEEEeCCC
Confidence            8774445565  4557999999876555554321111111      12333     456777765  3445677787644


Q ss_pred             C
Q 006979          391 H  391 (623)
Q Consensus       391 ~  391 (623)
                      +
T Consensus       239 g  239 (316)
T 1ijq_A          239 G  239 (316)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.66  E-value=7.9e-06  Score=85.78  Aligned_cols=261  Identities=9%  Similarity=0.019  Sum_probs=145.3

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcE
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL  167 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l  167 (623)
                      ..+..+.|+|.+.+...-..   +|...+|.....   +....+..        |.-.+.+..++++ .++++...++.|
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~---Dg~i~vwd~~~~---~~~~~l~~--------h~~~V~~v~~~~~~~~l~sgs~D~~i  174 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASE---DATIKVWDYETG---DFERTLKG--------HTDSVQDISFDHSGKLLASCSADMTI  174 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEES---SSCEEEEETTTC---CCCEEECC--------CSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             CcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCC---cEEEEEec--------cCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            34567788883334333322   477777765432   22222211        1112345555554 566777788889


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCccc
Q 006979          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA  247 (623)
Q Consensus       168 ~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~  247 (623)
                      .++|+.++ ...+.+...    ........|+|+|++|+....+         ..+.++|+.++..  +..+......+.
T Consensus       175 ~iwd~~~~-~~~~~~~~h----~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~~~--~~~~~~h~~~v~  238 (410)
T 1vyh_C          175 KLWDFQGF-ECIRTMHGH----DHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYC--VKTFTGHREWVR  238 (410)
T ss_dssp             CEEETTSS-CEEECCCCC----SSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCE--EEEEECCSSCEE
T ss_pred             EEEeCCCC-ceeEEEcCC----CCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcE--EEEEeCCCccEE
Confidence            99999865 222333322    3346678899999988766544         5688999988762  334444445566


Q ss_pred             ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC----------------
Q 006979          248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK----------------  311 (623)
Q Consensus       248 ~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D----------------  311 (623)
                      ...|+|||+.|+-...|.        .|.++|+..+.   ....+.+..    ..+....|+|+                
T Consensus       239 ~~~~~~~g~~l~s~s~D~--------~v~vwd~~~~~---~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~~~~~  303 (410)
T 1vyh_C          239 MVRPNQDGTLIASCSNDQ--------TVRVWVVATKE---CKAELREHR----HVVECISWAPESSYSSISEATGSETKK  303 (410)
T ss_dssp             EEEECTTSSEEEEEETTS--------CEEEEETTTCC---EEEEECCCS----SCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred             EEEECCCCCEEEEEcCCC--------eEEEEECCCCc---eeeEecCCC----ceEEEEEEcCcccccchhhhccccccc
Confidence            678999999887665332        27777887663   233344433    44566778876                


Q ss_pred             ----CcEEEEEeCCCCeeeEEEEecCCCeEEE-EeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          312 ----GELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       312 ----G~l~~~~~~~~g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                          |.+++.... ++  .|..+|..+++... +......+..         +.|.   ++++.| ++...++.-++|  
T Consensus       304 ~~~~g~~l~sgs~-D~--~i~iwd~~~~~~~~~~~~h~~~v~~---------v~~~---~~g~~l-~s~s~D~~i~vw--  365 (410)
T 1vyh_C          304 SGKPGPFLLSGSR-DK--TIKMWDVSTGMCLMTLVGHDNWVRG---------VLFH---SGGKFI-LSCADDKTLRVW--  365 (410)
T ss_dssp             ----CCEEEEEET-TS--EEEEEETTTTEEEEEEECCSSCEEE---------EEEC---SSSSCE-EEEETTTEEEEE--
T ss_pred             cCCCCCEEEEEeC-CC--eEEEEECCCCceEEEEECCCCcEEE---------EEEc---CCCCEE-EEEeCCCeEEEE--
Confidence                444444443 34  46667777775432 3222222222         2332   255544 455566765555  


Q ss_pred             eCCCCc-eeecccCCcceEee--eecCCE
Q 006979          387 DDFGHS-LSLLDIPFTDIDNI--TLGNDC  412 (623)
Q Consensus       387 d~~~~~-~~~lt~~~~~v~~~--~~~~~~  412 (623)
                      |..+++ +..+......+..+  ++++..
T Consensus       366 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          366 DYKNKRCMKTLNAHEHFVTSLDFHKTAPY  394 (410)
T ss_dssp             CCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence            655544 34454444445554  444443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.65  E-value=9e-07  Score=91.51  Aligned_cols=198  Identities=9%  Similarity=-0.080  Sum_probs=116.1

Q ss_pred             eEEEeCC--EEEE-EeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          149 AFRIFGD--TVIF-SNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       149 ~~~~s~d--~l~f-~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      ..++++|  .+++ +...++.|.++|+.++ .....+..     .....+..|||||++++....          ..+.+
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~-~~~~~~~~-----~~~V~~v~fspdg~~l~s~s~----------~~~~~  201 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDL-TEKFEIET-----RGEVKDLHFSTDGKVVAYITG----------SSLEV  201 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTT-EEEEEEEC-----SSCCCEEEECTTSSEEEEECS----------SCEEE
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCC-cEEEEeCC-----CCceEEEEEccCCceEEeccc----------eeEEE
Confidence            3455665  3433 3335677999999876 22233332     234678899999998887653          23677


Q ss_pred             EEcCCCCcccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-eeeeEEEcCCCCCccccC
Q 006979          226 IALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       226 idl~~g~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~~~~~~~~~~~~~~~~~~  303 (623)
                      ++..++... .+.... ....+...+|||||+.|+....+..    ....++..++..... ......+.+..    ..+
T Consensus       202 ~~~~~~~~~-~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~V  272 (365)
T 4h5i_A          202 ISTVTGSCI-ARKTDFDKNWSLSKINFIADDTVLIAASLKKG----KGIVLTKISIKSGNTSVLRSKQVTNRF----KGI  272 (365)
T ss_dssp             EETTTCCEE-EEECCCCTTEEEEEEEEEETTEEEEEEEESSS----CCEEEEEEEEETTEEEEEEEEEEESSC----SCE
T ss_pred             EEeccCcce-eeeecCCCCCCEEEEEEcCCCCEEEEEecCCc----ceeEEeecccccceecceeeeeecCCC----CCe
Confidence            777766510 111222 2233556789999999988775543    244577777765522 11222334433    456


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE-EEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeE
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~-~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~  381 (623)
                      ....|+|||+++..... ++.  |..+|..+++.. .+.. ....+....|+            ||++. +++...++.-
T Consensus       273 ~~~~~Spdg~~lasgs~-D~~--V~iwd~~~~~~~~~~~~gH~~~V~~v~fS------------pdg~~-laS~S~D~tv  336 (365)
T 4h5i_A          273 TSMDVDMKGELAVLASN-DNS--IALVKLKDLSMSKIFKQAHSFAITEVTIS------------PDSTY-VASVSAANTI  336 (365)
T ss_dssp             EEEEECTTSCEEEEEET-TSC--EEEEETTTTEEEEEETTSSSSCEEEEEEC------------TTSCE-EEEEETTSEE
T ss_pred             EeEEECCCCCceEEEcC-CCE--EEEEECCCCcEEEEecCcccCCEEEEEEC------------CCCCE-EEEEeCCCeE
Confidence            67899999995555444 343  556687777643 2322 22233333333            26654 4566678888


Q ss_pred             EEEEEe
Q 006979          382 YLGILD  387 (623)
Q Consensus       382 ~L~~~d  387 (623)
                      +||.+.
T Consensus       337 rvw~ip  342 (365)
T 4h5i_A          337 HIIKLP  342 (365)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            887664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.65  E-value=2.7e-06  Score=97.40  Aligned_cols=263  Identities=11%  Similarity=0.053  Sum_probs=146.8

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ...+..+.|+| +..+....    .+|...+|....+  .....+..         |...+.+..++++ ..+++...++
T Consensus        13 ~~~v~~i~~sp~~~~la~~~----~~g~v~iwd~~~~--~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg   77 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTL----YSGRVEIWNYETQ--VEVRSIQV---------TETPVRAGKFIARKNWIIVGSDDF   77 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTT--EEEEEEEC---------CSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             CCceEEEEECCCCCEEEEEe----CCCEEEEEECCCC--ceEEEEec---------CCCcEEEEEEeCCCCEEEEEeCCC
Confidence            45677899999 55554432    2467667754322  11122111         1112345555555 3344444678


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~  245 (623)
                      .|.++++.++ .....+...    ........|+|+|++|+....+         ..+.++|+.++.. ....+......
T Consensus        78 ~i~vw~~~~~-~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~~~-~~~~~~~~~~~  142 (814)
T 3mkq_A           78 RIRVFNYNTG-EKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENNWA-LEQTFEGHEHF  142 (814)
T ss_dssp             EEEEEETTTC-CEEEEEECC----SSCEEEEEECSSSSEEEEEETT---------SEEEEEEGGGTSE-EEEEEECCSSC
T ss_pred             eEEEEECCCC-cEEEEEecC----CCCEEEEEEeCCCCEEEEEcCC---------CEEEEEECCCCce-EEEEEcCCCCc
Confidence            8999999876 233444432    3446678899999988866543         5688889877631 02333334445


Q ss_pred             ccceeeCC-CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC--CCcEEEEEeCCC
Q 006979          246 YAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDRKN  322 (623)
Q Consensus       246 ~~~p~wSP-DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~--DG~l~~~~~~~~  322 (623)
                      .....|+| ||+.|+....+        ..|.++|+..+..  .........    ..+..+.|+|  ||.+++.... +
T Consensus       143 v~~~~~~p~~~~~l~~~~~d--------g~v~vwd~~~~~~--~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~~~-d  207 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLD--------RTVKVWSLGQSTP--NFTLTTGQE----RGVNYVDYYPLPDKPYMITASD-D  207 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETT--------SEEEEEETTCSSC--SEEEECCCT----TCCCEEEECCSTTCCEEEEECT-T
T ss_pred             EEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCcc--eeEEecCCC----CCEEEEEEEECCCCCEEEEEeC-C
Confidence            66688999 88877766533        3488889876532  222333332    4567889998  8875555544 3


Q ss_pred             CeeeEEEEecCCCeEEE-EeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-ecccCC
Q 006979          323 GFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPF  400 (623)
Q Consensus       323 g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~~~  400 (623)
                      +  .|..+|..+++... +......+....|.            |+++.++ +...+|.  |.++|..+++.. .+....
T Consensus       208 g--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~------------~~~~~l~-~~~~dg~--v~vwd~~~~~~~~~~~~~~  270 (814)
T 3mkq_A          208 L--TIKIWDYQTKSCVATLEGHMSNVSFAVFH------------PTLPIII-SGSEDGT--LKIWNSSTYKVEKTLNVGL  270 (814)
T ss_dssp             S--EEEEEETTTTEEEEEEECCSSCEEEEEEC------------SSSSEEE-EEETTSC--EEEEETTTCSEEEEECCSS
T ss_pred             C--EEEEEECCCCcEEEEEcCCCCCEEEEEEc------------CCCCEEE-EEeCCCe--EEEEECCCCcEEEEeecCC
Confidence            4  46666777766433 32222233333333            2666444 4444565  444577665543 344333


Q ss_pred             cceEee--eecCCE
Q 006979          401 TDIDNI--TLGNDC  412 (623)
Q Consensus       401 ~~v~~~--~~~~~~  412 (623)
                      ..+..+  ++++..
T Consensus       271 ~~v~~~~~~~~~~~  284 (814)
T 3mkq_A          271 ERSWCIATHPTGRK  284 (814)
T ss_dssp             SSEEEEEECTTCGG
T ss_pred             CcEEEEEEccCCCc
Confidence            334443  444443

>3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A*

Probab=98.64  E-value=3.1e-07  Score=96.32  Aligned_cols=119  Identities=15%  Similarity=0.042  Sum_probs=81.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHc------CceEEEEECCCCCCCCchhHHH
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS------RGWAFVDVNYGGSTGYGREFRE  544 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~------~G~~v~~~d~rGs~~~g~~~~~  544 (623)
                      +|..|+.....+.+        ...|.||++||.+.+.  ..|...+..|++      .||.|+++|+||.|.+...-  
T Consensus        93 ~g~~i~~~~~~~~~--------~~~~pllllHG~~~s~--~~~~~~~~~L~~~~~~~~~gf~vv~~DlpG~G~S~~~~--  160 (408)
T 3g02_A           93 EGLTIHFAALFSER--------EDAVPIALLHGWPGSF--VEFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPP--  160 (408)
T ss_dssp             TTEEEEEEEECCSC--------TTCEEEEEECCSSCCG--GGGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCSC--
T ss_pred             CCEEEEEEEecCCC--------CCCCeEEEECCCCCcH--HHHHHHHHHHhcccccccCceEEEEECCCCCCCCCCCC--
Confidence            68999977766543        2235688899996543  356677778887      59999999999976544321  


Q ss_pred             hhccCCccchHHHHHHHHHHHHhCCCCCCC-ceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          545 RLLGRWGIVDVNDCCSCATFLVGSGKADEK-RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       545 ~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~-rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                       ...   ....+++.+.+..+.++  ...+ ++.++|||+||++++.++ .+|++....+...++
T Consensus       161 -~~~---~~~~~~~a~~~~~l~~~--lg~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~  219 (408)
T 3g02_A          161 -LDK---DFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNM  219 (408)
T ss_dssp             -SSS---CCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCC
T ss_pred             -CCC---CCCHHHHHHHHHHHHHH--hCCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCC
Confidence             011   22355666555555443  1234 899999999999999988 788877666665443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.64  E-value=9.5e-06  Score=81.91  Aligned_cols=205  Identities=13%  Similarity=0.096  Sum_probs=119.7

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccce-eeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRT-TAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~-~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ..+..+.++| ++.+...-..   ++...+|.....   ....-.+    .+. .-|...+.+..++++ ..+++...|+
T Consensus        18 ~~V~~l~~~~~~~~~l~s~s~---D~~v~~W~~~~~---~~~~~~~----~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A           18 GWVTSLATSAGQPNLLLSASR---DKTLISWKLTGD---DQKFGVP----VRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             SCEEEEEECSSCTTEEEEEET---TSEEEEEEEEEE---TTEEEEE----EEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceEEEEEccCCCccEEEEecC---CccEEEecCCCC---Ccccccc----ceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            3455677887 5455555443   477777765422   1100000    000 012222345556655 5666777888


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCc
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF  245 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~  245 (623)
                      .|.++|+.++ ...+.+...    ........|+|+++.|+....|         ..+.+.|+.+..   ...+....+.
T Consensus        88 ~v~~wd~~~~-~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~D---------~~i~vwd~~~~~---~~~~~~h~~~  150 (319)
T 3frx_A           88 TLRLWDVATG-ETYQRFVGH----KSDVMSVDIDKKASMIISGSRD---------KTIKVWTIKGQC---LATLLGHNDW  150 (319)
T ss_dssp             EEEEEETTTT-EEEEEEECC----SSCEEEEEECTTSCEEEEEETT---------SCEEEEETTSCE---EEEECCCSSC
T ss_pred             EEEEEECCCC-CeeEEEccC----CCcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCe---EEEEeccCCc
Confidence            8999999876 223334332    2345678899999988776554         347777887654   4555544455


Q ss_pred             ccceeeCCC------CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEe
Q 006979          246 YAFPRMDPR------GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD  319 (623)
Q Consensus       246 ~~~p~wSPD------G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~  319 (623)
                      +....|+|+      +..|+-...+.        .|.+.|+....   ....+.+..    ..+....|+|||++++...
T Consensus       151 v~~~~~~~~~~~~~~~~~l~s~~~d~--------~i~~wd~~~~~---~~~~~~~h~----~~v~~~~~sp~g~~l~s~~  215 (319)
T 3frx_A          151 VSQVRVVPNEKADDDSVTIISAGNDK--------MVKAWNLNQFQ---IEADFIGHN----SNINTLTASPDGTLIASAG  215 (319)
T ss_dssp             EEEEEECCC------CCEEEEEETTS--------CEEEEETTTTE---EEEEECCCC----SCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEEccCCCCCCCccEEEEEeCCC--------EEEEEECCcch---hheeecCCC----CcEEEEEEcCCCCEEEEEe
Confidence            566778885      44565444332        37788887652   333444544    4567889999999655554


Q ss_pred             CCCCeeeEEEEecCCCeEE
Q 006979          320 RKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       320 ~~~g~~~L~~~d~~~~~~~  338 (623)
                      . ++.  |..+|..+++..
T Consensus       216 ~-dg~--i~iwd~~~~~~~  231 (319)
T 3frx_A          216 K-DGE--IMLWNLAAKKAM  231 (319)
T ss_dssp             T-TCE--EEEEETTTTEEE
T ss_pred             C-CCe--EEEEECCCCcEE
Confidence            4 454  555677776643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.64  E-value=2.9e-06  Score=89.16  Aligned_cols=249  Identities=11%  Similarity=0.048  Sum_probs=140.2

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+..++++ .++++...++.|.++|+.++ ...+.+...    ........|+|+|+.|+....|         ..|.+
T Consensus       111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~~~~~l~~h----~~~V~~v~~~~~~~~l~sgs~D---------~~i~i  176 (410)
T 1vyh_C          111 VTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGH----TDSVQDISFDHSGKLLASCSAD---------MTIKL  176 (410)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCCCE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEEecc----CCcEEEEEEcCCCCEEEEEeCC---------CeEEE
Confidence            445666665 56777778889999999877 334445432    3346778899999987766554         34677


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      +|+.+++.  .+.+......+....|+|||++|+-...|        ..|.++|+..+.   ....+.+..    ..+..
T Consensus       177 wd~~~~~~--~~~~~~h~~~V~~v~~~p~~~~l~s~s~D--------~~i~~wd~~~~~---~~~~~~~h~----~~v~~  239 (410)
T 1vyh_C          177 WDFQGFEC--IRTMHGHDHNVSSVSIMPNGDHIVSASRD--------KTIKMWEVQTGY---CVKTFTGHR----EWVRM  239 (410)
T ss_dssp             EETTSSCE--EECCCCCSSCEEEEEECSSSSEEEEEETT--------SEEEEEETTTCC---EEEEEECCS----SCEEE
T ss_pred             EeCCCCce--eEEEcCCCCCEEEEEEeCCCCEEEEEeCC--------CeEEEEECCCCc---EEEEEeCCC----ccEEE
Confidence            78887651  23343334456678899999988766533        248888988763   233444544    45567


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEE-EeecccccccccccccCcceeEE-------eecCCCCEEEEEEEE
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEII-------QSHGEKNLIACSYRQ  377 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~l-------~~s~~~~~l~~~~~~  377 (623)
                      ..|++||++++.... ++.-+  .+|..+++... +......+....|.+........       ......+.++++...
T Consensus       240 ~~~~~~g~~l~s~s~-D~~v~--vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~  316 (410)
T 1vyh_C          240 VRPNQDGTLIASCSN-DQTVR--VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  316 (410)
T ss_dssp             EEECTTSSEEEEEET-TSCEE--EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             EEECCCCCEEEEEcC-CCeEE--EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence            789999986655554 45444  45665655332 22222222222333211000000       000011345666666


Q ss_pred             CCeEEEEEEeCCCCce-eecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          378 NGRSYLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       378 ~g~~~L~~~d~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ++.  |.++|+.+++. ..+......+..+  ++++..++ +++..   ..|...++.+++
T Consensus       317 D~~--i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~-s~s~D---~~i~vwd~~~~~  371 (410)
T 1vyh_C          317 DKT--IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADD---KTLRVWDYKNKR  371 (410)
T ss_dssp             TSE--EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE-EEETT---TEEEEECCTTSC
T ss_pred             CCe--EEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEE-EEeCC---CeEEEEECCCCc
Confidence            665  44557766654 3444334445555  55555443 44322   456667766554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.63  E-value=8.2e-06  Score=83.53  Aligned_cols=242  Identities=8%  Similarity=-0.074  Sum_probs=129.2

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCC--CcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDE--PSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~--~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ..+..+.|+|++.++.+-..   ++...+|.....   +  ....+..        |...+.+..++++ ..+++...++
T Consensus         9 ~~i~~~~~s~~~~~l~~~~~---d~~v~i~~~~~~---~~~~~~~~~~--------h~~~v~~~~~~~~~~~l~~~~~dg   74 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAICPN---NHEVHIYEKSGN---KWVQVHELKE--------HNGQVTGVDWAPDSNRIVTCGTDR   74 (372)
T ss_dssp             SCCCEEEECTTSSEEEEECS---SSEEEEEEEETT---EEEEEEEEEC--------CSSCEEEEEEETTTTEEEEEETTS
T ss_pred             CCeEEEEECCCCCEEEEEeC---CCEEEEEeCCCC---cEEeeeeecC--------CCCcccEEEEeCCCCEEEEEcCCC
Confidence            45678899983333333322   466666654322   2  1111111        1222345566655 4555555778


Q ss_pred             cEEEEeCCCCCCCce-e--cCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc-cceeccc
Q 006979          166 RLYKHSIDSKDSSPL-P--ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-EPKVLVS  241 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~-~--Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~-~~~~l~~  241 (623)
                      .|.++|+.++  ... .  +...    ........|+|+|++|+....+         ..+.++|++.+... ....+..
T Consensus        75 ~i~vwd~~~~--~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~~  139 (372)
T 1k8k_C           75 NAYVWTLKGR--TWKPTLVILRI----NRAARCVRWAPNEKKFAVGSGS---------RVISICYFEQENDWWVCKHIKK  139 (372)
T ss_dssp             CEEEEEEETT--EEEEEEECCCC----SSCEEEEEECTTSSEEEEEETT---------SSEEEEEEETTTTEEEEEEECT
T ss_pred             eEEEEECCCC--eeeeeEEeecC----CCceeEEEECCCCCEEEEEeCC---------CEEEEEEecCCCcceeeeeeec
Confidence            8999998765  321 2  1221    3346678899999988876654         33666666655310 0122222


Q ss_pred             C-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCC---------------ceeeeEEEcCCCCCccccCcC
Q 006979          242 G-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG---------------DVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       242 ~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~---------------~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      + ........|+|||++|+....+.        .|+++|+....               .-.....+.+..    ..+..
T Consensus       140 ~~~~~i~~~~~~~~~~~l~~~~~dg--------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~  207 (372)
T 1k8k_C          140 PIRSTVLSLDWHPNSVLLAAGSCDF--------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC----GWVHG  207 (372)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTS--------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS----SCEEE
T ss_pred             ccCCCeeEEEEcCCCCEEEEEcCCC--------CEEEEEcccccccccccccccccccchhhheEecCCCC----CeEEE
Confidence            2 34456678999999888765332        37788854110               001222333333    45678


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE-EEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      +.|+|||++++.... ++.  |..+|..+++.. .+......+....|         .+   +++ ++++. .++.-++|
T Consensus       208 ~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~---------~~---~~~-~l~~~-~d~~i~i~  270 (372)
T 1k8k_C          208 VCFSANGSRVAWVSH-DST--VCLADADKKMAVATLASETLPLLAVTF---------IT---ESS-LVAAG-HDCFPVLF  270 (372)
T ss_dssp             EEECSSSSEEEEEET-TTE--EEEEEGGGTTEEEEEECSSCCEEEEEE---------EE---TTE-EEEEE-TTSSCEEE
T ss_pred             EEECCCCCEEEEEeC-CCE--EEEEECCCCceeEEEccCCCCeEEEEE---------ec---CCC-EEEEE-eCCeEEEE
Confidence            899999985555544 354  556677666543 33322222332333         32   544 44444 56766676


Q ss_pred             EEeC
Q 006979          385 ILDD  388 (623)
Q Consensus       385 ~~d~  388 (623)
                      .++.
T Consensus       271 ~~~~  274 (372)
T 1k8k_C          271 TYDS  274 (372)
T ss_dssp             EEET
T ss_pred             EccC
Confidence            6654

>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A

Probab=98.63  E-value=8.3e-08  Score=97.74  Aligned_cols=110  Identities=15%  Similarity=0.120  Sum_probs=78.1

Q ss_pred             CCCCEEEEecCCCCCc--------ccCcC----CHHhHHHHcCceE---EEEECCCCCCCCchhHHHhhccCCccchHHH
Q 006979          493 EKPPLLVKSHGGPTSE--------ARGIL----NLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVND  557 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~--------~~~~~----~~~~~~~a~~G~~---v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D  557 (623)
                      .+.| ||++||.....        ....|    ...++.|.++||.   |+.+|++|.+   ..-... .........++
T Consensus        39 ~~~p-VVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g~G---~S~~~~-~~~~~~~~~~~  113 (342)
T 2x5x_A           39 TKTP-VIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSS---EQGSAQ-YNYHSSTKYAI  113 (342)
T ss_dssp             CSCC-EEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSCHH---HHTCGG-GCCBCHHHHHH
T ss_pred             CCCe-EEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCCCC---ccCCcc-ccCCHHHHHHH
Confidence            3344 78899985532        22355    6788999999999   9999999843   211000 01112234678


Q ss_pred             HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC--CCceeEEEecccCCC
Q 006979          558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF--RDTFKAGASLYGVSI  609 (623)
Q Consensus       558 ~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~--~~~f~a~v~~~g~~d  609 (623)
                      +.+.++.+.++-  ..++|.|+||||||.+++.++ .+  |++++.+|.+++...
T Consensus       114 l~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~~  166 (342)
T 2x5x_A          114 IKTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIR  166 (342)
T ss_dssp             HHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCTT
T ss_pred             HHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCcc
Confidence            888888877652  247999999999999999988 66  899999999988754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.63  E-value=4.4e-06  Score=86.61  Aligned_cols=242  Identities=7%  Similarity=-0.079  Sum_probs=138.6

Q ss_pred             CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCC-------ceecCCCCCCCCeeecceeeCCC----C---CEEEEEEecc
Q 006979          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSS-------PLPITPDYGEPLVSYADGIFDPR----F---NRYVTVREDR  212 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~-------~~~Lt~~~~~~~~~~~d~~~sPd----G---~~l~~v~~~~  212 (623)
                      +.+.++++ .++++...++.|.++++.++  .       ...+...    ........|+|+    |   ++|+....+ 
T Consensus        19 i~~~~~~~-~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~g~~~~~l~s~~~d-   90 (397)
T 1sq9_A           19 IFSVSACN-SFTVSCSGDGYLKVWDNKLL--DNENPKDKSYSHFVH----KSGLHHVDVLQAIERDAFELCLVATTSFS-   90 (397)
T ss_dssp             EEEEEECS-SEEEEEETTSEEEEEESBCC--TTCCGGGGEEEEECC----TTCEEEEEEEEEEETTTEEEEEEEEEETT-
T ss_pred             eEEEEecC-CeEEEEcCCCEEEEEECCCc--ccccCCCcceEEecC----CCcEEEEEEecccccCCccccEEEEEcCC-
Confidence            44556666 45566667888999999876  3       2333322    234567889999    8   888776553 


Q ss_pred             CCCCCCceeEEEEEEcCCCCccc---ceecccC-----CCcccceeeC----CCCCE-EEEEEecCCCCCCCceEEEEEE
Q 006979          213 RQDALNSTTEIVAIALNGQNIQE---PKVLVSG-----SDFYAFPRMD----PRGER-MAWIEWHHPNMPWDKAELWVGY  279 (623)
Q Consensus       213 ~~~~~~~~~~L~~idl~~g~~~~---~~~l~~~-----~~~~~~p~wS----PDG~~-la~~~~~~~~~p~~~~~L~v~d  279 (623)
                              ..|+++|+.+++...   ...+...     ...+....|+    |||+. |+....+.        .|+++|
T Consensus        91 --------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--------~i~iwd  154 (397)
T 1sq9_A           91 --------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG--------TTYIWK  154 (397)
T ss_dssp             --------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS--------CEEEEE
T ss_pred             --------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC--------cEEEEe
Confidence                    447777877665100   1222222     2455667899    99998 77665332        378888


Q ss_pred             ecC------CCcee--ee-EEE------cCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec-
Q 006979          280 ISE------NGDVY--KR-VCV------AGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-  343 (623)
Q Consensus       280 ~~~------~~~~~--~~-~~~------~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~-  343 (623)
                      +..      +..+.  .. .+.      ....    ..+....|+|+| +++.... ++  .|..+|+.+++....... 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~-~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~  226 (397)
T 1sq9_A          155 FHPFADESNSLTLNWSPTLELQGTVESPMTPS----QFATSVDISERG-LIATGFN-NG--TVQISELSTLRPLYNFESQ  226 (397)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSC----CCCCEEEECTTS-EEEEECT-TS--EEEEEETTTTEEEEEEECC
T ss_pred             CCccccccccceeeccCcceeeeeeccccCCC----CCceEEEECCCc-eEEEEeC-CC--cEEEEECCCCceeEEEecc
Confidence            876      42211  11 221      1122    457788999999 6666554 44  466677777654433322 


Q ss_pred             ------ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce-eeccc-------------CCcce
Q 006979          344 ------DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDI-------------PFTDI  403 (623)
Q Consensus       344 ------~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~-~~lt~-------------~~~~v  403 (623)
                            ...+....|.            |+++.|+.....++...|.++|+.+++. ..+..             ....+
T Consensus       227 ~~h~~~~~~i~~i~~~------------~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  294 (397)
T 1sq9_A          227 HSMINNSNSIRSVKFS------------PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV  294 (397)
T ss_dssp             C---CCCCCEEEEEEC------------SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCE
T ss_pred             ccccccCCccceEEEC------------CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcE
Confidence                  2233333333            2777777666554456788889876654 34443             33345


Q ss_pred             Eee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          404 DNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       404 ~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ..+  ++++..++ ++..   ...|+.+++..++.
T Consensus       295 ~~~~~~~~~~~l~-~~~~---dg~i~iwd~~~~~~  325 (397)
T 1sq9_A          295 MSLSFNDSGETLC-SAGW---DGKLRFWDVKTKER  325 (397)
T ss_dssp             EEEEECSSSSEEE-EEET---TSEEEEEETTTTEE
T ss_pred             EEEEECCCCCEEE-EEeC---CCeEEEEEcCCCce
Confidence            555  55666544 3332   24788888887753

>3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A*

Probab=98.62  E-value=2.8e-08  Score=98.58  Aligned_cols=92  Identities=15%  Similarity=-0.014  Sum_probs=61.5

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHH-HHhCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF-LVGSGKADE  573 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~-l~~~~~~d~  573 (623)
                      .|.||++||.+.  ....|...+..|++ ||.|+.+|+||.|....   .     .....+++..+.+.. +.+..  +.
T Consensus        51 ~~~lvllHG~~~--~~~~~~~l~~~L~~-~~~v~~~D~~G~G~S~~---~-----~~~~~~~~~a~~~~~~l~~~~--~~  117 (280)
T 3qmv_A           51 PLRLVCFPYAGG--TVSAFRGWQERLGD-EVAVVPVQLPGRGLRLR---E-----RPYDTMEPLAEAVADALEEHR--LT  117 (280)
T ss_dssp             SEEEEEECCTTC--CGGGGTTHHHHHCT-TEEEEECCCTTSGGGTT---S-----CCCCSHHHHHHHHHHHHHHTT--CS
T ss_pred             CceEEEECCCCC--ChHHHHHHHHhcCC-CceEEEEeCCCCCCCCC---C-----CCCCCHHHHHHHHHHHHHHhC--CC
Confidence            378999999853  34467777888877 99999999999543211   1     112234444433333 33221  34


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCcee
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFK  599 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~  599 (623)
                      +++.|+|||+||.+++.++ .+|++.+
T Consensus       118 ~~~~lvG~S~Gg~va~~~a~~~p~~~~  144 (280)
T 3qmv_A          118 HDYALFGHSMGALLAYEVACVLRRRGA  144 (280)
T ss_dssp             SSEEEEEETHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEeCHhHHHHHHHHHHHHHcCC
Confidence            7899999999999999988 6665544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.61  E-value=2.3e-05  Score=81.57  Aligned_cols=149  Identities=11%  Similarity=0.029  Sum_probs=94.2

Q ss_pred             ceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       148 ~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      .+..++++ ..+++...++.|.++|+.++ .....+...    ........|+|+|++|+....+         ..+.++
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h----~~~v~~~~~~p~~~~l~s~s~d---------~~v~iw  192 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGH----EQDIYSLDYFPSGDKLVSGSGD---------RTVRIW  192 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEccC----CCCEEEEEEcCCCCEEEEecCC---------CcEEEE
Confidence            35666665 55666667888999999876 222334322    3346678899999988766543         568888


Q ss_pred             EcCCCCcccceecccCCCcccceeeCC-CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE-------cCCCCC
Q 006979          227 ALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-------AGFDPT  298 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~~~~~~p~wSP-DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~-------~~~~~~  298 (623)
                      |+.+++   ........+......|+| ||++|+....+.        .|.++|+..+..   ...+       .+..  
T Consensus       193 d~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~--------~v~iwd~~~~~~---~~~~~~~~~~~~~h~--  256 (393)
T 1erj_A          193 DLRTGQ---CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDR--------AVRVWDSETGFL---VERLDSENESGTGHK--  256 (393)
T ss_dssp             ETTTTE---EEEEEECSSCEEEEEECSTTCCEEEEEETTS--------CEEEEETTTCCE---EEEEC------CCCS--
T ss_pred             ECCCCe---eEEEEEcCCCcEEEEEECCCCCEEEEEcCCC--------cEEEEECCCCcE---EEeecccccCCCCCC--
Confidence            998876   332222333445578999 899888766443        277888876632   1112       1222  


Q ss_pred             ccccCcCceeCCCCcEEEEEeCCCCeeeEEE
Q 006979          299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHK  329 (623)
Q Consensus       299 ~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~  329 (623)
                        ..+....|+|||++++.... ++.-+||-
T Consensus       257 --~~v~~v~~~~~g~~l~s~s~-d~~v~~wd  284 (393)
T 1erj_A          257 --DSVYSVVFTRDGQSVVSGSL-DRSVKLWN  284 (393)
T ss_dssp             --SCEEEEEECTTSSEEEEEET-TSEEEEEE
T ss_pred             --CCEEEEEECCCCCEEEEEeC-CCEEEEEE
Confidence              45667899999995555554 46555553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.61  E-value=5e-06  Score=86.64  Aligned_cols=242  Identities=10%  Similarity=-0.013  Sum_probs=133.6

Q ss_pred             CCceEEEeCC-E-EEEEeCCCCcEEEEeC----CCCCC------CceecCCCCCC------CCeeecceeeCCCCCEEEE
Q 006979          146 GGGAFRIFGD-T-VIFSNYKDQRLYKHSI----DSKDS------SPLPITPDYGE------PLVSYADGIFDPRFNRYVT  207 (623)
Q Consensus       146 g~~~~~~s~d-~-l~f~~~~~~~l~~~d~----~~g~~------~~~~Lt~~~~~------~~~~~~d~~~sPdG~~l~~  207 (623)
                      .+.+..++++ . ++++...++.|.++++    .++ .      ....+......      .........|+|+|++|+.
T Consensus        47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  125 (425)
T 1r5m_A           47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEG-KKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT  125 (425)
T ss_dssp             CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred             ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCc-cccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence            3566777765 4 6666667788999998    766 2      12333321000      1235667889999998887


Q ss_pred             EEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCcee
Q 006979          208 VREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY  287 (623)
Q Consensus       208 v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~  287 (623)
                      ...+         ..|.++|..+..   ...+......+....|+|||++|+....+.        .|.++++..+.   
T Consensus       126 ~~~d---------g~i~i~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~i~iwd~~~~~---  182 (425)
T 1r5m_A          126 GVEN---------GELRLWNKTGAL---LNVLNFHRAPIVSVKWNKDGTHIISMDVEN--------VTILWNVISGT---  182 (425)
T ss_dssp             EETT---------SCEEEEETTSCE---EEEECCCCSCEEEEEECTTSSEEEEEETTC--------CEEEEETTTTE---
T ss_pred             EeCC---------CeEEEEeCCCCe---eeeccCCCccEEEEEECCCCCEEEEEecCC--------eEEEEECCCCc---
Confidence            6554         347777855443   455554455566789999999988776332        38888887662   


Q ss_pred             eeEEEcCCCCC-----------ccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEE-Eeeccccccccccccc
Q 006979          288 KRVCVAGFDPT-----------IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFG  355 (623)
Q Consensus       288 ~~~~~~~~~~~-----------~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~  355 (623)
                      ....+......           -...+....|++++.++.....  +  .|+.+|..+++... +......+...     
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g--~i~~~d~~~~~~~~~~~~~~~~i~~~-----  253 (425)
T 1r5m_A          183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK--G--AIFVYQITEKTPTGKLIGHHGPISVL-----  253 (425)
T ss_dssp             EEEEECCC---------------CCCBSCCEEEETTEEEEECGG--G--CEEEEETTCSSCSEEECCCSSCEEEE-----
T ss_pred             EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC--C--eEEEEEcCCCceeeeeccCCCceEEE-----
Confidence            22222222200           0001678899999854443332  3  57777777765332 22222222222     


Q ss_pred             CcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce-eecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 006979          356 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (623)
Q Consensus       356 ~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~  432 (623)
                          .+.   ++++.|+ +...++.  |.++|+..++. ..+......+..+  ++++  .++++..   ...|+.+++.
T Consensus       254 ----~~~---~~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~---d~~i~i~d~~  318 (425)
T 1r5m_A          254 ----EFN---DTNKLLL-SASDDGT--LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSM---DGSVRLWSLK  318 (425)
T ss_dssp             ----EEE---TTTTEEE-EEETTSC--EEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEET---TSEEEEEETT
T ss_pred             ----EEC---CCCCEEE-EEcCCCE--EEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeC---CCcEEEEECC
Confidence                333   2666444 4445555  45556665543 3444334445555  4444  4444433   2478888887


Q ss_pred             CCc
Q 006979          433 DHK  435 (623)
Q Consensus       433 ~~~  435 (623)
                      +++
T Consensus       319 ~~~  321 (425)
T 1r5m_A          319 QNT  321 (425)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.60  E-value=5.3e-06  Score=86.84  Aligned_cols=196  Identities=11%  Similarity=0.061  Sum_probs=118.0

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCC--CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~--~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g  231 (623)
                      .+.|||++...++|+++++++..  .....+...   ........++++.++.|+++....        ..|.++++++.
T Consensus       123 ~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~---~~~~p~glavD~~~~~lY~~d~~~--------~~I~~~~~~g~  191 (400)
T 3p5b_L          123 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---DIQAPDGLAVDWIHSNIYWTDSVL--------GTVSVADTKGV  191 (400)
T ss_dssp             TTEEEEEETTTTEEEEEEC------CCCEEEECS---SCSCEEEEEEETTTTEEEEEETTT--------TEEEEECTTTC
T ss_pred             cCceEEEecCCCeEEEEEcccCCCCCcceEEEeC---CCCCcccEEEEecCCceEEEECCC--------CeEEEEeCCCC
Confidence            45899999888889999987520  022333221   012334567888777787764322        57999999987


Q ss_pred             Ccccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979          232 NIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (623)
Q Consensus       232 ~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~  310 (623)
                      .   .+.+.. +.......+..|.+.+|+|..+..      ...|+++++++..   ...++...-    ..+..+++++
T Consensus       192 ~---~~~l~~~~~~~P~~iavdp~~g~ly~td~~~------~~~I~~~~~dG~~---~~~~~~~~l----~~P~glavd~  255 (400)
T 3p5b_L          192 K---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNGVD---IYSLVTENI----QWPNGITLDL  255 (400)
T ss_dssp             S---EEEEEECSSCCEEEEEEETTTTEEEEEECSS------SCCEEEEETTSCS---CEEEECSSC----SCEEEEEEET
T ss_pred             c---eEEEEeCCCCCcceEEEecccCeEEEEeCCC------CCEEEEEeCCCCc---cEEEEECCC----CceEEEEEEe
Confidence            6   444443 333334557999889999987643      2359999998762   233333222    3456788998


Q ss_pred             CCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC
Q 006979          311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (623)
Q Consensus       311 DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~  390 (623)
                      +++.+|.++.  +...|+++|+++...+.+.........|      ..+.+     +++.+||+.  .+...|+++|..+
T Consensus       256 ~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P------~gl~v-----~~~~lywtd--~~~~~V~~~~~~~  320 (400)
T 3p5b_L          256 LSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHP------FSLAV-----FEDKVFWTD--IINEAIFSANRLT  320 (400)
T ss_dssp             TTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSE------EEEEE-----ETTEEEEEE--SSSCSEEEEESSS
T ss_pred             CCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCC------EEEEE-----eCCEEEEec--CCCCeEEEEEcCC
Confidence            8774445565  4568999999877666665432222211      12222     456788776  3344577777443


Q ss_pred             C
Q 006979          391 H  391 (623)
Q Consensus       391 ~  391 (623)
                      |
T Consensus       321 G  321 (400)
T 3p5b_L          321 G  321 (400)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.60  E-value=8e-06  Score=85.47  Aligned_cols=233  Identities=10%  Similarity=0.007  Sum_probs=138.7

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-c
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q  234 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-~  234 (623)
                      .++|+.  ...|.++++++.  ..+.+...    ......+.|++.++.|+++....        ..|+++++++... .
T Consensus        85 ~ll~~~--~~~I~~i~l~~~--~~~~~~~~----~~~~~~l~~d~~~~~lywsD~~~--------~~I~~~~~~g~~~~~  148 (400)
T 3p5b_L           85 YLFFTN--RHEVRKMTLDRS--EYTSLIPN----LRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVS  148 (400)
T ss_dssp             EEEEEE--TTEEEEECTTSC--SCEEEECS----CSCEEEEEEETTTTEEEEEETTT--------TEEEEEEC------C
T ss_pred             eeEEec--cceeEEEccCCc--ceeEeccc----cCcceEEeeeeccCceEEEecCC--------CeEEEEEcccCCCCC
Confidence            466764  356999999865  44454433    23345678999888888875432        5799999986210 0


Q ss_pred             cceec-ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          235 EPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       235 ~~~~l-~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      ....+ ..+.....+.++.+.++.|||....       ...|.++++++..   ...++....    ..+..++..|.+.
T Consensus       149 ~~~~~~~~~~~~p~glavD~~~~~lY~~d~~-------~~~I~~~~~~g~~---~~~l~~~~~----~~P~~iavdp~~g  214 (400)
T 3p5b_L          149 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVK---RKTLFRENG----SKPRAIVVDPVHG  214 (400)
T ss_dssp             CCEEEECSSCSCEEEEEEETTTTEEEEEETT-------TTEEEEECTTTCS---EEEEEECSS----CCEEEEEEETTTT
T ss_pred             cceEEEeCCCCCcccEEEEecCCceEEEECC-------CCeEEEEeCCCCc---eEEEEeCCC----CCcceEEEecccC
Confidence            02333 3343444556788878889988633       3468899987652   233333222    2345667888655


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~  393 (623)
                      .+|.++. .....|+++++++...+.+....  +..|      +.+.+-   ++++.|||+.  .+..+|+++|++++..
T Consensus       215 ~ly~td~-~~~~~I~~~~~dG~~~~~~~~~~--l~~P------~glavd---~~~~~lY~aD--~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          215 FMYWTDW-GTPAKIKKGGLNGVDIYSLVTEN--IQWP------NGITLD---LLSGRLYWVD--SKLHSISSIDVNGGNR  280 (400)
T ss_dssp             EEEEEEC-SSSCCEEEEETTSCSCEEEECSS--CSCE------EEEEEE---TTTTEEEEEE--TTTTEEEEEETTSCCC
T ss_pred             eEEEEeC-CCCCEEEEEeCCCCccEEEEECC--CCce------EEEEEE---eCCCEEEEEE--CCCCEEEEEeCCCCcc
Confidence            4445565 23357999999876666554321  1111      233333   2678899885  4456899999988776


Q ss_pred             eecccCC---cceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          394 SLLDIPF---TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       394 ~~lt~~~---~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      +.+....   ..-.++..+++.+|++-.   ....|++++..+|+
T Consensus       281 ~~~~~~~~~l~~P~gl~v~~~~lywtd~---~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          281 KTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS  322 (400)
T ss_dssp             EEEEECSSTTSSEEEEEEETTEEEEEES---SSCSEEEEESSSCC
T ss_pred             EEEEeCCCCCCCCEEEEEeCCEEEEecC---CCCeEEEEEcCCCC
Confidence            6554321   122344557778877653   23468888865554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.60  E-value=1.7e-06  Score=90.39  Aligned_cols=233  Identities=11%  Similarity=0.050  Sum_probs=128.6

Q ss_pred             CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC--cccceec
Q 006979          162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--IQEPKVL  239 (623)
Q Consensus       162 ~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~--~~~~~~l  239 (623)
                      ..++.|.++++.++ ...+.+...  ..........|+|+|++|+....+         ..|.++|+.+..  ......+
T Consensus        42 ~~d~~v~iw~~~~~-~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d---------g~v~vw~~~~~~~~~~~~~~~  109 (416)
T 2pm9_A           42 STDSSLELWSLLAA-DSEKPIASL--QVDSKFNDLDWSHNNKIIAGALDN---------GSLELYSTNEANNAINSMARF  109 (416)
T ss_dssp             CCCCCCEEEESSSG-GGCSCSCCC--CCSSCEEEEEECSSSSCEEEEESS---------SCEEEECCSSTTSCCCEEEEC
T ss_pred             CCCCeEEEEEccCC-CCCcEEEEE--ecCCceEEEEECCCCCeEEEEccC---------CeEEEeecccccccccchhhc
Confidence            56678999999865 111122111  013456778999999988776554         347777887611  0013444


Q ss_pred             ccCCCcccceeeCCC-CCEEEEEEecCCCCCCCceEEEEEEecCCC------ceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          240 VSGSDFYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENG------DVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       240 ~~~~~~~~~p~wSPD-G~~la~~~~~~~~~p~~~~~L~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                      ......+...+|+|| ++.|+....+        ..|.++|+..+.      .........+..    ..+..+.|+|++
T Consensus       110 ~~h~~~v~~~~~~~~~~~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~  177 (416)
T 2pm9_A          110 SNHSSSVKTVKFNAKQDNVLASGGNN--------GEIFIWDMNKCTESPSNYTPLTPGQSMSSV----DEVISLAWNQSL  177 (416)
T ss_dssp             CCSSSCCCEEEECSSSTTBEEEECSS--------SCEEBCBTTTTSSCTTTCCCBCCCCSCCSS----CCCCEEEECSSC
T ss_pred             cCCccceEEEEEcCCCCCEEEEEcCC--------CeEEEEECCCCccccccccccccccccCCC----CCeeEEEeCCCC
Confidence            444455667889999 7766554422        238888887663      100000011222    456789999995


Q ss_pred             -cEEEEEeCCCCeeeEEEEecCCCeEEEEeec-------ccccccccccccCcceeEEeecCCCCEEEEEEEECC-eEEE
Q 006979          313 -ELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-------DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYL  383 (623)
Q Consensus       313 -~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~-------~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-~~~L  383 (623)
                       .+++.... ++  .|..+|+.+++.......       ...+..         +.+.   |++..++++...++ ...|
T Consensus       178 ~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~---------~~~~---~~~~~~l~~~~~d~~~~~i  242 (416)
T 2pm9_A          178 AHVFASAGS-SN--FASIWDLKAKKEVIHLSYTSPNSGIKQQLSV---------VEWH---PKNSTRVATATGSDNDPSI  242 (416)
T ss_dssp             TTEEEEESS-SS--CEEEEETTTTEEEEEECCCCCSSCCCCCEEE---------EEEC---SSCTTEEEEEECCSSSCCC
T ss_pred             CcEEEEEcC-CC--CEEEEECCCCCcceEEeccccccccCCceEE---------EEEC---CCCCCEEEEEECCCCCceE
Confidence             46666554 34  466677777764433322       112222         2332   26655555555554 2256


Q ss_pred             EEEeCCCC-c-eeecc-cCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          384 GILDDFGH-S-LSLLD-IPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       384 ~~~d~~~~-~-~~~lt-~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      .++|+.++ . ...+. .....+..+  +++++.++++++.   ...|..+++.+++.
T Consensus       243 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---dg~v~~wd~~~~~~  297 (416)
T 2pm9_A          243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR---DNTVLLWNPESAEQ  297 (416)
T ss_dssp             CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES---SSEEEEECSSSCCE
T ss_pred             EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC---CCCEEEeeCCCCcc
Confidence            66677664 2 33343 333445555  5534445555543   24688888877653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.60  E-value=5.9e-06  Score=83.58  Aligned_cols=273  Identities=8%  Similarity=-0.010  Sum_probs=145.3

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCC---CcccCCCCCccceeeeecCCceEEEeCC-E-EEEEeC
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDE---PSDITPKEYAVRTTAQEYGGGAFRIFGD-T-VIFSNY  162 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~---~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~-l~f~~~  162 (623)
                      ..+..+.|+| +..++ +-..   +|...+|.....  ..   .+.+.         .+...+.+..++++ . .+++..
T Consensus        12 ~~v~~~~~s~~~~~l~-~~~~---d~~v~iw~~~~~--~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLL-ITSW---DGSLTVYKFDIQ--AKNVDLLQSL---------RYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             SCEEEEEEEGGGTEEE-EEET---TSEEEEEEEETT--TTEEEEEEEE---------ECSSCEEEEEEEESSSEEEEEEE
T ss_pred             CcEEEEEEcCCCCEEE-EEcC---CCeEEEEEeCCC--Cccccceeee---------ecCCceEEEEECCCCCcEEEEEc
Confidence            4466788888 55443 3322   477677765433  10   11111         11222344555533 5 566666


Q ss_pred             CCCcEEEEeC-CCCCCCceecCC--CCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC---------
Q 006979          163 KDQRLYKHSI-DSKDSSPLPITP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG---------  230 (623)
Q Consensus       163 ~~~~l~~~d~-~~g~~~~~~Lt~--~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~---------  230 (623)
                      .++.|+++++ .++  ....+..  .    ........|+| ++.++....+         ..|.++|+.+         
T Consensus        77 ~dg~i~~wd~~~~~--~~~~~~~~~~----~~~v~~l~~~~-~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           77 VQGEILKVDLIGSP--SFQALTNNEA----NLGICRICKYG-DDKLIAASWD---------GLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             TTSCEEEECSSSSS--SEEECBSCCC----CSCEEEEEEET-TTEEEEEETT---------SEEEEECHHHHTTBCEEEE
T ss_pred             CCCeEEEEEeccCC--ceEeccccCC----CCceEEEEeCC-CCEEEEEcCC---------CeEEEEccccccccccccc
Confidence            7888999999 876  5555554  3    34566788999 8887766543         5688888876         


Q ss_pred             CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC-CCceeeeEEEcCCCCCccccCcCceeC
Q 006979          231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWS  309 (623)
Q Consensus       231 g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ws  309 (623)
                      ++.  ...+. .........|+||+  |+....        ...|.++|+.. ... ..........    ..+..+.|+
T Consensus       141 ~~~--~~~~~-~~~~v~~~~~~~~~--l~~~~~--------d~~i~i~d~~~~~~~-~~~~~~~~~~----~~i~~i~~~  202 (342)
T 1yfq_A          141 NLN--SNNTK-VKNKIFTMDTNSSR--LIVGMN--------NSQVQWFRLPLCEDD-NGTIEESGLK----YQIRDVALL  202 (342)
T ss_dssp             ESC--SSSSS-SCCCEEEEEECSSE--EEEEES--------TTEEEEEESSCCTTC-CCEEEECSCS----SCEEEEEEC
T ss_pred             CCe--eeEEe-eCCceEEEEecCCc--EEEEeC--------CCeEEEEECCccccc-cceeeecCCC----CceeEEEEC
Confidence            431  22222 33445567899998  554442        23588999887 422 1222233333    456788999


Q ss_pred             C-CCcEEEEEeCCCCeeeEEEEecC-----CCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          310 S-KGELFFVTDRKNGFWNLHKWIES-----NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       310 ~-DG~l~~~~~~~~g~~~L~~~d~~-----~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      | ||++++.... +|.-.||.++..     ......+...........-......+.+.   |+++.|+ +...+|.  |
T Consensus       203 ~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~-~~~~dg~--i  275 (342)
T 1yfq_A          203 PKEQEGYACSSI-DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS---PRHKFLY-TAGSDGI--I  275 (342)
T ss_dssp             SGGGCEEEEEET-TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC---TTTCCEE-EEETTSC--E
T ss_pred             CCCCCEEEEEec-CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc---CCCCEEE-EecCCce--E
Confidence            9 9986555555 577777766654     12223332221100000000001122333   3666554 4445554  5


Q ss_pred             EEEeCCCCce-eecccC-CcceEeeeecCCEEEEEE
Q 006979          384 GILDDFGHSL-SLLDIP-FTDIDNITLGNDCLFVEG  417 (623)
Q Consensus       384 ~~~d~~~~~~-~~lt~~-~~~v~~~~~~~~~~~~~~  417 (623)
                      +++|+.+++. ..+... ...+..+.+++..++..+
T Consensus       276 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s  311 (342)
T 1yfq_A          276 SCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             EEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred             EEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEe
Confidence            5567776654 344433 344554454555444433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.60  E-value=6.2e-06  Score=83.44  Aligned_cols=234  Identities=13%  Similarity=0.058  Sum_probs=139.5

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .|+|+.  ...|.++++++.......+...    ........|++.++.|+++....        ..|++++++++... 
T Consensus         6 ~ll~~~--~~~I~~i~l~~~~~~~~~~~~~----~~~~~~ld~d~~~~~lyw~D~~~--------~~I~r~~~~g~~~~-   70 (318)
T 3sov_A            6 LLLYAN--RRDLRLVDATNGKENATIVVGG----LEDAAAVDFVFSHGLIYWSDVSE--------EAIKRTEFNKTESV-   70 (318)
T ss_dssp             EEEEEC--EEEEEEEETTCTTSCCEEEEEE----EEEEEEEEEEGGGTEEEEEETTT--------TEEEEEETTSSSCC-
T ss_pred             EEEEEc--cCeEEEEECCCCceEEEEEecC----CCccEEEEEEeCCCEEEEEECCC--------CcEEEEEccCCCce-
Confidence            467763  4569999998651112222211    12334567999888888764422        67999999886410 


Q ss_pred             ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~  315 (623)
                      ...+..+.....+.++.+.++.|+|....       ...|.++++++..   ...+.....    ..+...+..|++..+
T Consensus        71 ~~~~~~~l~~p~glavd~~~g~ly~~d~~-------~~~I~~~~~dG~~---~~~l~~~~~----~~P~giavdp~~g~l  136 (318)
T 3sov_A           71 QNVVVSGLLSPDGLACDWLGEKLYWTDSE-------TNRIEVSNLDGSL---RKVLFWQEL----DQPRAIALDPSSGFM  136 (318)
T ss_dssp             CEEEEECCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETTSCS---CEEEECSSC----SSEEEEEEEGGGTEE
T ss_pred             EEEEcCCCCCccEEEEEcCCCeEEEEECC-------CCEEEEEECCCCc---EEEEEeCCC----CCccEEEEeCCCCEE
Confidence            12333333444567788888889988632       3469999987652   222332222    344567778765544


Q ss_pred             EEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceee
Q 006979          316 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL  395 (623)
Q Consensus       316 ~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~  395 (623)
                      |.++. .....|+++++++...+.+....  +..|      +.+.+.   ++++.|||+.  .+..+|+++|++++..+.
T Consensus       137 y~td~-~~~~~I~r~~~dG~~~~~~~~~~--l~~P------nglavd---~~~~~lY~aD--~~~~~I~~~d~dG~~~~~  202 (318)
T 3sov_A          137 YWTDW-GEVPKIERAGMDGSSRFIIINSE--IYWP------NGLTLD---YEEQKLYWAD--AKLNFIHKSNLDGTNRQA  202 (318)
T ss_dssp             EEEEC-SSSCEEEEEETTSCSCEEEECSS--CSCE------EEEEEE---TTTTEEEEEE--TTTTEEEEEETTSCSCEE
T ss_pred             EEEec-CCCCEEEEEEcCCCCeEEEEECC--CCCc------cEEEEe---ccCCEEEEEE--CCCCEEEEEcCCCCceEE
Confidence            45564 23568999998876555554321  1111      233443   2688899986  455689999998876665


Q ss_pred             ccc-CCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          396 LDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       396 lt~-~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      +.. ....-.++..+++.+|++-.   ....|++++..+|+
T Consensus       203 ~~~~~~~~P~glav~~~~lywtd~---~~~~V~~~~~~~G~  240 (318)
T 3sov_A          203 VVKGSLPHPFALTLFEDILYWTDW---STHSILACNKYTGE  240 (318)
T ss_dssp             EECSCCSCEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             EecCCCCCceEEEEeCCEEEEEec---CCCeEEEEECCCCC
Confidence            543 22222344556777777632   34578888886665

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.60  E-value=1.2e-05  Score=83.19  Aligned_cols=154  Identities=12%  Similarity=0.045  Sum_probs=91.6

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCC-----ceecCCCCCCC--CeeecceeeC----CCCCE-EEEEEeccCCCCCCceeEE
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSS-----PLPITPDYGEP--LVSYADGIFD----PRFNR-YVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~-----~~~Lt~~~~~~--~~~~~d~~~s----PdG~~-l~~v~~~~~~~~~~~~~~L  223 (623)
                      ..+++...++.|+++++.++ ..     ...+.... ..  ........|+    |+++. |+....+         ..|
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------g~i  150 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITRE-DETKKVIFEKLDLLD-SDMKKHSFWALKWGASNDRLLSHRLVATDVK---------GTT  150 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEEC-TTTCCEEEEEECCSC-TTGGGSCEEEEEEECCC----CEEEEEEETT---------SCE
T ss_pred             cEEEEEcCCCCEEEEEccCC-cccccccceeecccc-cccCCCcEEEEEEeeccCCCCceEEEEEeCC---------CcE
Confidence            56666667888999998876 22     33443310 00  1446678899    99998 6665443         457


Q ss_pred             EEEEcCC------CCcccce-----ecc-------cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc
Q 006979          224 VAIALNG------QNIQEPK-----VLV-------SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD  285 (623)
Q Consensus       224 ~~idl~~------g~~~~~~-----~l~-------~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~  285 (623)
                      +++|+.+      ++.  +.     .+.       ..........|+||| .|+... .       ...|.++|+..+. 
T Consensus       151 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~-------dg~i~i~d~~~~~-  218 (397)
T 1sq9_A          151 YIWKFHPFADESNSLT--LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF-N-------NGTVQISELSTLR-  218 (397)
T ss_dssp             EEEEEESSSSHHHHTT--TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC-T-------TSEEEEEETTTTE-
T ss_pred             EEEeCCccccccccce--eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe-C-------CCcEEEEECCCCc-
Confidence            7778776      431  22     331       123445667899999 666543 2       3358999988762 


Q ss_pred             eeeeEEEcC---C---CCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE
Q 006979          286 VYKRVCVAG---F---DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       286 ~~~~~~~~~---~---~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~  338 (623)
                        ....+..   .   .    ..+..+.|+|||++++......+...|..+|..+++..
T Consensus       219 --~~~~~~~~~~h~~~~----~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~  271 (397)
T 1sq9_A          219 --PLYNFESQHSMINNS----NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI  271 (397)
T ss_dssp             --EEEEEECCC---CCC----CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             --eeEEEeccccccccC----CccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence              3333443   2   3    45678899999995555443133367888888777643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.59  E-value=1.1e-05  Score=80.71  Aligned_cols=256  Identities=10%  Similarity=0.024  Sum_probs=138.7

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ...+..+.++| +..+. .-.   .+|...||.....   .....+..        ++....+..++++ ..+++...++
T Consensus        13 ~~~V~~~~fsp~~~~l~-s~~---~dg~v~lWd~~~~---~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~s~d~   77 (304)
T 2ynn_A           13 SDRVKGIDFHPTEPWVL-TTL---YSGRVELWNYETQ---VEVRSIQV--------TETPVRAGKFIARKNWIIVGSDDF   77 (304)
T ss_dssp             CSCEEEEEECSSSSEEE-EEE---TTSEEEEEETTTT---EEEEEEEC--------CSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             CCceEEEEECCCCCEEE-EEc---CCCcEEEEECCCC---ceeEEeec--------cCCcEEEEEEeCCCCEEEEECCCC
Confidence            34567889998 54443 332   2577777765432   21111110        1111233344444 4556666788


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce-ecccCCC
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGSD  244 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~-~l~~~~~  244 (623)
                      .|.++|+.++ .....+...    ........|+|++++|+....|         ..+.+.|+.++..  .. .+.....
T Consensus        78 ~i~vwd~~~~-~~~~~~~~h----~~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~~~~~--~~~~~~~h~~  141 (304)
T 2ynn_A           78 RIRVFNYNTG-EKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENNWA--LEQTFEGHEH  141 (304)
T ss_dssp             EEEEEETTTC-CEEEEEECC----SSCEEEEEECSSSSEEEEEETT---------SCEEEEEGGGTTE--EEEEECCCCS
T ss_pred             EEEEEECCCC-cEEEEEeCC----CCcEEEEEEcCCCCEEEEECCC---------CeEEEEECCCCcc--hhhhhcccCC
Confidence            8999999876 223344332    3446678899999988765554         4577888877631  22 2333345


Q ss_pred             cccceeeCC-CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC--CCcEEEEEeCC
Q 006979          245 FYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDRK  321 (623)
Q Consensus       245 ~~~~p~wSP-DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~--DG~l~~~~~~~  321 (623)
                      .+...+|+| |++.|+-...|        ..|.+.|+.....  ...+..+..    ..+....|+|  |+++++.... 
T Consensus       142 ~v~~v~~~p~~~~~l~sgs~D--------~~v~iwd~~~~~~--~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~s~-  206 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFASGCLD--------RTVKVWSLGQSTP--NFTLTTGQE----RGVNYVDYYPLPDKPYMITASD-  206 (304)
T ss_dssp             CEEEEEECTTCTTEEEEEETT--------SEEEEEETTCSSC--SEEEECCCT----TCEEEEEECCSTTCCEEEEEET-
T ss_pred             cEEEEEECCCCCCEEEEEeCC--------CeEEEEECCCCCc--cceeccCCc----CcEEEEEEEEcCCCCEEEEEcC-
Confidence            566778999 67777655533        2488888866532  222333332    3344566765  6665555444 


Q ss_pred             CCeeeEEEEecCCCeEE-EEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce-eecccC
Q 006979          322 NGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIP  399 (623)
Q Consensus       322 ~g~~~L~~~d~~~~~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~-~~lt~~  399 (623)
                      ++.  |..+|..+++.. .+......+...         .|.   |+++ ++++...+|.-+||  |..+++. +.+...
T Consensus       207 D~~--i~iWd~~~~~~~~~~~~h~~~v~~~---------~~~---p~~~-~l~s~s~Dg~i~iW--d~~~~~~~~~~~~~  269 (304)
T 2ynn_A          207 DLT--IKIWDYQTKSCVATLEGHMSNVSFA---------VFH---PTLP-IIISGSEDGTLKIW--NSSTYKVEKTLNVG  269 (304)
T ss_dssp             TSE--EEEEETTTTEEEEEEECCSSCEEEE---------EEC---SSSS-EEEEEETTSCEEEE--ETTTCCEEEEECCS
T ss_pred             CCe--EEEEeCCCCccceeeCCCCCCEEEE---------EEC---CCCC-EEEEEcCCCeEEEE--ECCCCceeeeccCC
Confidence            454  555677776543 332222222222         222   2555 55566667765555  7666654 344443


Q ss_pred             CcceEee
Q 006979          400 FTDIDNI  406 (623)
Q Consensus       400 ~~~v~~~  406 (623)
                      ...+..+
T Consensus       270 ~~~~~~~  276 (304)
T 2ynn_A          270 LERSWCI  276 (304)
T ss_dssp             SSSEEEE
T ss_pred             CccEEEE
Confidence            3334333

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.57  E-value=3.3e-06  Score=85.49  Aligned_cols=194  Identities=12%  Similarity=0.122  Sum_probs=120.7

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      .+.|||++...++|++++++++......+...    .......++++.++.|+++....        ..|.++++++.. 
T Consensus        46 ~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~----l~~p~glavd~~~g~ly~~d~~~--------~~I~~~~~dG~~-  112 (318)
T 3sov_A           46 HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----LLSPDGLACDWLGEKLYWTDSET--------NRIEVSNLDGSL-  112 (318)
T ss_dssp             GTEEEEEETTTTEEEEEETTSSSCCCEEEEEC----CSCCCEEEEETTTTEEEEEETTT--------TEEEEEETTSCS-
T ss_pred             CCEEEEEECCCCcEEEEEccCCCceEEEEcCC----CCCccEEEEEcCCCeEEEEECCC--------CEEEEEECCCCc-
Confidence            46899999888899999998651111222221    11234577888777887764322        579999998765 


Q ss_pred             ccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          234 QEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       234 ~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                        .+.+. .+.......++.|++.+|+|..+..      ...|+++++++..   ...++...-    ..+..++|++++
T Consensus       113 --~~~l~~~~~~~P~giavdp~~g~ly~td~~~------~~~I~r~~~dG~~---~~~~~~~~l----~~Pnglavd~~~  177 (318)
T 3sov_A          113 --RKVLFWQELDQPRAIALDPSSGFMYWTDWGE------VPKIERAGMDGSS---RFIIINSEI----YWPNGLTLDYEE  177 (318)
T ss_dssp             --CEEEECSSCSSEEEEEEEGGGTEEEEEECSS------SCEEEEEETTSCS---CEEEECSSC----SCEEEEEEETTT
T ss_pred             --EEEEEeCCCCCccEEEEeCCCCEEEEEecCC------CCEEEEEEcCCCC---eEEEEECCC----CCccEEEEeccC
Confidence              44443 3333445567899888999987542      3569999988652   223332222    345678999977


Q ss_pred             cEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (623)
Q Consensus       313 ~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~  392 (623)
                      +.+|.++.  +...|+++|.++...+.+...  ....|      ..+.+     +++.+||+.  .+...|++++..+|+
T Consensus       178 ~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~--~~~~P------~glav-----~~~~lywtd--~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          178 QKLYWADA--KLNFIHKSNLDGTNRQAVVKG--SLPHP------FALTL-----FEDILYWTD--WSTHSILACNKYTGE  240 (318)
T ss_dssp             TEEEEEET--TTTEEEEEETTSCSCEEEECS--CCSCE------EEEEE-----ETTEEEEEE--TTTTEEEEEETTTCC
T ss_pred             CEEEEEEC--CCCEEEEEcCCCCceEEEecC--CCCCc------eEEEE-----eCCEEEEEe--cCCCeEEEEECCCCC
Confidence            74445565  456899999987665555432  11211      12333     456788874  345578888875443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.56  E-value=9.7e-06  Score=83.02  Aligned_cols=246  Identities=10%  Similarity=0.033  Sum_probs=137.9

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC---CEEEEEeCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYK  163 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~---d~l~f~~~~  163 (623)
                      ...+..+.|+| +..+. .-..   +|...+|.....++ +....+..        |...+.+..+++   +.++++...
T Consensus        11 ~~~v~~~~~s~~~~~l~-~~~~---dg~i~iw~~~~~~~-~~~~~~~~--------h~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A           11 NELIHDAVLDYYGKRLA-TCSS---DKTIKIFEVEGETH-KLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             CCCEEEEEECSSSSEEE-EEET---TSCEEEEEEETTEE-EEEEEECC--------CSSCEEEEEECCGGGCSEEEEEET
T ss_pred             cccEEEEEEcCCCCEEE-EEEC---CCcEEEEecCCCcc-eeeeEecC--------CCCcEEEEEeCCCCCCCEEEEecc
Confidence            34566788888 54443 3322   47777776643211 11111111        111233455542   356666667


Q ss_pred             CCcEEEEeCCCCCCC---ceecCCCCCCCCeeecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccee
Q 006979          164 DQRLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV  238 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~---~~~Lt~~~~~~~~~~~d~~~sPd--G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~  238 (623)
                      ++.|.++|+.++  .   ...+...    ........|+|+  ++.++....+         ..|.++|+.++.......
T Consensus        78 dg~v~iwd~~~~--~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~  142 (379)
T 3jrp_A           78 DGKVLIWKEENG--RWSQIAVHAVH----SASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKENGTTSPII  142 (379)
T ss_dssp             TSCEEEEEEETT--EEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCTTSCCCEEE
T ss_pred             CCEEEEEEcCCC--ceeEeeeecCC----CcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCCCCceeeEE
Confidence            888999998865  3   1222221    344667889999  8888776554         568888988764211233


Q ss_pred             cccCCCcccceeeCC-------------CCCEEEEEEecCCCCCCCceEEEEEEecCCCce-eeeEEEcCCCCCccccCc
Q 006979          239 LVSGSDFYAFPRMDP-------------RGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       239 l~~~~~~~~~p~wSP-------------DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~  304 (623)
                      +...........|+|             |++.|+....+.        .|+++|+..+... .....+.+..    ..+.
T Consensus       143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~h~----~~v~  210 (379)
T 3jrp_A          143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN--------LVKIWKYNSDAQTYVLESTLEGHS----DWVR  210 (379)
T ss_dssp             EECCTTCEEEEEECCCC----------CTTCEEEEEETTS--------CEEEEEEETTTTEEEEEEEECCCS----SCEE
T ss_pred             ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC--------eEEEEEecCCCcceeeEEEEeccc----CcEe
Confidence            334445566788999             799888766332        3888888765331 1222334433    4567


Q ss_pred             CceeCCC---CcEEEEEeCCCCeeeEEEEecCCCe---EEEEee---cccccccccccccCcceeEEeecCCCCEEEEEE
Q 006979          305 EPKWSSK---GELFFVTDRKNGFWNLHKWIESNNE---VLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY  375 (623)
Q Consensus       305 ~~~ws~D---G~l~~~~~~~~g~~~L~~~d~~~~~---~~~l~~---~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~  375 (623)
                      .+.|+||   +++++.... +|.-.||  |..+++   ...+..   ....+....|+            |+++.|+...
T Consensus       211 ~~~~sp~~~~~~~l~s~~~-dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~s------------~~g~~l~~~~  275 (379)
T 3jrp_A          211 DVAWSPTVLLRSYLASVSQ-DRTCIIW--TQDNEQGPWKKTLLKEEKFPDVLWRASWS------------LSGNVLALSG  275 (379)
T ss_dssp             EEEECCCCSSSEEEEEEET-TSCEEEE--EESSTTSCCEEEESSSSCCSSCEEEEEEC------------SSSCCEEEEE
T ss_pred             EEEECCCCCCCCeEEEEeC-CCEEEEE--eCCCCCccceeeeeccccCCCcEEEEEEc------------CCCCEEEEec
Confidence            8999999   775555554 4655555  444442   222221   11122222333            2666555444


Q ss_pred             EECCeEEEEEEeCC
Q 006979          376 RQNGRSYLGILDDF  389 (623)
Q Consensus       376 ~~~g~~~L~~~d~~  389 (623)
                       .+|.-++|.++..
T Consensus       276 -~dg~i~iw~~~~~  288 (379)
T 3jrp_A          276 -GDNKVTLWKENLE  288 (379)
T ss_dssp             -SSSSEEEEEEEET
T ss_pred             -CCCcEEEEeCCCC
Confidence             5788888877643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.55  E-value=5.8e-07  Score=92.74  Aligned_cols=159  Identities=12%  Similarity=0.045  Sum_probs=88.3

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.+++++ .++++...++.|.++++.++  ..+.+..-. ..........|+|+|++|+....+         ..|.+
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d---------~~v~v   81 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQVELYEQDGN--GWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQD---------RNAYV   81 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCBCEEEEETT--EEEECCCBC-CCSSCEEEEEECTTTCCEEEEETT---------SSEEE
T ss_pred             EEEEEECCCCCEEEEecCCCEEEEEEccCC--ceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCC---------CeEEE
Confidence            344555554 44555556777888888754  212222210 113446678899999988876654         34777


Q ss_pred             EEcCCCC-cccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcC-CCCCccccC
Q 006979          226 IALNGQN-IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDPTIVESP  303 (623)
Q Consensus       226 idl~~g~-~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~-~~~~~~~~~  303 (623)
                      +|+.++. ......+......+....|+|||++|+....+.        .|.++|++.+........+.+ ..    ..+
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~i~iwd~~~~~~~~~~~~~~~~h~----~~v  149 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR--------VISVCYFEQENDWWVSKHLKRPLR----STI  149 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS--------CEEECCC-----CCCCEEECSSCC----SCE
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC--------eEEEEEECCcccceeeeEeecccC----CCe
Confidence            7877654 111333444444566788999999998776443        277778776531112334444 33    567


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEE
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKW  330 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~  330 (623)
                      ..+.|+|||++++.... ++.-.+|-+
T Consensus       150 ~~~~~~~~~~~l~~~~~-d~~i~iwd~  175 (377)
T 3dwl_C          150 LSLDWHPNNVLLAAGCA-DRKAYVLSA  175 (377)
T ss_dssp             EEEEECTTSSEEEEEES-SSCEEEEEE
T ss_pred             EEEEEcCCCCEEEEEeC-CCEEEEEEE
Confidence            78999999995555444 455555544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.55  E-value=1e-05  Score=82.52  Aligned_cols=156  Identities=12%  Similarity=0.042  Sum_probs=96.1

Q ss_pred             EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      ..+.++..+++...++.|.++|+.++ .....+...    ........|+|+++.++....+         ..+.++|+.
T Consensus       149 ~~~~~~~~l~s~s~d~~i~~wd~~~~-~~~~~~~~h----~~~v~~~~~~~~~~~l~sg~~d---------~~v~~wd~~  214 (340)
T 1got_B          149 CRFLDDNQIVTSSGDTTCALWDIETG-QQTTTFTGH----TGDVMSLSLAPDTRLFVSGACD---------ASAKLWDVR  214 (340)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETT
T ss_pred             EEECCCCcEEEEECCCcEEEEECCCC-cEEEEEcCC----CCceEEEEECCCCCEEEEEeCC---------CcEEEEECC
Confidence            33444433455557888999999876 223334322    2346678899999977765544         458888998


Q ss_pred             CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws  309 (623)
                      ++..  ...+......+...+|+|||++|+-...|.        .|.++|+..+.   ....+....  ....+....|+
T Consensus       215 ~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~--------~v~iwd~~~~~---~~~~~~~~~--~~~~v~~~~~s  279 (340)
T 1got_B          215 EGMC--RQTFTGHESDINAICFFPNGNAFATGSDDA--------TCRLFDLRADQ---ELMTYSHDN--IICGITSVSFS  279 (340)
T ss_dssp             TCSE--EEEECCCSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTTE---EEEEECCTT--CCSCEEEEEEC
T ss_pred             CCee--EEEEcCCcCCEEEEEEcCCCCEEEEEcCCC--------cEEEEECCCCc---EEEEEccCC--cccceEEEEEC
Confidence            8762  233443344466678999999888665332        38888987662   222222211  11345678999


Q ss_pred             CCCcEEEEEeCCCCeeeEEEEecCCCeE
Q 006979          310 SKGELFFVTDRKNGFWNLHKWIESNNEV  337 (623)
Q Consensus       310 ~DG~l~~~~~~~~g~~~L~~~d~~~~~~  337 (623)
                      |||++++.... ++.  |..+|..+++.
T Consensus       280 ~~g~~l~~g~~-d~~--i~vwd~~~~~~  304 (340)
T 1got_B          280 KSGRLLLAGYD-DFN--CNVWDALKADR  304 (340)
T ss_dssp             TTSSEEEEEET-TSE--EEEEETTTCCE
T ss_pred             CCCCEEEEECC-CCe--EEEEEcccCcE
Confidence            99996655554 454  55567666553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.55  E-value=1.4e-06  Score=87.44  Aligned_cols=211  Identities=12%  Similarity=0.106  Sum_probs=118.9

Q ss_pred             CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCE
Q 006979          178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGER  257 (623)
Q Consensus       178 ~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~  257 (623)
                      ..++|..+    ......+.|+|+|+.|+++....        ..|++++.+ ++   .+.+...........|+|||+ 
T Consensus        36 ~~~~l~~~----~~~~egp~~~~~g~~l~~~d~~~--------~~i~~~~~~-g~---~~~~~~~~~~~~gl~~d~dG~-   98 (305)
T 3dr2_A           36 RLLTLYDQ----ATWSEGPAWWEAQRTLVWSDLVG--------RRVLGWRED-GT---VDVLLDATAFTNGNAVDAQQR-   98 (305)
T ss_dssp             CCEEEECC----CSSEEEEEEEGGGTEEEEEETTT--------TEEEEEETT-SC---EEEEEESCSCEEEEEECTTSC-
T ss_pred             ceEEEecC----CcCccCCeEeCCCCEEEEEECCC--------CEEEEEeCC-CC---EEEEeCCCCccceeeECCCCC-
Confidence            56666654    22345689999999888875422        569999984 44   455555555566788999998 


Q ss_pred             EEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEe----C----------CCC
Q 006979          258 MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD----R----------KNG  323 (623)
Q Consensus       258 la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~----~----------~~g  323 (623)
                      |+... ..      ...|++++.++.    ...+...........+..+.+++||++++...    .          ..+
T Consensus        99 l~v~~-~~------~~~v~~~~~~g~----~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~  167 (305)
T 3dr2_A           99 LVHCE-HG------RRAITRSDADGQ----AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA  167 (305)
T ss_dssp             EEEEE-TT------TTEEEEECTTSC----EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred             EEEEE-CC------CCEEEEECCCCC----EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence            54443 21      235888887522    22222111100002456789999998776411    0          012


Q ss_pred             eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC---CeEEEEEEeCCCCcee---ec-
Q 006979          324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN---GRSYLGILDDFGHSLS---LL-  396 (623)
Q Consensus       324 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~---g~~~L~~~d~~~~~~~---~l-  396 (623)
                      ...||++|+++++.+.+. ..   ..+      +.+.+.   ++++.||+.....   +..+|++++++++.+.   .+ 
T Consensus       168 ~~~v~~~d~~~g~~~~~~-~~---~~p------~gl~~s---pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~  234 (305)
T 3dr2_A          168 HHSVYRLPPDGSPLQRMA-DL---DHP------NGLAFS---PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA  234 (305)
T ss_dssp             CEEEEEECSSSCCCEEEE-EE---SSE------EEEEEC---TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred             CCeEEEEcCCCCcEEEEe-cC---CCC------cceEEc---CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence            468999999888776664 21   111      123333   3888888776432   1357888887654321   11 


Q ss_pred             ccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          397 DIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       397 t~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      .........+  +.+++ +++..     ...|++++.++..
T Consensus       235 ~~~~~~pdgi~~d~~G~-lwv~~-----~~gv~~~~~~g~~  269 (305)
T 3dr2_A          235 SVPDGLPDGFCVDRGGW-LWSSS-----GTGVCVFDSDGQL  269 (305)
T ss_dssp             CCSSSCCCSEEECTTSC-EEECC-----SSEEEEECTTSCE
T ss_pred             ECCCCCCCeEEECCCCC-EEEec-----CCcEEEECCCCCE
Confidence            1111122233  44454 44432     2358888875543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.55  E-value=2.3e-05  Score=85.60  Aligned_cols=247  Identities=9%  Similarity=-0.025  Sum_probs=135.9

Q ss_pred             eEEEeCC-EEEEEeCCCCcEEEEeCC--CCCCCceecCCCCCCCCeeecceeeC----CCCCEEEEEEeccCCCCCCcee
Q 006979          149 AFRIFGD-TVIFSNYKDQRLYKHSID--SKDSSPLPITPDYGEPLVSYADGIFD----PRFNRYVTVREDRRQDALNSTT  221 (623)
Q Consensus       149 ~~~~s~d-~l~f~~~~~~~l~~~d~~--~g~~~~~~Lt~~~~~~~~~~~d~~~s----PdG~~l~~v~~~~~~~~~~~~~  221 (623)
                      ...+++| +.+|+...++.|+++|+.  ++ .....+..+     ..-....+|    |||++++...+..        +
T Consensus       201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G-----~~P~~ia~s~~~~pDGk~l~v~n~~~--------~  266 (567)
T 1qks_A          201 ISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIG-----SEARSIETSKMEGWEDKYAIAGAYWP--------P  266 (567)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECC-----SEEEEEEECCSTTCTTTEEEEEEEET--------T
T ss_pred             ceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecC-----CCCceeEEccccCCCCCEEEEEEccC--------C
Confidence            3455655 444444567789999995  44 223344432     123457799    7999988876643        5


Q ss_pred             EEEEEEcCCCCcccceecc-cCC-----C-----cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeE
Q 006979          222 EIVAIALNGQNIQEPKVLV-SGS-----D-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV  290 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~-~~~-----~-----~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~  290 (623)
                      .+.++|..+.+.  +..+. .+.     +     .......|+++..+++.. .+      ..+|+++|......+....
T Consensus       267 ~v~ViD~~t~~~--~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-~~------~g~v~~vd~~~~~~~~v~~  337 (567)
T 1qks_A          267 QYVIMDGETLEP--KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-KE------TGKILLVDYTDLNNLKTTE  337 (567)
T ss_dssp             EEEEEETTTCCE--EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-TT------TTEEEEEETTCSSEEEEEE
T ss_pred             eEEEEECCCCcE--EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-cC------CCeEEEEecCCCccceeee
Confidence            688999887762  22222 110     1     122345788887655443 32      4579999987653211122


Q ss_pred             EEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCE
Q 006979          291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL  370 (623)
Q Consensus       291 ~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~  370 (623)
                      +..  .    .......|+|||+.+++++.  +...|..+|..+++.....+-    ++..+.++. ...|.  .|+++.
T Consensus       338 i~~--~----~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~kl~~~i~v----gg~~Phpg~-g~~~~--~p~~g~  402 (567)
T 1qks_A          338 ISA--E----RFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDT----GGQTPHPGR-GANFV--HPTFGP  402 (567)
T ss_dssp             EEC--C----SSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEEC----SSSSBCCTT-CEEEE--ETTTEE
T ss_pred             eec--c----ccccCceECCCCCEEEEEeC--CCCeEEEEECCCCcEEEEEec----cCcCCCCcc-ceeeE--CCCCCc
Confidence            211  1    23456789999996666665  345688899999876544432    011111111 11122  125566


Q ss_pred             EEEEEEECCeEEEEEEeCCCC--------ceeecccC-Ccce-EeeeecCCEEEEEEe-cCC--CCCeEEEEEcCCC
Q 006979          371 IACSYRQNGRSYLGILDDFGH--------SLSLLDIP-FTDI-DNITLGNDCLFVEGA-SGV--EPSSVAKVTLDDH  434 (623)
Q Consensus       371 l~~~~~~~g~~~L~~~d~~~~--------~~~~lt~~-~~~v-~~~~~~~~~~~~~~~-s~~--~~~~ly~~~l~~~  434 (623)
                      ++++. .-|...|.++|.+.+        .++.+... ...+ -...+++.++|+... ++.  ....|.++|+++.
T Consensus       403 v~~t~-~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          403 VWATS-HMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEEE-BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEEeC-CCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            65544 334445778887752        23444432 2211 122677777776542 221  1357889988765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.54  E-value=7e-06  Score=82.17  Aligned_cols=260  Identities=12%  Similarity=0.058  Sum_probs=134.7

Q ss_pred             CCccCceEEcCCCcEEEE-------eecCCCCCceEEEEcCCCCCCCCcccCC-CCCccceeeeecCCceEEEeCC--EE
Q 006979           88 SKRLGGTAVDGHGRLIWL-------ESRPTEAGRGVLVKEPAKAGDEPSDITP-KEYAVRTTAQEYGGGAFRIFGD--TV  157 (623)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l-------~~~~~e~g~~~l~~~~~~~gg~~~~l~p-~~~~~r~~~~~~g~~~~~~s~d--~l  157 (623)
                      -..++.+.|++++.+|+.       +..   ++  .|++++..++ +.+.+.. ....     +........++++  .+
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~---~~--~i~~~d~~~g-~~~~~~~~~~~~-----~~~~~~~i~~~~~~g~l   85 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKP---AG--EILRIDLKTG-KKTVICKPEVNG-----YGGIPAGCQCDRDANQL   85 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEE---CC--EEEEECTTTC-CEEEEECCEETT-----EECCEEEEEECSSSSEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCC---CC--EEEEEeCCCC-cEEEEEecccCC-----CCCCCceEEEecCCCcE
Confidence            345678899886688887       332   23  3666665433 3322221 0000     0011223445544  56


Q ss_pred             EEEeCCCCcEEEEeCCCCCCCceec-CCCC-CCCCeeecceeeCCCCCEEEEEEeccC------CCCCCceeEEEEEEcC
Q 006979          158 IFSNYKDQRLYKHSIDSKDSSPLPI-TPDY-GEPLVSYADGIFDPRFNRYVTVREDRR------QDALNSTTEIVAIALN  229 (623)
Q Consensus       158 ~f~~~~~~~l~~~d~~~g~~~~~~L-t~~~-~~~~~~~~d~~~sPdG~~l~~v~~~~~------~~~~~~~~~L~~idl~  229 (623)
                      ++... .+.|++++.+ +  ..+.+ .... ..+.....+..++|+|+.++....+..      .........|++++.+
T Consensus        86 ~v~~~-~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (314)
T 1pjx_A           86 FVADM-RLGLLVVQTD-G--TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD  161 (314)
T ss_dssp             EEEET-TTEEEEEETT-S--CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred             EEEEC-CCCEEEEeCC-C--CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence            66654 3369999988 6  55555 3221 111234567889999975544322100      0001123679999987


Q ss_pred             CCCcccceecccCCCcccceeeC----CCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          230 GQNIQEPKVLVSGSDFYAFPRMD----PRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~~~~p~wS----PDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                       ++   .+.+...........|+    |||+.|++....       ...|++++++..+.+.....+..........+..
T Consensus       162 -g~---~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~-------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  230 (314)
T 1pjx_A          162 -GQ---MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP-------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             -SC---EEEEEEEESSEEEEEEEECTTSCEEEEEEEETT-------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             -CC---EEEeccCCCCcceEEEecccCCCCCEEEEEECC-------CCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence             55   44443333334556799    999888766522       3458898887333222222222211000012456


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      +.+++||++++....   ...|+++|+++++. ..+.......         ..+.+.   ++++.||++...+  ..|+
T Consensus       231 i~~d~~G~l~v~~~~---~~~i~~~d~~~g~~~~~~~~~~~~~---------~~i~~~---~dg~~l~v~~~~~--~~l~  293 (314)
T 1pjx_A          231 MDFDEDNNLLVANWG---SSHIEVFGPDGGQPKMRIRCPFEKP---------SNLHFK---PQTKTIFVTEHEN--NAVW  293 (314)
T ss_dssp             EEEBTTCCEEEEEET---TTEEEEECTTCBSCSEEEECSSSCE---------EEEEEC---TTSSEEEEEETTT--TEEE
T ss_pred             eEECCCCCEEEEEcC---CCEEEEEcCCCCcEeEEEeCCCCCc---------eeEEEC---CCCCEEEEEeCCC--CeEE
Confidence            788999976554432   23688899885543 2232110111         122332   3666677766433  3577


Q ss_pred             EEeCCC
Q 006979          385 ILDDFG  390 (623)
Q Consensus       385 ~~d~~~  390 (623)
                      +++++.
T Consensus       294 ~~~~~~  299 (314)
T 1pjx_A          294 KFEWQR  299 (314)
T ss_dssp             EEECSS
T ss_pred             EEeCCC
Confidence            888764

>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae}

Probab=98.54  E-value=1.5e-08  Score=98.21  Aligned_cols=117  Identities=16%  Similarity=0.055  Sum_probs=71.8

Q ss_pred             CCCCEEEEecCCCCCcccC--cCCHHhHHHHcCceEEEEECCCCCCC-------Cchh-HH---H-hhccCC----ccch
Q 006979          493 EKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTG-------YGRE-FR---E-RLLGRW----GIVD  554 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~--~~~~~~~~~a~~G~~v~~~d~rGs~~-------~g~~-~~---~-~~~~~~----g~~~  554 (623)
                      .+.|.||++||........  .+....+.|.++||.|+.+|+++...       ++.. +.   . .....|    ...+
T Consensus         3 ~~~~~vl~lHG~g~~~~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~~~~~~~   82 (243)
T 1ycd_A            3 VQIPKLLFLHGFLQNGKVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYHSEISH   82 (243)
T ss_dssp             CCCCEEEEECCTTCCHHHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSCCCSSGG
T ss_pred             CcCceEEEeCCCCccHHHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcccccCCCCcc
Confidence            3468999999984433211  12245667777899999999993211       0000 00   0 000111    1123


Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCC------CceeEEEecccCCC
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFR------DTFKAGASLYGVSI  609 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~------~~f~a~v~~~g~~d  609 (623)
                      ..|+.+++++|.+....+..+|+|+|+|+||.+++.++ .++      ..+++++..+|...
T Consensus        83 ~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~  144 (243)
T 1ycd_A           83 ELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSF  144 (243)
T ss_dssp             GCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCC
T ss_pred             hhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCC
Confidence            45677777777654333457899999999999999988 432      35778888877653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.54  E-value=1.1e-05  Score=83.45  Aligned_cols=154  Identities=10%  Similarity=0.057  Sum_probs=98.0

Q ss_pred             CceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCC-CCCEEEEEEeccCCCCCCceeEE
Q 006979          147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       147 ~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      +.+..++++  .++++...++.|.++|+.++ .....+...  ..........|+| +++.|+....+         ..|
T Consensus        76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~d---------~~i  143 (383)
T 3ei3_B           76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQGM--GPGDAITGMKFNQFNTNQLFVSSIR---------GAT  143 (383)
T ss_dssp             EEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCEEEECCC--STTCBEEEEEEETTEEEEEEEEETT---------TEE
T ss_pred             EEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccceeeecC--CcCCceeEEEeCCCCCCEEEEEeCC---------CEE
Confidence            345556655  36666667888999999876 223333311  0134567788999 56666555443         568


Q ss_pred             EEEEcCCCCcccceecccCC---CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          224 VAIALNGQNIQEPKVLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~---~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      .++|+.+..   ...+....   ..+....|+|||+.|+....+        ..|+++|+.+.    ....+.+..    
T Consensus       144 ~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~----~~~~~~~h~----  204 (383)
T 3ei3_B          144 TLRDFSGSV---IQVFAKTDSWDYWYCCVDVSVSRQMLATGDST--------GRLLLLGLDGH----EIFKEKLHK----  204 (383)
T ss_dssp             EEEETTSCE---EEEEECCCCSSCCEEEEEEETTTTEEEEEETT--------SEEEEEETTSC----EEEEEECSS----
T ss_pred             EEEECCCCc---eEEEeccCCCCCCeEEEEECCCCCEEEEECCC--------CCEEEEECCCC----EEEEeccCC----
Confidence            888998765   44443332   345567899999988766532        35888898533    333444444    


Q ss_pred             ccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCC
Q 006979          301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       301 ~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~  334 (623)
                      ..+..+.|+|+++ +++.... ++.  |..+|+.+
T Consensus       205 ~~v~~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~  236 (383)
T 3ei3_B          205 AKVTHAEFNPRCDWLMATSSV-DAT--VKLWDLRN  236 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEET-TSE--EEEEEGGG
T ss_pred             CcEEEEEECCCCCCEEEEEeC-CCE--EEEEeCCC
Confidence            4677899999998 7776665 454  45556654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.53  E-value=3.9e-06  Score=86.68  Aligned_cols=160  Identities=11%  Similarity=-0.027  Sum_probs=97.7

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.++++| .++.+. .++.+.+++..++ ......+..  .....+...+|+|||+.++....+....     ..++.
T Consensus       179 V~~v~fspdg~~l~s~-s~~~~~~~~~~~~-~~~~~~~~~--~~~~~v~~v~fspdg~~l~~~s~d~~~~-----~~i~~  249 (365)
T 4h5i_A          179 VKDLHFSTDGKVVAYI-TGSSLEVISTVTG-SCIARKTDF--DKNWSLSKINFIADDTVLIAASLKKGKG-----IVLTK  249 (365)
T ss_dssp             CCEEEECTTSSEEEEE-CSSCEEEEETTTC-CEEEEECCC--CTTEEEEEEEEEETTEEEEEEEESSSCC-----EEEEE
T ss_pred             eEEEEEccCCceEEec-cceeEEEEEeccC-cceeeeecC--CCCCCEEEEEEcCCCCEEEEEecCCcce-----eEEee
Confidence            456677776 344443 3445777877665 122222221  1235567788999999988877654322     45777


Q ss_pred             EEcCCCCcc--cceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeE-EEcCCCCCcccc
Q 006979          226 IALNGQNIQ--EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV-CVAGFDPTIVES  302 (623)
Q Consensus       226 idl~~g~~~--~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~-~~~~~~~~~~~~  302 (623)
                      +++..+...  ....+......+...+|||||++||....|.        .|.++|+.++.   ... ++.+..    ..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~--------~V~iwd~~~~~---~~~~~~~gH~----~~  314 (365)
T 4h5i_A          250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN--------SIALVKLKDLS---MSKIFKQAHS----FA  314 (365)
T ss_dssp             EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS--------CEEEEETTTTE---EEEEETTSSS----SC
T ss_pred             cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC--------EEEEEECCCCc---EEEEecCccc----CC
Confidence            777655310  0122333334456678999999998776443        28888988762   222 234444    56


Q ss_pred             CcCceeCCCCcEEEEEeCCCCeeeEEEEe
Q 006979          303 PTEPKWSSKGELFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       303 ~~~~~ws~DG~l~~~~~~~~g~~~L~~~d  331 (623)
                      +...+|+|||+++..... ++.-+||.+.
T Consensus       315 V~~v~fSpdg~~laS~S~-D~tvrvw~ip  342 (365)
T 4h5i_A          315 ITEVTISPDSTYVASVSA-ANTIHIIKLP  342 (365)
T ss_dssp             EEEEEECTTSCEEEEEET-TSEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEeC-CCeEEEEEcC
Confidence            788999999995555444 5777777654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.53  E-value=2.1e-05  Score=82.51  Aligned_cols=209  Identities=11%  Similarity=0.045  Sum_probs=117.6

Q ss_pred             EEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          150 FRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       150 ~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      .+++++ .|++++..++.|+++|++++  ..+.+...    ...-. +.|+|+|+.|+++..+..       ..|++++.
T Consensus       136 la~d~~g~lyv~d~~~~~I~~id~~~g--~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~~-------~~I~~~d~  201 (409)
T 3hrp_A          136 IAAVGNNTVLAYQRDDPRVRLISVDDN--KVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEGT-------HTVYVYMK  201 (409)
T ss_dssp             EEECSTTEEEEEETTTTEEEEEETTTT--EEEEEEET----CCBCB-CEECTTSSEEEEEBSSTT-------CEEEEEEG
T ss_pred             EEEeCCCCEEEEecCCCcEEEEECCCC--EEEEeecc----CCCCc-eeEecCCCcEEEEecCCC-------ceEEEEEc
Confidence            445444 78888877788999999876  44444332    11122 889999998776544221       37999999


Q ss_pred             CCCCcccceec----ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE----cCCCCCcc
Q 006979          229 NGQNIQEPKVL----VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV----AGFDPTIV  300 (623)
Q Consensus       229 ~~g~~~~~~~l----~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~----~~~~~~~~  300 (623)
                      +++..  .+.+    ..........+++|++.+|++.  +.      ...|++++.+++.    ..++    ......  
T Consensus       202 ~~~~~--~~~~g~~~~~~~~~p~~iav~p~~g~lyv~--d~------~~~I~~~d~~~~~----~~~~~~~~~~g~~~--  265 (409)
T 3hrp_A          202 ASGWA--PTRIGQLGSTFSGKIGAVALDETEEWLYFV--DS------NKNFGRFNVKTQE----VTLIKQLELSGSLG--  265 (409)
T ss_dssp             GGTTC--EEEEEECCTTSCSCCCBCEECTTSSEEEEE--CT------TCEEEEEETTTCC----EEEEEECCCCSCCC--
T ss_pred             CCCce--eEEeeeccchhcCCcEEEEEeCCCCeEEEE--EC------CCcEEEEECCCCC----EEEEecccccCCCC--
Confidence            87651  2233    2122334556799976778774  32      2369999987662    2222    111101  


Q ss_pred             ccCc-CceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc--ccccc-c---cccccCcceeEEeecCCCCEEEE
Q 006979          301 ESPT-EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSR-P---LWVFGINSYEIIQSHGEKNLIAC  373 (623)
Q Consensus       301 ~~~~-~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~--~~~~~-~---~w~~~~~~~~~l~~s~~~~~l~~  373 (623)
                      ..+. .+.|+|++..+|+++.  +...|+++++++. ...+....  ..... +   .-......+.+.   ++++ ||+
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~--~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d---~dG~-lyv  338 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQ--NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVD---EDGN-FYI  338 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEET--TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC---TTCC-EEE
T ss_pred             CCccccEEEeCCCCEEEEEeC--CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe---CCCC-EEE
Confidence            1112 7889996554445665  4457999988654 33333211  00000 0   000111234443   2554 666


Q ss_pred             EEEEC-CeEEEEEEeCCCCceeecc
Q 006979          374 SYRQN-GRSYLGILDDFGHSLSLLD  397 (623)
Q Consensus       374 ~~~~~-g~~~L~~~d~~~~~~~~lt  397 (623)
                      +.  . +..+|.++++.++.+..+.
T Consensus       339 ad--~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          339 VD--GFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             EE--TTTTCEEEEEETTTTEEEEEE
T ss_pred             Ee--CCCCCEEEEEECCCCEEEEEe
Confidence            54  4 5567888997677766554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.53  E-value=1.4e-05  Score=81.18  Aligned_cols=151  Identities=11%  Similarity=0.044  Sum_probs=91.6

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeeccee----eCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGI----FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~----~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g  231 (623)
                      ..+++...++.|.++|+.++......+....+..........    |+|+++.++....+         ..|.++|+.++
T Consensus       130 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~  200 (357)
T 3i2n_A          130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN---------GDIKLFDLRNM  200 (357)
T ss_dssp             CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---------SEEEEEETTTT
T ss_pred             cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---------CeEEEEECccC
Confidence            355566678889999998761123444332111111233333    88999988776543         56999999988


Q ss_pred             CcccceecccCCCcccceeeCC---CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeE--EEcCCCCCccccCcCc
Q 006979          232 NIQEPKVLVSGSDFYAFPRMDP---RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV--CVAGFDPTIVESPTEP  306 (623)
Q Consensus       232 ~~~~~~~l~~~~~~~~~p~wSP---DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~  306 (623)
                      +   ...............|+|   ||++|+....+        ..|.++|+..+..+....  ...+..    ..+...
T Consensus       201 ~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~----~~v~~~  265 (357)
T 3i2n_A          201 A---LRWETNIKNGVCSLEFDRKDISMNKLVATSLE--------GKFHVFDMRTQHPTKGFASVSEKAHK----STVWQV  265 (357)
T ss_dssp             E---EEEEEECSSCEEEEEESCSSSSCCEEEEEEST--------TEEEEEEEEEEETTTEEEEEEEECCS----SCEEEE
T ss_pred             c---eeeecCCCCceEEEEcCCCCCCCCEEEEECCC--------CeEEEEeCcCCCcccceeeeccCCCc----CCEEEE
Confidence            6   433333344556688999   99988876533        347888877653211111  122333    467788


Q ss_pred             eeCCCCc-EEEEEeCCCCeeeEEEEe
Q 006979          307 KWSSKGE-LFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       307 ~ws~DG~-l~~~~~~~~g~~~L~~~d  331 (623)
                      .|+|||+ +++.... +|.-.+|.++
T Consensus       266 ~~~~~~~~~l~~~~~-dg~i~iwd~~  290 (357)
T 3i2n_A          266 RHLPQNRELFLTAGG-AGGLHLWKYE  290 (357)
T ss_dssp             EEETTEEEEEEEEET-TSEEEEEEEE
T ss_pred             EECCCCCcEEEEEeC-CCcEEEeecC
Confidence            9999998 6666655 5666666554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.53  E-value=5.8e-06  Score=84.71  Aligned_cols=241  Identities=10%  Similarity=0.004  Sum_probs=130.7

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCC-CCceecCCCCCCCCeeecceeeCCC--CCEEEEEEeccCCCCCCceeE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKD-SSPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTE  222 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~-~~~~~Lt~~~~~~~~~~~d~~~sPd--G~~l~~v~~~~~~~~~~~~~~  222 (623)
                      +.+.+++++ ..+++...++.|.++++..+. .....+...    ........|+|+  +++|+....+         ..
T Consensus        14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~~d---------g~   80 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GK   80 (379)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SC
T ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC----CCcEEEEEeCCCCCCCEEEEeccC---------CE
Confidence            445566655 455555567888888886320 112233322    334567889987  8888776554         44


Q ss_pred             EEEEEcCCCCcccceecccCCCcccceeeCCC--CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       223 L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPD--G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      |.++|+.+++......+......+....|+|+  |+.|+....+        ..|.++|+...... ....+.+..    
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~-~~~~~~~~~----  147 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD--------GKVSVVEFKENGTT-SPIIIDAHA----  147 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT--------SEEEEEECCTTSCC-CEEEEECCT----
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC--------CcEEEEecCCCCce-eeEEecCCC----
Confidence            77788877742113334434445667889999  9988877633        34888898776321 222333433    


Q ss_pred             ccCcCceeCC-------------CCcEEEEEeCCCCeeeEEEEecCCCe--EEEEe---ecccccccccccccCcceeEE
Q 006979          301 ESPTEPKWSS-------------KGELFFVTDRKNGFWNLHKWIESNNE--VLAIY---SLDAEFSRPLWVFGINSYEII  362 (623)
Q Consensus       301 ~~~~~~~ws~-------------DG~l~~~~~~~~g~~~L~~~d~~~~~--~~~l~---~~~~~~~~~~w~~~~~~~~~l  362 (623)
                      ..+..+.|+|             |+++++.... ++.-.+|  |..+++  ...+.   .....+....|.+        
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~h~~~v~~~~~sp--------  216 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDVAWSP--------  216 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEET-TSCEEEE--EEETTTTEEEEEEEECCCSSCEEEEEECC--------
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeC-CCeEEEE--EecCCCcceeeEEEEecccCcEeEEEECC--------
Confidence            4567889999             6775555544 4554554  444332  22221   1222233333332        


Q ss_pred             eecCCC--CEEEEEEEECCeEEEEEEeCCCCc-e-eeccc--CCcceEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 006979          363 QSHGEK--NLIACSYRQNGRSYLGILDDFGHS-L-SLLDI--PFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (623)
Q Consensus       363 ~~s~~~--~~l~~~~~~~g~~~L~~~d~~~~~-~-~~lt~--~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~  432 (623)
                          ++  +.++++...+|.-+||-++..... . ..+..  ....+..+  ++++..++....  .  ..|+.+++.
T Consensus       217 ----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--d--g~i~iw~~~  286 (379)
T 3jrp_A          217 ----TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--D--NKVTLWKEN  286 (379)
T ss_dssp             ----CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES--S--SSEEEEEEE
T ss_pred             ----CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC--C--CcEEEEeCC
Confidence                53  566666667777666655432211 1 22222  22334444  566665554433  2  334555544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.52  E-value=2.6e-05  Score=82.12  Aligned_cols=119  Identities=10%  Similarity=0.162  Sum_probs=70.8

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC-CCccccee-------cccCCCcccceeeCCCC-CEEEEEE
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQEPKV-------LVSGSDFYAFPRMDPRG-ERMAWIE  262 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~-g~~~~~~~-------l~~~~~~~~~p~wSPDG-~~la~~~  262 (623)
                      ......|+|+|+.|+.. .+         ..|.++|+.. +..  ...       +......+...+|+||| +.|+...
T Consensus       179 ~v~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  246 (447)
T 3dw8_B          179 HINSISINSDYETYLSA-DD---------LRINLWHLEITDRS--FNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS  246 (447)
T ss_dssp             CCCEEEECTTSSEEEEE-CS---------SEEEEEETTEEEEE--EEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEe-CC---------CeEEEEECCCCCce--eeeeecccccccccCcceEEEEECCCCCcEEEEEe
Confidence            45678899999988764 32         5688888873 321  111       22333445678899999 7777665


Q ss_pred             ecCCCCCCCceEEEEEEecCCCce-eeeEEEcCCCCC--------ccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecC
Q 006979          263 WHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPT--------IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (623)
Q Consensus       263 ~~~~~~p~~~~~L~v~d~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~  333 (623)
                      .+.        .|.++|+..+... .....+.+....        ....+..+.|+|||++++....    ..|..+|..
T Consensus       247 ~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~iwd~~  314 (447)
T 3dw8_B          247 SKG--------TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKVWDLN  314 (447)
T ss_dssp             TTS--------CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEEEETT
T ss_pred             CCC--------eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC----CeEEEEeCC
Confidence            332        3888898776310 012344443200        0015678899999985554433    356666765


Q ss_pred             C
Q 006979          334 N  334 (623)
Q Consensus       334 ~  334 (623)
                      .
T Consensus       315 ~  315 (447)
T 3dw8_B          315 M  315 (447)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.52  E-value=8.5e-06  Score=86.07  Aligned_cols=257  Identities=9%  Similarity=0.048  Sum_probs=140.4

Q ss_pred             ccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCC-CccceeeeecCCceEEEeCC-E-EEEEe
Q 006979           86 GASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE-YAVRTTAQEYGGGAFRIFGD-T-VIFSN  161 (623)
Q Consensus        86 ~~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~-~~~r~~~~~~g~~~~~~s~d-~-l~f~~  161 (623)
                      .....+..++++| ++.++..-..   +|...+|......  ......... ....-..|...+.+..++++ . ++++.
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~---dg~V~vwd~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTP---SSDVLVFDYTKHP--SKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECS---SSCEEEEEGGGSC--SSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             cCCCcEEEEEECCCCCcEEEEECC---CCcEEEEECCCcc--cccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3445677888887 4555555432   5777778765320  000000000 00011112233456677665 3 77777


Q ss_pred             CCCCcEEEEeCCCCCCC------ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-c
Q 006979          162 YKDQRLYKHSIDSKDSS------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q  234 (623)
Q Consensus       162 ~~~~~l~~~d~~~g~~~------~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-~  234 (623)
                      ..++.|.++++.++...      ...+...    .....+..|+|++..++++....        ..|.++|+.++.. .
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h----~~~v~~v~~~p~~~~~l~s~~~d--------g~i~i~d~~~~~~~~  268 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGH----TAVVEDVAWHLLHESLFGSVADD--------QKLMIWDTRNNNTSK  268 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCC----SSCEEEEEECSSCTTEEEEEETT--------SEEEEEETTCSCSSS
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCC----CCCEeeeEEeCCCCCEEEEEeCC--------CeEEEEECCCCCCCc
Confidence            78889999999863111      1122221    23466788999544444444322        6799999987621 1


Q ss_pred             cceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-
Q 006979          235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-  313 (623)
Q Consensus       235 ~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-  313 (623)
                      ....+......+....|+|+|++++++...       ...|.++|+.....  ....+....    ..+..+.|+|+|+ 
T Consensus       269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~-------dg~v~vwd~~~~~~--~~~~~~~h~----~~v~~i~~sp~~~~  335 (430)
T 2xyi_A          269 PSHTVDAHTAEVNCLSFNPYSEFILATGSA-------DKTVALWDLRNLKL--KLHSFESHK----DEIFQVQWSPHNET  335 (430)
T ss_dssp             CSEEEECCSSCEEEEEECSSCTTEEEEEET-------TSEEEEEETTCTTS--CSEEEECCS----SCEEEEEECSSCTT
T ss_pred             ceeEeecCCCCeEEEEeCCCCCCEEEEEeC-------CCeEEEEeCCCCCC--CeEEeecCC----CCEEEEEECCCCCC
Confidence            133333333445667899999976655533       23588999886432  233344443    4677899999997 


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCe------------EEEEe---ecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNE------------VLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~------------~~~l~---~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~  378 (623)
                      +++.... ++.-.||  |+....            .+.+.   .....+..         +.|.   |+++.++++...+
T Consensus       336 ~l~s~~~-d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~---------~~~~---p~~~~~l~s~s~d  400 (430)
T 2xyi_A          336 ILASSGT-DRRLHVW--DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD---------FSWN---PNEPWIICSVSED  400 (430)
T ss_dssp             EEEEEET-TSCCEEE--EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE---------EEEC---SSSTTEEEEEETT
T ss_pred             EEEEEeC-CCcEEEE--eCCCCccccCccccccCCcceEEEcCCCCCCceE---------EEEC---CCCCCEEEEEECC
Confidence            6666655 5555555  443311            01111   11111222         2332   3777677777778


Q ss_pred             CeEEEEEEe
Q 006979          379 GRSYLGILD  387 (623)
Q Consensus       379 g~~~L~~~d  387 (623)
                      |.-+||.++
T Consensus       401 g~i~iw~~~  409 (430)
T 2xyi_A          401 NIMQVWQMA  409 (430)
T ss_dssp             SEEEEEEEC
T ss_pred             CCEEEeEcc
Confidence            887887664

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.52  E-value=3.1e-05  Score=78.87  Aligned_cols=150  Identities=13%  Similarity=0.114  Sum_probs=91.4

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+..++++ .++++...++.|.++|+.++ .....+...    ........|+|+|++|+....+         ..|.+
T Consensus        79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~h----~~~v~~v~~sp~~~~l~s~~~d---------~~i~~  144 (343)
T 2xzm_R           79 VSDLALSQENCFAISSSWDKTLRLWDLRTG-TTYKRFVGH----QSEVYSVAFSPDNRQILSAGAE---------REIKL  144 (343)
T ss_dssp             EEEEEECSSTTEEEEEETTSEEEEEETTSS-CEEEEEECC----CSCEEEEEECSSTTEEEEEETT---------SCEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEEEcCC----CCcEEEEEECCCCCEEEEEcCC---------CEEEE
Confidence            445566655 56667777888999999876 223344432    2346678899999988776554         44777


Q ss_pred             EEcCCCCcccceecc---cCCCcccceeeCCCC----------CEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE
Q 006979          226 IALNGQNIQEPKVLV---SGSDFYAFPRMDPRG----------ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV  292 (623)
Q Consensus       226 idl~~g~~~~~~~l~---~~~~~~~~p~wSPDG----------~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~  292 (623)
                      +|+.+..   ...+.   ...+.+...+|+|++          .+|+-...+        ..|.++|....    ....+
T Consensus       145 wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~----~~~~~  209 (343)
T 2xzm_R          145 WNILGEC---KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD--------GRLKVWNTNFQ----IRYTF  209 (343)
T ss_dssp             EESSSCE---EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT--------SEEEEEETTTE----EEEEE
T ss_pred             EeccCCc---eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC--------CEEEEEcCCCc----eeEEE
Confidence            7887543   22222   222345566789887          566655433        24777774321    33334


Q ss_pred             cCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEec
Q 006979          293 AGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (623)
Q Consensus       293 ~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~  332 (623)
                      .+..    ..+....|+|||++++.... ++.-.  .+|+
T Consensus       210 ~~h~----~~v~~~~~s~~g~~l~sgs~-dg~v~--iwd~  242 (343)
T 2xzm_R          210 KAHE----SNVNHLSISPNGKYIATGGK-DKKLL--IWDI  242 (343)
T ss_dssp             ECCS----SCEEEEEECTTSSEEEEEET-TCEEE--EEES
T ss_pred             cCcc----ccceEEEECCCCCEEEEEcC-CCeEE--EEEC
Confidence            4444    45678899999995555544 45444  4555

>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}

Probab=98.51  E-value=3.6e-07  Score=88.95  Aligned_cols=125  Identities=11%  Similarity=0.016  Sum_probs=75.1

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHc--CceEEEEECCCCCCC------CchhHHHh-
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGSTG------YGREFRER-  545 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~--~G~~v~~~d~rGs~~------~g~~~~~~-  545 (623)
                      +...++.|+.        +..++||++||.+  .....+...+++|..  .++.++.|+-+-...      .+..|... 
T Consensus        25 l~y~ii~P~~--------~~~~~VI~LHG~G--~~~~dl~~l~~~l~~~~~~~~~i~P~Ap~~~~~~~~~~~~~~Wf~~~   94 (246)
T 4f21_A           25 MNYELMEPAK--------QARFCVIWLHGLG--ADGHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMRAWYDIK   94 (246)
T ss_dssp             CCEEEECCSS--------CCCEEEEEEEC----CCCCCGGGGGGGCCSCCTTEEEEEECGGGSCTTTHHHHHHHSCTTCC
T ss_pred             cCceEeCCCC--------cCCeEEEEEcCCC--CCHHHHHHHHHHhhhcCCCeEEEeCCCCccccccCCCCCcccccccc
Confidence            4556777864        3457999999973  333455555666643  378889887432110      01111110 


Q ss_pred             ------hccCCccchHHHHH----HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          546 ------LLGRWGIVDVNDCC----SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       546 ------~~~~~g~~~~~D~~----~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                            .....-...+....    ..++...+. .+|++||++.|+|+||.+++.++ ++|+.|+++|+++|....
T Consensus        95 ~~~~~~~~~~~d~~~i~~~~~~i~~li~~~~~~-gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~  169 (246)
T 4f21_A           95 SLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQ-GIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPA  169 (246)
T ss_dssp             CC---CGGGGSCCC-CHHHHHHHHHHHHHHHHC--CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTT
T ss_pred             cccccchhhhhhHHHHHHHHHHHHHHHHHHHHc-CCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCc
Confidence                  00000011122222    333333344 48999999999999999999999 889999999999997543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.51  E-value=2.3e-05  Score=86.09  Aligned_cols=284  Identities=7%  Similarity=-0.025  Sum_probs=152.0

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCC-CCcccCCCCCccceeeeecC-CceEEEeC--C-EEEEEeC
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGD-EPSDITPKEYAVRTTAQEYG-GGAFRIFG--D-TVIFSNY  162 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg-~~~~l~p~~~~~r~~~~~~g-~~~~~~s~--d-~l~f~~~  162 (623)
                      ..+..+.|+| ++.+.+..     ++...+|........ +....+..        |... +.+.++++  + ..+++..
T Consensus        19 ~~v~~~~~spdg~~l~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~--------h~~~~v~~~~~sp~~~~~~l~s~~   85 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC-----GKSAFVRCLDDGDSKVPPVVQFTG--------HGSSVVTTVKFSPIKGSQYLCSGD   85 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE-----TTEEEEEECCSSCCSSCSEEEECT--------TTTSCEEEEEECSSTTCCEEEEEE
T ss_pred             CceeEEEECCCCCEEEEec-----CCeEEEEECCCCCCccccceEEec--------CCCceEEEEEECcCCCCCEEEEec
Confidence            3466889999 66666654     356566655421000 11111111        1222 44566666  5 5556666


Q ss_pred             CCCcEEEEeCCCC------C-CCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          163 KDQRLYKHSIDSK------D-SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       163 ~~~~l~~~d~~~g------~-~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++.|.++|+.++      . .....+...    ........|+|+|++|+....+...     ...|+++|.  ++.  
T Consensus        86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~~~~~-----~~~v~~~d~--~~~--  152 (615)
T 1pgu_A           86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVL----AGPISDISWDFEGRRLCVVGEGRDN-----FGVFISWDS--GNS--  152 (615)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEEECC----SSCEEEEEECTTSSEEEEEECCSSC-----SEEEEETTT--CCE--
T ss_pred             CCCEEEEEeCCCCcccccccccccchhhcc----cccEEEEEEeCCCCEEEEeccCCCC-----ccEEEEEEC--CCc--
Confidence            7888888888532      0 012222221    2346678899999999887664322     256787773  321  


Q ss_pred             ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc---cCcCceeCCC-
Q 006979          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE---SPTEPKWSSK-  311 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ws~D-  311 (623)
                      ...+......+....|+|||+++++....       ...|.++|+..+.   ....+.+..    .   .+....|+|| 
T Consensus       153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------d~~v~vwd~~~~~---~~~~~~~~~----~~~~~v~~~~~~~~~  218 (615)
T 1pgu_A          153 LGEVSGHSQRINACHLKQSRPMRSMTVGD-------DGSVVFYQGPPFK---FSASDRTHH----KQGSFVRDVEFSPDS  218 (615)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEEEEET-------TTEEEEEETTTBE---EEEEECSSS----CTTCCEEEEEECSTT
T ss_pred             ceeeecCCccEEEEEECCCCCcEEEEEeC-------CCcEEEEeCCCcc---eeeeecccC----CCCceEEEEEECCCC
Confidence            44555545556678899999844444322       2348888877652   333444433    3   5678899999 


Q ss_pred             CcEEEEEeCCCCeeeEEEEecCCCeEEEEe-----ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          312 GELFFVTDRKNGFWNLHKWIESNNEVLAIY-----SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       312 G~l~~~~~~~~g~~~L~~~d~~~~~~~~l~-----~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                      |++++.... ++  .|..+|+.+++.....     .....+..         +.+   + +++.+ ++...++.  |.++
T Consensus       219 ~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~---------~~~---~-~~~~l-~~~~~d~~--i~~w  279 (615)
T 1pgu_A          219 GEFVITVGS-DR--KISCFDGKSGEFLKYIEDDQEPVQGGIFA---------LSW---L-DSQKF-ATVGADAT--IRVW  279 (615)
T ss_dssp             CCEEEEEET-TC--CEEEEETTTCCEEEECCBTTBCCCSCEEE---------EEE---S-SSSEE-EEEETTSE--EEEE
T ss_pred             CCEEEEEeC-CC--eEEEEECCCCCEeEEecccccccCCceEE---------EEE---c-CCCEE-EEEcCCCc--EEEE
Confidence            885555544 34  4666777776644333     11111221         222   1 44444 44444554  4455


Q ss_pred             eCCCCcee-ecccCC----cceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          387 DDFGHSLS-LLDIPF----TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       387 d~~~~~~~-~lt~~~----~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      |+.+++.. .+....    ..+..+ .++++.++....    ...++.+++..++
T Consensus       280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~g~i~~~d~~~~~  330 (615)
T 1pgu_A          280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL----DGTLNFYELGHDE  330 (615)
T ss_dssp             ETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET----TSCEEEEETTEEE
T ss_pred             ECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEEC----CCCEEEEECCCCc
Confidence            77665543 333321    122233 345665544332    2456777766543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.50  E-value=1.5e-05  Score=81.21  Aligned_cols=265  Identities=11%  Similarity=0.017  Sum_probs=140.0

Q ss_pred             CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCc
Q 006979           88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR  166 (623)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~  166 (623)
                      ...+..+.|+|++.+...-..   +|...+|.....   +....++..        ...+.+..++++ ..+++...++.
T Consensus        55 ~~~v~~~~~s~d~~~l~s~s~---Dg~v~iWd~~~~---~~~~~~~~~--------~~~v~~~~~s~~~~~l~s~~~d~~  120 (340)
T 1got_B           55 LAKIYAMHWGTDSRLLLSASQ---DGKLIIWDSYTT---NKVHAIPLR--------SSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEET---TTEEEEEETTTC---CEEEEEECS--------SSCEEEEEECTTSSEEEEEETTCE
T ss_pred             CCceEEEEECCCCCEEEEEeC---CCcEEEEECCCC---CcceEeecC--------CccEEEEEECCCCCEEEEEeCCCe
Confidence            345667888884444444333   477777754322   222212111        111334455554 45556667788


Q ss_pred             EEEEeCCCCCCCce---ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC
Q 006979          167 LYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (623)
Q Consensus       167 l~~~d~~~g~~~~~---~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~  243 (623)
                      +.++++.++....+   .+...    ........|+|+++ ++....+         ..+.++|+.+++.  ...+....
T Consensus       121 v~iw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~-l~s~s~d---------~~i~~wd~~~~~~--~~~~~~h~  184 (340)
T 1got_B          121 CSIYNLKTREGNVRVSRELAGH----TGYLSCCRFLDDNQ-IVTSSGD---------TTCALWDIETGQQ--TTTFTGHT  184 (340)
T ss_dssp             EEEEETTTCSBSCEEEEEEECC----SSCEEEEEEEETTE-EEEEETT---------SCEEEEETTTTEE--EEEECCCS
T ss_pred             EEEEECccCCCcceeEEEecCC----CccEEEEEECCCCc-EEEEECC---------CcEEEEECCCCcE--EEEEcCCC
Confidence            99999876411111   12211    22345567888875 4443332         4588889988762  23344333


Q ss_pred             CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCC
Q 006979          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG  323 (623)
Q Consensus       244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g  323 (623)
                      ..+....|+|||+.|+-...|.        .|.++|+..+.   ....+.+..    ..+....|+|||++++.... ++
T Consensus       185 ~~v~~~~~~~~~~~l~sg~~d~--------~v~~wd~~~~~---~~~~~~~h~----~~v~~v~~~p~~~~l~s~s~-d~  248 (340)
T 1got_B          185 GDVMSLSLAPDTRLFVSGACDA--------SAKLWDVREGM---CRQTFTGHE----SDINAICFFPNGNAFATGSD-DA  248 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTS--------CEEEEETTTCS---EEEEECCCS----SCEEEEEECTTSSEEEEEET-TS
T ss_pred             CceEEEEECCCCCEEEEEeCCC--------cEEEEECCCCe---eEEEEcCCc----CCEEEEEEcCCCCEEEEEcC-CC
Confidence            4456678999999777555332        37888987763   334455444    45678899999995555544 45


Q ss_pred             eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce-eecccCCcc
Q 006979          324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTD  402 (623)
Q Consensus       324 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~-~~lt~~~~~  402 (623)
                      .  |..+|..+++...........      .....+.|.   |+++.+ ++...++.  |.++|..+++. ..+......
T Consensus       249 ~--v~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s---~~g~~l-~~g~~d~~--i~vwd~~~~~~~~~~~~h~~~  314 (340)
T 1got_B          249 T--CRLFDLRADQELMTYSHDNII------CGITSVSFS---KSGRLL-LAGYDDFN--CNVWDALKADRAGVLAGHDNR  314 (340)
T ss_dssp             C--EEEEETTTTEEEEEECCTTCC------SCEEEEEEC---TTSSEE-EEEETTSE--EEEEETTTCCEEEEEECCSSC
T ss_pred             c--EEEEECCCCcEEEEEccCCcc------cceEEEEEC---CCCCEE-EEECCCCe--EEEEEcccCcEeeEeecCCCc
Confidence            4  445576666533222211100      011223333   266544 44545665  44557655543 344443444


Q ss_pred             eEee--eecCCE
Q 006979          403 IDNI--TLGNDC  412 (623)
Q Consensus       403 v~~~--~~~~~~  412 (623)
                      +..+  ++++..
T Consensus       315 v~~~~~s~dg~~  326 (340)
T 1got_B          315 VSCLGVTDDGMA  326 (340)
T ss_dssp             EEEEEECTTSSC
T ss_pred             EEEEEEcCCCCE
Confidence            5544  444443

>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A

Probab=98.50  E-value=1.1e-07  Score=100.54  Aligned_cols=110  Identities=11%  Similarity=-0.029  Sum_probs=72.6

Q ss_pred             CCCCEEEEecCCCCCcccCcCCH-HhHHHHc-CceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNL-SIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~-~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      ...|+||++||..... ...|.. ....+.+ .+|.|+++|+||.+...  +......  -....+|+.+.+++|.++-.
T Consensus        68 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~~~--~~~~a~~l~~ll~~L~~~~g  142 (450)
T 1rp1_A           68 TDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTS--YTQAANN--VRVVGAQVAQMLSMLSANYS  142 (450)
T ss_dssp             TTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSC--HHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCc--chHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence            3468999999985332 113333 3444555 48999999999854321  2111100  01124567777888864323


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.+++.|+|||+||++++.++ .+|+ ++.++...|..
T Consensus       143 ~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~  180 (450)
T 1rp1_A          143 YSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE  180 (450)
T ss_dssp             CCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred             CChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence            5678999999999999999999 7788 88888776643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.50  E-value=1.8e-05  Score=82.42  Aligned_cols=115  Identities=12%  Similarity=0.071  Sum_probs=74.5

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      .....|+|||++|+....+         ..|.++|+.+++.  ...+......+....|+|||++|+....|        
T Consensus       126 v~~v~~s~dg~~l~s~~~d---------~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~d--------  186 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAED---------RLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKLVSGSGD--------  186 (393)
T ss_dssp             EEEEEECTTSSEEEEEETT---------SCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETT--------
T ss_pred             EEEEEECCCCCEEEEEcCC---------CeEEEEECCCCcE--EEEEccCCCCEEEEEEcCCCCEEEEecCC--------
Confidence            4578899999988876554         4588889988762  23344334445668899999998766533        


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC-CCcEEEEEeCCCCeeeEEEEecCCCeE
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEV  337 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~-DG~l~~~~~~~~g~~~L~~~d~~~~~~  337 (623)
                      ..|.+.|+.++.   ....+.. .    ..+....|+| ||++++.... ++.  +..+|..+++.
T Consensus       187 ~~v~iwd~~~~~---~~~~~~~-~----~~v~~~~~~~~~~~~l~~~s~-d~~--v~iwd~~~~~~  241 (393)
T 1erj_A          187 RTVRIWDLRTGQ---CSLTLSI-E----DGVTTVAVSPGDGKYIAAGSL-DRA--VRVWDSETGFL  241 (393)
T ss_dssp             SEEEEEETTTTE---EEEEEEC-S----SCEEEEEECSTTCCEEEEEET-TSC--EEEEETTTCCE
T ss_pred             CcEEEEECCCCe---eEEEEEc-C----CCcEEEEEECCCCCEEEEEcC-CCc--EEEEECCCCcE
Confidence            247888987762   2222222 2    3456788999 7875555544 454  44557766653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.50  E-value=2.9e-05  Score=78.68  Aligned_cols=202  Identities=8%  Similarity=0.034  Sum_probs=110.5

Q ss_pred             CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCC-ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~-~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.++.++++ ++++...++.|.++++.++... ...+...  ..........|+|+|+.|+....+         ..+.+
T Consensus        17 v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~s~D---------~~v~i   84 (330)
T 2hes_X           17 IWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDET--AHKKAIRSVAWRPHTSLLAAGSFD---------STVSI   84 (330)
T ss_dssp             EEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTT--CCCSCEEEEEECTTSSEEEEEETT---------SCEEE
T ss_pred             eeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecC--CccCCEEEEEECCCCCEEEEEeCC---------CcEEE
Confidence            445667777 5666667888999998764101 1223211  012346678899999988776654         33566


Q ss_pred             EEcCCCC-----cccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCC-ceeeeEEEcCCCCCc
Q 006979          226 IALNGQN-----IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DVYKRVCVAGFDPTI  299 (623)
Q Consensus       226 idl~~g~-----~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~-~~~~~~~~~~~~~~~  299 (623)
                      .|+..+.     ......+....+.+...+|||||++|+-...|.        .|.+.|+...+ .......+.+..   
T Consensus        85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~--------~v~iwd~~~~~~~~~~~~~~~~h~---  153 (330)
T 2hes_X           85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK--------SVWIWETDESGEEYECISVLQEHS---  153 (330)
T ss_dssp             EEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTS--------CEEEEECCTTCCCCEEEEEECCCS---
T ss_pred             EEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC--------EEEEEeccCCCCCeEEEEEeccCC---
Confidence            6664321     000222333334556688999999988776443        27788885332 111233344444   


Q ss_pred             cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEe---ecccccccccccccCcceeEEeecCCC-CEEEEEE
Q 006979          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEK-NLIACSY  375 (623)
Q Consensus       300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~---~~~~~~~~~~w~~~~~~~~~l~~s~~~-~~l~~~~  375 (623)
                       ..+....|+|||++++.... ++.-+||..  .++..+.+.   .....+....|.+            ++ ...+++.
T Consensus       154 -~~v~~v~~~p~~~~l~s~s~-D~~i~iW~~--~~~~~~~~~~~~~h~~~v~~~~~~~------------~~~~~~l~s~  217 (330)
T 2hes_X          154 -QDVKHVIWHPSEALLASSSY-DDTVRIWKD--YDDDWECVAVLNGHEGTVWSSDFDK------------TEGVFRLCSG  217 (330)
T ss_dssp             -SCEEEEEECSSSSEEEEEET-TSCEEEEEE--ETTEEEEEEEECCCSSCEEEEEECC------------SSSSCEEEEE
T ss_pred             -CceEEEEECCCCCEEEEEcC-CCeEEEEEC--CCCCeeEEEEccCCCCcEEEEEecC------------CCCeeEEEEE
Confidence             46778899999986555554 466666643  344322222   1211222222221            42 3355566


Q ss_pred             EECCeEEEEEEe
Q 006979          376 RQNGRSYLGILD  387 (623)
Q Consensus       376 ~~~g~~~L~~~d  387 (623)
                      ..++.-+||.+.
T Consensus       218 s~D~~v~iw~~~  229 (330)
T 2hes_X          218 SDDSTVRVWKYM  229 (330)
T ss_dssp             ETTSCEEEEEEE
T ss_pred             eCCCeEEEEEec
Confidence            677877787664

>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19

Probab=98.50  E-value=1.1e-07  Score=100.58  Aligned_cols=111  Identities=11%  Similarity=-0.051  Sum_probs=74.6

Q ss_pred             CCCCEEEEecCCCCCcccCcCCH-HhHHH-HcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNL-SIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~-~~~~~-a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      ...|+||++||..... ...|.. .+..| ...+|.|+++|++|.+...  +..... + -....+|+.+.+++|.++..
T Consensus        67 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~~-~-~~~v~~~la~ll~~L~~~~g  141 (449)
T 1hpl_A           67 TGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSGSRTA--YSQASQ-N-VRIVGAEVAYLVGVLQSSFD  141 (449)
T ss_dssp             TTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHHHSSC--HHHHHH-H-HHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcccCCc--cHHHHH-H-HHHHHHHHHHHHHHHHHhcC
Confidence            3458999999974332 223333 34444 4579999999999855432  211110 0 01123567777888864433


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ++.+++.|+|||+||++++.++ .+|++++.++...|..
T Consensus       142 ~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~  180 (449)
T 1hpl_A          142 YSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE  180 (449)
T ss_dssp             CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred             CCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence            5678999999999999999999 7899999998776643

>4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A*

Probab=98.49  E-value=2.1e-07  Score=93.08  Aligned_cols=149  Identities=13%  Similarity=0.096  Sum_probs=87.2

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCC---CCCCCCCEEEEecCCCCCcccCc-CCHHhHHHHcCceEEEEECCC--C
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQA---SPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYG--G  534 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~---~~~~~~Pliv~~hGg~~~~~~~~-~~~~~~~~a~~G~~v~~~d~r--G  534 (623)
                      ...+++.+..-+.+....+|.|.+  |..   ++++++|+|.++||......... .....++..+.|.+++.++-.  +
T Consensus        14 ~~~~~~~S~~l~~~~~~~VyLPp~--y~~~~~~~~~~~PVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~   91 (299)
T 4fol_A           14 LIKLSHNSNSTKTSMNVNIYLPKH--YYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRG   91 (299)
T ss_dssp             EEEEEEECTTTSSEEEEEEEECGG--GGCC------CBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEEECSSCCS
T ss_pred             EEEEEEECcccCCceEEEEEcCCC--CCccccccCCCcCEEEEECCCCCChHHHHHhchHhHHHHHcCchhhccCCCcce
Confidence            345666665467788889999976  432   13678999999999843322111 112344556789999998732  1


Q ss_pred             CC---------CCch---hHHHhh------ccCCccchHHHHHHHHHHHHh----CCCCCCCceEEEEcChHHHHHHHHh
Q 006979          535 ST---------GYGR---EFRERL------LGRWGIVDVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       535 s~---------~~g~---~~~~~~------~~~~g~~~~~D~~~~~~~l~~----~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      ..         ..|.   .|.+..      ..++-..-.+++...++.-..    +...|+++.+|.|+||||+.++.++
T Consensus        92 ~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~a  171 (299)
T 4fol_A           92 DEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGY  171 (299)
T ss_dssp             TTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHH
T ss_pred             eecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHH
Confidence            10         0010   011110      111111223344444442221    1224567899999999999999988


Q ss_pred             -cC--CCceeEEEecccCCCHH
Q 006979          593 -AF--RDTFKAGASLYGVSIPV  611 (623)
Q Consensus       593 -~~--~~~f~a~v~~~g~~d~~  611 (623)
                       ++  |+.|+++.+.+|+++..
T Consensus       172 l~~~~~~~~~~~~s~s~~~~p~  193 (299)
T 4fol_A          172 LKGYSGKRYKSCSAFAPIVNPS  193 (299)
T ss_dssp             HHTGGGTCCSEEEEESCCCCGG
T ss_pred             HhCCCCCceEEEEecccccCcc
Confidence             64  78999999999998753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.49  E-value=3.1e-05  Score=81.24  Aligned_cols=205  Identities=12%  Similarity=0.063  Sum_probs=116.9

Q ss_pred             ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCCC-c
Q 006979           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ-R  166 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~-~  166 (623)
                      .+..+.+++++.|||.+..   ++  .|++++..++ ....+....        .. .. .+++++  .+++.+...+ .
T Consensus       132 ~P~~la~d~~g~lyv~d~~---~~--~I~~id~~~g-~~~~~~~~~--------~~-~~-ia~~~~g~~l~~~d~~~~~~  195 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRD---DP--RVRLISVDDN-KVTTVHPGF--------KG-GK-PAVTKDKQRVYSIGWEGTHT  195 (409)
T ss_dssp             CEEEEEECSTTEEEEEETT---TT--EEEEEETTTT-EEEEEEETC--------CB-CB-CEECTTSSEEEEEBSSTTCE
T ss_pred             CceEEEEeCCCCEEEEecC---CC--cEEEEECCCC-EEEEeeccC--------CC-Cc-eeEecCCCcEEEEecCCCce
Confidence            4567888886679998843   23  3666665522 222222111        01 12 445444  5666655443 7


Q ss_pred             EEEEeCCCCCCCceec----CCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec---
Q 006979          167 LYKHSIDSKDSSPLPI----TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL---  239 (623)
Q Consensus       167 l~~~d~~~g~~~~~~L----t~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l---  239 (623)
                      ||+++..++ ...+.+    ...    ..+..+.+++|++..|++ ....        ..|+++|++++.   ...+   
T Consensus       196 I~~~d~~~~-~~~~~~g~~~~~~----~~~p~~iav~p~~g~lyv-~d~~--------~~I~~~d~~~~~---~~~~~~~  258 (409)
T 3hrp_A          196 VYVYMKASG-WAPTRIGQLGSTF----SGKIGAVALDETEEWLYF-VDSN--------KNFGRFNVKTQE---VTLIKQL  258 (409)
T ss_dssp             EEEEEGGGT-TCEEEEEECCTTS----CSCCCBCEECTTSSEEEE-ECTT--------CEEEEEETTTCC---EEEEEEC
T ss_pred             EEEEEcCCC-ceeEEeeeccchh----cCCcEEEEEeCCCCeEEE-EECC--------CcEEEEECCCCC---EEEEecc
Confidence            999998765 223344    211    234467889996666666 3321        579999998876   4433   


Q ss_pred             -ccCCC-cc--cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCC--CCc---------cccCc
Q 006979          240 -VSGSD-FY--AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD--PTI---------VESPT  304 (623)
Q Consensus       240 -~~~~~-~~--~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~--~~~---------~~~~~  304 (623)
                       ..+.. ..  ...+|+|++.+|++....       ...|++++.++.    .. .+.+..  ..+         ...+.
T Consensus       259 ~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-------~~~I~~~~~~g~----~~-~~~g~~~~~g~~dg~~~~~~~~~P~  326 (409)
T 3hrp_A          259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQN-------LSSVYKITPDGE----CE-WFCGSATQKTVQDGLREEALFAQPN  326 (409)
T ss_dssp             CCCSCCCCSSCCEEEEETTTTEEEEEETT-------TTEEEEECTTCC----EE-EEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred             cccCCCCCCccccEEEeCCCCEEEEEeCC-------CCEEEEEecCCC----EE-EEEeCCCCCCcCCCcccccEeCCCe
Confidence             22221 22  267899987888877522       346888887643    12 222211  000         02345


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEe
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~  341 (623)
                      .+++++||++| +++. .+..+|.++++.+++...+.
T Consensus       327 gia~d~dG~ly-vad~-~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          327 GMTVDEDGNFY-IVDG-FKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             EEEECTTCCEE-EEET-TTTCEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCEE-EEeC-CCCCEEEEEECCCCEEEEEe
Confidence            67899999854 5553 14567999997677766554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.48  E-value=0.00012  Score=80.80  Aligned_cols=302  Identities=12%  Similarity=0.109  Sum_probs=160.2

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcE
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l  167 (623)
                      ..+.++.+++ +++|||.+...     ..|++.+.+  |..+..+...    ...+   ...+++..+.+|+++...+.|
T Consensus       171 ~~P~Glald~~~~~LY~aD~~~-----~~I~~~~~d--G~~~~~~~~~----~~~~---P~gi~~~~~~ly~td~~~~~V  236 (619)
T 3s94_A          171 YWPNGLTLDYEEQKLYWADAKL-----NFIHKSNLD--GTNRQAVVKG----SLPH---PFALTLFEDILYWTDWSTHSI  236 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTT-----CCEEEESSS--CCEEC----------------CCCEEESSSEEEEECTTTCSE
T ss_pred             CCCcEEEEEccCCEEEEEeCCC-----CeEEEecCC--CCccEEEEeC----CCCC---ceEEEEeCCEEEEecCCCCEE
Confidence            3467889998 89999998542     247777776  3333333211    0001   123455677899998888889


Q ss_pred             EEEeCCCCCCCceecCCCCCCC-Ceeec--------------------cee-eCCCCCEEEEEEeccC----C--C----
Q 006979          168 YKHSIDSKDSSPLPITPDYGEP-LVSYA--------------------DGI-FDPRFNRYVTVREDRR----Q--D----  215 (623)
Q Consensus       168 ~~~d~~~g~~~~~~Lt~~~~~~-~~~~~--------------------d~~-~sPdG~~l~~v~~~~~----~--~----  215 (623)
                      +++|..+| ...+.+......+ ...+.                    ..+ .+|.+....+.+...-    +  .    
T Consensus       237 ~~~d~~tg-~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~  315 (619)
T 3s94_A          237 LACNKYTG-EGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG  315 (619)
T ss_dssp             EEEESSSC-CCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSS
T ss_pred             EEEECCCC-cccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCC
Confidence            99998776 2333333221000 00000                    001 1121111111111100    0  0    


Q ss_pred             CC-----CceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeE
Q 006979          216 AL-----NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV  290 (623)
Q Consensus       216 ~~-----~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~  290 (623)
                      +.     .....|..++++++..........+-.......+.+.+.+|+|....       ...|+.+++++..   ...
T Consensus       316 ~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~-------~~~I~r~~~~g~~---~~~  385 (619)
T 3s94_A          316 ATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDE-------VRAIRRSFIDGSG---SQF  385 (619)
T ss_dssp             CSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCS---CEE
T ss_pred             CceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCC-------CCeEEEEEcCCCc---cEE
Confidence            00     01145667777665311111111222233445688888889998632       3469999988753   233


Q ss_pred             EEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCC
Q 006979          291 CVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKN  369 (623)
Q Consensus       291 ~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~  369 (623)
                      ++...-    ..+...+....++ ||| ++.  +...|.++++++...+.|..+  .+..|      +.+++.+   ..+
T Consensus       386 v~~~~~----~~p~GlAvD~~~~~lY~-tD~--~~~~I~v~~~~G~~~~~l~~~--~l~~P------~~iavdp---~~G  447 (619)
T 3s94_A          386 VVTAQI----AHPDGIAVDWVARNLYW-TDT--GTDRIEVTRLNGTMRKILISE--DLEEP------RAIVLDP---MVG  447 (619)
T ss_dssp             EECSSC----SCCCEEEEETTTTEEEE-EET--TTTEEEEEETTSCSCEEEECT--TCCSE------EEEEEET---TTT
T ss_pred             EEECCC----CCcCceEEecccCcEEE-EeC--CCCcEEEEeCCCCeEEEEEEC--CCCCe------eeEEEEc---CCC
Confidence            333221    3445667765555 655 454  456788888877655555432  22222      3344432   567


Q ss_pred             EEEEEEEECCeEEEEEEeCCCCceeecccC-CcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcce
Q 006979          370 LIACSYRQNGRSYLGILDDFGHSLSLLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (623)
Q Consensus       370 ~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~-~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~  437 (623)
                      .+||+... ...+|++.++++...+.+... ...-.++  +.+++++|+.-+.   ...|+++++++...+
T Consensus       448 ~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~---~~~I~~~~~dG~~~~  514 (619)
T 3s94_A          448 YMYWTDWG-EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAK---TDKIEVMNTDGTGRR  514 (619)
T ss_dssp             EEEEEECS-SSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT---TTEEEEEESSSCCCE
T ss_pred             cEEEecCC-CCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECC---CCEEEEEecCCCceE
Confidence            88887632 247899999998766655432 2223344  6668888887432   357999999876543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.47  E-value=1.7e-05  Score=87.90  Aligned_cols=235  Identities=6%  Similarity=-0.030  Sum_probs=129.5

Q ss_pred             EEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          150 FRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       150 ~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      .++++|  .+++..  ++.++++++.++ ...+.++..    .......+|||||++|+-...+         ..+.+.|
T Consensus        24 ~~~spdg~~l~~~~--~~~v~l~~~~~~-~~~~~~~~h----~~~v~~~~~spdg~~lasg~~d---------~~v~lWd   87 (611)
T 1nr0_A           24 LGNTPAGDKIQYCN--GTSVYTVPVGSL-TDTEIYTEH----SHQTTVAKTSPSGYYCASGDVH---------GNVRIWD   87 (611)
T ss_dssp             CEECTTSSEEEEEE--TTEEEEEETTCS-SCCEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEE
T ss_pred             EeeCCCCCEEEeCC--CCEEEEecCCCc-ccCeEecCC----CCceEEEEECCCCcEEEEEeCC---------CCEEEeE
Confidence            344444  566654  346899998765 344555543    3346678899999988776554         4578888


Q ss_pred             cCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (623)
Q Consensus       228 l~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
                      +.+++......+......+...+|||||++|+....+..    ....|++.|  .+.   ....+.+..    ..+....
T Consensus        88 ~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~----~~~~v~~wd--~~~---~~~~l~gh~----~~v~~v~  154 (611)
T 1nr0_A           88 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE----RFGHVFLFD--TGT---SNGNLTGQA----RAMNSVD  154 (611)
T ss_dssp             SSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS----CSEEEEETT--TCC---BCBCCCCCS----SCEEEEE
T ss_pred             CCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC----ceeEEEEee--CCC---CcceecCCC----CCceEEE
Confidence            865431101223333344566889999999987764322    123466555  332   122234444    4677889


Q ss_pred             eCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE
Q 006979          308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (623)
Q Consensus       308 ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~  385 (623)
                      |+||+. +++.... ++.-+||  |..+++...... ....+..         ..|.   |+++ ++++...++.-+|| 
T Consensus       155 f~p~~~~~l~s~s~-D~~v~lw--d~~~~~~~~~l~~H~~~V~~---------v~fs---pdg~-~las~s~D~~i~lw-  217 (611)
T 1nr0_A          155 FKPSRPFRIISGSD-DNTVAIF--EGPPFKFKSTFGEHTKFVHS---------VRYN---PDGS-LFASTGGDGTIVLY-  217 (611)
T ss_dssp             ECSSSSCEEEEEET-TSCEEEE--ETTTBEEEEEECCCSSCEEE---------EEEC---TTSS-EEEEEETTSCEEEE-
T ss_pred             ECCCCCeEEEEEeC-CCeEEEE--ECCCCeEeeeeccccCceEE---------EEEC---CCCC-EEEEEECCCcEEEE-
Confidence            999997 4554444 4554554  555554333222 2222222         2333   2665 44555566765554 


Q ss_pred             EeCCCCce-eecc-------cCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          386 LDDFGHSL-SLLD-------IPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       386 ~d~~~~~~-~~lt-------~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                       |..+++. ..+.       .....+..+  ++++..++ +++..   ..+.+.++.+++
T Consensus       218 -d~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~-s~s~D---~~v~lWd~~~~~  272 (611)
T 1nr0_A          218 -NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASAD---KTIKIWNVATLK  272 (611)
T ss_dssp             -ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE-EEETT---SEEEEEETTTTE
T ss_pred             -ECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE-EEeCC---CeEEEEeCCCCc
Confidence             6555544 3332       122345555  56666554 43322   356667777654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.47  E-value=4.3e-05  Score=84.45  Aligned_cols=206  Identities=10%  Similarity=0.117  Sum_probs=122.3

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCc
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR  166 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~  166 (623)
                      ...+.++.+++ ++.|||.+...   +  .|++....+......++..+..      .-.+-++.+..+.+|+.+...++
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~---~--~I~r~~~~g~~~~~~v~~~~~~------~P~GlAvD~~~~~ly~~d~~~~~  107 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSE---E--AIKRTEFNKTESVQNVVVSGLL------SPDGLACDWLGEKLYWTDSETNR  107 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTT---T--EEEEEEC-----CEEEECSSCS------CEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEEEeCCCEEEEEECCC---C--eEEEEEccCCCceEEEEeCCCC------CcCeEEEEecCCEEEEEeCCCCE
Confidence            34456788888 99999998652   3  3666665521111223332210      11122333335689999888889


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc-CCCc
Q 006979          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDF  245 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~-~~~~  245 (623)
                      |.++++++.  ..+.|...   ....-.+.+++|.+.+|+++....       ...|++.++++..   .+.+.. ....
T Consensus       108 I~v~~~dG~--~~~~l~~~---~l~~P~~Iavdp~~g~ly~tD~g~-------~~~I~r~~~dG~~---~~~l~~~~~~~  172 (619)
T 3s94_A          108 IEVSNLDGS--LRKVLFWQ---ELDQPRAIALDPSSGFMYWTDWGE-------VPKIERAGMDGSS---RFIIINSEIYW  172 (619)
T ss_dssp             EEEEETTSC--SCEEEECS---SCSCCCCEEEETTTTEEEEEECSS-------SCEEEEEETTSCS---CEEEECSSCSS
T ss_pred             EEEEECCCC--CEEEEEeC---CCCCCceEEEecCCCeEEEeccCC-------CCEEEEEECCCCc---eEEEEeCCCCC
Confidence            999999865  44455422   022345788999888888875421       1579999999876   455543 3334


Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW  325 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~  325 (623)
                      ..+.+++|++++|||....       ...|+++++++..   .+.+..+..    ..+.......|  .+|.++.  +..
T Consensus       173 P~Glald~~~~~LY~aD~~-------~~~I~~~~~dG~~---~~~~~~~~~----~~P~gi~~~~~--~ly~td~--~~~  234 (619)
T 3s94_A          173 PNGLTLDYEEQKLYWADAK-------LNFIHKSNLDGTN---RQAVVKGSL----PHPFALTLFED--ILYWTDW--STH  234 (619)
T ss_dssp             EEEEEEETTTTEEEEEETT-------TCCEEEESSSCCE---EC-------------CCCEEESSS--EEEEECT--TTC
T ss_pred             CcEEEEEccCCEEEEEeCC-------CCeEEEecCCCCc---cEEEEeCCC----CCceEEEEeCC--EEEEecC--CCC
Confidence            5567899999999998633       3359999998752   222332222    33456666544  4455665  455


Q ss_pred             eEEEEecCCCeE
Q 006979          326 NLHKWIESNNEV  337 (623)
Q Consensus       326 ~L~~~d~~~~~~  337 (623)
                      .|+++|..+++.
T Consensus       235 ~V~~~d~~tg~~  246 (619)
T 3s94_A          235 SILACNKYTGEG  246 (619)
T ss_dssp             SEEEEESSSCCC
T ss_pred             EEEEEECCCCcc
Confidence            788888877653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.46  E-value=1.9e-06  Score=103.81  Aligned_cols=266  Identities=10%  Similarity=0.023  Sum_probs=143.8

Q ss_pred             cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcEE
Q 006979           91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY  168 (623)
Q Consensus        91 ~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l~  168 (623)
                      +..+.++| +..+..-.    ++|...+|.....   +....+..        |...+.+..++++ ..+++...++.|.
T Consensus       964 i~~~~~sp~g~~l~~g~----~~g~i~i~d~~~~---~~~~~~~~--------h~~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A          964 VSCCCLSPHLEYVAFGD----EDGAIKIIELPNN---RVFSSGVG--------HKKAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp             EEEEEECTTSSEEEEEE----TTSCCEEEETTTT---SCEEECCC--------CSSCCCCEEECSSSSCEEEECSSSBEE
T ss_pred             EEEEEEcCCCCEEEEEc----CCCCEEEEEcCCC---ceeeeccc--------CCCceEEEEECCCCCEEEEEcCCCEEE
Confidence            45567777 44333322    2466666655432   22222211        2223455666665 4556666788899


Q ss_pred             EEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccc
Q 006979          169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF  248 (623)
Q Consensus       169 ~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~  248 (623)
                      ++++.++  ....+...    ........|+|+++.+ ....+         +.+.++|+.+++.  .+.+......+..
T Consensus      1029 vwd~~~~--~~~~~~~~----~~~v~~~~~~~~~~l~-~~~~d---------g~v~vwd~~~~~~--~~~~~~~~~~v~~ 1090 (1249)
T 3sfz_A         1029 VWNWQTG--DYVFLQAH----QETVKDFRLLQDSRLL-SWSFD---------GTVKVWNVITGRI--ERDFTCHQGTVLS 1090 (1249)
T ss_dssp             EEETTTT--EEECCBCC----SSCEEEEEECSSSEEE-EEESS---------SEEEEEETTTTCC--CEEEECCSSCCCC
T ss_pred             EEECCCC--ceEEEecC----CCcEEEEEEcCCCcEE-EEECC---------CcEEEEECCCCce--eEEEcccCCcEEE
Confidence            9999876  44433332    3456678899988544 33332         5689999988762  3445444455667


Q ss_pred             eeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979          249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH  328 (623)
Q Consensus       249 p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~  328 (623)
                      ..|||||++|+....+.        .|.++|+..+..   ...+.+..    ..+..+.|+|||++++.... +|.-.  
T Consensus      1091 ~~~s~d~~~l~s~s~d~--------~v~iwd~~~~~~---~~~l~~h~----~~v~~~~~s~dg~~lat~~~-dg~i~-- 1152 (1249)
T 3sfz_A         1091 CAISSDATKFSSTSADK--------TAKIWSFDLLSP---LHELKGHN----GCVRCSAFSLDGILLATGDD-NGEIR-- 1152 (1249)
T ss_dssp             EEECSSSSSCEEECCSS--------CCCEECSSSSSC---SBCCCCCS----SCEEEEEECSSSSEEEEEET-TSCCC--
T ss_pred             EEECCCCCEEEEEcCCC--------cEEEEECCCcce---eeeeccCC----CcEEEEEECCCCCEEEEEeC-CCEEE--
Confidence            89999999988765432        277778876632   22333333    45678899999995555554 45544  


Q ss_pred             EEecCCCeEEEEe-ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-ecccCCcceEee
Q 006979          329 KWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI  406 (623)
Q Consensus       329 ~~d~~~~~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~~~~~v~~~  406 (623)
                      .+|..+++..... +................+.|.   |+++.++..   +|  .|.++|+.+++.. .+......+..+
T Consensus      1153 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs---~dg~~l~s~---~g--~v~vwd~~~g~~~~~~~~~~~~i~~~ 1224 (1249)
T 3sfz_A         1153 IWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS---PDSKTLVSA---GG--YLKWWNVATGDSSQTFYTNGTNLKKI 1224 (1249)
T ss_dssp             EEESSSSCCCCCCCCCC-------CCSCCCEEEEC---TTSSCEEEE---SS--SEEEBCSSSCBCCCCCCCSSCCCCCC
T ss_pred             EEECCCCceEEEeccccccccccccCceEEEEEEC---CCCCEEEEC---CC--eEEEEECCCCceeeeeeccCCcccEE
Confidence            4566565432111 100000000000011233343   377766543   24  4666777766543 333233334333


Q ss_pred             --eecCCEEEE
Q 006979          407 --TLGNDCLFV  415 (623)
Q Consensus       407 --~~~~~~~~~  415 (623)
                        ++++..++.
T Consensus      1225 ~~s~dg~~l~~ 1235 (1249)
T 3sfz_A         1225 HVSPDFRTYVT 1235 (1249)
T ss_dssp             EECSSSCCEEE
T ss_pred             EECCCCCEEEE
Confidence              666665544

>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens}

Probab=98.46  E-value=2.3e-07  Score=97.71  Aligned_cols=111  Identities=10%  Similarity=-0.068  Sum_probs=72.7

Q ss_pred             CCEEEEecCCCCCcccC-cCCHHhHHHHc-CceEEEEECCCCCCCCchhHHHhh---ccCCc----cchHHHHHHHHHHH
Q 006979          495 PPLLVKSHGGPTSEARG-ILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERL---LGRWG----IVDVNDCCSCATFL  565 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~-~~~~~~~~~a~-~G~~v~~~d~rGs~~~g~~~~~~~---~~~~g----~~~~~D~~~~~~~l  565 (623)
                      .| ||++|||++..... ........+++ .|+.|+.+|+||.|.+.. +....   ..+++    ...++|+...++++
T Consensus        39 ~P-i~l~~Ggeg~~~~~~~~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p-~~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~l  116 (446)
T 3n2z_B           39 GS-ILFYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLP-FGDNSFKDSRHLNFLTSEQALADFAELIKHL  116 (446)
T ss_dssp             CE-EEEEECCSSCHHHHHHHCHHHHHHHHHHTEEEEEECCTTSTTCCT-TGGGGGSCTTTSTTCSHHHHHHHHHHHHHHH
T ss_pred             CC-EEEEeCCCCcchhhhhcccHHHHHHHHhCCcEEEEecCCCCCCCC-CCccccccchhhccCCHHHHHHHHHHHHHHH
Confidence            46 45568887543321 11123334444 589999999999665421 11111   12222    23468888888888


Q ss_pred             HhC-CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          566 VGS-GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       566 ~~~-~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ..+ ......++.++||||||.++++++ .+|+++.++|+.+++
T Consensus       117 ~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssap  160 (446)
T 3n2z_B          117 KRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAP  160 (446)
T ss_dssp             HHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCC
T ss_pred             HHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEeccc
Confidence            764 223346899999999999999999 899999999986643

>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*

Probab=98.45  E-value=1.2e-07  Score=99.81  Aligned_cols=113  Identities=16%  Similarity=0.078  Sum_probs=77.8

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHcCce---EEEEECCCCCCCC----------ch--hHHH-------------
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW---AFVDVNYGGSTGY----------GR--EFRE-------------  544 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~---~v~~~d~rGs~~~----------g~--~~~~-------------  544 (623)
                      +..|.||++||...  ....|...+..|+++||   .|+.+|++|.|..          |.  ....             
T Consensus        20 ~~~ppVVLlHG~g~--s~~~w~~la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~l~~   97 (484)
T 2zyr_A           20 EDFRPVVFVHGLAG--SAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDK   97 (484)
T ss_dssp             -CCCCEEEECCTTC--CGGGGHHHHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHHHHH
T ss_pred             CCCCEEEEECCCCC--CHHHHHHHHHHHHHcCCCcceEEEEECCCCCccccccccccccccccccccccccccccccccc
Confidence            34567889999843  44567788999999999   6999999984421          00  0000             


Q ss_pred             hhcc---CCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCC---CceeEEEecccCCC
Q 006979          545 RLLG---RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFR---DTFKAGASLYGVSI  609 (623)
Q Consensus       545 ~~~~---~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~---~~f~a~v~~~g~~d  609 (623)
                      ....   .......+++.+.++.+.++-  +.+++.++||||||.+++.++ .+|   +.++++|.+.|..+
T Consensus        98 v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~  167 (484)
T 2zyr_A           98 ILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG  167 (484)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred             cccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence            0000   001123567777777777652  237999999999999999988 676   48999999998875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.45  E-value=3.4e-05  Score=86.85  Aligned_cols=156  Identities=15%  Similarity=0.143  Sum_probs=98.1

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+..++++ .++++...++.|.++|+.++ ...+.+...    ........|+|+|++|+....|         ..|.+
T Consensus       433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~-~~~~~~~~h----~~~v~~~~~s~~~~~l~s~s~D---------~~i~i  498 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGSWDGELRLWDLAAG-VSTRRFVGH----TKDVLSVAFSLDNRQIVSASRD---------RTIKL  498 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECC----SSCEEEEEECTTSSCEEEEETT---------SCEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCC-cceeEEeCC----CCCEEEEEEeCCCCEEEEEeCC---------CEEEE
Confidence            455666666 56677778889999999876 223344332    3346678899999988776654         34777


Q ss_pred             EEcCCCCcccceeccc----CCCcccceeeCCCCC--EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979          226 IALNGQNIQEPKVLVS----GSDFYAFPRMDPRGE--RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (623)
Q Consensus       226 idl~~g~~~~~~~l~~----~~~~~~~p~wSPDG~--~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~  299 (623)
                      .|+.+..   ...+..    ..+.+...+|||++.  .|+-...|.        .|.+.|+....   ....+.+..   
T Consensus       499 wd~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--------~v~vwd~~~~~---~~~~~~~h~---  561 (694)
T 3dm0_A          499 WNTLGEC---KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK--------TVKVWNLSNCK---LRSTLAGHT---  561 (694)
T ss_dssp             ECTTSCE---EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTS--------CEEEEETTTCC---EEEEECCCS---
T ss_pred             EECCCCc---ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCC--------eEEEEECCCCc---EEEEEcCCC---
Confidence            7776543   222321    123455678999984  454444332        38888987662   344455544   


Q ss_pred             cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE
Q 006979          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (623)
Q Consensus       300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~  337 (623)
                       ..+....|+|||++++.... ++.  |..+|..+++.
T Consensus       562 -~~v~~v~~spdg~~l~sg~~-Dg~--i~iwd~~~~~~  595 (694)
T 3dm0_A          562 -GYVSTVAVSPDGSLCASGGK-DGV--VLLWDLAEGKK  595 (694)
T ss_dssp             -SCEEEEEECTTSSEEEEEET-TSB--CEEEETTTTEE
T ss_pred             -CCEEEEEEeCCCCEEEEEeC-CCe--EEEEECCCCce
Confidence             56778899999996555544 454  44556666653

>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043}

Probab=98.44  E-value=6.1e-07  Score=83.26  Aligned_cols=96  Identities=7%  Similarity=-0.065  Sum_probs=64.8

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE  573 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~  573 (623)
                      +.|.||++||.+.... ..|..........+|   .++++|.               +....++..+.+..+.++  .+ 
T Consensus        16 ~~~~vv~~HG~~~~~~-~~~~~~~~~~~~~~~---~v~~~~~---------------~~~~~~~~~~~~~~~~~~--~~-   73 (191)
T 3bdv_A           16 QQLTMVLVPGLRDSDD-EHWQSHWERRFPHWQ---RIRQREW---------------YQADLDRWVLAIRRELSV--CT-   73 (191)
T ss_dssp             TTCEEEEECCTTCCCT-TSHHHHHHHHCTTSE---ECCCSCC---------------SSCCHHHHHHHHHHHHHT--CS-
T ss_pred             CCceEEEECCCCCCch-hhHHHHHHHhcCCeE---EEeccCC---------------CCcCHHHHHHHHHHHHHh--cC-
Confidence            3578999999964332 223233333233444   4566652               123455666666665554  23 


Q ss_pred             CceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          574 KRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       574 ~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      +++.++|||+||.+++.++ .+|++++++|..+|..+..
T Consensus        74 ~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~  112 (191)
T 3bdv_A           74 QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMR  112 (191)
T ss_dssp             SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGG
T ss_pred             CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCcccc
Confidence            7999999999999999999 7899999999999987654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.43  E-value=5.7e-05  Score=83.60  Aligned_cols=231  Identities=15%  Similarity=0.128  Sum_probs=141.8

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .|+|+  ..+.|.++++++.  ....+.+..+  -.......|+++++.|+++....        ..|++++++++.   
T Consensus         8 ~Ll~s--~~~~I~~i~l~~~--~~~~~~~~~~--~~~~~~l~~d~~~~~lywtD~~~--------~~I~r~~~~g~~---   70 (628)
T 4a0p_A            8 FLLFS--RRADIRRISLETN--NNNVAIPLTG--VKEASALDFDVTDNRIYWTDISL--------KTISRAFMNGSA---   70 (628)
T ss_dssp             EEEEE--ETTEEEEEESSCT--TCEEECCCCS--CSCEEEEEEETTTTEEEEEETTT--------TEEEEEETTSCS---
T ss_pred             EEEEE--eCCcEEEEECCCC--CcceEEEcCC--CCceEEEEEECCCCEEEEEECCC--------CeEEEEECCCCC---
Confidence            46776  3456999999865  3333222100  12234577999888888765432        679999998876   


Q ss_pred             ceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcE
Q 006979          236 PKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL  314 (623)
Q Consensus       236 ~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l  314 (623)
                      .+.+. .+.....+.+..+.++.|||....       ...|.++++++..   ...++...-    ..+...+..|....
T Consensus        71 ~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~-------~~~I~v~~~dG~~---~~~l~~~~l----~~P~~iavdp~~G~  136 (628)
T 4a0p_A           71 LEHVVEFGLDYPEGMAVDWLGKNLYWADTG-------TNRIEVSKLDGQH---RQVLVWKDL----DSPRALALDPAEGF  136 (628)
T ss_dssp             CEEEECSSCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETTSTT---CEEEECSSC----CCEEEEEEETTTTE
T ss_pred             cEEEEeCCCCCcceEEEEeCCCEEEEEECC-------CCEEEEEecCCCc---EEEEEeCCC----CCcccEEEccCCCe
Confidence            44443 333344566788888999998532       4569999998762   223332222    34556778875444


Q ss_pred             EEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979          315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (623)
Q Consensus       315 ~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~  394 (623)
                      +|.++. ....+|+++++++...+.+...   +..|      ..+.+-   ++++.|||+..  +...|+++|++++..+
T Consensus       137 lY~tD~-g~~~~I~r~~~dG~~~~~l~~~---~~~P------~GlalD---~~~~~LY~aD~--~~~~I~~~d~dG~~~~  201 (628)
T 4a0p_A          137 MYWTEW-GGKPKIDRAAMDGSERTTLVPN---VGRA------NGLTID---YAKRRLYWTDL--DTNLIESSNMLGLNRE  201 (628)
T ss_dssp             EEEEEC-SSSCEEEEEETTSCSCEEEECS---CSSE------EEEEEE---TTTTEEEEEET--TTTEEEEEETTSCSCE
T ss_pred             EEEeCC-CCCCEEEEEeCCCCceEEEECC---CCCc------ceEEEc---cccCEEEEEEC--CCCEEEEEcCCCCceE
Confidence            445665 2356899999988776666531   1111      233333   26788998864  4557999999887665


Q ss_pred             ecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          395 LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       395 ~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      .+......-.++..+++.+|++-.   ....|++++..+++
T Consensus       202 v~~~~l~~P~glav~~~~ly~tD~---~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          202 VIADDLPHPFGLTQYQDYIYWTDW---SRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEECCSCEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             EeeccCCCceEEEEECCEEEEecC---CCCEEEEEECCCCC
Confidence            444332222345556678877642   23578999876664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.41  E-value=5.5e-05  Score=85.65  Aligned_cols=233  Identities=10%  Similarity=0.013  Sum_probs=139.2

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-c
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q  234 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-~  234 (623)
                      .++|+.  ...|.++++++.  ....|...    ......+.+++.++.|+++....        ..|+++++++... .
T Consensus       397 ~Ll~an--~~~Ir~i~l~~~--~~~~l~~~----~~~~~gl~~d~~~~~lY~sD~~~--------~~I~~~~l~g~~~~~  460 (791)
T 3m0c_C          397 YLFFTN--RHEVRKMTLDRS--EYTSLIPN----LRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVS  460 (791)
T ss_dssp             EEEEEC--BSSEEEECTTSC--CCEEEECS----CSSEEEEEEETTTTEEEEEETTT--------TEEEEEEC-------
T ss_pred             cccccc--ccceeEeeccCC--cceeeecC----CCceEEEeecccCCeeEEeeccc--------eeEEEEeccCCCCCc
Confidence            466663  345999999865  45555443    22344577888888887765432        5799999986310 0


Q ss_pred             cceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          235 EPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       235 ~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      ..+.+. .+.....+.++.+.++.|||....       ...|+++++++..   ...++....    ..+..++..|.+.
T Consensus       461 ~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~-------~~~I~v~~ldG~~---~~~l~~~~l----~~P~gIaVDp~~g  526 (791)
T 3m0c_C          461 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVK---RKTLFRENG----SKPRAIVVDPVHG  526 (791)
T ss_dssp             -CEEEECSSCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETTSSS---EEEEEECTT----CCEEEEEEETTTT
T ss_pred             ceeEEEecCCCCcceeeeeecCCcEEEEecC-------CCeEEEEeCCCCe---EEEEEeCCC----CCcceEEEecCCC
Confidence            023333 244445567788899999998633       3469999998662   233333222    3455777888755


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~  393 (623)
                      .+|.++. .....|+++++++...+.+....  +..|      ..+.+-   +.++.|||+.  .+..+|+++++++...
T Consensus       527 ~LYwtD~-g~~~~I~~~~~dG~~~~~lv~~~--l~~P------~GLavD---~~~~~LYwaD--~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          527 FMYWTDW-GTPAKIKKGGLNGVDIYSLVTEN--IQWP------NGITLD---LLSGRLYWVD--SKLHSISSIDVNGGNR  592 (791)
T ss_dssp             EEEEEEC-SSSCEEEEEETTSCCEEEEECSS--CSCE------EEEEEE---TTTTEEEEEE--TTTTEEEEEETTSCSC
T ss_pred             CEEEecC-CCCCeEEEEecCCCceEEEEeCC--CCCc------eEEEEe---cCCCeEEEEe--CCCCcEEEEecCCCce
Confidence            4445665 22367999999877666665431  1111      223332   2578899885  4556899999998777


Q ss_pred             eecccCC---cceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          394 SLLDIPF---TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       394 ~~lt~~~---~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      +.+....   ..-..+...+++||++-.   ....|++++..+|+
T Consensus       593 ~~v~~~~~~l~~P~glav~~~~lYwtD~---~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          593 KTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS  634 (791)
T ss_dssp             EEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             EEEecCCCccCCCCEEEEeCCEEEEEEC---CCCEEEEEeCCCCc
Confidence            6654321   112244556777777643   23578888866664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.40  E-value=6.7e-05  Score=76.06  Aligned_cols=234  Identities=8%  Similarity=-0.064  Sum_probs=125.1

Q ss_pred             EEEEEeCC-----CCcEEEEeCCCCCCCcee-cCC--CCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          156 TVIFSNYK-----DQRLYKHSIDSKDSSPLP-ITP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       156 ~l~f~~~~-----~~~l~~~d~~~g~~~~~~-Lt~--~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      .+++.++.     ++.|.++|.+++  +... +..  ....-.....+..+  ++++++.+....        +.|.++|
T Consensus         3 g~~v~neg~~g~~~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~~~--------~~v~viD   70 (328)
T 3dsm_A            3 GLFITNEGNFQYSNATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVNNS--------HVIFAID   70 (328)
T ss_dssp             EEEEEECCCTTSCCBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEGGG--------TEEEEEE
T ss_pred             eEEEEecCCCCCCCceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEcCC--------CEEEEEE
Confidence            34555554     567999999876  3221 100  00000111223334  456666655432        6799999


Q ss_pred             cCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (623)
Q Consensus       228 l~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
                      +.+++.  +..+.. ........+|||| +|++....       ...|+++|..++..  ...+..+........+..+.
T Consensus        71 ~~t~~~--~~~i~~-~~~p~~i~~~~~g-~lyv~~~~-------~~~v~~iD~~t~~~--~~~i~~g~~~~~~~~p~~i~  137 (328)
T 3dsm_A           71 INTFKE--VGRITG-FTSPRYIHFLSDE-KAYVTQIW-------DYRIFIINPKTYEI--TGYIECPDMDMESGSTEQMV  137 (328)
T ss_dssp             TTTCCE--EEEEEC-CSSEEEEEEEETT-EEEEEEBS-------CSEEEEEETTTTEE--EEEEECTTCCTTTCBCCCEE
T ss_pred             CcccEE--EEEcCC-CCCCcEEEEeCCC-eEEEEECC-------CCeEEEEECCCCeE--EEEEEcCCccccCCCcceEE
Confidence            998872  244532 2333445789998 66555411       34599999887621  12222222100001344566


Q ss_pred             eCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC--------
Q 006979          308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG--------  379 (623)
Q Consensus       308 ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g--------  379 (623)
                      + .+ +.+|+++. .....|.++|+.+++.....+...   .|      ..+.+.    .++.+|+....+.        
T Consensus       138 ~-~~-~~lyv~~~-~~~~~v~viD~~t~~~~~~i~~g~---~p------~~i~~~----~dG~l~v~~~~~~~~~~~~~~  201 (328)
T 3dsm_A          138 Q-YG-KYVYVNCW-SYQNRILKIDTETDKVVDELTIGI---QP------TSLVMD----KYNKMWTITDGGYEGSPYGYE  201 (328)
T ss_dssp             E-ET-TEEEEEEC-TTCCEEEEEETTTTEEEEEEECSS---CB------CCCEEC----TTSEEEEEBCCBCTTCSSCBC
T ss_pred             E-EC-CEEEEEcC-CCCCEEEEEECCCCeEEEEEEcCC---Cc------cceEEc----CCCCEEEEECCCccCCccccC
Confidence            6 34 44445554 114479999999887544332211   11      223332    2345666654320        


Q ss_pred             eEEEEEEeCCCCcee-ecccCCc-ceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          380 RSYLGILDDFGHSLS-LLDIPFT-DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       380 ~~~L~~~d~~~~~~~-~lt~~~~-~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ...|+++|.+++++. .+..+.. ....+  +++++++|+...      .++++|+++++.
T Consensus       202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~------~v~~~d~~t~~~  256 (328)
T 3dsm_A          202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN------DIWRMPVEADRV  256 (328)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS------SEEEEETTCSSC
T ss_pred             CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc------EEEEEECCCCce
Confidence            268999999888765 4443321 22333  667887777532      799999988764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.40  E-value=3.8e-05  Score=78.12  Aligned_cols=104  Identities=12%  Similarity=0.031  Sum_probs=70.4

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~  234 (623)
                      .++++...++.|.++|+.++ .....+...    ........|+| +++.|+....+         ..|.++|+.+++. 
T Consensus        86 ~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~-  150 (366)
T 3k26_A           86 PLLAVAGSRGIIRIINPITM-QCIKHYVGH----GNAINELKFHPRDPNLLLSVSKD---------HALRLWNIQTDTL-  150 (366)
T ss_dssp             EEEEEEETTCEEEEECTTTC-CEEEEEESC----CSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTTTEE-
T ss_pred             CEEEEecCCCEEEEEEchhc-eEeeeecCC----CCcEEEEEECCCCCCEEEEEeCC---------CeEEEEEeecCeE-
Confidence            56667777888999999876 233444422    34567788999 88887766543         4588899988762 


Q ss_pred             cceec---ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC
Q 006979          235 EPKVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN  283 (623)
Q Consensus       235 ~~~~l---~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~  283 (623)
                       ...+   ......+....|+|||++|+....+.        .|.++|+..+
T Consensus       151 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~  193 (366)
T 3k26_A          151 -VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH--------SLKLWRINSK  193 (366)
T ss_dssp             -EEEECSTTSCSSCEEEEEECTTSSEEEEEETTS--------CEEEEESCSH
T ss_pred             -EEEecccccccCceeEEEECCCCCEEEEecCCC--------CEEEEECCCC
Confidence             2233   23334566788999999888766332        3788888754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.40  E-value=1.6e-05  Score=80.46  Aligned_cols=226  Identities=10%  Similarity=0.020  Sum_probs=120.6

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC-CCCCcc----c-----eeeee-cCCceEEEeC--C
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAV----R-----TTAQE-YGGGAFRIFG--D  155 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~-p~~~~~----r-----~~~~~-~g~~~~~~s~--d  155 (623)
                      ..++++.+++++.++|++..   +++  |++++..++ ..+... +..+.-    .     ..... .....+++++  +
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~---~~~--i~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g   92 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQ---DGR--VIKYEGPNS-GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN   92 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECT---TSE--EEEECCTTT-CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred             CCceEEEEcCCCCEEEEEcC---CCe--EEEECCCCC-ceEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence            45678899876677888754   233  667765521 222111 111000    0     00000 0012345553  4


Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCC-CCCEEEEEEeccCCC---------CCCceeEEE
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDP-RFNRYVTVREDRRQD---------ALNSTTEIV  224 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sP-dG~~l~~v~~~~~~~---------~~~~~~~L~  224 (623)
                      .|++.+.. +.|++++.+++  ..+.+... .+.+..+.++..++| +|+ |++........         .......|+
T Consensus        93 ~l~v~d~~-~~i~~~d~~~g--~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  168 (322)
T 2fp8_A           93 QLYIVDCY-YHLSVVGSEGG--HATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLI  168 (322)
T ss_dssp             EEEEEETT-TEEEEECTTCE--ECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred             cEEEEECC-CCEEEEeCCCC--EEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEE
Confidence            67776544 44999998765  44444322 111112456788999 996 43333211000         001237899


Q ss_pred             EEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  304 (623)
                      ++|.++++   .+.+..+.......+|+|||++|++....       ..+|+++++++... .....+....    . +.
T Consensus       169 ~~d~~~~~---~~~~~~~~~~p~gia~~~dg~~lyv~d~~-------~~~I~~~~~~~~~~-~~~~~~~~~~----g-P~  232 (322)
T 2fp8_A          169 KYDPSTKE---TTLLLKELHVPGGAEVSADSSFVLVAEFL-------SHQIVKYWLEGPKK-GTAEVLVKIP----N-PG  232 (322)
T ss_dssp             EEETTTTE---EEEEEEEESCCCEEEECTTSSEEEEEEGG-------GTEEEEEESSSTTT-TCEEEEEECS----S-EE
T ss_pred             EEeCCCCE---EEEeccCCccCcceEECCCCCEEEEEeCC-------CCeEEEEECCCCcC-CccceEEeCC----C-CC
Confidence            99998876   44444333445567899999988877532       34699999875311 1222222222    2 45


Q ss_pred             CceeCCCCcEEEEEeCC--------CCeeeEEEEecCCCeEEEEe
Q 006979          305 EPKWSSKGELFFVTDRK--------NGFWNLHKWIESNNEVLAIY  341 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~--------~g~~~L~~~d~~~~~~~~l~  341 (623)
                      ....++||.+| +++..        .....|+++|+++...+.+.
T Consensus       233 gi~~d~~G~l~-va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~  276 (322)
T 2fp8_A          233 NIKRNADGHFW-VSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP  276 (322)
T ss_dssp             EEEECTTSCEE-EEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE
T ss_pred             CeEECCCCCEE-EEecCcccccccCCCccEEEEECCCCCEEEEEE
Confidence            67888999754 44431        11467999998654444443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.40  E-value=3.6e-05  Score=87.16  Aligned_cols=195  Identities=11%  Similarity=0.071  Sum_probs=119.7

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCC--CCceecCC-CCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKD--SSPLPITP-DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~--~~~~~Lt~-~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      .+.|||++...+.|+++++++..  ...+.+.. .    ......+++++.++.|+++....        ..|+++++++
T Consensus       435 ~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~----l~~P~GLAvD~~~~~LY~tD~~~--------~~I~v~~ldG  502 (791)
T 3m0c_C          435 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGLAVDWIHSNIYWTDSVL--------GTVSVADTKG  502 (791)
T ss_dssp             TTEEEEEETTTTEEEEEEC--------CEEEECSS----CSCCCEEEEETTTTEEEEEETTT--------TEEEEEETTS
T ss_pred             CCeeEEeeccceeEEEEeccCCCCCcceeEEEecC----CCCcceeeeeecCCcEEEEecCC--------CeEEEEeCCC
Confidence            45899998888889999997520  01222222 2    12334577888898888765422        6799999998


Q ss_pred             CCcccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979          231 QNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (623)
Q Consensus       231 g~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws  309 (623)
                      ..   .+.|.. ......+.++.|.+.+|||..|..      ...|+++++++..   ...++...-    ..+..++.+
T Consensus       503 ~~---~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~------~~~I~~~~~dG~~---~~~lv~~~l----~~P~GLavD  566 (791)
T 3m0c_C          503 VK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNGVD---IYSLVTENI----QWPNGITLD  566 (791)
T ss_dssp             SS---EEEEEECTTCCEEEEEEETTTTEEEEEECSS------SCEEEEEETTSCC---EEEEECSSC----SCEEEEEEE
T ss_pred             Ce---EEEEEeCCCCCcceEEEecCCCCEEEecCCC------CCeEEEEecCCCc---eEEEEeCCC----CCceEEEEe
Confidence            76   455543 333344567999988999997543      2469999998762   233333222    345567777


Q ss_pred             CCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC
Q 006979          310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (623)
Q Consensus       310 ~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~  389 (623)
                      +++..+|+++.  +...|+++++++...+.+......+..|      ..+.+     .++.|||+.  .+...|+++|..
T Consensus       567 ~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~~~~~~l~~P------~glav-----~~~~lYwtD--~~~~~I~~~dk~  631 (791)
T 3m0c_C          567 LLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHP------FSLAV-----FEDKVFWTD--IINEAIFSANRL  631 (791)
T ss_dssp             TTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSE------EEEEE-----ETTEEEEEE--TTTTEEEEEETT
T ss_pred             cCCCeEEEEeC--CCCcEEEEecCCCceEEEecCCCccCCC------CEEEE-----eCCEEEEEE--CCCCEEEEEeCC
Confidence            76664444565  4567999999887666665432222111      12233     456888876  345678888865


Q ss_pred             CC
Q 006979          390 GH  391 (623)
Q Consensus       390 ~~  391 (623)
                      +|
T Consensus       632 tG  633 (791)
T 3m0c_C          632 TG  633 (791)
T ss_dssp             TC
T ss_pred             CC
Confidence            55

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.39  E-value=2.5e-05  Score=82.40  Aligned_cols=204  Identities=11%  Similarity=0.045  Sum_probs=115.6

Q ss_pred             cCCceEEEeCC--EEEEEeCCCCcEEEEeCCCCC---------CCceecCCCCCCCCeeecceeeCCCCC-EEEEEEecc
Q 006979          145 YGGGAFRIFGD--TVIFSNYKDQRLYKHSIDSKD---------SSPLPITPDYGEPLVSYADGIFDPRFN-RYVTVREDR  212 (623)
Q Consensus       145 ~g~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~---------~~~~~Lt~~~~~~~~~~~d~~~sPdG~-~l~~v~~~~  212 (623)
                      ..+.+..++++  .++++...++.|+++++....         .....+...    ........|+|+++ .|+....+ 
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~d-  203 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH----QKEGYGLSWNPNLNGYLLSASDD-  203 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC----SSCCCCEEECTTSTTEEEEECTT-
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC----CCCeEEEEeCCCCCCeEEEEeCC-
Confidence            34566777775  577777778889999986410         111222221    22345688999998 55543322 


Q ss_pred             CCCCCCceeEEEEEEcCCCCcc-----cceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCcee
Q 006979          213 RQDALNSTTEIVAIALNGQNIQ-----EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY  287 (623)
Q Consensus       213 ~~~~~~~~~~L~~idl~~g~~~-----~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~  287 (623)
                              +.|.++|+..+...     ....+......+....|+|++..+++....       ...|+++|+..+....
T Consensus       204 --------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~-------dg~i~i~d~~~~~~~~  268 (430)
T 2xyi_A          204 --------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD-------DQKLMIWDTRNNNTSK  268 (430)
T ss_dssp             --------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET-------TSEEEEEETTCSCSSS
T ss_pred             --------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC-------CCeEEEEECCCCCCCc
Confidence                    45888888774210     012222233345567899955545444422       2358899988653111


Q ss_pred             eeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC-e-EEEEeecccccccccccccCcceeEEee
Q 006979          288 KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN-E-VLAIYSLDAEFSRPLWVFGINSYEIIQS  364 (623)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~-~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~  364 (623)
                      ....+....    ..+..+.|+|+++ +++.... +|.  |..+|.... . ...+......+....|.+          
T Consensus       269 ~~~~~~~~~----~~v~~i~~~p~~~~~l~tg~~-dg~--v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp----------  331 (430)
T 2xyi_A          269 PSHTVDAHT----AEVNCLSFNPYSEFILATGSA-DKT--VALWDLRNLKLKLHSFESHKDEIFQVQWSP----------  331 (430)
T ss_dssp             CSEEEECCS----SCEEEEEECSSCTTEEEEEET-TSE--EEEEETTCTTSCSEEEECCSSCEEEEEECS----------
T ss_pred             ceeEeecCC----CCeEEEEeCCCCCCEEEEEeC-CCe--EEEEeCCCCCCCeEEeecCCCCEEEEEECC----------
Confidence            222333333    4567889999998 7766665 455  555565542 2 333333333333334433          


Q ss_pred             cCCCCEEEEEEEECCeEEEEEEe
Q 006979          365 HGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       365 s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                        +++.++++...++.-.||-+.
T Consensus       332 --~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          332 --HNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             --SCTTEEEEEETTSCCEEEEGG
T ss_pred             --CCCCEEEEEeCCCcEEEEeCC
Confidence              777778777777776666443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.38  E-value=1.7e-06  Score=97.34  Aligned_cols=212  Identities=10%  Similarity=0.056  Sum_probs=123.3

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCC---CCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKA---GDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK  163 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~---gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~  163 (623)
                      ...+.++.|++ ++.|||.+...   ++  |++++..+   +.....++....      ..-.+.++.+..+.||+++..
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~---~~--I~~~~~~g~~~~~~~~~~i~~~~------~~P~glavD~~~g~LY~tD~~  473 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQ---RM--ICSTQLDRAHGVSSYDTVISRDI------QAPDGLAVDWIHSNIYWTDSV  473 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTT---TS--BEEEESCCCCC-CCCCCBCCSCC--------CCCEECCCSSSBCEECCTT
T ss_pred             CcceEEEccccccCeEEEEecCC---Ce--EEEEecCCCCCCcceEEEEeCCC------CCcceEEEEeeCCcEEEEecc
Confidence            34567889998 89999998653   33  55555442   112222222211      011122233334578888777


Q ss_pred             CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cC
Q 006979          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SG  242 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~  242 (623)
                      .++|+++++++.  ..+.+....   .....+++++|++++|+++....       ...|+++++++..   .+.+. ..
T Consensus       474 ~~~I~v~d~dg~--~~~~l~~~~---~~~P~giavDp~~g~ly~td~~~-------~~~I~~~~~dG~~---~~~l~~~~  538 (699)
T 1n7d_A          474 LGTVSVADTKGV--KRKTLFREQ---GSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLNGVD---IYSLVTEN  538 (699)
T ss_dssp             TSCEEEEBSSSC--CEEEECCCS---SCCCCCEECCSSSSCCEECCCSS-------SCCEEBCCSSSCC---CCEESCSS
T ss_pred             CCeEEEEecCCC--ceEEEEeCC---CCCcceEEEccCCCcEEEcccCC-------CCeEEEEeCCCCC---eeEEEeCC
Confidence            788999999865  444443320   12345678999888777754321       1569999998765   33443 33


Q ss_pred             CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCC
Q 006979          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN  322 (623)
Q Consensus       243 ~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~  322 (623)
                      ..+..+.+|+|++++|||+...       ...|+++++++.    .++.+...... ...+..+....+ .+|| ++.  
T Consensus       539 l~~PnGlavd~~~~~LY~aD~~-------~~~I~~~d~dG~----~~~~~~~~~~~-~~~P~glavd~~-~lyw-td~--  602 (699)
T 1n7d_A          539 IQWPNGITLDLLSGRLYWVDSK-------LHSISSIDVNGG----NRKTILEDEKR-LAHPFSLAVFED-KVFW-TDI--  602 (699)
T ss_dssp             CSSCCCEEECTTTCCEEEEETT-------TTEEEEECSSSS----CCEEECCCSSS-CSSCCCCEEETT-EEEE-ECS--
T ss_pred             CCCccEEEEeccCCEEEEEecC-------CCeEEEEccCCC----ceEEEEecCCc-CCCceEeEEECC-EEEE-EeC--
Confidence            4456678899999999998632       346999998765    23333321100 022334444332 2554 455  


Q ss_pred             CeeeEEEEecCCCeEEEEe
Q 006979          323 GFWNLHKWIESNNEVLAIY  341 (623)
Q Consensus       323 g~~~L~~~d~~~~~~~~l~  341 (623)
                      +...|.++++.+++...+.
T Consensus       603 ~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          603 INEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             TTTCEEEEETTTEEEEECC
T ss_pred             CCCeEEEEEccCCCceEEe
Confidence            4457999998777655443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.38  E-value=1.7e-05  Score=87.14  Aligned_cols=201  Identities=8%  Similarity=0.051  Sum_probs=118.3

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC----CcccceecccCCCc-ccceeeCC--CCCEEEEEEe
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ----NIQEPKVLVSGSDF-YAFPRMDP--RGERMAWIEW  263 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g----~~~~~~~l~~~~~~-~~~p~wSP--DG~~la~~~~  263 (623)
                      .......|||||++|++...          ..+.++|++++    +.  ...+....+. +...+|||  ||++|+....
T Consensus        19 ~~v~~~~~spdg~~l~~~~~----------~~v~v~~~~~~~~~~~~--~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~   86 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPCG----------KSAFVRCLDDGDSKVPP--VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE   86 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEET----------TEEEEEECCSSCCSSCS--EEEECTTTTSCEEEEEECSSTTCCEEEEEET
T ss_pred             CceeEEEECCCCCEEEEecC----------CeEEEEECCCCCCcccc--ceEEecCCCceEEEEEECcCCCCCEEEEecC
Confidence            34567889999999988762          45888898876    41  4455555555 67789999  9999887653


Q ss_pred             cCCCCCCCceEEEEEEecCC------CceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCe
Q 006979          264 HHPNMPWDKAELWVGYISEN------GDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       264 ~~~~~p~~~~~L~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                      +        ..|.++++..+      .. .....+....    ..+....|+|||+ ++...........|+.+|. +..
T Consensus        87 d--------g~v~vw~~~~~~~~~~~~~-~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-~~~  152 (615)
T 1pgu_A           87 S--------GKVIVWGWTFDKESNSVEV-NVKSEFQVLA----GPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNS  152 (615)
T ss_dssp             T--------SEEEEEEEEEEGGGTEEEE-EEEEEEECCS----SCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-CCE
T ss_pred             C--------CEEEEEeCCCCcccccccc-cccchhhccc----ccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-CCc
Confidence            3        24777777533      11 1222333333    4677889999999 5555443233467777772 333


Q ss_pred             EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-ecccCCc---ceEee--eec-
Q 006979          337 VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFT---DIDNI--TLG-  409 (623)
Q Consensus       337 ~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~~~~---~v~~~--~~~-  409 (623)
                      ...+......+...         .|.   |+++.++++...++.-++  +|..+++.. .+.....   .+..+  +++ 
T Consensus       153 ~~~~~~~~~~v~~~---------~~~---~~~~~~l~~~~~d~~v~v--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (615)
T 1pgu_A          153 LGEVSGHSQRINAC---------HLK---QSRPMRSMTVGDDGSVVF--YQGPPFKFSASDRTHHKQGSFVRDVEFSPDS  218 (615)
T ss_dssp             EEECCSCSSCEEEE---------EEC---SSSSCEEEEEETTTEEEE--EETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred             ceeeecCCccEEEE---------EEC---CCCCcEEEEEeCCCcEEE--EeCCCcceeeeecccCCCCceEEEEEECCCC
Confidence            33333222222222         332   266656666666666555  466655443 3443333   45555  566 


Q ss_pred             CCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          410 NDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       410 ~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ++.++ ++..   ...|+.+++.+++
T Consensus       219 ~~~l~-~~~~---dg~i~vwd~~~~~  240 (615)
T 1pgu_A          219 GEFVI-TVGS---DRKISCFDGKSGE  240 (615)
T ss_dssp             CCEEE-EEET---TCCEEEEETTTCC
T ss_pred             CCEEE-EEeC---CCeEEEEECCCCC
Confidence            55444 4432   2467888877765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.37  E-value=0.00019  Score=73.44  Aligned_cols=268  Identities=10%  Similarity=0.019  Sum_probs=141.6

Q ss_pred             cCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           87 ASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ....+..+.|+|++.....-.   ++|...+|.....   .....+..        +.....+..++++ ..+.+...++
T Consensus        63 H~~~V~~~~~s~d~~~l~s~s---~Dg~v~vWd~~~~---~~~~~~~~--------~~~~v~~~~~sp~g~~lasg~~d~  128 (354)
T 2pbi_B           63 HGNKVLCMDWCKDKRRIVSSS---QDGKVIVWDSFTT---NKEHAVTM--------PCTWVMACAYAPSGCAIACGGLDN  128 (354)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTC---CEEEEEEC--------SSSCCCEEEECTTSSEEEEESTTS
T ss_pred             CCCeEEEEEECCCCCEEEEEe---CCCeEEEEECCCC---CcceEEec--------CCCCEEEEEECCCCCEEEEeeCCC
Confidence            344567788888333333332   2577777754322   21111111        1111344555555 4556666778


Q ss_pred             cEEEEeCCCCCCC-----ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc
Q 006979          166 RLYKHSIDSKDSS-----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (623)
Q Consensus       166 ~l~~~d~~~g~~~-----~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~  240 (623)
                      .+.++++......     ...+...    ........|+|+++.|+....+         ..+.++|+.+++.  ...+.
T Consensus       129 ~i~v~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~t~s~D---------~~v~lwd~~~~~~--~~~~~  193 (354)
T 2pbi_B          129 KCSVYPLTFDKNENMAAKKKSVAMH----TNYLSACSFTNSDMQILTASGD---------GTCALWDVESGQL--LQSFH  193 (354)
T ss_dssp             EEEEEECCCCTTCCSGGGCEEEEEC----SSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCE--EEEEE
T ss_pred             CEEEEEEeccccccccccceeeecc----CCcEEEEEEeCCCCEEEEEeCC---------CcEEEEeCCCCeE--EEEEc
Confidence            8888877543000     1111111    2234567899999988876554         5688889988762  23343


Q ss_pred             cCCCcccceeeCC--CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEE
Q 006979          241 SGSDFYAFPRMDP--RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT  318 (623)
Q Consensus       241 ~~~~~~~~p~wSP--DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~  318 (623)
                      .....+....|+|  +|+.|+-...|.        .|.++|+..+.   ....+.+..    ..+....|+|+|++++..
T Consensus       194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg--------~v~~wd~~~~~---~~~~~~~h~----~~v~~v~~~p~~~~l~s~  258 (354)
T 2pbi_B          194 GHGADVLCLDLAPSETGNTFVSGGCDK--------KAMVWDMRSGQ---CVQAFETHE----SDVNSVRYYPSGDAFASG  258 (354)
T ss_dssp             CCSSCEEEEEECCCSSCCEEEEEETTS--------CEEEEETTTCC---EEEEECCCS----SCEEEEEECTTSSEEEEE
T ss_pred             CCCCCeEEEEEEeCCCCCEEEEEeCCC--------eEEEEECCCCc---EEEEecCCC----CCeEEEEEeCCCCEEEEE
Confidence            3333344456766  678777665333        38888988763   333444444    456788999999855555


Q ss_pred             eCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc-eeecc
Q 006979          319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLD  397 (623)
Q Consensus       319 ~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~-~~~lt  397 (623)
                      .. ++.  +..+|+.+++...+.......      .+.....|.   ++++. +++...++.-+|  +|+.+++ +..+.
T Consensus       259 s~-D~~--v~lwd~~~~~~~~~~~~~~~~------~~~~~~~~s---~~g~~-l~~g~~d~~i~v--wd~~~~~~~~~l~  323 (354)
T 2pbi_B          259 SD-DAT--CRLYDLRADREVAIYSKESII------FGASSVDFS---LSGRL-LFAGYNDYTINV--WDVLKGSRVSILF  323 (354)
T ss_dssp             ET-TSC--EEEEETTTTEEEEEECCTTCC------SCEEEEEEC---TTSSE-EEEEETTSCEEE--EETTTCSEEEEEC
T ss_pred             eC-CCe--EEEEECCCCcEEEEEcCCCcc------cceeEEEEe---CCCCE-EEEEECCCcEEE--EECCCCceEEEEE
Confidence            44 454  445566666544333221100      011122333   26554 444545665444  5765554 34444


Q ss_pred             cCCcceEee--eecCCEE
Q 006979          398 IPFTDIDNI--TLGNDCL  413 (623)
Q Consensus       398 ~~~~~v~~~--~~~~~~~  413 (623)
                      .....+..+  ++++..+
T Consensus       324 ~h~~~v~~l~~spdg~~l  341 (354)
T 2pbi_B          324 GHENRVSTLRVSPDGTAF  341 (354)
T ss_dssp             CCSSCEEEEEECTTSSCE
T ss_pred             CCCCcEEEEEECCCCCEE
Confidence            444445555  5555543

>1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A

Probab=98.37  E-value=1.4e-06  Score=86.56  Aligned_cols=105  Identities=17%  Similarity=0.074  Sum_probs=68.7

Q ss_pred             CCEEEEecCCCCCccc-CcCCHHhHHHHcC--ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979          495 PPLLVKSHGGPTSEAR-GILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~-~~~~~~~~~~a~~--G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~  571 (623)
                      .| ||++||....... ..|...+.+++++  ||.|+.+|+ |.|........     +-....+++...++++......
T Consensus         6 ~p-vVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~-G~g~s~~~~~~-----~~~~~~~~~~~~~~~l~~~~~l   78 (279)
T 1ei9_A            6 LP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEI-GKTLREDVENS-----FFLNVNSQVTTVCQILAKDPKL   78 (279)
T ss_dssp             CC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCC-SSSHHHHHHHH-----HHSCHHHHHHHHHHHHHSCGGG
T ss_pred             Cc-EEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEe-CCCCccccccc-----cccCHHHHHHHHHHHHHhhhhc
Confidence            45 7889998544322 3677788888875  889999997 64422111110     1012234444555555543212


Q ss_pred             CCCceEEEEcChHHHHHHHHh-cCCCc-eeEEEecccC
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-AFRDT-FKAGASLYGV  607 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~~~~~-f~a~v~~~g~  607 (623)
                       .+++.++||||||.++..++ .+|+. ++..|+..+.
T Consensus        79 -~~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~p  115 (279)
T 1ei9_A           79 -QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQ  115 (279)
T ss_dssp             -TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESCC
T ss_pred             -cCCEEEEEECHHHHHHHHHHHHcCCcccceEEEecCc
Confidence             27999999999999999999 78884 9999977653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.37  E-value=8e-05  Score=75.03  Aligned_cols=243  Identities=9%  Similarity=-0.021  Sum_probs=127.3

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcE
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL  167 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l  167 (623)
                      ..+..+.++|++.....-..   ++...+|....+   +....+.        -|...+.+..++++ .++++...++.|
T Consensus        66 ~~v~~~~~s~dg~~l~s~s~---D~~v~~wd~~~~---~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~s~D~~i  131 (319)
T 3frx_A           66 HIVQDCTLTADGAYALSASW---DKTLRLWDVATG---ETYQRFV--------GHKSDVMSVDIDKKASMIISGSRDKTI  131 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEET---TSEEEEEETTTT---EEEEEEE--------CCSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             ccEEEEEECCCCCEEEEEeC---CCEEEEEECCCC---CeeEEEc--------cCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            34456778873333333322   466666654322   2211111        01222345556655 566677778889


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCeeecceeeCCC------CCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc
Q 006979          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPR------FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS  241 (623)
Q Consensus       168 ~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPd------G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~  241 (623)
                      .++|+.+.  ....+...    ........++|+      +..++....+         ..+.+.|+.+++.  ...+..
T Consensus       132 ~vwd~~~~--~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~--~~~~~~  194 (319)
T 3frx_A          132 KVWTIKGQ--CLATLLGH----NDWVSQVRVVPNEKADDDSVTIISAGND---------KMVKAWNLNQFQI--EADFIG  194 (319)
T ss_dssp             EEEETTSC--EEEEECCC----SSCEEEEEECCC------CCEEEEEETT---------SCEEEEETTTTEE--EEEECC
T ss_pred             EEEECCCC--eEEEEecc----CCcEEEEEEccCCCCCCCccEEEEEeCC---------CEEEEEECCcchh--heeecC
Confidence            99998754  33444332    233455677774      3355544433         4578889887651  223333


Q ss_pred             CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCC
Q 006979          242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK  321 (623)
Q Consensus       242 ~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~  321 (623)
                      ....+....|||||++|+-...|        ..|.+.|+..+.   ....+...     ..+....|+|||.++..... 
T Consensus       195 h~~~v~~~~~sp~g~~l~s~~~d--------g~i~iwd~~~~~---~~~~~~~~-----~~v~~~~~sp~~~~la~~~~-  257 (319)
T 3frx_A          195 HNSNINTLTASPDGTLIASAGKD--------GEIMLWNLAAKK---AMYTLSAQ-----DEVFSLAFSPNRYWLAAATA-  257 (319)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETT--------CEEEEEETTTTE---EEEEEECC-----SCEEEEEECSSSSEEEEEET-
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCc---EEEEecCC-----CcEEEEEEcCCCCEEEEEcC-
Confidence            34455667899999988866533        348888988762   22333332     34567899999985555544 


Q ss_pred             CCeeeEEEEecCCCeEE-EEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          322 NGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       322 ~g~~~L~~~d~~~~~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                       +...+|  +.+.+... .+.+....... .-......+.|.   |+++.|+ +...+|.-+||.+.
T Consensus       258 -~~i~v~--~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s---pdg~~l~-sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          258 -TGIKVF--SLDPQYLVDDLRPEFAGYSK-AAEPHAVSLAWS---ADGQTLF-AGYTDNVIRVWQVM  316 (319)
T ss_dssp             -TEEEEE--EETTEEEEEEECCCCTTCCG-GGCCCEEEEEEC---TTSSEEE-EEETTSCEEEEEEE
T ss_pred             -CCcEEE--EeCcCeeeeccCcccccccc-CcCcceeEEEEC---CCCCEEE-EeecCceEEEEEEe
Confidence             333444  44444322 22211110000 000011123333   3776655 45567777777554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.36  E-value=3.9e-05  Score=76.92  Aligned_cols=205  Identities=10%  Similarity=0.006  Sum_probs=110.3

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCC--C
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKD--Q  165 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~--~  165 (623)
                      ..++++.|++++.+||.+...   ++  |++++..  ++........    ..     ...++++++ .+++.+...  .
T Consensus        32 ~~pegia~~~~g~lyv~d~~~---~~--I~~~d~~--g~~~~~~~~~----~~-----p~gia~~~dG~l~vad~~~~~~   95 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEV---GE--IVSITPD--GNQQIHATVE----GK-----VSGLAFTSNGDLVATGWNADSI   95 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTT---TE--EEEECTT--CCEEEEEECS----SE-----EEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCC---Ce--EEEECCC--CceEEEEeCC----CC-----ceeEEEcCCCcEEEEeccCCcc
Confidence            457889998866799998542   33  7777765  2322222111    00     123445544 676665432  2


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeec-ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccee----c-
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYA-DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV----L-  239 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~-d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~----l-  239 (623)
                      +|++++..++  ..+.+....   ..++. .....+++ .+++ .+..       ...||++|.++++.. +..    + 
T Consensus        96 ~v~~~d~~~g--~~~~~~~~~---~~~~~~g~~~~~~~-~~~v-~d~~-------~g~i~~~d~~~~~~~-v~~~~~~~~  160 (306)
T 2p4o_A           96 PVVSLVKSDG--TVETLLTLP---DAIFLNGITPLSDT-QYLT-ADSY-------RGAIWLIDVVQPSGS-IWLEHPMLA  160 (306)
T ss_dssp             EEEEEECTTS--CEEEEEECT---TCSCEEEEEESSSS-EEEE-EETT-------TTEEEEEETTTTEEE-EEEECGGGS
T ss_pred             eEEEEcCCCC--eEEEEEeCC---CccccCcccccCCC-cEEE-EECC-------CCeEEEEeCCCCcEe-EEEECCccc
Confidence            4888887776  554443221   12222 23334444 4444 3311       157999998765200 110    0 


Q ss_pred             --ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEE
Q 006979          240 --VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV  317 (623)
Q Consensus       240 --~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~  317 (623)
                        .....+...-..+|||++|++....       ..+|++++++..+.+.....+...     ..+..+..++||++ |+
T Consensus       161 ~~~~~~~~~~pngis~dg~~lyv~d~~-------~~~I~~~~~~~~g~~~~~~~~~~~-----~~P~gi~vd~dG~l-~v  227 (306)
T 2p4o_A          161 RSNSESVFPAANGLKRFGNFLYVSNTE-------KMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNL-YG  227 (306)
T ss_dssp             CSSTTCCSCSEEEEEEETTEEEEEETT-------TTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCE-EE
T ss_pred             cccccCCCCcCCCcCcCCCEEEEEeCC-------CCEEEEEEeCCCCCCCccEEEecc-----CCCCCeEECCCCCE-EE
Confidence              0011121111249999999877532       446999999763332233333221     23457899999975 56


Q ss_pred             EeCCCCeeeEEEEecCCCeEEEE
Q 006979          318 TDRKNGFWNLHKWIESNNEVLAI  340 (623)
Q Consensus       318 ~~~~~g~~~L~~~d~~~~~~~~l  340 (623)
                      ++.  +..+|.++|++ ++...+
T Consensus       228 a~~--~~~~V~~~~~~-G~~~~~  247 (306)
T 2p4o_A          228 ATH--IYNSVVRIAPD-RSTTII  247 (306)
T ss_dssp             ECB--TTCCEEEECTT-CCEEEE
T ss_pred             EeC--CCCeEEEECCC-CCEEEE
Confidence            665  44578899986 444333

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.35  E-value=1.8e-05  Score=83.28  Aligned_cols=159  Identities=8%  Similarity=0.047  Sum_probs=87.9

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCC------------ceecCCCCCCCC----------eeecceeeCCCC-
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS------------PLPITPDYGEPL----------VSYADGIFDPRF-  202 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~------------~~~Lt~~~~~~~----------~~~~d~~~sPdG-  202 (623)
                      +.+..++++ .++++...++.|.++++.++  .            ...+...  .+.          .......|+|++ 
T Consensus        31 V~~v~~s~~g~~la~g~~dg~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~h--~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           31 ISTVEFNHSGELLATGDKGGRVVIFQQEQE--NKIQSHSRGEYNVYSTFQSH--EPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECC-------CCCCCCEEEEEEEECC--CCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEecCC--CCCCcccccceeEecccccc--cccccccccccccCceEEEEEcCCCC
Confidence            445566655 45556667888999998765  2            1222211  000          335678899998 


Q ss_pred             -CEEEEEEeccCCCCCCceeEEEEEEcCCCCcc-------------------------------------cceec-ccCC
Q 006979          203 -NRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-------------------------------------EPKVL-VSGS  243 (623)
Q Consensus       203 -~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~-------------------------------------~~~~l-~~~~  243 (623)
                       ..++....+         ..|.++|+.++...                                     ..+.+ ....
T Consensus       107 ~~~l~s~s~d---------~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  177 (447)
T 3dw8_B          107 AAQFLLSTND---------KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT  177 (447)
T ss_dssp             SSEEEEEECS---------SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred             cceEEEeCCC---------CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence             677666544         23455555432200                                     00011 1223


Q ss_pred             CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE-------EcCCCCCccccCcCceeCCCC-cEE
Q 006979          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-------VAGFDPTIVESPTEPKWSSKG-ELF  315 (623)
Q Consensus       244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ws~DG-~l~  315 (623)
                      ..+...+|+|||++|+.. .|        ..|.++|+...+.  ....       +.+..    ..+....|+|+| +++
T Consensus       178 ~~v~~~~~~~~~~~l~s~-~d--------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l  242 (447)
T 3dw8_B          178 YHINSISINSDYETYLSA-DD--------LRINLWHLEITDR--SFNIVDIKPANMEELT----EVITAAEFHPNSCNTF  242 (447)
T ss_dssp             SCCCEEEECTTSSEEEEE-CS--------SEEEEEETTEEEE--EEEEEECCCSSGGGCC----CCEEEEEECSSCTTEE
T ss_pred             cceEEEEEcCCCCEEEEe-CC--------CeEEEEECCCCCc--eeeeeecccccccccC----cceEEEEECCCCCcEE
Confidence            345567899999988754 22        2488888874321  1111       12222    456788999999 666


Q ss_pred             EEEeCCCCeeeEEEEecCCCe
Q 006979          316 FVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       316 ~~~~~~~g~~~L~~~d~~~~~  336 (623)
                      +.... ++  .|..+|..+++
T Consensus       243 ~s~~~-dg--~i~iwd~~~~~  260 (447)
T 3dw8_B          243 VYSSS-KG--TIRLCDMRASA  260 (447)
T ss_dssp             EEEET-TS--CEEEEETTTCS
T ss_pred             EEEeC-CC--eEEEEECcCCc
Confidence            55554 45  45556766665

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.35  E-value=7e-05  Score=78.58  Aligned_cols=239  Identities=9%  Similarity=0.006  Sum_probs=131.5

Q ss_pred             eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      ...|+.+.++.+. .++.|+++|+.+|  ...++.... .....+...+|+|||++|+....+         ..|.++|+
T Consensus       110 ~l~wS~~n~lAvg-ld~tV~lWd~~tg--~~~~~~~~~-~~~~~V~sv~fspdg~~lasgs~D---------g~v~iWd~  176 (420)
T 4gga_A          110 LVDWSSGNVLAVA-LDNSVYLWSASSG--DILQLLQME-QPGEYISSVAWIKEGNYLAVGTSS---------AEVQLWDV  176 (420)
T ss_dssp             CEEECTTSEEEEE-ETTEEEEEETTTC--CEEEEEECC-STTCCEEEEEECTTSSEEEEEETT---------SCEEEEET
T ss_pred             eEEECCCCEEEEE-eCCEEEEEECCCC--CEEEEEEec-CCCCcEEEEEECCCCCEEEEEECC---------CeEEEEEc
Confidence            4566666454444 4778999999987  444332210 113346788999999988876554         45888899


Q ss_pred             CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       229 ~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      .+++.  ++.+.......  -.+++|++.|+....+        ..+++.+......  ....+.+..    ..+....|
T Consensus       177 ~~~~~--~~~~~~h~~~v--~~~s~~~~~l~sgs~d--------~~i~~~d~~~~~~--~~~~~~~h~----~~~~~~~~  238 (420)
T 4gga_A          177 QQQKR--LRNMTSHSARV--GSLSWNSYILSSGSRS--------GHIHHHDVRVAEH--HVATLSGHS----QEVCGLRW  238 (420)
T ss_dssp             TTTEE--EEEECCCSSCE--EEEEEETTEEEEEETT--------SEEEEEETTSSSC--EEEEEECCS----SCEEEEEE
T ss_pred             CCCcE--EEEEeCCCCce--EEEeeCCCEEEEEeCC--------CceeEeeecccce--eeEEecccc----cceeeeee
Confidence            88762  23333222222  2466788877655422        2477777765532  233344444    45667889


Q ss_pred             CCCCcEEEEEeCCCCeeeEEEEecCCCeE-----EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          309 SSKGELFFVTDRKNGFWNLHKWIESNNEV-----LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~~-----~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      +++|++++.... ++.-.||  +..+++.     .........+....|.+            .+..++.+........|
T Consensus       239 ~~~g~~l~s~~~-D~~v~i~--~~~~~~~~~~~~~~~~~~~~~V~~~~~~p------------~~~~~la~~~gs~D~~I  303 (420)
T 4gga_A          239 APDGRHLASGGN-DNLVNVW--PSAPGEGGWVPLQTFTQHQGAVKAVAWCP------------WQSNVLATGGGTSDRHI  303 (420)
T ss_dssp             CTTSSEEEEEET-TSCEEEE--ESSCCSSCSCCSEEECCCSSCEEEEEECT------------TCTTEEEEEECTTTCEE
T ss_pred             cCCCCeeeeeec-cccceEE--eeccccccceeeeeecccCCceeeeeeCC------------CcccEEEEEeecCCCEE
Confidence            999985544443 4554444  4444321     11112222222223332            55555555432223346


Q ss_pred             EEEeCCCCceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          384 GILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       384 ~~~d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      .++|+.+++..........+..+  .++++.++......  ...|++.++.+++
T Consensus       304 ~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~--d~~I~iwd~~~~~  355 (420)
T 4gga_A          304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA--QNQLVIWKYPTMA  355 (420)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTT--TCCEEEEETTTCC
T ss_pred             EEEeCCccccceeeccccceeeeeecCCCCeEEEEEecC--CCEEEEEECCCCc
Confidence            66688777654332222333333  66777766554322  2467888887765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.34  E-value=0.00011  Score=75.31  Aligned_cols=192  Identities=10%  Similarity=0.027  Sum_probs=109.1

Q ss_pred             ceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCC--CCCEEEEEEeccCCCCCCceeEEE
Q 006979          148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       148 ~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sP--dG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      ....++++ ..+++...++.|.++|+.++ .....+...    ........++|  +|+.++....+         ..+.
T Consensus       158 ~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~~~~~~~~h----~~~v~~~~~~~~~~g~~l~sgs~D---------g~v~  223 (354)
T 2pbi_B          158 SACSFTNSDMQILTASGDGTCALWDVESG-QLLQSFHGH----GADVLCLDLAPSETGNTFVSGGCD---------KKAM  223 (354)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECC----SSCEEEEEECCCSSCCEEEEEETT---------SCEE
T ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCC----CCCeEEEEEEeCCCCCEEEEEeCC---------CeEE
Confidence            34455544 34556667888999999876 223334322    22334455655  67777665544         4588


Q ss_pred             EEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  304 (623)
                      ++|+.+++.  +..+......+...+|+|||+.|+-...|.        .|.++|+..+.   ....+......  ..+.
T Consensus       224 ~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~--------~v~lwd~~~~~---~~~~~~~~~~~--~~~~  288 (354)
T 2pbi_B          224 VWDMRSGQC--VQAFETHESDVNSVRYYPSGDAFASGSDDA--------TCRLYDLRADR---EVAIYSKESII--FGAS  288 (354)
T ss_dssp             EEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTTE---EEEEECCTTCC--SCEE
T ss_pred             EEECCCCcE--EEEecCCCCCeEEEEEeCCCCEEEEEeCCC--------eEEEEECCCCc---EEEEEcCCCcc--ccee
Confidence            889988762  233333344566788999999888666443        27888887652   22233222101  2445


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE-EEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      ...|+|||++++.... ++.  |..+|..+++.. .+......+....|+            |+++.| ++...++.-+|
T Consensus       289 ~~~~s~~g~~l~~g~~-d~~--i~vwd~~~~~~~~~l~~h~~~v~~l~~s------------pdg~~l-~sgs~D~~v~v  352 (354)
T 2pbi_B          289 SVDFSLSGRLLFAGYN-DYT--INVWDVLKGSRVSILFGHENRVSTLRVS------------PDGTAF-CSGSWDHTLRV  352 (354)
T ss_dssp             EEEECTTSSEEEEEET-TSC--EEEEETTTCSEEEEECCCSSCEEEEEEC------------TTSSCE-EEEETTSEEEE
T ss_pred             EEEEeCCCCEEEEEEC-CCc--EEEEECCCCceEEEEECCCCcEEEEEEC------------CCCCEE-EEEcCCCCEEe
Confidence            7889999996665554 344  555676665533 333222233333333            266544 44545666555


Q ss_pred             E
Q 006979          384 G  384 (623)
Q Consensus       384 ~  384 (623)
                      |
T Consensus       353 W  353 (354)
T 2pbi_B          353 W  353 (354)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.34  E-value=0.00022  Score=73.75  Aligned_cols=204  Identities=9%  Similarity=0.038  Sum_probs=108.4

Q ss_pred             eEEEeCC--EEEEEeCC-CCcEEEEeCCCCCCCcee-cCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          149 AFRIFGD--TVIFSNYK-DQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       149 ~~~~s~d--~l~f~~~~-~~~l~~~d~~~g~~~~~~-Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      .+.+++|  .+++.+.. ++.|+++| +++ ..... +...    .+    ..+.|+|++.++.....        +.+.
T Consensus       129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~-~~~~~~i~~~----~~----~~~~~~~~~~~~~~~~d--------g~~~  190 (373)
T 2mad_H          129 MNANTPNNADLLFFQFAAGPAVGLVV-QGG-SSDDQLLSSP----TC----YHIHPGAPSTFYLLCAQ--------GGLA  190 (373)
T ss_pred             ceEECCCCCEEEEEecCCCCeEEEEE-CCC-CEEeEEcCCC----ce----EEEEeCCCceEEEEcCC--------CCEE
Confidence            4555555  67777654 56799999 877 22233 3221    11    34557776654443321        4577


Q ss_pred             EEEcCCCCcccceec------ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-e-eeeEEEcCC-
Q 006979          225 AIALNGQNIQEPKVL------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-V-YKRVCVAGF-  295 (623)
Q Consensus       225 ~idl~~g~~~~~~~l------~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~-~~~~~~~~~-  295 (623)
                      ++|. +++.  ....      .........|.+++|+.+++|+. .       ...++++|+.++.. + ....+.... 
T Consensus       191 ~vd~-~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~-------~~~v~vid~~~~~~~v~~~~~~~~~~~  259 (373)
T 2mad_H          191 KTDH-AGGA--AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-Y-------SGKILQADISAAGATNKAPIDALSGGR  259 (373)
T ss_pred             EEEC-CCcE--EEEEeccccccCCcceeecceeEecCCEEEEEc-C-------CceEEEEeccCCcceEeeeeeecCCcc
Confidence            7888 6552  1111      11112234578899999888886 2       22599999876521 1 111111110 


Q ss_pred             -CCCcc-ccCcCceeCCCCc-EEEEEeCC------CCeeeEEEEecCCCeE-EEEeecccccccccccccCcceeEEeec
Q 006979          296 -DPTIV-ESPTEPKWSSKGE-LFFVTDRK------NGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSH  365 (623)
Q Consensus       296 -~~~~~-~~~~~~~ws~DG~-l~~~~~~~------~g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s  365 (623)
                       ...|. .......+++||+ +|...+..      .+...|+.+|+.+++. +.+..+ ....         .+.+.   
T Consensus       260 ~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~---------~i~~s---  326 (373)
T 2mad_H          260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVD---------AISVA---  326 (373)
T ss_pred             cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcC---------eEEEC---
Confidence             00100 1112256788988 55443321      1234799999988875 444322 1112         22332   


Q ss_pred             CCCCEEEEEEEECCeEEEEEEeCCCCceee
Q 006979          366 GEKNLIACSYRQNGRSYLGILDDFGHSLSL  395 (623)
Q Consensus       366 ~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~  395 (623)
                      +|++.++++.+. +...|.++|.+++++..
T Consensus       327 ~Dg~~~l~v~~~-~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          327 QDGGPDLYALSA-GTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             CCCCeEEEEEcC-CCCeEEEEECCCCCEEe
Confidence            388855555532 34579999998877653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.34  E-value=3.5e-05  Score=78.69  Aligned_cols=221  Identities=10%  Similarity=-0.038  Sum_probs=119.2

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCC-ccceeeeecCCceEEEeCC-EEEEEeCC---
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEY-AVRTTAQEYGGGAFRIFGD-TVIFSNYK---  163 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~-~~r~~~~~~g~~~~~~s~d-~l~f~~~~---  163 (623)
                      ..+.++.++|++++|....+-.+ +...|+..+ .  ++. ..+|... .....  -......+++++ .|++.+..   
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~-~~~~l~~~~-~--g~~-~~~p~~~~~~~~~--~~~p~gv~~d~~g~L~v~D~g~~~   89 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQ-PEMQVAELT-Q--DGL-IPFPPQSGNAIIT--FDTVLGIKSDGNGIVWMLDNGNQS   89 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGC-CSCSEEEEE-T--TEE-EESCCCCSSCCCC--CSCEEEEEECSSSEEEEEECHHHH
T ss_pred             CCcceEEECCCCCEEEEeCCCCC-CceEEEEEC-C--CCe-ecCCCcccCcccc--eeEeeEEEEcCCCcEEEEcCCCCc
Confidence            45678899886678766544322 213466665 2  222 2223210 00000  011223455554 77777644   


Q ss_pred             --CCcEEEEeCCCCCCC-ceecCCC--CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccee
Q 006979          164 --DQRLYKHSIDSKDSS-PLPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV  238 (623)
Q Consensus       164 --~~~l~~~d~~~g~~~-~~~Lt~~--~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~  238 (623)
                        ..+|+++|++++  . .+.+...  ...+..+.++.+++|++.++++......     ....|+++|+++++   ...
T Consensus        90 ~~~~~i~~~d~~tg--~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~-----~~~~i~v~d~~~g~---~~r  159 (343)
T 2qe8_A           90 KSVPKLVAWDTLNN--QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD-----DKAALIRVDLQTGL---AAR  159 (343)
T ss_dssp             TSCCEEEEEETTTT--EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG-----GGCEEEEEETTTCC---EEE
T ss_pred             CCCCeEEEEECCCC--eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC-----CCCeEEEEECCCCC---EEE
Confidence              467999999876  3 3333221  1111234578899998766655432100     12679999998776   333


Q ss_pred             cccC---------------C---------------CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC--CCce
Q 006979          239 LVSG---------------S---------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDV  286 (623)
Q Consensus       239 l~~~---------------~---------------~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~--~~~~  286 (623)
                      +..+               .               ....+.+|||||++|++....       ...||.++.+.  .+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-------~~~l~~~~~~~~~~~~~  232 (343)
T 2qe8_A          160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-------STSMYRIKSADLSNLQL  232 (343)
T ss_dssp             ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-------CSEEEEEEHHHHTCTTC
T ss_pred             EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-------CCeEEEEEHHHhcCCCC
Confidence            2211               0               012456799999999888643       34689988642  1110


Q ss_pred             eee------EEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEe
Q 006979          287 YKR------VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (623)
Q Consensus       287 ~~~------~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~  341 (623)
                      ...      ... +..    ......++++||.+| +++.  +...|.++|+.+++.+.+.
T Consensus       233 ~~~~~~~~~~~~-g~~----g~pdgia~d~~G~l~-va~~--~~~~V~~~d~~~G~~~~~~  285 (343)
T 2qe8_A          233 TDAELGSKIERY-SEK----PICDGISIDKDHNIY-VGDL--AHSAIGVITSADRAYKLLV  285 (343)
T ss_dssp             CHHHHHTTCEEE-EEC----CSCSCEEECTTCCEE-EEEG--GGTEEEEEETTTTEEEEEE
T ss_pred             ChhhhhcceEec-ccC----CCCceEEECCCCCEE-EEcc--CCCeEEEEECCCCCEEEEE
Confidence            110      111 111    234578999999655 4554  3457899998556655554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.33  E-value=5.4e-05  Score=78.27  Aligned_cols=158  Identities=11%  Similarity=0.053  Sum_probs=93.9

Q ss_pred             CceEEEeC-C-EEEEEeCCCCcEEEEeCCCCCCCceecCC--------C-CCCCCeeecceeeCC-CCCEEEEEEeccCC
Q 006979          147 GGAFRIFG-D-TVIFSNYKDQRLYKHSIDSKDSSPLPITP--------D-YGEPLVSYADGIFDP-RFNRYVTVREDRRQ  214 (623)
Q Consensus       147 ~~~~~~s~-d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~--------~-~~~~~~~~~d~~~sP-dG~~l~~v~~~~~~  214 (623)
                      +.+..+++ + ..+++...++.|.++++.++ .....+..        . ............|+| +++.++....+   
T Consensus        46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---  121 (408)
T 4a11_B           46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD---  121 (408)
T ss_dssp             EEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT---
T ss_pred             EEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC---
Confidence            45566665 4 56666667888999999875 12222210        0 000133466788999 66666554433   


Q ss_pred             CCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCC---CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE
Q 006979          215 DALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP---RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC  291 (623)
Q Consensus       215 ~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSP---DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~  291 (623)
                            ..|.++|+.+++   ...............|+|   +++.|+....+        ..|.++|+..+.   ....
T Consensus       122 ------~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~d~~~~~---~~~~  181 (408)
T 4a11_B          122 ------KTLKVWDTNTLQ---TADVFNFEETVYSHHMSPVSTKHCLVAVGTRG--------PKVQLCDLKSGS---CSHI  181 (408)
T ss_dssp             ------SEEEEEETTTTE---EEEEEECSSCEEEEEECSSCSSCCEEEEEESS--------SSEEEEESSSSC---CCEE
T ss_pred             ------CeEEEeeCCCCc---cceeccCCCceeeeEeecCCCCCcEEEEEcCC--------CeEEEEeCCCcc---eeee
Confidence                  568899998876   333333333344456777   45567665533        238888988763   3334


Q ss_pred             EcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC
Q 006979          292 VAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       292 ~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~  335 (623)
                      +.+..    ..+..+.|+|+++ +++.... +|.  |..+|..++
T Consensus       182 ~~~~~----~~v~~~~~~~~~~~ll~~~~~-dg~--i~i~d~~~~  219 (408)
T 4a11_B          182 LQGHR----QEILAVSWSPRYDYILATASA-DSR--VKLWDVRRA  219 (408)
T ss_dssp             ECCCC----SCEEEEEECSSCTTEEEEEET-TSC--EEEEETTCS
T ss_pred             ecCCC----CcEEEEEECCCCCcEEEEEcC-CCc--EEEEECCCC
Confidence            44444    4667889999998 6766665 454  444555443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.33  E-value=7.7e-06  Score=82.72  Aligned_cols=233  Identities=11%  Similarity=0.022  Sum_probs=131.9

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCC----ceecCCCCCCCCeeecceeeCCCCC-EEEEEEeccCCCCCCce
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFN-RYVTVREDRRQDALNST  220 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~----~~~Lt~~~~~~~~~~~d~~~sPdG~-~l~~v~~~~~~~~~~~~  220 (623)
                      +.+..++++ ..+++...++.|.++++.++  .    ...+...    ........|+|+|+ .|+....+         
T Consensus        14 v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~--~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d---------   78 (342)
T 1yfq_A           14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQ--AKNVDLLQSLRY----KHPLLCCNFIDNTDLQIYVGTVQ---------   78 (342)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEEEETT--TTEEEEEEEEEC----SSCEEEEEEEESSSEEEEEEETT---------
T ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEeCCC--Cccccceeeeec----CCceEEEEECCCCCcEEEEEcCC---------
Confidence            345555544 44555557788999998766  3    2333221    23466788999999 77776543         


Q ss_pred             eEEEEEEc-CCCCcccceeccc--CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecC---------CCceee
Q 006979          221 TEIVAIAL-NGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE---------NGDVYK  288 (623)
Q Consensus       221 ~~L~~idl-~~g~~~~~~~l~~--~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~---------~~~~~~  288 (623)
                      ..|+++|+ .++.   ...+..  ....+....|+| ++.|+....+        ..|.++|+..         +..   
T Consensus        79 g~i~~wd~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~---  143 (342)
T 1yfq_A           79 GEILKVDLIGSPS---FQALTNNEANLGICRICKYG-DDKLIAASWD--------GLIEVIDPRNYGDGVIAVKNLN---  143 (342)
T ss_dssp             SCEEEECSSSSSS---EEECBSCCCCSCEEEEEEET-TTEEEEEETT--------SEEEEECHHHHTTBCEEEEESC---
T ss_pred             CeEEEEEeccCCc---eEeccccCCCCceEEEEeCC-CCEEEEEcCC--------CeEEEEcccccccccccccCCe---
Confidence            45889999 8887   566655  445566788999 8888766533        3488888765         211   


Q ss_pred             eEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCC-Ce--EEEEe-ecccccccccccccCcceeEEee
Q 006979          289 RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN-NE--VLAIY-SLDAEFSRPLWVFGINSYEIIQS  364 (623)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~-~~--~~~l~-~~~~~~~~~~w~~~~~~~~~l~~  364 (623)
                      ...+. ..    ..+..+.|++++ ++... . ++  .|..+|..+ +.  ..... .....+..         +.+   
T Consensus       144 ~~~~~-~~----~~v~~~~~~~~~-l~~~~-~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~i~~---------i~~---  201 (342)
T 1yfq_A          144 SNNTK-VK----NKIFTMDTNSSR-LIVGM-N-NS--QVQWFRLPLCEDDNGTIEESGLKYQIRD---------VAL---  201 (342)
T ss_dssp             SSSSS-SC----CCEEEEEECSSE-EEEEE-S-TT--EEEEEESSCCTTCCCEEEECSCSSCEEE---------EEE---
T ss_pred             eeEEe-eC----CceEEEEecCCc-EEEEe-C-CC--eEEEEECCccccccceeeecCCCCceeE---------EEE---
Confidence            11111 22    456678899887 44433 3 34  456667665 33  22221 11112222         222   


Q ss_pred             cCCCCEEEEEEEECCeEEEEEEeCC-----CCceeecccCCc---------ceEee--eecCCEEEEEEecCCCCCeEEE
Q 006979          365 HGEKNLIACSYRQNGRSYLGILDDF-----GHSLSLLDIPFT---------DIDNI--TLGNDCLFVEGASGVEPSSVAK  428 (623)
Q Consensus       365 s~~~~~l~~~~~~~g~~~L~~~d~~-----~~~~~~lt~~~~---------~v~~~--~~~~~~~~~~~~s~~~~~~ly~  428 (623)
                      +|.++.++++...+|.-+||.++..     ......+.....         .+..+  +++++.++ ++..   ...|+.
T Consensus       202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~---dg~i~v  277 (342)
T 1yfq_A          202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY-TAGS---DGIISC  277 (342)
T ss_dssp             CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE-EEET---TSCEEE
T ss_pred             CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE-EecC---CceEEE
Confidence            2303345555556787777777655     133333433221         45444  55555544 4432   246888


Q ss_pred             EEcCCCc
Q 006979          429 VTLDDHK  435 (623)
Q Consensus       429 ~~l~~~~  435 (623)
                      +++.+++
T Consensus       278 wd~~~~~  284 (342)
T 1yfq_A          278 WNLQTRK  284 (342)
T ss_dssp             EETTTTE
T ss_pred             EcCccHh
Confidence            8888775

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.33  E-value=0.00024  Score=71.31  Aligned_cols=286  Identities=13%  Similarity=0.059  Sum_probs=149.2

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ...+..+.|+| ++.+...-..   ++...||.....   +.....+..   .-.-|...+.+..++++ ..+++...++
T Consensus        38 ~~~V~~v~~sp~~~~~l~S~s~---D~~i~vWd~~~~---~~~~~~~~~---~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           38 NGWVTQIATTPQFPDMILSASR---DKTIIMWKLTRD---ETNYGIPQR---ALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             SSCEEEEEECTTCTTEEEEEET---TSCEEEEEECCS---SSCSEEEEE---EECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cCCEEEEEEeCCCCCEEEEEcC---CCeEEEEECCCC---CcccceeeE---EEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            44567889998 5666555443   578888876543   111000000   00012233456666666 5666666788


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec--ccCC
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL--VSGS  243 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l--~~~~  243 (623)
                      .|..++...+ .........    ........++|+++.++....+         ..+.+.|+.+..   ....  ....
T Consensus       109 ~i~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~l~s~s~d---------~~~~~~d~~~~~---~~~~~~~~~~  171 (340)
T 4aow_A          109 TLRLWDLTTG-TTTRRFVGH----TKDVLSVAFSSDNRQIVSGSRD---------KTIKLWNTLGVC---KYTVQDESHS  171 (340)
T ss_dssp             EEEEEETTTT-EEEEEEECC----SSCEEEEEECTTSSCEEEEETT---------SCEEEECTTSCE---EEEECSSSCS
T ss_pred             cceEEeeccc-ceeeeecCC----CCceeEEEEeecCccceeecCC---------CeEEEEEeCCCc---eEEEEecccc
Confidence            8999988754 111222211    2233445689999988766544         346677776553   2222  2223


Q ss_pred             CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCC
Q 006979          244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG  323 (623)
Q Consensus       244 ~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g  323 (623)
                      +......|++++...+++....      ...|.+.|+..+.   ....+.+..    ..+....|+|||++++.... ++
T Consensus       172 ~~v~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~~~~---~~~~~~~h~----~~v~~~~~s~~~~~l~s~s~-Dg  237 (340)
T 4aow_A          172 EWVSCVRFSPNSSNPIIVSCGW------DKLVKVWNLANCK---LKTNHIGHT----GYLNTVTVSPDGSLCASGGK-DG  237 (340)
T ss_dssp             SCEEEEEECSCSSSCEEEEEET------TSCEEEEETTTTE---EEEEECCCS----SCEEEEEECTTSSEEEEEET-TC
T ss_pred             CcccceEEccCCCCcEEEEEcC------CCEEEEEECCCCc---eeeEecCCC----CcEEEEEECCCCCEEEEEeC-CC
Confidence            3455567999876544443222      1237888887762   334444444    45677899999996655554 45


Q ss_pred             eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-eccc----
Q 006979          324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDI----  398 (623)
Q Consensus       324 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~----  398 (623)
                      .  |..+|..+.+..........+..         ..+.    .++.++... .++.  |.++|+.++... .+..    
T Consensus       238 ~--i~iwd~~~~~~~~~~~~~~~v~~---------~~~~----~~~~~~~~~-~d~~--i~iwd~~~~~~~~~~~~~~~~  299 (340)
T 4aow_A          238 Q--AMLWDLNEGKHLYTLDGGDIINA---------LCFS----PNRYWLCAA-TGPS--IKIWDLEGKIIVDELKQEVIS  299 (340)
T ss_dssp             E--EEEEETTTTEEEEEEECSSCEEE---------EEEC----SSSSEEEEE-ETTE--EEEEETTTTEEEEEECCC---
T ss_pred             e--EEEEEeccCceeeeecCCceEEe---------eecC----CCCceeecc-CCCE--EEEEECCCCeEEEecccccee
Confidence            4  55567777654433332222222         2222    334444433 4554  455577665432 2221    


Q ss_pred             -----CCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          399 -----PFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       399 -----~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                           ....+..+  ++++..+ ++++..   ..|++.++++|+
T Consensus       300 ~~~~~h~~~v~~l~~s~dg~~l-~sgs~D---g~v~iW~~~tGt  339 (340)
T 4aow_A          300 TSSKAEPPQCTSLAWSADGQTL-FAGYTD---NLVRVWQVTIGT  339 (340)
T ss_dssp             ----CCCCCEEEEEECTTSSEE-EEEETT---SCEEEEEEEC--
T ss_pred             eeccCCCCCEEEEEECCCCCEE-EEEeCC---CEEEEEeCCCcC
Confidence                 11234444  5555544 444432   346666766664

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.33  E-value=5e-05  Score=85.41  Aligned_cols=240  Identities=11%  Similarity=0.009  Sum_probs=134.1

Q ss_pred             CceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCC----ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCce
Q 006979          147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST  220 (623)
Q Consensus       147 ~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~----~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~  220 (623)
                      +.+.+++++  .++++...|+.|.++++..+...    .+.+...    .....+..|+|+|++|+....+         
T Consensus       385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h----~~~v~~v~~s~~g~~l~sgs~D---------  451 (694)
T 3dm0_A          385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH----SHFVEDVVLSSDGQFALSGSWD---------  451 (694)
T ss_dssp             EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC----SSCEEEEEECTTSSEEEEEETT---------
T ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCC----CCcEEEEEECCCCCEEEEEeCC---------
Confidence            344455433  57777778888999998753111    1233322    3346678899999988776554         


Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      ..|.+.|+.++..  .+.+......+...+|||||++|+-.+.|.        .|.+.|..+..   ...+..... ...
T Consensus       452 g~v~vwd~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~--------~i~iwd~~~~~---~~~~~~~~~-~h~  517 (694)
T 3dm0_A          452 GELRLWDLAAGVS--TRRFVGHTKDVLSVAFSLDNRQIVSASRDR--------TIKLWNTLGEC---KYTISEGGE-GHR  517 (694)
T ss_dssp             SEEEEEETTTTEE--EEEEECCSSCEEEEEECTTSSCEEEEETTS--------CEEEECTTSCE---EEEECSSTT-SCS
T ss_pred             CcEEEEECCCCcc--eeEEeCCCCCEEEEEEeCCCCEEEEEeCCC--------EEEEEECCCCc---ceeeccCCC-CCC
Confidence            5688999988752  334444444566688999999988666443        26666765441   222222111 101


Q ss_pred             ccCcCceeCCCCc--EEEEEeCCCCeeeEEEEecCCCeEEEEe-ecccccccccccccCcceeEEeecCCCCEEEEEEEE
Q 006979          301 ESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ  377 (623)
Q Consensus       301 ~~~~~~~ws~DG~--l~~~~~~~~g~~~L~~~d~~~~~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~  377 (623)
                      ..+....|+|++.  +++.... ++.  |..+|+.+++..... .....+....|+            |+++. +++...
T Consensus       518 ~~v~~~~~~~~~~~~~l~s~s~-d~~--v~vwd~~~~~~~~~~~~h~~~v~~v~~s------------pdg~~-l~sg~~  581 (694)
T 3dm0_A          518 DWVSCVRFSPNTLQPTIVSASW-DKT--VKVWNLSNCKLRSTLAGHTGYVSTVAVS------------PDGSL-CASGGK  581 (694)
T ss_dssp             SCEEEEEECSCSSSCEEEEEET-TSC--EEEEETTTCCEEEEECCCSSCEEEEEEC------------TTSSE-EEEEET
T ss_pred             CcEEEEEEeCCCCcceEEEEeC-CCe--EEEEECCCCcEEEEEcCCCCCEEEEEEe------------CCCCE-EEEEeC
Confidence            3456788999974  4444443 454  555677666544333 222222222332            26554 445556


Q ss_pred             CCeEEEEEEeCCCCceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          378 NGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       378 ~g~~~L~~~d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      +|.-+|  +|+.+++..........+..+  ++++. +++.+.+    ..|...++.+++.
T Consensus       582 Dg~i~i--wd~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~----~~i~iwd~~~~~~  635 (694)
T 3dm0_A          582 DGVVLL--WDLAEGKKLYSLEANSVIHALCFSPNRY-WLCAATE----HGIKIWDLESKSI  635 (694)
T ss_dssp             TSBCEE--EETTTTEEEECCBCSSCEEEEEECSSSS-EEEEEET----TEEEEEETTTTEE
T ss_pred             CCeEEE--EECCCCceEEEecCCCcEEEEEEcCCCc-EEEEEcC----CCEEEEECCCCCC
Confidence            666555  466665543221222335444  44443 4444432    3488888887753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.32  E-value=3.2e-06  Score=94.99  Aligned_cols=196  Identities=12%  Similarity=0.068  Sum_probs=116.5

Q ss_pred             CCEEEEEeCCCCcEEEEeCCC----CCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          154 GDTVIFSNYKDQRLYKHSIDS----KDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~----g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      .+.|||++...++|+++++++    . .....+...    ......+++++.++.|+++...        ...|++++++
T Consensus       417 ~~~Ly~sD~~~~~I~~~~~~g~~~~~-~~~~~i~~~----~~~P~glavD~~~g~LY~tD~~--------~~~I~v~d~d  483 (699)
T 1n7d_A          417 SNRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRD----IQAPDGLAVDWIHSNIYWTDSV--------LGTVSVADTK  483 (699)
T ss_dssp             TTEEEECCTTTTSBEEEESCCCCC-C-CCCCBCCSC----C--CCCEECCCSSSBCEECCTT--------TSCEEEEBSS
T ss_pred             cCeEEEEecCCCeEEEEecCCCCCCc-ceEEEEeCC----CCCcceEEEEeeCCcEEEEecc--------CCeEEEEecC
Confidence            458888887778899999975    2 112222211    1223456778777777664321        1569999998


Q ss_pred             CCCcccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979          230 GQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       230 ~g~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      +..   .+.+.. +.......+++|++.+|+|..+..      ...|+++++++..   ...++...-    ..+..++|
T Consensus       484 g~~---~~~l~~~~~~~P~giavDp~~g~ly~td~~~------~~~I~~~~~dG~~---~~~l~~~~l----~~PnGlav  547 (699)
T 1n7d_A          484 GVK---RKTLFREQGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNGVD---IYSLVTENI----QWPNGITL  547 (699)
T ss_dssp             SCC---EEEECCCSSCCCCCEECCSSSSCCEECCCSS------SCCEEBCCSSSCC---CCEESCSSC----SSCCCEEE
T ss_pred             CCc---eEEEEeCCCCCcceEEEccCCCcEEEcccCC------CCeEEEEeCCCCC---eeEEEeCCC----CCccEEEE
Confidence            775   444433 233345567999988898876432      2458988887652   222222221    34668999


Q ss_pred             CCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      +++++.+|+++.  +...|+++++++...+.+......+..|      ..+.+     +++.|||+.  .+..+|++++.
T Consensus       548 d~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P------~glav-----d~~~lywtd--~~~~~V~~~d~  612 (699)
T 1n7d_A          548 DLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHP------FSLAV-----FEDKVFWTD--IINEAIFSANR  612 (699)
T ss_dssp             CTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSC------CCCEE-----ETTEEEEEC--STTTCEEEEET
T ss_pred             eccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCc------eEeEE-----ECCEEEEEe--CCCCeEEEEEc
Confidence            998774444554  4567999998876655554321111111      23333     456788776  33456788887


Q ss_pred             CCCce
Q 006979          389 FGHSL  393 (623)
Q Consensus       389 ~~~~~  393 (623)
                      .+++.
T Consensus       613 ~~G~~  617 (699)
T 1n7d_A          613 LTGSD  617 (699)
T ss_dssp             TTEEE
T ss_pred             cCCCc
Confidence            65543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.32  E-value=0.00051  Score=68.17  Aligned_cols=256  Identities=9%  Similarity=-0.019  Sum_probs=133.0

Q ss_pred             ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC---CEEEEEeCCCC
Q 006979           90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYKDQ  165 (623)
Q Consensus        90 ~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~---d~l~f~~~~~~  165 (623)
                      .+..+.++| +..+. .-.   .++...||.....++ +....+..        |...+.+..+++   +.++++...|+
T Consensus        11 ~V~~~~~s~~g~~la-s~s---~D~~v~iw~~~~~~~-~~~~~l~g--------H~~~V~~v~~s~~~~g~~l~s~s~D~   77 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMA-TCS---SDKTIKIFEVEGETH-KLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG   77 (297)
T ss_dssp             CEEEEEECTTSSEEE-EEE---TTSCEEEEEBCSSCB-CCCEEECC--------CSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred             ceEEEEECCCCCEEE-EEe---CCCEEEEEecCCCCc-EEEEEEcc--------ccCCeEEEEecCCCcCCEEEEEcCCC
Confidence            456778888 55443 332   247777776643211 11111111        111233444442   35667777888


Q ss_pred             cEEEEeCCCCC-CCceecCCCCCCCCeeecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccC
Q 006979          166 RLYKHSIDSKD-SSPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG  242 (623)
Q Consensus       166 ~l~~~d~~~g~-~~~~~Lt~~~~~~~~~~~d~~~sPd--G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~  242 (623)
                      .|.++|+.++. .....+...    ........|+|+  |+.|+....+         ..+.++|+.++.......+...
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h----~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~~~~~~~~~~~~h  144 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVH----SASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKENGTTSPIIIDAH  144 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCSSSCBCCEEEECC
T ss_pred             EEEEEEcCCCceEEEEEeecC----CCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecCCCceeeeeeecc
Confidence            89999997651 011222211    234667889998  7877765554         5678888876531112223333


Q ss_pred             CCcccceeeCCC-------------CCEEEEEEecCCCCCCCceEEEEEEecCCCc-eeeeEEEcCCCCCccccCcCcee
Q 006979          243 SDFYAFPRMDPR-------------GERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       243 ~~~~~~p~wSPD-------------G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      ...+....|+|+             +++|+-...|.        .|.+.|+..+.. ......+.+..    ..+....|
T Consensus       145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~--------~v~lwd~~~~~~~~~~~~~l~~H~----~~V~~v~~  212 (297)
T 2pm7_B          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN--------LVKIWKYNSDAQTYVLESTLEGHS----DWVRDVAW  212 (297)
T ss_dssp             SSCEEEEEECCCC------------CCEEEEEETTS--------CEEEEEEETTTTEEEEEEEECCCS----SCEEEEEE
T ss_pred             cCccceEeecCCcccccccCCCCCCcceEEEEcCCC--------cEEEEEEcCCCceEEEEEEecCCC----CceEEEEE
Confidence            334556789997             46676554332        277778776532 11223344444    46778999


Q ss_pred             CCCC---cEEEEEeCCCCeeeEEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          309 SSKG---ELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       309 s~DG---~l~~~~~~~~g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      +|++   +++..... ++.-+||.++...+.. ..+... .......     ....|.   |+++.|+ +...++.-+||
T Consensus       213 sp~~~~~~~las~s~-D~~v~iWd~~~~~~~~~~~~~~~-~~~~~~v-----~~~~~s---~~g~~la-s~~~D~~v~lw  281 (297)
T 2pm7_B          213 SPTVLLRSYMASVSQ-DRTCIIWTQDNEQGPWKKTLLKE-EKFPDVL-----WRASWS---LSGNVLA-LSGGDNKVTLW  281 (297)
T ss_dssp             CCCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSS-SCCSSCE-----EEEEEC---SSSCCEE-EEETTSCEEEE
T ss_pred             CCCCCCceEEEEEEC-CCcEEEEEeCCCCCccceeeeec-ccCCCcE-----EEEEEC---CCCCEEE-EEcCCCcEEEE
Confidence            9996   44444443 5666666554322221 222211 0111111     112222   3666554 45567888888


Q ss_pred             EEeCCCCceee
Q 006979          385 ILDDFGHSLSL  395 (623)
Q Consensus       385 ~~d~~~~~~~~  395 (623)
                      ..+.. +.++.
T Consensus       282 ~~~~~-g~w~~  291 (297)
T 2pm7_B          282 KENLE-GKWEP  291 (297)
T ss_dssp             EECTT-SCEEE
T ss_pred             EECCC-CcEEe
Confidence            77654 44443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.32  E-value=0.00022  Score=70.81  Aligned_cols=202  Identities=9%  Similarity=0.027  Sum_probs=113.7

Q ss_pred             ceEEEeCC-EEEEEeCCCCcEEEEeCCCCC-CCceecCCCCCCCCeeecceeeCCC--CCEEEEEEeccCCCCCCceeEE
Q 006979          148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKD-SSPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       148 ~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~-~~~~~Lt~~~~~~~~~~~d~~~sPd--G~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      .+.+++++ ..+++...++.|.++++.++. .....+...    ........|+|+  |+.|+....|         ..+
T Consensus        13 ~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH----~~~V~~v~~s~~~~g~~l~s~s~D---------~~v   79 (297)
T 2pm7_B           13 HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GKV   79 (297)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------TEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc----cCCeEEEEecCCCcCCEEEEEcCC---------CEE
Confidence            34555554 456666678889999986430 122344432    234567788864  7777665544         467


Q ss_pred             EEEEcCCCCcccceecccCCCcccceeeCCC--CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc
Q 006979          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPD--G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~  301 (623)
                      .+.|+.++.......+......+....|+||  |+.|+-...|        ..|.++|+..+... ....+.+..    .
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d--------~~v~~wd~~~~~~~-~~~~~~~h~----~  146 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD--------GKVSVVEFKENGTT-SPIIIDAHA----I  146 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT--------SEEEEEEBCSSSCB-CCEEEECCS----S
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC--------CcEEEEEecCCCce-eeeeeeccc----C
Confidence            8888887642223333333345666889998  8888766533        24788888765321 123344444    4


Q ss_pred             cCcCceeCCC-------------CcEEEEEeCCCCeeeEEEEecCCCeEE---EEeecccccccccccccCcceeEEeec
Q 006979          302 SPTEPKWSSK-------------GELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLDAEFSRPLWVFGINSYEIIQSH  365 (623)
Q Consensus       302 ~~~~~~ws~D-------------G~l~~~~~~~~g~~~L~~~d~~~~~~~---~l~~~~~~~~~~~w~~~~~~~~~l~~s  365 (623)
                      .+....|+|+             +++++.... ++.-+||.++.......   .+......+....|++           
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~-D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp-----------  214 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-----------  214 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEET-TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-----------
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEcC-CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC-----------
Confidence            5667889987             345555544 56666665543222121   2221222223333332           


Q ss_pred             CCC--CEEEEEEEECCeEEEEEEeC
Q 006979          366 GEK--NLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       366 ~~~--~~l~~~~~~~g~~~L~~~d~  388 (623)
                       ++  +.++++...++.-+||-++.
T Consensus       215 -~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          215 -TVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             -CCSSSEEEEEEETTSCEEEEEESS
T ss_pred             -CCCCceEEEEEECCCcEEEEEeCC
Confidence             54  46667777788888886654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.32  E-value=0.00024  Score=72.15  Aligned_cols=228  Identities=11%  Similarity=0.035  Sum_probs=121.2

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCC------CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDS------SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~------~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      .++++...|+.|.++|+..+..      ....+...    ........|+|++++++....|         ..+.+.|+.
T Consensus        40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h----~~~V~~~~~~~~~~~l~s~s~D---------~~v~lwd~~  106 (343)
T 2xzm_R           40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH----NHFVSDLALSQENCFAISSSWD---------KTLRLWDLR  106 (343)
T ss_dssp             CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC----SSCEEEEEECSSTTEEEEEETT---------SEEEEEETT
T ss_pred             CEEEEEcCCCEEEEEECCcCCcccccccccchhccC----CCceEEEEECCCCCEEEEEcCC---------CcEEEEECC
Confidence            5667777788888888864310      01123321    2346678899999988765544         568888998


Q ss_pred             CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws  309 (623)
                      +++.  ...+......+...+|||||++|+-...|.        .|.+.|+.+.    ......... .....+....|+
T Consensus       107 ~~~~--~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~--------~i~~wd~~~~----~~~~~~~~~-~~~~~v~~~~~~  171 (343)
T 2xzm_R          107 TGTT--YKRFVGHQSEVYSVAFSPDNRQILSAGAER--------EIKLWNILGE----CKFSSAEKE-NHSDWVSCVRYS  171 (343)
T ss_dssp             SSCE--EEEEECCCSCEEEEEECSSTTEEEEEETTS--------CEEEEESSSC----EEEECCTTT-SCSSCEEEEEEC
T ss_pred             CCcE--EEEEcCCCCcEEEEEECCCCCEEEEEcCCC--------EEEEEeccCC----ceeeeeccc-CCCceeeeeeec
Confidence            8762  334444444566688999999988665332        3777787643    122222111 000345567788


Q ss_pred             CCC----------cEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          310 SKG----------ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       310 ~DG----------~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                      |++          .+++.... ++.-+  .+|........+......+....|+            |+++.| ++...+|
T Consensus       172 ~~~~~~~~~~~~~~~l~s~~~-d~~i~--iwd~~~~~~~~~~~h~~~v~~~~~s------------~~g~~l-~sgs~dg  235 (343)
T 2xzm_R          172 PIMKSANKVQPFAPYFASVGW-DGRLK--VWNTNFQIRYTFKAHESNVNHLSIS------------PNGKYI-ATGGKDK  235 (343)
T ss_dssp             CCCCSCSCCCSSCCEEEEEET-TSEEE--EEETTTEEEEEEECCSSCEEEEEEC------------TTSSEE-EEEETTC
T ss_pred             cccccccccCCCCCEEEEEcC-CCEEE--EEcCCCceeEEEcCccccceEEEEC------------CCCCEE-EEEcCCC
Confidence            876          44444443 45444  4554332222332222223323333            266654 4455566


Q ss_pred             eEEEEEEeCC-CCc-eeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          380 RSYLGILDDF-GHS-LSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       380 ~~~L~~~d~~-~~~-~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      .-+||  |+. .+. ...+.. ...+..+  ++++. ++..+.+    ..+..+++.+++
T Consensus       236 ~v~iw--d~~~~~~~~~~~~~-~~~v~~v~~sp~~~-~la~~~d----~~v~iw~~~~~~  287 (343)
T 2xzm_R          236 KLLIW--DILNLTYPQREFDA-GSTINQIAFNPKLQ-WVAVGTD----QGVKIFNLMTQS  287 (343)
T ss_dssp             EEEEE--ESSCCSSCSEEEEC-SSCEEEEEECSSSC-EEEEEES----SCEEEEESSSCC
T ss_pred             eEEEE--ECCCCcccceeecC-CCcEEEEEECCCCC-EEEEECC----CCEEEEEeCCCC
Confidence            65555  552 222 222222 2234444  55554 3333332    246777776654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.32  E-value=0.00011  Score=88.38  Aligned_cols=246  Identities=12%  Similarity=0.019  Sum_probs=138.4

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.+++++ ..+++...++.|.++|+.++ .....+...    ........|+|||++|+....+         +.|.+
T Consensus       618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~-~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~d---------~~v~v  683 (1249)
T 3sfz_A          618 VYHACFSQDGQRIASCGADKTLQVFKAETG-EKLLDIKAH----EDEVLCCAFSSDDSYIATCSAD---------KKVKI  683 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCC-CEEEEeccC----CCCEEEEEEecCCCEEEEEeCC---------CeEEE
Confidence            445666666 45566667888999999876 233444432    3456678899999988876543         56899


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      +|+.+++.  +..+......+....|+|+++..+++....      ...|.++|+.++.   ....+.+..    ..+..
T Consensus       684 wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~------d~~v~vwd~~~~~---~~~~~~~h~----~~v~~  748 (1249)
T 3sfz_A          684 WDSATGKL--VHTYDEHSEQVNCCHFTNKSNHLLLATGSN------DFFLKLWDLNQKE---CRNTMFGHT----NSVNH  748 (1249)
T ss_dssp             EETTTCCE--EEEEECCSSCEEEEEECSSSSCCEEEEEET------TSCEEEEETTSSS---EEEEECCCS----SCEEE
T ss_pred             EECCCCce--EEEEcCCCCcEEEEEEecCCCceEEEEEeC------CCeEEEEECCCcc---hhheecCCC----CCEEE
Confidence            99988862  334444444566678999755433333222      2238888988763   333444444    46678


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEee-ccccccc--c--cccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSR--P--LWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~--~--~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~  380 (623)
                      ..|+|||++++.... +|.  |..+|..+++...... .......  +  ..........+   +++++.++...  ++ 
T Consensus       749 ~~~sp~~~~l~s~s~-dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~dg~~l~~~~--~~-  819 (1249)
T 3sfz_A          749 CRFSPDDELLASCSA-DGT--LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW---SADGDKIIVAA--KN-  819 (1249)
T ss_dssp             EEECSSTTEEEEEES-SSE--EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB---CTTSSEEEEEE--TT-
T ss_pred             EEEecCCCEEEEEEC-CCe--EEEEeCCCCcccceecccccccccCCccccccceEEEEEE---CCCCCEEEEEc--CC-
Confidence            899999995554444 354  5555666665332221 1000000  0  00000111222   23777777655  33 


Q ss_pred             EEEEEEeCCCCcee-ecc-cCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          381 SYLGILDDFGHSLS-LLD-IPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       381 ~~L~~~d~~~~~~~-~lt-~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                       .+.++|..++... .+. .....+..+  ++++..++....    ...+..+++.+++
T Consensus       820 -~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----dg~v~vwd~~~~~  873 (1249)
T 3sfz_A          820 -KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----QYCVELWNIDSRL  873 (1249)
T ss_dssp             -EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS----SSCEEEEETTTTE
T ss_pred             -cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCc
Confidence             5666787766543 232 222334333  666665544332    2356777777654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.31  E-value=7.9e-05  Score=77.53  Aligned_cols=226  Identities=11%  Similarity=-0.012  Sum_probs=115.5

Q ss_pred             eCCEEEEEeCCC------CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEe-c------cCCCCC--
Q 006979          153 FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE-D------RRQDAL--  217 (623)
Q Consensus       153 s~d~l~f~~~~~------~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~-~------~~~~~~--  217 (623)
                      .++.++++...+      +.|.++|.++. .....+..+. .+...-.++.|+|+++.+ ++++ -      .+-.+.  
T Consensus       146 ~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~-~v~~~~~~~~-~~~~~~Yd~~~~p~~~~m-vsS~wg~p~~~~~g~~~~~~  222 (462)
T 2ece_A          146 GPDAIYISALGNEEGEGPGGILMLDHYSF-EPLGKWEIDR-GDQYLAYDFWWNLPNEVL-VSSEWAVPNTIEDGLKLEHL  222 (462)
T ss_dssp             CSSCEEEEEEEETTSCSCCEEEEECTTTC-CEEEECCSBC-TTCCCCCCEEEETTTTEE-EECBCCCHHHHTTCCCTTTH
T ss_pred             CCCeEEEEcCCCcCCCCCCeEEEEECCCC-eEEEEEccCC-CCccccceEEECCCCCEE-EEccCcCccccccccchhhh
Confidence            455555554333      57999999876 2234444321 122333478899999954 4443 1      000000  


Q ss_pred             --CceeEEEEEEcCCCCcccceecccCCCcccce-----eeCCCCCEEEEEEe-cCCCCCCCceEEEEEEecCCCceeee
Q 006979          218 --NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFP-----RMDPRGERMAWIEW-HHPNMPWDKAELWVGYISENGDVYKR  289 (623)
Q Consensus       218 --~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p-----~wSPDG~~la~~~~-~~~~~p~~~~~L~v~d~~~~~~~~~~  289 (623)
                        ....+|.++|+++++.  ...+.-+.. -..|     .++|||++++.+.. +..+   ..++|+++..++ +.....
T Consensus       223 ~~~~~d~V~v~D~~~~k~--~~tI~vg~~-g~~P~~i~f~~~Pdg~~aYV~~e~~~~~---Lss~V~v~~~d~-g~~~~~  295 (462)
T 2ece_A          223 KDRYGNRIHFWDLRKRKR--IHSLTLGEE-NRMALELRPLHDPTKLMGFINMVVSLKD---LSSSIWLWFYED-GKWNAE  295 (462)
T ss_dssp             HHHSCCEEEEEETTTTEE--EEEEESCTT-EEEEEEEEECSSTTCCEEEEEEEEETTT---CCEEEEEEEEET-TEEEEE
T ss_pred             hhccCCEEEEEECCCCcE--eeEEecCCC-CCccceeEeeECCCCCEEEEEEeeeccC---CCceEEEEEecC-CceeEE
Confidence              1247899999998752  233433211 1223     36999998766543 1111   135677777665 332222


Q ss_pred             EEE--cCCCCCc------------cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecC-CCeEEEEe--ecccccccccc
Q 006979          290 VCV--AGFDPTI------------VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEVLAIY--SLDAEFSRPLW  352 (623)
Q Consensus       290 ~~~--~~~~~~~------------~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~-~~~~~~l~--~~~~~~~~~~w  352 (623)
                      .++  ....-.+            ......+..|+||+.+|++++..  ..|..+|.. .++.+.+.  +....+..+.+
T Consensus       296 ~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~--d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~  373 (462)
T 2ece_A          296 KVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI--GEVRQYDISNPFKPVLTGKVKLGGIFHRADH  373 (462)
T ss_dssp             EEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT--TEEEEEECSSTTSCEEEEEEECBTTTTCBCC
T ss_pred             EEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC--CEEEEEEecCCCCcEEEEEEEeCCeeccccc
Confidence            221  1100000            02456788999999888898844  456666653 33333222  21111111111


Q ss_pred             ------cccCcceeEEeecCCCCEEEEEEE-----------ECCeEEEEEE--eCCCCcee
Q 006979          353 ------VFGINSYEIIQSHGEKNLIACSYR-----------QNGRSYLGIL--DDFGHSLS  394 (623)
Q Consensus       353 ------~~~~~~~~~l~~s~~~~~l~~~~~-----------~~g~~~L~~~--d~~~~~~~  394 (623)
                            ..+.+.+.+.   +||++||++..           +.....++++  |.++| ++
T Consensus       374 ~~G~~~~ggPr~~~lS---pDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~  430 (462)
T 2ece_A          374 PAGHKLTGAPQMLEIS---RDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LE  430 (462)
T ss_dssp             TTSCCCCSCCCCEEEC---TTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EE
T ss_pred             cccccCCCCCCEEEEc---CCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ce
Confidence                  0122445554   48998888872           2233456644  66666 54

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.31  E-value=5.2e-05  Score=83.94  Aligned_cols=195  Identities=13%  Similarity=0.064  Sum_probs=122.0

Q ss_pred             EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      |....+.||+++...+.|+++++++.  ..+.+....   .....+.++++.++.|+++....        ..|.+++++
T Consensus        44 ~d~~~~~lywtD~~~~~I~r~~~~g~--~~~~v~~~g---~~~P~GlAvD~~~~~LY~tD~~~--------~~I~v~~~d  110 (628)
T 4a0p_A           44 FDVTDNRIYWTDISLKTISRAFMNGS--ALEHVVEFG---LDYPEGMAVDWLGKNLYWADTGT--------NRIEVSKLD  110 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSC--SCEEEECSS---CSCCCEEEEETTTTEEEEEETTT--------TEEEEEETT
T ss_pred             EECCCCEEEEEECCCCeEEEEECCCC--CcEEEEeCC---CCCcceEEEEeCCCEEEEEECCC--------CEEEEEecC
Confidence            33345689999988889999999865  444433220   12234577888888887764322        679999998


Q ss_pred             CCCcccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979          230 GQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       230 ~g~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      ++.   .+.|. .+.......+..|...+|+|..|..      ..+|+++++++..   ...+..+ -    ..+.....
T Consensus       111 G~~---~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~------~~~I~r~~~dG~~---~~~l~~~-~----~~P~Glal  173 (628)
T 4a0p_A          111 GQH---RQVLVWKDLDSPRALALDPAEGFMYWTEWGG------KPKIDRAAMDGSE---RTTLVPN-V----GRANGLTI  173 (628)
T ss_dssp             STT---CEEEECSSCCCEEEEEEETTTTEEEEEECSS------SCEEEEEETTSCS---CEEEECS-C----SSEEEEEE
T ss_pred             CCc---EEEEEeCCCCCcccEEEccCCCeEEEeCCCC------CCEEEEEeCCCCc---eEEEECC-C----CCcceEEE
Confidence            875   45554 3333344567999888899987642      4579999998763   2333332 2    34567788


Q ss_pred             CCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      +++++.+|.++.  +...|+++|+++...+.+...   ...|      ..+.+     +++.+||+..  ....|+++|.
T Consensus       174 D~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~---l~~P------~glav-----~~~~ly~tD~--~~~~I~~~dk  235 (628)
T 4a0p_A          174 DYAKRRLYWTDL--DTNLIESSNMLGLNREVIADD---LPHP------FGLTQ-----YQDYIYWTDW--SRRSIERANK  235 (628)
T ss_dssp             ETTTTEEEEEET--TTTEEEEEETTSCSCEEEEEC---CSCE------EEEEE-----ETTEEEEEET--TTTEEEEEET
T ss_pred             ccccCEEEEEEC--CCCEEEEEcCCCCceEEeecc---CCCc------eEEEE-----ECCEEEEecC--CCCEEEEEEC
Confidence            888774445565  445799999877655433211   1111      12333     4468888763  3446788886


Q ss_pred             CCCc
Q 006979          389 FGHS  392 (623)
Q Consensus       389 ~~~~  392 (623)
                      .+|+
T Consensus       236 ~tg~  239 (628)
T 4a0p_A          236 TSGQ  239 (628)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            5543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.31  E-value=7.9e-05  Score=72.56  Aligned_cols=198  Identities=12%  Similarity=0.037  Sum_probs=106.2

Q ss_pred             eEEEeCC-EEEE-EeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          149 AFRIFGD-TVIF-SNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       149 ~~~~s~d-~l~f-~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      ..+++++ .+++ .+..++.|++++..++  ....+...   .........++|+|+ |++... .        ..|+++
T Consensus        28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~--~~~~~~~~---~~~~p~~i~~~~~g~-l~v~~~-~--------~~i~~~   92 (270)
T 1rwi_B           28 GVAVDSAGNVYVTSEGMYGRVVKLATGST--GTTVLPFN---GLYQPQGLAVDGAGT-VYVTDF-N--------NRVVTL   92 (270)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECC-------EECCCC---SCCSCCCEEECTTCC-EEEEET-T--------TEEEEE
T ss_pred             ceEECCCCCEEEEccCCCCcEEEecCCCc--ccceEeeC---CcCCcceeEECCCCC-EEEEcC-C--------CEEEEE
Confidence            3445444 6676 5456678999988654  33333221   012345678999998 444332 1        579999


Q ss_pred             EcCCCCcccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          227 ALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       227 dl~~g~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      |.+++.   ...+.. +........++|||+ |++....       ...|++++..+.    ......... .  ..+..
T Consensus        93 d~~~~~---~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~-------~~~i~~~~~~~~----~~~~~~~~~-~--~~p~~  154 (270)
T 1rwi_B           93 AAGSNN---QTVLPFDGLNYPEGLAVDTQGA-VYVADRG-------NNRVVKLAAGSK----TQTVLPFTG-L--NDPDG  154 (270)
T ss_dssp             CTTCSC---CEECCCCSCSSEEEEEECTTCC-EEEEEGG-------GTEEEEECTTCC----SCEECCCCS-C--CSCCC
T ss_pred             eCCCce---EeeeecCCcCCCcceEECCCCC-EEEEECC-------CCEEEEEECCCc----eeEeecccc-C--CCcee
Confidence            998765   444432 223345567999997 6555422       335777754332    111111111 0  24567


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~  385 (623)
                      ..+++||++|+ ++.  +...|+++|++++........  ....      ...+.+.   +++ .+|++..  +...|++
T Consensus       155 i~~~~~g~l~v-~~~--~~~~i~~~~~~~~~~~~~~~~--~~~~------p~~i~~d---~~g-~l~v~~~--~~~~v~~  217 (270)
T 1rwi_B          155 VAVDNSGNVYV-TDT--DNNRVVKLEAESNNQVVLPFT--DITA------PWGIAVD---EAG-TVYVTEH--NTNQVVK  217 (270)
T ss_dssp             EEECTTCCEEE-EEG--GGTEEEEECTTTCCEEECCCS--SCCS------EEEEEEC---TTC-CEEEEET--TTSCEEE
T ss_pred             EEEeCCCCEEE-EEC--CCCEEEEEecCCCceEeeccc--CCCC------ceEEEEC---CCC-CEEEEEC--CCCcEEE
Confidence            88999998554 443  334788999877654433211  1111      1223332   143 6666653  2345888


Q ss_pred             EeCCCCceeec
Q 006979          386 LDDFGHSLSLL  396 (623)
Q Consensus       386 ~d~~~~~~~~l  396 (623)
                      ++.+++....+
T Consensus       218 ~~~~~~~~~~~  228 (270)
T 1rwi_B          218 LLAGSTTSTVL  228 (270)
T ss_dssp             ECTTCSCCEEC
T ss_pred             EcCCCCcceee
Confidence            88877655443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.30  E-value=4.9e-05  Score=75.87  Aligned_cols=242  Identities=9%  Similarity=0.008  Sum_probs=125.1

Q ss_pred             eEEEeCC-EEEEE-------eCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCC-CCEEEEEEeccCCCCCC
Q 006979          149 AFRIFGD-TVIFS-------NYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPR-FNRYVTVREDRRQDALN  218 (623)
Q Consensus       149 ~~~~s~d-~l~f~-------~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPd-G~~l~~v~~~~~~~~~~  218 (623)
                      ..+++++ .+++.       +..++.|+++++.++  ..+.+... ............++|+ |+ |++....       
T Consensus        22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~-------   91 (314)
T 1pjx_A           22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG--KKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMR-------   91 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTC--CEEEEECCEETTEECCEEEEEECSSSSE-EEEEETT-------
T ss_pred             CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC--cEEEEEecccCCCCCCCceEEEecCCCc-EEEEECC-------
Confidence            3444443 67776       445677999998776  55544321 0000123446779999 65 4443321       


Q ss_pred             ceeEEEEEEcCCCCcccceec-ccCC-----CcccceeeCCCCCEEEEEEecCC--------CCCCCceEEEEEEecCCC
Q 006979          219 STTEIVAIALNGQNIQEPKVL-VSGS-----DFYAFPRMDPRGERMAWIEWHHP--------NMPWDKAELWVGYISENG  284 (623)
Q Consensus       219 ~~~~L~~idl~~g~~~~~~~l-~~~~-----~~~~~p~wSPDG~~la~~~~~~~--------~~p~~~~~L~v~d~~~~~  284 (623)
                        ..|+++|.+ ++   .+.+ ....     .......++|||+ |++......        ........|++++.+ + 
T Consensus        92 --~~l~~~d~~-g~---~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-  162 (314)
T 1pjx_A           92 --LGLLVVQTD-GT---FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-  162 (314)
T ss_dssp             --TEEEEEETT-SC---EEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-
T ss_pred             --CCEEEEeCC-CC---EEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-C-
Confidence              369999998 66   4444 3211     1244567999997 555543210        000012568888765 3 


Q ss_pred             ceeeeEEEcCCCCCccccCcCceeC----CCCcEEEEEeCCCCeeeEEEEecC-CCeEEE---Eeeccccc-cccccccc
Q 006979          285 DVYKRVCVAGFDPTIVESPTEPKWS----SKGELFFVTDRKNGFWNLHKWIES-NNEVLA---IYSLDAEF-SRPLWVFG  355 (623)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~ws----~DG~l~~~~~~~~g~~~L~~~d~~-~~~~~~---l~~~~~~~-~~~~w~~~  355 (623)
                      .  ........     .......|+    +||+.+|+++.  +...|+++|++ +++...   +....... ..      
T Consensus       163 ~--~~~~~~~~-----~~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~------  227 (314)
T 1pjx_A          163 Q--MIQVDTAF-----QFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG------  227 (314)
T ss_dssp             C--EEEEEEEE-----SSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCE------
T ss_pred             C--EEEeccCC-----CCcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCCCCC------
Confidence            2  22222211     223567899    99985555554  23467777765 444221   11110000 11      


Q ss_pred             CcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc-eeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 006979          356 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (623)
Q Consensus       356 ~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~-~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~  432 (623)
                      ...+.+.    .++.++++...+  ..|+++|+++++ ...+..+...+..+  +++++.+++....   ...|++++++
T Consensus       228 p~~i~~d----~~G~l~v~~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~l~~~~~~  298 (314)
T 1pjx_A          228 ADGMDFD----EDNNLLVANWGS--SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEB----TTCCEEEEEETT--TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEECS
T ss_pred             CCceEEC----CCCCEEEEEcCC--CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC---CCeEEEEeCC
Confidence            1123332    234566654333  368889988444 44454443334444  4566666655432   2478888876


Q ss_pred             C
Q 006979          433 D  433 (623)
Q Consensus       433 ~  433 (623)
                      .
T Consensus       299 ~  299 (314)
T 1pjx_A          299 R  299 (314)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.30  E-value=6.7e-05  Score=73.10  Aligned_cols=199  Identities=17%  Similarity=0.164  Sum_probs=106.8

Q ss_pred             ccCceEEcCCCcEEE-EeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcE
Q 006979           90 RLGGTAVDGHGRLIW-LESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL  167 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~-l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l  167 (623)
                      .+..+.+++++.+|+ .+..   .+  .|++++..+  ......+.. .      .......+++++ .+++... ++.|
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~---~~--~i~~~~~~~--~~~~~~~~~-~------~~~p~~i~~~~~g~l~v~~~-~~~i   89 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGM---YG--RVVKLATGS--TGTTVLPFN-G------LYQPQGLAVDGAGTVYVTDF-NNRV   89 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSS---SC--EEEEECC-------EECCCC-S------CCSCCCEEECTTCCEEEEET-TTEE
T ss_pred             CccceEECCCCCEEEEccCC---CC--cEEEecCCC--cccceEeeC-C------cCCcceeEECCCCCEEEEcC-CCEE
Confidence            556778887556776 4322   23  366666542  222222211 0      011234555544 6777765 7789


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cCCCcc
Q 006979          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFY  246 (623)
Q Consensus       168 ~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~~~~~  246 (623)
                      ++++.+++  ....+...   ......+..++|+|+ +++.....        ..|++++..+..   ..... .+....
T Consensus        90 ~~~d~~~~--~~~~~~~~---~~~~p~~i~~~~~g~-l~v~~~~~--------~~i~~~~~~~~~---~~~~~~~~~~~p  152 (270)
T 1rwi_B           90 VTLAAGSN--NQTVLPFD---GLNYPEGLAVDTQGA-VYVADRGN--------NRVVKLAAGSKT---QTVLPFTGLNDP  152 (270)
T ss_dssp             EEECTTCS--CCEECCCC---SCSSEEEEEECTTCC-EEEEEGGG--------TEEEEECTTCCS---CEECCCCSCCSC
T ss_pred             EEEeCCCc--eEeeeecC---CcCCCcceEECCCCC-EEEEECCC--------CEEEEEECCCce---eEeeccccCCCc
Confidence            99998765  44444322   012345678999997 44333221        568888765543   22222 222334


Q ss_pred             cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeee
Q 006979          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN  326 (623)
Q Consensus       247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~  326 (623)
                      ....++|||+ |++....       ...|++++.++..    ........ .  ..+..+.+++||.+|+ ++.  +...
T Consensus       153 ~~i~~~~~g~-l~v~~~~-------~~~i~~~~~~~~~----~~~~~~~~-~--~~p~~i~~d~~g~l~v-~~~--~~~~  214 (270)
T 1rwi_B          153 DGVAVDNSGN-VYVTDTD-------NNRVVKLEAESNN----QVVLPFTD-I--TAPWGIAVDEAGTVYV-TEH--NTNQ  214 (270)
T ss_dssp             CCEEECTTCC-EEEEEGG-------GTEEEEECTTTCC----EEECCCSS-C--CSEEEEEECTTCCEEE-EET--TTSC
T ss_pred             eeEEEeCCCC-EEEEECC-------CCEEEEEecCCCc----eEeecccC-C--CCceEEEECCCCCEEE-EEC--CCCc
Confidence            5677999997 6555422       3458888876652    11111111 0  2345678899995554 443  3346


Q ss_pred             EEEEecCCCeEE
Q 006979          327 LHKWIESNNEVL  338 (623)
Q Consensus       327 L~~~d~~~~~~~  338 (623)
                      |+++++++....
T Consensus       215 v~~~~~~~~~~~  226 (270)
T 1rwi_B          215 VVKLLAGSTTST  226 (270)
T ss_dssp             EEEECTTCSCCE
T ss_pred             EEEEcCCCCcce
Confidence            888888765433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.30  E-value=6.5e-05  Score=75.83  Aligned_cols=242  Identities=12%  Similarity=0.097  Sum_probs=127.9

Q ss_pred             EEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCC--C--------------CCeeecceeeCC-CCCEEEEEEec
Q 006979          150 FRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG--E--------------PLVSYADGIFDP-RFNRYVTVRED  211 (623)
Q Consensus       150 ~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~--~--------------~~~~~~d~~~sP-dG~~l~~v~~~  211 (623)
                      .+++++ .++|++..+++|++++.+++  ..+.+.....  .              ...+.....++| +| .|++....
T Consensus        24 i~~d~~g~~l~v~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~~  100 (322)
T 2fp8_A           24 FTFDSTNKGFYTSVQDGRVIKYEGPNS--GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDCY  100 (322)
T ss_dssp             EECCTTCSSEEEECTTSEEEEECCTTT--CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEETT
T ss_pred             EEEcCCCCEEEEEcCCCeEEEECCCCC--ceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEECC
Confidence            444444 45777777788999988765  3433321000  0              001233466887 55 44443221


Q ss_pred             cCCCCCCceeEEEEEEcCCCCcccceecccC---C--CcccceeeCC-CCCEEEEEEecCC-CC---------CCCceEE
Q 006979          212 RRQDALNSTTEIVAIALNGQNIQEPKVLVSG---S--DFYAFPRMDP-RGERMAWIEWHHP-NM---------PWDKAEL  275 (623)
Q Consensus       212 ~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~---~--~~~~~p~wSP-DG~~la~~~~~~~-~~---------p~~~~~L  275 (623)
                               ..|+++|++++.   .+.+...   .  .+.....+.| ||+ |++...... ..         .-....|
T Consensus       101 ---------~~i~~~d~~~g~---~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v  167 (322)
T 2fp8_A          101 ---------YHLSVVGSEGGH---ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRL  167 (322)
T ss_dssp             ---------TEEEEECTTCEE---CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred             ---------CCEEEEeCCCCE---EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceE
Confidence                     348899988775   4444321   1  2234567999 986 666643210 00         0013679


Q ss_pred             EEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCC---eEEEEeecccccccccc
Q 006979          276 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN---EVLAIYSLDAEFSRPLW  352 (623)
Q Consensus       276 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~---~~~~l~~~~~~~~~~~w  352 (623)
                      ++++.+++.   ...+..+.     .....+.|++||+.+|+++.  +..+|+++++++.   ..+.+...    .+|  
T Consensus       168 ~~~d~~~~~---~~~~~~~~-----~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~----~gP--  231 (322)
T 2fp8_A          168 IKYDPSTKE---TTLLLKEL-----HVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKI----PNP--  231 (322)
T ss_dssp             EEEETTTTE---EEEEEEEE-----SCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEEC----SSE--
T ss_pred             EEEeCCCCE---EEEeccCC-----ccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeC----CCC--
Confidence            998876551   22222221     23457899999996666665  4457889988753   23333211    011  


Q ss_pred             cccCcceeEEeecCCCCEEEEEEEE--------CCeEEEEEEeCCCCceeecccCCc----ceEeeeecCCEEEEEEecC
Q 006979          353 VFGINSYEIIQSHGEKNLIACSYRQ--------NGRSYLGILDDFGHSLSLLDIPFT----DIDNITLGNDCLFVEGASG  420 (623)
Q Consensus       353 ~~~~~~~~~l~~s~~~~~l~~~~~~--------~g~~~L~~~d~~~~~~~~lt~~~~----~v~~~~~~~~~~~~~~~s~  420 (623)
                          +.+.+-   ++| .||++...        .....|+++|.++..++.+..+..    ....+...++++|+...  
T Consensus       232 ----~gi~~d---~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~--  301 (322)
T 2fp8_A          232 ----GNIKRN---ADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL--  301 (322)
T ss_dssp             ----EEEEEC---TTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECS--
T ss_pred             ----CCeEEC---CCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeec--
Confidence                223332   244 46666544        225679999998666666655432    23333335667766532  


Q ss_pred             CCCCeEEEEEcCCC
Q 006979          421 VEPSSVAKVTLDDH  434 (623)
Q Consensus       421 ~~~~~ly~~~l~~~  434 (623)
                       ....|.+++++..
T Consensus       302 -~~~~i~~~~~~~~  314 (322)
T 2fp8_A          302 -FHGSVGILVYDKK  314 (322)
T ss_dssp             -SCSEEEEEEC---
T ss_pred             -CCCceEEEecccc
Confidence             2246777776543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.29  E-value=5.7e-05  Score=76.84  Aligned_cols=152  Identities=7%  Similarity=-0.016  Sum_probs=90.9

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      ..+++...++.|.++|+.++  ....+...  ..........|+|||+.++....+         ..|.++|+.+++.  
T Consensus       140 ~~l~s~s~dg~i~~wd~~~~--~~~~~~~~--~~~~~i~~~~~~pdg~~lasg~~d---------g~i~iwd~~~~~~--  204 (343)
T 3lrv_A          140 EYFIWADNRGTIGFQSYEDD--SQYIVHSA--KSDVEYSSGVLHKDSLLLALYSPD---------GILDVYNLSSPDQ--  204 (343)
T ss_dssp             CEEEEEETTCCEEEEESSSS--CEEEEECC--CSSCCCCEEEECTTSCEEEEECTT---------SCEEEEESSCTTS--
T ss_pred             CEEEEEeCCCcEEEEECCCC--cEEEEEec--CCCCceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCCC--
Confidence            45566667888999999876  44332221  112236678899999987765443         4588899988762  


Q ss_pred             c-eeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc--CceeCCC
Q 006979          236 P-KVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT--EPKWSSK  311 (623)
Q Consensus       236 ~-~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ws~D  311 (623)
                      . ..+.. ....+....|||||++|+... +.        .|.+.|+.....+.....+....    ..+.  ...|+|+
T Consensus       205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~--------~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  271 (343)
T 3lrv_A          205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ--------TVVCFDLRKDVGTLAYPTYTIPE----FKTGTVTYDIDDS  271 (343)
T ss_dssp             CCEECCCCTTSCEEEEEECTTSSEEEEEE-SS--------BEEEEETTSSTTCBSSCCCBC---------CCEEEEECTT
T ss_pred             CccEEeccCCCCEEEEEEeCCCCEEEEEe-CC--------eEEEEEcCCCCcceeeccccccc----ccccceEEEECCC
Confidence            2 34443 344566788999999988765 32        38888988763211111111111    1222  3899999


Q ss_pred             CcEEEEEeCCCCeeeEEEEecCCC
Q 006979          312 GELFFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       312 G~l~~~~~~~~g~~~L~~~d~~~~  335 (623)
                      |++++.....++.-+||.++....
T Consensus       272 g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTC
T ss_pred             CCEEEEecCCCCcEEEEEEccccc
Confidence            995444332135566776654333

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.29  E-value=6.7e-05  Score=77.15  Aligned_cols=256  Identities=4%  Similarity=-0.141  Sum_probs=127.4

Q ss_pred             CEEEEEeCCCC----cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEecc-CCCCCCceeEEEEEEcC
Q 006979          155 DTVIFSNYKDQ----RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALN  229 (623)
Q Consensus       155 d~l~f~~~~~~----~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~-~~~~~~~~~~L~~idl~  229 (623)
                      .++|+.+..++    +++++|++++ .....+.-+    . . ..+.+||||++++...... .....+..+.|.++|+.
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~-~v~~~i~vG----~-~-P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~  104 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCG-VTLGHSLGA----F-L-SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV  104 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTT-EEEEEEEEC----T-T-CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred             CeEEEECCccCCccceEEEEECCCC-eEEEEEeCC----C-C-CceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            36677766555    7999999876 233344433    1 1 1488999999887664211 00011123789999999


Q ss_pred             CCCcccceecccC--C-----CcccceeeCCCCCEEEEEEecCCCCCCCceEEEE--EEecC------CCc--e---ee-
Q 006979          230 GQNIQEPKVLVSG--S-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV--GYISE------NGD--V---YK-  288 (623)
Q Consensus       230 ~g~~~~~~~l~~~--~-----~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v--~d~~~------~~~--~---~~-  288 (623)
                      +++.  ...+.-+  .     ....+..+||||++|+......      ...|.+  +|..+      ++.  +   .. 
T Consensus       105 T~~v--v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~------~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~  176 (368)
T 1mda_H          105 TFLP--IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS------SAAAGLSVPGASDDQLTKSASCFHIHPGAAA  176 (368)
T ss_dssp             TCCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS------SCEEEEEETTTEEEEEEECSSCCCCEEEETT
T ss_pred             CCCE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC------CCeEEEEEEchhhceEEECCCceEEccCCCe
Confidence            9874  3333211  1     2234567999999987765321      122444  44322      000  0   00 


Q ss_pred             -----------eEEEcCCCCCccccC-----------cCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeeccc
Q 006979          289 -----------RVCVAGFDPTIVESP-----------TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA  345 (623)
Q Consensus       289 -----------~~~~~~~~~~~~~~~-----------~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~  345 (623)
                                 ..+.....+.|...+           ..|..++++. ++|++.     ..++.+|..++..+.+..-..
T Consensus       177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-----~~V~viD~~~~~~~v~~~~~~  251 (368)
T 1mda_H          177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-----SSILQGDIPAAGATMKAAIDG  251 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-----SCCEEEECCSSCCEEECCCCS
T ss_pred             EEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-----CEEEEEECCCCcceEEEEEEe
Confidence                       000000000000000           0111133333 444432     246666765543332221100


Q ss_pred             c---cccccccccC-cceeEEeecCCCCEEEEEEEEC-C-----eEEEEEEeCCCCce-eecccCCcceEe--eeecCCE
Q 006979          346 E---FSRPLWVFGI-NSYEIIQSHGEKNLIACSYRQN-G-----RSYLGILDDFGHSL-SLLDIPFTDIDN--ITLGNDC  412 (623)
Q Consensus       346 ~---~~~~~w~~~~-~~~~~l~~s~~~~~l~~~~~~~-g-----~~~L~~~d~~~~~~-~~lt~~~~~v~~--~~~~~~~  412 (623)
                      .   .....|.+.. ..+.+.   ++++++|+...+. +     ...+.++|++++++ ..|..+.. ...  +++++++
T Consensus       252 ~~~~~~~~~~~p~g~~~v~~s---~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~-p~gi~~s~Dg~~  327 (368)
T 1mda_H          252 NESGRKADNFRSAGFQMVAKL---KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD-SDAIIAAQDGAS  327 (368)
T ss_dssp             SCTHHHHTTEEECSSSCEEEE---TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE-ECEEEECCSSSC
T ss_pred             ccccccccccccCcceeeEEc---CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC-cceEEECCCCCE
Confidence            0   0011222211 113333   4888888876634 4     34555999988765 45554432 222  3778887


Q ss_pred             EEEEEecCCCCCeEEEEEcCCCcc
Q 006979          413 LFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       413 ~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      +++.....  ...|.++|+++++.
T Consensus       328 l~va~~~~--~~~VsVID~~t~kv  349 (368)
T 1mda_H          328 DNYANSAG--TEVLDIYDAASDQD  349 (368)
T ss_dssp             EEEEEETT--TTEEEEEESSSCEE
T ss_pred             EEEEccCC--CCeEEEEECCCCcE
Confidence            87776511  35799999988763

>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis}

Probab=98.28  E-value=2.9e-06  Score=82.44  Aligned_cols=111  Identities=11%  Similarity=0.067  Sum_probs=74.5

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCce--EEEEECCCCCCC--C-ch--hHHH-hh----ccC--Ccc--chHHHHH
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGW--AFVDVNYGGSTG--Y-GR--EFRE-RL----LGR--WGI--VDVNDCC  559 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~--~v~~~d~rGs~~--~-g~--~~~~-~~----~~~--~g~--~~~~D~~  559 (623)
                      +-||++||.  ......|...++.|+++||  .|+.+|.++.|.  + |.  ...+ ..    ..+  -+.  ...+++.
T Consensus         7 ~pvvliHG~--~~~~~~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l~   84 (249)
T 3fle_A            7 TATLFLHGY--GGSERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWIK   84 (249)
T ss_dssp             EEEEEECCT--TCCGGGTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHHH
T ss_pred             CcEEEECCC--CCChhHHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHHH
Confidence            457779997  4455578889999999997  477777665432  1 11  0000 00    000  011  1356788


Q ss_pred             HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC-----ceeEEEecccCCCH
Q 006979          560 SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD-----TFKAGASLYGVSIP  610 (623)
Q Consensus       560 ~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~-----~f~a~v~~~g~~d~  610 (623)
                      ++++++.++-.  .+++.++||||||.+++.++ .+++     .++..|.+.+..+-
T Consensus        85 ~~i~~l~~~~~--~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g  139 (249)
T 3fle_A           85 EVLSQLKSQFG--IQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNG  139 (249)
T ss_dssp             HHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTC
T ss_pred             HHHHHHHHHhC--CCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCC
Confidence            88999987633  46999999999999999888 6653     78999998876543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.28  E-value=0.00037  Score=72.50  Aligned_cols=288  Identities=10%  Similarity=-0.007  Sum_probs=141.5

Q ss_pred             EeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCC--C---CCCe-eecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--G---EPLV-SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       152 ~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~--~---~~~~-~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      ...+.+++....+++||++|+++....++....-.  +   .... +-....++||| .++....+..   .+..+.|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~---g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEE---GEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETT---SCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcC---CCCCCeEEE
Confidence            33457888888889999999875311222211100  0   0001 22234689999 3332223321   123478999


Q ss_pred             EEcCCCCcccceecccC--C-CcccceeeCCCCCEEEEEEecCCC------CCC-----CceEEEEEEecCCCceeeeEE
Q 006979          226 IALNGQNIQEPKVLVSG--S-DFYAFPRMDPRGERMAWIEWHHPN------MPW-----DKAELWVGYISENGDVYKRVC  291 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~--~-~~~~~p~wSPDG~~la~~~~~~~~------~p~-----~~~~L~v~d~~~~~~~~~~~~  291 (623)
                      +|.++.++  +..+..+  . .+-....|+||++.++-..|-.|.      ++.     ...+|.++|++++..  ...+
T Consensus       169 lD~~T~~v--~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~--~~tI  244 (462)
T 2ece_A          169 LDHYSFEP--LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR--IHSL  244 (462)
T ss_dssp             ECTTTCCE--EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE--EEEE
T ss_pred             EECCCCeE--EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE--eeEE
Confidence            99998873  3334322  2 333456789999966544432111      111     256799999987521  2223


Q ss_pred             EcCCCCCccccCcCc--eeCCCCc-EEEEEe-----CCCCeeeEEEEecCCCeEEEEe---eccccccc--c----cc--
Q 006979          292 VAGFDPTIVESPTEP--KWSSKGE-LFFVTD-----RKNGFWNLHKWIESNNEVLAIY---SLDAEFSR--P----LW--  352 (623)
Q Consensus       292 ~~~~~~~~~~~~~~~--~ws~DG~-l~~~~~-----~~~g~~~L~~~d~~~~~~~~l~---~~~~~~~~--~----~w--  352 (623)
                      ..+.. .  .....+  .++|||+ .|+...     . ++.-.++.+|  .++.+.+.   .....+..  +    .+  
T Consensus       245 ~vg~~-g--~~P~~i~f~~~Pdg~~aYV~~e~~~~~L-ss~V~v~~~d--~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~  318 (462)
T 2ece_A          245 TLGEE-N--RMALELRPLHDPTKLMGFINMVVSLKDL-SSSIWLWFYE--DGKWNAEKVIEIPAEPLEGNLPEILKPFKA  318 (462)
T ss_dssp             ESCTT-E--EEEEEEEECSSTTCCEEEEEEEEETTTC-CEEEEEEEEE--TTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred             ecCCC-C--CccceeEeeECCCCCEEEEEEeeeccCC-CceEEEEEec--CCceeEEEEEeCCCcccccccccccccccc
Confidence            33322 1  122233  4599999 444444     3 3433344444  35433222   11100000  0    00  


Q ss_pred             -cccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC-CCcee---ecccC-----------C-----cceEeeeecCC
Q 006979          353 -VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLS---LLDIP-----------F-----TDIDNITLGND  411 (623)
Q Consensus       353 -~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~-~~~~~---~lt~~-----------~-----~~v~~~~~~~~  411 (623)
                       ......+.+   ++|++.||++....+  .|.++|.. .++.+   ++..+           .     ..--.++++++
T Consensus       319 ~~~~pa~I~l---S~DGrfLYVSnrg~d--~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk  393 (462)
T 2ece_A          319 VPPLVTDIDI---SLDDKFLYLSLWGIG--EVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR  393 (462)
T ss_dssp             ECCCCCCEEE---CTTSCEEEEEETTTT--EEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS
T ss_pred             CCCceeEEEE---CCCCCEEEEEeCCCC--EEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC
Confidence             011223333   458888887764444  55566653 32222   33332           0     11223488899


Q ss_pred             EEEEEEe-------c---CCCCCeEEEE--EcCCCcceeeeeEEEeccCCCCccCCCCCCCcEEEEeecC
Q 006979          412 CLFVEGA-------S---GVEPSSVAKV--TLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE  469 (623)
Q Consensus       412 ~~~~~~~-------s---~~~~~~ly~~--~l~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  469 (623)
                      ++|+..+       .   ......++++  |.++| ++ ++..-.++      +..   ..+.+++|+..
T Consensus       394 ~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~-~~~~f~vd------f~~---~~~h~~r~~gg  452 (462)
T 2ece_A          394 RVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LE-IDKEFFVD------FGE---ARSHQVRLSGG  452 (462)
T ss_dssp             EEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EE-EEEEEEEE------CTT---SEEEEEEETTC
T ss_pred             EEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ce-eCCCEEee------ccc---CcceeeecCCC
Confidence            8888772       1   2334567766  55566 44 43222221      111   57778888653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.25  E-value=2.8e-06  Score=87.58  Aligned_cols=159  Identities=11%  Similarity=0.171  Sum_probs=84.6

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~  271 (623)
                      ......|+|||++|+....+         ..|.++|+.++.......+......+...+|+|||++|+....|.      
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d---------~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~------   77 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTAT---------NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR------   77 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSS---------SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS------
T ss_pred             cEEEEEECCCCCEEEEecCC---------CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC------
Confidence            35668899999988765443         346677777662111333443344566788999999998776443      


Q ss_pred             ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe----EEEEee-cccc
Q 006979          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE----VLAIYS-LDAE  346 (623)
Q Consensus       272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~----~~~l~~-~~~~  346 (623)
                        .|.++|+..+........+.+..    ..+....|+|||++++.... ++.  |..+|..+++    .+.+.. ....
T Consensus        78 --~v~vwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~h~~~  148 (377)
T 3dwl_C           78 --NAYVYEKRPDGTWKQTLVLLRLN----RAATFVRWSPNEDKFAVGSG-ARV--ISVCYFEQENDWWVSKHLKRPLRST  148 (377)
T ss_dssp             --SEEEC------CCCCEEECCCCS----SCEEEEECCTTSSCCEEEES-SSC--EEECCC-----CCCCEEECSSCCSC
T ss_pred             --eEEEEEcCCCCceeeeeEecccC----CceEEEEECCCCCEEEEEec-CCe--EEEEEECCcccceeeeEeecccCCC
Confidence              27777887663111233333433    56778899999994444443 344  4455655554    233332 2222


Q ss_pred             cccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       347 ~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                      +....|.            |+++.| ++...++.-++|-++
T Consensus       149 v~~~~~~------------~~~~~l-~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          149 ILSLDWH------------PNNVLL-AAGCADRKAYVLSAY  176 (377)
T ss_dssp             EEEEEEC------------TTSSEE-EEEESSSCEEEEEEC
T ss_pred             eEEEEEc------------CCCCEE-EEEeCCCEEEEEEEE
Confidence            3223333            265544 445556766666553

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.25  E-value=0.00013  Score=73.07  Aligned_cols=205  Identities=11%  Similarity=0.004  Sum_probs=111.8

Q ss_pred             CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC---CEEEEEeCCC
Q 006979           88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYKD  164 (623)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~---d~l~f~~~~~  164 (623)
                      ...+..+.|+|++.++..-..   +|...+|.....  .....+...     -..|...+.+..+++   +.++++...+
T Consensus        11 ~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~--~~~~~~~~~-----~~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A           11 DDLVHDVVYDFYGRHVATCSS---DQHIKVFKLDKD--TSNWELSDS-----WRAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             SSCEEEEEECSSSSEEEEEET---TSEEEEEEECSS--SCCEEEEEE-----EECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ccceeEEEEcCCCCEEEEeeC---CCeEEEEECCCC--CCcceecce-----eccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            345678889984444433322   577778876543  111111100     001222344556654   4566666678


Q ss_pred             CcEEEEeCCCCCCC--------ceecCCCCCCCCeeecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 006979          165 QRLYKHSIDSKDSS--------PLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ  234 (623)
Q Consensus       165 ~~l~~~d~~~g~~~--------~~~Lt~~~~~~~~~~~d~~~sPd--G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~  234 (623)
                      +.|.++|+.++...        ...+...    ........|+|+  ++.++....+         ..|.++|+.+++. 
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iwd~~~~~~-  146 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDS----KGSLYSVKFAPAHLGLKLACLGND---------GILRLYDALEPSD-  146 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------CEEEEEECSSTTC-
T ss_pred             CeEEEEecCCCcccccccCcceeeeeccc----CCceeEEEEcCCCCCcEEEEecCC---------CcEEEecCCChHH-
Confidence            88999998765100        1222221    334667889999  9888876554         5688889877652 


Q ss_pred             cceecc-------------cCCCcccceeeCCC---CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979          235 EPKVLV-------------SGSDFYAFPRMDPR---GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (623)
Q Consensus       235 ~~~~l~-------------~~~~~~~~p~wSPD---G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~  298 (623)
                       ...+.             ..........|+|+   ++.|+....+        ..+...+...+ .......+.+..  
T Consensus       147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~h~--  214 (351)
T 3f3f_A          147 -LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE--------QAIIYQRGKDG-KLHVAAKLPGHK--  214 (351)
T ss_dssp             -TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT--------EEEEEEECTTS-CEEEEEECCCCC--
T ss_pred             -hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC--------CcEEEEccCCC-ceeeeeecCCCC--
Confidence             11111             11123445679998   8877766522        22433333332 211223333333  


Q ss_pred             ccccCcCceeCCCC----cEEEEEeCCCCeeeEEEEe
Q 006979          299 IVESPTEPKWSSKG----ELFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       299 ~~~~~~~~~ws~DG----~l~~~~~~~~g~~~L~~~d  331 (623)
                        ..+....|+|+|    ++++.... +|.-.+|.+.
T Consensus       215 --~~i~~~~~~p~~~~~~~~l~s~~~-dg~i~iwd~~  248 (351)
T 3f3f_A          215 --SLIRSISWAPSIGRWYQLIATGCK-DGRIRIFKIT  248 (351)
T ss_dssp             --SCEEEEEECCCSSCSSEEEEEEET-TSCEEEEEEE
T ss_pred             --cceeEEEECCCCCCcceEEEEEcC-CCeEEEEeCC
Confidence              466788999998    65555554 5665665443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.24  E-value=0.00026  Score=70.29  Aligned_cols=226  Identities=11%  Similarity=0.025  Sum_probs=117.1

Q ss_pred             eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCc-eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~-~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      ..+|+++.++.+. .++.|+++|+.++  +. +.+...  ..........|+|+|++++....+         ..+.+.|
T Consensus        30 ~l~WS~~~~lAvg-~D~tV~iWd~~tg--~~~~~~~~~--~~~~~V~~v~~~~~~~~l~sgs~D---------g~v~iw~   95 (318)
T 4ggc_A           30 LVDWSSGNVLAVA-LDNSVYLWSASSG--DILQLLQME--QPGEYISSVAWIKEGNYLAVGTSS---------AEVQLWD   95 (318)
T ss_dssp             CEEECTTSEEEEE-ETTEEEEEETTTC--CEEEEEECC--STTCCEEEEEECTTSSEEEEEETT---------SEEEEEE
T ss_pred             EEEECCCCEEEEE-eCCEEEEEECCCC--CEEEEEEec--CCCCeEEEEEECCCCCEEEEEECC---------CcEEEee
Confidence            4566766544444 4778999999987  43 333321  113346678899999988776554         3455555


Q ss_pred             cCCCCcccceecc-----------------------------------------cCCCcccceeeCCCCCEEEEEEecCC
Q 006979          228 LNGQNIQEPKVLV-----------------------------------------SGSDFYAFPRMDPRGERMAWIEWHHP  266 (623)
Q Consensus       228 l~~g~~~~~~~l~-----------------------------------------~~~~~~~~p~wSPDG~~la~~~~~~~  266 (623)
                      +.+++.  ++.+.                                         ..........|+++|+.|+....|. 
T Consensus        96 ~~~~~~--~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-  172 (318)
T 4ggc_A           96 VQQQKR--LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN-  172 (318)
T ss_dssp             TTTTEE--EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred             cCCcee--EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc-
Confidence            555431  11111                                         1111223345777877766554332 


Q ss_pred             CCCCCceEEEEEEecCCCce-eeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecc
Q 006979          267 NMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD  344 (623)
Q Consensus       267 ~~p~~~~~L~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~  344 (623)
                             .|.+.|+..+... ..........    ..+....|++++. ++..... .....|..+|.............
T Consensus       173 -------~i~iwd~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~~~~~~~~~~~~  240 (318)
T 4ggc_A          173 -------LVNVWPSAPGEGGWVPLQTFTQHQ----GAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAVDAH  240 (318)
T ss_dssp             -------CEEEEESSCBTTBSCCSEEECCCC----SCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETTTCCEEEEEECS
T ss_pred             -------ceeEEECCCCcccccceeeecccC----CceEEEEecCCCCcEEEEEec-CCCCEEEEEecccccccccccce
Confidence                   2667777654221 1112222222    3456678888877 6554433 23334555666666544433332


Q ss_pred             cccccccccccCcceeEEeecCCCCEEEEEEE-ECCeEEEEEEeCCCCce-eecccCCcceEee--eecCCEEEEEEe
Q 006979          345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGA  418 (623)
Q Consensus       345 ~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~-~~g~~~L~~~d~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~~~~  418 (623)
                      ..+....|.            ++++.++..+. .++  .|+++|..+++. ..+......+..+  ++++..+ ++++
T Consensus       241 ~~v~~~~~~------------~~~~~~~~~sg~~d~--~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l-~S~s  303 (318)
T 4ggc_A          241 SQVCSILWS------------PHYKELISGHGFAQN--QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV-ASAA  303 (318)
T ss_dssp             SCEEEEEEE------------TTTTEEEEEECTTTC--CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE-EEEE
T ss_pred             eeeeeeeec------------ccccceEEEEEcCCC--EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE-EEEe
Confidence            222222222            26666665542 334  456668776654 4455444456655  5555543 3443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.24  E-value=0.00012  Score=72.21  Aligned_cols=210  Identities=12%  Similarity=0.045  Sum_probs=109.4

Q ss_pred             ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEe--CCEEEEEeCC-CCc
Q 006979           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYK-DQR  166 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s--~d~l~f~~~~-~~~  166 (623)
                      .+..+.+++++.+|+.+..   +++  |.+++..  ++....++..-....  +......++++  ++.+++.... ++.
T Consensus        31 ~p~~v~~~~~g~l~v~~~~---~~~--i~~~d~~--g~~~~~~~~~~~~~~--~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           31 EPSGVAVNAQNDIIVADTN---NHR--IQIFDKE--GRFKFQFGECGKRDS--QLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             CEEEEEECTTCCEEEEEGG---GTE--EEEECTT--SCEEEEECCBSSSTT--CBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             CCceEEECCCCCEEEEECC---CCE--EEEECCC--CcEEEEecccCCCcc--cccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            3456777775567776543   233  5555544  233222221100000  00012234553  3477777643 567


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc--CCC
Q 006979          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSD  244 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~--~~~  244 (623)
                      |++++.++.  ..+.+...   ......+..++|+|+ +++.....        ..|+++|.++..   ...+..  ...
T Consensus       102 i~~~d~~g~--~~~~~~~~---~~~~~~~i~~~~~g~-l~v~~~~~--------~~i~~~~~~g~~---~~~~~~~~~~~  164 (286)
T 1q7f_A          102 IQIYNQYGQ--FVRKFGAT---ILQHPRGVTVDNKGR-IIVVECKV--------MRVIIFDQNGNV---LHKFGCSKHLE  164 (286)
T ss_dssp             EEEECTTSC--EEEEECTT---TCSCEEEEEECTTSC-EEEEETTT--------TEEEEECTTSCE---EEEEECTTTCS
T ss_pred             EEEECCCCc--EEEEecCc---cCCCceEEEEeCCCC-EEEEECCC--------CEEEEEcCCCCE---EEEeCCCCccC
Confidence            999995432  33334321   112345678999997 43332211        569999976543   333322  222


Q ss_pred             cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCe
Q 006979          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF  324 (623)
Q Consensus       245 ~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~  324 (623)
                      ......++|||+ |++....       ...|++++.++.    ....+......  ..+..+.+++||++++. +. .+.
T Consensus       165 ~p~~i~~~~~g~-l~v~~~~-------~~~i~~~~~~g~----~~~~~~~~g~~--~~p~~i~~d~~G~l~v~-~~-~~~  228 (286)
T 1q7f_A          165 FPNGVVVNDKQE-IFISDNR-------AHCVKVFNYEGQ----YLRQIGGEGIT--NYPIGVGINSNGEILIA-DN-HNN  228 (286)
T ss_dssp             SEEEEEECSSSE-EEEEEGG-------GTEEEEEETTCC----EEEEESCTTTS--CSEEEEEECTTCCEEEE-EC-SSS
T ss_pred             CcEEEEECCCCC-EEEEECC-------CCEEEEEcCCCC----EEEEEccCCcc--CCCcEEEECCCCCEEEE-eC-CCC
Confidence            345567999997 6555322       345888887543    22233221100  24457789999976554 43 122


Q ss_pred             eeEEEEecCCCeEEEEe
Q 006979          325 WNLHKWIESNNEVLAIY  341 (623)
Q Consensus       325 ~~L~~~d~~~~~~~~l~  341 (623)
                      ..|.++|+++...+.+.
T Consensus       229 ~~i~~~~~~g~~~~~~~  245 (286)
T 1q7f_A          229 FNLTIFTQDGQLISALE  245 (286)
T ss_dssp             CEEEEECTTSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEc
Confidence            37888887665555443

>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39

Probab=98.24  E-value=2.6e-06  Score=73.86  Aligned_cols=81  Identities=7%  Similarity=-0.111  Sum_probs=51.3

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++| +  ...  .|...   ++ ++|.|+.+|+||.|......     ..     .++..+.+..+++.  .+.++
T Consensus        23 ~~vv~~H-~--~~~--~~~~~---l~-~~~~v~~~d~~G~G~s~~~~-----~~-----~~~~~~~~~~~~~~--~~~~~   81 (131)
T 2dst_A           23 PPVLLVA-E--EAS--RWPEA---LP-EGYAFYLLDLPGYGRTEGPR-----MA-----PEELAHFVAGFAVM--MNLGA   81 (131)
T ss_dssp             SEEEEES-S--SGG--GCCSC---CC-TTSEEEEECCTTSTTCCCCC-----CC-----HHHHHHHHHHHHHH--TTCCS
T ss_pred             CeEEEEc-C--CHH--HHHHH---Hh-CCcEEEEECCCCCCCCCCCC-----CC-----HHHHHHHHHHHHHH--cCCCc
Confidence            6789999 3  111  22222   44 45999999999966542211     00     44444444443332  23469


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCc
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDT  597 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~  597 (623)
                      +.++|||+||.+++.++ .+|.+
T Consensus        82 ~~lvG~S~Gg~~a~~~a~~~p~l  104 (131)
T 2dst_A           82 PWVLLRGLGLALGPHLEALGLRA  104 (131)
T ss_dssp             CEEEECGGGGGGHHHHHHTTCCE
T ss_pred             cEEEEEChHHHHHHHHHhcCCcE
Confidence            99999999999999999 77853

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.22  E-value=4.3e-05  Score=77.67  Aligned_cols=151  Identities=11%  Similarity=0.068  Sum_probs=91.5

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCC----CCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPR----FNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPd----G~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      ..++....++.|.++++.++ ...+.+... ............|+|+    |+.|+....+         ..|.++|+.+
T Consensus        35 ~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---------g~i~v~d~~~  104 (366)
T 3k26_A           35 PLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR---------GIIRIINPIT  104 (366)
T ss_dssp             CEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT---------CEEEEECTTT
T ss_pred             ceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC---------CEEEEEEchh
Confidence            34444445567888988755 233333321 0001234667889999    5566554443         5789999988


Q ss_pred             CCcccceecccCCCcccceeeCC-CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE---cCCCCCccccCcCc
Q 006979          231 QNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV---AGFDPTIVESPTEP  306 (623)
Q Consensus       231 g~~~~~~~l~~~~~~~~~p~wSP-DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~  306 (623)
                      ++.  ...+......+....|+| |++.|+....+.        .|.++|+..+.   ....+   .+..    ..+...
T Consensus       105 ~~~--~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~~~---~~~~~~~~~~~~----~~v~~~  167 (366)
T 3k26_A          105 MQC--IKHYVGHGNAINELKFHPRDPNLLLSVSKDH--------ALRLWNIQTDT---LVAIFGGVEGHR----DEVLSA  167 (366)
T ss_dssp             CCE--EEEEESCCSCEEEEEECSSCTTEEEEEETTS--------CEEEEETTTTE---EEEEECSTTSCS----SCEEEE
T ss_pred             ceE--eeeecCCCCcEEEEEECCCCCCEEEEEeCCC--------eEEEEEeecCe---EEEEeccccccc----CceeEE
Confidence            762  334443445566788999 899887665332        38888988762   33333   2333    567789


Q ss_pred             eeCCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                      .|+|||++++.... ++.  |..+|+.+++
T Consensus       168 ~~~~~~~~l~~~~~-dg~--i~i~d~~~~~  194 (366)
T 3k26_A          168 DYDLLGEKIMSCGM-DHS--LKLWRINSKR  194 (366)
T ss_dssp             EECTTSSEEEEEET-TSC--EEEEESCSHH
T ss_pred             EECCCCCEEEEecC-CCC--EEEEECCCCc
Confidence            99999985555544 354  5555665543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.22  E-value=5.9e-05  Score=82.41  Aligned_cols=235  Identities=10%  Similarity=-0.045  Sum_probs=128.4

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC--CCCc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN--GQNI  233 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~--~g~~  233 (623)
                      .++++...++.|+++|++++ .....+..+     .....+.+||||++++...++         ..|.++|+.  +++.
T Consensus       168 ~~~V~~~~~~~V~viD~~t~-~v~~~i~~g-----~~p~~v~~SpDGr~lyv~~~d---------g~V~viD~~~~t~~~  232 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTY-EIKTVLDTG-----YAVHISRLSASGRYLFVIGRD---------GKVNMIDLWMKEPTT  232 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTC-CEEEEEECS-----SCEEEEEECTTSCEEEEEETT---------SEEEEEETTSSSCCE
T ss_pred             eEEEEeCCCCeEEEEECCCC-eEEEEEeCC-----CCccceEECCCCCEEEEEcCC---------CeEEEEECCCCCCcE
Confidence            56677777888999999886 223344432     122357899999987765421         569999995  5542


Q ss_pred             ccceecccCCCcccceeeC----CCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCC---CCC-c--cccC
Q 006979          234 QEPKVLVSGSDFYAFPRMD----PRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF---DPT-I--VESP  303 (623)
Q Consensus       234 ~~~~~l~~~~~~~~~p~wS----PDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~---~~~-~--~~~~  303 (623)
                        +..+..+.+ ..+..+|    |||++|+......       ..+.++|..+...+  ..+..+.   +.. .  ...+
T Consensus       233 --v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~-------~~v~ViD~~t~~~~--~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          233 --VAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWP-------PQYVIMDGETLEPK--KIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             --EEEEECCSE-EEEEEECCSTTCTTTEEEEEEEET-------TEEEEEETTTCCEE--EEEECCEECTTTCCEESCCCE
T ss_pred             --eEEEecCCC-CceeEEccccCCCCCEEEEEEccC-------CeEEEEECCCCcEE--EEEeccccccccccccCCCce
Confidence              334433332 3356799    7999987765332       34788887665321  1121111   000 0  0122


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      .....++++..+++...  ...+|+.+|..+.+...++.-..  +..     .....|   ++++++++.+...  ...|
T Consensus       301 a~i~~s~~~~~~vv~~~--~~g~v~~vd~~~~~~~~v~~i~~--~~~-----~~d~~~---~pdgr~~~va~~~--sn~V  366 (567)
T 1qks_A          301 AAILASHYRPEFIVNVK--ETGKILLVDYTDLNNLKTTEISA--ERF-----LHDGGL---DGSHRYFITAANA--RNKL  366 (567)
T ss_dssp             EEEEECSSSSEEEEEET--TTTEEEEEETTCSSEEEEEEEEC--CSS-----EEEEEE---CTTSCEEEEEEGG--GTEE
T ss_pred             EEEEEcCCCCEEEEEec--CCCeEEEEecCCCccceeeeeec--ccc-----ccCceE---CCCCCEEEEEeCC--CCeE
Confidence            34556777664444444  33467788876543222221100  000     011222   2388877777643  4457


Q ss_pred             EEEeCCCCceee-ccc-CCc-----ceEeeeecCCEEEEEEecCCCCCeEEEEEcCC
Q 006979          384 GILDDFGHSLSL-LDI-PFT-----DIDNITLGNDCLFVEGASGVEPSSVAKVTLDD  433 (623)
Q Consensus       384 ~~~d~~~~~~~~-lt~-~~~-----~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~  433 (623)
                      .++|.+++++.. +.. +..     ...-+.++++.++++..-  ....|.+++.+.
T Consensus       367 ~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~--g~~~Vsvid~~~  421 (567)
T 1qks_A          367 VVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHM--GDDSVALIGTDP  421 (567)
T ss_dssp             EEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBS--SSSEEEEEECCT
T ss_pred             EEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCC--CCCeEEEecCCC
Confidence            889999887643 333 211     111125556777655431  224577888776

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.21  E-value=5.7e-05  Score=77.77  Aligned_cols=130  Identities=8%  Similarity=-0.115  Sum_probs=78.9

Q ss_pred             eCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC--CceEE
Q 006979          198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAEL  275 (623)
Q Consensus       198 ~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~--~~~~L  275 (623)
                      ..|||++++...+.+..    ..+.++++|.++++.  +..+..+...  ...+||||++||...+-.+...+  ....|
T Consensus        40 ~~pd~~~vyV~~~~~~~----~~~~V~ViD~~t~~v--~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~V  111 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFA----AVTQQFVIDGEAGRV--IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV  111 (386)
T ss_dssp             CCCCTTEEEEEECGGGC----SSEEEEEEETTTTEE--EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             cCCCCCEEEEEcCcccC----CCCEEEEEECCCCeE--EEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEE
Confidence            46999988776653211    127899999998873  3344434332  37899999999876531110000  12458


Q ss_pred             EEEEecCCCceeeeEEEcCC-CCC-ccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE
Q 006979          276 WVGYISENGDVYKRVCVAGF-DPT-IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       276 ~v~d~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~  338 (623)
                      .++|..+...+  ..+..+. ... -........++|||+.+|+++. .....+..+|..+++..
T Consensus       112 sviD~~t~~v~--~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~-~~~~~VsVID~~t~~vv  173 (386)
T 3sjl_D          112 EVFDPVTLLPT--ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKAFK  173 (386)
T ss_dssp             EEECTTTCCEE--EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTEEE
T ss_pred             EEEECCCCeEE--EEEECCCccccccCCCCceEEEcCCCCEEEEEEc-CCCCeEEEEECCCCcEE
Confidence            89998876432  2222221 100 0024567899999996667765 33457889999998754

>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP}

Probab=98.21  E-value=3.5e-06  Score=85.39  Aligned_cols=101  Identities=12%  Similarity=0.057  Sum_probs=66.6

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|.||++||.........|...+..| ..||.|+.+|+||.|.....     ...+ ....+|+.+.++.+..     .+
T Consensus        81 ~~~lv~lhG~~~~~~~~~~~~~~~~L-~~~~~v~~~d~~G~G~~~~~-----~~~~-~~~~~~~~~~l~~~~~-----~~  148 (319)
T 3lcr_A           81 GPQLILVCPTVMTTGPQVYSRLAEEL-DAGRRVSALVPPGFHGGQAL-----PATL-TVLVRSLADVVQAEVA-----DG  148 (319)
T ss_dssp             SCEEEEECCSSTTCSGGGGHHHHHHH-CTTSEEEEEECTTSSTTCCE-----ESSH-HHHHHHHHHHHHHHHT-----TS
T ss_pred             CCeEEEECCCCcCCCHHHHHHHHHHh-CCCceEEEeeCCCCCCCCCC-----CCCH-HHHHHHHHHHHHHhcC-----CC
Confidence            47889999942233344666777777 78999999999996532111     1100 1113344444444331     26


Q ss_pred             ceEEEEcChHHHHHHHHh-cC---CCceeEEEecccC
Q 006979          575 RLCITGGSAGGYTTLAAL-AF---RDTFKAGASLYGV  607 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~---~~~f~a~v~~~g~  607 (623)
                      ++.++|||+||.+++.++ .+   ++.++++|...+.
T Consensus       149 ~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~  185 (319)
T 3lcr_A          149 EFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSY  185 (319)
T ss_dssp             CEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCC
T ss_pred             CEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCC
Confidence            899999999999999888 55   7888888877654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.20  E-value=0.00078  Score=66.20  Aligned_cols=276  Identities=12%  Similarity=0.069  Sum_probs=140.9

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC-CCCCccceeeeecCCceEEEeCC-EEEEEeCCCCc
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR  166 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~-p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~  166 (623)
                      ..+..+.+++++.+|.....   .+  .|++++.. + +..... +...        ......+.+++ .+++....++.
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~---~~--~v~~~d~~-~-~~~~~~~~~~~--------~~~~~i~~~~~g~l~v~~~~~~~   79 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHK---AN--MISCINLD-G-KITEYPLPTPD--------AKVMCLTISSDGEVWFTENAANK   79 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETT---TT--EEEEECTT-C-CEEEEECSSTT--------CCEEEEEECTTSCEEEEETTTTE
T ss_pred             CCccceEECCCCCEEEEecC---CC--cEEEEcCC-C-CeEEecCCccc--------CceeeEEECCCCCEEEeCCCCCe
Confidence            34567777775666665421   12  35666554 2 332221 2110        01223444444 67777666778


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc--cCCC
Q 006979          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSD  244 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~--~~~~  244 (623)
                      |++++.+ +  ..+.+...  ..........++|+|+.++ .....        ..|+++|. +++   ...+.  ....
T Consensus        80 i~~~~~~-g--~~~~~~~~--~~~~~~~~i~~~~~g~l~v-~~~~~--------~~i~~~d~-~g~---~~~~~~~~~~~  141 (299)
T 2z2n_A           80 IGRITKK-G--IIKEYTLP--NPDSAPYGITEGPNGDIWF-TEMNG--------NRIGRITD-DGK---IREYELPNKGS  141 (299)
T ss_dssp             EEEECTT-S--CEEEEECS--STTCCEEEEEECTTSCEEE-EETTT--------TEEEEECT-TCC---EEEEECSSTTC
T ss_pred             EEEECCC-C--cEEEEeCC--CcCCCceeeEECCCCCEEE-EecCC--------ceEEEECC-CCC---EEEecCCCCCC
Confidence            9999986 3  33333311  0123345677899996433 32211        56999998 554   33332  2223


Q ss_pred             cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE-EcCCCCCccccCcCceeCCCCcEEEEEeCCCC
Q 006979          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFDPTIVESPTEPKWSSKGELFFVTDRKNG  323 (623)
Q Consensus       245 ~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g  323 (623)
                      ......++|||+ |++....       ...|++++. ++ .  .... .....    ..+....++++|++++. +.  +
T Consensus       142 ~~~~i~~~~~g~-l~v~~~~-------~~~i~~~~~-~g-~--~~~~~~~~~~----~~~~~i~~~~~g~l~v~-~~--~  202 (299)
T 2z2n_A          142 YPSFITLGSDNA-LWFTENQ-------NNAIGRITE-SG-D--ITEFKIPTPA----SGPVGITKGNDDALWFV-EI--I  202 (299)
T ss_dssp             CEEEEEECTTSC-EEEEETT-------TTEEEEECT-TC-C--EEEEECSSTT----CCEEEEEECTTSSEEEE-ET--T
T ss_pred             CCceEEEcCCCC-EEEEeCC-------CCEEEEEcC-CC-c--EEEeeCCCCC----CcceeEEECCCCCEEEE-cc--C
Confidence            345567999996 6554421       345888887 33 1  2222 22111    33456788899886554 43  2


Q ss_pred             eeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccC--Cc
Q 006979          324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--FT  401 (623)
Q Consensus       324 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~--~~  401 (623)
                      ...|+++|+ +++.+.+... .....      ...+.+.   +++ .+++..  .+...|+++|.+ ++.+.+..+  ..
T Consensus       203 ~~~i~~~~~-~g~~~~~~~~-~~~~~------~~~i~~~---~~g-~l~v~~--~~~~~i~~~d~~-g~~~~~~~~~~~~  267 (299)
T 2z2n_A          203 GNKIGRITT-SGEITEFKIP-TPNAR------PHAITAG---AGI-DLWFTE--WGANKIGRLTSN-NIIEEYPIQIKSA  267 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECS-STTCC------EEEEEEC---STT-CEEEEE--TTTTEEEEEETT-TEEEEEECSSSSC
T ss_pred             CceEEEECC-CCcEEEEECC-CCCCC------ceeEEEC---CCC-CEEEec--cCCceEEEECCC-CceEEEeCCCCCC
Confidence            346888998 6665544211 01111      1122332   243 466654  234568888884 555554322  22


Q ss_pred             ceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          402 DIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       402 ~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ....+...++.+++...    ...|+++++++++
T Consensus       268 ~~~~i~~~~g~l~v~~~----~~~l~~~~~~~~~  297 (299)
T 2z2n_A          268 EPHGICFDGETIWFAME----CDKIGKLTLIKDN  297 (299)
T ss_dssp             CEEEEEECSSCEEEEET----TTEEEEEEEC---
T ss_pred             ccceEEecCCCEEEEec----CCcEEEEEcCccc
Confidence            23344225566666542    2567888776554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.19  E-value=0.00029  Score=69.52  Aligned_cols=233  Identities=7%  Similarity=-0.049  Sum_probs=120.4

Q ss_pred             eCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979          153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (623)
Q Consensus       153 s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~  232 (623)
                      +++.+++....++.|+++|.++| ....++...  . .....+..++|+|+.++  ..+         ..++.+|. +|+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG-~~~w~~~~~--~-~~~~~~~~~~pdG~ilv--s~~---------~~V~~~d~-~G~   66 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTK-EIVWEYPLE--K-GWECNSVAATKAGEILF--SYS---------KGAKMITR-DGR   66 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTT-EEEEEEECC--T-TCCCCEEEECTTSCEEE--ECB---------SEEEEECT-TSC
T ss_pred             CCCcEEEeeCCCCEEEEEECCCC-eEEEEeCCC--c-cCCCcCeEECCCCCEEE--eCC---------CCEEEECC-CCC
Confidence            35678888777888999998777 233334332  0 12345677999998665  221         46899999 454


Q ss_pred             cccceecccCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC
Q 006979          233 IQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (623)
Q Consensus       233 ~~~~~~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D  311 (623)
                      .  +..+..+. .......++|||+.|+-.. ..      ..+|+.++.++. .+... .+.................+|
T Consensus        67 ~--~W~~~~~~~~~~~~~~~~~dG~~lv~~~-~~------~~~v~~vd~~Gk-~l~~~-~~~~~~~~~~~~~~~v~~~~~  135 (276)
T 3no2_A           67 E--LWNIAAPAGCEMQTARILPDGNALVAWC-GH------PSTILEVNMKGE-VLSKT-EFETGIERPHAQFRQINKNKK  135 (276)
T ss_dssp             E--EEEEECCTTCEEEEEEECTTSCEEEEEE-ST------TEEEEEECTTSC-EEEEE-EECCSCSSGGGSCSCCEECTT
T ss_pred             E--EEEEcCCCCccccccEECCCCCEEEEec-CC------CCEEEEEeCCCC-EEEEE-eccCCCCcccccccCceECCC
Confidence            2  33443322 2334567899999765433 21      345777765432 11111 111110010012335567899


Q ss_pred             CcEEEEEeCCCCeeeEEEEecCCCeE-EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC
Q 006979          312 GELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (623)
Q Consensus       312 G~l~~~~~~~~g~~~L~~~d~~~~~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~  390 (623)
                      |++++...   +...|+.+|++ |+. ..+....    .+      .....+   ++++ +++....+  .+|+.+|+++
T Consensus       136 G~~lv~~~---~~~~v~~~d~~-G~~~w~~~~~~----~~------~~~~~~---~~g~-~~v~~~~~--~~v~~~d~~t  195 (276)
T 3no2_A          136 GNYLVPLF---ATSEVREIAPN-GQLLNSVKLSG----TP------FSSAFL---DNGD-CLVACGDA--HCFVQLNLES  195 (276)
T ss_dssp             SCEEEEET---TTTEEEEECTT-SCEEEEEECSS----CC------CEEEEC---TTSC-EEEECBTT--SEEEEECTTT
T ss_pred             CCEEEEec---CCCEEEEECCC-CCEEEEEECCC----Cc------cceeEc---CCCC-EEEEeCCC--CeEEEEeCcC
Confidence            98655433   23468899988 543 3332221    11      112222   1444 44444322  3699999995


Q ss_pred             Cce-eecccCC------cceEee-eecCCEEEEEEe-cCC------CCCeEEEEEcC
Q 006979          391 HSL-SLLDIPF------TDIDNI-TLGNDCLFVEGA-SGV------EPSSVAKVTLD  432 (623)
Q Consensus       391 ~~~-~~lt~~~------~~v~~~-~~~~~~~~~~~~-s~~------~~~~ly~~~l~  432 (623)
                      |++ .++....      ....++ ...++.+++... ...      ...+++.++.+
T Consensus       196 G~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~  252 (276)
T 3no2_A          196 NRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSE  252 (276)
T ss_dssp             CCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTT
T ss_pred             CcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCC
Confidence            554 3443211      112333 223444555443 221      34578887753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.19  E-value=3.6e-05  Score=81.29  Aligned_cols=155  Identities=8%  Similarity=0.005  Sum_probs=95.5

Q ss_pred             CceEEEeC--CEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCC-CCCEEEEEEeccCCCCCCceeEE
Q 006979          147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       147 ~~~~~~s~--d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      +.+.++++  +.++.+...++.|.++|+.++ .....+...  .....+....|+| ++++|+....|         ..|
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-~~~~~~~~~--gH~~~V~~l~f~p~~~~~l~s~s~D---------~~v  189 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-DKPTFIKGI--GAGGSITGLKFNPLNTNQFYASSME---------GTT  189 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCC-SCCEEECCC--SSSCCCCEEEECSSCTTEEEEECSS---------SCE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-CceeEEEcc--CCCCCEEEEEEeCCCCCEEEEEeCC---------CEE
Confidence            55667764  356777778899999999876 223333321  1134567889998 67776654443         447


Q ss_pred             EEEEcCCCCcccceecccCC---CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          224 VAIALNGQNIQEPKVLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~---~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      .++|+.++.   .+.+....   .......|+|||+.|+....+        ..|+++|+++.    ....+.+..    
T Consensus       190 ~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d--------g~i~~wd~~~~----~~~~~~~h~----  250 (435)
T 4e54_B          190 RLQDFKGNI---LRVFASSDTINIWFCSLDVSASSRMVVTGDNV--------GNVILLNMDGK----ELWNLRMHK----  250 (435)
T ss_dssp             EEEETTSCE---EEEEECCSSCSCCCCCEEEETTTTEEEEECSS--------SBEEEEESSSC----BCCCSBCCS----
T ss_pred             EEeeccCCc---eeEEeccCCCCccEEEEEECCCCCEEEEEeCC--------CcEeeeccCcc----eeEEEeccc----
Confidence            788998765   44443322   234457899999988765422        23888888654    222233333    


Q ss_pred             ccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCC
Q 006979          301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       301 ~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~  335 (623)
                      ..+....|+|+++ +++.... ++.-+||  |+.+.
T Consensus       251 ~~v~~v~~~p~~~~~~~s~s~-d~~v~iw--d~~~~  283 (435)
T 4e54_B          251 KKVTHVALNPCCDWFLATASV-DQTVKIW--DLRQV  283 (435)
T ss_dssp             SCEEEEEECTTCSSEEEEEET-TSBCCEE--ETTTC
T ss_pred             ceEEeeeecCCCceEEEEecC-cceeeEE--ecccc
Confidence            4567889999998 6665554 4554554  55443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.19  E-value=0.00018  Score=74.18  Aligned_cols=210  Identities=11%  Similarity=0.088  Sum_probs=115.0

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCc----cceeeeecCCceEEEeC-C-EEEEEe
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYA----VRTTAQEYGGGAFRIFG-D-TVIFSN  161 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~----~r~~~~~~g~~~~~~s~-d-~l~f~~  161 (623)
                      ..+..+.|+| ++.++..-..   +|...+|.....  ............    .....|...+.+..+++ + .++++.
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~---dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  118 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGS---DGVIVLYDLENS--SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS  118 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEET---TSCEEEEECCCC--SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred             CcEEEEEEecCCCCEEEEEcC---CCeEEEEECCCC--cccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence            4556788888 6666665543   477777766533  111111100000    00001233344566665 3 456666


Q ss_pred             CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCC---CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccee
Q 006979          162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP---RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV  238 (623)
Q Consensus       162 ~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sP---dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~  238 (623)
                      ..++.|.++|+.++ .....+..     ........++|   +++.++....+         ..|.++|+.+++.  ...
T Consensus       119 ~~d~~i~iwd~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~d~~~~~~--~~~  181 (408)
T 4a11_B          119 SFDKTLKVWDTNTL-QTADVFNF-----EETVYSHHMSPVSTKHCLVAVGTRG---------PKVQLCDLKSGSC--SHI  181 (408)
T ss_dssp             ETTSEEEEEETTTT-EEEEEEEC-----SSCEEEEEECSSCSSCCEEEEEESS---------SSEEEEESSSSCC--CEE
T ss_pred             eCCCeEEEeeCCCC-ccceeccC-----CCceeeeEeecCCCCCcEEEEEcCC---------CeEEEEeCCCcce--eee
Confidence            67888999999876 22222322     12234455666   55566665443         4588899987752  344


Q ss_pred             cccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE---------------cCCCCCccccC
Q 006979          239 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV---------------AGFDPTIVESP  303 (623)
Q Consensus       239 l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~---------------~~~~~~~~~~~  303 (623)
                      +......+....|+|||+++++....+       ..|.++|+..+..  ....+               ....    ..+
T Consensus       182 ~~~~~~~v~~~~~~~~~~~ll~~~~~d-------g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~v  248 (408)
T 4a11_B          182 LQGHRQEILAVSWSPRYDYILATASAD-------SRVKLWDVRRASG--CLITLDQHNGKKSQAVESANTAHN----GKV  248 (408)
T ss_dssp             ECCCCSCEEEEEECSSCTTEEEEEETT-------SCEEEEETTCSSC--CSEECCTTTTCSCCCTTTSSCSCS----SCE
T ss_pred             ecCCCCcEEEEEECCCCCcEEEEEcCC-------CcEEEEECCCCCc--ccccccccccccceeecccccccc----Cce
Confidence            444445566788999999755554332       2388888876531  11111               1111    345


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                      ....|+|||++++.... ++.  |..+|+.+++
T Consensus       249 ~~~~~~~~~~~l~~~~~-dg~--i~vwd~~~~~  278 (408)
T 4a11_B          249 NGLCFTSDGLHLLTVGT-DNR--MRLWNSSNGE  278 (408)
T ss_dssp             EEEEECTTSSEEEEEET-TSC--EEEEETTTCC
T ss_pred             eEEEEcCCCCEEEEecC-CCe--EEEEECCCCc
Confidence            67899999985544443 344  4555655543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.18  E-value=0.00015  Score=73.44  Aligned_cols=148  Identities=9%  Similarity=-0.026  Sum_probs=79.2

Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc---
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS---  241 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~---  241 (623)
                      +.|+++|.+++  ........  .......+.+++|+|+ |++ ....       ...|+++|+++.. ..+..+..   
T Consensus        69 ~~i~~~d~~~g--~~~~~~~~--~~~~~p~gia~d~~g~-l~v-~d~~-------~~~v~~~~~~g~~-~~~~~~~~~~~  134 (329)
T 3fvz_A           69 DTILVIDPNNA--EILQSSGK--NLFYLPHGLSIDTDGN-YWV-TDVA-------LHQVFKLDPHSKE-GPLLILGRSMQ  134 (329)
T ss_dssp             CCEEEECTTTC--CEEEEECT--TTCSSEEEEEECTTSC-EEE-EETT-------TTEEEEECTTCSS-CCSEEESBTTB
T ss_pred             CcEEEEECCCC--eEEeccCC--CccCCceEEEECCCCC-EEE-EECC-------CCEEEEEeCCCCe-EEEEEecccCC
Confidence            36999998766  33222111  1112345678999998 444 3321       1579999987652 00333321   


Q ss_pred             ----CCC--cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCC------CCccccCcCceeC
Q 006979          242 ----GSD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD------PTIVESPTEPKWS  309 (623)
Q Consensus       242 ----~~~--~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ws  309 (623)
                          ...  .....+++|++..|++....      ....|++++.++.    ....+....      +.....+..++++
T Consensus       135 ~g~~~~~~~~P~~ia~~~~~g~lyv~d~~------~~~~I~~~~~~g~----~~~~~~~~g~~~~~~~~~~~~p~gia~d  204 (329)
T 3fvz_A          135 PGSDQNHFCQPTDVAVEPSTGAVFVSDGY------CNSRIVQFSPSGK----FVTQWGEESSGSSPRPGQFSVPHSLALV  204 (329)
T ss_dssp             CCCSTTCCSSEEEEEECTTTCCEEEEECS------SCCEEEEECTTSC----EEEEECEECCSSSCCTTEESCEEEEEEE
T ss_pred             CCCCccccCCCcEEEEeCCCCeEEEEeCC------CCCeEEEEcCCCC----EEEEeccCCCCCCCCCcccCCCcEEEEE
Confidence                111  23345799944447666521      1345888884432    222221110      0111235677899


Q ss_pred             CCCcEEEEEeCCCCeeeEEEEecCCCeEE
Q 006979          310 SKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       310 ~DG~l~~~~~~~~g~~~L~~~d~~~~~~~  338 (623)
                      ||+..+|+++.  +..+|.++|+++++..
T Consensus       205 ~~~g~l~v~d~--~~~~I~~~~~~~G~~~  231 (329)
T 3fvz_A          205 PHLDQLCVADR--ENGRIQCFKTDTKEFV  231 (329)
T ss_dssp             TTTTEEEEEET--TTTEEEEEETTTCCEE
T ss_pred             CCCCEEEEEEC--CCCEEEEEECCCCcEE
Confidence            99445556665  4457888998866543

>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua}

Probab=98.18  E-value=2.6e-06  Score=83.27  Aligned_cols=110  Identities=9%  Similarity=-0.109  Sum_probs=69.5

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceE---E----------EEECCCCCCCCchhHHHhh--ccCCc-cchHHHHHH
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWA---F----------VDVNYGGSTGYGREFRERL--LGRWG-IVDVNDCCS  560 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~---v----------~~~d~rGs~~~g~~~~~~~--~~~~g-~~~~~D~~~  560 (623)
                      .||++||..  .....|...++.|+++|+.   +          +.+|-++.+..+.......  ..... ....+|+.+
T Consensus         5 pvvllHG~~--~~~~~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~   82 (254)
T 3ds8_A            5 PIILIHGSG--GNASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLKI   82 (254)
T ss_dssp             CEEEECCTT--CCTTTTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHHHHHHHH
T ss_pred             CEEEECCCC--CCcchHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHHHHHHHH
Confidence            367899984  4445688889999988764   2          3333221111111000000  00011 123567777


Q ss_pred             HHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCC-----ceeEEEecccCCCH
Q 006979          561 CATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRD-----TFKAGASLYGVSIP  610 (623)
Q Consensus       561 ~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~-----~f~a~v~~~g~~d~  610 (623)
                      +++++.++..+  +++.++||||||.+++.++ .+|+     .+++.|.+++..+.
T Consensus        83 ~i~~l~~~~~~--~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g  136 (254)
T 3ds8_A           83 AMEDLKSRYGF--TQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFND  136 (254)
T ss_dssp             HHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTC
T ss_pred             HHHHHHHHhCC--CceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCc
Confidence            77888775323  6999999999999999988 7887     89999999987654

>1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A

Probab=98.17  E-value=2.9e-06  Score=85.04  Aligned_cols=104  Identities=9%  Similarity=-0.024  Sum_probs=70.5

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHH-HHHhCCC
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGK  570 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~~~~~  570 (623)
                      +...|.||++||.+.......|......+. .+|.|+.+|+||.|....          ....++++.+.+. .+.+.  
T Consensus        64 ~~~~~~lvllhG~~~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~----------~~~~~~~~a~~~~~~l~~~--  130 (300)
T 1kez_A           64 GPGEVTVICCAGTAAISGPHEFTRLAGALR-GIAPVRAVPQPGYEEGEP----------LPSSMAAVAAVQADAVIRT--  130 (300)
T ss_dssp             CSCSSEEEECCCSSTTCSTTTTHHHHHHTS-SSCCBCCCCCTTSSTTCC----------BCSSHHHHHHHHHHHHHHH--
T ss_pred             CCCCCeEEEECCCcccCcHHHHHHHHHhcC-CCceEEEecCCCCCCCCC----------CCCCHHHHHHHHHHHHHHh--
Confidence            344578999999854332245666666665 469999999999654221          1123444444433 44443  


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCC---CceeEEEecccCC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFR---DTFKAGASLYGVS  608 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~---~~f~a~v~~~g~~  608 (623)
                      .+.+++.++|||+||.+++.++ .+|   +.++++|...+..
T Consensus       131 ~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~  172 (300)
T 1kez_A          131 QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYP  172 (300)
T ss_dssp             CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCC
T ss_pred             cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCC
Confidence            2346899999999999999988 766   5899999887764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.17  E-value=0.00029  Score=70.55  Aligned_cols=205  Identities=10%  Similarity=-0.030  Sum_probs=111.5

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCcee---cCCCCCCCCeeecceeeCC--CCCEEEEEEeccCCCCCCce
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLP---ITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNST  220 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~---Lt~~~~~~~~~~~d~~~sP--dG~~l~~v~~~~~~~~~~~~  220 (623)
                      +.+..++++ ..+++...++.|.++++.++....+.   +...    ........|+|  |++.|+....+         
T Consensus        14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~d~~~l~s~~~d---------   80 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH----DSSIVAIDWASPEYGRIIASASYD---------   80 (351)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC----SSCEEEEEECCGGGCSEEEEEETT---------
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC----CCcEEEEEEcCCCCCCEEEEEcCC---------
Confidence            445566555 45566667888999998754111122   2221    23466788999  68888776654         


Q ss_pred             eEEEEEEcCCCCc-------ccceecccCCCcccceeeCCC--CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE
Q 006979          221 TEIVAIALNGQNI-------QEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC  291 (623)
Q Consensus       221 ~~L~~idl~~g~~-------~~~~~l~~~~~~~~~p~wSPD--G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~  291 (623)
                      ..|.++|+.++..       .....+...........|+||  |+.|+....+        ..|.++|+..+..+.....
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------g~v~iwd~~~~~~~~~~~~  152 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND--------GILRLYDALEPSDLRSWTL  152 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT--------CEEEEEECSSTTCTTCCEE
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC--------CcEEEecCCChHHhccccc
Confidence            4477778876531       002223333445566789999  9988876533        3488889876643111110


Q ss_pred             ---E--cC-CCCCccccCcCceeCCC---CcEEEEEeCCCCeeeEEEEecCCCeEEEEee---cccccccccccccCcce
Q 006979          292 ---V--AG-FDPTIVESPTEPKWSSK---GELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSY  359 (623)
Q Consensus       292 ---~--~~-~~~~~~~~~~~~~ws~D---G~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~---~~~~~~~~~w~~~~~~~  359 (623)
                         .  .. ....-...+....|+|+   ++++++... ++.  +...+...++...+..   ....+....|.+     
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-----  224 (351)
T 3f3f_A          153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL-EQA--IIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-----  224 (351)
T ss_dssp             EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET-TEE--EEEEECTTSCEEEEEECCCCCSCEEEEEECC-----
T ss_pred             cccccccccccCCcccceeEEEeccCCCCCcEEEEecC-CCc--EEEEccCCCceeeeeecCCCCcceeEEEECC-----
Confidence               0  00 00001135567889997   665555554 333  2333344554433332   122222233332     


Q ss_pred             eEEeecCCCC---EEEEEEEECCeEEEEEEe
Q 006979          360 EIIQSHGEKN---LIACSYRQNGRSYLGILD  387 (623)
Q Consensus       360 ~~l~~s~~~~---~l~~~~~~~g~~~L~~~d  387 (623)
                             ++.   .++++...+|.-++|-+.
T Consensus       225 -------~~~~~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          225 -------SIGRWYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             -------CSSCSSEEEEEEETTSCEEEEEEE
T ss_pred             -------CCCCcceEEEEEcCCCeEEEEeCC
Confidence                   442   567777777877777665

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.17  E-value=0.0016  Score=65.19  Aligned_cols=238  Identities=9%  Similarity=0.001  Sum_probs=128.4

Q ss_pred             CceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCC----ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCce
Q 006979          147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST  220 (623)
Q Consensus       147 ~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~----~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~  220 (623)
                      +.+.+++++  .++++...|+.|.++|+..+...    .+.+...    ........|+|||++|+....+         
T Consensus        41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h----~~~V~~~~~s~dg~~l~s~~~d---------  107 (340)
T 4aow_A           41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH----SHFVSDVVISSDGQFALSGSWD---------  107 (340)
T ss_dssp             EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC----CCCEEEEEECCCCCEEEEEccc---------
Confidence            455666654  57778778888999988754111    1122221    2345678899999988776554         


Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE-cCCCCCc
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGFDPTI  299 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~-~~~~~~~  299 (623)
                      ..+...+...+..  ...............++|+++.|+....+.        .+.+.|+....   ..... .+..   
T Consensus       108 ~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--------~~~~~d~~~~~---~~~~~~~~~~---  171 (340)
T 4aow_A          108 GTLRLWDLTTGTT--TRRFVGHTKDVLSVAFSSDNRQIVSGSRDK--------TIKLWNTLGVC---KYTVQDESHS---  171 (340)
T ss_dssp             SEEEEEETTTTEE--EEEEECCSSCEEEEEECTTSSCEEEEETTS--------CEEEECTTSCE---EEEECSSSCS---
T ss_pred             ccceEEeecccce--eeeecCCCCceeEEEEeecCccceeecCCC--------eEEEEEeCCCc---eEEEEecccc---
Confidence            4577788776641  122222333444567999999887665433        26666765541   12221 2222   


Q ss_pred             cccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEE
Q 006979          300 VESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ  377 (623)
Q Consensus       300 ~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~  377 (623)
                       ..+....|++++. .++++...++  .|..+|..+++...... ....+..         +.+.   |+++. +++...
T Consensus       172 -~~v~~~~~~~~~~~~~~~s~~~d~--~i~i~d~~~~~~~~~~~~h~~~v~~---------~~~s---~~~~~-l~s~s~  235 (340)
T 4aow_A          172 -EWVSCVRFSPNSSNPIIVSCGWDK--LVKVWNLANCKLKTNHIGHTGYLNT---------VTVS---PDGSL-CASGGK  235 (340)
T ss_dssp             -SCEEEEEECSCSSSCEEEEEETTS--CEEEEETTTTEEEEEECCCSSCEEE---------EEEC---TTSSE-EEEEET
T ss_pred             -CcccceEEccCCCCcEEEEEcCCC--EEEEEECCCCceeeEecCCCCcEEE---------EEEC---CCCCE-EEEEeC
Confidence             3455678888876 4433332133  45666777776443332 2222222         2232   26654 445555


Q ss_pred             CCeEEEEEEeCCCCceeecccCCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          378 NGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       378 ~g~~~L~~~d~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ++.-+|  +|+.+++....-.....+..+ ...++.++..+.+    ..|...+++++.
T Consensus       236 Dg~i~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d----~~i~iwd~~~~~  288 (340)
T 4aow_A          236 DGQAML--WDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG----PSIKIWDLEGKI  288 (340)
T ss_dssp             TCEEEE--EETTTTEEEEEEECSSCEEEEEECSSSSEEEEEET----TEEEEEETTTTE
T ss_pred             CCeEEE--EEeccCceeeeecCCceEEeeecCCCCceeeccCC----CEEEEEECCCCe
Confidence            665444  576665443222222334444 2233444443332    467788887664

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.16  E-value=0.00039  Score=71.41  Aligned_cols=130  Identities=5%  Similarity=-0.048  Sum_probs=72.8

Q ss_pred             CCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC--CceEEEE
Q 006979          200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELWV  277 (623)
Q Consensus       200 PdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~--~~~~L~v  277 (623)
                      |++++++.+......   -..+.++++|.++++.  ...+..+. .. ...+||||++||..........+  ....|.+
T Consensus        13 ~~~~~~yv~~~~~~~---~~d~~v~v~D~~t~~~--~~~i~~g~-~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v   85 (361)
T 2oiz_A           13 PQENRIYVMDSVFMH---LTESRVHVYDYTNGKF--LGMVPTAF-NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEV   85 (361)
T ss_dssp             CGGGEEEEEECCGGG---GGGCEEEEEETTTCCE--EEEEECCE-EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEE
T ss_pred             CCCCEEEEECCCCCc---cccCeEEEEECCCCeE--EEEecCCC-CC-ceEECCCCCEEEEEEecccccccCCCCCEEEE
Confidence            477776655432211   0125899999988873  23333332 22 67899999998876531100000  1345888


Q ss_pred             EEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE
Q 006979          278 GYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       278 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~  338 (623)
                      +|+.+...+.... +......-...+..+.++|||+.+|+++. .....|..+|+++++..
T Consensus        86 ~d~~t~~~~~~i~-~~~~~~~~g~~p~~i~~spdg~~l~v~n~-~~~~~v~v~d~~~~~~~  144 (361)
T 2oiz_A           86 WDADKLTFEKEIS-LPPKRVQGLNYDGLFRQTTDGKFIVLQNA-SPATSIGIVDVAKGDYV  144 (361)
T ss_dssp             EETTTCCEEEEEE-ECTTBCCBCCCGGGEEECTTSSEEEEEEE-SSSEEEEEEETTTTEEE
T ss_pred             EECcCCcEEEEEE-cCccccccCCCcceEEECCCCCEEEEECC-CCCCeEEEEECCCCcEE
Confidence            8987653221111 11110000024567899999997777765 22456888898887643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.16  E-value=4.7e-05  Score=73.50  Aligned_cols=200  Identities=8%  Similarity=-0.096  Sum_probs=113.2

Q ss_pred             EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      +.++++.+|++...+++|.++|++++ ...+.+.+.    .. +. -...++|++|+...+..        +.++++|++
T Consensus        60 L~~~~~~Ly~stG~~g~v~~iD~~Tg-kv~~~~l~~----~~-Fg-eGit~~g~~Ly~ltw~~--------~~v~V~D~~  124 (268)
T 3nok_A           60 LVFHQGHFFESTGHQGTLRQLSLESA-QPVWMERLG----NI-FA-EGLASDGERLYQLTWTE--------GLLFTWSGM  124 (268)
T ss_dssp             EEEETTEEEEEETTTTEEEECCSSCS-SCSEEEECT----TC-CE-EEEEECSSCEEEEESSS--------CEEEEEETT
T ss_pred             EEEECCEEEEEcCCCCEEEEEECCCC-cEEeEECCC----Cc-ce-eEEEEeCCEEEEEEccC--------CEEEEEECC
Confidence            34557789999888888999999988 334444211    11 11 12456777887765533        789999999


Q ss_pred             CCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC
Q 006979          230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS  309 (623)
Q Consensus       230 ~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws  309 (623)
                      +.+.  +..+.-+.+   +-..++||++|+. + +.      ..+|+++|.++...+  ..+..+..+.-...+....|.
T Consensus       125 Tl~~--~~ti~~~~e---GwGLt~Dg~~L~v-S-dG------s~~l~~iDp~T~~v~--~~I~V~~~g~~v~~lNeLe~~  189 (268)
T 3nok_A          125 PPQR--ERTTRYSGE---GWGLCYWNGKLVR-S-DG------GTMLTFHEPDGFALV--GAVQVKLRGQPVELINELECA  189 (268)
T ss_dssp             TTEE--EEEEECSSC---CCCEEEETTEEEE-E-CS------SSEEEEECTTTCCEE--EEEECEETTEECCCEEEEEEE
T ss_pred             cCcE--EEEEeCCCc---eeEEecCCCEEEE-E-CC------CCEEEEEcCCCCeEE--EEEEeCCCCcccccccccEEe
Confidence            8763  334433222   2346689997754 4 33      346999998776432  222221111101233456786


Q ss_pred             CCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc-c--ccc--cccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-A--EFS--RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       310 ~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-~--~~~--~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                       ||++| +...  ....|.++|+++++........ .  ...  ...-..-.+.+++.   |+++.||++-  .-+..||
T Consensus       190 -dG~ly-anvw--~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~d---p~~~rlfVTG--K~Wp~~~  260 (268)
T 3nok_A          190 -NGVIY-ANIW--HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVE---PGSGRIFMTG--KLWPRLF  260 (268)
T ss_dssp             -TTEEE-EEET--TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEEC---TTTCCEEEEE--TTCSEEE
T ss_pred             -CCEEE-EEEC--CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEc---CCCCEEEEeC--CCCCceE
Confidence             78655 5554  2348999999999865544221 0  000  00000111334443   3677787765  4567777


Q ss_pred             EEeC
Q 006979          385 ILDD  388 (623)
Q Consensus       385 ~~d~  388 (623)
                      .+.+
T Consensus       261 ev~~  264 (268)
T 3nok_A          261 EVRL  264 (268)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7643

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.16  E-value=0.00036  Score=73.06  Aligned_cols=127  Identities=8%  Similarity=-0.174  Sum_probs=75.7

Q ss_pred             CCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC--CceEEEE
Q 006979          200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELWV  277 (623)
Q Consensus       200 PdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~--~~~~L~v  277 (623)
                      |++++++........    ..+.|.++|++++++  +..+.-+.. . +..+||||++||...........  ....|.+
T Consensus        82 ~~~~~vyV~n~~~~~----~~~~VsVID~~t~~v--v~~I~vG~~-P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsv  153 (426)
T 3c75_H           82 PDARRVYIQDPAHFA----AITQQFVIDGSTGRI--LGMTDGGFL-P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEV  153 (426)
T ss_dssp             CCTTEEEEEECTTTC----SSEEEEEEETTTTEE--EEEEEECSS-C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCC----CCCeEEEEECCCCEE--EEEEECCCC-C-ceEECCCCCEEEEEeccccccccCCCCCEEEE
Confidence            677776555442111    116899999999873  334443433 3 68899999999876531000000  1345899


Q ss_pred             EEecCCCceeeeEEEcC-CCCCc--cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE
Q 006979          278 GYISENGDVYKRVCVAG-FDPTI--VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       278 ~d~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~  338 (623)
                      +|..+...  ...+..+ .. .+  ......+.++|||+.+|+++. .....|..+|+.+++..
T Consensus       154 iD~~t~~v--v~~I~v~g~~-r~~~g~~P~~~~~spDGk~lyV~n~-~~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          154 FDPVTFLP--IADIELPDAP-RFLVGTYQWMNALTPDNKNLLFYQF-SPAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             ECTTTCCE--EEEEEETTCC-CCCBSCCGGGSEECTTSSEEEEEEC-SSSCEEEEEETTTTEEE
T ss_pred             EECCCCcE--EEEEECCCcc-ccccCCCcceEEEcCCCCEEEEEec-CCCCeEEEEECCCCeEE
Confidence            99887643  2222222 11 00  023568899999996667665 33456889999887743

>3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum}

Probab=98.15  E-value=5.7e-06  Score=80.37  Aligned_cols=109  Identities=11%  Similarity=0.037  Sum_probs=71.0

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCc---eEEEEECCCCCCC--CchhHH----Hh----hccC--Cc----cchHHH
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRG---WAFVDVNYGGSTG--YGREFR----ER----LLGR--WG----IVDVND  557 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G---~~v~~~d~rGs~~--~g~~~~----~~----~~~~--~g----~~~~~D  557 (623)
                      -||++||..  .....|...+..|+++|   +.|+.+|+++.|.  +...+.    +.    ...+  -+    ....++
T Consensus         6 pvv~iHG~~--~~~~~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a~~   83 (250)
T 3lp5_A            6 PVIMVPGSS--ASQNRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAVW   83 (250)
T ss_dssp             CEEEECCCG--GGHHHHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHHHH
T ss_pred             CEEEECCCC--CCHHHHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHHHH
Confidence            366699983  44456778899999887   5666555444321  111110    00    0000  01    123578


Q ss_pred             HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC-----CCceeEEEecccCCC
Q 006979          558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF-----RDTFKAGASLYGVSI  609 (623)
Q Consensus       558 ~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~-----~~~f~a~v~~~g~~d  609 (623)
                      +.+++++|.++-.  .+++.++||||||.+++..+ .+     ++.++..|.+.+..+
T Consensus        84 l~~~~~~l~~~~~--~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~  139 (250)
T 3lp5_A           84 LNTAFKALVKTYH--FNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYN  139 (250)
T ss_dssp             HHHHHHHHHTTSC--CSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTT
T ss_pred             HHHHHHHHHHHcC--CCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCC
Confidence            8889999987733  47999999999999999877 55     678999998887654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.14  E-value=0.0009  Score=70.00  Aligned_cols=239  Identities=8%  Similarity=-0.016  Sum_probs=133.6

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.+++++ ..+++...++.|.++|+.++ ...+.+...    ..+...  ++++++.++....+         ..+++
T Consensus       150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-~~~~~~~~h----~~~v~~--~s~~~~~l~sgs~d---------~~i~~  213 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSH----SARVGS--LSWNSYILSSGSRS---------GHIHH  213 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCC----SSCEEE--EEEETTEEEEEETT---------SEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEcCCC-cEEEEEeCC----CCceEE--EeeCCCEEEEEeCC---------CceeE
Confidence            456677766 56666777888999999876 223333322    223333  45567766654443         45777


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-eeeeEEEcCCCCCccccCc
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~  304 (623)
                      .|...... .+..+...........|+|+|++|+....|.        .+.+.+...+.. ...........    ..+.
T Consensus       214 ~d~~~~~~-~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~--------~v~i~~~~~~~~~~~~~~~~~~~~----~~V~  280 (420)
T 4gga_A          214 HDVRVAEH-HVATLSGHSQEVCGLRWAPDGRHLASGGNDN--------LVNVWPSAPGEGGWVPLQTFTQHQ----GAVK  280 (420)
T ss_dssp             EETTSSSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTS--------CEEEEESSCCSSCSCCSEEECCCS----SCEE
T ss_pred             eeecccce-eeEEecccccceeeeeecCCCCeeeeeeccc--------cceEEeeccccccceeeeeecccC----Ccee
Confidence            78766431 1233444444556678999999988766432        277778766532 11122233333    4566


Q ss_pred             CceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE-ECCeEE
Q 006979          305 EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSY  382 (623)
Q Consensus       305 ~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~-~~g~~~  382 (623)
                      ...|+|++. ++.+... .....|..+|..+++..........+....|.+            +++.++..+. .++  .
T Consensus       281 ~~~~~p~~~~~la~~~g-s~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~------------~~~~lv~~sg~~d~--~  345 (420)
T 4gga_A          281 AVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP------------HYKELISGHGFAQN--Q  345 (420)
T ss_dssp             EEEECTTCTTEEEEEEC-TTTCEEEEEETTTTEEEEEEECSSCEEEEEEET------------TTTEEEEEECTTTC--C
T ss_pred             eeeeCCCcccEEEEEee-cCCCEEEEEeCCccccceeeccccceeeeeecC------------CCCeEEEEEecCCC--E
Confidence            789999887 6655432 222456677888887554443333333333332            6777666542 234  4


Q ss_pred             EEEEeCCCCce-eecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCC
Q 006979          383 LGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDD  433 (623)
Q Consensus       383 L~~~d~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~  433 (623)
                      |+++|..+++. ..+......|..+  ++++..+ ++++..   ..|...++..
T Consensus       346 I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l-~S~s~D---~tvriWdv~~  395 (420)
T 4gga_A          346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV-ASAAAD---ETLRLWRCFE  395 (420)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE-EEEETT---TEEEEECCSC
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE-EEEecC---CeEEEEECCC
Confidence            66667766554 4555444556655  5666644 444432   2344455443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.13  E-value=0.00011  Score=76.13  Aligned_cols=242  Identities=11%  Similarity=0.021  Sum_probs=125.0

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+..++++ ..+++...|+.|.++|+.++ .....+...    ........|+|+|++|+....+         ..+.+
T Consensus        69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-~~~~~~~~h----~~~v~~~~~s~~g~~las~~~d---------~~v~i  134 (380)
T 3iz6_a           69 VYSLDWTPEKNWIVSASQDGRLIVWNALTS-QKTHAIKLH----CPWVMECAFAPNGQSVACGGLD---------SACSI  134 (380)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEEETTTT-EEEEEEECC----CTTCCCCEECTTSSEEEECCSS---------SCCEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ccceEEecC----CCCEEEEEECCCCCEEEEeeCC---------CcEEE
Confidence            345556655 56667778889999999876 222333322    2235667899999988775543         33555


Q ss_pred             EEcCCCC-----cccceecccCCCcccceeeCCCCCE-EEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCC-CCC
Q 006979          226 IALNGQN-----IQEPKVLVSGSDFYAFPRMDPRGER-MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-DPT  298 (623)
Q Consensus       226 idl~~g~-----~~~~~~l~~~~~~~~~p~wSPDG~~-la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~-~~~  298 (623)
                      +++.+..     ....+.+...........|+|++.. |+-.+.|        ..|.+.|+.++..   ...+... ...
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D--------~~i~~wd~~~~~~---~~~~~~~~~~~  203 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD--------QTCVLWDVTTGQR---ISIFGSEFPSG  203 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT--------SCEEEECTTTCCE---EEEECCCSSSS
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCC--------CcEEEEEcCCCcE---EEEeecccCCC
Confidence            6665421     0111233333445556789998654 5433322        2377888887632   2222110 000


Q ss_pred             ccccCcCceeCC-CCcEEEEEeCCCCeeeEEEEecCC-Ce-EEEEeecccccccccccccCcceeEEeecCCCCEEEEEE
Q 006979          299 IVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESN-NE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY  375 (623)
Q Consensus       299 ~~~~~~~~~ws~-DG~l~~~~~~~~g~~~L~~~d~~~-~~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~  375 (623)
                      ....+....|.+ ++.+++.... ++.-+|  +|+.. ++ .+.+......+....|.+            +++. +++.
T Consensus       204 h~~~v~~~~~~~~~~~~l~sgs~-D~~v~~--wd~~~~~~~~~~~~~h~~~v~~v~~~p------------~~~~-l~s~  267 (380)
T 3iz6_a          204 HTADVLSLSINSLNANMFISGSC-DTTVRL--WDLRITSRAVRTYHGHEGDINSVKFFP------------DGQR-FGTG  267 (380)
T ss_dssp             CCSCEEEEEECSSSCCEEEEEET-TSCEEE--EETTTTCCCCEEECCCSSCCCEEEECT------------TSSE-EEEE
T ss_pred             CccCeEEEEeecCCCCEEEEEEC-CCeEEE--EECCCCCcceEEECCcCCCeEEEEEec------------CCCe-EEEE
Confidence            003445667766 6665555544 455444  56542 22 333333323333333332            6554 4455


Q ss_pred             EECCeEEEEEEeCCCCceee-cccCC-------cceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          376 RQNGRSYLGILDDFGHSLSL-LDIPF-------TDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       376 ~~~g~~~L~~~d~~~~~~~~-lt~~~-------~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ..+|.-+|  +|+.+++... +....       ..+..+  ++++..++ .+..   ...++..|+..++
T Consensus       268 s~D~~i~l--wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~---dg~i~vwd~~~~~  331 (380)
T 3iz6_a          268 SDDGTCRL--FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF-AGYS---NGDCYVWDTLLAE  331 (380)
T ss_dssp             CSSSCEEE--EETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE-EECT---TSCEEEEETTTCC
T ss_pred             cCCCeEEE--EECCCCcEEEEecccccccccccCceEEEEECCCCCEEE-EEEC---CCCEEEEECCCCc
Confidence            56666555  4766665432 22111       113333  55665544 4432   2468888877665

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.12  E-value=5.8e-05  Score=81.10  Aligned_cols=197  Identities=9%  Similarity=-0.037  Sum_probs=110.4

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.++++| ..+.+...++.+.+++.++   ....++....-+...+...+|||||++|+...++         +.|.+
T Consensus        88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~D---------GtVkI  155 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNED---------GELQF  155 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETT---------SEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeeccCCCccccccEEEEEEcCCCCEEEEEcCC---------CEEEE
Confidence            445666666 3333444677788888542   2333331100001236689999999999887665         56888


Q ss_pred             EEcCCCCccc-----ceec----ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE-cCC
Q 006979          226 IALNGQNIQE-----PKVL----VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGF  295 (623)
Q Consensus       226 idl~~g~~~~-----~~~l----~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~-~~~  295 (623)
                      .|+.++...+     ...+    ......+...+|||||  |+-...|.        .+++++++++........+ .+.
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~--------tVrlWd~~~~~~~~~~~tL~~~h  225 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNN--------SVFSMTVSASSHQPVSRMIQNAS  225 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTC--------CEEEECCCSSSSCCCEEEEECCC
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCC--------eEEEEECCCCccccceeeecccc
Confidence            8888875211     1333    1122456678899999  55454333        2778888776421112233 233


Q ss_pred             CCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeec-ccccccccccccCcceeEEeecCCCCEEEEE
Q 006979          296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACS  374 (623)
Q Consensus       296 ~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~  374 (623)
                      .    ..+...+|+  |+.+..+..    ..|..+|..+++...+..+ ...+.         ++.+ +++++ +..+.+
T Consensus       226 ~----~~V~svaFs--g~~LASa~~----~tIkLWd~~~~~~~~~~~gh~~~V~---------~va~-~~s~d-~~~La~  284 (588)
T 2j04_A          226 R----RKITDLKIV--DYKVVLTCP----GYVHKIDLKNYSISSLKTGSLENFH---------IIPL-NHEKE-STILLM  284 (588)
T ss_dssp             S----SCCCCEEEE--TTEEEEECS----SEEEEEETTTTEEEEEECSCCSCCC---------EEEE-TTCSS-CEEEEE
T ss_pred             c----CcEEEEEEE--CCEEEEEeC----CeEEEEECCCCeEEEEEcCCCceEE---------EEEe-eeCCC-CCEEEE
Confidence            3    567899999  454434322    3677788888776544422 11121         2233 11224 455666


Q ss_pred             EEECCeEEEEEEe
Q 006979          375 YRQNGRSYLGILD  387 (623)
Q Consensus       375 ~~~~g~~~L~~~d  387 (623)
                      +.++|. +||.+|
T Consensus       285 a~edG~-klw~~d  296 (588)
T 2j04_A          285 SNKTSY-KVLLED  296 (588)
T ss_dssp             CSSCEE-EEEESS
T ss_pred             EcCCCC-EEEeec
Confidence            666777 888764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.00016  Score=71.57  Aligned_cols=238  Identities=11%  Similarity=0.038  Sum_probs=127.7

Q ss_pred             CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcE
Q 006979           88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (623)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l  167 (623)
                      ...+..+.|+|++.....-..   +|...+|........+....+..        +...+.++.++++ .+++...++.|
T Consensus        59 ~~~v~~~~~~~~~~~l~~~~~---dg~i~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~-~l~~~~~d~~i  126 (313)
T 3odt_A           59 QGFLNSVCYDSEKELLLFGGK---DTMINGVPLFATSGEDPLYTLIG--------HQGNVCSLSFQDG-VVISGSWDKTA  126 (313)
T ss_dssp             SSCEEEEEEETTTTEEEEEET---TSCEEEEETTCCTTSCC-CEECC--------CSSCEEEEEEETT-EEEEEETTSEE
T ss_pred             CccEEEEEECCCCCEEEEecC---CCeEEEEEeeecCCCCcccchhh--------cccCEEEEEecCC-EEEEEeCCCCE
Confidence            345667888883334433332   46766776654311111111111        1122345555555 44555567889


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCeeecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc-CCCc
Q 006979          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDF  245 (623)
Q Consensus       168 ~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~-~~~~  245 (623)
                      .++|.. .  ....+...    ........|+| +++.++....+         ..|.++|....    ...+.. ....
T Consensus       127 ~~~d~~-~--~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~----~~~~~~~~~~~  186 (313)
T 3odt_A          127 KVWKEG-S--LVYNLQAH----NASVWDAKVVSFSENKFLTASAD---------KTIKLWQNDKV----IKTFSGIHNDV  186 (313)
T ss_dssp             EEEETT-E--EEEEEECC----SSCEEEEEEEETTTTEEEEEETT---------SCEEEEETTEE----EEEECSSCSSC
T ss_pred             EEEcCC-c--EEEecccC----CCceeEEEEccCCCCEEEEEECC---------CCEEEEecCce----EEEEeccCccc
Confidence            999832 1  23333332    23345567777 88887766543         44777773322    333333 3445


Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW  325 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~  325 (623)
                      .....|+|||+ |+... .       ...|.++|+..+.   ....+.+..    ..+....|+|||+++... . ++  
T Consensus       187 i~~~~~~~~~~-~~~~~-~-------dg~i~i~d~~~~~---~~~~~~~~~----~~i~~~~~~~~~~l~~~~-~-dg--  246 (313)
T 3odt_A          187 VRHLAVVDDGH-FISCS-N-------DGLIKLVDMHTGD---VLRTYEGHE----SFVYCIKLLPNGDIVSCG-E-DR--  246 (313)
T ss_dssp             EEEEEEEETTE-EEEEE-T-------TSEEEEEETTTCC---EEEEEECCS----SCEEEEEECTTSCEEEEE-T-TS--
T ss_pred             EEEEEEcCCCe-EEEcc-C-------CCeEEEEECCchh---hhhhhhcCC----ceEEEEEEecCCCEEEEe-c-CC--
Confidence            56678999998 55443 2       2358999998763   333444444    456788999999644333 3 34  


Q ss_pred             eEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce
Q 006979          326 NLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (623)
Q Consensus       326 ~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~  393 (623)
                      .|..+|..+++...... ....+....|.            ++++ ++ +...+|.-++  +|+.+++.
T Consensus       247 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~------------~~~~-~~-~~~~dg~i~i--w~~~~~~~  299 (313)
T 3odt_A          247 TVRIWSKENGSLKQVITLPAISIWSVDCM------------SNGD-II-VGSSDNLVRI--FSQEKSRW  299 (313)
T ss_dssp             EEEEECTTTCCEEEEEECSSSCEEEEEEC------------TTSC-EE-EEETTSCEEE--EESCGGGC
T ss_pred             EEEEEECCCCceeEEEeccCceEEEEEEc------------cCCC-EE-EEeCCCcEEE--EeCCCCce
Confidence            46677877776444332 22223333333            2655 33 4545665444  45555443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.10  E-value=0.0024  Score=67.37  Aligned_cols=216  Identities=10%  Similarity=0.023  Sum_probs=118.4

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCC-----------------CCeeecceeeCCCCCEEEEEEeccCCCCCC
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE-----------------PLVSYADGIFDPRFNRYVTVREDRRQDALN  218 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~-----------------~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~  218 (623)
                      ..+++...++.|.++|+.++ ............                 ......-..++|+++.++....+       
T Consensus       218 ~~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-------  289 (464)
T 3v7d_B          218 KYIVTGSRDNTLHVWKLPKE-SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD-------  289 (464)
T ss_dssp             EEEEEEETTSCEEEEECCCC-CCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETT-------
T ss_pred             CEEEEEcCCCcEEEeeCCCC-cccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCC-------
Confidence            66777778888999998765 111110000000                 00000112367888887776554       


Q ss_pred             ceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979          219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (623)
Q Consensus       219 ~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~  298 (623)
                        ..|.++|+.+++.  ...+...........|+|||++|+....+.        .|.++|+..+.   ....+.+..  
T Consensus       290 --~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg--------~i~vwd~~~~~---~~~~~~~h~--  352 (464)
T 3v7d_B          290 --NTLIVWDVAQMKC--LYILSGHTDRIYSTIYDHERKRCISASMDT--------TIRIWDLENGE---LMYTLQGHT--  352 (464)
T ss_dssp             --SCEEEEETTTTEE--EEEECCCSSCEEEEEEETTTTEEEEEETTS--------CEEEEETTTTE---EEEEECCCS--
T ss_pred             --CeEEEEECCCCcE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCc---EEEEEeCCC--
Confidence              4588899987752  233433344556678999999888665332        38888988762   333444444  


Q ss_pred             ccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979          299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (623)
Q Consensus       299 ~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~  378 (623)
                        ..+....|+  ++.++.... +|.  |..+|+.+++............         ...+.+   +++.++..+  +
T Consensus       353 --~~v~~~~~~--~~~l~s~s~-dg~--v~vwd~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~l~~~~--d  411 (464)
T 3v7d_B          353 --ALVGLLRLS--DKFLVSAAA-DGS--IRGWDANDYSRKFSYHHTNLSA---------ITTFYV---SDNILVSGS--E  411 (464)
T ss_dssp             --SCEEEEEEC--SSEEEEEET-TSE--EEEEETTTCCEEEEEECTTCCC---------EEEEEE---CSSEEEEEE--T
T ss_pred             --CcEEEEEEc--CCEEEEEeC-CCc--EEEEECCCCceeeeecCCCCcc---------EEEEEe---CCCEEEEec--C
Confidence              445667776  454444444 354  5566776665333222211111         122332   666554433  5


Q ss_pred             CeEEEEEEeCCCCceee--cccCCcceEeeeecCCEEEEEEec
Q 006979          379 GRSYLGILDDFGHSLSL--LDIPFTDIDNITLGNDCLFVEGAS  419 (623)
Q Consensus       379 g~~~L~~~d~~~~~~~~--lt~~~~~v~~~~~~~~~~~~~~~s  419 (623)
                      |  .|.++|+.+++...  +......+..+..+++.+++.+.+
T Consensus       412 g--~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~  452 (464)
T 3v7d_B          412 N--QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEK  452 (464)
T ss_dssp             T--EEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEE
T ss_pred             C--eEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEe
Confidence            5  46667887777653  333344466665567777666554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.10  E-value=8.2e-05  Score=72.53  Aligned_cols=202  Identities=9%  Similarity=-0.127  Sum_probs=111.4

Q ss_pred             EEEeC-CEEEEEeCC--CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          150 FRIFG-DTVIFSNYK--DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       150 ~~~s~-d~l~f~~~~--~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      +.+++ +.+|++...  .+.|.++|++++ ...+.+.-+   ...+-.  .+.++|++|+...+..        +.++++
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg-~v~~~i~l~---~~~fge--Gi~~~g~~lyv~t~~~--------~~v~vi   91 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQTG-KVENIHKMD---DSYFGE--GLTLLNEKLYQVVWLK--------NIGFIY   91 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTTC-CEEEEEECC---TTCCEE--EEEEETTEEEEEETTC--------SEEEEE
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCCC-CEEEEEecC---CCcceE--EEEEeCCEEEEEEecC--------CEEEEE
Confidence            34455 466666533  467999999988 223333321   011112  2445577777766533        679999


Q ss_pred             EcCCCCcccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          227 ALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      |+++.+.  +..+..+ .+   .-..+|||++|+. + +.      ...|+++|.++...  ...+..+..+.-...+..
T Consensus        92 D~~t~~v--~~~i~~g~~~---g~glt~Dg~~l~v-s-~g------s~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           92 DRRTLSN--IKNFTHQMKD---GWGLATDGKILYG-S-DG------TSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             ETTTTEE--EEEEECCSSS---CCEEEECSSSEEE-E-CS------SSEEEEECTTTCCE--EEEEECEETTEECCCEEE
T ss_pred             ECCCCcE--EEEEECCCCC---eEEEEECCCEEEE-E-CC------CCeEEEEECCCCcE--EEEEEECCCCccccccee
Confidence            9998763  3444333 21   2347889998874 4 33      34699999877643  222222211000012346


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc-cc-----cccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AE-----FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-~~-----~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                      ..|. ||++| +...  ....|.++|+++++.....+.. ..     ...+. ....+.+.+.   ++++.+|++.  ..
T Consensus       157 le~~-dg~ly-vn~~--~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~-~~v~nGIa~~---~~~~~lfVTg--k~  226 (266)
T 2iwa_A          157 LEYI-NGEVW-ANIW--QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRD-IDVLNGIAWD---QENKRIFVTG--KL  226 (266)
T ss_dssp             EEEE-TTEEE-EEET--TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTT-CCCEEEEEEE---TTTTEEEEEE--TT
T ss_pred             EEEE-CCEEE-EecC--CCCeEEEEECCCCcEEEEEECCCcccccccccccc-cCceEEEEEc---CCCCEEEEEC--CC
Confidence            6777 77544 5554  2347999999999865443211 00     00000 0011334444   3778888876  45


Q ss_pred             eEEEEEEeCCC
Q 006979          380 RSYLGILDDFG  390 (623)
Q Consensus       380 ~~~L~~~d~~~  390 (623)
                      ..+|+.+++..
T Consensus       227 ~~~v~~i~l~~  237 (266)
T 2iwa_A          227 WPKLFEIKLHL  237 (266)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEec
Confidence            67788877654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.09  E-value=0.00031  Score=71.33  Aligned_cols=187  Identities=9%  Similarity=-0.038  Sum_probs=107.0

Q ss_pred             CCcEEEEeCCCCCCC-ceecCCCCCCCCeeecceeeCC--CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc
Q 006979          164 DQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~-~~~Lt~~~~~~~~~~~d~~~sP--dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~  240 (623)
                      ++.+..+++.++  . .+.+....   ........|+|  +|++++....+         ..+.++|+.+++   ...+.
T Consensus       103 ~~~~~~~~~~~~--~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~---~~~~~  165 (343)
T 3lrv_A          103 GNQITILDSKTN--KVLREIEVDS---ANEIIYMYGHNEVNTEYFIWADNR---------GTIGFQSYEDDS---QYIVH  165 (343)
T ss_dssp             TTEEEEEETTTC--CEEEEEECCC---SSCEEEEECCC---CCEEEEEETT---------CCEEEEESSSSC---EEEEE
T ss_pred             cCceEEeecCCc--ceeEEeecCC---CCCEEEEEcCCCCCCCEEEEEeCC---------CcEEEEECCCCc---EEEEE
Confidence            345666676655  3 23333210   23456788999  99988766554         458889998886   33322


Q ss_pred             -c-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcC-CCCCccccCcCceeCCCCcEEEE
Q 006979          241 -S-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDPTIVESPTEPKWSSKGELFFV  317 (623)
Q Consensus       241 -~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ws~DG~l~~~  317 (623)
                       . ....+...+|+|||+.|+....+        ..|.++|+..+..  ....+.. ..    ..+....|+|||++++.
T Consensus       166 ~~~~~~~i~~~~~~pdg~~lasg~~d--------g~i~iwd~~~~~~--~~~~~~~~h~----~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          166 SAKSDVEYSSGVLHKDSLLLALYSPD--------GILDVYNLSSPDQ--ASSRFPVDEE----AKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             CCCSSCCCCEEEECTTSCEEEEECTT--------SCEEEEESSCTTS--CCEECCCCTT----SCEEEEEECTTSSEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCC--------CEEEEEECCCCCC--CccEEeccCC----CCEEEEEEeCCCCEEEE
Confidence             2 22235667899999987755423        2388889987742  1133443 33    56778999999985555


Q ss_pred             EeCCCCeeeEEEEecCCCeEE-EEee---cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce
Q 006979          318 TDRKNGFWNLHKWIESNNEVL-AIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (623)
Q Consensus       318 ~~~~~g~~~L~~~d~~~~~~~-~l~~---~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~  393 (623)
                      ...  +  .|..+|+.+++.. .+..   ....+..       ..+.|.   |+++.|+..+..++.-+||.++...+.+
T Consensus       232 ~~~--~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~g~~l~~~s~~d~~i~v~~~~~~~~~~  297 (343)
T 3lrv_A          232 ECD--Q--TVVCFDLRKDVGTLAYPTYTIPEFKTGT-------VTYDID---DSGKNMIAYSNESNSLTIYKFDKKTKNW  297 (343)
T ss_dssp             EES--S--BEEEEETTSSTTCBSSCCCBC-----CC-------EEEEEC---TTSSEEEEEETTTTEEEEEEECTTTCSE
T ss_pred             EeC--C--eEEEEEcCCCCcceeecccccccccccc-------eEEEEC---CCCCEEEEecCCCCcEEEEEEcccccce
Confidence            444  3  6777787665421 1111   1011111       123333   3777666554437777888776555555


Q ss_pred             ee
Q 006979          394 SL  395 (623)
Q Consensus       394 ~~  395 (623)
                      ..
T Consensus       298 ~~  299 (343)
T 3lrv_A          298 TK  299 (343)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus}

Probab=98.09  E-value=1.2e-05  Score=78.99  Aligned_cols=98  Identities=10%  Similarity=-0.067  Sum_probs=62.1

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHH-HHHHhCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCA-TFLVGSGKAD  572 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~-~~l~~~~~~d  572 (623)
                      ..|.||++||++...  ..|..... + ..+|.|+.+|+||.+. +..         .....+++.+.+ +.+....  .
T Consensus        20 ~~~~lv~lhg~~~~~--~~~~~~~~-l-~~~~~v~~~d~~G~~~-~~~---------~~~~~~~~~~~~~~~i~~~~--~   83 (265)
T 3ils_A           20 ARKTLFMLPDGGGSA--FSYASLPR-L-KSDTAVVGLNCPYARD-PEN---------MNCTHGAMIESFCNEIRRRQ--P   83 (265)
T ss_dssp             SSEEEEEECCTTCCG--GGGTTSCC-C-SSSEEEEEEECTTTTC-GGG---------CCCCHHHHHHHHHHHHHHHC--S
T ss_pred             CCCEEEEECCCCCCH--HHHHHHHh-c-CCCCEEEEEECCCCCC-CCC---------CCCCHHHHHHHHHHHHHHhC--C
Confidence            346788899985433  34555555 4 6789999999999421 110         112233333222 2222221  1


Q ss_pred             CCceEEEEcChHHHHHHHHh----cCCCceeEEEecccC
Q 006979          573 EKRLCITGGSAGGYTTLAAL----AFRDTFKAGASLYGV  607 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~----~~~~~f~a~v~~~g~  607 (623)
                      .+++.++|||+||.+++.++    .+++.++..|...+.
T Consensus        84 ~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~  122 (265)
T 3ils_A           84 RGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAP  122 (265)
T ss_dssp             SCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred             CCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCC
Confidence            35899999999999999877    357778888877553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.08  E-value=0.00013  Score=70.30  Aligned_cols=200  Identities=11%  Similarity=-0.035  Sum_probs=112.1

Q ss_pred             EEeCCEEEEEeCCCC--cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          151 RIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       151 ~~s~d~l~f~~~~~~--~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      .++++.+|++...++  .|.++|++++ ...+.+.-.    . ++..-.+.++|++|+...+..        +.++++|+
T Consensus        49 ~~~~~~LyestG~~g~S~v~~vD~~Tg-kv~~~~~l~----~-~~FgeGit~~g~~ly~ltw~~--------~~v~v~D~  114 (262)
T 3nol_A           49 FYRNGYFYESTGLNGRSSIRKVDIESG-KTLQQIELG----K-RYFGEGISDWKDKIVGLTWKN--------GLGFVWNI  114 (262)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECTTTC-CEEEEEECC----T-TCCEEEEEEETTEEEEEESSS--------SEEEEEET
T ss_pred             EEECCEEEEECCCCCCceEEEEECCCC-cEEEEEecC----C-ccceeEEEEeCCEEEEEEeeC--------CEEEEEEC
Confidence            345667888776554  6999999988 223333321    1 111122556788887776533        78999999


Q ss_pred             CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       229 ~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      ++.+.  +..+.-+.+   +-..++||++|+ ++ +.      ..+|+++|.++...+....+..+..  -...+....|
T Consensus       115 ~t~~~--~~ti~~~~e---G~glt~dg~~L~-~S-dG------s~~i~~iDp~T~~v~~~I~V~~~g~--~~~~lNELe~  179 (262)
T 3nol_A          115 RNLRQ--VRSFNYDGE---GWGLTHNDQYLI-MS-DG------TPVLRFLDPESLTPVRTITVTAHGE--ELPELNELEW  179 (262)
T ss_dssp             TTCCE--EEEEECSSC---CCCEEECSSCEE-EC-CS------SSEEEEECTTTCSEEEEEECEETTE--ECCCEEEEEE
T ss_pred             ccCcE--EEEEECCCC---ceEEecCCCEEE-EE-CC------CCeEEEEcCCCCeEEEEEEeccCCc--cccccceeEE
Confidence            98763  334433321   234678998775 44 33      2459999988764322222111111  0022334678


Q ss_pred             CCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccc---cc-cccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE---FS-RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~---~~-~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      . ||++| +...  ....|.++|+.+++.........-   .. ...-....+.+++.+   +++.||++.  ..+..||
T Consensus       180 ~-~G~ly-an~w--~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp---~~~~lfVTG--K~Wp~~~  250 (262)
T 3nol_A          180 V-DGEIF-ANVW--QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK---EHHRLFVTG--KLWPKVF  250 (262)
T ss_dssp             E-TTEEE-EEET--TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET---TTTEEEEEE--TTCSEEE
T ss_pred             E-CCEEE-EEEc--cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC---CCCEEEEEC--CCCCceE
Confidence            6 78655 5554  234799999999986654432110   00 000001124455543   778888876  5677788


Q ss_pred             EEeC
Q 006979          385 ILDD  388 (623)
Q Consensus       385 ~~d~  388 (623)
                      .+.+
T Consensus       251 ev~~  254 (262)
T 3nol_A          251 EITL  254 (262)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.08  E-value=6.6e-05  Score=73.21  Aligned_cols=201  Identities=9%  Similarity=0.009  Sum_probs=116.9

Q ss_pred             cCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEEE
Q 006979           91 LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH  170 (623)
Q Consensus        91 ~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~~  170 (623)
                      ..++.++|++++|-....   .+...|...+..+| +...-++-+  .     .+.+..+++.++.++.....++.++++
T Consensus        23 ~~Gl~~~~dg~Lyvstg~---~~~s~v~~iD~~tg-~v~~~i~l~--~-----~~fgeGi~~~g~~lyv~t~~~~~v~vi   91 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGL---YGRSSVRQVALQTG-KVENIHKMD--D-----SYFGEGLTLLNEKLYQVVWLKNIGFIY   91 (266)
T ss_dssp             EEEEEECSTTEEEEEECS---TTTCEEEEEETTTC-CEEEEEECC--T-----TCCEEEEEEETTEEEEEETTCSEEEEE
T ss_pred             cccEEEeCCCeEEEECCC---CCCCEEEEEECCCC-CEEEEEecC--C-----CcceEEEEEeCCEEEEEEecCCEEEEE
Confidence            467888864566655433   24445777777654 332222111  0     111234677788999999888999999


Q ss_pred             eCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc--cCCC---c
Q 006979          171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSD---F  245 (623)
Q Consensus       171 d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~--~~~~---~  245 (623)
                      |.++. .....+..+  .+    ....+++||++++. +. . .      +.|+++|+++.+.  ++.+.  ....   +
T Consensus        92 D~~t~-~v~~~i~~g--~~----~g~glt~Dg~~l~v-s~-g-s------~~l~viD~~t~~v--~~~I~Vg~~~~p~~~  153 (266)
T 2iwa_A           92 DRRTL-SNIKNFTHQ--MK----DGWGLATDGKILYG-SD-G-T------SILYEIDPHTFKL--IKKHNVKYNGHRVIR  153 (266)
T ss_dssp             ETTTT-EEEEEEECC--SS----SCCEEEECSSSEEE-EC-S-S------SEEEEECTTTCCE--EEEEECEETTEECCC
T ss_pred             ECCCC-cEEEEEECC--CC----CeEEEEECCCEEEE-EC-C-C------CeEEEEECCCCcE--EEEEEECCCCccccc
Confidence            99875 223344321  01    11337789988764 43 2 1      6799999998763  23332  2111   2


Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE-cCC--------CCCccccCcCceeCCCCcEEE
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGF--------DPTIVESPTEPKWSSKGELFF  316 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~ws~DG~l~~  316 (623)
                      .+..+|. || +|+...|.       ..+|.++|.+++..  ..++. .+.        .+. ...+...+|+||++.+|
T Consensus       154 ~nele~~-dg-~lyvn~~~-------~~~V~vID~~tg~V--~~~I~~~g~~~~~~~~~~~~-~~v~nGIa~~~~~~~lf  221 (266)
T 2iwa_A          154 LNELEYI-NG-EVWANIWQ-------TDCIARISAKDGTL--LGWILLPNLRKKLIDEGFRD-IDVLNGIAWDQENKRIF  221 (266)
T ss_dssp             EEEEEEE-TT-EEEEEETT-------SSEEEEEETTTCCE--EEEEECHHHHHHHHHTTCTT-CCCEEEEEEETTTTEEE
T ss_pred             ceeEEEE-CC-EEEEecCC-------CCeEEEEECCCCcE--EEEEECCCcccccccccccc-cCceEEEEEcCCCCEEE
Confidence            3345677 77 56544432       34699999988743  12222 111        000 02346789999999777


Q ss_pred             EEeCCCCeeeEEEEecCC
Q 006979          317 VTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~  334 (623)
                      ++..  .+..|+.+++..
T Consensus       222 VTgk--~~~~v~~i~l~~  237 (266)
T 2iwa_A          222 VTGK--LWPKLFEIKLHL  237 (266)
T ss_dssp             EEET--TCSEEEEEEEEE
T ss_pred             EECC--CCCeEEEEEEec
Confidence            7775  566788877643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.08  E-value=0.0011  Score=65.04  Aligned_cols=272  Identities=10%  Similarity=0.055  Sum_probs=138.0

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCccc-CCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCc
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDI-TPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR  166 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l-~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~  166 (623)
                      ..+..+.+++++.+|+....   .+  .|.+++.. + +.... ++...        ......+.+++ .+++.....+.
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~---~~--~v~~~~~~-~-~~~~~~~~~~~--------~~~~~i~~~~~g~l~v~~~~~~~   84 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHK---AN--KISSLDQS-G-RIKEFEVPTPD--------AKVMCLIVSSLGDIWFTENGANK   84 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETT---TT--EEEEECTT-S-CEEEEECSSTT--------CCEEEEEECTTSCEEEEETTTTE
T ss_pred             CCcceeeECCCCCEEEEcCC---CC--eEEEECCC-C-ceEEEECCCCC--------CcceeEEECCCCCEEEEecCCCe
Confidence            35567777776667766532   13  35556554 2 33221 22110        01223444443 67777666678


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec--ccCCC
Q 006979          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL--VSGSD  244 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l--~~~~~  244 (623)
                      |+++|.+ +  ..+.+...  ..........++|+|+.++ .....        ..|+++|.+ ++   ...+  .....
T Consensus        85 v~~~d~~-g--~~~~~~~~--~~~~~~~~i~~~~~g~l~v-~~~~~--------~~i~~~~~~-g~---~~~~~~~~~~~  146 (300)
T 2qc5_A           85 IGKLSKK-G--GFTEYPLP--QPDSGPYGITEGLNGDIWF-TQLNG--------DRIGKLTAD-GT---IYEYDLPNKGS  146 (300)
T ss_dssp             EEEECTT-S--CEEEEECS--STTCCEEEEEECSTTCEEE-EETTT--------TEEEEECTT-SC---EEEEECSSTTC
T ss_pred             EEEECCC-C--CeEEecCC--CCCCCCccceECCCCCEEE-EccCC--------CeEEEECCC-CC---EEEccCCCCCC
Confidence            9999987 5  34433221  0123345677889997443 32211        569999988 55   3332  22223


Q ss_pred             cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCe
Q 006979          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF  324 (623)
Q Consensus       245 ~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~  324 (623)
                      ......++|||+ |++....       ...|++++.+ + .  ......... .  ..+....++++|++++....   .
T Consensus       147 ~~~~i~~d~~g~-l~v~~~~-------~~~i~~~~~~-g-~--~~~~~~~~~-~--~~~~~i~~d~~g~l~v~~~~---~  208 (300)
T 2qc5_A          147 YPAFITLGSDNA-LWFTENQ-------NNSIGRITNT-G-K--LEEYPLPTN-A--AAPVGITSGNDGALWFVEIM---G  208 (300)
T ss_dssp             CEEEEEECTTSS-EEEEETT-------TTEEEEECTT-C-C--EEEEECSST-T--CCEEEEEECTTSSEEEEETT---T
T ss_pred             CceeEEECCCCC-EEEEecC-------CCeEEEECCC-C-c--EEEeeCCCC-C--CCcceEEECCCCCEEEEccC---C
Confidence            344567899998 6555421       3458888873 3 1  222221111 1  34556778888876654432   3


Q ss_pred             eeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccC--Ccc
Q 006979          325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--FTD  402 (623)
Q Consensus       325 ~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~--~~~  402 (623)
                      ..|+++|+ +++...+... .....+      ..+.+.   ++ +.++++.  .+...|+++|.+ ++.+.+..+  ...
T Consensus       209 ~~i~~~~~-~g~~~~~~~~-~~~~~~------~~i~~d---~~-g~l~v~~--~~~~~i~~~~~~-g~~~~~~~~~~~~~  273 (300)
T 2qc5_A          209 NKIGRITT-TGEISEYDIP-TPNARP------HAITAG---KN-SEIWFTE--WGANQIGRITND-NTIQEYQLQTENAE  273 (300)
T ss_dssp             TEEEEECT-TCCEEEEECS-STTCCE------EEEEEC---ST-TCEEEEE--TTTTEEEEECTT-SCEEEEECCSTTCC
T ss_pred             CEEEEEcC-CCcEEEEECC-CCCCCc------eEEEEC---CC-CCEEEec--cCCCeEEEECCC-CcEEEEECCccCCc
Confidence            36888988 4554443211 011111      122332   24 3466655  234568888884 555544332  122


Q ss_pred             eEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 006979          403 IDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (623)
Q Consensus       403 v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~  432 (623)
                      ...+  +++ +.+++.. .   . .|++++++
T Consensus       274 ~~~i~~~~~-g~l~v~~-~---~-~i~~~~p~  299 (300)
T 2qc5_A          274 PHGITFGKD-GSVWFAL-K---C-KIGKLNLN  299 (300)
T ss_dssp             CCCEEECTT-SCEEEEC-S---S-EEEEEEEC
T ss_pred             cceeEeCCC-CCEEEEc-c---C-ceEEeCCC
Confidence            3333  333 4455432 2   2 67777653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.07  E-value=0.00011  Score=73.90  Aligned_cols=138  Identities=7%  Similarity=-0.065  Sum_probs=78.9

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCc---eecCCCCCCCCeeecceeeCC--CCCEEEEEEeccCCCCCCce
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNST  220 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~---~~Lt~~~~~~~~~~~d~~~sP--dG~~l~~v~~~~~~~~~~~~  220 (623)
                      +.+.+++++ ..+++...|+.|.++|+.++  ..   ..+...    ...+....|+|  +|+.|+....|         
T Consensus        16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~--~~~~~~~l~gH----~~~V~~v~~~~~~~~~~l~s~s~D---------   80 (316)
T 3bg1_A           16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNG--GQILIADLRGH----EGPVWQVAWAHPMYGNILASCSYD---------   80 (316)
T ss_dssp             EEEEEECGGGCEEEEEETTTEEEEEEEETT--EEEEEEEEECC----SSCEEEEEECCGGGSSCEEEEETT---------
T ss_pred             EEEeeEcCCCCEEEEEeCCCeEEEEEecCC--CcEEEEEEcCC----CccEEEEEeCCCCCCCEEEEEECC---------
Confidence            334455544 45666667888888988754  22   223321    23466778986  47777665544         


Q ss_pred             eEEEEEEcCCCCcccceecccCCCcccceeeCCC--CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCC
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT  298 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPD--G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~  298 (623)
                      ..+.+.|+.++.......+......+...+|+||  |+.|+-...|.        .|.+.++..++.......+.+..  
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~--------~i~lwd~~~~~~~~~~~~~~~h~--  150 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG--------AISLLTYTGEGQWEVKKINNAHT--  150 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS--------CEEEEEECSSSCEEECCBTTSSS--
T ss_pred             CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC--------CEEEEecCCCCCcceeeeecccc--
Confidence            3477778877642112333333445667889998  77777554332        27777877653211111222222  


Q ss_pred             ccccCcCceeCCC
Q 006979          299 IVESPTEPKWSSK  311 (623)
Q Consensus       299 ~~~~~~~~~ws~D  311 (623)
                        ..+....|+|+
T Consensus       151 --~~v~~~~~~~~  161 (316)
T 3bg1_A          151 --IGCNAVSWAPA  161 (316)
T ss_dssp             --SCBCCCEECCC
T ss_pred             --CCcceEEEccc
Confidence              45667889987

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.07  E-value=0.00074  Score=67.47  Aligned_cols=223  Identities=8%  Similarity=0.029  Sum_probs=114.3

Q ss_pred             EEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          150 FRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       150 ~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      .+++++ .+++++...++|+++|.+++  ..+.+..     ..+.....++|+|+ |++......      ...|+++|.
T Consensus        37 ia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~~~-----~~~p~gia~~~dG~-l~vad~~~~------~~~v~~~d~  102 (306)
T 2p4o_A           37 LASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATV-----EGKVSGLAFTSNGD-LVATGWNAD------SIPVVSLVK  102 (306)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCC--EEEEEEC-----SSEEEEEEECTTSC-EEEEEECTT------SCEEEEEEC
T ss_pred             EEECCCCCEEEEeCCCCeEEEECCCCc--eEEEEeC-----CCCceeEEEcCCCc-EEEEeccCC------cceEEEEcC
Confidence            455444 68888877888999998754  3333332     23455678999998 433332111      146889998


Q ss_pred             CCCCcccceeccc--CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcC-----CCCCccc
Q 006979          229 NGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-----FDPTIVE  301 (623)
Q Consensus       229 ~~g~~~~~~~l~~--~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~-----~~~~~~~  301 (623)
                      .+++   ++.+..  ...+...+...+++ .+++..  .     ....||++|..++..  ......+     ....-..
T Consensus       103 ~~g~---~~~~~~~~~~~~~~g~~~~~~~-~~~v~d--~-----~~g~i~~~d~~~~~~--~v~~~~~~~~~~~~~~~~~  169 (306)
T 2p4o_A          103 SDGT---VETLLTLPDAIFLNGITPLSDT-QYLTAD--S-----YRGAIWLIDVVQPSG--SIWLEHPMLARSNSESVFP  169 (306)
T ss_dssp             TTSC---EEEEEECTTCSCEEEEEESSSS-EEEEEE--T-----TTTEEEEEETTTTEE--EEEEECGGGSCSSTTCCSC
T ss_pred             CCCe---EEEEEeCCCccccCcccccCCC-cEEEEE--C-----CCCeEEEEeCCCCcE--eEEEECCccccccccCCCC
Confidence            8887   444432  22344445555554 455443  2     134699999765410  1111110     0000001


Q ss_pred             cCcCceeCCCCcEEEEEeCCCCeeeEEEEecCC-CeE--EEEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC
Q 006979          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN-NEV--LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN  378 (623)
Q Consensus       302 ~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~-~~~--~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~  378 (623)
                      ....+  ++||+.+|+++.  +..+|++++.++ ++.  ..+...   ..      ..+.+.+.+   +| .+|++..  
T Consensus       170 ~pngi--s~dg~~lyv~d~--~~~~I~~~~~~~~g~~~~~~~~~~---~~------~P~gi~vd~---dG-~l~va~~--  230 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNT--EKMLLLRIPVDSTDKPGEPEIFVE---QT------NIDDFAFDV---EG-NLYGATH--  230 (306)
T ss_dssp             SEEEE--EEETTEEEEEET--TTTEEEEEEBCTTSCBCCCEEEEE---SC------CCSSEEEBT---TC-CEEEECB--
T ss_pred             cCCCc--CcCCCEEEEEeC--CCCEEEEEEeCCCCCCCccEEEec---cC------CCCCeEECC---CC-CEEEEeC--
Confidence            12223  788886666765  445788888764 331  111111   01      123444431   44 5655543  


Q ss_pred             CeEEEEEEeCCCCcee--ecccCCcceEee--e---ecCCEEEEEEe
Q 006979          379 GRSYLGILDDFGHSLS--LLDIPFTDIDNI--T---LGNDCLFVEGA  418 (623)
Q Consensus       379 g~~~L~~~d~~~~~~~--~lt~~~~~v~~~--~---~~~~~~~~~~~  418 (623)
                      +..+|++++.++....  .+..+......+  .   ++++++|+...
T Consensus       231 ~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          231 IYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             TTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            3346888998743322  233332223333  3   46677777664

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.06  E-value=0.00096  Score=68.79  Aligned_cols=290  Identities=10%  Similarity=0.017  Sum_probs=144.3

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ...+..+.|+| +..++ .-.   .+|...+|.....   +....+..        |...+.+.+++++ ..+++...++
T Consensus        66 ~~~V~~~~~sp~~~~l~-s~s---~D~~v~iWd~~~~---~~~~~~~~--------h~~~v~~~~~s~~g~~las~~~d~  130 (380)
T 3iz6_a           66 SGKVYSLDWTPEKNWIV-SAS---QDGRLIVWNALTS---QKTHAIKL--------HCPWVMECAFAPNGQSVACGGLDS  130 (380)
T ss_dssp             SSCEEEEEECTTSSCEE-EEE---TTSEEEEEETTTT---EEEEEEEC--------CCTTCCCCEECTTSSEEEECCSSS
T ss_pred             ccEEEEEEEcCCCCEEE-EEe---CCCeEEEEECCCC---ccceEEec--------CCCCEEEEEECCCCCEEEEeeCCC
Confidence            44567888998 55443 332   2477777754322   21111110        1112334455555 4556666777


Q ss_pred             cEEEEeCCCCCC------CceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec
Q 006979          166 RLYKHSIDSKDS------SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL  239 (623)
Q Consensus       166 ~l~~~d~~~g~~------~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l  239 (623)
                      .+.++++.+...      ..+.++..    ........|+|++...+++....        ..+.++|+.+++.  ...+
T Consensus       131 ~v~iw~~~~~~~~~~~~~~~~~~~gh----~~~v~~~~~~~~~~~~l~s~s~D--------~~i~~wd~~~~~~--~~~~  196 (380)
T 3iz6_a          131 ACSIFNLSSQADRDGNMPVSRVLTGH----KGYASSCQYVPDQETRLITGSGD--------QTCVLWDVTTGQR--ISIF  196 (380)
T ss_dssp             CCEEEECCCCSSCCCSSTTCCBCCCC----SSCCCCCBCCSSSSSCEEEECTT--------SCEEEECTTTCCE--EEEE
T ss_pred             cEEEEECCCCccccCCccceeeccCC----CcceEEEEEecCCCCEEEEECCC--------CcEEEEEcCCCcE--EEEe
Confidence            788888764300      01122221    22345567888754433333322        4588889988762  2222


Q ss_pred             c----cC-CCcccceeeCC-CCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          240 V----SG-SDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       240 ~----~~-~~~~~~p~wSP-DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      .    .+ ...+....|+| |++.|+-...|.        .|.+.|+...+.  ....+.+..    ..+....|+|||+
T Consensus       197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~--------~v~~wd~~~~~~--~~~~~~~h~----~~v~~v~~~p~~~  262 (380)
T 3iz6_a          197 GSEFPSGHTADVLSLSINSLNANMFISGSCDT--------TVRLWDLRITSR--AVRTYHGHE----GDINSVKFFPDGQ  262 (380)
T ss_dssp             CCCSSSSCCSCEEEEEECSSSCCEEEEEETTS--------CEEEEETTTTCC--CCEEECCCS----SCCCEEEECTTSS
T ss_pred             ecccCCCCccCeEEEEeecCCCCEEEEEECCC--------eEEEEECCCCCc--ceEEECCcC----CCeEEEEEecCCC
Confidence            1    11 12234456766 788776555332        378888864321  334455554    5678899999998


Q ss_pred             EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce
Q 006979          314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL  393 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~  393 (623)
                      +++.... ++.  |..+|+.+++............. .-........|.   |+++.++ +...+|.  |+++|...++.
T Consensus       263 ~l~s~s~-D~~--i~lwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s---~~g~~l~-~g~~dg~--i~vwd~~~~~~  332 (380)
T 3iz6_a          263 RFGTGSD-DGT--CRLFDMRTGHQLQVYNREPDRND-NELPIVTSVAFS---ISGRLLF-AGYSNGD--CYVWDTLLAEM  332 (380)
T ss_dssp             EEEEECS-SSC--EEEEETTTTEEEEEECCCCSSSC-CSSCSCSEEEEC---SSSSEEE-EECTTSC--EEEEETTTCCE
T ss_pred             eEEEEcC-CCe--EEEEECCCCcEEEEecccccccc-cccCceEEEEEC---CCCCEEE-EEECCCC--EEEEECCCCce
Confidence            5555444 354  55567777765444322111000 000111233443   2666554 4444554  55567665554


Q ss_pred             e-ecc----cCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCC
Q 006979          394 S-LLD----IPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDH  434 (623)
Q Consensus       394 ~-~lt----~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~  434 (623)
                      . .+.    .....+..+  ++++..+ ++++..   ..|...++.++
T Consensus       333 ~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D---~~i~iW~~~~~  376 (380)
T 3iz6_a          333 VLNLGTLQNSHEGRISCLGLSSDGSAL-CTGSWD---KNLKIWAFSGH  376 (380)
T ss_dssp             EEEECCSCSSCCCCCCEEEECSSSSEE-EEECTT---SCEEEEECCSS
T ss_pred             EEEEecccCCCCCceEEEEECCCCCEE-EEeeCC---CCEEEEecCCC
Confidence            3 331    122234444  5666643 344322   34555565544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.06  E-value=6.6e-05  Score=76.54  Aligned_cols=155  Identities=15%  Similarity=0.100  Sum_probs=96.9

Q ss_pred             EEEEEeCCC--C--cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEecc--CC------C--CCCcee
Q 006979          156 TVIFSNYKD--Q--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR--RQ------D--ALNSTT  221 (623)
Q Consensus       156 ~l~f~~~~~--~--~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~--~~------~--~~~~~~  221 (623)
                      .+++++-..  +  .||.++.+++  ..+.+..-.+.+..+.+|..++|+|++++  ..++  ..      +  ......
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G~fyv--t~~~~ftd~~~~~~e~~~~~~~g  203 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHFYA--TNDHYFIDPYLKSWEMHLGLAWS  203 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEEEE--EESCSCSSHHHHHHHHHTTCCCE
T ss_pred             EEEEEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCCCEEe--cCCcEeCCcccccchhhccCCcc
Confidence            466665442  2  3777877644  33333322223456778999999997433  3221  10      0  012347


Q ss_pred             EEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc
Q 006979          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~  301 (623)
                      .||++|..  +   ++.+..+-.+.++.+|||||++|++....       ..+|++++++..+.+...+.+ ...    .
T Consensus       204 ~vyr~d~~--~---~~~~~~~l~~pNGia~spDg~~lYvadt~-------~~~I~~~~~~~~g~l~~~~~~-~~~----g  266 (355)
T 3sre_A          204 FVTYYSPN--D---VRVVAEGFDFANGINISPDGKYVYIAELL-------AHKIHVYEKHANWTLTPLRVL-SFD----T  266 (355)
T ss_dssp             EEEEECTT--C---CEEEEEEESSEEEEEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEE-ECS----S
T ss_pred             EEEEEECC--e---EEEeecCCcccCcceECCCCCEEEEEeCC-------CCeEEEEEECCCCcEecCEEE-eCC----C
Confidence            89999873  4   66677777778899999999999988643       346999999866555555555 223    4


Q ss_pred             cCcCceeCC-CCcEEEEEeCCCCeeeEEEEecC
Q 006979          302 SPTEPKWSS-KGELFFVTDRKNGFWNLHKWIES  333 (623)
Q Consensus       302 ~~~~~~ws~-DG~l~~~~~~~~g~~~L~~~d~~  333 (623)
                      .+..+...+ +|.++.....  +..++.+++++
T Consensus       267 ~PDGi~vD~e~G~lwva~~~--~g~~v~~~~P~  297 (355)
T 3sre_A          267 LVDNISVDPVTGDLWVGCHP--NGMRIFFYDAE  297 (355)
T ss_dssp             EEEEEEECTTTCCEEEEEES--CHHHHHSCCTT
T ss_pred             CCceEEEeCCCCcEEEEecC--CceEEEEECCC
Confidence            566788888 5876654554  33445566665

>2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus}

Probab=98.04  E-value=1.5e-05  Score=83.35  Aligned_cols=108  Identities=9%  Similarity=-0.020  Sum_probs=65.2

Q ss_pred             CCEEEEecCCCCCc------ccCcCC----HHhHHHHcCceEEEEECCCCCCCCchhHH------HhhccCCccch----
Q 006979          495 PPLLVKSHGGPTSE------ARGILN----LSIQYWTSRGWAFVDVNYGGSTGYGREFR------ERLLGRWGIVD----  554 (623)
Q Consensus       495 ~Pliv~~hGg~~~~------~~~~~~----~~~~~~a~~G~~v~~~d~rGs~~~g~~~~------~~~~~~~g~~~----  554 (623)
                      .|.||++||.....      ....|.    ..++.|+++||.|+++|++|.|.....-.      +...+..+...    
T Consensus        52 ~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~~~~~~l~~~i~~g~g~sg~~~~~~~  131 (431)
T 2hih_A           52 KDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSEKY  131 (431)
T ss_dssp             SSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHCEEEECCHHHHHHH
T ss_pred             CCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCccchHHhhhhhhhccccccccccccC
Confidence            35588899985431      122332    47888899999999999999554321100      00011111000    


Q ss_pred             -----HHHHHHHHHHHHhCCCCC-CCceEEEEcChHHHHHHHHh-c--------------------------CCCceeEE
Q 006979          555 -----VNDCCSCATFLVGSGKAD-EKRLCITGGSAGGYTTLAAL-A--------------------------FRDTFKAG  601 (623)
Q Consensus       555 -----~~D~~~~~~~l~~~~~~d-~~rv~i~G~S~GG~~~~~~~-~--------------------------~~~~f~a~  601 (623)
                           .+|+.+    ++++  .. .+++.|+||||||.+++.++ .                          +|++++.+
T Consensus       132 ~~~~~a~dl~~----ll~~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~sl  205 (431)
T 2hih_A          132 GHERYGKTYEG----VLKD--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTSI  205 (431)
T ss_dssp             TCCSEEEEECC----SCTT--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEEE
T ss_pred             CHHHHHHHHHH----HHHH--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeEE
Confidence                 001111    1111  12 37999999999999999876 4                          58899999


Q ss_pred             EecccCC
Q 006979          602 ASLYGVS  608 (623)
Q Consensus       602 v~~~g~~  608 (623)
                      |.+.++.
T Consensus       206 v~i~tP~  212 (431)
T 2hih_A          206 TTIATPH  212 (431)
T ss_dssp             EEESCCT
T ss_pred             EEECCCC
Confidence            9998764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.04  E-value=6e-05  Score=85.74  Aligned_cols=199  Identities=9%  Similarity=0.018  Sum_probs=111.4

Q ss_pred             EEEeCC-EEEEEeCCCCcEEEEeCCCCC-CCceecCCCCCCCCeeecceeeCCC--CCEEEEEEeccCCCCCCceeEEEE
Q 006979          150 FRIFGD-TVIFSNYKDQRLYKHSIDSKD-SSPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       150 ~~~s~d-~l~f~~~~~~~l~~~d~~~g~-~~~~~Lt~~~~~~~~~~~d~~~sPd--G~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      .+++++ ..+++...++.|.++++.++. .....+...    ........|+|+  |+.|+....+         +.|.+
T Consensus        15 l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h----~~~V~~l~~s~~~~~~~l~s~s~D---------g~I~v   81 (753)
T 3jro_A           15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GKVLI   81 (753)
T ss_dssp             ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC----SSCEEEEEECCTTSCSEEEEEETT---------SCEEE
T ss_pred             EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCC----cCceEEEEecCCCCCCEEEEEeCC---------CeEEE
Confidence            333433 345555567888888886430 112223321    334667889988  8888776654         45788


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCC--CCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPD--G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      +|+.++.......+......+....|+||  |+.|+....+        ..|.++|+..+... ....+.+..    ..+
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d--------g~I~vwdl~~~~~~-~~~~~~~~~----~~v  148 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD--------GKVSVVEFKENGTT-SPIIIDAHA----IGV  148 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT--------SEEEEEECCSSSCC-CCEEEECCS----SCE
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC--------CcEEEEEeecCCCc-ceeEeecCC----Cce
Confidence            88887742113334444455667889999  9988877533        34888898776321 222334433    456


Q ss_pred             cCceeCC-------------CCcEEEEEeCCCCeeeEEEEecCCCeEEEEe---ecccccccccccccCcceeEEeecCC
Q 006979          304 TEPKWSS-------------KGELFFVTDRKNGFWNLHKWIESNNEVLAIY---SLDAEFSRPLWVFGINSYEIIQSHGE  367 (623)
Q Consensus       304 ~~~~ws~-------------DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~---~~~~~~~~~~w~~~~~~~~~l~~s~~  367 (623)
                      ....|+|             ||++++.... +|.-++|.+.........+.   .....+....|.+            +
T Consensus       149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp------------~  215 (753)
T 3jro_A          149 NSASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP------------T  215 (753)
T ss_dssp             EEEEECCCC---------CGGGCCEEEEET-TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC------------C
T ss_pred             EEEEecCcccccccccccCCCCCEEEEEEC-CCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc------------C
Confidence            7888998             5774444444 46555554433222222222   1222233333332            5


Q ss_pred             C--CEEEEEEEECCeEEEEEEe
Q 006979          368 K--NLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       368 ~--~~l~~~~~~~g~~~L~~~d  387 (623)
                      +  +.++++...+|.-++|-++
T Consensus       216 ~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          216 VLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             CSSSEEEEEEESSSCEEEEEES
T ss_pred             CCCCCEEEEEecCCEEEEecCC
Confidence            3  5666667677776666554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=98.02  E-value=0.00015  Score=74.29  Aligned_cols=156  Identities=13%  Similarity=0.108  Sum_probs=94.4

Q ss_pred             EEEeCCEEEEE-eCCCCcEEEEeCCCCCCC-----------------ceecCCCCCCCCeeecceeeCCCCCEEEEEEec
Q 006979          150 FRIFGDTVIFS-NYKDQRLYKHSIDSKDSS-----------------PLPITPDYGEPLVSYADGIFDPRFNRYVTVRED  211 (623)
Q Consensus       150 ~~~s~d~l~f~-~~~~~~l~~~d~~~g~~~-----------------~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~  211 (623)
                      .+++...+++. ...++.|.++|+.++  .                 ...+...    .......+|+|||++|+....+
T Consensus       143 ~~~s~~~la~~sg~~~g~v~iwd~~~~--~~~~~~~~~~~~~~~~p~~~~~~~h----~~~v~~~~~s~~g~~l~s~s~d  216 (355)
T 3vu4_A          143 CEFSNGLLVYSNEFNLGQIHITKLQSS--GSATTQDQGVQQKAILGKGVLIKAH----TNPIKMVRLNRKSDMVATCSQD  216 (355)
T ss_dssp             EEEETTEEEEEESSCTTCEEEEECCC--------------------CCEEECCC----SSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEccEEEEeCCCcCcEEEEEECCCC--CccccccccccccccCcccEEEEcc----CCceEEEEECCCCCEEEEEeCC
Confidence            34445667776 567788999999865  2                 2333322    3446678899999988776654


Q ss_pred             cCCCCCCceeE-EEEEEcCCCCcccceeccc--CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee
Q 006979          212 RRQDALNSTTE-IVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK  288 (623)
Q Consensus       212 ~~~~~~~~~~~-L~~idl~~g~~~~~~~l~~--~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~  288 (623)
                               .. +.+.|+.+++.  +..+..  ....+...+|||||++|+....|        ..|.+.|+..+.. ..
T Consensus       217 ---------~~~v~iwd~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d--------~~v~iw~~~~~~~-~~  276 (355)
T 3vu4_A          217 ---------GTIIRVFKTEDGVL--VREFRRGLDRADVVDMKWSTDGSKLAVVSDK--------WTLHVFEIFNDQD-NK  276 (355)
T ss_dssp             ---------CSEEEEEETTTCCE--EEEEECTTCCSCEEEEEECTTSCEEEEEETT--------CEEEEEESSCCSC-CC
T ss_pred             ---------CCEEEEEECCCCcE--EEEEEcCCCCCcEEEEEECCCCCEEEEEECC--------CEEEEEEccCCCC-cc
Confidence                     44 88889988762  344442  33456678899999998877633        2477888765421 01


Q ss_pred             eEEEcC-----C-CCCc-----------cccCcCceeCCCCcEEEEEeCCCCeeeEEEEec
Q 006979          289 RVCVAG-----F-DPTI-----------VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE  332 (623)
Q Consensus       289 ~~~~~~-----~-~~~~-----------~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~  332 (623)
                      ...+..     . ...|           .......+|++||+.+++... +|.+++|.+..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~-dg~~~~~~~~~  336 (355)
T 3vu4_A          277 RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH-TRMIETFKVVF  336 (355)
T ss_dssp             SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT-TTEEEEEEEEE
T ss_pred             cccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC-CCeEEEEEEEc
Confidence            111100     0 0000           011245789999985555554 57777776654

>2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A

Probab=98.01  E-value=2e-05  Score=81.28  Aligned_cols=100  Identities=13%  Similarity=0.080  Sum_probs=62.1

Q ss_pred             CEEEEecCCCCCccc-----CcCC----HHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHH--
Q 006979          496 PLLVKSHGGPTSEAR-----GILN----LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF--  564 (623)
Q Consensus       496 Pliv~~hGg~~~~~~-----~~~~----~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~--  564 (623)
                      |.||++||.......     ..|.    ..++.|+++||.|+.+|++|.|   .....          .+++...++.  
T Consensus         7 ~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g~G---~s~~~----------a~~l~~~i~~~~   73 (387)
T 2dsn_A            7 APIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLS---SNWDR----------ACEAYAQLVGGT   73 (387)
T ss_dssp             CCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCSSB---CHHHH----------HHHHHHHHHCEE
T ss_pred             CcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCCCC---Ccccc----------HHHHHHHHHhhh
Confidence            447889998543221     1233    3448899999999999999854   32211          1111111110  


Q ss_pred             ------HHh-----------CCC----CCCCceEEEEcChHHHHHHHHhc--------------------CC------Cc
Q 006979          565 ------LVG-----------SGK----ADEKRLCITGGSAGGYTTLAALA--------------------FR------DT  597 (623)
Q Consensus       565 ------l~~-----------~~~----~d~~rv~i~G~S~GG~~~~~~~~--------------------~~------~~  597 (623)
                            +.+           ...    ...++|.++||||||.++..++.                    +|      ++
T Consensus        74 vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~~~  153 (387)
T 2dsn_A           74 VDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGHHF  153 (387)
T ss_dssp             EECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCC
T ss_pred             hhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccccc
Confidence                  100           001    23479999999999999998884                    25      68


Q ss_pred             eeEEEecccCC
Q 006979          598 FKAGASLYGVS  608 (623)
Q Consensus       598 f~a~v~~~g~~  608 (623)
                      ++.+|.+++..
T Consensus       154 V~sLV~i~tP~  164 (387)
T 2dsn_A          154 VLSVTTIATPH  164 (387)
T ss_dssp             EEEEEEESCCT
T ss_pred             eeEEEEECCCC
Confidence            89999887753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.00  E-value=0.00014  Score=70.10  Aligned_cols=199  Identities=10%  Similarity=0.041  Sum_probs=115.4

Q ss_pred             CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEEEe
Q 006979           92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS  171 (623)
Q Consensus        92 ~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~~d  171 (623)
                      .++.++ ++.+|...+.   .|+..|...+..+| +...-++-+       .++-+...++.+++|+.....++.++++|
T Consensus        46 qGL~~~-~~~LyestG~---~g~S~v~~vD~~Tg-kv~~~~~l~-------~~~FgeGit~~g~~ly~ltw~~~~v~v~D  113 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGL---NGRSSIRKVDIESG-KTLQQIELG-------KRYFGEGISDWKDKIVGLTWKNGLGFVWN  113 (262)
T ss_dssp             EEEEEE-TTEEEEEEEE---TTEEEEEEECTTTC-CEEEEEECC-------TTCCEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred             ceEEEE-CCEEEEECCC---CCCceEEEEECCCC-cEEEEEecC-------CccceeEEEEeCCEEEEEEeeCCEEEEEE
Confidence            577788 7777766544   47777888888765 322211111       01113346667889999988889999999


Q ss_pred             CCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC---Ccccc
Q 006979          172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS---DFYAF  248 (623)
Q Consensus       172 ~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~---~~~~~  248 (623)
                      +++. .....+.-+    .   ....+++||++|+.. . ..       ..|+.+|+++.+......+..+.   ...+.
T Consensus       114 ~~t~-~~~~ti~~~----~---eG~glt~dg~~L~~S-d-Gs-------~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE  176 (262)
T 3nol_A          114 IRNL-RQVRSFNYD----G---EGWGLTHNDQYLIMS-D-GT-------PVLRFLDPESLTPVRTITVTAHGEELPELNE  176 (262)
T ss_dssp             TTTC-CEEEEEECS----S---CCCCEEECSSCEEEC-C-SS-------SEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred             CccC-cEEEEEECC----C---CceEEecCCCEEEEE-C-CC-------CeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence            9876 233444432    1   113356788776553 2 11       67999999987632112222222   22233


Q ss_pred             eeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC------CccccCcCceeCCCCcEEEEEeCCC
Q 006979          249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP------TIVESPTEPKWSSKGELFFVTDRKN  322 (623)
Q Consensus       249 p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ws~DG~l~~~~~~~~  322 (623)
                      .+|. || +|+...|.       ..+|.++|..++.. ....-+.+..+      .-.......+|+|+++.+|++..  
T Consensus       177 Le~~-~G-~lyan~w~-------~~~I~vIDp~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK--  244 (262)
T 3nol_A          177 LEWV-DG-EIFANVWQ-------TNKIVRIDPETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK--  244 (262)
T ss_dssp             EEEE-TT-EEEEEETT-------SSEEEEECTTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET--
T ss_pred             eEEE-CC-EEEEEEcc-------CCeEEEEECCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC--
Confidence            5676 77 46655443       34699999887742 11111211100      00023467899999886667665  


Q ss_pred             CeeeEEEEe
Q 006979          323 GFWNLHKWI  331 (623)
Q Consensus       323 g~~~L~~~d  331 (623)
                      .|-.||.+.
T Consensus       245 ~Wp~~~ev~  253 (262)
T 3nol_A          245 LWPKVFEIT  253 (262)
T ss_dssp             TCSEEEEEE
T ss_pred             CCCceEEEE
Confidence            566788654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.00  E-value=0.0011  Score=66.84  Aligned_cols=158  Identities=7%  Similarity=-0.053  Sum_probs=89.6

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCC---C---ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCc
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDS---S---PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNS  219 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~---~---~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~  219 (623)
                      +.+.+++++ .++++...++.|.++++..+..   .   ...+...    ........|+|+|++|+....|        
T Consensus        61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h----~~~V~~v~~sp~g~~las~s~D--------  128 (330)
T 2hes_X           61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH----ENEVKGVAWSNDGYYLATCSRD--------  128 (330)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC--------CEEEEEECTTSCEEEEEETT--------
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC----CCcEEEEEECCCCCEEEEEeCC--------
Confidence            445666665 5566666788899998853200   0   1122221    2346678899999988876654        


Q ss_pred             eeEEEEEEcCC-CCc-ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC
Q 006979          220 TTEIVAIALNG-QNI-QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP  297 (623)
Q Consensus       220 ~~~L~~idl~~-g~~-~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~  297 (623)
                       ..+.+.|+.. +.. +....+......+....|+|||+.|+-...|.        .|.+.+...+.. .....+.+.. 
T Consensus       129 -~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~--------~i~iW~~~~~~~-~~~~~~~~h~-  197 (330)
T 2hes_X          129 -KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD--------TVRIWKDYDDDW-ECVAVLNGHE-  197 (330)
T ss_dssp             -SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS--------CEEEEEEETTEE-EEEEEECCCS-
T ss_pred             -CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC--------eEEEEECCCCCe-eEEEEccCCC-
Confidence             3477778743 221 11223333344566788999999888666443        266667654411 1233344444 


Q ss_pred             CccccCcCceeCCC--CcEEEEEeCCCCeeeEEEEe
Q 006979          298 TIVESPTEPKWSSK--GELFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       298 ~~~~~~~~~~ws~D--G~l~~~~~~~~g~~~L~~~d  331 (623)
                         ..+....|+|+  +.+++.... ++.-+||.+.
T Consensus       198 ---~~v~~~~~~~~~~~~~l~s~s~-D~~v~iw~~~  229 (330)
T 2hes_X          198 ---GTVWSSDFDKTEGVFRLCSGSD-DSTVRVWKYM  229 (330)
T ss_dssp             ---SCEEEEEECCSSSSCEEEEEET-TSCEEEEEEE
T ss_pred             ---CcEEEEEecCCCCeeEEEEEeC-CCeEEEEEec
Confidence               45667889998  444444444 5666676554

>2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A

Probab=97.99  E-value=2.9e-06  Score=81.92  Aligned_cols=84  Identities=10%  Similarity=0.065  Sum_probs=58.8

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC-CCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKAD  572 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~-~~~d  572 (623)
                      ..|.||++||.+  .....|...+..|++ +|.|+.+|+||.|.....            ..+|+.+.++.+.+. +...
T Consensus        12 ~~~~lv~lhg~g--~~~~~~~~~~~~L~~-~~~vi~~Dl~GhG~S~~~------------~~~~~~~~~~~~~~~l~~~~   76 (242)
T 2k2q_B           12 EKTQLICFPFAG--GYSASFRPLHAFLQG-ECEMLAAEPPGHGTNQTS------------AIEDLEELTDLYKQELNLRP   76 (242)
T ss_dssp             CCCEEESSCCCC--HHHHHHHHHHHHHCC-SCCCEEEECCSSCCSCCC------------TTTHHHHHHHHTTTTCCCCC
T ss_pred             CCceEEEECCCC--CCHHHHHHHHHhCCC-CeEEEEEeCCCCCCCCCC------------CcCCHHHHHHHHHHHHHhhc
Confidence            346688899984  333456667777754 699999999996654221            135666777766543 2222


Q ss_pred             CCceEEEEcChHHHHHHHHh
Q 006979          573 EKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~  592 (623)
                      .+++.++||||||.+++.++
T Consensus        77 ~~~~~lvGhSmGG~iA~~~A   96 (242)
T 2k2q_B           77 DRPFVLFGHSMGGMITFRLA   96 (242)
T ss_dssp             CSSCEEECCSSCCHHHHHHH
T ss_pred             CCCEEEEeCCHhHHHHHHHH
Confidence            36899999999999999888

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.99  E-value=0.00098  Score=70.47  Aligned_cols=235  Identities=12%  Similarity=0.060  Sum_probs=128.4

Q ss_pred             CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeC--CCCCEEEEEEeccCCCCCCceeEEE
Q 006979          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFD--PRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~s--PdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      +.+..++++..+++...++.|.++|+.++ .....+...    ........|+  |+++.++....+         ..+.
T Consensus       165 V~~l~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~h----~~~v~~l~~~~~~~~~~l~s~s~d---------~~i~  230 (464)
T 3v7d_B          165 VWALKYAHGGILVSGSTDRTVRVWDIKKG-CCTHVFEGH----NSTVRCLDIVEYKNIKYIVTGSRD---------NTLH  230 (464)
T ss_dssp             EEEEEECSTTEEEEEETTSCEEEEETTTT-EEEEEECCC----SSCEEEEEEEESSSCEEEEEEETT---------SCEE
T ss_pred             EEEEEEcCCCEEEEEeCCCCEEEEECCCC-cEEEEECCC----CCccEEEEEecCCCCCEEEEEcCC---------CcEE
Confidence            44566666656677778889999999876 223333322    2234444555  677777665543         4477


Q ss_pred             EEEcCCCCcccc--------------------eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCC
Q 006979          225 AIALNGQNIQEP--------------------KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG  284 (623)
Q Consensus       225 ~idl~~g~~~~~--------------------~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~  284 (623)
                      ++|+.++.....                    .....+.. ..-..++|+|++|+....+.        .|.++|+..+.
T Consensus       231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~d~--------~i~vwd~~~~~  301 (464)
T 3v7d_B          231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM-ASVRTVSGHGNIVVSGSYDN--------TLIVWDVAQMK  301 (464)
T ss_dssp             EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS-SCEEEEEEETTEEEEEETTS--------CEEEEETTTTE
T ss_pred             EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc-ceEEEEcCCCCEEEEEeCCC--------eEEEEECCCCc
Confidence            778776541000                    00001111 11234789999888766332        38888988762


Q ss_pred             ceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEe
Q 006979          285 DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQ  363 (623)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~  363 (623)
                         ....+.+..    ..+....|+|||+.++.... ++  .|..+|..+++...... ....+.         .+.+  
T Consensus       302 ---~~~~~~~~~----~~v~~~~~~~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~h~~~v~---------~~~~--  360 (464)
T 3v7d_B          302 ---CLYILSGHT----DRIYSTIYDHERKRCISASM-DT--TIRIWDLENGELMYTLQGHTALVG---------LLRL--  360 (464)
T ss_dssp             ---EEEEECCCS----SCEEEEEEETTTTEEEEEET-TS--CEEEEETTTTEEEEEECCCSSCEE---------EEEE--
T ss_pred             ---EEEEecCCC----CCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEEeCCCCcEE---------EEEE--
Confidence               333444444    45678899999985555544 34  46667777776433322 211111         1222  


Q ss_pred             ecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcc--eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          364 SHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD--IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       364 ~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~--v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                         +++ .+++...+|.-+  ++|+.++...........  ...+++++..+ +.++    ...+...++.+++.
T Consensus       361 ---~~~-~l~s~s~dg~v~--vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~----dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          361 ---SDK-FLVSAAADGSIR--GWDANDYSRKFSYHHTNLSAITTFYVSDNIL-VSGS----ENQFNIYNLRSGKL  424 (464)
T ss_dssp             ---CSS-EEEEEETTSEEE--EEETTTCCEEEEEECTTCCCEEEEEECSSEE-EEEE----TTEEEEEETTTCCE
T ss_pred             ---cCC-EEEEEeCCCcEE--EEECCCCceeeeecCCCCccEEEEEeCCCEE-EEec----CCeEEEEECCCCcE
Confidence               334 445555566544  456666544322222222  22336666644 3443    25788899888863

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.95  E-value=0.0018  Score=63.49  Aligned_cols=208  Identities=13%  Similarity=0.061  Sum_probs=108.4

Q ss_pred             eEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCC--CCCCeeecceee-CCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIF-DPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       149 ~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~--~~~~~~~~d~~~-sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      ..+++++ .+++.+..++.|++++.++.  ..+.+....  ..........++ +++|+ |++.....       ...|+
T Consensus        34 ~v~~~~~g~l~v~~~~~~~i~~~d~~g~--~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~-------~~~i~  103 (286)
T 1q7f_A           34 GVAVNAQNDIIVADTNNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSP-------THQIQ  103 (286)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGG-------GCEEE
T ss_pred             eEEECCCCCEEEEECCCCEEEEECCCCc--EEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCC-------CCEEE
Confidence            3444544 67777666778999998743  333443210  000122345667 46664 44433210       15689


Q ss_pred             EEEcCCCCcccceecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          225 AIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      ++|.++..   .+.+... ........++|||+ |++....       ...|++++.++.    ....+......  ..+
T Consensus       104 ~~d~~g~~---~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~-------~~~i~~~~~~g~----~~~~~~~~~~~--~~p  166 (286)
T 1q7f_A          104 IYNQYGQF---VRKFGATILQHPRGVTVDNKGR-IIVVECK-------VMRVIIFDQNGN----VLHKFGCSKHL--EFP  166 (286)
T ss_dssp             EECTTSCE---EEEECTTTCSCEEEEEECTTSC-EEEEETT-------TTEEEEECTTSC----EEEEEECTTTC--SSE
T ss_pred             EECCCCcE---EEEecCccCCCceEEEEeCCCC-EEEEECC-------CCEEEEEcCCCC----EEEEeCCCCcc--CCc
Confidence            99965443   3334222 22344567999997 6555322       345888886533    22222211101  245


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      ..+.+++||++| +++.  +...|+++|+++.....+... .....|      ..+.+.   +++ .+|++...++ ..|
T Consensus       167 ~~i~~~~~g~l~-v~~~--~~~~i~~~~~~g~~~~~~~~~-g~~~~p------~~i~~d---~~G-~l~v~~~~~~-~~i  231 (286)
T 1q7f_A          167 NGVVVNDKQEIF-ISDN--RAHCVKVFNYEGQYLRQIGGE-GITNYP------IGVGIN---SNG-EILIADNHNN-FNL  231 (286)
T ss_dssp             EEEEECSSSEEE-EEEG--GGTEEEEEETTCCEEEEESCT-TTSCSE------EEEEEC---TTC-CEEEEECSSS-CEE
T ss_pred             EEEEECCCCCEE-EEEC--CCCEEEEEcCCCCEEEEEccC-CccCCC------cEEEEC---CCC-CEEEEeCCCC-EEE
Confidence            678899999754 4544  344688888866544444321 111111      223333   244 5666543221 368


Q ss_pred             EEEeCCCCceeeccc
Q 006979          384 GILDDFGHSLSLLDI  398 (623)
Q Consensus       384 ~~~d~~~~~~~~lt~  398 (623)
                      .++|.++..++.+..
T Consensus       232 ~~~~~~g~~~~~~~~  246 (286)
T 1q7f_A          232 TIFTQDGQLISALES  246 (286)
T ss_dssp             EEECTTSCEEEEEEE
T ss_pred             EEECCCCCEEEEEcc
Confidence            888887766666554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.93  E-value=0.0004  Score=70.34  Aligned_cols=114  Identities=7%  Similarity=-0.036  Sum_probs=77.4

Q ss_pred             CceEEEeCC----EEEEEeCCCCcEEEEeCCCCCCCc-eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCcee
Q 006979          147 GGAFRIFGD----TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT  221 (623)
Q Consensus       147 ~~~~~~s~d----~l~f~~~~~~~l~~~d~~~g~~~~-~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~  221 (623)
                      +.+.+++++    ..+++...++.|.++++.+..... ..+...    ........|+|+|++|+....+         .
T Consensus        42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------g  108 (368)
T 3mmy_A           42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH----TGPVLDVCWSDDGSKVFTASCD---------K  108 (368)
T ss_dssp             EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC----SSCEEEEEECTTSSEEEEEETT---------S
T ss_pred             eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc----cCCEEEEEECcCCCEEEEEcCC---------C
Confidence            456666665    677777788889999988620111 233322    3346678899999988876543         5


Q ss_pred             EEEEEEcCCCCcccceecccCCCcccceee--CCCCCEEEEEEecCCCCCCCceEEEEEEecCCC
Q 006979          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRM--DPRGERMAWIEWHHPNMPWDKAELWVGYISENG  284 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~~~~~~~~~p~w--SPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~  284 (623)
                      .|.++|+.+++   ...+......+....|  +|||+.|+....+        ..|.++|+..+.
T Consensus       109 ~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~  162 (368)
T 3mmy_A          109 TAKMWDLSSNQ---AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD--------KTLKFWDTRSSN  162 (368)
T ss_dssp             EEEEEETTTTE---EEEEEECSSCEEEEEEEECSSCEEEEEEETT--------SEEEEECSSCSS
T ss_pred             cEEEEEcCCCC---ceeeccccCceEEEEEEeCCCCCEEEEccCC--------CcEEEEECCCCc
Confidence            68899999887   4444444445566789  9999988766533        348888987763

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.89  E-value=0.00037  Score=80.81  Aligned_cols=157  Identities=10%  Similarity=-0.063  Sum_probs=96.6

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.+++++ .++.+...++.|++++..++  ........    ...+....|+| |++|+....+         ..|.+
T Consensus        20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~--~~~~~~~~----~~~V~~l~fsp-g~~L~S~s~D---------~~v~l   83 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQV--EVVIKLED----RSAIKEMRFVK-GIYLVVINAK---------DTVYV   83 (902)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEECSTTC--EEEEECSS----CCCEEEEEEET-TTEEEEEETT---------CEEEE
T ss_pred             cEEEEECCCCCEEEEEeCCCEEEEEeCCCc--EEEEEcCC----CCCEEEEEEcC-CCEEEEEECc---------CeEEE
Confidence            456677766 56666667888999998754  22221111    23466788999 8867665543         56888


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE---------EcCCC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC---------VAGFD  296 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~---------~~~~~  296 (623)
                      .|+.+++.  ...+. ....+...+|+|||++|+....+.        .|.++|++++.. ....+         ..+..
T Consensus        84 Wd~~~~~~--~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg--------~V~lwd~~~~~~-~~~~i~~~~~~~~~~~~h~  151 (902)
T 2oaj_A           84 LSLYSQKV--LTTVF-VPGKITSIDTDASLDWMLIGLQNG--------SMIVYDIDRDQL-SSFKLDNLQKSSFFPAARL  151 (902)
T ss_dssp             EETTTCSE--EEEEE-CSSCEEEEECCTTCSEEEEEETTS--------CEEEEETTTTEE-EEEEECCHHHHHTCSSSCC
T ss_pred             EECCCCcE--EEEEc-CCCCEEEEEECCCCCEEEEEcCCC--------cEEEEECCCCcc-ccceeccccccccccccCC
Confidence            99988762  23333 233456678999999988665332        378889876621 11111         11122


Q ss_pred             CCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEE
Q 006979          297 PTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA  339 (623)
Q Consensus       297 ~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~  339 (623)
                          ..+....|+|++. ++++... ++.  + .+|..+++...
T Consensus       152 ----~~V~sl~~sp~~~~~l~~g~~-dg~--v-lWd~~~~~~~~  187 (902)
T 2oaj_A          152 ----SPIVSIQWNPRDIGTVLISYE-YVT--L-TYSLVENEIKQ  187 (902)
T ss_dssp             ----CCCCEEEEETTEEEEEEEECS-SCE--E-EEETTTTEEEE
T ss_pred             ----CCeEEEEEccCCCCEEEEEeC-CCc--E-EEECCCCceEE
Confidence                4577889999754 5555443 343  5 67887776443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.88  E-value=0.00046  Score=65.93  Aligned_cols=200  Identities=10%  Similarity=-0.028  Sum_probs=111.2

Q ss_pred             EEeCCEEEEEeCCC--CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          151 RIFGDTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       151 ~~s~d~l~f~~~~~--~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      .++++.++++....  +.|.++|++++ ...+.+.-.    . ++..-.+.+++++|+...+..        +.++++|+
T Consensus        27 ~~~~~~LyestG~~g~S~v~~vD~~tg-kv~~~~~l~----~-~~fgeGi~~~~~~ly~ltw~~--------~~v~v~D~   92 (243)
T 3mbr_X           27 FYLRGHLYESTGETGRSSVRKVDLETG-RILQRAEVP----P-PYFGAGIVAWRDRLIQLTWRN--------HEGFVYDL   92 (243)
T ss_dssp             EEETTEEEEEECCTTSCEEEEEETTTC-CEEEEEECC----T-TCCEEEEEEETTEEEEEESSS--------SEEEEEET
T ss_pred             EEECCEEEEECCCCCCceEEEEECCCC-CEEEEEeCC----C-CcceeEEEEeCCEEEEEEeeC--------CEEEEEEC
Confidence            44567888887664  36999999988 222333321    1 111122455677887765432        78999999


Q ss_pred             CCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       229 ~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      ++.+.  +..+..+.+   +-..++||++|+ ++ +.      ..+|+++|.++...+  .++..+.++.-...+....|
T Consensus        93 ~tl~~--~~ti~~~~~---Gwglt~dg~~L~-vS-dg------s~~l~~iDp~t~~~~--~~I~V~~~g~~~~~lNeLe~  157 (243)
T 3mbr_X           93 ATLTP--RARFRYPGE---GWALTSDDSHLY-MS-DG------TAVIRKLDPDTLQQV--GSIKVTAGGRPLDNLNELEW  157 (243)
T ss_dssp             TTTEE--EEEEECSSC---CCEEEECSSCEE-EE-CS------SSEEEEECTTTCCEE--EEEECEETTEECCCEEEEEE
T ss_pred             CcCcE--EEEEeCCCC---ceEEeeCCCEEE-EE-CC------CCeEEEEeCCCCeEE--EEEEEccCCcccccceeeEE
Confidence            98763  334433322   234668998775 44 43      345999998776432  22222111010022345566


Q ss_pred             CCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccc---cccc--ccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---EFSR--PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~---~~~~--~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      . ||++| +...  ....|.++|+.+++.........   ....  ..-..-.+.+++.   |+++.||++.  .-+..|
T Consensus       158 ~-~G~ly-anvw--~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d---~~~~~lfVTG--K~wp~~  228 (243)
T 3mbr_X          158 V-NGELL-ANVW--LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD---AEHDRLFVTG--KRWPML  228 (243)
T ss_dssp             E-TTEEE-EEET--TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE---TTTTEEEEEE--TTCSEE
T ss_pred             e-CCEEE-EEEC--CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc---CCCCEEEEEC--CCCCcE
Confidence            5 77655 5544  23379999999998665443210   0000  0000112344554   3778888876  557788


Q ss_pred             EEEeC
Q 006979          384 GILDD  388 (623)
Q Consensus       384 ~~~d~  388 (623)
                      |.+.+
T Consensus       229 ~~v~~  233 (243)
T 3mbr_X          229 YEIRL  233 (243)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.87  E-value=0.00034  Score=70.18  Aligned_cols=252  Identities=10%  Similarity=-0.028  Sum_probs=124.6

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC---CEEEEEeCCC
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYKD  164 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~---d~l~f~~~~~  164 (623)
                      ..+..+.++| +..+. .-.   .++...||....+   +...+..      -.-|...+.+.++++   +.++++...|
T Consensus        14 ~~V~~v~~s~~g~~la-sgs---~D~~v~lwd~~~~---~~~~~~~------l~gH~~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRLA-TCS---SDRSVKIFDVRNG---GQILIAD------LRGHEGPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             CCEEEEEECGGGCEEE-EEE---TTTEEEEEEEETT---EEEEEEE------EECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred             CeEEEeeEcCCCCEEE-EEe---CCCeEEEEEecCC---CcEEEEE------EcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence            4456788888 55443 322   2466667755322   1111100      000122233445542   3566676678


Q ss_pred             CcEEEEeCCCCCCCce---ecCCCCCCCCeeecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc-cee
Q 006979          165 QRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE-PKV  238 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~---~Lt~~~~~~~~~~~d~~~sPd--G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~-~~~  238 (623)
                      +.|.++|+.++  ...   .+...    ........|+|+  |+.|+....+         ..+.++|+.++.... ...
T Consensus        81 ~~v~iWd~~~~--~~~~~~~~~~h----~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~~~~~~~~~~  145 (316)
T 3bg1_A           81 RKVIIWREENG--TWEKSHEHAGH----DSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTGEGQWEVKKI  145 (316)
T ss_dssp             SCEEEECCSSS--CCCEEEEECCC----SSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECSSSCEEECCB
T ss_pred             CEEEEEECCCC--cceEEEEccCC----CCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCCCCCcceeee
Confidence            88999999765  221   22221    234667889998  6666655443         346777776642100 111


Q ss_pred             cccCCCcccceeeCCCC-----------------CEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc
Q 006979          239 LVSGSDFYAFPRMDPRG-----------------ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (623)
Q Consensus       239 l~~~~~~~~~p~wSPDG-----------------~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~  301 (623)
                      +...........|+|++                 ++|+-...|        ..|.+.|+...+.......+.+..    .
T Consensus       146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D--------~~v~lWd~~~~~~~~~~~~l~~h~----~  213 (316)
T 3bg1_A          146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD--------NLIKLWKEEEDGQWKEEQKLEAHS----D  213 (316)
T ss_dssp             TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTT--------SBCCEEEECTTSCEEEEECCBCCS----S
T ss_pred             eccccCCcceEEEccccCCccccccccccCccccceEEEecCC--------CeEEEEEeCCCCccceeeecccCC----C
Confidence            12222234557799983                 444433222        235666765442111222233433    4


Q ss_pred             cCcCceeCCCC----cEEEEEeCCCCeeeEEEEecCC-Ce--EEEEeecccccccccccccCcceeEEeecCCCCEEEEE
Q 006979          302 SPTEPKWSSKG----ELFFVTDRKNGFWNLHKWIESN-NE--VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS  374 (623)
Q Consensus       302 ~~~~~~ws~DG----~l~~~~~~~~g~~~L~~~d~~~-~~--~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~  374 (623)
                      .+....|+|++    +++..... ++.-+||.++... ++  .+.+......+....|+            |+++.| ++
T Consensus       214 ~V~~v~~sp~~~~~~~~las~s~-D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s------------p~g~~l-as  279 (316)
T 3bg1_A          214 WVRDVAWAPSIGLPTSTIASCSQ-DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS------------ITANIL-AV  279 (316)
T ss_dssp             CEEEEECCCCSSCSCCEEEEEET-TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEEC------------TTTCCE-EE
T ss_pred             ceEEEEecCCCCCCCceEEEEcC-CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEc------------CCCCEE-EE
Confidence            56788999987    54544444 4665665443211 11  12222222222223333            266554 45


Q ss_pred             EEECCeEEEEEEeCCCCceee
Q 006979          375 YRQNGRSYLGILDDFGHSLSL  395 (623)
Q Consensus       375 ~~~~g~~~L~~~d~~~~~~~~  395 (623)
                      ...++.-+||..+.. ++++.
T Consensus       280 ~~~D~~v~lw~~~~~-g~~~~  299 (316)
T 3bg1_A          280 SGGDNKVTLWKESVD-GQWVC  299 (316)
T ss_dssp             EESSSCEEEEEECTT-SCEEE
T ss_pred             EcCCCeEEEEEECCC-CcEEE
Confidence            556788888877654 44443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.00076  Score=70.69  Aligned_cols=161  Identities=7%  Similarity=0.056  Sum_probs=92.3

Q ss_pred             CceEEEeC-C-EEEEEeCCCCcEEEEeCCC---CCCCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCce
Q 006979          147 GGAFRIFG-D-TVIFSNYKDQRLYKHSIDS---KDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST  220 (623)
Q Consensus       147 ~~~~~~s~-d-~l~f~~~~~~~l~~~d~~~---g~~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~  220 (623)
                      +.+.++++ + .++++...++.|.++|+.+   + ...+ .++..   .........|+|+++.|+....+         
T Consensus        66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d---------  132 (437)
T 3gre_A           66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-EVYSSSLTYD---CSSTVTQITMIPNFDAFAVSSKD---------  132 (437)
T ss_dssp             EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-CCCSCSEEEE---CSSCEEEEEECTTSSEEEEEETT---------
T ss_pred             eEEEEECCCCCCEEEEecCCceEEEeECcccccC-cccceeeecc---CCCCEEEEEEeCCCCEEEEEeCC---------
Confidence            44566666 4 5666777888899999865   3 1011 11100   02346678899999988876654         


Q ss_pred             eEEEEEEcC---CCCcc------cceecc--c--CCCcccce--eeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc
Q 006979          221 TEIVAIALN---GQNIQ------EPKVLV--S--GSDFYAFP--RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD  285 (623)
Q Consensus       221 ~~L~~idl~---~g~~~------~~~~l~--~--~~~~~~~p--~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~  285 (623)
                      ..|.++|++   .++..      .++.+.  .  ..+.....  .++|||+.|+....+        ..|.++|+..+. 
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~-  203 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL--------SRVIIFDIRTLE-  203 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT--------SEEEEEETTTCC-
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCe-
Confidence            346666663   33210      011111  1  11222222  278999988776533        358899998763 


Q ss_pred             eeeeEEEcC--CCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEE
Q 006979          286 VYKRVCVAG--FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       286 ~~~~~~~~~--~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~  338 (623)
                        ....+.+  ..    ..+....|+|||++++.... +|.  |..+|+.+++..
T Consensus       204 --~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~-dg~--i~iwd~~~~~~~  249 (437)
T 3gre_A          204 --RLQIIENSPRH----GAVSSICIDEECCVLILGTT-RGI--IDIWDIRFNVLI  249 (437)
T ss_dssp             --EEEEEECCGGG----CCEEEEEECTTSCEEEEEET-TSC--EEEEETTTTEEE
T ss_pred             --eeEEEccCCCC----CceEEEEECCCCCEEEEEcC-CCe--EEEEEcCCccEE
Confidence              3333443  22    45678899999986655554 344  556677666543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.0029  Score=66.21  Aligned_cols=212  Identities=8%  Similarity=-0.054  Sum_probs=114.3

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ...+..+.|+| ++.++..-..   +|...+|.......+....  .    ....-|...+.+..++++ ..+++...++
T Consensus        63 ~~~V~~~~~s~~~~~~l~s~s~---dg~v~vwd~~~~~~~~~~~--~----~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  133 (437)
T 3gre_A           63 PNSITSSAVSPGETPYLITGSD---QGVIKIWNLKEIIVGEVYS--S----SLTYDCSSTVTQITMIPNFDAFAVSSKDG  133 (437)
T ss_dssp             TSCEEEEEEECSSSCEEEEEET---TSEEEEEEHHHHHTTCCCS--C----SEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCceEEEEECCCCCCEEEEecC---CceEEEeECcccccCcccc--e----eeeccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            35567888998 6666555433   5777778654310001000  0    000012233456666665 5566666788


Q ss_pred             cEEEEeCC---CCCCCceecCCC---------CCCCCeeec--ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979          166 RLYKHSID---SKDSSPLPITPD---------YGEPLVSYA--DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (623)
Q Consensus       166 ~l~~~d~~---~g~~~~~~Lt~~---------~~~~~~~~~--d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g  231 (623)
                      .|.++|+.   .+  ........         .........  ...++|+++.++....+         ..|.++|+.++
T Consensus       134 ~i~vwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~  202 (437)
T 3gre_A          134 QIIVLKVNHYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL---------SRVIIFDIRTL  202 (437)
T ss_dssp             EEEEEEEEEEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT---------SEEEEEETTTC
T ss_pred             EEEEEEeccccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCC
Confidence            88888873   33  21111110         000001111  12266888877766543         56999999887


Q ss_pred             Ccccceeccc--CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEc-CCCCCccccCcCc--
Q 006979          232 NIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-GFDPTIVESPTEP--  306 (623)
Q Consensus       232 ~~~~~~~l~~--~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~--  306 (623)
                      +.  ...+..  ....+....|+|||++|+....+.        .|.++|+..+.   ....+. ...    ..+...  
T Consensus       203 ~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--------~i~iwd~~~~~---~~~~~~~~~~----~~v~~~~~  265 (437)
T 3gre_A          203 ER--LQIIENSPRHGAVSSICIDEECCVLILGTTRG--------IIDIWDIRFNV---LIRSWSFGDH----APITHVEV  265 (437)
T ss_dssp             CE--EEEEECCGGGCCEEEEEECTTSCEEEEEETTS--------CEEEEETTTTE---EEEEEBCTTC----EEEEEEEE
T ss_pred             ee--eEEEccCCCCCceEEEEECCCCCEEEEEcCCC--------eEEEEEcCCcc---EEEEEecCCC----CceEEEEe
Confidence            62  233333  234566678999999888665332        38888988752   222222 322    334455  


Q ss_pred             --eeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEE
Q 006979          307 --KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA  339 (623)
Q Consensus       307 --~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~  339 (623)
                        .|++||++++.... ++  .|..+|..+++...
T Consensus       266 ~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~  297 (437)
T 3gre_A          266 CQFYGKNSVIVVGGSS-KT--FLTIWNFVKGHCQY  297 (437)
T ss_dssp             CTTTCTTEEEEEEEST-TE--EEEEEETTTTEEEE
T ss_pred             ccccCCCccEEEEEcC-CC--cEEEEEcCCCcEEE
Confidence              55567765555443 33  56677877776443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.00026  Score=80.50  Aligned_cols=205  Identities=9%  Similarity=0.022  Sum_probs=117.4

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC---CEEEEEeCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYK  163 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~---d~l~f~~~~  163 (623)
                      ...+..+.|+| ++.++-- .   .+|...+|.....++ .....+..        |...+.+..+++   +..+++...
T Consensus         9 ~~~V~~l~~s~dg~~latg-~---~dg~I~vwd~~~~~~-~~~~~l~~--------h~~~V~~l~~s~~~~~~~l~s~s~   75 (753)
T 3jro_A            9 NELIHDAVLDYYGKRLATC-S---SDKTIKIFEVEGETH-KLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSY   75 (753)
T ss_dssp             CCCEEEECCCSSSCCEEEE-E---TTTEEEEEEEETTEE-EEEEEECC--------CSSCEEEEEECCTTSCSEEEEEET
T ss_pred             cceeEEEEECCCCCeEEEE-E---CCCcEEEEecCCCCC-ccceeccC--------CcCceEEEEecCCCCCCEEEEEeC
Confidence            34456777888 5544432 2   247777776542211 11111111        122234455543   345666667


Q ss_pred             CCcEEEEeCCCCCCCc---eecCCCCCCCCeeecceeeCCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccee
Q 006979          164 DQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV  238 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~---~~Lt~~~~~~~~~~~d~~~sPd--G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~  238 (623)
                      ++.|.++|+.++  ..   ..+...    ........|+|+  |+.++....+         +.+.++|+.++.......
T Consensus        76 Dg~I~vwd~~~~--~~~~~~~~~~h----~~~V~~v~~sp~~~~~~l~sgs~d---------g~I~vwdl~~~~~~~~~~  140 (753)
T 3jro_A           76 DGKVLIWKEENG--RWSQIAVHAVH----SASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKENGTTSPII  140 (753)
T ss_dssp             TSCEEEEEEETT--EEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCSSSCCCCEE
T ss_pred             CCeEEEEECCCC--cccccccccCC----CCCeEEEEECCCCCCCEEEEEeCC---------CcEEEEEeecCCCcceeE
Confidence            888999998865  31   222221    345667889999  8888776553         568888988763211233


Q ss_pred             cccCCCcccceeeCC-------------CCCEEEEEEecCCCCCCCceEEEEEEecCCCce-eeeEEEcCCCCCccccCc
Q 006979          239 LVSGSDFYAFPRMDP-------------RGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       239 l~~~~~~~~~p~wSP-------------DG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~  304 (623)
                      +......+....|+|             ||+.|+....+.        .|.++|+..+... .....+.+..    ..+.
T Consensus       141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg--------~I~iwd~~~~~~~~~~~~~~~~h~----~~V~  208 (753)
T 3jro_A          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN--------LVKIWKYNSDAQTYVLESTLEGHS----DWVR  208 (753)
T ss_dssp             EECCSSCEEEEEECCCC---------CGGGCCEEEEETTS--------CEEEEEEETTTTEEEEEEEECCCS----SCEE
T ss_pred             eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC--------eEEEEeccCCcccceeeeeecCCC----CcEE
Confidence            333444556678999             688887665332        3888888766321 1222334444    5677


Q ss_pred             CceeCCC---CcEEEEEeCCCCeeeEEEEecCCC
Q 006979          305 EPKWSSK---GELFFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       305 ~~~ws~D---G~l~~~~~~~~g~~~L~~~d~~~~  335 (623)
                      .+.|+|+   |++++.... +|.-.+|  |..++
T Consensus       209 ~l~~sp~~~~~~~l~s~s~-Dg~I~iw--d~~~~  239 (753)
T 3jro_A          209 DVAWSPTVLLRSYLASVSQ-DRTCIIW--TQDNE  239 (753)
T ss_dssp             EEEECCCCSSSEEEEEEES-SSCEEEE--EESSS
T ss_pred             EEEeccCCCCCCEEEEEec-CCEEEEe--cCCCC
Confidence            8999999   775555554 4554444  55444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.83  E-value=0.0039  Score=61.10  Aligned_cols=229  Identities=11%  Similarity=0.022  Sum_probs=121.5

Q ss_pred             eEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       149 ~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      +.+.+++ .+++....++.|++++.+ +  ....+...  ..........++|+|+.++. ....        ..|+++|
T Consensus        19 ~i~~d~~g~l~v~~~~~~~v~~~d~~-~--~~~~~~~~--~~~~~~~~i~~~~~g~l~v~-~~~~--------~~i~~~~   84 (299)
T 2z2n_A           19 GITVSDKGKVWITQHKANMISCINLD-G--KITEYPLP--TPDAKVMCLTISSDGEVWFT-ENAA--------NKIGRIT   84 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-C--CEEEEECS--STTCCEEEEEECTTSCEEEE-ETTT--------TEEEEEC
T ss_pred             ceEECCCCCEEEEecCCCcEEEEcCC-C--CeEEecCC--cccCceeeEEECCCCCEEEe-CCCC--------CeEEEEC
Confidence            3444444 677776556779999987 5  44443311  01233456778999974433 2211        5699999


Q ss_pred             cCCCCcccceecc--cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          228 LNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       228 l~~g~~~~~~~l~--~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      .+ ++   .+.+.  ..........++|||+ |++....       ...|++++. .+.   ......... .  ..+..
T Consensus        85 ~~-g~---~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~-------~~~i~~~d~-~g~---~~~~~~~~~-~--~~~~~  145 (299)
T 2z2n_A           85 KK-GI---IKEYTLPNPDSAPYGITEGPNGD-IWFTEMN-------GNRIGRITD-DGK---IREYELPNK-G--SYPSF  145 (299)
T ss_dssp             TT-SC---EEEEECSSTTCCEEEEEECTTSC-EEEEETT-------TTEEEEECT-TCC---EEEEECSST-T--CCEEE
T ss_pred             CC-Cc---EEEEeCCCcCCCceeeEECCCCC-EEEEecC-------CceEEEECC-CCC---EEEecCCCC-C--CCCce
Confidence            87 43   33332  1223344567899986 5544322       335888887 331   222221111 1  34567


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~  385 (623)
                      ..+++||++++...   +...|+++|+ +++.+.+... .....      ...+.+.   ++ +.+++...  +...|++
T Consensus       146 i~~~~~g~l~v~~~---~~~~i~~~~~-~g~~~~~~~~-~~~~~------~~~i~~~---~~-g~l~v~~~--~~~~i~~  208 (299)
T 2z2n_A          146 ITLGSDNALWFTEN---QNNAIGRITE-SGDITEFKIP-TPASG------PVGITKG---ND-DALWFVEI--IGNKIGR  208 (299)
T ss_dssp             EEECTTSCEEEEET---TTTEEEEECT-TCCEEEEECS-STTCC------EEEEEEC---TT-SSEEEEET--TTTEEEE
T ss_pred             EEEcCCCCEEEEeC---CCCEEEEEcC-CCcEEEeeCC-CCCCc------ceeEEEC---CC-CCEEEEcc--CCceEEE
Confidence            78889997665443   2346889998 6665544211 01111      1123332   24 44666542  3346888


Q ss_pred             EeCCCCceeecccC--CcceEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 006979          386 LDDFGHSLSLLDIP--FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLD  432 (623)
Q Consensus       386 ~d~~~~~~~~lt~~--~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~  432 (623)
                      +|. +++.+.+..+  ......+  +++ +.+++...   ....|++++.+
T Consensus       209 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~---~~~~i~~~d~~  254 (299)
T 2z2n_A          209 ITT-SGEITEFKIPTPNARPHAITAGAG-IDLWFTEW---GANKIGRLTSN  254 (299)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECST-TCEEEEET---TTTEEEEEETT
T ss_pred             ECC-CCcEEEEECCCCCCCceeEEECCC-CCEEEecc---CCceEEEECCC
Confidence            998 6666554332  2234444  444 44555432   23568888873

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.81  E-value=0.0058  Score=59.00  Aligned_cols=206  Identities=11%  Similarity=0.099  Sum_probs=112.6

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCC
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPW  270 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~  270 (623)
                      .....+|+|+++.|+++.+..        ..|+.+|++ +++  .+.+. .+..-+.+.++.+||+ + ++...+     
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~--------~~I~~ld~~-g~v--~~~i~l~g~~D~EGIa~~~~g~-~-~vs~E~-----   89 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKP--------AAIVEMTTN-GDL--IRTIPLDFVKDLETIEYIGDNQ-F-VISDER-----   89 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETT--------EEEEEEETT-CCE--EEEEECSSCSSEEEEEECSTTE-E-EEEETT-----
T ss_pred             CcceeEEeCCCCEEEEEECCC--------CeEEEEeCC-CCE--EEEEecCCCCChHHeEEeCCCE-E-EEEECC-----
Confidence            466788999999888877653        779999998 553  34442 2222244567888885 3 344233     


Q ss_pred             CceEEEEEEecCCCceeeeEEEc-C---CCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEe--cCCCeEEEEeec
Q 006979          271 DKAELWVGYISENGDVYKRVCVA-G---FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSL  343 (623)
Q Consensus       271 ~~~~L~v~d~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d--~~~~~~~~l~~~  343 (623)
                       ..+|++++++..+.+....... .   ....  ......+|+|+++ ||....+  +...||.++  +.+...+.+...
T Consensus        90 -~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N--~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A           90 -DYAIYVISLTPNSEVKILKKIKIPLQESPTN--CGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             -TTEEEEEEECTTCCEEEEEEEECCCSSCCCS--SCCEEEEEETTTTEEEEEEES--SSEEEEEEESTTCSSCCEEEECH
T ss_pred             -CCcEEEEEcCCCCeeeeeeeecccccccccc--CCcceEEEeCCCCEEEEEECc--CCceEEEEcccccCCceeeecch
Confidence             3468999887765321111111 1   1111  4457889999987 6665554  556899887  222222222110


Q ss_pred             ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCc---------ceEee--eecCCE
Q 006979          344 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT---------DIDNI--TLGNDC  412 (623)
Q Consensus       344 ~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~---------~v~~~--~~~~~~  412 (623)
                        .+....-....+...+.+   ..+++|+.+.  ....|..+|.++..+..+....+         .-.++  ++++ .
T Consensus       165 --~~~~~~~~~d~S~l~~dp---~tg~lliLS~--~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~  236 (255)
T 3qqz_A          165 --ALQRQFTLDDVSGAEFNQ---QKNTLLVLSH--ESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-N  236 (255)
T ss_dssp             --HHHHTCCSSCCCEEEEET---TTTEEEEEET--TTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-C
T ss_pred             --hhccccccCCceeEEEcC---CCCeEEEEEC--CCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCC-C
Confidence              000000011224444443   6677888774  34568888888764444433211         12334  4444 4


Q ss_pred             EEEEEecCCCCCeEEEEEcC
Q 006979          413 LFVEGASGVEPSSVAKVTLD  432 (623)
Q Consensus       413 ~~~~~~s~~~~~~ly~~~l~  432 (623)
                      +|++ +.   |..+|++...
T Consensus       237 lyIv-sE---~n~~y~f~~~  252 (255)
T 3qqz_A          237 IYIV-SE---PNRFYRFTPQ  252 (255)
T ss_dssp             EEEE-ET---TTEEEEEEC-
T ss_pred             EEEE-cC---CceEEEEEec
Confidence            6655 32   3478887644

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.79  E-value=0.0011  Score=67.72  Aligned_cols=77  Identities=12%  Similarity=0.089  Sum_probs=48.0

Q ss_pred             cccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEc-C-CCCCccccCcCceeCCCCcEEE
Q 006979          239 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-G-FDPTIVESPTEPKWSSKGELFF  316 (623)
Q Consensus       239 l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ws~DG~l~~  316 (623)
                      +....+.+...+|||||++|+-...|       +..|.+.|+.++.   ....+. + ..    ..+....|+|||++++
T Consensus       191 ~~~h~~~v~~~~~s~~g~~l~s~s~d-------~~~v~iwd~~~~~---~~~~~~~g~h~----~~v~~~~~s~~~~~l~  256 (355)
T 3vu4_A          191 IKAHTNPIKMVRLNRKSDMVATCSQD-------GTIIRVFKTEDGV---LVREFRRGLDR----ADVVDMKWSTDGSKLA  256 (355)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETT-------CSEEEEEETTTCC---EEEEEECTTCC----SCEEEEEECTTSCEEE
T ss_pred             EEccCCceEEEEECCCCCEEEEEeCC-------CCEEEEEECCCCc---EEEEEEcCCCC----CcEEEEEECCCCCEEE
Confidence            33333445667899999988866533       2227777888763   233343 3 33    4677899999999555


Q ss_pred             EEeCCCCeeeEEEE
Q 006979          317 VTDRKNGFWNLHKW  330 (623)
Q Consensus       317 ~~~~~~g~~~L~~~  330 (623)
                      .... ++.-+||.+
T Consensus       257 s~s~-d~~v~iw~~  269 (355)
T 3vu4_A          257 VVSD-KWTLHVFEI  269 (355)
T ss_dssp             EEET-TCEEEEEES
T ss_pred             EEEC-CCEEEEEEc
Confidence            5444 455555543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.002  Score=63.57  Aligned_cols=225  Identities=12%  Similarity=0.060  Sum_probs=118.2

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      ++..+++...++.|.++|+.++ .....+...    ........|+|+++.|+....+         ..+.++++.....
T Consensus        28 ~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d---------g~i~~~~~~~~~~   93 (313)
T 3odt_A           28 DDSKVASVSRDGTVRLWSKDDQ-WLGTVVYTG----QGFLNSVCYDSEKELLLFGGKD---------TMINGVPLFATSG   93 (313)
T ss_dssp             ETTEEEEEETTSEEEEEEESSS-EEEEEEEEC----SSCEEEEEEETTTTEEEEEETT---------SCEEEEETTCCTT
T ss_pred             CCCEEEEEEcCCcEEEEECCCC-EEEEEeecC----CccEEEEEECCCCCEEEEecCC---------CeEEEEEeeecCC
Confidence            3344556667888999998765 122223222    3346678899999988876654         3467777655421


Q ss_pred             -ccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC-C
Q 006979          234 -QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-K  311 (623)
Q Consensus       234 -~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~-D  311 (623)
                       .....+...........|  |++.|+....+        ..|.++|  .+   .....+....    ..+....|.+ +
T Consensus        94 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d--------~~i~~~d--~~---~~~~~~~~~~----~~v~~~~~~~~~  154 (313)
T 3odt_A           94 EDPLYTLIGHQGNVCSLSF--QDGVVISGSWD--------KTAKVWK--EG---SLVYNLQAHN----ASVWDAKVVSFS  154 (313)
T ss_dssp             SCC-CEECCCSSCEEEEEE--ETTEEEEEETT--------SEEEEEE--TT---EEEEEEECCS----SCEEEEEEEETT
T ss_pred             CCcccchhhcccCEEEEEe--cCCEEEEEeCC--------CCEEEEc--CC---cEEEecccCC----CceeEEEEccCC
Confidence             112233323333444456  77877766532        3477777  22   1333344433    4556778887 7


Q ss_pred             CcEEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC
Q 006979          312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (623)
Q Consensus       312 G~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~  390 (623)
                      +++++.... ++.  |..+|. ......+.. ....+.         .+.+.+   ++.  +++...+|.  |.++|+.+
T Consensus       155 ~~~l~~~~~-d~~--i~i~d~-~~~~~~~~~~~~~~i~---------~~~~~~---~~~--~~~~~~dg~--i~i~d~~~  214 (313)
T 3odt_A          155 ENKFLTASA-DKT--IKLWQN-DKVIKTFSGIHNDVVR---------HLAVVD---DGH--FISCSNDGL--IKLVDMHT  214 (313)
T ss_dssp             TTEEEEEET-TSC--EEEEET-TEEEEEECSSCSSCEE---------EEEEEE---TTE--EEEEETTSE--EEEEETTT
T ss_pred             CCEEEEEEC-CCC--EEEEec-CceEEEEeccCcccEE---------EEEEcC---CCe--EEEccCCCe--EEEEECCc
Confidence            775555554 454  444452 222222222 222222         233332   444  445545554  55667776


Q ss_pred             Cce-eecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          391 HSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       391 ~~~-~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ++. ..+......+..+  ++++ ++ +++..   ...|+.+++.+++.
T Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~~-~l-~~~~~---dg~v~iwd~~~~~~  258 (313)
T 3odt_A          215 GDVLRTYEGHESFVYCIKLLPNG-DI-VSCGE---DRTVRIWSKENGSL  258 (313)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTS-CE-EEEET---TSEEEEECTTTCCE
T ss_pred             hhhhhhhhcCCceEEEEEEecCC-CE-EEEec---CCEEEEEECCCCce
Confidence            654 3444344445555  4444 33 33332   25688888777653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.79  E-value=0.0013  Score=70.77  Aligned_cols=160  Identities=10%  Similarity=-0.020  Sum_probs=90.6

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCc-e--ecCCCCCCCCeeecceee-C-CCCCEEEEEEeccC---------CCCCCcee
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSP-L--PITPDYGEPLVSYADGIF-D-PRFNRYVTVREDRR---------QDALNSTT  221 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~-~--~Lt~~~~~~~~~~~d~~~-s-PdG~~l~~v~~~~~---------~~~~~~~~  221 (623)
                      .+++.+..+++|.++|+++.  +. +  .|..+     .....+.+ + |+++++++..+...         ..+++..+
T Consensus       103 ~lfVnd~~~~rVavIdl~t~--~~~~ii~ip~g-----~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A          103 FLFMNDKANTRVARVRCDVM--KCDAILEIPNA-----KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEETTTTEEEEEETTTT--EEEEEEECSSC-----CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             EEEEEcCCCCEEEEEECCCc--eEeeEEeCCCC-----CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence            45555555667999999976  32 2  33322     11223444 5 99999877654221         01234577


Q ss_pred             EEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCC--------CCceE-------------------
Q 006979          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP--------WDKAE-------------------  274 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p--------~~~~~-------------------  274 (623)
                      .+-++|.++.++  ..++.-+. .......||||++++..+.+. ++-        .....                   
T Consensus       176 ~vtvID~~t~~v--~~qI~Vgg-~pd~~~~spdGk~~~vt~~~s-e~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          176 VFTAVDADKWEV--AWQVLVSG-NLDNCDADYEGKWAFSTSYNS-EKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEEETTTTEE--EEEEEESS-CCCCEEECSSSSEEEEEESCT-TCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             eEEEEECCCCeE--EEEEEeCC-CccceEECCCCCEEEEEecCc-ccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            899999998763  23333222 234467999999887776443 210        00112                   


Q ss_pred             ----EEEEEecC--CCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCC
Q 006979          275 ----LWVGYISE--NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       275 ----L~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~  335 (623)
                          +-++|...  +..  ....+.-.     ..+....++|||+.+++++.  +..++..+|.++.
T Consensus       252 ~i~~V~VID~~~~~~~~--~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~--~s~~VsVid~~~~  309 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSL--FTRYIPIA-----NNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRF  309 (595)
T ss_dssp             EETTEEEEECSGGGCCS--SEEEEEEE-----SSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGH
T ss_pred             EECcEEEEeCcccCCce--eEEEEecC-----CCceEEEEcCCCCEEEEeCC--CCCeEEEEECccc
Confidence                34444443  110  01111111     23567899999998888876  5556777887643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.78  E-value=0.0033  Score=61.59  Aligned_cols=198  Identities=12%  Similarity=0.044  Sum_probs=105.9

Q ss_pred             ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCccc-CCCCCccceeeeecCCceEEEeC-CEEEEEeCCCCcE
Q 006979           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDI-TPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQRL  167 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l-~p~~~~~r~~~~~~g~~~~~~s~-d~l~f~~~~~~~l  167 (623)
                      .+..+.+++++.+|+....     ...|++++.. + +.... .+...        ......+.++ +.+++.....+.|
T Consensus        63 ~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g-~~~~~~~~~~~--------~~~~~i~~~~~g~l~v~~~~~~~i  127 (300)
T 2qc5_A           63 KVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-G-GFTEYPLPQPD--------SGPYGITEGLNGDIWFTQLNGDRI  127 (300)
T ss_dssp             CEEEEEECTTSCEEEEETT-----TTEEEEECTT-S-CEEEEECSSTT--------CCEEEEEECSTTCEEEEETTTTEE
T ss_pred             cceeEEECCCCCEEEEecC-----CCeEEEECCC-C-CeEEecCCCCC--------CCCccceECCCCCEEEEccCCCeE
Confidence            4556777765667766522     2236666655 2 33222 22110        0122334443 3677777666789


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc--cCCCc
Q 006979          168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSDF  245 (623)
Q Consensus       168 ~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~--~~~~~  245 (623)
                      ++++.+ +  ....+...  ..........++|+|+ |++.....        ..|+++|. +++   ...+.  .....
T Consensus       128 ~~~~~~-g--~~~~~~~~--~~~~~~~~i~~d~~g~-l~v~~~~~--------~~i~~~~~-~g~---~~~~~~~~~~~~  189 (300)
T 2qc5_A          128 GKLTAD-G--TIYEYDLP--NKGSYPAFITLGSDNA-LWFTENQN--------NSIGRITN-TGK---LEEYPLPTNAAA  189 (300)
T ss_dssp             EEECTT-S--CEEEEECS--STTCCEEEEEECTTSS-EEEEETTT--------TEEEEECT-TCC---EEEEECSSTTCC
T ss_pred             EEECCC-C--CEEEccCC--CCCCCceeEEECCCCC-EEEEecCC--------CeEEEECC-CCc---EEEeeCCCCCCC
Confidence            999987 5  34333211  0123345677899998 44433211        56999998 454   33332  22223


Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE-EcCCCCCccccCcCceeCCCCcEEEEEeCCCCe
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF  324 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~  324 (623)
                      .....++|||+ |++....       ...|++++.++.    .... +....    ..+..+..+++|++++ ++.  +.
T Consensus       190 ~~~i~~d~~g~-l~v~~~~-------~~~i~~~~~~g~----~~~~~~~~~~----~~~~~i~~d~~g~l~v-~~~--~~  250 (300)
T 2qc5_A          190 PVGITSGNDGA-LWFVEIM-------GNKIGRITTTGE----ISEYDIPTPN----ARPHAITAGKNSEIWF-TEW--GA  250 (300)
T ss_dssp             EEEEEECTTSS-EEEEETT-------TTEEEEECTTCC----EEEEECSSTT----CCEEEEEECSTTCEEE-EET--TT
T ss_pred             cceEEECCCCC-EEEEccC-------CCEEEEEcCCCc----EEEEECCCCC----CCceEEEECCCCCEEE-ecc--CC
Confidence            44567899986 6555422       335888887322    1222 22111    3455678899997554 443  33


Q ss_pred             eeEEEEecCCCeEEEE
Q 006979          325 WNLHKWIESNNEVLAI  340 (623)
Q Consensus       325 ~~L~~~d~~~~~~~~l  340 (623)
                      ..|+++|+ +++.+.+
T Consensus       251 ~~i~~~~~-~g~~~~~  265 (300)
T 2qc5_A          251 NQIGRITN-DNTIQEY  265 (300)
T ss_dssp             TEEEEECT-TSCEEEE
T ss_pred             CeEEEECC-CCcEEEE
Confidence            46888988 4554443

>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A

Probab=97.76  E-value=0.00011  Score=74.43  Aligned_cols=100  Identities=13%  Similarity=0.172  Sum_probs=66.3

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHH-HHHHHhCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~-~~~l~~~~~~d~~  574 (623)
                      |.|+++||...  ....|...+..+ ..+|.|+.+|++|.+.   ...  ..     ..++++.+. ++.+.+..  ..+
T Consensus       102 ~~l~~lhg~~~--~~~~~~~l~~~L-~~~~~v~~~d~~g~~~---~~~--~~-----~~~~~~a~~~~~~i~~~~--~~~  166 (329)
T 3tej_A          102 PTLFCFHPASG--FAWQFSVLSRYL-DPQWSIIGIQSPRPNG---PMQ--TA-----ANLDEVCEAHLATLLEQQ--PHG  166 (329)
T ss_dssp             CEEEEECCTTS--CCGGGGGGGGTS-CTTCEEEEECCCTTTS---HHH--HC-----SSHHHHHHHHHHHHHHHC--SSS
T ss_pred             CcEEEEeCCcc--cchHHHHHHHhc-CCCCeEEEeeCCCCCC---CCC--CC-----CCHHHHHHHHHHHHHHhC--CCC
Confidence            67888999843  334555666666 5689999999998533   211  11     123333332 33333321  135


Q ss_pred             ceEEEEcChHHHHHHHHh-c---CCCceeEEEecccCCCH
Q 006979          575 RLCITGGSAGGYTTLAAL-A---FRDTFKAGASLYGVSIP  610 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~---~~~~f~a~v~~~g~~d~  610 (623)
                      ++.++|||+||.++..++ .   +++.++..|...+....
T Consensus       167 ~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~  206 (329)
T 3tej_A          167 PYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPE  206 (329)
T ss_dssp             CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTH
T ss_pred             CEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCC
Confidence            899999999999999888 6   89999999988776543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.75  E-value=0.007  Score=60.88  Aligned_cols=205  Identities=10%  Similarity=0.040  Sum_probs=104.5

Q ss_pred             eEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCC----C-CCCCeeecceeeCC-CCCEEEEEEeccCCCCCCcee
Q 006979          149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPD----Y-GEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTT  221 (623)
Q Consensus       149 ~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~----~-~~~~~~~~d~~~sP-dG~~l~~v~~~~~~~~~~~~~  221 (623)
                      ..+++++ .+++++..+++|++++.++.......+...    . ........+.+++| +|+ |+++....       ..
T Consensus        95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~-------~~  166 (329)
T 3fvz_A           95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYC-------NS  166 (329)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSS-------CC
T ss_pred             EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCC-------CC
Confidence            3455544 688888777889999986430022333210    0 01112344678999 665 44433111       16


Q ss_pred             EEEEEEcCCCCcccceeccc-CC---------CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE
Q 006979          222 EIVAIALNGQNIQEPKVLVS-GS---------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC  291 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~~-~~---------~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~  291 (623)
                      .|++++.++..   ...+.. +.         ......+++||+..|++....       ..+|.+++.+++.   ....
T Consensus       167 ~I~~~~~~g~~---~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-------~~~I~~~~~~~G~---~~~~  233 (329)
T 3fvz_A          167 RIVQFSPSGKF---VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-------NGRIQCFKTDTKE---FVRE  233 (329)
T ss_dssp             EEEEECTTSCE---EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-------TTEEEEEETTTCC---EEEE
T ss_pred             eEEEEcCCCCE---EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-------CCEEEEEECCCCc---EEEE
Confidence            79999966543   333321 11         113445799997778766532       4468899987542   2223


Q ss_pred             EcCCCCCccccCcCceeCCCCcEEEEEeCC-----CCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeec
Q 006979          292 VAGFDPTIVESPTEPKWSSKGELFFVTDRK-----NGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSH  365 (623)
Q Consensus       292 ~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~-----~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s  365 (623)
                      +......  ..+....++| | +++..+..     .+...++.++..+++...... ....+..|      ..+.+.   
T Consensus       234 ~~~~~~~--~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p------~~ia~~---  300 (329)
T 3fvz_A          234 IKHASFG--RNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMP------HDIVAS---  300 (329)
T ss_dssp             ECCTTTT--TCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSE------EEEEEC---
T ss_pred             EeccccC--CCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCe------eEEEEC---
Confidence            3221101  2334566777 4 33333320     123478888887776554432 11112111      233333   


Q ss_pred             CCCCEEEEEEEECCeEEEEEEeCCC
Q 006979          366 GEKNLIACSYRQNGRSYLGILDDFG  390 (623)
Q Consensus       366 ~~~~~l~~~~~~~g~~~L~~~d~~~  390 (623)
                      ++| .+|++...++  +|.++++++
T Consensus       301 ~dG-~lyvad~~~~--~I~~~~~~~  322 (329)
T 3fvz_A          301 EDG-TVYIGDAHTN--TVWKFTLTE  322 (329)
T ss_dssp             TTS-EEEEEESSSC--CEEEEEEEE
T ss_pred             CCC-CEEEEECCCC--EEEEEeCCc
Confidence            254 6776654333  555555543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.74  E-value=0.0022  Score=67.49  Aligned_cols=158  Identities=4%  Similarity=-0.010  Sum_probs=92.8

Q ss_pred             eEEEeC---CEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          149 AFRIFG---DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       149 ~~~~s~---d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      ..++++   +.||+++.. ++|+++|++++  ..+.+...    ..+-..++++++|++|++.......    ....++.
T Consensus       141 ~lavdp~~~g~Lyv~d~~-~~I~~id~~~~--~v~~~~~~----~~~P~~ia~d~~G~~lyvad~~~~~----~~~~v~~  209 (430)
T 3tc9_A          141 WLSFDPKNHNHLYLVGEQ-HPTRLIDFEKE--YVSTVYSG----LSKVRTICWTHEADSMIITNDQNNN----DRPNNYI  209 (430)
T ss_dssp             EEEEETTEEEEEEEEEBT-EEEEEEETTTT--EEEEEECC----CSCEEEEEECTTSSEEEEEECCSCT----TSEEEEE
T ss_pred             EEEECCCCCCeEEEEeCC-CcEEEEECCCC--EEEEEecC----CCCcceEEEeCCCCEEEEEeCCCCc----ccceEEE
Confidence            345553   367777655 77999999875  45554432    3345568899999977665432211    1245777


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      ++.+++- ...+.+.. ........++|++.+|++..+.       ..+|++++.+++.   ...+..-.. .  .....
T Consensus       210 ~~~~g~~-~~~~~l~~-~~~p~giavdp~~g~lyv~d~~-------~~~V~~~~~~~~~---~~~~~~~~~-~--~~P~g  274 (430)
T 3tc9_A          210 LTRESGF-KVITELTK-GQNCNGAETHPINGELYFNSWN-------AGQVFRYDFTTQE---TTPLFTIQD-S--GWEFH  274 (430)
T ss_dssp             EEGGGTS-CSEEEEEE-CSSCCCEEECTTTCCEEEEETT-------TTEEEEEETTTTE---EEEEEECSS-S--SCCEE
T ss_pred             EeCCCce-eeeeeecc-CCCceEEEEeCCCCEEEEEECC-------CCEEEEEECCCCc---EEEEEEcCC-C--Cccee
Confidence            7776543 11123332 2233456799955568877643       3469999987651   112222111 1  24567


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCC
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~  334 (623)
                      ++|+|||+.+|+++.  ...+|++++.++
T Consensus       275 ia~~pdG~~lyv~d~--~~~~I~~~~~d~  301 (430)
T 3tc9_A          275 IQFHPSGNYAYIVVV--NQHYILRSDYDW  301 (430)
T ss_dssp             EEECTTSSEEEEEET--TTTEEEEEEEET
T ss_pred             EEEcCCCCEEEEEEC--CCCEEEEEeCCc
Confidence            899999995555665  445677776654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.72  E-value=0.00062  Score=65.69  Aligned_cols=195  Identities=9%  Similarity=-0.015  Sum_probs=113.2

Q ss_pred             CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEEEe
Q 006979           92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS  171 (623)
Q Consensus        92 ~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~~d  171 (623)
                      .++.++ ++.+|.....   .|+  |...+..+|...+.+++..         +-+...++.+++|+.....++.++++|
T Consensus        58 qGL~~~-~~~Ly~stG~---~g~--v~~iD~~Tgkv~~~~l~~~---------~FgeGit~~g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           58 QGLVFH-QGHFFESTGH---QGT--LRQLSLESAQPVWMERLGN---------IFAEGLASDGERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             EEEEEE-TTEEEEEETT---TTE--EEECCSSCSSCSEEEECTT---------CCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred             ceEEEE-CCEEEEEcCC---CCE--EEEEECCCCcEEeEECCCC---------cceeEEEEeCCEEEEEEccCCEEEEEE
Confidence            567777 7777776644   355  6677777653333333322         112335667788998888888999999


Q ss_pred             CCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC---Ccccc
Q 006979          172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS---DFYAF  248 (623)
Q Consensus       172 ~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~---~~~~~  248 (623)
                      +++. .....+...    ..   ...+++||++|+.. . . .      ..|+++|.++.+......+....   .+.+.
T Consensus       123 ~~Tl-~~~~ti~~~----~e---GwGLt~Dg~~L~vS-d-G-s------~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNe  185 (268)
T 3nok_A          123 GMPP-QRERTTRYS----GE---GWGLCYWNGKLVRS-D-G-G------TMLTFHEPDGFALVGAVQVKLRGQPVELINE  185 (268)
T ss_dssp             TTTT-EEEEEEECS----SC---CCCEEEETTEEEEE-C-S-S------SEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             CCcC-cEEEEEeCC----Cc---eeEEecCCCEEEEE-C-C-C------CEEEEEcCCCCeEEEEEEeCCCCcccccccc
Confidence            9876 233444432    11   12356788876554 3 2 1      67999999987632112222221   23344


Q ss_pred             eeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcC---------CCCCccccCcCceeCCCCcEEEEEe
Q 006979          249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG---------FDPTIVESPTEPKWSSKGELFFVTD  319 (623)
Q Consensus       249 p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ws~DG~l~~~~~  319 (623)
                      .+|. || +|+...|.       ..+|.++|.+++..+ ...-+.+         .+..  .-...++|+|+++.+|++.
T Consensus       186 Le~~-dG-~lyanvw~-------s~~I~vIDp~TG~V~-~~Idl~~L~~~~~~~~~~~~--~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          186 LECA-NG-VIYANIWH-------SSDVLEIDPATGTVV-GVIDASALTRAVAGQVTNPE--AVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEE-TT-EEEEEETT-------CSEEEEECTTTCBEE-EEEECHHHHHHHTTTCCCTT--CCEEEEEECTTTCCEEEEE
T ss_pred             cEEe-CC-EEEEEECC-------CCeEEEEeCCCCcEE-EEEECCCCcccccccccCcC--CceEEEEEcCCCCEEEEeC
Confidence            5676 77 46655443       346999998877421 1111111         1101  2446789999988556665


Q ss_pred             CCCCeeeEEEEec
Q 006979          320 RKNGFWNLHKWIE  332 (623)
Q Consensus       320 ~~~g~~~L~~~d~  332 (623)
                      .  -|-.||.+.+
T Consensus       254 K--~Wp~~~ev~~  264 (268)
T 3nok_A          254 K--LWPRLFEVRL  264 (268)
T ss_dssp             T--TCSEEEEEEE
T ss_pred             C--CCCceEEEEE
Confidence            4  5667876643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=0.0013  Score=69.82  Aligned_cols=163  Identities=6%  Similarity=0.020  Sum_probs=95.5

Q ss_pred             CEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceee-------CCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF-------DPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       155 d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~-------sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      +.|++.....+.|+++|++++  ..+.|.........+..++.|       +++|++|++....... . .....+++++
T Consensus       152 ~~Lyv~~~~~~~i~~ID~~~~--~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~-~-~~~~~V~~i~  227 (496)
T 3kya_A          152 DHLYICYDGHKAIQLIDLKNR--MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK-G-DESPSVYIIK  227 (496)
T ss_dssp             EEEEEEEETEEEEEEEETTTT--EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT-G-GGEEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEECCCC--EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC-c-ccCceEEEEe
Confidence            367777655567999999876  555544331111234556778       9999977665443211 0 1235688887


Q ss_pred             cCC-CCccc-c--eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEec-------CCCc---e--e----
Q 006979          228 LNG-QNIQE-P--KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-------ENGD---V--Y----  287 (623)
Q Consensus       228 l~~-g~~~~-~--~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~-------~~~~---~--~----  287 (623)
                      .+. |.... .  +.+.. .......+.+|++++|++..+.       ..+|+++|++       ++..   .  .    
T Consensus       228 r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~-------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          228 RNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYE-------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             CCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETT-------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             cCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECC-------CCEEEEEecccccccccCceeecccccccccc
Confidence            655 33211 0  23332 2233456789988889888743       3469999997       4421   0  0    


Q ss_pred             eeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCC
Q 006979          288 KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~  334 (623)
                      ...+..-.+ .  .....++|+|+|+.+|+++.  +..+|++++.++
T Consensus       300 ~~~l~~~~~-~--~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg  341 (496)
T 3kya_A          300 FKQLFTIAD-P--SWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDE  341 (496)
T ss_dssp             EEEEEECSS-S--SCCEEEEECTTSSEEEEEET--TTTEEEEEEEET
T ss_pred             cceeEecCC-C--CCceEEEEcCCCCEEEEEeC--CCCEEEEEecCC
Confidence            112222211 1  23457899999996677776  566888876544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.69  E-value=0.0067  Score=57.84  Aligned_cols=195  Identities=12%  Similarity=0.097  Sum_probs=110.3

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~  271 (623)
                      +...+.|++  +.|+......+      .+.|.++|+++|++  .+.+.-+.. +......++|++|+.+.|.       
T Consensus        22 ftqGL~~~~--~~LyestG~~g------~S~v~~vD~~tgkv--~~~~~l~~~-~fgeGi~~~~~~ly~ltw~-------   83 (243)
T 3mbr_X           22 FTEGLFYLR--GHLYESTGETG------RSSVRKVDLETGRI--LQRAEVPPP-YFGAGIVAWRDRLIQLTWR-------   83 (243)
T ss_dssp             CEEEEEEET--TEEEEEECCTT------SCEEEEEETTTCCE--EEEEECCTT-CCEEEEEEETTEEEEEESS-------
T ss_pred             ccccEEEEC--CEEEEECCCCC------CceEEEEECCCCCE--EEEEeCCCC-cceeEEEEeCCEEEEEEee-------
Confidence            334466765  45555443322      26899999999984  222322222 2224466788999887754       


Q ss_pred             ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeE-EEEeecc--cccc
Q 006979          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLD--AEFS  348 (623)
Q Consensus       272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~-~~l~~~~--~~~~  348 (623)
                      ...++++|.++..   ....+.-..       .....++||+.+|+++.   ...|+.+|+++.+. +.+.-..  ..+.
T Consensus        84 ~~~v~v~D~~tl~---~~~ti~~~~-------~Gwglt~dg~~L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~  150 (243)
T 3mbr_X           84 NHEGFVYDLATLT---PRARFRYPG-------EGWALTSDDSHLYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLD  150 (243)
T ss_dssp             SSEEEEEETTTTE---EEEEEECSS-------CCCEEEECSSCEEEECS---SSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             CCEEEEEECCcCc---EEEEEeCCC-------CceEEeeCCCEEEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccc
Confidence            4569999998763   222222211       13344567886667763   45799999998764 3333221  1111


Q ss_pred             cccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-ecccC------------Cc-ceEee--eecCCE
Q 006979          349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIP------------FT-DIDNI--TLGNDC  412 (623)
Q Consensus       349 ~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~~------------~~-~v~~~--~~~~~~  412 (623)
                            ..+.+.+.    + +.+|...  -....|.++|+.+|++. .+...            .. ...++  ++++++
T Consensus       151 ------~lNeLe~~----~-G~lyanv--w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~  217 (243)
T 3mbr_X          151 ------NLNELEWV----N-GELLANV--WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR  217 (243)
T ss_dssp             ------CEEEEEEE----T-TEEEEEE--TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred             ------cceeeEEe----C-CEEEEEE--CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence                  11223332    3 4566433  23448999999998875 33311            11 23444  667888


Q ss_pred             EEEEEecCCCCCeEEEEEcCC
Q 006979          413 LFVEGASGVEPSSVAKVTLDD  433 (623)
Q Consensus       413 ~~~~~~s~~~~~~ly~~~l~~  433 (623)
                      +++++-   .-+.+|.+.+..
T Consensus       218 lfVTGK---~wp~~~~v~~~~  235 (243)
T 3mbr_X          218 LFVTGK---RWPMLYEIRLTP  235 (243)
T ss_dssp             EEEEET---TCSEEEEEEECC
T ss_pred             EEEECC---CCCcEEEEEEec
Confidence            887763   336788877643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.68  E-value=0.0058  Score=64.27  Aligned_cols=157  Identities=12%  Similarity=0.047  Sum_probs=89.6

Q ss_pred             eEEEeC----CEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          149 AFRIFG----DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       149 ~~~~s~----d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      ..++++    +.|++.+.. ++|++++++++  ..+.+...    ..+...++++|+|+ |+++......    ....++
T Consensus       143 gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g--~v~~~~~~----~~~P~giavd~dG~-lyVad~~~~~----~~~gv~  210 (433)
T 4hw6_A          143 RMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQ--YVDIKTTN----IGQCADVNFTLNGD-MVVVDDQSSD----TNTGIY  210 (433)
T ss_dssp             EEEECTTTTTCEEEEECBT-SCEEEEETTTT--EEEEECCC----CSCEEEEEECTTCC-EEEEECCSCT----TSEEEE
T ss_pred             eEEEccccCCCEEEEEeCC-CCEEEEECCCC--EEEEeecC----CCCccEEEECCCCC-EEEEcCCCCc----ccceEE
Confidence            345554    477777655 78999999766  55555432    33456788999999 5554332111    124567


Q ss_pred             EEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  304 (623)
                      .++..++.. ....+. ........+++|++..|++..+.       ..+|++++.+++..  ...+..... .  ....
T Consensus       211 ~~~~~~~~~-~~~~~~-~~~~P~giavd~~~G~lyv~d~~-------~~~V~~~d~~~g~~--~~~~~~~~~-~--~~~~  276 (433)
T 4hw6_A          211 LFTRASGFT-ERLSLC-NARGAKTCAVHPQNGKIYYTRYH-------HAMISSYDPATGTL--TEEEVMMDT-K--GSNF  276 (433)
T ss_dssp             EECGGGTTC-CEEEEE-ECSSBCCCEECTTTCCEEECBTT-------CSEEEEECTTTCCE--EEEEEECSC-C--SSCE
T ss_pred             EEECCCCee-cccccc-ccCCCCEEEEeCCCCeEEEEECC-------CCEEEEEECCCCeE--EEEEeccCC-C--CCcc
Confidence            776655431 012222 12233456799955557766422       34699998875421  022222221 1  1223


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEEEecC
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~  333 (623)
                      .++|+|||+.+|+++.  +..+|++++.+
T Consensus       277 ~ia~dpdG~~LYvad~--~~~~I~~~~~d  303 (433)
T 4hw6_A          277 HIVWHPTGDWAYIIYN--GKHCIYRVDYN  303 (433)
T ss_dssp             EEEECTTSSEEEEEET--TTTEEEEEEBC
T ss_pred             cEEEeCCCCEEEEEeC--CCCEEEEEeCC
Confidence            5899999995556665  45578887765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.66  E-value=0.0018  Score=65.43  Aligned_cols=156  Identities=11%  Similarity=-0.006  Sum_probs=89.1

Q ss_pred             cCCccCceEEcC-C--CcEEEEeecCCCCCceEEEEcCCCCCCCCc-ccCCCCCccceeeeecCCceEEEeCC-EEEEEe
Q 006979           87 ASKRLGGTAVDG-H--GRLIWLESRPTEAGRGVLVKEPAKAGDEPS-DITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSN  161 (623)
Q Consensus        87 ~~~~~~~~~~~~-~--~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~-~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~  161 (623)
                      ....+..+.|+| +  +.+...-..   +|...+|.....  +... ..+.        .|...+.+..++++ ..+++.
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~~---dg~i~iw~~~~~--~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGSW---ANDVRCWEVQDS--GQTIPKAQQ--------MHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEET---TSEEEEEEECTT--SCEEEEEEE--------ECSSCEEEEEECTTSSEEEEE
T ss_pred             CCCceEEEEEcCCCCCceEEEEECC---CCcEEEEEcCCC--CceeEEEec--------cccCCEEEEEECcCCCEEEEE
Confidence            345677889998 4  465555433   477777776542  1211 1111        12223455666655 455566


Q ss_pred             CCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceee--CCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec
Q 006979          162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF--DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL  239 (623)
Q Consensus       162 ~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~--sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l  239 (623)
                      ..++.|.++|+.++  ....+...    ........|  +|+++.++....+         ..|.++|+.+++.  ...+
T Consensus       105 ~~dg~v~iwd~~~~--~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~--~~~~  167 (368)
T 3mmy_A          105 SCDKTAKMWDLSSN--QAIQIAQH----DAPVKTIHWIKAPNYSCVMTGSWD---------KTLKFWDTRSSNP--MMVL  167 (368)
T ss_dssp             ETTSEEEEEETTTT--EEEEEEEC----SSCEEEEEEEECSSCEEEEEEETT---------SEEEEECSSCSSC--SEEE
T ss_pred             cCCCcEEEEEcCCC--Cceeeccc----cCceEEEEEEeCCCCCEEEEccCC---------CcEEEEECCCCcE--EEEE
Confidence            67888999999876  44333322    334566778  9999877765543         5689999988762  2333


Q ss_pred             ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC
Q 006979          240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN  283 (623)
Q Consensus       240 ~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~  283 (623)
                      ... .......++  +..++....+        ..+.++++...
T Consensus       168 ~~~-~~~~~~~~~--~~~~~~~~~~--------~~i~~~~~~~~  200 (368)
T 3mmy_A          168 QLP-ERCYCADVI--YPMAVVATAE--------RGLIVYQLENQ  200 (368)
T ss_dssp             ECS-SCEEEEEEE--TTEEEEEEGG--------GCEEEEECSSS
T ss_pred             ecC-CCceEEEec--CCeeEEEeCC--------CcEEEEEeccc
Confidence            322 222223343  4455544422        23777787765

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.63  E-value=0.0019  Score=69.46  Aligned_cols=198  Identities=8%  Similarity=-0.021  Sum_probs=118.2

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ...+..+.||| |..+.-..    .+|...+|..  .   .....+.....+    .+.+..++++++| ..+++...++
T Consensus        85 ~~~V~~vawSPdG~~LAs~s----~dg~V~iwd~--~---~~l~~l~~~~~~----~~~sv~svafSPDG~~LAsgs~DG  151 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLS----NNGNVSVFKD--N---KMLTNLDSKGNL----SSRTYHCFEWNPIESSIVVGNEDG  151 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEE----TTSCEEEEET--T---EEEEECCCSSCS----TTTCEEEEEECSSSSCEEEEETTS
T ss_pred             CCcEEEEEECCCCCEEEEEe----CCCcEEEEeC--C---ceeeeccCCCcc----ccccEEEEEEcCCCCEEEEEcCCC
Confidence            34567899999 77776443    2366666641  1   111111111000    0112446777777 5666777889


Q ss_pred             cEEEEeCCCCCCCc--------eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc-cc
Q 006979          166 RLYKHSIDSKDSSP--------LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-EP  236 (623)
Q Consensus       166 ~l~~~d~~~g~~~~--------~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~-~~  236 (623)
                      .|-++++.++  ..        ..+..........+...+|||||  ++....|         +.++++|++++... ..
T Consensus       152 tVkIWd~~~~--~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D---------~tVrlWd~~~~~~~~~~  218 (588)
T 2j04_A          152 ELQFFSIRKN--SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN---------NSVFSMTVSASSHQPVS  218 (588)
T ss_dssp             EEEEEECCCC--TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT---------CCEEEECCCSSSSCCCE
T ss_pred             EEEEEECCCC--ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC---------CeEEEEECCCCccccce
Confidence            9999999876  32        23321100112346678999999  5554443         45888898877621 11


Q ss_pred             eecccC-CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee--CCCCc
Q 006979          237 KVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW--SSKGE  313 (623)
Q Consensus       237 ~~l~~~-~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w--s~DG~  313 (623)
                      +.+..+ ...+...+||  |++|+-.. +        ..|.++++.++.   ......+..    ..+..+.+  +|||+
T Consensus       219 ~tL~~~h~~~V~svaFs--g~~LASa~-~--------~tIkLWd~~~~~---~~~~~~gh~----~~V~~va~~~s~d~~  280 (588)
T 2j04_A          219 RMIQNASRRKITDLKIV--DYKVVLTC-P--------GYVHKIDLKNYS---ISSLKTGSL----ENFHIIPLNHEKEST  280 (588)
T ss_dssp             EEEECCCSSCCCCEEEE--TTEEEEEC-S--------SEEEEEETTTTE---EEEEECSCC----SCCCEEEETTCSSCE
T ss_pred             eeecccccCcEEEEEEE--CCEEEEEe-C--------CeEEEEECCCCe---EEEEEcCCC----ceEEEEEeeeCCCCC
Confidence            234323 3457778899  68787553 2        258899988761   223333544    56778899  99998


Q ss_pred             EEEEEeCCCCeeeEEEEe
Q 006979          314 LFFVTDRKNGFWNLHKWI  331 (623)
Q Consensus       314 l~~~~~~~~g~~~L~~~d  331 (623)
                      .+.++.. +|. +||..|
T Consensus       281 ~La~a~e-dG~-klw~~d  296 (588)
T 2j04_A          281 ILLMSNK-TSY-KVLLED  296 (588)
T ss_dssp             EEEECSS-CEE-EEEESS
T ss_pred             EEEEEcC-CCC-EEEeec
Confidence            7767776 677 888876

>1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A*

Probab=97.60  E-value=0.00042  Score=66.61  Aligned_cols=141  Identities=13%  Similarity=0.087  Sum_probs=85.5

Q ss_pred             EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cC----------------CHHhHHHHcCce
Q 006979          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL----------------NLSIQYWTSRGW  525 (623)
Q Consensus       463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~----------------~~~~~~~a~~G~  525 (623)
                      .+.+... .+..+..|++...+.      ....|++|+++|||+..... .+                .....-|.+. .
T Consensus        23 y~~v~~~-~~~~lFywf~es~~~------~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW~~~-a   94 (255)
T 1whs_A           23 YITVDEG-AGRSLFYLLQEAPED------AQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKV-A   94 (255)
T ss_dssp             EEEEETT-TTEEEEEEEECCCGG------GCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCGGGT-S
T ss_pred             EEECCCC-CCcEEEEEEEEecCC------CCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCccccccc-C
Confidence            4555544 577888888876531      35679999999999755432 10                0112224443 6


Q ss_pred             EEEEECC-CCCCCCchhHHHhhccCCc-cchHHHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHhc----C---C
Q 006979          526 AFVDVNY-GGSTGYGREFRERLLGRWG-IVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA----F---R  595 (623)
Q Consensus       526 ~v~~~d~-rGs~~~g~~~~~~~~~~~g-~~~~~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~----~---~  595 (623)
                      .++-+|. .|.| +...-.......++ ....+|+...++ |+.+.+.....++.|.|.||||..+-.++.    +   .
T Consensus        95 nvlfiDqPvGtG-fSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~  173 (255)
T 1whs_A           95 NVLFLDSPAGVG-FSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV  173 (255)
T ss_dssp             EEEEECCSTTST-TCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSS
T ss_pred             CEEEEecCCCCc-cCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCcc
Confidence            8899995 4543 32211110000112 123455555554 445555555678999999999999876662    1   1


Q ss_pred             CceeEEEecccCCCHHH
Q 006979          596 DTFKAGASLYGVSIPVI  612 (623)
Q Consensus       596 ~~f~a~v~~~g~~d~~~  612 (623)
                      =-+++++...|+.|...
T Consensus       174 inLkGi~ign~~~d~~~  190 (255)
T 1whs_A          174 INLKGFMVGNGLIDDYH  190 (255)
T ss_dssp             CEEEEEEEEEECCBHHH
T ss_pred             cccceEEecCCccCHHH
Confidence            35899999999998754

>2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A*

Probab=97.59  E-value=0.00028  Score=68.08  Aligned_cols=89  Identities=12%  Similarity=-0.060  Sum_probs=62.4

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|.||++||.+.  ....|...+..+. .+|.|+.+|++|.+                ...+|+.+.++.+..     .+
T Consensus        22 ~~~l~~~hg~~~--~~~~~~~~~~~l~-~~~~v~~~d~~g~~----------------~~~~~~~~~i~~~~~-----~~   77 (244)
T 2cb9_A           22 GKNLFCFPPISG--FGIYFKDLALQLN-HKAAVYGFHFIEED----------------SRIEQYVSRITEIQP-----EG   77 (244)
T ss_dssp             SSEEEEECCTTC--CGGGGHHHHHHTT-TTSEEEEECCCCST----------------THHHHHHHHHHHHCS-----SS
T ss_pred             CCCEEEECCCCC--CHHHHHHHHHHhC-CCceEEEEcCCCHH----------------HHHHHHHHHHHHhCC-----CC
Confidence            357888999843  3345666666665 58999999999831                124566666655421     35


Q ss_pred             ceEEEEcChHHHHHHHHh-cC---CCceeEEEecccC
Q 006979          575 RLCITGGSAGGYTTLAAL-AF---RDTFKAGASLYGV  607 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~---~~~f~a~v~~~g~  607 (623)
                      ++.++|||+||.+++.++ ..   ++.++..|...+.
T Consensus        78 ~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~  114 (244)
T 2cb9_A           78 PYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAY  114 (244)
T ss_dssp             CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred             CEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCC
Confidence            799999999999999888 43   5778887776654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.0026  Score=73.60  Aligned_cols=199  Identities=9%  Similarity=-0.070  Sum_probs=111.3

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      ....+|||||++|+....+         ..|.+++..+++   ..........+...+||| |++|+-...|        
T Consensus        20 V~~lafspdg~~lAsgs~D---------g~I~lw~~~~~~---~~~~~~~~~~V~~l~fsp-g~~L~S~s~D--------   78 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIATVT---------GEVHIYGQQQVE---VVIKLEDRSAIKEMRFVK-GIYLVVINAK--------   78 (902)
T ss_dssp             EEEEEEETTTTEEEEEETT---------SEEEEECSTTCE---EEEECSSCCCEEEEEEET-TTEEEEEETT--------
T ss_pred             cEEEEECCCCCEEEEEeCC---------CEEEEEeCCCcE---EEEEcCCCCCEEEEEEcC-CCEEEEEECc--------
Confidence            5568899999988776554         468888887664   322223334466788999 8877766533        


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc-----ccc
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-----AEF  347 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-----~~~  347 (623)
                      ..|.+.|+.++..   ...+. ..    ..+....|+|||++++.... +|.  |..+|..+++........     ...
T Consensus        79 ~~v~lWd~~~~~~---~~~~~-~~----~~V~~v~~sp~g~~l~sgs~-dg~--V~lwd~~~~~~~~~~i~~~~~~~~~~  147 (902)
T 2oaj_A           79 DTVYVLSLYSQKV---LTTVF-VP----GKITSIDTDASLDWMLIGLQ-NGS--MIVYDIDRDQLSSFKLDNLQKSSFFP  147 (902)
T ss_dssp             CEEEEEETTTCSE---EEEEE-CS----SCEEEEECCTTCSEEEEEET-TSC--EEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred             CeEEEEECCCCcE---EEEEc-CC----CCEEEEEECCCCCEEEEEcC-CCc--EEEEECCCCccccceecccccccccc
Confidence            3488889887632   22222 22    35678899999996655554 454  555677777643221100     000


Q ss_pred             -ccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-ecccC------------------CcceEee-
Q 006979          348 -SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIP------------------FTDIDNI-  406 (623)
Q Consensus       348 -~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~~------------------~~~v~~~-  406 (623)
                       +..   .....+.|.   |++..++++...+|.  + ++|+.+++.. .+...                  ...+..+ 
T Consensus       148 ~~h~---~~V~sl~~s---p~~~~~l~~g~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~  218 (902)
T 2oaj_A          148 AARL---SPIVSIQWN---PRDIGTVLISYEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL  218 (902)
T ss_dssp             SSCC---CCCCEEEEE---TTEEEEEEEECSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred             ccCC---CCeEEEEEc---cCCCCEEEEEeCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence             000   011233443   255455555555554  4 5677766543 23211                  1235444 


Q ss_pred             -eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          407 -TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       407 -~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                       ++++..++ +++..   ..|...|+.+++.
T Consensus       219 fspdg~~la-sgs~D---g~i~lWd~~~g~~  245 (902)
T 2oaj_A          219 YHPNSLHII-TIHED---NSLVFWDANSGHM  245 (902)
T ss_dssp             ECTTSSEEE-EEETT---CCEEEEETTTCCE
T ss_pred             EcCCCCEEE-EEECC---CeEEEEECCCCcE
Confidence             56665444 44332   3577778877653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.55  E-value=0.01  Score=58.54  Aligned_cols=241  Identities=7%  Similarity=-0.036  Sum_probs=124.9

Q ss_pred             ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEE
Q 006979           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK  169 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~  169 (623)
                      .+..+.++|++.....-.   .+|...+|.....   +....+..        |......+...+. ++++...++.+..
T Consensus        69 ~V~~v~~~~~~~~l~sgs---~Dg~v~iw~~~~~---~~~~~~~~--------h~~~~~~~~~~~~-~l~s~~~~~~~~~  133 (318)
T 4ggc_A           69 YISSVAWIKEGNYLAVGT---SSAEVQLWDVQQQ---KRLRNMTS--------HSARVGSLSWNSY-ILSSGSRSGHIHH  133 (318)
T ss_dssp             CEEEEEECTTSSEEEEEE---TTSEEEEEETTTT---EEEEEEEC--------CSSCEEEEEEETT-EEEEEETTSEEEE
T ss_pred             eEEEEEECCCCCEEEEEE---CCCcEEEeecCCc---eeEEEecC--------ccceEEEeecCCC-EEEEEecCCceEe
Confidence            356778887333333332   2466666654322   21111110        1111223444444 4445556666777


Q ss_pred             EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc--ceecccCCCccc
Q 006979          170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE--PKVLVSGSDFYA  247 (623)
Q Consensus       170 ~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~--~~~l~~~~~~~~  247 (623)
                      ++...+......+...    ........++++|+.++....+         ..+.+.|+.+++...  ..........+.
T Consensus       134 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~  200 (318)
T 4ggc_A          134 HDVRVAEHHVATLSGH----SQEVCGLRWAPDGRHLASGGND---------NLVNVWPSAPGEGGWVPLQTFTQHQGAVK  200 (318)
T ss_dssp             EETTSSSCEEEEEECC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEESSCBTTBSCCSEEECCCCSCEE
T ss_pred             eecCCCceeEEEEcCc----cCceEEEEEcCCCCEEEEEecC---------cceeEEECCCCcccccceeeecccCCceE
Confidence            7766541111222221    2334557799999988766554         447788988764210  111122223345


Q ss_pred             ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeee
Q 006979          248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN  326 (623)
Q Consensus       248 ~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~  326 (623)
                      ...|+|++..++++.....     ...|.+.+.....   ...... ..    ..+....|+++++ ++..+..  ....
T Consensus       201 ~~~~~~~~~~~~~~~~~~~-----~~~i~lwd~~~~~---~~~~~~-~~----~~v~~~~~~~~~~~~~~~sg~--~d~~  265 (318)
T 4ggc_A          201 AVAWCPWQSNVLATGGGTS-----DRHIRIWNVCSGA---CLSAVD-AH----SQVCSILWSPHYKELISGHGF--AQNQ  265 (318)
T ss_dssp             EEEECTTSTTEEEEEECTT-----TCEEEEEETTTCC---EEEEEE-CS----SCEEEEEEETTTTEEEEEECT--TTCC
T ss_pred             EEEecCCCCcEEEEEecCC-----CCEEEEEeccccc---cccccc-ce----eeeeeeeecccccceEEEEEc--CCCE
Confidence            5679999888876653332     3457777876652   222222 22    3455778999988 5555433  2235


Q ss_pred             EEEEecCCCeEEE-EeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          327 LHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       327 L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                      |..+|..+++... +......+....|+            |+++. +++...+|.-+||.+
T Consensus       266 i~iwd~~~~~~~~~l~gH~~~V~~l~~s------------pdg~~-l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          266 LVIWKYPTMAKVAELKGHTSRVLSLTMS------------PDGAT-VASAAADETLRLWRC  313 (318)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEEC------------TTSSC-EEEEETTTEEEEECC
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEc------------CCCCE-EEEEecCCeEEEEEC
Confidence            6677877776433 33222233333333            26654 456667887777643

>1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22

Probab=97.54  E-value=0.00027  Score=67.29  Aligned_cols=87  Identities=10%  Similarity=-0.003  Sum_probs=61.2

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.|+++||.+.  ....|......+.+  |.|+.+|++|.+   .             ..+|+.+.++.+..     .++
T Consensus        18 ~~l~~~hg~~~--~~~~~~~~~~~l~~--~~v~~~d~~g~~---~-------------~~~~~~~~i~~~~~-----~~~   72 (230)
T 1jmk_C           18 QIIFAFPPVLG--YGLMYQNLSSRLPS--YKLCAFDFIEEE---D-------------RLDRYADLIQKLQP-----EGP   72 (230)
T ss_dssp             EEEEEECCTTC--CGGGGHHHHHHCTT--EEEEEECCCCST---T-------------HHHHHHHHHHHHCC-----SSC
T ss_pred             CCEEEECCCCC--chHHHHHHHHhcCC--CeEEEecCCCHH---H-------------HHHHHHHHHHHhCC-----CCC
Confidence            67888999843  33456666777754  999999999732   1             13466666665532     257


Q ss_pred             eEEEEcChHHHHHHHHh-cC---CCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AF---RDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~---~~~f~a~v~~~g~  607 (623)
                      +.++|||+||.+++.++ ..   ++.++..|...+.
T Consensus        73 ~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~  108 (230)
T 1jmk_C           73 LTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSY  108 (230)
T ss_dssp             EEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred             eEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCC
Confidence            99999999999999887 43   4668877776543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.49  E-value=0.0028  Score=64.20  Aligned_cols=252  Identities=15%  Similarity=0.097  Sum_probs=0.0

Q ss_pred             cccccccCCCCCCCCCCCCCccccCCCCCCCcCCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCC
Q 006979           47 GCKIMASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGD  126 (623)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~s~~t~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg  126 (623)
                      |.|...+++++..+..++           .+.-+++.+...-..+.++.+.|++++|..+     .....|++.+..+|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~va~gL~~P~~ia~~pdG~llVte-----r~~G~I~~v~~~~g~   64 (347)
T 3das_A            1 GAMSSPAGSPTEQAPPAK-----------GSVKVLRTVATGLNSPWGLAPLPGGDLLVSS-----RDEATITRVDAKTGR   64 (347)
T ss_dssp             -------------CCCSS-----------CCEEEEEEEECCCSSEEEEEECTTSCEEEEE-----TTTCEEEEECTTTCC
T ss_pred             CCccCCCCCCCCCCCCcc-----------CCCceeEEeecCCCCceEEEEcCCCcEEEEE-----ecCCEEEEEECCCCc


Q ss_pred             CCcc-----cCCCCCccceeeeecCCceEEEeCC-------EEEEEeCCCCcEEEEeCCC---------CCCCceecCCC
Q 006979          127 EPSD-----ITPKEYAVRTTAQEYGGGAFRIFGD-------TVIFSNYKDQRLYKHSIDS---------KDSSPLPITPD  185 (623)
Q Consensus       127 ~~~~-----l~p~~~~~r~~~~~~g~~~~~~s~d-------~l~f~~~~~~~l~~~d~~~---------g~~~~~~Lt~~  185 (623)
                      ....     +....        +.|...+++++|       .++++....++|+++.++.         .  ....++..
T Consensus        65 ~~~v~~~~~v~~~g--------~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~--~~~i~~~~  134 (347)
T 3das_A           65 KTELGEVPGVSPSG--------EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGA--PDTVFRGI  134 (347)
T ss_dssp             EEEEEECTTCCCBT--------TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCC--CEEEEEEE
T ss_pred             EeeecccCceeecC--------CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCC--cEEEEEcC


Q ss_pred             CCCCCeeecceeeCCCCCEEEEEEeccCC-----CCCCceeEEEEEEcCCC--------CcccceecccCCCcccceeeC
Q 006979          186 YGEPLVSYADGIFDPRFNRYVTVREDRRQ-----DALNSTTEIVAIALNGQ--------NIQEPKVLVSGSDFYAFPRMD  252 (623)
Q Consensus       186 ~~~~~~~~~d~~~sPdG~~l~~v~~~~~~-----~~~~~~~~L~~idl~~g--------~~~~~~~l~~~~~~~~~p~wS  252 (623)
                      .......-..+.|+||| +|++..-+...     ........|++++.++.        .   .+....+.......+|.
T Consensus       135 p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~---~~i~a~G~RNp~Gla~d  210 (347)
T 3das_A          135 PKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPG---SPVYSYGHRNVQGLAWD  210 (347)
T ss_dssp             CCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTT---CCEEEBCCSBCCEEEEC
T ss_pred             CCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCC---CeEEeeCCCCcceEEEC


Q ss_pred             CCCCEEEEEEecCCCC-----------------------------------------------------CCCceEEEEEE
Q 006979          253 PRGERMAWIEWHHPNM-----------------------------------------------------PWDKAELWVGY  279 (623)
Q Consensus       253 PDG~~la~~~~~~~~~-----------------------------------------------------p~~~~~L~v~d  279 (623)
                      |+|+ |++........                                                     .+...+|+.+.
T Consensus       211 p~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~  289 (347)
T 3das_A          211 DKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIP  289 (347)
T ss_dssp             TTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEE
T ss_pred             CCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEE


Q ss_pred             ecCCCc-eeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCC-------eeeEEEEecC
Q 006979          280 ISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG-------FWNLHKWIES  333 (623)
Q Consensus       280 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g-------~~~L~~~d~~  333 (623)
                      ++.++. .....++.+..    ..+..+...|||.||+..+..+|       .-+|+++.+.
T Consensus       290 ~~~~~~~~~~e~~l~~~~----gR~~dv~~~pDG~lyv~td~~~g~g~p~~~ddri~r~~~~  347 (347)
T 3das_A          290 LKGTAAAADPQAFLEGEY----GRLRTVAPAGGDKLWLVTSNTDGRGDAKGGDDRILELEVE  347 (347)
T ss_dssp             EETTEESSCCEEESTTTS----SCEEEEEEEETTEEEEEECTTSSSSCCCTTCSCEEEEEEC
T ss_pred             ecCCceecceEEeecCCC----CCccEEEECCCCcEEEEEcCCCCCCCCCCCCCEEEEEeCC

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.49  E-value=0.038  Score=61.65  Aligned_cols=85  Identities=11%  Similarity=-0.006  Sum_probs=47.2

Q ss_pred             cceeeCCCCCEEEEEEeccCC----------CCCCceeEEEEEEcCCCCcccceecccCC----CcccceeeCC---CCC
Q 006979          194 ADGIFDPRFNRYVTVREDRRQ----------DALNSTTEIVAIALNGQNIQEPKVLVSGS----DFYAFPRMDP---RGE  256 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~~~~----------~~~~~~~~L~~idl~~g~~~~~~~l~~~~----~~~~~p~wSP---DG~  256 (623)
                      ..+.++|+++.|++...+...          ..+.....|+.+|+++|+.....++....    +....|....   ||+
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            356789999877765543211          11111246999999999843323333221    2234455443   785


Q ss_pred             --EEEEEEecCCCCCCCceEEEEEEecCCCc
Q 006979          257 --RMAWIEWHHPNMPWDKAELWVGYISENGD  285 (623)
Q Consensus       257 --~la~~~~~~~~~p~~~~~L~v~d~~~~~~  285 (623)
                        .+++.. +.      ...||++|..++..
T Consensus       326 ~~~~l~~~-~~------~G~l~~lD~~tG~~  349 (677)
T 1kb0_A          326 PRKVILHA-PK------NGFFFVLDRTNGKF  349 (677)
T ss_dssp             EEEEEEEC-CT------TSEEEEEETTTCCE
T ss_pred             EeeEEEEE-CC------CCEEEEEECCCCCE
Confidence              344443 22      34699999887743

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.46  E-value=0.0015  Score=66.35  Aligned_cols=202  Identities=12%  Similarity=0.066  Sum_probs=106.3

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCc-cc-CCCCCccceeeeecCCceEEEeC--CEEEEEeC--
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPS-DI-TPKEYAVRTTAQEYGGGAFRIFG--DTVIFSNY--  162 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~-~l-~p~~~~~r~~~~~~g~~~~~~s~--d~l~f~~~--  162 (623)
                      ..+.++.+++.++||+++......+...|++++..+| +.. .+ ++.....    .......++++.  +.+|+++.  
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg-~~~~~~~~~~~~~~----~~~~~~~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNN-QLSRVIYLPPPITL----SNSFVNDLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTT-EEEEEEECCTTTSC----TTCCCCEEEEETTTTEEEEEECCS
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCC-eEEEEEECChhhcc----cccccceEEEecCCCEEEEEcCcc
Confidence            4566888887778999985410001234777776533 311 11 2222100    001123455653  47777776  


Q ss_pred             -CCCcEEEEeCCCCCCCcee-cCCC-CCCC--------C----------------eeecceeeCCCCCEEEEEEeccCCC
Q 006979          163 -KDQRLYKHSIDSKDSSPLP-ITPD-YGEP--------L----------------VSYADGIFDPRFNRYVTVREDRRQD  215 (623)
Q Consensus       163 -~~~~l~~~d~~~g~~~~~~-Lt~~-~~~~--------~----------------~~~~d~~~sPdG~~l~~v~~~~~~~  215 (623)
                       .++.|+++|++++  ...+ +... .-.+        .                ...+..+|||||+.|++.....   
T Consensus       142 ~~~~~i~v~d~~~g--~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~---  216 (343)
T 2qe8_A          142 DDKAALIRVDLQTG--LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS---  216 (343)
T ss_dssp             GGGCEEEEEETTTC--CEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC---
T ss_pred             CCCCeEEEEECCCC--CEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC---
Confidence             5667999999866  3333 3210 0000        0                1124577999999887764422   


Q ss_pred             CCCceeEEEEEEcCC---CCccc------ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCce
Q 006979          216 ALNSTTEIVAIALNG---QNIQE------PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV  286 (623)
Q Consensus       216 ~~~~~~~L~~idl~~---g~~~~------~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~  286 (623)
                           ..||+++.+.   +....      ...+ .......+.++++||+ |++..+.       ...|.+++.+++ . 
T Consensus       217 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~-------~~~V~~~d~~~G-~-  280 (343)
T 2qe8_A          217 -----TSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLA-------HSAIGVITSADR-A-  280 (343)
T ss_dssp             -----SEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGG-------GTEEEEEETTTT-E-
T ss_pred             -----CeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccC-------CCeEEEEECCCC-C-
Confidence                 5799998531   11000      0111 1112344578999986 6655433       346888887333 1 


Q ss_pred             eeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979          287 YKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~  320 (623)
                       ...+.....   ...+..+.+++||+||++...
T Consensus       281 -~~~~~~~~~---~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          281 -YKLLVTDEK---LSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             -EEEEEECGG---GSCEEEEEECTTSCEEEEECC
T ss_pred             -EEEEEECCc---eecCCeeEECCCCcEEEEeCc
Confidence             222222111   134567788888887776654

>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A

Probab=97.46  E-value=0.00027  Score=69.92  Aligned_cols=93  Identities=8%  Similarity=-0.011  Sum_probs=60.3

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|.||++||...  ....|...+..+.   +.|+.+|+++..              ....++++.+.+..+++.- ...+
T Consensus        24 ~~~l~~~hg~~~--~~~~~~~~~~~L~---~~v~~~d~~~~~--------------~~~~~~~~a~~~~~~i~~~-~~~~   83 (283)
T 3tjm_A           24 ERPLFLVHPIEG--STTVFHSLASRLS---IPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQV-QPEG   83 (283)
T ss_dssp             SCCEEEECCTTC--CSGGGHHHHHHCS---SCEEEECCCTTS--------------CCSCHHHHHHHHHHHHTTT-CCSS
T ss_pred             CCeEEEECCCCC--CHHHHHHHHHhcC---ceEEEEecCCCC--------------CCCCHHHHHHHHHHHHHHh-CCCC
Confidence            355778999843  3345666666665   899999996521              1123444444333333321 1136


Q ss_pred             ceEEEEcChHHHHHHHHh-cC---CCcee---EEEecccC
Q 006979          575 RLCITGGSAGGYTTLAAL-AF---RDTFK---AGASLYGV  607 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~---~~~f~---a~v~~~g~  607 (623)
                      ++.++||||||.+++.++ ..   ++.++   ..|.+.+.
T Consensus        84 ~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~  123 (283)
T 3tjm_A           84 PYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS  123 (283)
T ss_dssp             CCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCC
T ss_pred             CEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCC
Confidence            899999999999999887 43   77787   77777664

>1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5

Probab=97.44  E-value=0.0004  Score=73.12  Aligned_cols=134  Identities=13%  Similarity=0.065  Sum_probs=81.3

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-C---------------CHHhHHHHcCceEEEE
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-L---------------NLSIQYWTSRGWAFVD  529 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-~---------------~~~~~~~a~~G~~v~~  529 (623)
                      ++.. ++..+..|++...+.      ....|+||++||||+...... +               .....-|.+ -..++-
T Consensus        26 v~v~-~~~~lfy~f~~s~~~------~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~sw~~-~~~~lf   97 (452)
T 1ivy_A           26 LKSS-GSKHLHYWFVESQKD------PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNL-IANVLY   97 (452)
T ss_dssp             EECS-TTEEEEEEEECCSSC------GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGG-SSEEEE
T ss_pred             EeeC-CCCeEEEEEEEcCCC------CCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCcccc-cccEEE
Confidence            3334 567888888866431      345799999999997543211 0               001112333 368899


Q ss_pred             ECC-CCCCCCchhHHHhhccCCccc---hHHHH-HHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-----cCCCcee
Q 006979          530 VNY-GGSTGYGREFRERLLGRWGIV---DVNDC-CSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-----AFRDTFK  599 (623)
Q Consensus       530 ~d~-rGs~~~g~~~~~~~~~~~g~~---~~~D~-~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-----~~~~~f~  599 (623)
                      +|. +|.|- ...    ....+...   ..+|. ....+|+.+.+.....++.|.|.||||+.+-.++     ..+-.++
T Consensus        98 iDqP~GtGf-S~~----~~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~  172 (452)
T 1ivy_A           98 LESPAGVGF-SYS----DDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQ  172 (452)
T ss_dssp             ECCSTTSTT-CEE----SSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEE
T ss_pred             EecCCCCCc-CCc----CCCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccc
Confidence            995 66542 221    11122221   23343 3445566665555568999999999999554444     2345799


Q ss_pred             EEEecccCCCHHH
Q 006979          600 AGASLYGVSIPVI  612 (623)
Q Consensus       600 a~v~~~g~~d~~~  612 (623)
                      +++...|++|...
T Consensus       173 g~~ign~~~d~~~  185 (452)
T 1ivy_A          173 GLAVGNGLSSYEQ  185 (452)
T ss_dssp             EEEEESCCSBHHH
T ss_pred             eEEecCCccChhh
Confidence            9999999998753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.44  E-value=0.008  Score=58.96  Aligned_cols=182  Identities=9%  Similarity=-0.028  Sum_probs=96.3

Q ss_pred             eEEEEEEcCCCCcccceecccCC-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979          221 TEIVAIALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~  299 (623)
                      ..|+++|.++|+.  +..+..+. .......++|||+.|+  ..+        ..|+.+|.+ +.   ..+.+.... . 
T Consensus        15 ~~v~~~d~~tG~~--~w~~~~~~~~~~~~~~~~pdG~ilv--s~~--------~~V~~~d~~-G~---~~W~~~~~~-~-   76 (276)
T 3no2_A           15 NKIAIINKDTKEI--VWEYPLEKGWECNSVAATKAGEILF--SYS--------KGAKMITRD-GR---ELWNIAAPA-G-   76 (276)
T ss_dssp             SEEEEEETTTTEE--EEEEECCTTCCCCEEEECTTSCEEE--ECB--------SEEEEECTT-SC---EEEEEECCT-T-
T ss_pred             CEEEEEECCCCeE--EEEeCCCccCCCcCeEECCCCCEEE--eCC--------CCEEEECCC-CC---EEEEEcCCC-C-
Confidence            6799999988863  22333222 2344567999998554  322        248888873 32   333333221 1 


Q ss_pred             cccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       300 ~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                       ..+..+.+++||++++....  ...+++.+|+++.....+.... ....+..  ......++   ++++ ++++..  .
T Consensus        77 -~~~~~~~~~~dG~~lv~~~~--~~~~v~~vd~~Gk~l~~~~~~~-~~~~~~~--~~~~v~~~---~~G~-~lv~~~--~  144 (276)
T 3no2_A           77 -CEMQTARILPDGNALVAWCG--HPSTILEVNMKGEVLSKTEFET-GIERPHA--QFRQINKN---KKGN-YLVPLF--A  144 (276)
T ss_dssp             -CEEEEEEECTTSCEEEEEES--TTEEEEEECTTSCEEEEEEECC-SCSSGGG--SCSCCEEC---TTSC-EEEEET--T
T ss_pred             -ccccccEECCCCCEEEEecC--CCCEEEEEeCCCCEEEEEeccC-CCCcccc--cccCceEC---CCCC-EEEEec--C
Confidence             23456788999986554332  2457888998655444443211 1111111  01122233   2555 444443  3


Q ss_pred             eEEEEEEeCCCCceeecccCCcceEee-eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          380 RSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       380 ~~~L~~~d~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ...|+.+|.+++.+..+..+....... .++++ +++....   ...|+.+++++|+.
T Consensus       145 ~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~-~~v~~~~---~~~v~~~d~~tG~~  198 (276)
T 3no2_A          145 TSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGD-CLVACGD---AHCFVQLNLESNRI  198 (276)
T ss_dssp             TTEEEEECTTSCEEEEEECSSCCCEEEECTTSC-EEEECBT---TSEEEEECTTTCCE
T ss_pred             CCEEEEECCCCCEEEEEECCCCccceeEcCCCC-EEEEeCC---CCeEEEEeCcCCcE
Confidence            346888999855555555433222222 44444 4444332   24689999887763

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.36  E-value=0.088  Score=54.94  Aligned_cols=228  Identities=11%  Similarity=0.069  Sum_probs=122.3

Q ss_pred             CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      +.+..++++ ++++...++.|.++|+.++ .....+...    ........++  ++.++....+         ..|.++
T Consensus       162 v~~~~~~~~-~l~s~~~dg~i~vwd~~~~-~~~~~~~~h----~~~v~~~~~~--~~~l~s~s~d---------g~i~~w  224 (445)
T 2ovr_B          162 VWSSQMRDN-IIISGSTDRTLKVWNAETG-ECIHTLYGH----TSTVRCMHLH--EKRVVSGSRD---------ATLRVW  224 (445)
T ss_dssp             EEEEEEETT-EEEEEETTSCEEEEETTTT-EEEEEECCC----SSCEEEEEEE--TTEEEEEETT---------SEEEEE
T ss_pred             EEEEEecCC-EEEEEeCCCeEEEEECCcC-cEEEEECCC----CCcEEEEEec--CCEEEEEeCC---------CEEEEE
Confidence            344555555 4555567888999999876 222333322    2234445554  5666655443         568999


Q ss_pred             EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                      |+.+++.  ...+...........|  ||+.|+....+.        .|.++|+..+.   ....+.+..    ..+...
T Consensus       225 d~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~dg--------~i~iwd~~~~~---~~~~~~~~~----~~v~~~  285 (445)
T 2ovr_B          225 DIETGQC--LHVLMGHVAAVRCVQY--DGRRVVSGAYDF--------MVKVWDPETET---CLHTLQGHT----NRVYSL  285 (445)
T ss_dssp             ESSSCCE--EEEEECCSSCEEEEEE--CSSCEEEEETTS--------CEEEEEGGGTE---EEEEECCCS----SCEEEE
T ss_pred             ECCCCcE--EEEEcCCcccEEEEEE--CCCEEEEEcCCC--------EEEEEECCCCc---EeEEecCCC----CceEEE
Confidence            9988762  2333333333444445  888887665332        38888988762   333344433    345566


Q ss_pred             eeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE
Q 006979          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~  385 (623)
                      .|  ||+.++.... ++.  |..+|..+++...... ....+.         .+.+     +++. +++...+|.  |.+
T Consensus       286 ~~--~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~v~---------~~~~-----~~~~-l~~~~~dg~--i~v  343 (445)
T 2ovr_B          286 QF--DGIHVVSGSL-DTS--IRVWDVETGNCIHTLTGHQSLTS---------GMEL-----KDNI-LVSGNADST--VKI  343 (445)
T ss_dssp             EE--CSSEEEEEET-TSC--EEEEETTTCCEEEEECCCCSCEE---------EEEE-----ETTE-EEEEETTSC--EEE
T ss_pred             EE--CCCEEEEEeC-CCe--EEEEECCCCCEEEEEcCCcccEE---------EEEE-----eCCE-EEEEeCCCe--EEE
Confidence            66  7775555544 343  6667777765433222 111111         1122     4454 444445665  445


Q ss_pred             EeCCCCce-eeccc---CCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          386 LDDFGHSL-SLLDI---PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       386 ~d~~~~~~-~~lt~---~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      +|+.+++. ..+..   ....+..+..+++.+ ++++.   ...|..+++.+++.
T Consensus       344 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~s~~~---dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          344 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV-ITSSD---DGTVKLWDLKTGEF  394 (445)
T ss_dssp             EETTTCCEEEEECSTTSCSSCEEEEEECSSEE-EEEET---TSEEEEEETTTCCE
T ss_pred             EECCCCcEEEEEccCCCCCCCEEEEEECCCEE-EEEeC---CCeEEEEECCCCce
Confidence            57766554 34443   223355555555544 34432   25688888887763

>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A

Probab=97.34  E-value=0.00069  Score=68.21  Aligned_cols=104  Identities=9%  Similarity=-0.019  Sum_probs=61.2

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCce
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL  576 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv  576 (623)
                      .|+++||.........|...+..|. .+|.|+.+|++|.+.......+.....+ ....+|+.+.++.+.     +.+++
T Consensus        91 ~l~~~hg~g~~~~~~~~~~l~~~L~-~~~~v~~~d~~G~g~~~~~~~~~~~~~~-~~~a~~~~~~i~~~~-----~~~p~  163 (319)
T 2hfk_A           91 VLVGCTGTAANGGPHEFLRLSTSFQ-EERDFLAVPLPGYGTGTGTGTALLPADL-DTALDAQARAILRAA-----GDAPV  163 (319)
T ss_dssp             EEEEECCCCTTCSTTTTHHHHHTTT-TTCCEEEECCTTCCBC---CBCCEESSH-HHHHHHHHHHHHHHH-----TTSCE
T ss_pred             cEEEeCCCCCCCcHHHHHHHHHhcC-CCCceEEecCCCCCCCcccccCCCCCCH-HHHHHHHHHHHHHhc-----CCCCE
Confidence            6888997211233345556666665 6899999999996542000000000000 111334444444332     13579


Q ss_pred             EEEEcChHHHHHHHHh-cC----CCceeEEEecccC
Q 006979          577 CITGGSAGGYTTLAAL-AF----RDTFKAGASLYGV  607 (623)
Q Consensus       577 ~i~G~S~GG~~~~~~~-~~----~~~f~a~v~~~g~  607 (623)
                      .++|||+||.+++.++ .+    ++.++.+|...+.
T Consensus       164 ~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~  199 (319)
T 2hfk_A          164 VLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPY  199 (319)
T ss_dssp             EEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCC
T ss_pred             EEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCC
Confidence            9999999999999888 44    4568888777654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.34  E-value=0.039  Score=57.71  Aligned_cols=233  Identities=10%  Similarity=0.059  Sum_probs=118.7

Q ss_pred             CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      +.++.++++. +++...++.|.++|+.++ .....+...    ........+  +|+.++....+         ..|.++
T Consensus       202 v~~~~~~~~~-l~s~s~dg~i~~wd~~~~-~~~~~~~~~----~~~v~~~~~--~~~~l~~~~~d---------g~i~iw  264 (445)
T 2ovr_B          202 VRCMHLHEKR-VVSGSRDATLRVWDIETG-QCLHVLMGH----VAAVRCVQY--DGRRVVSGAYD---------FMVKVW  264 (445)
T ss_dssp             EEEEEEETTE-EEEEETTSEEEEEESSSC-CEEEEEECC----SSCEEEEEE--CSSCEEEEETT---------SCEEEE
T ss_pred             EEEEEecCCE-EEEEeCCCEEEEEECCCC-cEEEEEcCC----cccEEEEEE--CCCEEEEEcCC---------CEEEEE
Confidence            3445555554 445557788999999876 222333322    222334445  77777665543         458888


Q ss_pred             EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                      |+.+++.  ...+...........|  ||++|+....+.        .|.++|+..+.   ....+.+..    ..+.. 
T Consensus       265 d~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~d~--------~i~i~d~~~~~---~~~~~~~~~----~~v~~-  324 (445)
T 2ovr_B          265 DPETETC--LHTLQGHTNRVYSLQF--DGIHVVSGSLDT--------SIRVWDVETGN---CIHTLTGHQ----SLTSG-  324 (445)
T ss_dssp             EGGGTEE--EEEECCCSSCEEEEEE--CSSEEEEEETTS--------CEEEEETTTCC---EEEEECCCC----SCEEE-
T ss_pred             ECCCCcE--eEEecCCCCceEEEEE--CCCEEEEEeCCC--------eEEEEECCCCC---EEEEEcCCc----ccEEE-
Confidence            9887752  2334333333444555  889887665332        38888988763   233344333    22233 


Q ss_pred             eeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                       +.+++++++.... +|  .|..+|..+++.............+     ...+.+     +++ ++++...+|.-+  ++
T Consensus       325 -~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~-----v~~~~~-----~~~-~l~s~~~dg~v~--iw  387 (445)
T 2ovr_B          325 -MELKDNILVSGNA-DS--TVKIWDIKTGQCLQTLQGPNKHQSA-----VTCLQF-----NKN-FVITSSDDGTVK--LW  387 (445)
T ss_dssp             -EEEETTEEEEEET-TS--CEEEEETTTCCEEEEECSTTSCSSC-----EEEEEE-----CSS-EEEEEETTSEEE--EE
T ss_pred             -EEEeCCEEEEEeC-CC--eEEEEECCCCcEEEEEccCCCCCCC-----EEEEEE-----CCC-EEEEEeCCCeEE--EE
Confidence             3345665555544 34  4556677666543332211101111     011222     444 445555566544  45


Q ss_pred             eCCCCce-eecc-----cCCcceEee-eecCCEEEEEEecCC-CCCeEEEEEcCC
Q 006979          387 DDFGHSL-SLLD-----IPFTDIDNI-TLGNDCLFVEGASGV-EPSSVAKVTLDD  433 (623)
Q Consensus       387 d~~~~~~-~~lt-----~~~~~v~~~-~~~~~~~~~~~~s~~-~~~~ly~~~l~~  433 (623)
                      |+.+++. ..+.     .....+..+ ...++.++++++... .+..++.+|.+.
T Consensus       388 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          388 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             ETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            7766654 3441     122335555 223344444444333 356677777654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.33  E-value=0.018  Score=57.34  Aligned_cols=187  Identities=16%  Similarity=0.118  Sum_probs=98.0

Q ss_pred             EeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 006979          152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ  231 (623)
Q Consensus       152 ~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g  231 (623)
                      ..++.+++. ..++.|+.+|.+ + .........    ......+..+++|+.++. ..+         ..|+.+|.+ +
T Consensus       105 ~~~~~l~v~-t~~~~l~~~d~~-g-~~~~~~~~~----~~~~~~~~~~~~g~l~vg-t~~---------~~l~~~d~~-g  166 (330)
T 3hxj_A          105 IFEDILYVT-SMDGHLYAINTD-G-TEKWRFKTK----KAIYATPIVSEDGTIYVG-SND---------NYLYAINPD-G  166 (330)
T ss_dssp             EETTEEEEE-CTTSEEEEECTT-S-CEEEEEECS----SCCCSCCEECTTSCEEEE-CTT---------SEEEEECTT-S
T ss_pred             EECCEEEEE-ecCCEEEEEcCC-C-CEEEEEcCC----CceeeeeEEcCCCEEEEE-cCC---------CEEEEECCC-C
Confidence            345566554 345679999987 5 122222221    223456677888874433 221         569999998 5


Q ss_pred             CcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC
Q 006979          232 NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK  311 (623)
Q Consensus       232 ~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D  311 (623)
                      +.  .............+...+||+ | |+..  .       .|+.+| ..+.   .........    ..+..+..++|
T Consensus       167 ~~--~~~~~~~~~~~~~~~~d~~g~-l-~v~t--~-------~l~~~d-~~g~---~~~~~~~~~----~~~~~~~~~~~  225 (330)
T 3hxj_A          167 TE--KWRFKTNDAITSAASIGKDGT-I-YFGS--D-------KVYAIN-PDGT---EKWNFYAGY----WTVTRPAISED  225 (330)
T ss_dssp             CE--EEEEECSSCCCSCCEECTTCC-E-EEES--S-------SEEEEC-TTSC---EEEEECCSS----CCCSCCEECTT
T ss_pred             CE--eEEEecCCCceeeeEEcCCCE-E-EEEe--C-------EEEEEC-CCCc---EEEEEccCC----cceeceEECCC
Confidence            42  222322334455677778887 4 4442  2       288888 4332   222222222    34567788888


Q ss_pred             CcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCC
Q 006979          312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH  391 (623)
Q Consensus       312 G~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~  391 (623)
                      |.+++.+..  +  .|+++|+++..............         .....    .++.|++... +  ..|+++|.++.
T Consensus       226 g~l~v~t~~--~--gl~~~~~~g~~~~~~~~~~~~~~---------~~~~~----~~g~l~v~t~-~--ggl~~~d~~g~  285 (330)
T 3hxj_A          226 GTIYVTSLD--G--HLYAINPDGTEKWRFKTGKRIES---------SPVIG----NTDTIYFGSY-D--GHLYAINPDGT  285 (330)
T ss_dssp             SCEEEEETT--T--EEEEECTTSCEEEEEECSSCCCS---------CCEEC----TTSCEEEECT-T--CEEEEECTTSC
T ss_pred             CeEEEEcCC--C--eEEEECCCCCEeEEeeCCCCccc---------cceEc----CCCeEEEecC-C--CCEEEECCCCc
Confidence            876665543  2  47778865554443332211111         11111    3556666543 2  25888887544


Q ss_pred             ceeecc
Q 006979          392 SLSLLD  397 (623)
Q Consensus       392 ~~~~lt  397 (623)
                      ......
T Consensus       286 ~~~~~~  291 (330)
T 3hxj_A          286 EKWNFE  291 (330)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.32  E-value=0.003  Score=66.50  Aligned_cols=164  Identities=8%  Similarity=-0.067  Sum_probs=86.6

Q ss_pred             CceEEEeCC--EEEE---EeCCCCcEEEEeCCCCC----CCce---ecCCCCCCCCeeecceeeCCC-CCEEEEEEeccC
Q 006979          147 GGAFRIFGD--TVIF---SNYKDQRLYKHSIDSKD----SSPL---PITPDYGEPLVSYADGIFDPR-FNRYVTVREDRR  213 (623)
Q Consensus       147 ~~~~~~s~d--~l~f---~~~~~~~l~~~d~~~g~----~~~~---~Lt~~~~~~~~~~~d~~~sPd-G~~l~~v~~~~~  213 (623)
                      +.+.+++++  .+++   +...++.|.++|+.++.    ...+   .+.... .......+..|+|+ ++.|+....+  
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~las~s~D--  171 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-DAGGMVIDMKWNPTVPSMVAVCLAD--  171 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-SGGGSEEEEEECSSCTTEEEEEETT--
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC-CCCCceEEEEECCCCCCEEEEEECC--
Confidence            345566665  3443   45556778899875320    0001   111100 01234667889998 6666555443  


Q ss_pred             CCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEc
Q 006979          214 QDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA  293 (623)
Q Consensus       214 ~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~  293 (623)
                             +.|.++|+.++..  ..........+...+|||||++|+....+.        .|.++|+...    ....+.
T Consensus       172 -------g~v~iwD~~~~~~--~~~~~~~~~~v~~v~wspdg~~lasgs~dg--------~v~iwd~~~~----~~~~~~  230 (434)
T 2oit_A          172 -------GSIAVLQVTETVK--VCATLPSTVAVTSVCWSPKGKQLAVGKQNG--------TVVQYLPTLQ----EKKVIP  230 (434)
T ss_dssp             -------SCEEEEEESSSEE--EEEEECGGGCEEEEEECTTSSCEEEEETTS--------CEEEECTTCC----EEEEEC
T ss_pred             -------CeEEEEEcCCCcc--eeeccCCCCceeEEEEcCCCCEEEEEcCCC--------cEEEEccCCc----cccccc
Confidence                   4588889987641  111222123355678999999998766332        3788887722    222222


Q ss_pred             CCCC---CccccCcCceeCCCCcEEEEEeCCCCe----eeEEEEecCC
Q 006979          294 GFDP---TIVESPTEPKWSSKGELFFVTDRKNGF----WNLHKWIESN  334 (623)
Q Consensus       294 ~~~~---~~~~~~~~~~ws~DG~l~~~~~~~~g~----~~L~~~d~~~  334 (623)
                      ....   +-...+..+.|++++.++.......|.    ..+..+++..
T Consensus       231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            2110   000256688999988743332221222    2355566543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.29  E-value=0.0076  Score=63.30  Aligned_cols=160  Identities=13%  Similarity=0.074  Sum_probs=93.0

Q ss_pred             cceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          194 ADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       194 ~d~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      ..++++| ++..|+++...         ..|+++|++++.   ++.+..........+|+|||++|++.......   ..
T Consensus       140 ~~lavdp~~~g~Lyv~d~~---------~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~---~~  204 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQ---------HPTRLIDFEKEY---VSTVYSGLSKVRTICWTHEADSMIITNDQNNN---DR  204 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBT---------EEEEEEETTTTE---EEEEECCCSCEEEEEECTTSSEEEEEECCSCT---TS
T ss_pred             CEEEECCCCCCeEEEEeCC---------CcEEEEECCCCE---EEEEecCCCCcceEEEeCCCCEEEEEeCCCCc---cc
Confidence            3467898 46566655432         679999999887   56665544445667899999988877643221   12


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC-CCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccccccccc
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL  351 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~-DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~  351 (623)
                      ..+++++.++.-  .....+...     ..+..+.++| +|.||+ ++.  +..+|++++++++....+.....    ..
T Consensus       205 ~~v~~~~~~g~~--~~~~~l~~~-----~~p~giavdp~~g~lyv-~d~--~~~~V~~~~~~~~~~~~~~~~~~----~~  270 (430)
T 3tc9_A          205 PNNYILTRESGF--KVITELTKG-----QNCNGAETHPINGELYF-NSW--NAGQVFRYDFTTQETTPLFTIQD----SG  270 (430)
T ss_dssp             EEEEEEEGGGTS--CSEEEEEEC-----SSCCCEEECTTTCCEEE-EET--TTTEEEEEETTTTEEEEEEECSS----SS
T ss_pred             ceEEEEeCCCce--eeeeeeccC-----CCceEEEEeCCCCEEEE-EEC--CCCEEEEEECCCCcEEEEEEcCC----CC
Confidence            345666654431  111222222     2456788999 564554 554  34579999998876644432211    01


Q ss_pred             ccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC
Q 006979          352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (623)
Q Consensus       352 w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~  390 (623)
                      |   ...+.+.   ++++.||++...  ..+|++++.++
T Consensus       271 ~---P~gia~~---pdG~~lyv~d~~--~~~I~~~~~d~  301 (430)
T 3tc9_A          271 W---EFHIQFH---PSGNYAYIVVVN--QHYILRSDYDW  301 (430)
T ss_dssp             C---CEEEEEC---TTSSEEEEEETT--TTEEEEEEEET
T ss_pred             c---ceeEEEc---CCCCEEEEEECC--CCEEEEEeCCc
Confidence            1   1234443   377778887643  34566666543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.28  E-value=0.0024  Score=65.51  Aligned_cols=180  Identities=7%  Similarity=-0.216  Sum_probs=97.3

Q ss_pred             EEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCC--CCceEEEEEEecCCCceeeeEEEcCCCCCc
Q 006979          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP--WDKAELWVGYISENGDVYKRVCVAGFDPTI  299 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p--~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~  299 (623)
                      .+.++|+++++.  +..+.-+..-  ++.+||||++|+......+...  .....|.++|+.+...  ..++..+..+.+
T Consensus        47 ~vsvID~~t~~v--~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--v~~I~v~~~~~~  120 (368)
T 1mda_H           47 ENWVSCAGCGVT--LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADIELPDAPRF  120 (368)
T ss_dssp             EEEEEETTTTEE--EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEEEETTSCSC
T ss_pred             eEEEEECCCCeE--EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE--EEEEECCCcccc
Confidence            899999999873  3444444332  6889999999887753211000  0145699999988743  222222211000


Q ss_pred             --cccCcCceeCCCCcEEEEEeCCCCeeeEEE--EecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEE
Q 006979          300 --VESPTEPKWSSKGELFFVTDRKNGFWNLHK--WIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY  375 (623)
Q Consensus       300 --~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~--~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~  375 (623)
                        ........++|||+.+|+++. .+...+..  +|+.+  .+.+....+             +.+.+   +++..|+..
T Consensus       121 ~~g~~P~~ia~SpDGk~lyVan~-~~~~~v~V~~iD~~t--v~~i~v~~~-------------~~~~p---~g~~~~~~~  181 (368)
T 1mda_H          121 SVGPRVHIIGNCASSACLLFFLF-GSSAAAGLSVPGASD--DQLTKSASC-------------FHIHP---GAAATHYLG  181 (368)
T ss_dssp             CBSCCTTSEEECTTSSCEEEEEC-SSSCEEEEEETTTEE--EEEEECSSC-------------CCCEE---EETTEEECC
T ss_pred             ccCCCcceEEEcCCCCEEEEEcc-CCCCeEEEEEEchhh--ceEEECCCc-------------eEEcc---CCCeEEEEE
Confidence              013568899999996666665 23345656  78766  444432111             01111   555566555


Q ss_pred             EECCeEEEEEEeCCC-----Cceee-----cccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          376 RQNGRSYLGILDDFG-----HSLSL-----LDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       376 ~~~g~~~L~~~d~~~-----~~~~~-----lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ..+|..  ..++.++     +++..     +..+.... . ..+++.+++...     ..++.+|+.+++
T Consensus       182 ~~dg~~--~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-----~~V~viD~~~~~  242 (368)
T 1mda_H          182 SCPASL--AASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-----SSILQGDIPAAG  242 (368)
T ss_dssp             CCTTSC--EEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-----SCCEEEECCSSC
T ss_pred             cCCCCE--EEEECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-----CEEEEEECCCCc
Confidence            455543  3356654     33221     11111111 1 556777777654     578889987654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.27  E-value=0.0041  Score=67.20  Aligned_cols=150  Identities=10%  Similarity=-0.035  Sum_probs=88.5

Q ss_pred             CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCc-eecCCCCCCCCeeecce--eeCCCC-CEEEEEEeccCCCCCCceeE
Q 006979          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADG--IFDPRF-NRYVTVREDRRQDALNSTTE  222 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~-~~Lt~~~~~~~~~~~d~--~~sPdG-~~l~~v~~~~~~~~~~~~~~  222 (623)
                      ..+++++++..+++...++.|.++|+.++ ..+ ..+...    ...+.+.  .|+|+| +.|+-...|         ..
T Consensus       269 v~sv~~s~~~~lasgs~DgtV~lWD~~~~-~~~~~~~~~H----~~~V~sv~~~~s~~g~~~laS~S~D---------~t  334 (524)
T 2j04_B          269 ITTFDFLSPTTVVCGFKNGFVAEFDLTDP-EVPSFYDQVH----DSYILSVSTAYSDFEDTVVSTVAVD---------GY  334 (524)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTBC-SSCSEEEECS----SSCEEEEEEECCTTSCCEEEEEETT---------SE
T ss_pred             EEEEEecCCCeEEEEeCCCEEEEEECCCC-CCceEEeecc----cccEEEEEEEcCCCCCeEEEEeccC---------Ce
Confidence            34566666656677778899999999865 122 223321    2234555  578998 655554443         56


Q ss_pred             EEEEEcCCCCcccceecccC-C-CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcc
Q 006979          223 IVAIALNGQNIQEPKVLVSG-S-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV  300 (623)
Q Consensus       223 L~~idl~~g~~~~~~~l~~~-~-~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~  300 (623)
                      +.+.|+.+++.  +..+... . ..+...+|||||+.|+-...+        ..|.+.|+..+..   ...+.+..    
T Consensus       335 vklWD~~~~~~--~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d--------~tv~lwd~~~~~~---~~~l~gH~----  397 (524)
T 2j04_B          335 FYIFNPKDIAT--TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA--------SSLRAVPSRAAFA---VHPLVSRE----  397 (524)
T ss_dssp             EEEECGGGHHH--HCEEEEECSCCSCCCEEEETTTTEEEEECSS--------SEEEEEETTCTTC---CEEEEECS----
T ss_pred             EEEEECCCCCc--ccccccccccCcccceEeCCCcCeEEEeCCC--------CcEEEEECccccc---ceeeecCC----
Confidence            88889877541  2222211 1 123457899999986644322        2377778876532   23344444    


Q ss_pred             ccCcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979          301 ESPTEPKWSSKGELFFVTDRKNGFWNLH  328 (623)
Q Consensus       301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~  328 (623)
                      ..+..++|+|||++++.... ++.-+||
T Consensus       398 ~~V~sva~Sp~g~~l~Sgs~-Dgtv~lw  424 (524)
T 2j04_B          398 TTITAIGVSRLHPMVLAGSA-DGSLIIT  424 (524)
T ss_dssp             SCEEEEECCSSCCBCEEEET-TTEEECC
T ss_pred             CceEEEEeCCCCCeEEEEEC-CCEEEEE
Confidence            46778899999994444443 4554443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.26  E-value=0.27  Score=54.67  Aligned_cols=52  Identities=10%  Similarity=0.051  Sum_probs=33.2

Q ss_pred             EEEEEEeCCCCcee-ecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          381 SYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       381 ~~L~~~d~~~~~~~-~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ..|+.+|+.++++. ++..+..... .+..+++.+|+ +   .....++.+|+++|+.
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~-g---~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ-G---TADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE-E---CTTSEEEEEETTTCCE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE-E---CCCCcEEEEECCCCce
Confidence            67999999988754 3333322222 23566776554 3   2346899999998874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=97.23  E-value=0.0061  Score=63.08  Aligned_cols=65  Identities=18%  Similarity=0.050  Sum_probs=41.2

Q ss_pred             CEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979          155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (623)
Q Consensus       155 d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~  232 (623)
                      +.++.+...|+.|.++|+.++ .....+...    .......+|+|++..++++....        ..+.++|+.+++
T Consensus       156 ~~~las~s~D~tv~~Wd~~~~-~~~~~~~~~----~~~v~~v~~~p~~~~~l~~~~~d--------~~v~~wd~~t~~  220 (393)
T 4gq1_A          156 EQVIASVGDDCTLIIWRLTDE-GPILAGYPL----SSPGISVQFRPSNPNQLIVGERN--------GNIRIFDWTLNL  220 (393)
T ss_dssp             EEEEEEEETTSEEEEEEEETT-EEEEEEEEC----SSCEEEEEEETTEEEEEEEEETT--------SEEEEEETTCCC
T ss_pred             CCEEEEEECCCeEEEEECCCC-ceeeeecCC----CCCcEEEEECCCCCceEEecCCC--------CEEEEEECCCCc
Confidence            367778778888999998754 122222221    22345688999987655554432        567888887764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.21  E-value=0.0021  Score=67.77  Aligned_cols=119  Identities=13%  Similarity=0.066  Sum_probs=69.1

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC-----Cc-cc---ceecccCCCcccceeeCCC-CCEEEEE
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-----NI-QE---PKVLVSGSDFYAFPRMDPR-GERMAWI  261 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g-----~~-~~---~~~l~~~~~~~~~p~wSPD-G~~la~~  261 (623)
                      .....+|+|||++|++......     ....+.++|+.++     .. ..   .+.+....+.+...+|+|+ ++.|+-.
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs-----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSE-----YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETT-----TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             cccEEEEcCCCCEEEEEEeccC-----CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence            3567889999998875321111     1267888887654     10 00   1111212334566789998 6766655


Q ss_pred             EecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecC
Q 006979          262 EWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (623)
Q Consensus       262 ~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~  333 (623)
                      ..|.        .|.++|+..+.   ......+..    ..+....|+|||+.++.... +|.  |..+|+.
T Consensus       169 s~Dg--------~v~iwD~~~~~---~~~~~~~~~----~~v~~v~wspdg~~lasgs~-dg~--v~iwd~~  222 (434)
T 2oit_A          169 LADG--------SIAVLQVTETV---KVCATLPST----VAVTSVCWSPKGKQLAVGKQ-NGT--VVQYLPT  222 (434)
T ss_dssp             ETTS--------CEEEEEESSSE---EEEEEECGG----GCEEEEEECTTSSCEEEEET-TSC--EEEECTT
T ss_pred             ECCC--------eEEEEEcCCCc---ceeeccCCC----CceeEEEEcCCCCEEEEEcC-CCc--EEEEccC
Confidence            5333        38888988762   222222222    45678899999994444444 354  5566776

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.20  E-value=0.16  Score=55.15  Aligned_cols=82  Identities=10%  Similarity=-0.029  Sum_probs=43.8

Q ss_pred             eeeCCCCCEEEEEEeccCC-------CCCCceeEEEEEEcCCCCcccceecccCC----CcccceeeC---CCCC--EEE
Q 006979          196 GIFDPRFNRYVTVREDRRQ-------DALNSTTEIVAIALNGQNIQEPKVLVSGS----DFYAFPRMD---PRGE--RMA  259 (623)
Q Consensus       196 ~~~sPdG~~l~~v~~~~~~-------~~~~~~~~L~~idl~~g~~~~~~~l~~~~----~~~~~p~wS---PDG~--~la  259 (623)
                      +.++|+...|++...+...       ..+.....|+.+|+++|+.....++....    +....|...   +||+  +++
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v  319 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL  319 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence            4567776666554432210       00011246999999999843323333211    233456544   4786  455


Q ss_pred             EEEecCCCCCCCceEEEEEEecCCC
Q 006979          260 WIEWHHPNMPWDKAELWVGYISENG  284 (623)
Q Consensus       260 ~~~~~~~~~p~~~~~L~v~d~~~~~  284 (623)
                      ++. +.      ...||++|..++.
T Consensus       320 ~~~-~~------~G~l~~lD~~tG~  337 (571)
T 2ad6_A          320 SHI-DR------NGILYTLNRENGN  337 (571)
T ss_dssp             EEE-CT------TSEEEEEETTTCC
T ss_pred             EEe-CC------CcEEEEEECCCCC
Confidence            444 32      3458888887764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=97.17  E-value=0.0076  Score=62.31  Aligned_cols=107  Identities=7%  Similarity=-0.076  Sum_probs=62.7

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCce---ecCCCCCCCCeeecceeeCC--------CCCEEEEEEeccCCCCCCceeEEE
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDP--------RFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~---~Lt~~~~~~~~~~~d~~~sP--------dG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      .++.+...|+.|.++|+.++  ...   .+.... .-...+.+..|+|        ||+.|+-...|         ..+.
T Consensus       102 ~~las~~~d~~v~lw~~~~~--~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D---------~tv~  169 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNE--TIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVGDD---------CTLI  169 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETT--EEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEETT---------SEEE
T ss_pred             CEEEEEeCCCcEEEEECCCC--ccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEECC---------CeEE
Confidence            34555666777888888765  221   121111 1134567888987        88777665554         4577


Q ss_pred             EEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC
Q 006979          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN  283 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~  283 (623)
                      +.|+.++..  ...+..........+|+|++..++.....       ...|.++|+..+
T Consensus       170 ~Wd~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-------d~~v~~wd~~t~  219 (393)
T 4gq1_A          170 IWRLTDEGP--ILAGYPLSSPGISVQFRPSNPNQLIVGER-------NGNIRIFDWTLN  219 (393)
T ss_dssp             EEEEETTEE--EEEEEECSSCEEEEEEETTEEEEEEEEET-------TSEEEEEETTCC
T ss_pred             EEECCCCce--eeeecCCCCCcEEEEECCCCCceEEecCC-------CCEEEEEECCCC
Confidence            778866531  33343444445567899998754444322       224777787765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	623
d1xfda2	258	c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li	5e-11
d2b9va2	385	c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol	3e-10
d1mpxa2	381	c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol	2e-07
d1ufoa_	238	c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu	2e-07
d1vlqa_	322	c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm	3e-07
d2bgra2	258	c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26	5e-07
d2gzsa1	265	c.69.1.38 (A:41-305) Enterobactin and salmochelin	6e-07
d2d81a1	318	c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer	3e-06
d1l7aa_	318	c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill	4e-06
d1ju3a2	347	c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t	5e-06
d1lnsa3	405	c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep	6e-06
d1qfma2	280	c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term	1e-05
d1sfra_	288	c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo	3e-05
d2hu7a2	260	c.69.1.33 (A:322-581) Acylamino-acid-releasing enz	4e-05
d3c8da2	246	c.69.1.2 (A:151-396) Enterochelin esterase, cataly	6e-05
d1r88a_	267	c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu	4e-04
d2jbwa1	360	c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine h	4e-04
d1dqza_	280	c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo	0.002

>d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: DPP6 catalytic domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 5e-11
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 13/154 (8%)

Query: 464 IEFPT-EVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSIQY 519
           +E+   E+           P+      +     PLL+   G P S++      ++     
Sbjct: 3   VEYRDIEIDDYNLPMQILKPAT----FTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVM 58

Query: 520 WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCIT 579
            +S G   V  +  GS   G +    +  R G+++  D       ++     D  R+ + 
Sbjct: 59  VSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVF 118

Query: 580 GGSAGGYTTLAALAFRD-----TFKAGASLYGVS 608
           G   GGY +   L  +      TF  G++L  ++
Sbjct: 119 GKDYGGYLSTYILPAKGENQGQTFTCGSALSPIT 152

>d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: Alpha-amino acid ester hydrolase
species: Acetobacter pasteurianus [TaxId: 438]

 Score = 59.7 bits (143), Expect = 3e-10
 Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 13/148 (8%)

Query: 472 GQKAYAYYYPPSNP-----IYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWA 526
           G K Y     P N      +   +P         +        R +L      +   G+ 
Sbjct: 38  GVKLYTVIVIPKNARNAPILLTRTPYNAKG--RANRVPNALTMREVLPQGDDVFVEGGYI 95

Query: 527 FVDVNYGGSTGYGREFR-----ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
            V  +  G  G   ++         L      +  D      +LV +      R+ +TG 
Sbjct: 96  RVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGS 155

Query: 582 SAGGYTTLAALAFR-DTFKAGASLYGVS 608
           S  G+T + AL       K  A    + 
Sbjct: 156 SYEGFTVVMALLDPHPALKVAAPESPMV 183

>d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: Alpha-amino acid ester hydrolase
species: Xanthomonas citri [TaxId: 346]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 21/139 (15%)

Query: 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG---------GPTSEARGILNLSIQYWTS 522
           G K +     P          +  P+++               +   + +L+     +  
Sbjct: 34  GVKLHTVIVLPKGA-------KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVE 86

Query: 523 RGWAFVDVNYGGSTGYGREFR-----ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 577
            G+  V  +  G  G   ++         L    +    D      +LV +      ++ 
Sbjct: 87  GGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVG 146

Query: 578 ITGGSAGGYTTLAALAFRD 596
           + G S  G+T + AL    
Sbjct: 147 MIGSSYEGFTVVMALTNPH 165

>d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Hypothetical protein TT1662
domain: Hypothetical protein TT1662
species: Thermus thermophilus [TaxId: 274]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 20/125 (16%), Positives = 33/125 (26%), Gaps = 6/125 (4%)

Query: 485 PIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544
            +    PE    LL+  HG   S    IL L +  +  RG+  +  +             
Sbjct: 14  SVLARIPEAPKALLLALHGLQGS-KEHILAL-LPGYAERGFLLLAFDAPRHGEREGPPPS 71

Query: 545 RLLGRWGIVDVNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAALAFRDTFKA 600
               R+                       +     L + GGS G +     LA     + 
Sbjct: 72  SKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRG 131

Query: 601 GASLY 605
             +  
Sbjct: 132 VLAFI 136

>d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetyl xylan esterase-like
domain: Acetyl xylan esterase TM0077
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 32/199 (16%), Positives = 51/199 (25%), Gaps = 41/199 (20%)

Query: 440 DFKVVWSSSPDTLKYKSYFSLPELIEFPTE-----------VPGQKAYAYYYPPSNPIYQ 488
           DF   W  +    +      + E +E   +             GQ+   +   P      
Sbjct: 22  DFDEFWEETLAESEKFPLDPVFERMESHLKTVEAYDVTFSGYRGQRIKGWLLVPKLE--- 78

Query: 489 ASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY---------------- 532
              EEK P +V+  G               +W S G+    ++                 
Sbjct: 79  ---EEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYP 132

Query: 533 -----GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587
                    G+           +      D            + D++R+ I GGS GG  
Sbjct: 133 EGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGI 192

Query: 588 TLAALAFRDTFKAGASLYG 606
            LA  A     KA      
Sbjct: 193 ALAVSALSKKAKALLCDVP 211

>d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: DPP6 catalytic domain-like
domain: Dipeptidyl peptidase IV/CD26, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 10/154 (6%)

Query: 460 LP-ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNL 515
           +P + ++F   +   K +     P +        +K PLL+  + GP S+       LN 
Sbjct: 1   MPSKKLDF-IILNETKFWYQMILPPH----FDKSKKYPLLLDVYAGPCSQKADTVFRLNW 55

Query: 516 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575
           +    ++        +  GS   G +    +  R G  +V D    A      G  D KR
Sbjct: 56  ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 115

Query: 576 LCITGGSAGGYTTLAALAFR-DTFKAGASLYGVS 608
           + I G S GGY T   L      FK G ++  VS
Sbjct: 116 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVS 149

>d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: IroE-like
domain: Enterobactin and salmochelin hydrolase IroE
species: Escherichia coli [TaxId: 562]

 Score = 48.8 bits (115), Expect = 6e-07
 Identities = 28/178 (15%), Positives = 43/178 (24%), Gaps = 25/178 (14%)

Query: 449 PDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE 508
           P+     S F       F +    +    +   P+      +P    P+L    G    +
Sbjct: 1   PNIADKGSVFYHFSATSFDSVDGTRHYRVWTAVPNT----TAPASGYPILYMLDGNAVMD 56

Query: 509 ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 568
            R    L  Q         V V Y  +  +    R             D  S        
Sbjct: 57  -RLDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSG 115

Query: 569 GKA--------------------DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYG 606
           G                      D +R  + G S GG   L +      F++  S   
Sbjct: 116 GSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSYYSASP 173

>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PHB depolymerase-like
domain: Polyhydroxybutyrate depolymerase
species: Penicillium funiculosum [TaxId: 28572]

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 570 KADEKRLCITGGSAGGY-TTLAALAFRDTFKAGASLYGVS 608
             +   + ++G ++GGY      +A+ D F  G  ++   
Sbjct: 7   NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGG 46

>d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetyl xylan esterase-like
domain: Cephalosporin C deacetylase
species: Bacillus subtilis [TaxId: 1423]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 36/194 (18%), Positives = 54/194 (27%), Gaps = 36/194 (18%)

Query: 440 DFKVVWSSS--------PDTLKYKSYFSLP----ELIEFPTEVPGQKAYAYYYPPSNPIY 487
           DF   W  S         +       +         + + +     +   +Y  P     
Sbjct: 23  DFSEFWKLSLEELAKVQAEPDLQPVDYPADGVKVYRLTYKS-FGNARITGWYAVPDK--- 78

Query: 488 QASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 547
               E   P +VK HG   S         +  W   G+A   +   G             
Sbjct: 79  ----EGPHPAIVKYHGYNAS--YDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHG 132

Query: 548 GRWGIVD--------------VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593
              G +                 D       +    + DE R+ +TGGS GG  T+AA A
Sbjct: 133 HALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAA 192

Query: 594 FRDTFKAGASLYGV 607
             D  KA  + Y  
Sbjct: 193 LSDIPKAAVADYPY 206

>d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: Bacterial cocaine esterase N-terminal domain
species: Rhodococcus sp. mb1 [TaxId: 51612]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 8/125 (6%)

Query: 486 IYQASPEEKPPLLVKSH--GGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543
           +Y+   +   P+L+  +        A    + +   +   G+A V  +  G      EF 
Sbjct: 22  LYRPDADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEFV 81

Query: 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 603
             +       D         +       D           G     AA++     KA A 
Sbjct: 82  PHVDDEADAEDTLSWILEQAW------CDGNVGMFGVSYLGVTQWQAAVSGVGGLKAIAP 135

Query: 604 LYGVS 608
               +
Sbjct: 136 SMASA 140

>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 46.5 bits (109), Expect = 6e-06
 Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 23/146 (15%)

Query: 481 PPSNPIYQASPEEKPPLLVKS---HGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537
                + Q  P++      +       P     G       Y+ +RG+A + V   G+  
Sbjct: 90  SHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRS 149

Query: 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD--------------EKRLCITGGSA 583
                            +    +   +L G  +A                 ++ +TG S 
Sbjct: 150 SDGFQTS-----GDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSY 204

Query: 584 GGYTTLAALAF-RDTFKAGASLYGVS 608
            G     A     +  +   +  G+S
Sbjct: 205 LGTMAYGAATTGVEGLELILAEAGIS 230

>d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Prolyl oligopeptidase, C-terminal domain
domain: Prolyl oligopeptidase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 25/160 (15%), Positives = 44/160 (27%), Gaps = 6/160 (3%)

Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
             I +P++  G K   +             +   P  +  +GG         ++S   + 
Sbjct: 8   VQIFYPSK-DGTKIPMFIVHKKG----IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFV 62

Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC-CSCATFLVGSGKADEKRLCITG 580
                 + V      G   E   +        +  D     A +L+  G    KRL I G
Sbjct: 63  RHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTING 122

Query: 581 GSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELWSI 620
           GS GG         R             + ++   +    
Sbjct: 123 GSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 162

>d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Mycobacterial antigens
domain: Antigen 85a
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 7/133 (5%)

Query: 485 PIYQASPEEKPPLLVKSHGGP-TSEARGILNLS--IQYWTSRGWAFVDVNYGGSTGYGRE 541
            +   S     P L    G     +  G    +   +++   G + V    G S+ Y   
Sbjct: 24  KVQFQSGGANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDW 83

Query: 542 FRERLLGRWGIVDVNDC---CSCATFLVGSGKADEKRLCITGGSAGGY-TTLAALAFRDT 597
           ++             +         +L  +         + G S         A+     
Sbjct: 84  YQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQ 143

Query: 598 FKAGASLYGVSIP 610
           F    ++ G+  P
Sbjct: 144 FVYAGAMSGLLDP 156

>d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acylamino-acid-releasing enzyme, C-terminal donain
domain: Acylamino-acid-releasing enzyme, C-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 449 PDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE 508
           P+ L+     +   L+   +   G +   Y                 P +V  HGGP +E
Sbjct: 2   PEDLRRS--IAGSRLVWVESF-DGSRVPTYVLES------GRAPTPGPTVVLVHGGPFAE 52

Query: 509 ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC 561
                +       + G+  V  NY GSTGYG E+R +++G     ++ D  + 
Sbjct: 53  DSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAA 105

>d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Enterochelin esterase, catalytic domain
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

 Score = 42.6 bits (99), Expect = 6e-05
 Identities = 23/152 (15%), Positives = 41/152 (26%), Gaps = 8/152 (5%)

Query: 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 520
            + I + +E        + +   +        E+ PL V   G   +++  +    +   
Sbjct: 15  AKEIIWKSERLKNSRRVWIFTTGD-----VTAEERPLAVLLDGEFWAQSMPV-WPVLTSL 68

Query: 521 TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCIT 579
           T R      V               L         V         ++        R  + 
Sbjct: 69  THRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVA 128

Query: 580 GGSAGGYTTLAA-LAFRDTFKAGASLYGVSIP 610
           G S GG + L A L + + F    S  G    
Sbjct: 129 GQSFGGLSALYAGLHWPERFGCVLSQSGSYWW 160

>d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Mycobacterial antigens
domain: Antigen pt51/mpb51
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 8/121 (6%)

Query: 494 KPPLLVKSHG-GPTSEARGILNLS--IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550
            P  +          +    +     +     +G + V    GG+      + +    +W
Sbjct: 26  GPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPA-GGAYSMYTNWEQDGSKQW 84

Query: 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA-ALAFRDTFKAGASLYGVSI 609
                 +       L  +           G + GGY  +A A    D F    S+ G   
Sbjct: 85  DTFLSAELPDW---LAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLY 141

Query: 610 P 610
           P
Sbjct: 142 P 142

>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 360

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: 2,6-dihydropseudooxynicotine hydrolase-like
domain: 2,6-dihydropseudooxynicotine hydrolase
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 29/167 (17%), Positives = 39/167 (23%), Gaps = 18/167 (10%)

Query: 453 KYKSYFSLP-ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG 511
           K     S P E  E   +        Y   P  P          P ++   G  ++  + 
Sbjct: 97  KAAPLLSPPAERHELVVDG--IPMPVYVRIPEGP-------GPHPAVIMLGGLEST--KE 145

Query: 512 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571
                      RG A    +  G        R           V D       L      
Sbjct: 146 ESFQMENLVLDRGMATATFDGPGQGEMFEYKRIAGDYEKYTSAVVDL------LTKLEAI 199

Query: 572 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEELW 618
               + + G S GG   L + A      A  S  G S       E  
Sbjct: 200 RNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDYWDLETP 246

>d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Mycobacterial antigens
domain: Antigen 85c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 25/151 (16%), Positives = 40/151 (26%), Gaps = 12/151 (7%)

Query: 471 PGQKAYAYYYPPSN----PIYQASPEEKPPLLVKSHG-GPTSEARGILNLS--IQYWTSR 523
           PG     Y   PS      I        P  +    G     +  G    +   + +   
Sbjct: 2   PGLP-VEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQS 60

Query: 524 GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC---CSCATFLVGSGKADEKRLCITG 580
           G + +    G S+ Y   ++             +         +L  +           G
Sbjct: 61  GLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVG 120

Query: 581 GSAGGYTTLA-ALAFRDTFKAGASLYGVSIP 610
            S  G + L  A  +   F   ASL G   P
Sbjct: 121 LSMSGGSALILAAYYPQQFPYAASLSGFLNP 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	623
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.88
d1xfda2	258	Dipeptidyl aminopeptidase-like protein 6, DPP6, C-	99.85
d2hu7a2	260	Acylamino-acid-releasing enzyme, C-terminal donain	99.84
d2bgra2	258	Dipeptidyl peptidase IV/CD26, C-terminal domain {P	99.83
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.82
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.81
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.79
d1mpxa2	381	Alpha-amino acid ester hydrolase {Xanthomonas citr	99.71
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.69
d1ju3a2	347	Bacterial cocaine esterase N-terminal domain {Rhod	99.68
d2b9va2	385	Alpha-amino acid ester hydrolase {Acetobacter past	99.67
d2jbwa1	360	2,6-dihydropseudooxynicotine hydrolase {Arthrobact	99.66
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.63
d1thta_	302	Myristoyl-ACP-specific thioesterase {Vibrio harvey	99.6
d1vlqa_	322	Acetyl xylan esterase TM0077 {Thermotoga maritima	99.6
d1l7aa_	318	Cephalosporin C deacetylase {Bacillus subtilis [Ta	99.58
d1qfma2	280	Prolyl oligopeptidase, C-terminal domain {Pig (Sus	99.55
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.5
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.49
d2pbla1	261	Uncharacterized protein TM1040_2492 {Silicibacter	99.48
d1jfra_	260	Lipase {Streptomyces exfoliatus [TaxId: 1905]}	99.47
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.47
d1sfra_	288	Antigen 85a {Mycobacterium tuberculosis [TaxId: 17	99.45
d1lnsa3	405	X-Prolyl dipeptidyl aminopeptidase PepX, middle do	99.44
d2fuka1	218	XC6422 protein {Xanthomonas campestris [TaxId: 339	99.42
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.41
d1jkma_	358	Carboxylesterase {Bacillus subtilis, brefeldin A e	99.41
d1dina_	233	Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI	99.39
d1wb4a1	273	Feruloyl esterase domain of the cellulosomal xylan	99.38
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.34
d1jjia_	311	Carboxylesterase {Archaeon Archaeoglobus fulgidus	99.31
d1lzla_	317	Heroin esterase {Rhodococcus sp. [TaxId: 1831]}	99.31
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	99.31
d2gzsa1	265	Enterobactin and salmochelin hydrolase IroE {Esche	99.3
d1r88a_	267	Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta	99.29
d3c8da2	246	Enterochelin esterase, catalytic domain {Shigella	99.27
d1dqza_	280	Antigen 85c {Mycobacterium tuberculosis [TaxId: 17	99.26
d1imja_	208	Ccg1/TafII250-interacting factor B (Cib) {Human (H	99.26
d1u4na_	308	Carboxylesterase {Alicyclobacillus acidocaldarius	99.26
d1jjfa_	255	Feruloyl esterase domain of the cellulosomal xylan	99.24
d2i3da1	218	Hypothetical protein Atu1826 {Agrobacterium tumefa	99.21
d1vkha_	263	Putative serine hydrolase Ydr428c {Baker's yeast (	99.18
d1k8qa_	377	Gastric lipase {Dog (Canis familiaris) [TaxId: 961	99.17
d1mtza_	290	Tricorn interacting factor F1 {Archaeon Thermoplas	99.15
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.13
d1ufoa_	238	Hypothetical protein TT1662 {Thermus thermophilus	99.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.13
d3b5ea1	209	Uncharacterized protein Mll8374 {Mesorhizobium lot	99.1
d2h1ia1	202	Carboxylesterase {Bacillus cereus [TaxId: 1396]}	99.1
d1b6ga_	310	Haloalkane dehalogenase {Xanthobacter autotrophicu	99.08
d1q0ra_	297	Aclacinomycin methylesterase RdmC {Streptomyces pu	99.08
d1zd3a2	322	Mammalian epoxide hydrolase, C-terminal domain {Hu	99.07
d1a88a_	275	Chloroperoxidase L {Streptomyces lividans [TaxId:	98.99
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.99
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.97
d1ehya_	293	Bacterial epoxide hydrolase {Agrobacterium radioba	98.96
d1a8qa_	274	Bromoperoxidase A1 {Streptomyces aureofaciens [Tax	98.96
d1c4xa_	281	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas	98.96
d1azwa_	313	Proline iminopeptidase {Xanthomonas campestris, pv	98.94
d1bn7a_	291	Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1	98.92
d1tqha_	242	Carboxylesterase Est {Bacillus stearothermophilus	98.9
d1r3da_	264	Hypothetical protein VC1974 {Vibrio cholerae [TaxI	98.9
d1va4a_	271	Arylesterase {Pseudomonas fluorescens [TaxId: 294]	98.89
d1hkha_	279	Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]	98.87
d1brta_	277	Bromoperoxidase A2 {Streptomyces aureofaciens [Tax	98.87
d1xkla_	258	Salicylic acid-binding protein 2 (SABP2) {Common t	98.86
d1a8sa_	273	Chloroperoxidase F {Pseudomonas fluorescens [TaxId	98.85
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.85
d3c70a1	256	Hydroxynitrile lyase {Rubber tree (Hevea brasilien	98.84
d2h7ca1	532	Mammalian carboxylesterase (liver carboxylesterase	98.84
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.83
d1qe3a_	483	Thermophilic para-nitrobenzyl esterase (PNB estera	98.83
d2rhwa1	283	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas	98.83
d1uk8a_	271	Meta-cleavage product hydrolase CumD {Pseudomonas	98.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.8
d1tcaa_	317	Triacylglycerol lipase {Yeast (Candida antarctica)	98.79
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.78
d1uxoa_	186	Hypothetical protein YdeN {Bacillus subtilis [TaxI	98.78
d1mj5a_	298	Haloalkane dehalogenase {Sphingomonas paucimobilis	98.78
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.77
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.76
d1j1ia_	268	Meta cleavage compound hydrolase CarC {Janthinobac	98.76
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.76
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.75
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.74
d1fj2a_	229	Acyl protein thioesterase 1 {Human (Homo sapiens)	98.74
d1cvla_	319	Lipase {Chromobacterium viscosum [TaxId: 42739]}	98.72
d1thga_	544	Type-B carboxylesterase/lipase {Fungus (Geotrichum	98.72
d1m33a_	256	Biotin biosynthesis protein BioH {Escherichia coli	98.71
d1llfa_	534	Type-B carboxylesterase/lipase {Candida cylindrace	98.71
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.7
d1pv1a_	299	Hypothetical esterase YJL068C {Baker's yeast (Sacc	98.69
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.69
d1ukca_	517	Esterase EstA {Aspergillus niger [TaxId: 5061]}	98.67
d1ispa_	179	Lipase A {Bacillus subtilis [TaxId: 1423]}	98.67
d1pjaa_	268	Palmitoyl protein thioesterase 2 {Human (Homo sapi	98.67
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.65
d1ex9a_	285	Lipase {Pseudomonas aeruginosa [TaxId: 287]}	98.63
d1wm1a_	313	Proline aminopeptidase {Serratia marcescens [TaxId	98.6
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.6
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.6
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.59
d1dx4a_	571	Acetylcholinesterase {Fruit fly (Drosophila melano	98.58
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.57
d1p0ia_	526	Butyryl cholinesterase {Human (Homo sapiens) [TaxI	98.56
d2bcea_	579	Bile-salt activated lipase (cholesterol esterase)	98.55
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.54
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.51
d2ha2a1	542	Acetylcholinesterase {Mouse (Mus musculus) [TaxId:	98.5
d1ea5a_	532	Acetylcholinesterase {Pacific electric ray (Torped	98.5
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.48
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.48
d1qo7a_	394	Bacterial epoxide hydrolase {Aspergillus niger [Ta	98.48
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.47
d2r8ba1	203	Uncharacterized protein Atu2452 {Agrobacterium tum	98.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.41
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.39
d1auoa_	218	Carboxylesterase {Pseudomonas fluorescens [TaxId:	98.39
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.39
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.38
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.37
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.33
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	98.31
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.27
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.21
d1qlwa_	318	A novel bacterial esterase {Alcaligenes sp. [TaxId	98.21
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.21
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.16
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.12
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.11
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.11
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	98.08
d1xkta_	286	Fatty acid synthase {Human (Homo sapiens) [TaxId:	98.07
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.0
d1jmkc_	230	Surfactin synthetase, SrfA {Bacillus subtilis [Tax	97.98
d2dsta1	122	Hypothetical protein TTHA1544 {Thermus thermophilu	97.9
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.89
d1rp1a2	337	Pancreatic lipase, N-terminal domain {Dog (Canis f	97.88
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.86
d2b61a1	357	Homoserine O-acetyltransferase {Haemophilus influe	97.85
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.84
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.81
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.81
d2vata1	376	Acetyl-CoA:deacetylcephalosporin C acetyltransfera	97.77
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.74
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.71
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.67
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.6
d1bu8a2	338	Pancreatic lipase, N-terminal domain {Rat (Rattus	97.59
d2pl5a1	362	Homoserine O-acetyltransferase {Leptospira interro	97.58
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.57
d2h7xa1	283	Picromycin polyketide synthase {Streptomyces venez	97.41
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	97.31
d1ei9a_	279	Palmitoyl protein thioesterase 1 {Cow (Bos taurus)	97.27
d1mo2a_	255	Erythromycin polyketide synthase {Saccharopolyspor	97.19
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.18
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.99
d2d81a1	318	Polyhydroxybutyrate depolymerase {Penicillium funi	96.99
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.98
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.87
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.8
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.78
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.77
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.6
g1wht.1	409	Serine carboxypeptidase II {Wheat (Triticum vulgar	96.43
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.35
d1ivya_	452	Human 'protective protein', HPP {Human (Homo sapie	95.77
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.66
d1ku0a_	388	Lipase L1 {Bacillus stearothermophilus [TaxId: 142	95.6
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.39
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.28
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.21
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.03
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	93.71
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.41
g1gxs.1	425	Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T	93.32
d1wpxa1	421	Serine carboxypeptidase II {Baker's yeast (Sacchar	92.47
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.23
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.68
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.11
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.18
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	87.59
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	87.48
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	87.41
d1ac5a_	483	Serine carboxypeptidase II {Baker's yeast (Sacchar	87.23
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	85.22
d1lgya_	265	Triacylglycerol lipase {Rhizopus niveus [TaxId: 48	82.07
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	81.76
d1tiba_	269	Triacylglycerol lipase {Thermomyces lanuginosus, f	81.29
d1tiaa_	271	Triacylglycerol lipase {Penicillium camembertii [T	81.09
d1uwca_	261	Feruloyl esterase A {Aspergillus niger [TaxId: 506	80.84

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-20  Score=198.88  Aligned_cols=324  Identities=12%  Similarity=0.059  Sum_probs=206.9

Q ss_pred             CCcCCHHHHhccCCcc--CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEe
Q 006979           76 KSPLTADVVSGASKRL--GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF  153 (623)
Q Consensus        76 ~s~~t~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s  153 (623)
                      +.+||+|.++...-..  -.+.|.+++.+++.+    ++|.  |+.++..++ +.+.++...     .+..+....|.++
T Consensus         2 ~~~~tle~~~~~~~~~~~~~~~W~~~~~~~~~~----~~g~--i~~~~~~~~-~~~~l~~~~-----~~~~~~~~~~~~S   69 (465)
T d1xfda1           2 KKKVTVEDLFSEDFKIHDPEAKWISDTEFIYRE----QKGT--VRLWNVETN-TSTVLIEGK-----KIESLRAIRYEIS   69 (465)
T ss_dssp             CCCCCHHHHTCTTTCCCCCCCCBSSSSCBCCCC----SSSC--EEEBCGGGC-CCEEEECTT-----TTTTTTCSEEEEC
T ss_pred             CCceeHHHHhCCccccCCCCCEEeCCCcEEEEe----CCCc--EEEEECCCC-CEEEEEcCc-----cccccccceeEEC
Confidence            4578999998753221  257787633333221    1243  566665543 444444322     1123456678888


Q ss_pred             CC--EEEEEeCC--------CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          154 GD--TVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       154 ~d--~l~f~~~~--------~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      +|  .|+|..+.        .+.+|++|+.++  ..++|+... ........+.|||||++|+|++.          ++|
T Consensus        70 pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~--~~~~l~~~~-~~~~~l~~~~wSPDG~~iafv~~----------~nl  136 (465)
T d1xfda1          70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPPE-VSNAKLQYAGWGPKGQQLIFIFE----------NNI  136 (465)
T ss_dssp             TTSSEEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCCTT-CCSCCCSBCCBCSSTTCEEEEET----------TEE
T ss_pred             CCCCeEEEEEcccceeEeeccccEEEEEccCC--ceeeccCcc-CCccccceeeeccCCceEEEEec----------ceE
Confidence            87  67776432        356899999988  778886541 11234456889999999999986          569


Q ss_pred             EEEEcCCCCcccceecccCC-Cc------------------ccceeeCCCCCEEEEEEecCCCC----------------
Q 006979          224 VAIALNGQNIQEPKVLVSGS-DF------------------YAFPRMDPRGERMAWIEWHHPNM----------------  268 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~-~~------------------~~~p~wSPDG~~la~~~~~~~~~----------------  268 (623)
                      |+++..++.   ..+++.+. +.                  .....|||||++|||.+.|+..+                
T Consensus       137 ~~~~~~~~~---~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~  213 (465)
T d1xfda1         137 YYCAHVGKQ---AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV  213 (465)
T ss_dssp             EEESSSSSC---CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred             EEEecCCCc---eEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccccccccee
Confidence            999998876   55565332 11                  12345999999999998766542                


Q ss_pred             ----------CCCceEEEEEEecCCCceeeeEEEcCCC-CCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCe
Q 006979          269 ----------PWDKAELWVGYISENGDVYKRVCVAGFD-PTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       269 ----------p~~~~~L~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                                +....+|+++|++++..  ......... .....++..+.|++|++ +++..++......|+.+|+.+++
T Consensus       214 ~~~~Yp~~G~~np~~~l~v~d~~~~~~--~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         214 KPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             EEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             eeeeccccCCCCCceeEEEEecCCCcE--EEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc
Confidence                      22345788999876632  111111111 01114566789999999 45555665566789999999999


Q ss_pred             EEEEeecccccccccccccCc-ceeEEeecCCCCEEEE--EEEECCeEEEEEEe-------CCCCceeecccCCcceEee
Q 006979          337 VLAIYSLDAEFSRPLWVFGIN-SYEIIQSHGEKNLIAC--SYRQNGRSYLGILD-------DFGHSLSLLDIPFTDIDNI  406 (623)
Q Consensus       337 ~~~l~~~~~~~~~~~w~~~~~-~~~~l~~s~~~~~l~~--~~~~~g~~~L~~~d-------~~~~~~~~lt~~~~~v~~~  406 (623)
                      .+.+..+    ....|..... ...+.   ++|+.++|  .++++|+.|+|++.       ..++..++||.+.+.|..+
T Consensus       292 ~~~~~~e----~~~~wv~~~~~~p~~~---~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i  364 (465)
T d1xfda1         292 CTKKHED----ESEAWLHRQNEEPVFS---KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI  364 (465)
T ss_dssp             EEEEEEE----ECSSCCCCCCCCCEEC---TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred             EEEEEEE----cCCceEeccCCceeEc---cCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEE
Confidence            8887755    2234543222 22333   37776655  45678888888874       3456678999998887654


Q ss_pred             ---eecCCEEEEEEec-CCCCCeEEEEEcCCCcc
Q 006979          407 ---TLGNDCLFVEGAS-GVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       407 ---~~~~~~~~~~~~s-~~~~~~ly~~~l~~~~~  436 (623)
                         +.+++.|||++.. .....+||+++++++..
T Consensus       365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~  398 (465)
T d1xfda1         365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN  398 (465)
T ss_dssp             EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred             EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc
Confidence               7788999998853 34456899999998753

>d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: DPP6 catalytic domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9e-22  Score=192.73  Aligned_cols=136  Identities=21%  Similarity=0.277  Sum_probs=118.8

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc-CcC--CHHhHHHHcCceEEEEECCCCCCCCchhHHHhhc
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GIL--NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL  547 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~-~~~--~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~  547 (623)
                      ||.+|+++++.|++  +++  ++++|+||++||||+.... ..+  ....++|+++||+|+.+||||++++|.++.....
T Consensus        11 dg~~l~~~l~~P~~--~~~--~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~   86 (258)
T d1xfda2          11 DDYNLPMQILKPAT--FTD--TTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVR   86 (258)
T ss_dssp             TTEEECCBEEBCSS--CCS--SSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTT
T ss_pred             CCeEEEEEEEECCC--cCC--CCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhh
Confidence            79999999999988  544  7889999999999765442 233  3567789999999999999999999999999888


Q ss_pred             cCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cC----CCceeEEEecccCCCH
Q 006979          548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AF----RDTFKAGASLYGVSIP  610 (623)
Q Consensus       548 ~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~----~~~f~a~v~~~g~~d~  610 (623)
                      .+++..+.+|+.++++|+.+++.+|++||+|+|+|+||++++.++ ..    ++.|++.+..+|+..+
T Consensus        87 ~~~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T d1xfda2          87 RRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDF  154 (258)
T ss_dssp             TCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCT
T ss_pred             ccchhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceee
Confidence            999999999999999999999999999999999999999999887 43    3578898888888765

>d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acylamino-acid-releasing enzyme, C-terminal donain
domain: Acylamino-acid-releasing enzyme, C-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.84  E-value=8.3e-21  Score=186.01  Aligned_cols=149  Identities=30%  Similarity=0.360  Sum_probs=135.1

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCC
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY  538 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~  538 (623)
                      ...+.|.|++. ||.+|+++++.|++.      .++.|+||++|||+++.....|...++.|+++||+|+.+|+||.+++
T Consensus        10 ~~~~~v~~~s~-dG~~i~~~l~~p~~~------~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~~   82 (260)
T d2hu7a2          10 AGSRLVWVESF-DGSRVPTYVLESGRA------PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGY   82 (260)
T ss_dssp             EEEEEEEEECT-TSCEEEEEEEEETTS------CSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSSS
T ss_pred             CceEEEEEECC-CCCEEEEEEEeCCCC------CCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeecccc
Confidence            45678899998 999999999999873      46789999999998888778888999999999999999999999999


Q ss_pred             chhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhhh
Q 006979          539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~~  616 (623)
                      |..+......+++..+++|+.++++|+.+++  |+++++|+|+|+||++++.++ .+++.|+|+++.+|+.|+..+...
T Consensus        83 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~  159 (260)
T d2hu7a2          83 GEEWRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYEL  159 (260)
T ss_dssp             CHHHHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHT
T ss_pred             ccccccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhcc
Confidence            9999998888899999999999999999985  678999999999999999988 899999999999999999876554

>d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: DPP6 catalytic domain-like
domain: Dipeptidyl peptidase IV/CD26, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.83  E-value=2.3e-20  Score=182.52  Aligned_cols=147  Identities=25%  Similarity=0.294  Sum_probs=130.1

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC---cCCHHhHHHHcCceEEEEECCCCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYWTSRGWAFVDVNYGGSTG  537 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~---~~~~~~~~~a~~G~~v~~~d~rGs~~  537 (623)
                      .+++.|... +|.++.++++.|++  |++  ++++|+||++||||++....   .+.....+++++||+|+.+||||+++
T Consensus         3 ~~~~~~~~~-~~~~~~~~l~lP~~--~~~--~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~   77 (258)
T d2bgra2           3 SKKLDFIIL-NETKFWYQMILPPH--FDK--SKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGY   77 (258)
T ss_dssp             EEEEEEEEE-TTEEEEEEEEECTT--CCT--TSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSS
T ss_pred             ceeEEEEEe-CCcEEEEEEEECCC--cCC--CCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCC
Confidence            467888887 99999999999998  655  78999999999987654433   33456777889999999999999999


Q ss_pred             CchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979          538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       538 ~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                      ++..|.+...++++..+.+|+.++++++.+++.+|++||+++|+|+||.+++.++ .+|++++++++..+..+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (258)
T d2bgra2          78 QGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEY  153 (258)
T ss_dssp             SCHHHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGG
T ss_pred             cchHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeeccccccc
Confidence            9999999999999999999999999999999999999999999999999999988 78999999999998876543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.3e-18  Score=168.56  Aligned_cols=243  Identities=13%  Similarity=0.126  Sum_probs=177.3

Q ss_pred             EEEEEeCCCC-----cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 006979          156 TVIFSNYKDQ-----RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG  230 (623)
Q Consensus       156 ~l~f~~~~~~-----~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~  230 (623)
                      +|+|+...++     +||++|.+++  .+++|+..    ......|+|||||++|+|++.....      ..++.++..+
T Consensus         5 ~iay~~~~~~~~~~~~l~i~d~dG~--~~~~l~~~----~~~~~sP~wSPDGk~IAf~~~~~~~------~~~~~~~~~~   72 (269)
T d2hqsa1           5 RIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESGR------SALVIQTLAN   72 (269)
T ss_dssp             EEEEEEECSSSSCCEEEEEEETTSC--SCEEEEEE----SSCEEEEEECTTSSEEEEEECTTSS------CEEEEEETTT
T ss_pred             eEEEEEEeCCCCceEEEEEEcCCCC--CcEEEecC----CCceeeeEECCCCCEEEEEEeeccC------cceeeeeccc
Confidence            5666654432     5999999876  78888875    3445679999999999999875533      6799999998


Q ss_pred             CCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC
Q 006979          231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS  310 (623)
Q Consensus       231 g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~  310 (623)
                      +.   .++++...+....+.|||||++|++......     ...+........    .........    .....+.|++
T Consensus        73 ~~---~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~  136 (269)
T d2hqsa1          73 GA---VRQVASFPRHNGAPAFSPDGSKLAFALSKTG-----SLNLYVMDLASG----QIRQVTDGR----SNNTEPTWFP  136 (269)
T ss_dssp             CC---EEEEECCSSCEEEEEECTTSSEEEEEECTTS-----SCEEEEEETTTC----CEEECCCCS----SCEEEEEECT
T ss_pred             Cc---eeEEeeeecccccceecCCCCeeeEeeecCC-----ccceeecccccc----cceeeeecc----cccccccccc
Confidence            87   6777766666667899999999999875432     334444443333    222222222    3445778999


Q ss_pred             CCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC
Q 006979          311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (623)
Q Consensus       311 DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~  389 (623)
                      +++ +++.... .|..+|+..+++++...+++........+.|++            +++.+++...+.+..+|++++..
T Consensus       137 ~~~~~~~~~~~-~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sp------------dg~~~~~~~~~~~~~~i~~~~~~  203 (269)
T d2hqsa1         137 DSQNLAFTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQDLA  203 (269)
T ss_dssp             TSSEEEEEECT-TSSCEEEEEETTSSCCEECCCSSSEEEEEEECT------------TSSEEEEEEECSSCEEEEEEETT
T ss_pred             ccccceecccc-cCCceEeeeecccccceeeeccccccccccccc------------ccceeEEEeecCCceeeeEeecc
Confidence            988 7777776 788899999998888777775544455556654            89999999999999999999999


Q ss_pred             CCceeecccCCcceEe-eeecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979          390 GHSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       390 ~~~~~~lt~~~~~v~~-~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                      ++..+.+......... +++||++|+|+... ....+||+++++++..++|+
T Consensus       204 ~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l~~~~~dg~~~~~lt  254 (269)
T d2hqsa1         204 TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGRFKARLP  254 (269)
T ss_dssp             TCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSCCEEECC
T ss_pred             cccceEeecCccccceEECCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEEe
Confidence            8877666554444333 38999999998753 44568999999998876655

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.81  E-value=2.1e-17  Score=175.68  Aligned_cols=325  Identities=10%  Similarity=0.074  Sum_probs=198.9

Q ss_pred             CcCCHHHHhccCCc--cCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeC
Q 006979           77 SPLTADVVSGASKR--LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG  154 (623)
Q Consensus        77 s~~t~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~  154 (623)
                      .++|+|.++...-.  .-.+.|.+++.+++.+     ++.  ++.++..++ +...++... ...  -+..++.++.+++
T Consensus         3 ~~~t~~~~~~~~~~~~~~~~~W~~d~~~~~~~-----~~~--~~~~~~~t~-~~~~~~~~~-~~~--~~~~~i~~~~~Sp   71 (470)
T d2bgra1           3 KTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQ-----ENN--ILVFNAEYG-NSSVFLENS-TFD--EFGHSINDYSISP   71 (470)
T ss_dssp             EECCHHHHHHTCSCCCCCCCEECSSSEEEEES-----SSC--EEEEETTTC-CEEEEECTT-TTT--TSSSCCCEEEECT
T ss_pred             CcEEhHHhhCCceeccccCCEeCCCCEEEEEc-----CCc--EEEEECCCC-CEEEEEchh-hhh--hccCccceeEECC
Confidence            35789999876433  3478898744433322     244  444454433 444444321 111  0122356777887


Q ss_pred             C--EEEEEeCC--------CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          155 D--TVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       155 d--~l~f~~~~--------~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      |  .|+|....        .+.+|++|+.++  ..++++..    ......+.|||||++|+|++.          ..||
T Consensus        72 Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~--~~~~l~~~----~~~~~~~~~SPDG~~ia~~~~----------~~l~  135 (470)
T d2bgra1          72 DGQFILLEYNYVKQWRHSYTASYDIYDLNKR--QLITEERI----PNNTQWVTWSPVGHKLAYVWN----------NDIY  135 (470)
T ss_dssp             TSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECCSSCC----CTTEEEEEECSSTTCEEEEET----------TEEE
T ss_pred             CCCEEEEEECCcceeeeccCceEEEEECCCC--cccccccC----CccccccccccCcceeeEeec----------ccce
Confidence            7  67776421        246899999987  67777765    344567899999999999865          5699


Q ss_pred             EEEcCCCCcccceecccCC-------------------CcccceeeCCCCCEEEEEEecCCCC-----------------
Q 006979          225 AIALNGQNIQEPKVLVSGS-------------------DFYAFPRMDPRGERMAWIEWHHPNM-----------------  268 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~-------------------~~~~~p~wSPDG~~la~~~~~~~~~-----------------  268 (623)
                      ++++.+++   ..+++...                   .......|||||++|+|.+.+...+                 
T Consensus       136 ~~~~~~g~---~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~  212 (470)
T d2bgra1         136 VKIEPNLP---SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPK  212 (470)
T ss_dssp             EESSTTSC---CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCE
T ss_pred             EEECCCCc---eeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCe
Confidence            99999887   55554321                   1123456999999999998765532                 


Q ss_pred             -----------CCCceEEEEEEecCCCcee--eeEEEcC----CCCCccccCcCceeCCCCc-EEEEEeCCCCe--eeEE
Q 006979          269 -----------PWDKAELWVGYISENGDVY--KRVCVAG----FDPTIVESPTEPKWSSKGE-LFFVTDRKNGF--WNLH  328 (623)
Q Consensus       269 -----------p~~~~~L~v~d~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~--~~L~  328 (623)
                                 +.....++++++.++....  .......    ...+  .++..+.|.++++ +++..++..+.  ..++
T Consensus       213 ~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~  290 (470)
T d2bgra1         213 TVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD--HYLCDVTWATQERISLQWLRRIQNYSVMDIC  290 (470)
T ss_dssp             EEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSC--EEEEEEEEEETTEEEEEEEESSTTEEEEEEE
T ss_pred             eeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCC--ceEEEEEEcCCCceeEEEeeccCCceEEEEE
Confidence                       1122345666666542210  0000000    0001  3456789999998 44444553333  3567


Q ss_pred             EEecCCCeEEEEeec-ccccccccccccCc--ceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEe
Q 006979          329 KWIESNNEVLAIYSL-DAEFSRPLWVFGIN--SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN  405 (623)
Q Consensus       329 ~~d~~~~~~~~l~~~-~~~~~~~~w~~~~~--~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~  405 (623)
                      .+|..++..+.+... ........|.....  ...+..  ..++.+++.++++|..|||+++.+++..++|+.+.+.+..
T Consensus       291 ~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~  368 (470)
T d2bgra1         291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL--DGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG  368 (470)
T ss_dssp             EEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT--TSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEE
T ss_pred             EecCCCCcEEEEEEEeeeeeeccceeecccCCCceeee--cCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEE
Confidence            778888887776521 11112223332211  112221  1334567888899999999999999999999998888776


Q ss_pred             e-eecCCEEEEEEecC---CCCCeEEEEEcCCCc
Q 006979          406 I-TLGNDCLFVEGASG---VEPSSVAKVTLDDHK  435 (623)
Q Consensus       406 ~-~~~~~~~~~~~~s~---~~~~~ly~~~l~~~~  435 (623)
                      + ..+++.+||++...   ....+||+++++++.
T Consensus       369 ~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~  402 (470)
T d2bgra1         369 IEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYT  402 (470)
T ss_dssp             EEEECSSEEEEEESCGGGCTTCBEEEEEETTCTT
T ss_pred             EEEECCCEEEEEEecCCCCcceEEEEEEECCCCC
Confidence            6 77888999987532   234579999998754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=1.7e-17  Score=162.90  Aligned_cols=244  Identities=14%  Similarity=0.056  Sum_probs=163.3

Q ss_pred             EEe--CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          151 RIF--GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       151 ~~s--~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      .++  +++|+|+.  .++||++|++++  .+++||..    ......|+|||||++|+|++......   ...+||++++
T Consensus         7 sPdi~G~~v~f~~--~~dl~~~d~~~g--~~~~Lt~~----~~~~~~p~~SPDG~~iaf~~~~~~~~---~~~~i~~~~~   75 (281)
T d1k32a2           7 NPDIHGDRIIFVC--CDDLWEHDLKSG--STRKIVSN----LGVINNARFFPDGRKIAIRVMRGSSL---NTADLYFYNG   75 (281)
T ss_dssp             EEEEETTEEEEEE--TTEEEEEETTTC--CEEEEECS----SSEEEEEEECTTSSEEEEEEEESTTC---CEEEEEEEET
T ss_pred             CCCCCCCEEEEEe--CCcEEEEECCCC--CEEEEecC----CCcccCEEECCCCCEEEEEEeeCCCC---CceEEEEEEe
Confidence            455  77999995  456999999988  89999986    45677899999999999987654321   3468999999


Q ss_pred             CCCCcccceecccCCC-------cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc
Q 006979          229 NGQNIQEPKVLVSGSD-------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (623)
Q Consensus       229 ~~g~~~~~~~l~~~~~-------~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~  301 (623)
                      .+++   .++|+....       ....+.|||||+.|+|.....+.  .....++.++.+++    ........      
T Consensus        76 ~~g~---~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~------  140 (281)
T d1k32a2          76 ENGE---IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF--SSMTCLYRVENDGI----NFVPLNLG------  140 (281)
T ss_dssp             TTTE---EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSS--TTCCEEEEEEGGGT----EEEECCSC------
T ss_pred             cCCc---eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCC--ccceeeeeecCCCc----eeEEecCC------
Confidence            9998   777765432       23457799999999998754332  12345667776655    22222222      


Q ss_pred             cCcCceeCCCCc-EEEEEeCCCCe--------eeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEE
Q 006979          302 SPTEPKWSSKGE-LFFVTDRKNGF--------WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA  372 (623)
Q Consensus       302 ~~~~~~ws~DG~-l~~~~~~~~g~--------~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~  372 (623)
                       .....|.+||. +++........        ...............++........+.|              .++.++
T Consensus       141 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~  205 (281)
T d1k32a2         141 -PATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVI--------------VGHRIY  205 (281)
T ss_dssp             -SCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEE--------------ETTEEE
T ss_pred             -ccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeee--------------eccccc
Confidence             23567778887 55554431111        1111222223333333332222222222              345788


Q ss_pred             EEEEECCeEEEEEEeCCCCceeecccCCc-ceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcceeee
Q 006979          373 CSYRQNGRSYLGILDDFGHSLSLLDIPFT-DIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       373 ~~~~~~g~~~L~~~d~~~~~~~~lt~~~~-~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                      +..+..+..+||++|+++++.++|+.... .+..+++++++|+|...     .+||++++++++.++|+
T Consensus       206 ~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         206 FITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKG-----GSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             EEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEET-----TEEEEECTTTCCEEECC
T ss_pred             eecccccccceEEEeCCCCceEEeecCCCcccccCcCCCCEEEEEeC-----CEEEEEECCCCCEEEec
Confidence            88888899999999999999999987533 34456999999998653     47999999999976654

>d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: Alpha-amino acid ester hydrolase
species: Xanthomonas citri [TaxId: 346]

Probab=99.71  E-value=9.5e-18  Score=173.19  Aligned_cols=144  Identities=15%  Similarity=0.191  Sum_probs=117.4

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc---------cCcCCHHhHHHHcCceEEEEEC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---------RGILNLSIQYWTSRGWAFVDVN  531 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~---------~~~~~~~~~~~a~~G~~v~~~d  531 (623)
                      -+.+.++.. ||.+|++.+|.|++       .+++|+||+.|+......         ...+....++|+++||+|+.+|
T Consensus        24 ~~~v~i~~r-DG~~L~~~v~~P~~-------~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d   95 (381)
T d1mpxa2          24 KREVMIPMR-DGVKLHTVIVLPKG-------AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD   95 (381)
T ss_dssp             EEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred             EEEEEEECC-CCCEEEEEEEEeCC-------CCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEe
Confidence            367899998 99999999999987       678999999986421111         1123356789999999999999


Q ss_pred             CCCCCCCchhHHHh-----hccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecc
Q 006979          532 YGGSTGYGREFRER-----LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLY  605 (623)
Q Consensus       532 ~rGs~~~g~~~~~~-----~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~  605 (623)
                      +||+++++..+...     .....+..+++|..++++|+.+++.+|.+||+++|+|+||+++++++ ..|+.++|+|+.+
T Consensus        96 ~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~  175 (381)
T d1mpxa2          96 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPES  175 (381)
T ss_dssp             CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred             cCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeec
Confidence            99998887765321     22334567899999999999999888999999999999999998888 7788999999999


Q ss_pred             cCCCHHH
Q 006979          606 GVSIPVI  612 (623)
Q Consensus       606 g~~d~~~  612 (623)
                      |++|+..
T Consensus       176 ~~~d~~~  182 (381)
T d1mpxa2         176 PMIDGWM  182 (381)
T ss_dssp             CCCCTTT
T ss_pred             ccccccc
Confidence            9999643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.5e-14  Score=140.86  Aligned_cols=252  Identities=11%  Similarity=0.065  Sum_probs=176.3

Q ss_pred             CcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCCC--cEEEEeCCCC
Q 006979          100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ--RLYKHSIDSK  175 (623)
Q Consensus       100 ~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~--~l~~~d~~~g  175 (623)
                      .+|.|+..+...++.+.||.++.+ |...+.++.....         ..+-.+++|  .|+|.....+  .+|.++..++
T Consensus         4 ~~iay~~~~~~~~~~~~l~i~d~d-G~~~~~l~~~~~~---------~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~   73 (269)
T d2hqsa1           4 TRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQP---------LMSPAWSPDGSKLAYVTFESGRSALVIQTLANG   73 (269)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSC---------EEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CeEEEEEEeCCCCceEEEEEEcCC-CCCcEEEecCCCc---------eeeeEECCCCCEEEEEEeeccCcceeeeecccC
Confidence            467777777665677789988766 3355666533211         234455655  8999876554  5999998877


Q ss_pred             CCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCC
Q 006979          176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG  255 (623)
Q Consensus       176 ~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG  255 (623)
                        ..++++..    ......+.|||||+++++.......      ..+.........   .............|.|++++
T Consensus        74 --~~~~~~~~----~~~~~~~~~spdg~~i~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  138 (269)
T d2hqsa1          74 --AVRQVASF----PRHNGAPAFSPDGSKLAFALSKTGS------LNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDS  138 (269)
T ss_dssp             --CEEEEECC----SSCEEEEEECTTSSEEEEEECTTSS------CEEEEEETTTCC---EEECCCCSSCEEEEEECTTS
T ss_pred             --ceeEEeee----ecccccceecCCCCeeeEeeecCCc------cceeeccccccc---ceeeeecccccccccccccc
Confidence              67777765    3344567899999999998765433      345555554444   44444454555678899999


Q ss_pred             CEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCC
Q 006979          256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       256 ~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~  334 (623)
                      +.+++.....     ....|++.+++++.    ...+....    .....+.|+|||+ +++.+.. .+...|+.++..+
T Consensus       139 ~~~~~~~~~~-----g~~~i~~~~~~~~~----~~~~~~~~----~~~~~~~~spdg~~~~~~~~~-~~~~~i~~~~~~~  204 (269)
T d2hqsa1         139 QNLAFTSDQA-----GRPQVYKVNINGGA----PQRITWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLAT  204 (269)
T ss_dssp             SEEEEEECTT-----SSCEEEEEETTSSC----CEECCCSS----SEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTT
T ss_pred             ccceeccccc-----CCceEeeeeccccc----ceeeeccc----ccccccccccccceeEEEeec-CCceeeeEeeccc
Confidence            9999887443     24579999988762    23333333    4556889999999 7777777 7888999999887


Q ss_pred             CeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcce
Q 006979          335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI  403 (623)
Q Consensus       335 ~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v  403 (623)
                      +..+.+ ........|.|++            ||+.|+|++.+++..+||+++++++..++|+.....+
T Consensus       205 ~~~~~~-~~~~~~~~p~~SP------------DG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~  260 (269)
T d2hqsa1         205 GGVQVL-SSTFLDETPSLAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV  260 (269)
T ss_dssp             CCEEEC-CCSSSCEEEEECT------------TSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEE
T ss_pred             ccceEe-ecCccccceEECC------------CCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcE
Confidence            765444 3333334566665            9999999999999999999999999999998876544

>d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: Bacterial cocaine esterase N-terminal domain
species: Rhodococcus sp. mb1 [TaxId: 51612]

Probab=99.68  E-value=3.3e-17  Score=167.10  Aligned_cols=135  Identities=18%  Similarity=0.111  Sum_probs=113.6

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCC--CcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT--SEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~--~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      +.|.++.+ ||.+|.+.+|.|+.       +++.|+||+.||...  ......+...+++|+++||+|+.+|+||+++++
T Consensus         6 ~~v~ipmr-DGv~L~~~vy~P~~-------~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~   77 (347)
T d1ju3a2           6 SNVMVPMR-DGVRLAVDLYRPDA-------DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASE   77 (347)
T ss_dssp             EEEEEECT-TSCEEEEEEEEECC-------SSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCC
T ss_pred             eCeEEECC-CCCEEEEEEEEcCC-------CCCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccC
Confidence            56889998 99999999999986       678999999997422  112234455688999999999999999999988


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      ..+.      ....+.+|..++++|+.+++++| .||+++|.|+||+++++++ ..|..++|+|+..+.+|+.
T Consensus        78 G~~~------~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~  143 (347)
T d1ju3a2          78 GEFV------PHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLY  143 (347)
T ss_dssp             SCCC------TTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTC
T ss_pred             Cccc------cccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhh
Confidence            7552      33455689999999999999998 6999999999999999988 6788999999999999863

>d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: Alpha-amino acid ester hydrolase
species: Acetobacter pasteurianus [TaxId: 438]

Probab=99.67  E-value=5.7e-17  Score=167.70  Aligned_cols=145  Identities=19%  Similarity=0.239  Sum_probs=118.7

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCC----cc------cCcCCHHhHHHHcCceEEEE
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS----EA------RGILNLSIQYWTSRGWAFVD  529 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~----~~------~~~~~~~~~~~a~~G~~v~~  529 (623)
                      .-+.|.++.+ ||.+|++.+|.|++       ++++|+||+.|+....    ..      .......+++|+++||+|+.
T Consensus        27 ~~~~v~ipmr-DG~~L~~~v~~P~~-------~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~   98 (385)
T d2b9va2          27 IKREVMVPMR-DGVKLYTVIVIPKN-------ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVF   98 (385)
T ss_dssp             EEEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEE
T ss_pred             eEeEEEEECC-CCCEEEEEEEEcCC-------CCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEE
Confidence            4467899999 99999999999987       6789999997654210    00      11233567899999999999


Q ss_pred             ECCCCCCCCchhHHHh-----hccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEe
Q 006979          530 VNYGGSTGYGREFRER-----LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGAS  603 (623)
Q Consensus       530 ~d~rGs~~~g~~~~~~-----~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~  603 (623)
                      +|+||.++++..|...     ....++..+.+|..++++|+.+++.++.+||+++|+||||++++.++ ..++.++|+|.
T Consensus        99 ~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~  178 (385)
T d2b9va2          99 QDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAP  178 (385)
T ss_dssp             EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEE
T ss_pred             EcCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEE
Confidence            9999999988776432     23456677899999999999999878889999999999999999998 67889999999


Q ss_pred             cccCCCHHH
Q 006979          604 LYGVSIPVI  612 (623)
Q Consensus       604 ~~g~~d~~~  612 (623)
                      ..++.|+..
T Consensus       179 ~~~~~d~~~  187 (385)
T d2b9va2         179 ESPMVDGWM  187 (385)
T ss_dssp             EEECCCTTT
T ss_pred             ecccccccc
Confidence            999988643

>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: 2,6-dihydropseudooxynicotine hydrolase-like
domain: 2,6-dihydropseudooxynicotine hydrolase
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.66  E-value=1.5e-16  Score=162.78  Aligned_cols=135  Identities=16%  Similarity=0.024  Sum_probs=107.6

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      ..+.++++.  +|..|+++++.|++       .++.|+||++||...  ....+...++.|+++||+|+.+|+||.|...
T Consensus       105 ~~e~v~ip~--dg~~l~g~l~~P~~-------~~~~P~Vi~~hG~~~--~~e~~~~~~~~l~~~G~~vl~~D~~G~G~s~  173 (360)
T d2jbwa1         105 PAERHELVV--DGIPMPVYVRIPEG-------PGPHPAVIMLGGLES--TKEESFQMENLVLDRGMATATFDGPGQGEMF  173 (360)
T ss_dssp             CEEEEEEEE--TTEEEEEEEECCSS-------SCCEEEEEEECCSSC--CTTTTHHHHHHHHHTTCEEEEECCTTSGGGT
T ss_pred             CeEEeecCc--CCcccceEEEecCC-------CCCceEEEEeCCCCc--cHHHHHHHHHHHHhcCCEEEEEccccccccC
Confidence            567888886  69999999999987       567899999999743  3344556788999999999999999965432


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHH
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVI  612 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~  612 (623)
                      +.     .. .......++.++++|+..++.+|++||+|+|+|+||++++.++ .+| +++|+|+..|+.|+..
T Consensus       174 ~~-----~~-~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~~~  240 (360)
T d2jbwa1         174 EY-----KR-IAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDLDY  240 (360)
T ss_dssp             TT-----CC-SCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCSTT
T ss_pred             cc-----cc-ccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccHHH
Confidence            21     11 1112235677889999999999999999999999999999998 555 6899999999988743

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.6e-14  Score=149.05  Aligned_cols=311  Identities=14%  Similarity=0.140  Sum_probs=183.8

Q ss_pred             CceEEcC-CCcEEEEeecCCC---CCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcE
Q 006979           92 GGTAVDG-HGRLIWLESRPTE---AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL  167 (623)
Q Consensus        92 ~~~~~~~-~~~~~~l~~~~~e---~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l  167 (623)
                      ....+|| ++.+++......-   .....++.++..++ ..+.+.+..... ..+   .-..|++++..|+|+.  +++|
T Consensus        64 ~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~-~~~~l~~~~~~~-~~l---~~~~wSPDG~~iafv~--~~nl  136 (465)
T d1xfda1          64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG-DPQSLDPPEVSN-AKL---QYAGWGPKGQQLIFIF--ENNI  136 (465)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC-CCEECCCTTCCS-CCC---SBCCBCSSTTCEEEEE--TTEE
T ss_pred             ceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC-ceeeccCccCCc-ccc---ceeeeccCCceEEEEe--cceE
Confidence            4567888 6666554321100   01123444555433 455565433110 000   0123444555899985  5569


Q ss_pred             EEEeCCCCCCCceecCCCCCCCCe---------------eecceeeCCCCCEEEEEEeccCCC-----------------
Q 006979          168 YKHSIDSKDSSPLPITPDYGEPLV---------------SYADGIFDPRFNRYVTVREDRRQD-----------------  215 (623)
Q Consensus       168 ~~~d~~~g~~~~~~Lt~~~~~~~~---------------~~~d~~~sPdG~~l~~v~~~~~~~-----------------  215 (623)
                      |+++..++  ...++|........               ....+.|||||++|+|.+.|...-                 
T Consensus       137 ~~~~~~~~--~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~  214 (465)
T d1xfda1         137 YYCAHVGK--QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK  214 (465)
T ss_dssp             EEESSSSS--CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred             EEEecCCC--ceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceee
Confidence            99999877  66777754211100               012455999999999998654310                 


Q ss_pred             --------CCCceeEEEEEEcCCCCcccceecccC------CCc-ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEe
Q 006979          216 --------ALNSTTEIVAIALNGQNIQEPKVLVSG------SDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI  280 (623)
Q Consensus       216 --------~~~~~~~L~~idl~~g~~~~~~~l~~~------~~~-~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~  280 (623)
                              ...+...|+++|++++.   .+.....      .+. ...+.|+||++ +++...++.+   +...|+++|.
T Consensus       215 ~~~Yp~~G~~np~~~l~v~d~~~~~---~~~~~~~~~~~~~~~~y~~~~~W~~d~~-~~~~~~nR~q---~~~~i~~~d~  287 (465)
T d1xfda1         215 PYHYPKAGSENPSISLHVIGLNGPT---HDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQ---NVSILTLCDA  287 (465)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSSSC---CCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTS---CEEEEEEEET
T ss_pred             eeeccccCCCCCceeEEEEecCCCc---EEEEEeccCcCccccceeeeeEEcCCCe-EEEEEEcccc---ccceEEEEcC
Confidence                    11345689999998875   3222111      122 23467999987 5555545543   5678999998


Q ss_pred             cCCCceeeeEEEcCCCCCccc-cCcCceeCCCCc-EEEEE--eCCCCeeeEEEEec-------CCCeEEEEeeccccccc
Q 006979          281 SENGDVYKRVCVAGFDPTIVE-SPTEPKWSSKGE-LFFVT--DRKNGFWNLHKWIE-------SNNEVLAIYSLDAEFSR  349 (623)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~ws~DG~-l~~~~--~~~~g~~~L~~~d~-------~~~~~~~l~~~~~~~~~  349 (623)
                      .++.   ...+..+..+.|.. ....|.|++||+ ++|+.  .. .|+.++|.+..       .++..++|+.++.++..
T Consensus       288 ~tg~---~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~-~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~  363 (465)
T d1xfda1         288 TTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ-GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK  363 (465)
T ss_dssp             TTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC-SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred             CCCc---EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeee-cccCceEEEEeccccccCCCceeEEeccCCceEEE
Confidence            8773   23333333334543 335789999999 76653  33 56666776543       33445777777666543


Q ss_pred             c-cccccCcceeEEeecCCCCEEEEEEEEC--CeEEEEEEeCCCCce-eecccC---CcceE--eeeecCCEEEEEEecC
Q 006979          350 P-LWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGHSL-SLLDIP---FTDID--NITLGNDCLFVEGASG  420 (623)
Q Consensus       350 ~-~w~~~~~~~~~l~~s~~~~~l~~~~~~~--g~~~L~~~d~~~~~~-~~lt~~---~~~v~--~~~~~~~~~~~~~~s~  420 (623)
                      . .|            +.+++.|||++.+.  +..|||+++++++.. ++|+..   .+.+.  .+++++++++...+++
T Consensus       364 i~~~------------d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~  431 (465)
T d1xfda1         364 ILAY------------DEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP  431 (465)
T ss_dssp             EEEE------------ETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred             EEEE------------cCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecC
Confidence            2 12            23788999998754  578999999987754 445532   12222  3388999999888888


Q ss_pred             CCCCeEEEEEcCCCc
Q 006979          421 VEPSSVAKVTLDDHK  435 (623)
Q Consensus       421 ~~~~~ly~~~l~~~~  435 (623)
                      ..|. +++++..+++
T Consensus       432 ~~P~-~~~~~~~~~~  445 (465)
T d1xfda1         432 GVPM-VTVHNTTDKK  445 (465)
T ss_dssp             SSCC-EEEEETTTCC
T ss_pred             CCCe-EEEEECCCCC
Confidence            7665 6666666555

>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Thioesterases
domain: Myristoyl-ACP-specific thioesterase
species: Vibrio harveyi [TaxId: 669]

Probab=99.60  E-value=2.8e-15  Score=149.43  Aligned_cols=139  Identities=12%  Similarity=0.096  Sum_probs=105.0

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCch-
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR-  540 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~-  540 (623)
                      ..-.++.. ||..|++|.+.|++..     .++.|+||++||..  .....|...+++|+++||.|+.+|+||.+|... 
T Consensus         5 ~~h~~~~~-dg~~l~~w~~~p~~~~-----~~~~~~Vvi~HG~~--~~~~~~~~~a~~L~~~G~~Vi~~D~rGh~G~S~g   76 (302)
T d1thta_           5 IAHVLRVN-NGQELHVWETPPKENV-----PFKNNTILIASGFA--RRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSG   76 (302)
T ss_dssp             EEEEEEET-TTEEEEEEEECCCTTS-----CCCSCEEEEECTTC--GGGGGGHHHHHHHHTTTCCEEEECCCBCC-----
T ss_pred             eeeEEEcC-CCCEEEEEEecCcCCC-----CCCCCEEEEeCCCc--chHHHHHHHHHHHHHCCCEEEEecCCCCCCCCCC
Confidence            34455666 9999999999998732     46679999999973  344567789999999999999999999643222 


Q ss_pred             hHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCHHHhhhh
Q 006979          541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       541 ~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~~~~~~~  616 (623)
                      .+.    ........+|+.++++||.+++   .++|+|+|+||||++++.++.. ..++++|+.+|+.++......
T Consensus        77 ~~~----~~~~~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~-~~v~~li~~~g~~~~~~~~~~  144 (302)
T d1thta_          77 SID----EFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD-LELSFLITAVGVVNLRDTLEK  144 (302)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT-SCCSEEEEESCCSCHHHHHHH
T ss_pred             ccc----CCCHHHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhcc-cccceeEeecccccHHHHHHH
Confidence            111    1111235789999999998874   5799999999999999887743 348899999999999876544

>d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetyl xylan esterase-like
domain: Acetyl xylan esterase TM0077
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=7.8e-16  Score=154.65  Aligned_cols=144  Identities=19%  Similarity=0.131  Sum_probs=110.6

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      +.+.|+|++. ||..|+++++.|++.      .++.|+||++||++...   .+....+.|+++||+|+.+|+||.|.++
T Consensus        54 ~~~~v~~~s~-dG~~l~~~l~~P~~~------~~~~P~Vv~~hG~~~~~---~~~~~~~~~a~~G~~v~~~D~rG~G~s~  123 (322)
T d1vlqa_          54 EAYDVTFSGY-RGQRIKGWLLVPKLE------EEKLPCVVQYIGYNGGR---GFPHDWLFWPSMGYICFVMDTRGQGSGW  123 (322)
T ss_dssp             EEEEEEEECG-GGCEEEEEEEEECCS------CSSEEEEEECCCTTCCC---CCGGGGCHHHHTTCEEEEECCTTCCCSS
T ss_pred             EEEEEEEECC-CCcEEEEEEEeccCC------CCCccEEEEecCCCCCc---CcHHHHHHHHhCCCEEEEeeccccCCCC
Confidence            4578999988 999999999999872      56789999999985433   2334566899999999999999988765


Q ss_pred             hhHHHhh---------------------ccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCce
Q 006979          540 REFRERL---------------------LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTF  598 (623)
Q Consensus       540 ~~~~~~~---------------------~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f  598 (623)
                      .......                     ...+....+.|+.++++++..++.+|++||+++|+|+||++++.++.....|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~~~  203 (322)
T d1vlqa_         124 LKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKA  203 (322)
T ss_dssp             SCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCSSC
T ss_pred             CCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCCCc
Confidence            4321100                     0011123468999999999999999999999999999999999888555578


Q ss_pred             eEEEecccCC-CHHHh
Q 006979          599 KAGASLYGVS-IPVII  613 (623)
Q Consensus       599 ~a~v~~~g~~-d~~~~  613 (623)
                      +++|+.+|.. ++...
T Consensus       204 ~a~v~~~~~~~~~~~~  219 (322)
T d1vlqa_         204 KALLCDVPFLCHFRRA  219 (322)
T ss_dssp             CEEEEESCCSCCHHHH
T ss_pred             cEEEEeCCccccHHHH
Confidence            8888888764 44443

>d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetyl xylan esterase-like
domain: Cephalosporin C deacetylase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.58  E-value=2.7e-15  Score=149.90  Aligned_cols=144  Identities=20%  Similarity=0.139  Sum_probs=110.8

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      +.+.|+|++. ||..|+++++.|++       .++.|+||++||++.  ....+...+..|+++||+|+++|+||.|.+.
T Consensus        55 ~~~~v~~~~~-dg~~i~~~l~~P~~-------~~~~P~vv~~HG~~~--~~~~~~~~~~~la~~Gy~vi~~D~rG~G~s~  124 (318)
T d1l7aa_          55 KVYRLTYKSF-GNARITGWYAVPDK-------EGPHPAIVKYHGYNA--SYDGEIHEMVNWALHGYATFGMLVRGQQRSE  124 (318)
T ss_dssp             EEEEEEEEEG-GGEEEEEEEEEESS-------CSCEEEEEEECCTTC--CSGGGHHHHHHHHHTTCEEEEECCTTTSSSC
T ss_pred             EEEEEEEECC-CCcEEEEEEEecCC-------CCCceEEEEecCCCC--CccchHHHHHHHHHCCCEEEEEeeCCCCCCC
Confidence            5678999988 99999999999987       677899999999843  3345667788999999999999999988765


Q ss_pred             hhHHHhhccCC--------------ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEec
Q 006979          540 REFRERLLGRW--------------GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASL  604 (623)
Q Consensus       540 ~~~~~~~~~~~--------------g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~  604 (623)
                      ..+.......+              ....+.|...+++++..++.+|+++|+++|+|+||.+++..+ ..++ ++++++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~-~~~~~~~  203 (318)
T d1l7aa_         125 DTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVAD  203 (318)
T ss_dssp             CCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEE
T ss_pred             CCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcc-cceEEEe
Confidence            54322111111              112367899999999999999999999999999999999988 5555 5555555


Q ss_pred             cc-CCCHHHhh
Q 006979          605 YG-VSIPVIIS  614 (623)
Q Consensus       605 ~g-~~d~~~~~  614 (623)
                      +| ..++....
T Consensus       204 ~~~~~~~~~~~  214 (318)
T d1l7aa_         204 YPYLSNFERAI  214 (318)
T ss_dssp             SCCSCCHHHHH
T ss_pred             ccccccHHHHh
Confidence            55 55665543

>d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Prolyl oligopeptidase, C-terminal domain
domain: Prolyl oligopeptidase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.55  E-value=2.2e-14  Score=140.41  Aligned_cols=151  Identities=19%  Similarity=0.242  Sum_probs=127.8

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH-HhHHHHcCceEEEEECCCCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVNYGGSTGY  538 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~-~~~~~a~~G~~v~~~d~rGs~~~  538 (623)
                      ++++|+|++. ||.+|+++++.|++  +++  ++++|+||++||||+......+.. ....++.+|++++..++++...+
T Consensus         6 ~~e~v~~~s~-DG~~i~~~l~~P~~--~~~--~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T d1qfma2           6 QTVQIFYPSK-DGTKIPMFIVHKKG--IKL--DGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEY   80 (280)
T ss_dssp             EEEEEEEECT-TSCEEEEEEEEETT--CCC--SSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTT
T ss_pred             EEEEEEEECC-CCCEEEEEEEEcCC--CCC--CCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeecccccccccc
Confidence            4688999998 99999999999998  443  789999999999998877776654 45556678888889999988888


Q ss_pred             chhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhhh
Q 006979          539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIISE  615 (623)
Q Consensus       539 g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~~  615 (623)
                      +..........++....++...++.+...+...+..+++++|+|.||+++..++ ..+++++|++...++.|+.....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (280)
T d1qfma2          81 GETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHK  158 (280)
T ss_dssp             HHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGG
T ss_pred             chhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhcc
Confidence            887777666667777788888888888888888899999999999999999888 78999999999999998866543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.50  E-value=1.5e-13  Score=134.17  Aligned_cols=210  Identities=10%  Similarity=0.048  Sum_probs=126.9

Q ss_pred             eeeCCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979          196 GIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (623)
Q Consensus       196 ~~~sPd--G~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~  273 (623)
                      +.+|||  |++|+|+.+          .+||++|+++++   .++|+.+......|+|||||++|||+.+....  ....
T Consensus         4 ~~~sPdi~G~~v~f~~~----------~dl~~~d~~~g~---~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~--~~~~   68 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVCC----------DDLWEHDLKSGS---TRKIVSNLGVINNARFFPDGRKIAIRVMRGSS--LNTA   68 (281)
T ss_dssp             CCEEEEEETTEEEEEET----------TEEEEEETTTCC---EEEEECSSSEEEEEEECTTSSEEEEEEEESTT--CCEE
T ss_pred             cccCCCCCCCEEEEEeC----------CcEEEEECCCCC---EEEEecCCCcccCEEECCCCCEEEEEEeeCCC--CCce
Confidence            457899  999999876          469999999998   88999888778889999999999999865432  1246


Q ss_pred             EEEEEEecCCCceeeeEEEcCCCC---CccccCcCceeCCCCc-EEEEEeCC--CCeeeEEEEecCCCeEEEEeeccccc
Q 006979          274 ELWVGYISENGDVYKRVCVAGFDP---TIVESPTEPKWSSKGE-LFFVTDRK--NGFWNLHKWIESNNEVLAIYSLDAEF  347 (623)
Q Consensus       274 ~L~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ws~DG~-l~~~~~~~--~g~~~L~~~d~~~~~~~~l~~~~~~~  347 (623)
                      +||++++.++    ..+.++....   ........+.|+|||+ ++|.....  .....++.++.+++..+......   
T Consensus        69 ~i~~~~~~~g----~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  141 (281)
T d1k32a2          69 DLYFYNGENG----EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP---  141 (281)
T ss_dssp             EEEEEETTTT----EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS---
T ss_pred             EEEEEEecCC----ceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCc---
Confidence            7999999877    2233322210   0113445778999999 66655431  12345667777777655443221   


Q ss_pred             ccccccccCcceeEEeecCCCCEEEEEEEEC---------CeEEEEEEeCCCCceeecccCCcceEeeeecCCEEEEEEe
Q 006979          348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQN---------GRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGA  418 (623)
Q Consensus       348 ~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~---------g~~~L~~~d~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~  418 (623)
                      ....|..            +++.+++.....         +...........+....++............++.+++.. 
T Consensus       142 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  208 (281)
T d1k32a2         142 ATHILFA------------DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFIT-  208 (281)
T ss_dssp             CSEEEEE------------TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEE-
T ss_pred             cceeeec------------CCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceec-
Confidence            1112221            444444433211         111111222223334443333222222233455555554 


Q ss_pred             cCCCCCeEEEEEcCCCcceeee
Q 006979          419 SGVEPSSVAKVTLDDHKLKAVD  440 (623)
Q Consensus       419 s~~~~~~ly~~~l~~~~~~~lt  440 (623)
                      ......+||++++++++.++||
T Consensus       209 ~~~~~~~l~~~d~~g~~~~~lt  230 (281)
T d1k32a2         209 DIDGFGQIYSTDLDGKDLRKHT  230 (281)
T ss_dssp             CTTSSCEEEEEETTSCSCEECC
T ss_pred             ccccccceEEEeCCCCceEEee
Confidence            4455678999999999887765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.49  E-value=2.9e-12  Score=135.25  Aligned_cols=311  Identities=8%  Similarity=-0.002  Sum_probs=182.8

Q ss_pred             CCccCceEEcC-CCcEEEEeecCC---CCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEe
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSN  161 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~---e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~  161 (623)
                      ...+..+.||| ++.|.+......   -.....+|.++..++ +...+...+-.         .....+++|  .++|+.
T Consensus        61 ~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~-~~~~l~~~~~~---------~~~~~~SPDG~~ia~~~  130 (470)
T d2bgra1          61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-QLITEERIPNN---------TQWVTWSPVGHKLAYVW  130 (470)
T ss_dssp             SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECCSSCCCTT---------EEEEEECSSTTCEEEEE
T ss_pred             cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC-cccccccCCcc---------ccccccccCcceeeEee
Confidence            34567889999 888877642110   012234555665533 33334332211         223344554  788874


Q ss_pred             CCCCcEEEEeCCCCCCCceecCCCCCCC---------------CeeecceeeCCCCCEEEEEEeccCCC-----------
Q 006979          162 YKDQRLYKHSIDSKDSSPLPITPDYGEP---------------LVSYADGIFDPRFNRYVTVREDRRQD-----------  215 (623)
Q Consensus       162 ~~~~~l~~~d~~~g~~~~~~Lt~~~~~~---------------~~~~~d~~~sPdG~~l~~v~~~~~~~-----------  215 (623)
                        ++.||++++.++  ...+++......               ......+.|||||++|++.+.+....           
T Consensus       131 --~~~l~~~~~~~g--~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~  206 (470)
T d2bgra1         131 --NNDIYVKIEPNL--PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE  206 (470)
T ss_dssp             --TTEEEEESSTTS--CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST
T ss_pred             --cccceEEECCCC--ceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccC
Confidence              456999999887  666666541110               01123466999999999987653310           


Q ss_pred             ----------------CCCceeEEEEEEcCCCCcccceeccc------------CCCcccceeeCCCCCEEEEEEecCCC
Q 006979          216 ----------------ALNSTTEIVAIALNGQNIQEPKVLVS------------GSDFYAFPRMDPRGERMAWIEWHHPN  267 (623)
Q Consensus       216 ----------------~~~~~~~L~~idl~~g~~~~~~~l~~------------~~~~~~~p~wSPDG~~la~~~~~~~~  267 (623)
                                      ...+...++++++.++..   ..+..            +......+.|+++++.+++.. ++.+
T Consensus       207 ~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~r~~  282 (470)
T d2bgra1         207 SLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS---VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWL-RRIQ  282 (470)
T ss_dssp             TCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCS---SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEE-ESST
T ss_pred             CCCCCeeeeeccccccccCCcceEEEEECCCcce---eeeccccccCCccccCCCCceEEEEEEcCCCceeEEEe-eccC
Confidence                            012345688888877652   11111            112234578999997554443 3322


Q ss_pred             CCCCceEEEEEEecCCCceeeeEE-----EcCCCCCccc--cCcCceeCCCCc--EEEEEeCCCCeeeEEEEecCCCeEE
Q 006979          268 MPWDKAELWVGYISENGDVYKRVC-----VAGFDPTIVE--SPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       268 ~p~~~~~L~v~d~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~ws~DG~--l~~~~~~~~g~~~L~~~d~~~~~~~  338 (623)
                         +...+.+++++.... ....+     .......|..  ....+.|++++.  +++.+.. .|+.+||+++.+++..+
T Consensus       283 ---~~~~~~~~~~d~~tg-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~-dg~~~ly~~~~~g~~~~  357 (470)
T d2bgra1         283 ---NYSVMDICDYDESSG-RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE-EGYRHICYFQIDKKDCT  357 (470)
T ss_dssp             ---TEEEEEEEEEETTTT-EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT-TSCEEEEEEETTCSCCE
T ss_pred             ---CceEEEEEEecCCCC-cEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEecc-CcCceeEEEeccCCcee
Confidence               233444555443311 11111     1111112222  235678888876  4566666 88999999999999899


Q ss_pred             EEeecccccccccccccCcceeEEeecCCCCEEEEEEEEC----CeEEEEEEeCCCC-ceeecccC----CcceEee--e
Q 006979          339 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN----GRSYLGILDDFGH-SLSLLDIP----FTDIDNI--T  407 (623)
Q Consensus       339 ~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~----g~~~L~~~d~~~~-~~~~lt~~----~~~v~~~--~  407 (623)
                      .++.++.++... +.        .    +++.+||++...    +..|||+++++++ +.++|+..    ...+..+  +
T Consensus       358 ~lt~g~~~v~~~-~~--------~----d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fS  424 (470)
T d2bgra1         358 FITKGTWEVIGI-EA--------L----TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFS  424 (470)
T ss_dssp             ESCCSSSCEEEE-EE--------E----CSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEEC
T ss_pred             eeccCCeeEEEE-EE--------E----CCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEEC
Confidence            998776655432 11        1    778898887643    4669999999874 56677642    2224333  8


Q ss_pred             ecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          408 LGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       408 ~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      +++++++...+++..|. +.+++..+++
T Consensus       425 pdgky~~~~~s~~~~P~-~~l~~~~~g~  451 (470)
T d2bgra1         425 KEAKYYQLRCSGPGLPL-YTLHSSVNDK  451 (470)
T ss_dssp             TTSSEEEEEECSBSSCE-EEEEETTTTE
T ss_pred             CCCCEEEEEecCCCCCe-EEEEECCCCC
Confidence            99999999998888876 4556666665

>d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Uncharacterized protein TM1040 2492
species: Silicibacter sp. tm1040 [TaxId: 292414]

Probab=99.48  E-value=1.5e-13  Score=133.23  Aligned_cols=115  Identities=17%  Similarity=0.095  Sum_probs=91.6

Q ss_pred             EEEcCCCCCCCCCCCCCCCEEEEecCCCCCc-ccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHH
Q 006979          478 YYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN  556 (623)
Q Consensus       478 ~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~-~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~  556 (623)
                      -+|.|++        ++.|+||++|||++.. ....+...++.|+++||+|+.+|||.+++...           ...++
T Consensus        53 Diy~P~~--------~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~~~-----------p~~~~  113 (261)
T d2pbla1          53 DLFLPEG--------TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRI-----------SEITQ  113 (261)
T ss_dssp             EEECCSS--------SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSCH-----------HHHHH
T ss_pred             EEeccCC--------CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeecccccccccccC-----------chhHH
Confidence            4677864        4679999999998643 33456678999999999999999998654321           23479


Q ss_pred             HHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcC-------CCceeEEEecccCCCHHHhh
Q 006979          557 DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-------RDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       557 D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~-------~~~f~a~v~~~g~~d~~~~~  614 (623)
                      |+.++++|+.++.   ++||+|+|+|+||+++++++..       ...+++++.++|+.|+..+.
T Consensus       114 d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (261)
T d2pbla1         114 QISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLL  175 (261)
T ss_dssp             HHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGG
T ss_pred             HHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhh
Confidence            9999999999874   5899999999999999888732       24689999999999987653

>d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Lipase
domain: Lipase
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=99.47  E-value=5.1e-14  Score=136.86  Aligned_cols=117  Identities=20%  Similarity=0.203  Sum_probs=92.8

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccch
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD  554 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~  554 (623)
                      ..+.+|.|++..     ++++|+||++||+.  .....+..+++.|+++||+|+.+|++|......            ..
T Consensus        37 ~~~~ly~P~~~~-----~g~~P~Vv~~HG~~--g~~~~~~~~a~~lA~~Gy~V~~~d~~~~~~~~~------------~~   97 (260)
T d1jfra_          37 GGGTIYYPTSTA-----DGTFGAVVISPGFT--AYQSSIAWLGPRLASQGFVVFTIDTNTTLDQPD------------SR   97 (260)
T ss_dssp             CCEEEEEESCCT-----TCCEEEEEEECCTT--CCGGGTTTHHHHHHTTTCEEEEECCSSTTCCHH------------HH
T ss_pred             cCEEEEEcCCCC-----CCCccEEEEECCCC--CCHHHHHHHHHHHHhCCCEEEEEeeCCCcCCch------------hh
Confidence            346778887621     56789999999984  344467778999999999999999998654322            12


Q ss_pred             HHHHHHHHHHHHhC----CCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCH
Q 006979          555 VNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       555 ~~D~~~~~~~l~~~----~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~  610 (623)
                      ..|+.++++++.+.    +.+|++||+++|+|+||.+++.++....+++|+|+++|....
T Consensus        98 ~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~~~~A~v~~~~~~~~  157 (260)
T d1jfra_          98 GRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTSLKAAIPLTGWNTD  157 (260)
T ss_dssp             HHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTTCSEEEEESCCCSC
T ss_pred             HHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhccchhheeeeccccc
Confidence            57888899998874    669999999999999999999999555578999999887543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.47  E-value=6.3e-13  Score=131.54  Aligned_cols=251  Identities=12%  Similarity=0.128  Sum_probs=154.9

Q ss_pred             cCCHHHHhccCCcc-CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcc-cCCCCCccceeeeecCCceEEEeC
Q 006979           78 PLTADVVSGASKRL-GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSD-ITPKEYAVRTTAQEYGGGAFRIFG  154 (623)
Q Consensus        78 ~~t~~~~~~~~~~~-~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~-l~p~~~~~r~~~~~~g~~~~~~s~  154 (623)
                      |++.+.+.+..+.| +++.|++ ++.|||+++...     .|++++..++ +.+. .+|..           .+++++.+
T Consensus         6 ~~~~~~~~~~~~~LgEgp~wd~~~~~l~wvDi~~~-----~I~r~d~~~g-~~~~~~~~~~-----------~~~i~~~~   68 (295)
T d2ghsa1           6 PFAGRVLDETPMLLGEGPTFDPASGTAWWFNILER-----ELHELHLASG-RKTVHALPFM-----------GSALAKIS   68 (295)
T ss_dssp             CCCCEEEECSCCSBEEEEEEETTTTEEEEEEGGGT-----EEEEEETTTT-EEEEEECSSC-----------EEEEEEEE
T ss_pred             ceeEEEEcCCCCeeeeCCeEECCCCEEEEEECCCC-----EEEEEECCCC-eEEEEECCCC-----------cEEEEEec
Confidence            45777777778888 7888898 999999997743     3888887743 2221 22322           34455544


Q ss_pred             C-EEEEEeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979          155 D-TVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (623)
Q Consensus       155 d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~  232 (623)
                      + .+++.. . ..|+++|++++  ..+.+... .+.+..+.+|..++|+|+.++..+.....   .....+|+++  .++
T Consensus        69 dg~l~va~-~-~gl~~~d~~tg--~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~---~~~g~l~~~~--~g~  139 (295)
T d2ghsa1          69 DSKQLIAS-D-DGLFLRDTATG--VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAE---TGAGSIYHVA--KGK  139 (295)
T ss_dssp             TTEEEEEE-T-TEEEEEETTTC--CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCC---TTCEEEEEEE--TTE
T ss_pred             CCCEEEEE-e-CccEEeecccc--eeeEEeeeecCCCcccceeeEECCCCCEEEEecccccc---ccceeEeeec--CCc
Confidence            4 666653 3 35999999987  66666543 23446789999999999876655543221   1236677765  455


Q ss_pred             cccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc--eeeeEEEcCCCCCccccCcCceeCC
Q 006979          233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD--VYKRVCVAGFDPTIVESPTEPKWSS  310 (623)
Q Consensus       233 ~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ws~  310 (623)
                         ++.+..+....+.+.||||+++|+|....       ...||+++++....  ...+..+.... .....+.......
T Consensus       140 ---~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~-------~~~I~~~~~d~~~~~~~~~~~~~~~~~-~~~g~pdG~~vD~  208 (295)
T d2ghsa1         140 ---VTKLFADISIPNSICFSPDGTTGYFVDTK-------VNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDA  208 (295)
T ss_dssp             ---EEEEEEEESSEEEEEECTTSCEEEEEETT-------TCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECT
T ss_pred             ---EEEEeeccCCcceeeecCCCceEEEeecc-------cceeeEeeecccccccccceEEEeccC-cccccccceEEcC
Confidence               56666555566788999999999888633       44699999875422  11222222111 0014456677888


Q ss_pred             CCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC
Q 006979          311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG  379 (623)
Q Consensus       311 DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g  379 (623)
                      +|.| |++..  +...|.++|+++...+.+.-.....+..         .|-  -++.+.||+++.+.+
T Consensus       209 ~Gnl-Wva~~--~~g~V~~~dp~G~~~~~i~lP~~~~T~~---------~FG--G~d~~~LyvTta~~~  263 (295)
T d2ghsa1         209 EGHI-WNARW--GEGAVDRYDTDGNHIARYEVPGKQTTCP---------AFI--GPDASRLLVTSAREH  263 (295)
T ss_dssp             TSCE-EEEEE--TTTEEEEECTTCCEEEEEECSCSBEEEE---------EEE--STTSCEEEEEEBCTT
T ss_pred             CCCE-Eeeee--CCCceEEecCCCcEeeEecCCCCceEEE---------EEe--CCCCCEEEEEECCcC
Confidence            8854 45554  2347999999776666654211111111         111  016678999876544

>d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Mycobacterial antigens
domain: Antigen 85a
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=1.4e-13  Score=135.90  Aligned_cols=142  Identities=13%  Similarity=0.116  Sum_probs=104.0

Q ss_pred             cEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC---HHhHHHHcCceEEEEECCCCCCC
Q 006979          461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGSTG  537 (623)
Q Consensus       461 ~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~---~~~~~~a~~G~~v~~~d~rGs~~  537 (623)
                      .+.++++++..|.++...++.|         ++++|+|+++||++.......+.   ...+.+.++|++|+.+++.+.+.
T Consensus         9 v~~~~~~s~~~~r~~~~~v~~p---------~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   79 (288)
T d1sfra_           9 VEYLQVPSPSMGRDIKVQFQSG---------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSF   79 (288)
T ss_dssp             CEEEEEEETTTTEEEEEEEECC---------STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCT
T ss_pred             EEEEEEECCCCCcEEEEEEeCC---------CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCC
Confidence            4667787765688899878766         45789999999975443322222   24677888999999999987665


Q ss_pred             CchhHHHhhccCC--c-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          538 YGREFRERLLGRW--G-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       538 ~g~~~~~~~~~~~--g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      ++..+........  + ..+..-+.+.+.+|.++..+|++|++|+|+|+||++++.++ ++|++|+++++++|..|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~  157 (288)
T d1sfra_          80 YSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPS  157 (288)
T ss_dssp             TCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTT
T ss_pred             CccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCccccc
Confidence            5443322111111  1 11222355778899888889999999999999999999998 9999999999999998754

>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.44  E-value=4e-13  Score=139.11  Aligned_cols=94  Identities=17%  Similarity=0.095  Sum_probs=80.3

Q ss_pred             HHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC---------------CCCCCCceEEE
Q 006979          515 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---------------GKADEKRLCIT  579 (623)
Q Consensus       515 ~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~---------------~~~d~~rv~i~  579 (623)
                      ...++|+++||+|+.+|.||+++++..+.     .++..+.+|..++|+||.++               ++.| .|||++
T Consensus       127 ~~~~~~~~~GYavv~~D~RG~g~S~G~~~-----~~~~~e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~Wsn-GkVGm~  200 (405)
T d1lnsa3         127 SLNDYFLTRGFASIYVAGVGTRSSDGFQT-----SGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWAN-GKVAMT  200 (405)
T ss_dssp             HHHHHHHTTTCEEEEECCTTSTTSCSCCC-----TTSHHHHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEE-EEEEEE
T ss_pred             cchHHHHhCCCEEEEECCCCCCCCCCccc-----cCChhhhhhHHHHHHHHHhcccccccccccccccccccC-CeeEEE
Confidence            56789999999999999999999887653     35567889999999999764               4443 599999


Q ss_pred             EcChHHHHHHHHh-cCCCceeEEEecccCCCHHHhh
Q 006979          580 GGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPVIIS  614 (623)
Q Consensus       580 G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~~~~  614 (623)
                      |.||||++.++++ ..|..++|+|+..|++|+.+..
T Consensus       201 G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~  236 (405)
T d1lnsa3         201 GKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYY  236 (405)
T ss_dssp             EETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHH
T ss_pred             ecCHHHHHHHHHHhcCCccceEEEecCccccHHHHh
Confidence            9999999999998 7788999999999999987653

>d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Atu1826-like
domain: XC6422 protein
species: Xanthomonas campestris [TaxId: 339]

Probab=99.42  E-value=5.8e-13  Score=124.79  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=99.1

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCc--ccC-cCCHHhHHHHcCceEEEEECCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE--ARG-ILNLSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~--~~~-~~~~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      +.+.+.++.+ +| ++.+.+..|....     ..+.+++|++|+.|...  ... .+...++.|+++||.|+.+||||.|
T Consensus         7 ~~~~l~i~gp-~G-~l~~~~~~p~~~~-----~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G   79 (218)
T d2fuka1           7 ESAALTLDGP-VG-PLDVAVDLPEPDV-----AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVG   79 (218)
T ss_dssp             SCEEEEEEET-TE-EEEEEEECCCTTS-----CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTST
T ss_pred             CceEEEEeCC-Cc-cEEEEEEcCCCCC-----CCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCc
Confidence            4467888887 66 6999999886521     34567778888654321  111 2345788899999999999999987


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCCCHH
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~d~~  611 (623)
                      .+...+      .......+|+.++++|+.++.  +.++|+++|+||||.+++.++... ..++.|+.+|..+..
T Consensus        80 ~S~g~~------~~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~-~~~~lil~ap~~~~~  145 (218)
T d2fuka1          80 TSAGSF------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL-EPQVLISIAPPAGRW  145 (218)
T ss_dssp             TCCSCC------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH-CCSEEEEESCCBTTB
T ss_pred             cCCCcc------CcCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc-ccceEEEeCCcccch
Confidence            755432      123456899999999999874  457999999999999999888432 246788888876543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.41  E-value=4e-12  Score=127.81  Aligned_cols=182  Identities=8%  Similarity=-0.025  Sum_probs=130.0

Q ss_pred             eEEE-eCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 006979          149 AFRI-FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA  227 (623)
Q Consensus       149 ~~~~-s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~id  227 (623)
                      .|.+ +++.+++..  .++||++|+.++  ..++++.     ..+...++|||||++|+++..+..       ..|+++|
T Consensus         9 ~fSP~dG~~~a~~~--~g~v~v~d~~~~--~~~~~~~-----~~~v~~~~~spDg~~l~~~~~~~g-------~~v~v~d   72 (360)
T d1k32a3           9 DFSPLDGDLIAFVS--RGQAFIQDVSGT--YVLKVPE-----PLRIRYVRRGGDTKVAFIHGTREG-------DFLGIYD   72 (360)
T ss_dssp             EEEECGGGCEEEEE--TTEEEEECTTSS--BEEECSC-----CSCEEEEEECSSSEEEEEEEETTE-------EEEEEEE
T ss_pred             cccCCCCCEEEEEE--CCeEEEEECCCC--cEEEccC-----CCCEEEEEECCCCCEEEEEEcCCC-------CEEEEEE
Confidence            4666 344677764  467999999877  6777765     356778999999999998876532       4689999


Q ss_pred             cCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979          228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (623)
Q Consensus       228 l~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
                      +++++   ++++..........+|||||++|++...+        ..+++++++++.   ....+....    .....+.
T Consensus        73 ~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~  134 (360)
T d1k32a3          73 YRTGK---AEKFEENLGNVFAMGVDRNGKFAVVANDR--------FEIMTVDLETGK---PTVIERSRE----AMITDFT  134 (360)
T ss_dssp             TTTCC---EEECCCCCCSEEEEEECTTSSEEEEEETT--------SEEEEEETTTCC---EEEEEECSS----SCCCCEE
T ss_pred             CCCCc---EEEeeCCCceEEeeeecccccccceeccc--------cccccccccccc---eeeeeeccc----ccccchh
Confidence            99988   77777766666778999999999988633        348888887763   334444433    4567899


Q ss_pred             eCCCCc-EEEEEeCC------CCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEE
Q 006979          308 WSSKGE-LFFVTDRK------NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR  376 (623)
Q Consensus       308 ws~DG~-l~~~~~~~------~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~  376 (623)
                      |+|||+ |++.....      .....++.+|..+++...++..........|++            +++.|++.+.
T Consensus       135 ~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~sp------------dg~~l~~~s~  198 (360)
T d1k32a3         135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA------------DSKNLYYLSY  198 (360)
T ss_dssp             ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECT------------TSCEEEEEES
T ss_pred             hccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccC------------CCCEEEEEeC
Confidence            999999 66655431      223567788988888777765544444444544            7777777654

>d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Carboxylesterase
species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]

Probab=99.41  E-value=1.7e-13  Score=139.66  Aligned_cols=137  Identities=15%  Similarity=0.094  Sum_probs=104.4

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC---cCCHHhHHHHcCceEEEEECCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~---~~~~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      ..+...+++. +|..|.+++|.|++.      .++.|+||++|||.+.....   .+...++.++++||+|+.+|||.+.
T Consensus        78 ~~~~~~i~~~-dg~~i~~~iy~P~~~------~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~  150 (358)
T d1jkma_          78 ETSTETILGV-DGNEITLHVFRPAGV------EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAW  150 (358)
T ss_dssp             EEEEEEEECT-TSCEEEEEEEEETTC------CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSE
T ss_pred             cEEEEEEeCC-CCCEEEEEEEecCCC------CCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeecccc
Confidence            4566778887 999999999999873      46789999999996543322   2345788899999999999999864


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhCC-CCCCCceEEEEcChHHHHHHHHh-c-----CCCceeEEEecccCCC
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRLCITGGSAGGYTTLAAL-A-----FRDTFKAGASLYGVSI  609 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~-~~d~~rv~i~G~S~GG~~~~~~~-~-----~~~~f~a~v~~~g~~d  609 (623)
                      +...       +......++|+.++++|+.++. .+|++||+|+|.|+||++++.++ .     ....+.+.+..+|+.+
T Consensus       151 ~~~p-------e~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~  223 (358)
T d1jkma_         151 TAEG-------HHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYIS  223 (358)
T ss_dssp             ETTE-------ECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCC
T ss_pred             cccc-------cCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceec
Confidence            3211       1112345899999999998863 36889999999999999998765 2     1346788888888765


Q ss_pred             H
Q 006979          610 P  610 (623)
Q Consensus       610 ~  610 (623)
                      .
T Consensus       224 ~  224 (358)
T d1jkma_         224 G  224 (358)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Dienelactone hydrolase
domain: Dienelactone hydrolase
species: Pseudomonas sp., B13 [TaxId: 306]

Probab=99.39  E-value=1.9e-13  Score=130.54  Aligned_cols=133  Identities=17%  Similarity=0.150  Sum_probs=97.5

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~  541 (623)
                      |.|+|++. ||..+++++..|++        +++|+||++|++.+  ........++.|+++||.|+++|+++.++.+..
T Consensus         4 e~v~~~~~-dg~~~~a~~~~P~~--------~~~P~vl~~h~~~G--~~~~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~   72 (233)
T d1dina_           4 EGISIQSY-DGHTFGALVGSPAK--------APAPVIVIAQEIFG--VNAFMRETVSWLVDQGYAAVCPDLYARQAPGTA   72 (233)
T ss_dssp             TTCCEECT-TSCEECEEEECCSS--------SSEEEEEEECCTTB--SCHHHHHHHHHHHHTTCEEEEECGGGGTSTTCB
T ss_pred             eEEEEEcC-CCCEEEEEEECCCC--------CCceEEEEeCCCCC--CCHHHHHHHHHHHhcCCcceeeeeccCCCcCcc
Confidence            45678887 99999999999964        57899999997743  222344568899999999999998765554321


Q ss_pred             -----HH--H----hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccC
Q 006979          542 -----FR--E----RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGV  607 (623)
Q Consensus       542 -----~~--~----~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~  607 (623)
                           +.  .    .....-......|+.++++++.+++. +.+||+++|+|+||.+++.++.++. +.++++.+|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~~~-~~~~~~~~~~  147 (233)
T d1dina_          73 LDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAKGY-VDRAVGYYGV  147 (233)
T ss_dssp             CCTTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHHTC-SSEEEEESCS
T ss_pred             cChHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccccc-cceecccccc
Confidence                 11  1    01111122346899999999998875 5689999999999999999886554 5666777764

>d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Feruloyl esterase domain of the cellulosomal xylanase y
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.38  E-value=1.5e-13  Score=134.29  Aligned_cols=146  Identities=15%  Similarity=0.068  Sum_probs=100.1

Q ss_pred             CCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-CC----HHhHH----HHcCceEEEE
Q 006979          459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LN----LSIQY----WTSRGWAFVD  529 (623)
Q Consensus       459 ~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-~~----~~~~~----~a~~G~~v~~  529 (623)
                      .+.+.++++.. +| +..+++|.|++  |++  ++++|+|+++||++....... ..    .....    .....+.|+.
T Consensus        25 g~v~~~~~~~~-~~-~r~~~vylP~~--y~~--~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   98 (273)
T d1wb4a1          25 GRIVKETYTGI-NG-TKSLNVYLPYG--YDP--NKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVT   98 (273)
T ss_dssp             CEEEEEEEEET-TE-EEEEEEEECTT--CCT--TSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEE
T ss_pred             CeEEEEEEecC-CC-eEEEEEEeCCC--CCC--CCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeec
Confidence            46778888886 55 56889999998  665  788999999999964433211 11    11111    1234799999


Q ss_pred             ECCCCCCCCchhHHHhhccCCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          530 VNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       530 ~d~rGs~~~g~~~~~~~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +++++..+.+..+.......... .+..+....++.+..+..+|++|++|+|+|+||++++.++ ++|++|+++++.+|.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~  178 (273)
T d1wb4a1          99 PTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGD  178 (273)
T ss_dssp             CCSCSTTCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCC
T ss_pred             cccCCCCCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcc
Confidence            99998877777655433322211 1112222223333334457999999999999999999998 899999999999997


Q ss_pred             CCH
Q 006979          608 SIP  610 (623)
Q Consensus       608 ~d~  610 (623)
                      .+.
T Consensus       179 ~~~  181 (273)
T d1wb4a1         179 YWY  181 (273)
T ss_dssp             CCB
T ss_pred             ccc
Confidence            654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.34  E-value=2.3e-11  Score=122.06  Aligned_cols=179  Identities=9%  Similarity=-0.055  Sum_probs=126.1

Q ss_pred             eeeCC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceE
Q 006979          196 GIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE  274 (623)
Q Consensus       196 ~~~sP-dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~  274 (623)
                      ..||| ||++++++..          .+||++|+.++.   ++++..+. .+..++|||||++|++...+.      ...
T Consensus         8 ~~fSP~dG~~~a~~~~----------g~v~v~d~~~~~---~~~~~~~~-~v~~~~~spDg~~l~~~~~~~------g~~   67 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSR----------GQAFIQDVSGTY---VLKVPEPL-RIRYVRRGGDTKVAFIHGTRE------GDF   67 (360)
T ss_dssp             EEEEECGGGCEEEEET----------TEEEEECTTSSB---EEECSCCS-CEEEEEECSSSEEEEEEEETT------EEE
T ss_pred             ccccCCCCCEEEEEEC----------CeEEEEECCCCc---EEEccCCC-CEEEEEECCCCCEEEEEEcCC------CCE
Confidence            45899 9999999754          579999999987   67775443 456789999999999987543      445


Q ss_pred             EEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEee-cccccccccc
Q 006979          275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLW  352 (623)
Q Consensus       275 L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~-~~~~~~~~~w  352 (623)
                      |+++|++++    ..+.+....    ..+....|+|||+ +++....    ..++.++.++++...+.. ....+....|
T Consensus        68 v~v~d~~~~----~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (360)
T d1k32a3          68 LGIYDYRTG----KAEKFEENL----GNVFAMGVDRNGKFAVVANDR----FEIMTVDLETGKPTVIERSREAMITDFTI  135 (360)
T ss_dssp             EEEEETTTC----CEEECCCCC----CSEEEEEECTTSSEEEEEETT----SEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred             EEEEECCCC----cEEEeeCCC----ceEEeeeecccccccceeccc----cccccccccccceeeeeecccccccchhh
Confidence            899998876    333444444    4567889999999 5544433    356777888887665553 3333444455


Q ss_pred             cccCcceeEEeecCCCCEEEEEEEEC-------CeEEEEEEeCCCCceeecccCCcceEee--eecCCEEEEEEe
Q 006979          353 VFGINSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGA  418 (623)
Q Consensus       353 ~~~~~~~~~l~~s~~~~~l~~~~~~~-------g~~~L~~~d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~  418 (623)
                      ++            +++.|++.....       ....++++|..+++...++........+  +++++.+++...
T Consensus       136 sp------------dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~  198 (360)
T d1k32a3         136 SD------------NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY  198 (360)
T ss_dssp             CT------------TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             cc------------ceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeC
Confidence            44            888888876543       3567888999998888887665544333  788888877654

>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Carboxylesterase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.31  E-value=3.4e-12  Score=127.24  Aligned_cols=132  Identities=20%  Similarity=0.185  Sum_probs=99.0

Q ss_pred             CCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHHH-cCceEEEEECCCCC
Q 006979          458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWT-SRGWAFVDVNYGGS  535 (623)
Q Consensus       458 ~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a-~~G~~v~~~d~rGs  535 (623)
                      ....+.+.++.. +| .+...+|.|+.         +.|+||++|||.+..... .+....+.++ +.||+|+.+|||.+
T Consensus        53 ~~~~~~~~i~~~-~g-~i~~~iy~P~~---------~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrla  121 (311)
T d1jjia_          53 VERVEDRTIKGR-NG-DIRVRVYQQKP---------DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLA  121 (311)
T ss_dssp             CSEEEEEEEEET-TE-EEEEEEEESSS---------SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCT
T ss_pred             cceEEEEEEeCC-CC-cEEEEEEcCCC---------CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEeccccc
Confidence            345667888876 55 79999999964         239999999996543322 3344555554 46999999999987


Q ss_pred             CCCchhHHHhhccCCccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHh-c----CCCceeEEEecccC
Q 006979          536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAAL-A----FRDTFKAGASLYGV  607 (623)
Q Consensus       536 ~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~-~----~~~~f~a~v~~~g~  607 (623)
                      .++.-           ...++|+.++++|+.++   ..+|++||+|+|.|+||++++.++ .    ......+.+..+|.
T Consensus       122 p~~~~-----------p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~  190 (311)
T d1jjia_         122 PEHKF-----------PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPV  190 (311)
T ss_dssp             TTSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCC
T ss_pred             ccccc-----------chhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecce
Confidence            65422           23478999999999875   358999999999999999988765 2    24577899999998


Q ss_pred             CCHH
Q 006979          608 SIPV  611 (623)
Q Consensus       608 ~d~~  611 (623)
                      .|+.
T Consensus       191 ~~~~  194 (311)
T d1jjia_         191 VNFV  194 (311)
T ss_dssp             CCSS
T ss_pred             eeec
Confidence            8764

>d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Heroin esterase
species: Rhodococcus sp. [TaxId: 1831]

Probab=99.31  E-value=1.8e-12  Score=129.70  Aligned_cols=115  Identities=21%  Similarity=0.248  Sum_probs=87.7

Q ss_pred             CcEEEEeecCCCCe-EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc-CcCCHHhHHHH-cCceEEEEECCCCCC
Q 006979          460 LPELIEFPTEVPGQ-KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWT-SRGWAFVDVNYGGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~-~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~-~~~~~~~~~~a-~~G~~v~~~d~rGs~  536 (623)
                      ..+.+.+++. +|. .+.+++|.|++.      .++.|+||++|||.+.... .........++ +.||+|+.+|||...
T Consensus        49 ~~~~~~~~~~-~g~~~i~~~~~~P~~~------~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~p  121 (317)
T d1lzla_          49 SLRELSAPGL-DGDPEVKIRFVTPDNT------AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAP  121 (317)
T ss_dssp             EEEEEEECCS-TTCCCEEEEEEEESSC------CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred             eEEEEEEecC-CCCceEEEEEECCCCC------CCCCcEEEEecCcccccccccccchHHHhHHhhcCCccccccccccc
Confidence            4577888887 775 699999999863      4678999999999653322 23345555665 469999999999865


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHHHHHhC---CCCCCCceEEEEcChHHHHHHHHh
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~---~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      +..           ....++|+.++++|+.++   ..+|++||+|+|+|+||++++.++
T Consensus       122 e~~-----------~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~  169 (317)
T d1lzla_         122 ETT-----------FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTV  169 (317)
T ss_dssp             TSC-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHH
T ss_pred             ccc-----------ccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHH
Confidence            432           223478999999998764   248999999999999999999887

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=9.6e-10  Score=114.29  Aligned_cols=306  Identities=10%  Similarity=0.088  Sum_probs=183.4

Q ss_pred             CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCCCC----cEEEEeC
Q 006979           99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYKDQ----RLYKHSI  172 (623)
Q Consensus        99 ~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~~~----~l~~~d~  172 (623)
                      |+..||....+. +.+..+++.....+ +...+++..  ....-+.+-.+.+.+++|  .++|+-...|    .|+++|+
T Consensus        83 g~~y~~~~~~~~-~~~~~~~~~~~~~~-~~evllD~n--~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl  158 (430)
T d1qfma1          83 GKRYFYFYNTGL-QNQRVLYVQDSLEG-EARVFLDPN--ILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV  158 (430)
T ss_dssp             TTEEEEEEECSS-CSSCEEEEESSSSS-CCEEEECGG--GGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred             CCEEEEEEecCC-CccceEEeccccCC-Ceeeecchh--hhcccccceecceEecCCCCEEEEEeccccCchheeEEecc
Confidence            666666655544 45666777665433 445555421  111111111233566666  6777654444    4889999


Q ss_pred             CCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC-------CCCceeEEEEEEcCCCCcccceecccC---
Q 006979          173 DSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-------ALNSTTEIVAIALNGQNIQEPKVLVSG---  242 (623)
Q Consensus       173 ~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~-------~~~~~~~L~~idl~~g~~~~~~~l~~~---  242 (623)
                      .+|  +....+..    ..++..+.|++|++.++|++.+....       .......+++..+.+...+. ..+...   
T Consensus       159 ~tg--~~~~~~i~----~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~  231 (430)
T d1qfma1         159 DGA--KELPDVLE----RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDE  231 (430)
T ss_dssp             TTT--EEEEEEEE----EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTC
T ss_pred             Ccc--eecccccc----cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccC
Confidence            987  32221111    23456788999999999998654211       12334679999998765322 233332   


Q ss_pred             CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-----eeeeEEEcCCCCCccccCcCceeCCCCc-EEE
Q 006979          243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-----VYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF  316 (623)
Q Consensus       243 ~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~  316 (623)
                      ..+......|+||++|.........   ....+|++++.....     .....++....    ... ... ..+|. +|+
T Consensus       232 ~~~~~~~~~s~d~~~l~i~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~-~~~~~~~~~  302 (430)
T d1qfma1         232 PKWMGGAELSDDGRYVLLSIREGCD---PVNRLWYCDLQQESNGITGILKWVKLIDNFE----GEY-DYV-TNEGTVFTF  302 (430)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECSSS---SCCEEEEEEGGGSSSSSCSSCCCEEEECSSS----SCE-EEE-EEETTEEEE
T ss_pred             CceEEeeeccCCcceeeEEeeccCC---ccEEEEEeeCCCcccccccccceeEeecccc----cce-EEE-ecCCceeec
Confidence            2244456789999998766544322   356789999875421     01123333322    111 111 12344 777


Q ss_pred             EEeCCCCeeeEEEEecCCCe---EEEEeeccc-ccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979          317 VTDRKNGFWNLHKWIESNNE---VLAIYSLDA-EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~~~---~~~l~~~~~-~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~  392 (623)
                      .++......+|+.++++...   ++.|.++.. ....       ..+. +    .++.|++...+++..+|.+++++++.
T Consensus       303 ~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~-------~~~~-~----~~~~lvl~~~~~~~~~l~v~~~~~~~  370 (430)
T d1qfma1         303 KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE-------WVAC-V----RSNFLVLCYLHDVKNTLQLHDLATGA  370 (430)
T ss_dssp             EECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEE-------EEEE-E----TTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ccCcccccceeEEecCCCCccccceEEecccCcceee-------eEEE-E----ECCEEEEEEEcCCEeEEEEEECCCCc
Confidence            88874556889999876532   455654321 1110       0111 1    56788888889999999999999998


Q ss_pred             eeecccC-CcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          393 LSLLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       393 ~~~lt~~-~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ...+..+ ...+..+  ..+.+.++|..++..+|+.+|.+|+++++.
T Consensus       371 ~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         371 LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            8776544 3344444  456778999999999999999999999864

>d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: IroE-like
domain: Enterobactin and salmochelin hydrolase IroE
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=1.1e-12  Score=127.60  Aligned_cols=147  Identities=16%  Similarity=0.056  Sum_probs=107.1

Q ss_pred             CCCcEEEEeecCCCC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCC
Q 006979          458 FSLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       458 ~~~~~~i~~~~~~dg-~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      +.+.+.+.+.+. +| .++.++++.|.+  +++  ++++|+|+++||++....... ....+..+.+|++|+.++|++..
T Consensus        10 ~~~~~~~~~~s~-dg~~~~~~~v~~P~~--~~~--~~~yPvi~~lhG~~~~~~~~~-~~~~~~~~~~~~~vV~v~~~~~~   83 (265)
T d2gzsa1          10 FYHFSATSFDSV-DGTRHYRVWTAVPNT--TAP--ASGYPILYMLDGNAVMDRLDD-ELLKQLSEKTPPVIVAVGYQTNL   83 (265)
T ss_dssp             SEEEEEEEEECT-TSSCEEEEEEEEESS--CCC--TTCEEEEEESSHHHHHHHCCH-HHHHHHTTSCCCEEEEEEESSSS
T ss_pred             cceeEEEEEEcC-CCCEEEEEEEEcCCC--CCC--CCCceEEEEecCcchhhhHHH-HHHHHHHhcCCCeEEEecCCCCC
Confidence            446788999988 76 579999999988  554  788999999999853322111 23445667799999999999988


Q ss_pred             CCchhHHHhhccCC-----------------cc-chHH--HHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCC
Q 006979          537 GYGREFRERLLGRW-----------------GI-VDVN--DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD  596 (623)
Q Consensus       537 ~~g~~~~~~~~~~~-----------------g~-~~~~--D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~  596 (623)
                      .++...+......+                 +. ....  ....++.++.++..+|+++++|+|+|+||++++.++.+++
T Consensus        84 ~~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~~~  163 (265)
T d2gzsa1          84 PFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSS  163 (265)
T ss_dssp             SCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHHCS
T ss_pred             cCcccccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHcCc
Confidence            77665433221110                 11 1122  2234567777888899999999999999999999887778


Q ss_pred             ceeEEEecccCCCH
Q 006979          597 TFKAGASLYGVSIP  610 (623)
Q Consensus       597 ~f~a~v~~~g~~d~  610 (623)
                      .|.++++.+|...+
T Consensus       164 ~f~~~~a~s~~~~~  177 (265)
T d2gzsa1         164 YFRSYYSASPSLGR  177 (265)
T ss_dssp             SCSEEEEESGGGST
T ss_pred             ccCEEEEECCcccc
Confidence            89999999998754

>d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Mycobacterial antigens
domain: Antigen pt51/mpb51
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=8.9e-12  Score=121.21  Aligned_cols=135  Identities=14%  Similarity=0.150  Sum_probs=96.4

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC---CHHhHHHHcCceEEEEECCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---NLSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~---~~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      ..|.++++++..|..++..++.|.           .|+|+++||.+.+.....|   ....++..+++++|+.+|-... 
T Consensus         3 ~~e~~~v~s~~~~r~~~~~v~~~~-----------~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~~~-   70 (267)
T d1r88a_           3 PYENLMVPSPSMGRDIPVAFLAGG-----------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAY-   70 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEEEECCS-----------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTT-
T ss_pred             ceEEEEEecccCCceeeEEEECCC-----------CCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCCCC-
Confidence            567888887656888998887653           2899999996433222222   2356778889999999984221 


Q ss_pred             CCchhHHHhhccCCccchHHHHH--HHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          537 GYGREFRERLLGRWGIVDVNDCC--SCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~--~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      .+...+..     -+....++.+  +.+.++.++..+|++|++|.|+||||++++.++ ++|++|+++++++|..++.
T Consensus        71 ~~y~~~~~-----~~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~  143 (267)
T d1r88a_          71 SMYTNWEQ-----DGSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPS  143 (267)
T ss_dssp             STTSBCSS-----CTTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTT
T ss_pred             cCCccccc-----cccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCC
Confidence            12221111     1222344433  467788887779999999999999999999999 8999999999999988753

>d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Enterochelin esterase, catalytic domain
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=99.27  E-value=5e-12  Score=121.39  Aligned_cols=145  Identities=14%  Similarity=0.015  Sum_probs=91.6

Q ss_pred             CCCCCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCc----eEEEEE
Q 006979          455 KSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDV  530 (623)
Q Consensus       455 ~~~~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G----~~v~~~  530 (623)
                      +.....++++.+.+...|.+...++|.|.+  ++   .+++|+||++||++..... ......+.+.++|    ++++.+
T Consensus         9 ~~~~~~~~~~~~~S~~lg~~~~~~v~~P~~--~~---~~~~Pvvv~lhG~~~~~~~-~~~~~l~~l~~~~~~~~~i~v~~   82 (246)
T d3c8da2           9 QAPEIPAKEIIWKSERLKNSRRVWIFTTGD--VT---AEERPLAVLLDGEFWAQSM-PVWPVLTSLTHRQQLPPAVYVLI   82 (246)
T ss_dssp             CCCSSCCEEEEEEETTTTEEEEEEEEEC----------CCCCEEEESSHHHHHHTS-CCHHHHHHHHHTTSSCSCEEEEE
T ss_pred             CCCCCCcEEEEEECCCCCCEEEEEEEECCC--CC---CCCCCEEEEeCCcchhccC-cHHHHHHHHHHhCCCCceEEeec
Confidence            334567889999886358899999999987  32   5679999999998543332 2333455566555    445555


Q ss_pred             CCCCCCCCchhHHHhhccCCccchHHHHH-HHHHHHHh--CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          531 NYGGSTGYGREFRERLLGRWGIVDVNDCC-SCATFLVG--SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       531 d~rGs~~~g~~~~~~~~~~~g~~~~~D~~-~~~~~l~~--~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                      +...    +.....  ....+....+.+. .++.++.+  ...+|++|++|+|+|+||++++.++ +||++|+++++++|
T Consensus        83 ~~~~----~~~~~~--~~~~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg  156 (246)
T d3c8da2          83 DAID----TTHRAH--ELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSG  156 (246)
T ss_dssp             CCCS----HHHHHH--HSSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESC
T ss_pred             cccc----cccccc--ccCccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCc
Confidence            4332    111111  1111111111222 22333333  2347899999999999999999999 99999999999999


Q ss_pred             CCCHH
Q 006979          607 VSIPV  611 (623)
Q Consensus       607 ~~d~~  611 (623)
                      ..++.
T Consensus       157 ~~~~~  161 (246)
T d3c8da2         157 SYWWP  161 (246)
T ss_dssp             CTTTT
T ss_pred             ccccc
Confidence            87764

>d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Mycobacterial antigens
domain: Antigen 85c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=7.1e-12  Score=122.86  Aligned_cols=139  Identities=15%  Similarity=0.140  Sum_probs=95.1

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC---HHhHHHHcCceEEEEECCCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~---~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      .++.++++++..|..|+..+.           .+++|+|+++||.+.......|.   ...++++++|++|+.||-...+
T Consensus         5 ~v~~~~~~s~~~~r~i~~~~~-----------~~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~~~   73 (280)
T d1dqza_           5 PVEYLQVPSASMGRDIKVQFQ-----------GGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSS   73 (280)
T ss_dssp             CEEEEEEEETTTTEEEEEEEE-----------CCSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTC
T ss_pred             EEEEEEEecccCCCcceEEee-----------CCCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCCCC
Confidence            445667776545778887663           23469999999975433322222   3457888999999999954322


Q ss_pred             CCchhHHHhh--ccCCccchHHH--HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          537 GYGREFRERL--LGRWGIVDVND--CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       537 ~~g~~~~~~~--~~~~g~~~~~D--~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      .+. .|....  ...-+....++  +.+.+.+|.++..+|++|++|.|+||||++++.++ ++|++|+++++++|..++
T Consensus        74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~  151 (280)
T d1dqza_          74 FYT-DWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNP  151 (280)
T ss_dssp             TTS-BCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCT
T ss_pred             cCc-cccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCc
Confidence            222 111111  11111222333  34677788777779999999999999999999999 899999999999998765

>d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Ccg1/TafII250-interacting factor B (Cib)
domain: Ccg1/TafII250-interacting factor B (Cib)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.3e-12  Score=118.57  Aligned_cols=120  Identities=13%  Similarity=0.072  Sum_probs=83.3

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCH--HhHHHHcCceEEEEECCCCCCCCchhHHHhhcc
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG  548 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~--~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~  548 (623)
                      +|..++.....|..       +...|.||++||.+....  .|..  .+..|+++||.|+++|+||.|   ++-......
T Consensus        14 ~G~~i~y~~~~~~~-------~~~~~~vvllHG~~~~~~--~w~~~~~~~~la~~gy~via~D~~G~G---~S~~~~~~~   81 (208)
T d1imja_          14 QGQALFFREALPGS-------GQARFSVLLLHGIRFSSE--TWQNLGTLHRLAQAGYRAVAIDLPGLG---HSKEAAAPA   81 (208)
T ss_dssp             TTEEECEEEEECSS-------SCCSCEEEECCCTTCCHH--HHHHHTHHHHHHHTTCEEEEECCTTSG---GGTTSCCSS
T ss_pred             CCEEEEEEEecCCC-------CCCCCeEEEECCCCCChh--HHhhhHHHHHHHHcCCeEEEeeccccc---CCCCCCccc
Confidence            68889877777754       455678899999854332  3332  357899999999999999954   321111111


Q ss_pred             CCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          549 RWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       549 ~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .+.. ...+++.+.++.+      +.+++.|+|+|+||.+++.++ .+|+++++.|...|+.
T Consensus        82 ~~~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~  137 (208)
T d1imja_          82 PIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPIC  137 (208)
T ss_dssp             CTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSC
T ss_pred             ccchhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccc
Confidence            1211 1224444444443      246899999999999999888 8999999999999864

>d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Carboxylesterase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.26  E-value=8.9e-12  Score=123.86  Aligned_cols=133  Identities=18%  Similarity=0.193  Sum_probs=97.2

Q ss_pred             CCCcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc-cCcCCHHhHHHHcCc-eEEEEECCCCC
Q 006979          458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRG-WAFVDVNYGGS  535 (623)
Q Consensus       458 ~~~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~-~~~~~~~~~~~a~~G-~~v~~~d~rGs  535 (623)
                      ....+.+.++.  +|.+|.+.+|.|++.      .++.|+||++|||.+... ...+....+.++.+| +.|+.+|||..
T Consensus        43 ~~~~~~~~~~~--~g~~i~~~~y~P~~~------~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~  114 (308)
T d1u4na_          43 VAEVREFDMDL--PGRTLKVRMYRPEGV------EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLA  114 (308)
T ss_dssp             CSEEEEEEEEE--TTEEEEEEEEECTTC------CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCT
T ss_pred             CCcEEEEEEec--CCceEEEEEEecccc------CCCCCEEEEEecCeeeeeccccccchhhhhhhcccccccccccccc
Confidence            34556677765  688999999999873      457899999999965333 234456677777776 56888999975


Q ss_pred             CCCchhHHHhhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cC----CCceeEEEecccC
Q 006979          536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AF----RDTFKAGASLYGV  607 (623)
Q Consensus       536 ~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~----~~~f~a~v~~~g~  607 (623)
                      .+.           ......+|+.++++|+.++.   .+|++||+|+|+|+||++++.++ ..    ....++.+..++.
T Consensus       115 p~~-----------~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~  183 (308)
T d1u4na_         115 PEH-----------KFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPS  183 (308)
T ss_dssp             TTS-----------CTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCC
T ss_pred             ccc-----------ccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccc
Confidence            432           23345789999999998764   58999999999999999999887 32    2234555566665


Q ss_pred             CC
Q 006979          608 SI  609 (623)
Q Consensus       608 ~d  609 (623)
                      .+
T Consensus       184 ~~  185 (308)
T d1u4na_         184 TG  185 (308)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase
domain: Feruloyl esterase domain of the cellulosomal xylanase z
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.24  E-value=6.4e-11  Score=114.07  Aligned_cols=140  Identities=16%  Similarity=0.068  Sum_probs=91.3

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC-C----HHhHHHHcC----ceEEEEE
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-N----LSIQYWTSR----GWAFVDV  530 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~-~----~~~~~~a~~----G~~v~~~  530 (623)
                      +.+.+++.+..+|.++++++|.|++  |++  ++++|+||++||++........ .    .....+...    .+.+...
T Consensus        21 ~~~~~~~~S~~~g~~~~~~v~lP~~--y~~--~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T d1jjfa_          21 QVVNISYFSTATNSTRPARVYLPPG--YSK--DKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTP   96 (255)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECTT--CCT--TSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEE
T ss_pred             EEEEEEEEecCCCCEEEEEEEeCCC--CCC--CCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeec
Confidence            4667778765478999999999998  654  7899999999998654432211 1    122222222    2445555


Q ss_pred             CCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh--CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          531 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG--SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       531 d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~--~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +............       .......+.+.+.++.+  ...+|++||++.|+|+||++++.++ ++|++|+++++++|.
T Consensus        97 ~~~~~~~~~~~~~-------~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~  169 (255)
T d1jjfa_          97 NTNAAGPGIADGY-------ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAA  169 (255)
T ss_dssp             CCCCCCTTCSCHH-------HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCC
T ss_pred             ccccccccccccc-------cchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccC
Confidence            5443222111110       00112233344555554  3458999999999999999999988 899999999999987


Q ss_pred             CCH
Q 006979          608 SIP  610 (623)
Q Consensus       608 ~d~  610 (623)
                      .++
T Consensus       170 ~~~  172 (255)
T d1jjfa_         170 PNT  172 (255)
T ss_dssp             TTS
T ss_pred             cCC
Confidence            654

>d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Atu1826-like
domain: Hypothetical protein Atu1826
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.21  E-value=3.8e-11  Score=112.80  Aligned_cols=129  Identities=19%  Similarity=0.269  Sum_probs=96.0

Q ss_pred             EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcc---cCcCCHHhHHHHcCceEEEEECCCCCCCCc
Q 006979          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGSTGYG  539 (623)
Q Consensus       463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~---~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g  539 (623)
                      +|.++.+ .| +|++++..|.        ++..|++|++||.|....   .......+..|+++||.|+.+||||.+.+.
T Consensus         2 ev~i~g~-~G-~Le~~~~~~~--------~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~   71 (218)
T d2i3da1           2 EVIFNGP-AG-RLEGRYQPSK--------EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQ   71 (218)
T ss_dssp             EEEEEET-TE-EEEEEEECCS--------STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCC
T ss_pred             cEEEeCC-Cc-cEEEEEeCCC--------CCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCc
Confidence            3678887 66 7999987664        345689999998753222   122335678899999999999999977664


Q ss_pred             hhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCC
Q 006979          540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVS  608 (623)
Q Consensus       540 ~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~  608 (623)
                      ..+      +++..+.+|..++++|+..++..+ .++.+.|+|+||++++.++.......+.++..|..
T Consensus        72 G~~------~~~~~e~~d~~aa~~~~~~~~~~~-~~~~~~g~S~G~~~a~~~a~~~~~~~~~~~~~~~~  133 (218)
T d2i3da1          72 GEF------DHGAGELSDAASALDWVQSLHPDS-KSCWVAGYSFGAWIGMQLLMRRPEIEGFMSIAPQP  133 (218)
T ss_dssp             SCC------CSSHHHHHHHHHHHHHHHHHCTTC-CCEEEEEETHHHHHHHHHHHHCTTEEEEEEESCCT
T ss_pred             ccc------ccchhHHHHHHHHHhhhhcccccc-cceeEEeeehHHHHHHHHHHhhccccceeeccccc
Confidence            432      456778899999999999886543 57899999999999999983333456666666653

>d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Putative serine hydrolase Ydr428c
domain: Putative serine hydrolase Ydr428c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=9.2e-11  Score=113.19  Aligned_cols=112  Identities=19%  Similarity=0.127  Sum_probs=83.4

Q ss_pred             CCCCCEEEEecCCCCCccc---CcCCH----HhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHH
Q 006979          492 EEKPPLLVKSHGGPTSEAR---GILNL----SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF  564 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~---~~~~~----~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~  564 (623)
                      .++.|+||++|||.+....   ..+..    .++.++++||.|+.+|||.+++..           ....++|+.++++|
T Consensus        28 ~~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~~-----------~~~~~~d~~~~~~~   96 (263)
T d1vkha_          28 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEIT-----------NPRNLYDAVSNITR   96 (263)
T ss_dssp             TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSC-----------TTHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcchh-----------hhHHHHhhhhhhhc
Confidence            4567999999998643222   22332    345556899999999999876532           12347899999999


Q ss_pred             HHhCCCCCCCceEEEEcChHHHHHHHHh-cCC-----------------CceeEEEecccCCCHHHhhhh
Q 006979          565 LVGSGKADEKRLCITGGSAGGYTTLAAL-AFR-----------------DTFKAGASLYGVSIPVIISEE  616 (623)
Q Consensus       565 l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~-----------------~~f~a~v~~~g~~d~~~~~~~  616 (623)
                      +.++  .++++|+|+|+|+||++++.++ ..+                 ....+.+..+++.|+..+...
T Consensus        97 l~~~--~~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (263)
T d1vkha_          97 LVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIE  164 (263)
T ss_dssp             HHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHH
T ss_pred             cccc--ccccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhh
Confidence            9987  4678999999999999999877 332                 256888889999998776543

>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Gastric lipase
domain: Gastric lipase
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=99.17  E-value=2.7e-11  Score=122.92  Aligned_cols=137  Identities=18%  Similarity=0.087  Sum_probs=91.2

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC----CHHhHHHHcCceEEEEECCCCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGGS  535 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~----~~~~~~~a~~G~~v~~~d~rGs  535 (623)
                      ..|...+++. ||..|..+-+.....  .....++.|.||++||.+.+......    ...+.+|+++||.|+++|+||.
T Consensus        26 ~~e~h~v~t~-DG~~l~~~ri~~~~~--~~~~~~~~~~vlllHG~~~~~~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~  102 (377)
T d1k8qa_          26 PAEEYEVVTE-DGYILGIDRIPYGRK--NSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN  102 (377)
T ss_dssp             CCEEEEEECT-TSEEEEEEEECSCSS--CCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred             CceEEEEEcC-CCCEEEEEEecCCCC--CCccCCCCCeEEEECCCccchhHHhhcCccchHHHHHHHCCCEEEEEcCCCC
Confidence            4577788888 998887654432110  11124567899999998655443221    2468899999999999999997


Q ss_pred             CCCchhHH----HhhccCC--ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEE
Q 006979          536 TGYGREFR----ERLLGRW--GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAG  601 (623)
Q Consensus       536 ~~~g~~~~----~~~~~~~--g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~  601 (623)
                      |.....-.    ......+  ......|+.++++++.+.-  ..++|.++||||||.+++.++ .+|+.++.+
T Consensus       103 G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~--g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l  173 (377)
T d1k8qa_         103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRI  173 (377)
T ss_dssp             TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTE
T ss_pred             CCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHc--CCCCEEEEEecchHHHHHHHHHhhhhhhhhc
Confidence            76543210    0000111  1223568889999987752  237999999999999999888 777654433

>d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Proline iminopeptidase-like
domain: Tricorn interacting factor F1
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.15  E-value=1e-10  Score=113.38  Aligned_cols=121  Identities=21%  Similarity=0.225  Sum_probs=84.4

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|.+|+...+.+.         +..|.||++||+++...  .|......++++||.|+++|+||.|.+...    ....+
T Consensus        10 ~g~~i~y~~~g~~---------~~~~~iv~lHG~~g~~~--~~~~~~~~~~~~~~~vi~~D~~G~G~S~~~----~~~~~   74 (290)
T d1mtza_          10 NGIYIYYKLCKAP---------EEKAKLMTMHGGPGMSH--DYLLSLRDMTKEGITVLFYDQFGCGRSEEP----DQSKF   74 (290)
T ss_dssp             TTEEEEEEEECCS---------SCSEEEEEECCTTTCCS--GGGGGGGGGGGGTEEEEEECCTTSTTSCCC----CGGGC
T ss_pred             CCEEEEEEEcCCC---------CCCCeEEEECCCCCchH--HHHHHHHHHHHCCCEEEEEeCCCCcccccc----ccccc
Confidence            7888886666442         22478999999865433  344556667889999999999997654321    01111


Q ss_pred             c-cchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCHH
Q 006979          551 G-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       551 g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~~  611 (623)
                      . ....+|+.+.++++..     .+++.++|||+||.+++.++ .+|+++++.|...++....
T Consensus        75 ~~~~~~~~l~~ll~~l~~-----~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~  132 (290)
T d1mtza_          75 TIDYGVEEAEALRSKLFG-----NEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP  132 (290)
T ss_dssp             SHHHHHHHHHHHHHHHHT-----TCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHH
T ss_pred             cccchhhhhhhhhccccc-----ccccceecccccchhhhhhhhcChhhheeeeecccccCcc
Confidence            1 1224555555555532     36899999999999999888 8899999999988876543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.13  E-value=6.6e-09  Score=100.82  Aligned_cols=238  Identities=11%  Similarity=0.036  Sum_probs=144.1

Q ss_pred             eEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          149 AFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       149 ~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      ..++++|  .+++....++.|.++|+.++ .....+...     .......++++|+.+++.....        ..+.++
T Consensus        36 ~va~spdG~~l~v~~~~~~~i~v~d~~t~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  101 (301)
T d1l0qa2          36 GAVISPDGTKVYVANAHSNDVSIIDTATN-NVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS--------STLSVI  101 (301)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEETTTT-EEEEEEECS-----SSEEEEEECTTSSEEEEEETTT--------TEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCEEEEEECCCC-ceeeeeecc-----cccccccccccccccccccccc--------ceeeec
Confidence            3556655  56667767788999999876 223333332     2234577999999887765533        457888


Q ss_pred             EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCc
Q 006979          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP  306 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (623)
                      +..+++   ...............|+|||+++++....       ...+.+.+.....   ....+...     ..+...
T Consensus       102 ~~~~~~---~~~~~~~~~~~~~~~~~~dg~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~  163 (301)
T d1l0qa2         102 DTTSNT---VAGTVKTGKSPLGLALSPDGKKLYVTNNG-------DKTVSVINTVTKA---VINTVSVG-----RSPKGI  163 (301)
T ss_dssp             ETTTTE---EEEEEECSSSEEEEEECTTSSEEEEEETT-------TTEEEEEETTTTE---EEEEEECC-----SSEEEE
T ss_pred             ccccce---eeeeccccccceEEEeecCCCeeeeeecc-------ccceeeeeccccc---eeeecccC-----CCceEE
Confidence            888776   33333333344557899999998776533       2346777776652   22223322     234567


Q ss_pred             eeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                      .|++|++.+++...  +...+...+....+.............         ..+.   ++++.+++.........|+++
T Consensus       164 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~g~~~~v~~~~~~~~~v~v~  229 (301)
T d1l0qa2         164 AVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSG---------IAVN---PEGTKAYVTNVDKYFNTVSMI  229 (301)
T ss_dssp             EECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEE---------EEEC---TTSSEEEEEEECSSCCEEEEE
T ss_pred             Eeeccccceeeecc--cccccccccccceeeeecccccCCcce---------eecc---ccccccccccccceeeeeeee
Confidence            89999995555554  222344455555554443332222112         2222   277888777665566779999


Q ss_pred             eCCCCcee-ecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          387 DDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       387 d~~~~~~~-~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      |+.+++.. .+..+. ....+  +++++++|+....   ...|.++|++++++
T Consensus       230 D~~t~~~~~~~~~~~-~~~~va~spdg~~l~va~~~---~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         230 DTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSF---CNTVSVIDTATNTI  278 (301)
T ss_dssp             ETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEE
T ss_pred             ecCCCeEEEEEcCCC-CEEEEEEeCCCCEEEEEECC---CCeEEEEECCCCeE
Confidence            99887654 344332 23333  7888887766542   24788999988864

>d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Hypothetical protein TT1662
domain: Hypothetical protein TT1662
species: Thermus thermophilus [TaxId: 274]

Probab=99.13  E-value=8e-12  Score=118.87  Aligned_cols=114  Identities=13%  Similarity=0.086  Sum_probs=74.5

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccc---h-HHHHHHHHHHHHhCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV---D-VNDCCSCATFLVGSG  569 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~---~-~~D~~~~~~~l~~~~  569 (623)
                      +.|+||++||.+.  ....+...++.|+++||.|+++|+||.|.............+...   . ..++.++..++...+
T Consensus        23 ~~~~vl~lHG~~~--~~~~~~~~~~~la~~G~~V~~~D~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (238)
T d1ufoa_          23 PKALLLALHGLQG--SKEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAE  100 (238)
T ss_dssp             CCEEEEEECCTTC--CHHHHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCC--CHHHHHHHHHHHHHCCCEEEEecCCCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhcc
Confidence            4599999999853  333555678889999999999999997654322111111111011   1 122333333444456


Q ss_pred             CCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          570 KADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       570 ~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      .+++++|+++|+|+||++++.++ .+|+ ++++++..+..+.
T Consensus       101 ~~~~~~v~~~G~S~Gg~~a~~~~~~~p~-~~~~~~~~~~~~~  141 (238)
T d1ufoa_         101 RRFGLPLFLAGGSLGAFVAHLLLAEGFR-PRGVLAFIGSGFP  141 (238)
T ss_dssp             HHHCCCEEEEEETHHHHHHHHHHHTTCC-CSCEEEESCCSSC
T ss_pred             ccCCceEEEEEecccHHHHHHHHhcCcc-hhheeeeeeeccc
Confidence            67889999999999999999988 6665 5666666665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.13  E-value=6.5e-09  Score=103.28  Aligned_cols=263  Identities=14%  Similarity=0.116  Sum_probs=149.0

Q ss_pred             ccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC-CCCCccceeeeecCCceEEEeCC-EEEEEeCC
Q 006979           86 GASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYK  163 (623)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~-p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~  163 (623)
                      ..+..|+++.|++.+.|||++...   ++  |++++++++ +..... +..         -+...+++++| .+++....
T Consensus        37 ~~~~~lEG~~~D~~G~Ly~~D~~~---g~--I~ri~p~g~-~~~~~~~~~~---------~~p~gla~~~dG~l~va~~~  101 (319)
T d2dg1a1          37 KKGLQLEGLNFDRQGQLFLLDVFE---GN--IFKINPETK-EIKRPFVSHK---------ANPAAIKIHKDGRLFVCYLG  101 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTT---CE--EEEECTTTC-CEEEEEECSS---------SSEEEEEECTTSCEEEEECT
T ss_pred             cCCcCcEeCEECCCCCEEEEECCC---CE--EEEEECCCC-eEEEEEeCCC---------CCeeEEEECCCCCEEEEecC
Confidence            356678999998855699998653   43  788877622 222222 221         01123455555 56655432


Q ss_pred             ----CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceec
Q 006979          164 ----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL  239 (623)
Q Consensus       164 ----~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l  239 (623)
                          .+.++.++..++  ....+.... ....+.++..++|+|+ +++......  .......+++++.+++.   ++.+
T Consensus       102 ~~~~~~~i~~~~~~~~--~~~~~~~~~-~~~~~~nd~~~d~~G~-l~vtd~~~~--~~~~~g~v~~~~~dg~~---~~~~  172 (319)
T d2dg1a1         102 DFKSTGGIFAATENGD--NLQDIIEDL-STAYCIDDMVFDSKGG-FYFTDFRGY--STNPLGGVYYVSPDFRT---VTPI  172 (319)
T ss_dssp             TSSSCCEEEEECTTSC--SCEEEECSS-SSCCCEEEEEECTTSC-EEEEECCCB--TTBCCEEEEEECTTSCC---EEEE
T ss_pred             CCccceeEEEEcCCCc--eeeeeccCC-CcccCCcceeEEeccc-eeecccccc--cccCcceeEEEecccce---eEEE
Confidence                235788877765  333332221 2245677899999997 444332211  11234789999998876   5666


Q ss_pred             ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-eee--eEEEcCCCCCccccCcCceeCCCCcEEE
Q 006979          240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYK--RVCVAGFDPTIVESPTEPKWSSKGELFF  316 (623)
Q Consensus       240 ~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~ws~DG~l~~  316 (623)
                      ..+....++..|||||++|++....       ..+|++++++..+. ...  ..........  ..+...+..+||.|| 
T Consensus       173 ~~~~~~pnGia~s~dg~~lyvad~~-------~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~--~~PdGl~vD~~G~l~-  242 (319)
T d2dg1a1         173 IQNISVANGIALSTDEKVLWVTETT-------ANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLY-  242 (319)
T ss_dssp             EEEESSEEEEEECTTSSEEEEEEGG-------GTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEE-
T ss_pred             eeccceeeeeeeccccceEEEeccc-------CCceEEEEEcCCCceeccccceeeeccCCc--cceeeeeEcCCCCEE-
Confidence            6555556678999999999887532       44699999876543 111  1111111101  234567888899654 


Q ss_pred             EEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEE---CCeEEEEEEeCCC
Q 006979          317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ---NGRSYLGILDDFG  390 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~---~g~~~L~~~d~~~  390 (623)
                      +++.  +...|.++|+++.....+.-.....+...   ......+.+   +...++.++..   .+...||+++...
T Consensus       243 Va~~--~~g~V~~~~p~G~~l~~i~~P~~~~~~~~---~~~~~~~~~---~~~~~~~t~~~~~~~~~g~l~~~~~~~  311 (319)
T d2dg1a1         243 VAMY--GQGRVLVFNKRGYPIGQILIPGRDEGHML---RSTHPQFIP---GTNQLIICSNDIEMGGGSMLYTVNGFA  311 (319)
T ss_dssp             EEEE--TTTEEEEECTTSCEEEEEECTTGGGTCSC---BCCEEEECT---TSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred             EEEc--CCCEEEEECCCCcEEEEEeCCCcCCCcCc---eeeeEEEeC---CCCEEEEEcCCCCcCCceeEEEEeCCC
Confidence            5554  44579999987655555542111111111   111233331   45566666542   3456788887653

>d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase/thioesterase 1
domain: Uncharacterized protein Mll8374
species: Mesorhizobium loti [TaxId: 381]

Probab=99.10  E-value=3.2e-11  Score=112.57  Aligned_cols=115  Identities=12%  Similarity=0.028  Sum_probs=79.7

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC-----ccchHHHHHHHHHHHH
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW-----GIVDVNDCCSCATFLV  566 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~-----g~~~~~D~~~~~~~l~  566 (623)
                      .+..|+||++||.+.  ....+...++.++. ++.++.++.+.....+..|........     -..+.+++.+.++++.
T Consensus        20 ~~~~p~vv~lHG~g~--~~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   96 (209)
T d3b5ea1          20 KESRECLFLLHGSGV--DETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAA   96 (209)
T ss_dssp             SSCCCEEEEECCTTB--CTTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCC--CHHHHHHHHHHhcc-CcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHHH
Confidence            466899999999843  33455566676665 688888876532222221111110000     0122455667777888


Q ss_pred             hCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          567 GSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       567 ~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                      ++..+|++||+|+|+|+||++++.++ .+|++|+++|+++|...
T Consensus        97 ~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~  140 (209)
T d3b5ea1          97 KRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPV  140 (209)
T ss_dssp             HHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCC
T ss_pred             HHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccc
Confidence            77779999999999999999999999 89999999999999653

>d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase/thioesterase 1
domain: Carboxylesterase
species: Bacillus cereus [TaxId: 1396]

Probab=99.10  E-value=7.2e-11  Score=109.30  Aligned_cols=116  Identities=15%  Similarity=0.045  Sum_probs=80.3

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC-----ccchHHHHHHHHHHHH
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW-----GIVDVNDCCSCATFLV  566 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~-----g~~~~~D~~~~~~~l~  566 (623)
                      +++.|+||++||++  .....+...+..++ .++.|+.++.......+..+........     .....+++...++++.
T Consensus        11 ~~~~P~vi~lHG~g--~~~~~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   87 (202)
T d2h1ia1          11 DTSKPVLLLLHGTG--GNELDLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDEAA   87 (202)
T ss_dssp             CTTSCEEEEECCTT--CCTTTTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCC--CCHHHHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            56689999999974  33345556666666 5788888875432222111111111000     0112455777777778


Q ss_pred             hCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCCH
Q 006979          567 GSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSIP  610 (623)
Q Consensus       567 ~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d~  610 (623)
                      ++..+|++||+++|+|+||++++.++ .+++.++++++.+|....
T Consensus        88 ~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~  132 (202)
T d2h1ia1          88 KEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPR  132 (202)
T ss_dssp             HHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSC
T ss_pred             HhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCc
Confidence            88889999999999999999999999 899999999999997643

>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloalkane dehalogenase
domain: Haloalkane dehalogenase
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=99.08  E-value=3e-10  Score=112.09  Aligned_cols=118  Identities=16%  Similarity=0.121  Sum_probs=85.2

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|.+++..-.-+.         ...|+||++||.+..  ...|......|+++||.|+++|.||.|.+...-      ..
T Consensus        32 ~g~~~~y~~~G~~---------~~~p~llllHG~~~~--~~~~~~~~~~l~~~~~~vi~~Dl~G~G~S~~~~------~~   94 (310)
T d1b6ga_          32 PGLRAHYLDEGNS---------DAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV------DE   94 (310)
T ss_dssp             TTCEEEEEEEECT---------TCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTTSCEES------CG
T ss_pred             CCEEEEEEEecCC---------CCCCEEEEECCCCCc--hHHHHHHHHHhhccCceEEEeeecCcccccccc------cc
Confidence            7888885544332         335899999998643  345667788899999999999999976654311      11


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      .....++..+.+..++++  .+.+++.++|||+||.+++.++ .+|++++++|...+.
T Consensus        95 ~~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~  150 (310)
T d1b6ga_          95 EDYTFEFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC  150 (310)
T ss_dssp             GGCCHHHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred             ccccccccccchhhhhhh--ccccccccccceecccccccchhhhccccceEEEEcCc
Confidence            112355555555555544  2246899999999999999988 899999999988664

>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Aclacinomycin methylesterase RdmC
domain: Aclacinomycin methylesterase RdmC
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.08  E-value=8.7e-10  Score=107.60  Aligned_cols=119  Identities=13%  Similarity=0.039  Sum_probs=82.3

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCC-HHhHHHHcCceEEEEECCCCCCCCchhHHHhhccC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR  549 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~-~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~  549 (623)
                      +|.+|+...+-+.          ..|.||++||.+...  ..|. ...+.++++||.|+++|+||.|.+......  .. 
T Consensus         8 g~~~i~y~~~G~~----------~~p~vvl~HG~~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~--~~-   72 (297)
T d1q0ra_           8 GDVELWSDDFGDP----------ADPALLLVMGGNLSA--LGWPDEFARRLADGGLHVIRYDHRDTGRSTTRDFA--AH-   72 (297)
T ss_dssp             TTEEEEEEEESCT----------TSCEEEEECCTTCCG--GGSCHHHHHHHHTTTCEEEEECCTTSTTSCCCCTT--TS-
T ss_pred             CCEEEEEEEecCC----------CCCEEEEECCCCcCh--hHHHHHHHHHHHhCCCEEEEEeCCCCccccccccc--cc-
Confidence            5778886666332          237889999995433  3443 457889999999999999997665332110  11 


Q ss_pred             CccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       550 ~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                        ....+|+.+.+..+++.  ++.+++.++|||+||.+++.++ .+|++++++|...+..
T Consensus        73 --~~~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~  128 (297)
T d1q0ra_          73 --PYGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG  128 (297)
T ss_dssp             --CCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred             --ccccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEcccc
Confidence              12345554444444433  2346899999999999999998 8999999999887764

>d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Epoxide hydrolase
domain: Mammalian epoxide hydrolase, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.5e-10  Score=108.93  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=84.8

Q ss_pred             EeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHH
Q 006979          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE  544 (623)
Q Consensus       465 ~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~  544 (623)
                      .+... +|.+|+..-+           +. -|.||++||.+.+  ...|...++.|+++||.|+++|+||.|.....   
T Consensus        15 ~v~~~-~g~~i~y~~~-----------G~-gp~vlllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~---   76 (322)
T d1zd3a2          15 YVTVK-PRVRLHFVEL-----------GS-GPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKGYGESSAP---   76 (322)
T ss_dssp             EEEEE-TTEEEEEEEE-----------CC-SSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEEECTTSTTSCCC---
T ss_pred             EEEEC-CCCEEEEEEE-----------cC-CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEeccccccccccc---
Confidence            44555 7888885433           21 2789999998544  44677788999999999999999996543221   


Q ss_pred             hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       545 ~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                         ........++....+..++++  ++.+++.++|||+||.+++.++ .+|+++++.|...+
T Consensus        77 ---~~~~~~~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~  134 (322)
T d1zd3a2          77 ---PEIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT  134 (322)
T ss_dssp             ---SCGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred             ---cccccccccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcc
Confidence               111122355555555555543  2357999999999999999999 89999999998764

>d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Chloroperoxidase L
species: Streptomyces lividans [TaxId: 1916]

Probab=98.99  E-value=2e-09  Score=103.41  Aligned_cols=118  Identities=17%  Similarity=0.170  Sum_probs=81.4

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHh
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER  545 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~  545 (623)
                      +++. ||.+|+...+-|++       +   |.||++||.+..  ...|...+..|+++||.|+++|+||.|.....    
T Consensus         3 i~~~-dG~~l~y~~~G~~~-------~---~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~----   65 (275)
T d1a88a_           3 VTTS-DGTNIFYKDWGPRD-------G---LPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP----   65 (275)
T ss_dssp             EECT-TSCEEEEEEESCTT-------S---CEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC----
T ss_pred             EEec-CCCEEEEEEecCCC-------C---CeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEecccccccccc----
Confidence            5566 89999987886654       2   568889998543  34566778889999999999999996644321    


Q ss_pred             hccCCc-cchHHHHHHHHHHHHhCCCCCCCceEEEEcCh-HHHHHHHHh-cCCCceeEEEecccC
Q 006979          546 LLGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSA-GGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       546 ~~~~~g-~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~-GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                       ...+. ....+|+.+.++++      +.+++.++|+|+ ||.+++.++ .+|++++..|...+.
T Consensus        66 -~~~~~~~~~~~~~~~~l~~l------~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~  123 (275)
T d1a88a_          66 -STGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAV  123 (275)
T ss_dssp             -SSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCC
T ss_pred             -cccccccccccccccccccc------cccccccccccccccchhhcccccCcchhhhhhhhccc
Confidence             11111 11234555555554      346788899887 555666666 889999999988764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=5.2e-08  Score=95.87  Aligned_cols=265  Identities=12%  Similarity=0.079  Sum_probs=140.7

Q ss_pred             ceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          148 GAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       148 ~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      ...++++|  .|++....++.|.+++++.+....+.....  ..........|||||++|+....+.        ..+..
T Consensus        40 ~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~--~~~~~p~~l~~spDg~~l~v~~~~~--------~~v~~  109 (333)
T d1ri6a_          40 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES--ALPGSLTHISTDHQGQFVFVGSYNA--------GNVSV  109 (333)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE--ECSSCCSEEEECTTSSEEEEEETTT--------TEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec--ccCCCceEEEEcCCCCEEeecccCC--------Cceee
Confidence            34566666  566666667778777776431122222211  0012233478999999987765432        34555


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceee-e-EEEcCCCCCccccC
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-R-VCVAGFDPTIVESP  303 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~-~-~~~~~~~~~~~~~~  303 (623)
                      ++.+.....................+||||++++.....       ...+.+++......... . ....... .  ..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~-g--~~p  179 (333)
T d1ri6a_         110 TRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-------QDRICLFTVSDDGHLVAQDPAEVTTVE-G--AGP  179 (333)
T ss_dssp             EEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEEEECST-T--CCE
T ss_pred             eccccccceecccccCCCccceEEEeeecceeeeccccc-------cceeeEEEeccCCcceeeeceeeeeec-C--CCc
Confidence            555544311112222333344557899999998877643       33477777766533111 1 1111111 1  233


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEE---eecccccccccccccCcceeEEeecCCCCEEEEEEEECCe
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI---YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR  380 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l---~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~  380 (623)
                      ....|++++..++......+...++.++.........   ...........+   .....+   +++++.++......+.
T Consensus       180 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---s~d~~~~~~~~~~~~~  253 (333)
T d1ri6a_         180 RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW---AADIHI---TPDGRHLYACDRTASL  253 (333)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC---EEEEEE---CTTSSEEEEEETTTTE
T ss_pred             cEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc---ceeEEE---ecccCceeeecccCCe
Confidence            5678999998555554435566666665554433322   111111111111   111222   3478878777766778


Q ss_pred             EEEEEEeCCCCceeeccc--CCcceE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCcceee
Q 006979          381 SYLGILDDFGHSLSLLDI--PFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       381 ~~L~~~d~~~~~~~~lt~--~~~~v~--~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      ..++.++.+++..+....  ......  .++++++++++... ....-.+|.+|.++|+++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~-~~~~v~v~~id~~tG~l~~~  315 (333)
T d1ri6a_         254 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ-KSHHISVYEIVGEQGLLHEK  315 (333)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT-TTCEEEEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEEC-CCCeEEEEEEECCCCcEEEE
Confidence            888888877665543321  111111  34788888765543 22334588889888876554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.97  E-value=7.2e-08  Score=93.18  Aligned_cols=231  Identities=12%  Similarity=0.088  Sum_probs=131.8

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      +|+++..++.|.++|++++ ...+.+..+     ......++||||++|+......        ..|.++|+.+++.  +
T Consensus         4 ~yV~~~~~~~v~v~D~~t~-~~~~~i~~g-----~~p~~va~spdG~~l~v~~~~~--------~~i~v~d~~t~~~--~   67 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSN-KVTATIPVG-----SNPMGAVISPDGTKVYVANAHS--------NDVSIIDTATNNV--I   67 (301)
T ss_dssp             EEEEETTTTEEEEEETTTT-EEEEEEECS-----SSEEEEEECTTSSEEEEEEGGG--------TEEEEEETTTTEE--E
T ss_pred             EEEEECCCCEEEEEECCCC-eEEEEEECC-----CCceEEEEeCCCCEEEEEECCC--------CEEEEEECCCCce--e
Confidence            3555667788999999887 223344432     2234578999999987654432        5799999998862  2


Q ss_pred             eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEE
Q 006979          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (623)
Q Consensus       237 ~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~  316 (623)
                      ..+..+ .......|++||++++.....       ...+.+.+..++.   ....+...     .......|+|||+.++
T Consensus        68 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~dg~~~~  131 (301)
T d1l0qa2          68 ATVPAG-SSPQGVAVSPDGKQVYVTNMA-------SSTLSVIDTTSNT---VAGTVKTG-----KSPLGLALSPDGKKLY  131 (301)
T ss_dssp             EEEECS-SSEEEEEECTTSSEEEEEETT-------TTEEEEEETTTTE---EEEEEECS-----SSEEEEEECTTSSEEE
T ss_pred             eeeecc-ccccccccccccccccccccc-------cceeeecccccce---eeeecccc-----ccceEEEeecCCCeee
Confidence            333322 233456799999988766533       3347777877652   23333322     2345678999999544


Q ss_pred             EEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeec
Q 006979          317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL  396 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~l  396 (623)
                      ....  ....+..++..+++.............         +.+   +++++.+++.....+  .+...+....+....
T Consensus       132 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  195 (301)
T d1l0qa2         132 VTNN--GDKTVSVINTVTKAVINTVSVGRSPKG---------IAV---TPDGTKVYVANFDSM--SISVIDTVTNSVIDT  195 (301)
T ss_dssp             EEET--TTTEEEEEETTTTEEEEEEECCSSEEE---------EEE---CTTSSEEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred             eeec--cccceeeeeccccceeeecccCCCceE---------EEe---eccccceeeeccccc--ccccccccceeeeec
Confidence            4443  223456667777664444332211111         122   236777776654333  344445555544332


Q ss_pred             ccCCcceEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          397 DIPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       397 t~~~~~v~~--~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      .........  ++.+++.+++...+ .....|+++|+.+++.
T Consensus       196 ~~~~~~~~~~~~~~~g~~~~v~~~~-~~~~~v~v~D~~t~~~  236 (301)
T d1l0qa2         196 VKVEAAPSGIAVNPEGTKAYVTNVD-KYFNTVSMIDTGTNKI  236 (301)
T ss_dssp             EECSSEEEEEEECTTSSEEEEEEEC-SSCCEEEEEETTTTEE
T ss_pred             ccccCCcceeecccccccccccccc-ceeeeeeeeecCCCeE
Confidence            222222222  26677777665443 3345789999888763

>d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Epoxide hydrolase
domain: Bacterial epoxide hydrolase
species: Agrobacterium radiobacter [TaxId: 358]

Probab=98.96  E-value=2.6e-09  Score=103.58  Aligned_cols=123  Identities=12%  Similarity=0.068  Sum_probs=82.7

Q ss_pred             EEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhH
Q 006979          463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF  542 (623)
Q Consensus       463 ~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~  542 (623)
                      ...+..  +|.+++....           +. -|.||++||.+..  ...|...+..|++ +|.|+++|+||.|......
T Consensus        10 ~~~~~~--~~~~l~y~~~-----------G~-gp~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~G~s~~~~   72 (293)
T d1ehya_          10 HYEVQL--PDVKIHYVRE-----------GA-GPTLLLLHGWPGF--WWEWSKVIGPLAE-HYDVIVPDLRGFGDSEKPD   72 (293)
T ss_dssp             EEEEEC--SSCEEEEEEE-----------EC-SSEEEEECCSSCC--GGGGHHHHHHHHT-TSEEEEECCTTSTTSCCCC
T ss_pred             ceEEEE--CCEEEEEEEE-----------CC-CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCcccCCcccc
Confidence            445555  5777874432           21 2678899998543  3466677777865 8999999999966433211


Q ss_pred             HHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       543 ~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                          .........++....+..++++  .+.+++.|+|||+||.+++.++ .+|+++.++|...++.
T Consensus        73 ----~~~~~~~~~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~  133 (293)
T d1ehya_          73 ----LNDLSKYSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQ  133 (293)
T ss_dssp             ----TTCGGGGCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSC
T ss_pred             ----ccccccccchhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeeccC
Confidence                1111223345555555544443  2346899999999999999988 8999999999988753

>d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Bromoperoxidase A1
species: Streptomyces aureofaciens [TaxId: 1894]

Probab=98.96  E-value=3.3e-09  Score=101.83  Aligned_cols=116  Identities=14%  Similarity=0.116  Sum_probs=77.3

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHh
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER  545 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~  545 (623)
                      +++. ||.+++...+           ++. |.||++||.+.+  ...|...++.|+++||.|+++|+||.|.+...    
T Consensus         3 ~~t~-dG~~l~y~~~-----------G~g-~~ivlvHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~----   63 (274)
T d1a8qa_           3 CTTR-DGVEIFYKDW-----------GQG-RPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPV----   63 (274)
T ss_dssp             EECT-TSCEEEEEEE-----------CSS-SEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC----
T ss_pred             EECc-CCCEEEEEEE-----------CCC-CeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCCCcccccc----
Confidence            4566 8888885433           211 457889998533  34566778889999999999999997654321    


Q ss_pred             hccCCcc-chHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh--cCCCceeEEEecccC
Q 006979          546 LLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL--AFRDTFKAGASLYGV  607 (623)
Q Consensus       546 ~~~~~g~-~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~--~~~~~f~a~v~~~g~  607 (623)
                       ...+.. ...+|+.+.++.+      ..+++.++|||+||.+++..+  .+|+++++.+...+.
T Consensus        64 -~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~  121 (274)
T d1a8qa_          64 -WDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAI  121 (274)
T ss_dssp             -SSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred             -cccccchhhHHHHHHHHHHh------hhhhhcccccccccchHHHHHHHhhhccceeEEEEecc
Confidence             111111 1133444444333      246899999999999888755  458999998887754

>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carbon-carbon bond hydrolase
domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD)
species: Rhodococcus sp., strain rha1 [TaxId: 1831]

Probab=98.96  E-value=9.8e-10  Score=106.43  Aligned_cols=126  Identities=17%  Similarity=0.073  Sum_probs=78.5

Q ss_pred             EEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc-CcCCHHhHHHHcCceEEEEECCCCCCCCchhH
Q 006979          464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGSTGYGREF  542 (623)
Q Consensus       464 i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~-~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~  542 (623)
                      ..+++  ++.+++.+..-+.+          .|.||++||.+..... ..|...+..|++ ||.|+++|.||.|.+...-
T Consensus         7 ~~~~~--~~~~~h~~~~G~~~----------~p~ivllHG~~~~~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~~   73 (281)
T d1c4xa_           7 KRFPS--GTLASHALVAGDPQ----------SPAVVLLHGAGPGAHAASNWRPIIPDLAE-NFFVVAPDLIGFGQSEYPE   73 (281)
T ss_dssp             EEECC--TTSCEEEEEESCTT----------SCEEEEECCCSTTCCHHHHHGGGHHHHHT-TSEEEEECCTTSTTSCCCS
T ss_pred             EEEcc--CCEEEEEEEEecCC----------CCEEEEECCCCCCCcHHHHHHHHHHHHhC-CCEEEEEeCCCCccccccc
Confidence            44444  45677766654432          3789999997543332 234555666754 8999999999966543210


Q ss_pred             HHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       543 ~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                         ..........++....+..++++  ...+++.++|||+||.+++.++ .+|++++++|...+.
T Consensus        74 ---~~~~~~~~~~~~~~~~i~~~i~~--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~  134 (281)
T d1c4xa_          74 ---TYPGHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSV  134 (281)
T ss_dssp             ---SCCSSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred             ---cccccchhhHHHhhhhccccccc--cccccceeccccccccccccccccccccccceEEeccc
Confidence               00011111222333222222222  1236899999999999999998 899999999988775

>d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Proline iminopeptidase-like
domain: Proline iminopeptidase
species: Xanthomonas campestris, pv. citri [TaxId: 339]

Probab=98.94  E-value=4.1e-09  Score=104.07  Aligned_cols=126  Identities=14%  Similarity=0.038  Sum_probs=83.9

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~  541 (623)
                      ++-.+... ||.+|+...+-+.+          -|.||++||+|.+...  +. ....+.+.||.|+++|.||.|.+...
T Consensus        12 ~~~~i~~~-dg~~i~y~~~G~~~----------g~pvvllHG~~g~~~~--~~-~~~~~l~~~~~Vi~~D~rG~G~S~~~   77 (313)
T d1azwa_          12 QQGSLKVD-DRHTLYFEQCGNPH----------GKPVVMLHGGPGGGCN--DK-MRRFHDPAKYRIVLFDQRGSGRSTPH   77 (313)
T ss_dssp             EEEEEECS-SSCEEEEEEEECTT----------SEEEEEECSTTTTCCC--GG-GGGGSCTTTEEEEEECCTTSTTSBST
T ss_pred             CCCEEEeC-CCcEEEEEEecCCC----------CCEEEEECCCCCCccc--hH-HHhHHhhcCCEEEEEeccccCCCCcc
Confidence            55566666 88888866553221          2457789999754432  22 22334568999999999996554321


Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                            ........+|..+.+..++++  ...+++.|+|||+||.+++.++ .+|++++..|...+...
T Consensus        78 ------~~~~~~~~~~~~~dl~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~  138 (313)
T d1azwa_          78 ------ADLVDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFLL  138 (313)
T ss_dssp             ------TCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCC
T ss_pred             ------ccccchhHHHHHHHHHHHHHh--hccccceeEEecCCcHHHHHHHHHhhhceeeeeEeccccc
Confidence                  111222355555555555554  2347899999999999999999 89999999998877543

>d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloalkane dehalogenase
domain: Haloalkane dehalogenase
species: Rhodococcus sp. [TaxId: 1831]

Probab=98.92  E-value=3.8e-09  Score=102.34  Aligned_cols=115  Identities=11%  Similarity=-0.004  Sum_probs=80.7

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|.+|+...+-+++          .|.||++||.+...  ..|...+..|+ .||.|+++|+||.|.....     .   
T Consensus        15 ~g~~i~y~~~G~~~----------~p~lvllHG~~~~~--~~~~~~~~~L~-~~~~vi~~d~~G~G~S~~~-----~---   73 (291)
T d1bn7a_          15 LGERMHYVDVGPRD----------GTPVLFLHGNPTSS--YLWRNIIPHVA-PSHRCIAPDLIGMGKSDKP-----D---   73 (291)
T ss_dssp             TTEEEEEEEESCSS----------SSCEEEECCTTCCG--GGGTTTHHHHT-TTSCEEEECCTTSTTSCCC-----S---
T ss_pred             CCEEEEEEEeCCCC----------CCeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEEeCCCCcccccc-----c---
Confidence            68889876665432          24588899986543  35666677775 5999999999997654321     1   


Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .....++..+.+..++++  ++.+++.++|||+||.+++.++ .+|+.+++.+...+..
T Consensus        74 ~~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~  130 (291)
T d1bn7a_          74 LDYFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIR  130 (291)
T ss_dssp             CCCCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECC
T ss_pred             cccchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeecccc
Confidence            122345555555555443  2346899999999999999888 8999999998876543

>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase/lipase
domain: Carboxylesterase Est
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.90  E-value=2e-09  Score=100.28  Aligned_cols=99  Identities=16%  Similarity=0.096  Sum_probs=69.2

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      +.||++||.+.  ....|...++.|+++||.|+++|+||.|......    ..........|+..++.++...+   .++
T Consensus        12 ~~vvliHG~~~--~~~~~~~l~~~L~~~G~~v~~~D~~G~G~s~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~   82 (242)
T d1tqha_          12 RAVLLLHGFTG--NSADVRMLGRFLESKGYTCHAPIYKGHGVPPEEL----VHTGPDDWWQDVMNGYEFLKNKG---YEK   82 (242)
T ss_dssp             CEEEEECCTTC--CTHHHHHHHHHHHHTTCEEEECCCTTSSSCHHHH----TTCCHHHHHHHHHHHHHHHHHHT---CCC
T ss_pred             CeEEEECCCCC--CHHHHHHHHHHHHHCCCEEEEEeCCCCccccccc----cccchhHHHHHHHHHHhhhhhcc---cCc
Confidence            56788999853  3346778899999999999999999966543321    11122223455556666655443   479


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEe
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGAS  603 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~  603 (623)
                      +.++|||+||.+++.++ .+|......++
T Consensus        83 ~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~  111 (242)
T d1tqha_          83 IAVAGLSLGGVFSLKLGYTVPIEGIVTMC  111 (242)
T ss_dssp             EEEEEETHHHHHHHHHHTTSCCSCEEEES
T ss_pred             eEEEEcchHHHHhhhhcccCccccccccc
Confidence            99999999999999999 77766554443

>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Hypothetical protein VC1974
domain: Hypothetical protein VC1974
species: Vibrio cholerae [TaxId: 666]

Probab=98.90  E-value=2.1e-09  Score=101.71  Aligned_cols=101  Identities=14%  Similarity=0.052  Sum_probs=66.7

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD  572 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d  572 (623)
                      ...|+||++||.+.  ....|...+..|++.||.|+++|+||.|.......      ..   ..+...+...+.......
T Consensus        14 ~~~P~ivllHG~~~--~~~~~~~~~~~L~~~g~~vi~~Dl~G~G~s~~~~~------~~---~~~~~~~~~~~~~~~~~~   82 (264)
T d1r3da_          14 ARTPLVVLVHGLLG--SGADWQPVLSHLARTQCAALTLDLPGHGTNPERHC------DN---FAEAVEMIEQTVQAHVTS   82 (264)
T ss_dssp             TTBCEEEEECCTTC--CGGGGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCT
T ss_pred             CCCCeEEEeCCCCC--CHHHHHHHHHHHHhCCCEEEEEecccccccccccc------cc---cchhhhhhhhcccccccc
Confidence            34578999999854  34467788899999999999999999665433211      11   111122222222222344


Q ss_pred             CCceEEEEcChHHHHHHHHh-cCCCceeEEEec
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AFRDTFKAGASL  604 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~  604 (623)
                      .+++.++|||+||.+++.++ .+|+.+...+..
T Consensus        83 ~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~  115 (264)
T d1r3da_          83 EVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGA  115 (264)
T ss_dssp             TSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEE
T ss_pred             cCceeeeeecchHHHHHHHHHhCchhccccccc
Confidence            57999999999999999888 788766665544

>d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Arylesterase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.89  E-value=7.4e-09  Score=98.77  Aligned_cols=118  Identities=19%  Similarity=0.212  Sum_probs=80.1

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHh
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER  545 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~  545 (623)
                      |.+. ||.+|+...+           +.. |.||++||.+.  ....|...++.|+++||.|+++|+||.|.....    
T Consensus         3 f~~~-dG~~l~y~~~-----------G~g-~~vv~lHG~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~----   63 (271)
T d1va4a_           3 FVAK-DGTQIYFKDW-----------GSG-KPVLFSHGWLL--DADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP----   63 (271)
T ss_dssp             EECT-TSCEEEEEEE-----------SSS-SEEEEECCTTC--CGGGGHHHHHHHHTTTCEEEEECCTTSTTSCCC----
T ss_pred             EEeE-CCeEEEEEEE-----------cCC-CeEEEECCCCC--CHHHHHHHHHHHHhCCCEEEEEecccccccccc----
Confidence            4555 8988874333           222 45778999854  334577788899999999999999996654221    


Q ss_pred             hccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHH-h-cCCCceeEEEecccCC
Q 006979          546 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA-L-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       546 ~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~-~-~~~~~f~a~v~~~g~~  608 (623)
                          ......++....+..+.++  ++.+++.++|||+||.+++.. + .+|++++..+...+..
T Consensus        64 ----~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~  122 (271)
T d1va4a_          64 ----WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVT  122 (271)
T ss_dssp             ----SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred             ----ccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccc
Confidence                1122345555444444443  235789999999998776654 4 6799999999887654

>d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Gamma-lactamase
species: Aureobacterium sp. [TaxId: 51671]

Probab=98.87  E-value=6.1e-09  Score=100.14  Aligned_cols=101  Identities=14%  Similarity=0.090  Sum_probs=68.2

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+..  ...|...+..+.++||.|+++|+||.|.+...     ...   ...++....+..+++.  ++.++
T Consensus        24 ~~illlHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~-----~~~---~~~~~~~~di~~~i~~--l~~~~   91 (279)
T d1hkha_          24 QPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRGFGGSSKV-----NTG---YDYDTFAADLHTVLET--LDLRD   91 (279)
T ss_dssp             EEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTSTTSCCC-----SSC---CSHHHHHHHHHHHHHH--HTCCS
T ss_pred             CeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEechhhCCcccc-----ccc---cchhhhhhhhhhhhhh--cCcCc
Confidence            568889998543  34566778888899999999999997654321     111   2334433333333332  23468


Q ss_pred             eEEEEcChHH-HHHHHHh-cCCCceeEEEecccCC
Q 006979          576 LCITGGSAGG-YTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       576 v~i~G~S~GG-~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +.++|||+|| .+++.++ .+|++++++|...++.
T Consensus        92 ~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~  126 (279)
T d1hkha_          92 VVLVGFSMGTGELARYVARYGHERVAKLAFLASLE  126 (279)
T ss_dssp             EEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred             cccccccccccchhhhhccccccccceeEEeeccC
Confidence            9999999996 5555566 6799999999877643

>d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Bromoperoxidase A2
species: Streptomyces aureofaciens [TaxId: 1894]

Probab=98.87  E-value=7.7e-09  Score=99.21  Aligned_cols=101  Identities=14%  Similarity=0.029  Sum_probs=68.0

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+..  ...|...+..|+++||.|+++|+||.|.+...     ..   ....++..+.+..++++  ++.++
T Consensus        24 ~~ivllHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~-----~~---~~~~~~~~~dl~~~l~~--l~~~~   91 (277)
T d1brta_          24 QPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGFGQSSQP-----TT---GYDYDTFAADLNTVLET--LDLQD   91 (277)
T ss_dssp             SEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-----SS---CCSHHHHHHHHHHHHHH--HTCCS
T ss_pred             CeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeCCCCCccccc-----cc---ccchhhhhhhhhhhhhc--cCccc
Confidence            568889998543  34566778889999999999999996654321     11   12233333333333332  12468


Q ss_pred             eEEEEcChHHHH-HHHHh-cCCCceeEEEecccCC
Q 006979          576 LCITGGSAGGYT-TLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       576 v~i~G~S~GG~~-~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +.++|||+||.+ +..++ .+|++++++|...++.
T Consensus        92 ~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~  126 (277)
T d1brta_          92 AVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLE  126 (277)
T ss_dssp             EEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred             ccccccccchhhhhHHHHHhhhcccceEEEecCCC
Confidence            999999999754 55555 6799999999887654

>d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Hydroxynitrile lyase-like
domain: Salicylic acid-binding protein 2 (SABP2)
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.86  E-value=5.3e-09  Score=98.40  Aligned_cols=102  Identities=17%  Similarity=0.113  Sum_probs=74.0

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.+.+  ...|...+..|+++||.|+++|+||.|.+....    .   .....++....+..+.++-.. ..+
T Consensus         3 ~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~Dl~G~G~S~~~~----~---~~~~~~~~~~~~~~~~~~~~~-~~~   72 (258)
T d1xkla_           3 KHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAASGTDLRKI----E---ELRTLYDYTLPLMELMESLSA-DEK   72 (258)
T ss_dssp             CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTTSTTCCCCG----G---GCCSHHHHHHHHHHHHHTSCS-SSC
T ss_pred             CcEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC----C---CCcchHHHHHHHhhhhhcccc-ccc
Confidence            468889998543  346778899999999999999999976653321    1   112344444444444444223 368


Q ss_pred             eEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          576 LCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      +.++|||+||.+++.++ .+|++++..|...+.
T Consensus        73 ~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~  105 (258)
T d1xkla_          73 VILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAF  105 (258)
T ss_dssp             EEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred             ccccccchhHHHHHHHhhhhccccceEEEeccc
Confidence            89999999999999988 899999999988764

>d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloperoxidase
domain: Chloroperoxidase F
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.85  E-value=1.2e-08  Score=97.58  Aligned_cols=119  Identities=16%  Similarity=0.173  Sum_probs=78.7

Q ss_pred             EeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHH
Q 006979          465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE  544 (623)
Q Consensus       465 ~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~  544 (623)
                      +|.+. ||.+++...+           ++. |.||++||.+.  ....|...+..|.++||.|+++|+||.|.....   
T Consensus         2 ~f~~~-dG~~i~y~~~-----------G~g-~pvvllHG~~~--~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~---   63 (273)
T d1a8sa_           2 TFTTR-DGTQIYYKDW-----------GSG-QPIVFSHGWPL--NADSWESQMIFLAAQGYRVIAHDRRGHGRSSQP---   63 (273)
T ss_dssp             EEECT-TSCEEEEEEE-----------SCS-SEEEEECCTTC--CGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC---
T ss_pred             EEEee-CCcEEEEEEE-----------CCC-CeEEEECCCCC--CHHHHHHHHHHHHhCCCEEEEEechhcCccccc---
Confidence            46677 8988875433           222 34678999854  334577788899999999999999997654321   


Q ss_pred             hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHH-h-cCCCceeEEEecccCC
Q 006979          545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA-L-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       545 ~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~-~-~~~~~f~a~v~~~g~~  608 (623)
                        .   .....++..+.+..++++  .+.++..++|+|+||.+++.+ + .+|+++++++...+..
T Consensus        64 --~---~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~  122 (273)
T d1a8sa_          64 --W---SGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVP  122 (273)
T ss_dssp             --S---SCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred             --c---ccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEeccc
Confidence              1   112344444444443333  234678899999988766554 4 5699999888776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.85  E-value=1.8e-07  Score=92.55  Aligned_cols=244  Identities=13%  Similarity=0.093  Sum_probs=134.4

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .|||++...++|++++++++ .....+...    .......+++|||+.+++...+..     ....++.++..++.   
T Consensus        52 ~Ly~~D~~~g~I~ri~p~g~-~~~~~~~~~----~~~p~gla~~~dG~l~va~~~~~~-----~~~~i~~~~~~~~~---  118 (319)
T d2dg1a1          52 QLFLLDVFEGNIFKINPETK-EIKRPFVSH----KANPAAIKIHKDGRLFVCYLGDFK-----STGGIFAATENGDN---  118 (319)
T ss_dssp             CEEEEETTTCEEEEECTTTC-CEEEEEECS----SSSEEEEEECTTSCEEEEECTTSS-----SCCEEEEECTTSCS---
T ss_pred             CEEEEECCCCEEEEEECCCC-eEEEEEeCC----CCCeeEEEECCCCCEEEEecCCCc-----cceeEEEEcCCCce---
Confidence            68999888889999999865 112233322    223456789999985554322221     12668888888776   


Q ss_pred             ceecccCC---CcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          236 PKVLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       236 ~~~l~~~~---~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                      ...+....   ...+...+.|||+ |++....... ......++.++.+++.   ...+..+.     .....+.|++||
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~-~~~~g~v~~~~~dg~~---~~~~~~~~-----~~pnGia~s~dg  188 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYS-TNPLGGVYYVSPDFRT---VTPIIQNI-----SVANGIALSTDE  188 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBT-TBCCEEEEEECTTSCC---EEEEEEEE-----SSEEEEEECTTS
T ss_pred             eeeeccCCCcccCCcceeEEeccc-eeeccccccc-ccCcceeEEEecccce---eEEEeecc-----ceeeeeeecccc
Confidence            44443321   2234467999997 7666543221 1234568888776542   22233221     234578999999


Q ss_pred             cEEEEEeCCCCeeeEEEEecCCC--eEEEEee-cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCC
Q 006979          313 ELFFVTDRKNGFWNLHKWIESNN--EVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF  389 (623)
Q Consensus       313 ~l~~~~~~~~g~~~L~~~d~~~~--~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~  389 (623)
                      +.+|+++.  ...+|++++.+..  ....... ........   .+.+.+.+-    .++.||++..  +...|.++|.+
T Consensus       189 ~~lyvad~--~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~---~~PdGl~vD----~~G~l~Va~~--~~g~V~~~~p~  257 (319)
T d2dg1a1         189 KVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGH---EGPDSCCID----SDDNLYVAMY--GQGRVLVFNKR  257 (319)
T ss_dssp             SEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSS---SEEEEEEEB----TTCCEEEEEE--TTTEEEEECTT
T ss_pred             ceEEEecc--cCCceEEEEEcCCCceeccccceeeeccCCc---cceeeeeEc----CCCCEEEEEc--CCCEEEEECCC
Confidence            95556665  4457888876432  2221111 00000100   011234443    3344666653  33468899998


Q ss_pred             CCceeecccCCc------ceEee--eecCCEEEEEEecC--CCCCeEEEEEcCC
Q 006979          390 GHSLSLLDIPFT------DIDNI--TLGNDCLFVEGASG--VEPSSVAKVTLDD  433 (623)
Q Consensus       390 ~~~~~~lt~~~~------~v~~~--~~~~~~~~~~~~s~--~~~~~ly~~~l~~  433 (623)
                      +..+..+..|..      ....+  .++.+.++.+..+.  .....||+++...
T Consensus       258 G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~~  311 (319)
T d2dg1a1         258 GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA  311 (319)
T ss_dssp             SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred             CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCCC
Confidence            777777765531      11122  34555666655432  3345688887654

>d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Hydroxynitrile lyase-like
domain: Hydroxynitrile lyase
species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]

Probab=98.84  E-value=1.6e-09  Score=102.27  Aligned_cols=99  Identities=14%  Similarity=0.090  Sum_probs=72.4

Q ss_pred             EEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHH-HhCCCCCCCce
Q 006979          498 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFL-VGSGKADEKRL  576 (623)
Q Consensus       498 iv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l-~~~~~~d~~rv  576 (623)
                      .|++||.+.+  ...|...+..|+++||.|+++|+||.|......    .   .....++..+.+..+ .+.+  ..+++
T Consensus         5 ~vliHG~~~~--~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~----~---~~~~~~~~~~~l~~~~~~~~--~~~~~   73 (256)
T d3c70a1           5 FVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAASGVDPRQI----E---EIGSFDEYSEPLLTFLEALP--PGEKV   73 (256)
T ss_dssp             EEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG----G---GCCSHHHHTHHHHHHHHHSC--TTCCE
T ss_pred             EEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCCC----C---CCCCHHHHHHHhhhhhhhhc--cccce
Confidence            4789998543  446777899999999999999999976654321    1   112345555444443 3332  24799


Q ss_pred             EEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          577 CITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       577 ~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      .++|||+||++++.++ .+|++++++|...+.
T Consensus        74 ~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~  105 (256)
T d3c70a1          74 ILVGESCGGLNIAIAADKYCEKIAAAVFHNSV  105 (256)
T ss_dssp             EEEEETTHHHHHHHHHHHHGGGEEEEEEESCC
T ss_pred             eecccchHHHHHHHHhhcCchhhhhhheeccc
Confidence            9999999999999998 889999999988764

>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Mammalian carboxylesterase (liver carboxylesterase I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=5.9e-10  Score=119.34  Aligned_cols=128  Identities=20%  Similarity=0.261  Sum_probs=89.6

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCC-CCCchhHHHhhccCCcc
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLLGRWGI  552 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs-~~~g~~~~~~~~~~~g~  552 (623)
                      .|+.-+|.|++..    .+++.|++|++|||................++++.+|+.+|||=+ -|+-..-.....+++  
T Consensus        96 CL~LnI~~P~~~~----~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~~gN~--  169 (532)
T d2h7ca1          96 CLYLNIYTPADLT----KKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHSRGNW--  169 (532)
T ss_dssp             CCEEEEEECSCTT----SCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCCCCH--
T ss_pred             CCEEEEEECCCCC----CCCCcEEEEEEeCCcccccccccCCchhhhhcCceEEEEEeeccCCCcccccccccccccc--
Confidence            4777788887532    256789999999996543333222233456789999999999931 111100001123344  


Q ss_pred             chHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-c--CCCceeEEEecccCC
Q 006979          553 VDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-A--FRDTFKAGASLYGVS  608 (623)
Q Consensus       553 ~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~--~~~~f~a~v~~~g~~  608 (623)
                       -..|++.|++|+.++-   --||+||-|+|+|+||..+..++ .  ...+|+.+|+.+|..
T Consensus       170 -Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~  230 (532)
T d2h7ca1         170 -GHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA  230 (532)
T ss_dssp             -HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred             -ccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence             4889999999998841   26999999999999999998877 2  356999999999864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.84  E-value=3.8e-06  Score=82.21  Aligned_cols=211  Identities=9%  Similarity=-0.023  Sum_probs=120.4

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCc--eecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP--LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI  223 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~--~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L  223 (623)
                      +.+..++++ ..+++...++.|.++|+.++ ...  ..+...    ........|+|+|++++....+..       ..+
T Consensus        61 v~~~~~sp~g~~latg~~dg~i~iwd~~~~-~~~~~~~~~~~----~~~v~~v~~s~d~~~l~~~~~~~~-------~~~  128 (311)
T d1nr0a1          61 TTVAKTSPSGYYCASGDVHGNVRIWDTTQT-THILKTTIPVF----SGPVKDISWDSESKRIAAVGEGRE-------RFG  128 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEESSST-TCCEEEEEECS----SSCEEEEEECTTSCEEEEEECCSS-------CSE
T ss_pred             EEEEEEeCCCCeEeccccCceEeeeeeecc-ccccccccccc----cCcccccccccccccccccccccc-------ccc
Confidence            556667766 56667777888999999865 222  122221    234567889999999888765432       225


Q ss_pred             EEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       224 ~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      .+.++++++.  ...+....+.+....|+|||++++....++       ..|.++|+.++.   ......+..    ..+
T Consensus       129 ~v~~~~~~~~--~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d-------~~i~i~d~~~~~---~~~~~~~~~----~~i  192 (311)
T d1nr0a1         129 HVFLFDTGTS--NGNLTGQARAMNSVDFKPSRPFRIISGSDD-------NTVAIFEGPPFK---FKSTFGEHT----KFV  192 (311)
T ss_dssp             EEEETTTCCB--CBCCCCCSSCEEEEEECSSSSCEEEEEETT-------SCEEEEETTTBE---EEEEECCCS----SCE
T ss_pred             cccccccccc--cccccccccccccccccccceeeecccccc-------cccccccccccc---ccccccccc----ccc
Confidence            5667777652  334444445556678999999755444332       237888887652   333344433    456


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc-c-ccccccccccCcceeEEeecCCCCEEEEEEEECCeE
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-A-EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-~-~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~  381 (623)
                      ....|+|||++++.... ++.  +..+|..+++........ . ..+...+   ...+.|.   |+++.|+ +...+|. 
T Consensus       193 ~~v~~~p~~~~l~~~~~-d~~--v~~~d~~~~~~~~~~~~~~~~~~~h~~~---V~~~~~s---~~~~~l~-tgs~Dg~-  261 (311)
T d1nr0a1         193 HSVRYNPDGSLFASTGG-DGT--IVLYNGVDGTKTGVFEDDSLKNVAHSGS---VFGLTWS---PDGTKIA-SASADKT-  261 (311)
T ss_dssp             EEEEECTTSSEEEEEET-TSC--EEEEETTTCCEEEECBCTTSSSCSSSSC---EEEEEEC---TTSSEEE-EEETTSE-
T ss_pred             cccccCccccccccccc-ccc--cccccccccccccccccccccccccccc---ccccccC---CCCCEEE-EEeCCCe-
Confidence            78899999995555543 344  555666665533332211 0 0011111   1223333   3666555 4445665 


Q ss_pred             EEEEEeCCCCcee-ecc
Q 006979          382 YLGILDDFGHSLS-LLD  397 (623)
Q Consensus       382 ~L~~~d~~~~~~~-~lt  397 (623)
                       |+++|..+++.. .+.
T Consensus       262 -v~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         262 -IKIWNVATLKVEKTIP  277 (311)
T ss_dssp             -EEEEETTTTEEEEEEE
T ss_pred             -EEEEECCCCcEEEEEE
Confidence             555687777653 444

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.83  E-value=6.2e-07  Score=87.71  Aligned_cols=153  Identities=12%  Similarity=0.047  Sum_probs=89.0

Q ss_pred             EEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce
Q 006979          158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK  237 (623)
Q Consensus       158 ~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~  237 (623)
                      +++...+++|+++|++++ .....+...  ........+++||||++++.+....        ..|+++|+.+++.  ..
T Consensus         4 ~vt~~~d~~v~v~D~~s~-~~~~~i~~~--~~~~~~~~i~~spDg~~l~v~~~~~--------~~v~v~D~~t~~~--~~   70 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKM-AVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKS--------ESLVKIDLVTGET--LG   70 (337)
T ss_dssp             EEEEETTTEEEEEETTTT-EEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTT--------TEEEEEETTTCCE--EE
T ss_pred             EEEEcCCCEEEEEECCCC-eEEEEEECC--CCCCCccEEEECCCCCEEEEEECCC--------CeEEEEECCCCcE--EE
Confidence            344456788999999876 223334322  1122345788999999876653221        5699999999873  22


Q ss_pred             ecc--cCC---CcccceeeCCCCCEEEEEEecCCCCCC----CceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979          238 VLV--SGS---DFYAFPRMDPRGERMAWIEWHHPNMPW----DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       238 ~l~--~~~---~~~~~p~wSPDG~~la~~~~~~~~~p~----~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      .+.  ...   .......|||||++++....+.....|    ....+.+.|...+.   ....+...     ..+....|
T Consensus        71 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~~-----~~~~~~~~  142 (337)
T d1pbyb_          71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS---RRKAFEAP-----RQITMLAW  142 (337)
T ss_dssp             EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE---EEEEEECC-----SSCCCEEE
T ss_pred             EEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe---EEEecccc-----CCceEEEE
Confidence            222  111   123457899999999877643322111    23456777777662   23333322     34567899


Q ss_pred             CCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979          309 SSKGELFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       309 s~DG~l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                      ++||+.+++...     .+..+|..+++
T Consensus       143 s~dg~~l~~~~~-----~~~~~d~~~~~  165 (337)
T d1pbyb_         143 ARDGSKLYGLGR-----DLHVMDPEAGT  165 (337)
T ss_dssp             CTTSSCEEEESS-----SEEEEETTTTE
T ss_pred             cCCCCEEEEEcC-----CcceeeeecCc
Confidence            999994444433     13344555544

>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Thermophilic para-nitrobenzyl esterase (PNB esterase)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.83  E-value=7.1e-10  Score=117.18  Aligned_cols=127  Identities=22%  Similarity=0.304  Sum_probs=88.5

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-CCH-HhHHHHcCceEEEEECCCCC-CCCc--hhHHHhhc
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNL-SIQYWTSRGWAFVDVNYGGS-TGYG--REFRERLL  547 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-~~~-~~~~~a~~G~~v~~~d~rGs-~~~g--~~~~~~~~  547 (623)
                      -.|+.-+|.|+..      ++++|++|++|||........ ... .....++.+++|+.+|||=+ -|+-  .+..+...
T Consensus        80 DCL~lni~~P~~~------~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~~GFl~~~~~~~~~~  153 (483)
T d1qe3a_          80 DCLYVNVFAPDTP------SQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYS  153 (483)
T ss_dssp             CCCEEEEEEECSS------CCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTCTTSC
T ss_pred             cCCEEEEEECCCC------CCCCceEEEEeecccccCCccccccccccccccCceEEEeecccccchhhccccccccccc
Confidence            3578888889762      678999999999954332222 122 22334456799999999931 1111  11111223


Q ss_pred             cCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCC
Q 006979          548 GRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVS  608 (623)
Q Consensus       548 ~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~  608 (623)
                      +++   -+.|++.|++|+.+.-   --||+||-|+|+|+||..+..++..   ..+|+.+|+.+|..
T Consensus       154 gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~  217 (483)
T d1qe3a_         154 DNL---GLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS  217 (483)
T ss_dssp             SCH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred             ccc---ccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence            344   4889999999998852   2599999999999999999988833   46999999999864

>d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carbon-carbon bond hydrolase
domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD)
species: Burkholderia xenovorans [TaxId: 36873]

Probab=98.83  E-value=1.9e-09  Score=104.31  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=68.0

Q ss_pred             CEEEEecCCCCCcccC-cCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          496 PLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~-~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      |.||++||.+.+.... .+......+.++||.|+++|+||.|......   ..........+|+.+.++.+      +.+
T Consensus        31 ~~ivllHG~~~~~~~~~~~~~~l~~~~~~g~~v~~~D~~G~G~S~~~~---~~~~~~~~~~~~i~~li~~l------~~~  101 (283)
T d2rhwa1          31 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVV---MDEQRGLVNARAVKGLMDAL------DID  101 (283)
T ss_dssp             SEEEEECCCSTTCCHHHHHTTTHHHHHHTTCEEEEECCTTSTTSCCCC---CSSCHHHHHHHHHHHHHHHH------TCC
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHHHHCCCEEEEEeCCCCccccccc---ccccccchhhhhcccccccc------ccc
Confidence            6788899985443321 1112234567899999999999966543211   00011111234555555544      246


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ++.++|||+||.+++.++ .+|+.++++|...|.
T Consensus       102 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~  135 (283)
T d2rhwa1         102 RAHLVGNAMGGATALNFALEYPDRIGKLILMGPG  135 (283)
T ss_dssp             CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCS
T ss_pred             ccccccccchHHHHHHHHHHhhhhcceEEEeCCC
Confidence            899999999999999988 899999999988764

>d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carbon-carbon bond hydrolase
domain: Meta-cleavage product hydrolase CumD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.82  E-value=1.6e-08  Score=96.67  Aligned_cols=116  Identities=12%  Similarity=0.069  Sum_probs=78.8

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc-CcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR  549 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~-~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~  549 (623)
                      +|..++..-+           ++. |.||++||.+..... ..|......| ++||.|+++|+||.|.....       .
T Consensus        11 ~G~~~~Y~~~-----------G~G-~pvvllHG~~~~~~~~~~~~~~~~~l-~~~~~vi~~Dl~G~G~S~~~-------~   70 (271)
T d1uk8a_          11 AGVLTNYHDV-----------GEG-QPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGFGFTDRP-------E   70 (271)
T ss_dssp             TTEEEEEEEE-----------CCS-SEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCC-------T
T ss_pred             CCEEEEEEEE-----------eeC-CeEEEECCCCCCccHHHHHHHHHHHH-hCCCEEEEEeCCCCCCcccc-------c
Confidence            6888874433           222 456788998543322 2234445555 46999999999997654321       1


Q ss_pred             CccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       550 ~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      ......++....+..+.++  .+.+++.++|||+||.+++.++ .+|+.++++|...+..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~  128 (271)
T d1uk8a_          71 NYNYSKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAG  128 (271)
T ss_dssp             TCCCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred             cccccccccchhhhhhhhh--hcCCCceEeeccccceeehHHHHhhhccchheeecccCC
Confidence            1123456666666666655  2347999999999999999988 8999999999876653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.80  E-value=4.1e-06  Score=83.48  Aligned_cols=300  Identities=9%  Similarity=-0.057  Sum_probs=144.6

Q ss_pred             CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeC------
Q 006979           92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNY------  162 (623)
Q Consensus        92 ~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~------  162 (623)
                      ..+.++| +.++|... .....+...+|.++..++ +....++...          ....++++|  .+++...      
T Consensus        24 ~~~a~spdg~~~~~~~-~~~~~~~~~v~v~D~~tg-~~~~~~~~~~----------~~~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          24 NDEAPGADGRRSYINL-PAHHSAIIQQWVLDAGSG-SILGHVNGGF----------LPNPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             cccccCCCCCEEEEEc-ccccCCCceEEEEECCCC-CEEEEEeCCC----------CccEEEcCCCCEEEEEeecCCccc
Confidence            3456788 77776543 333345556777776544 3332233221          112344444  5555542      


Q ss_pred             ---CCCcEEEEeCCCCCCCce-ecCCCCCCCC---eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          163 ---KDQRLYKHSIDSKDSSPL-PITPDYGEPL---VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       163 ---~~~~l~~~d~~~g~~~~~-~Lt~~~~~~~---~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                         .++.|.++|+.++  +.. .+........   .......|+|||+.+++...+..       +.+.+++..+++   
T Consensus        92 ~~~~~~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~-------~~~~~~~~~~~~---  159 (373)
T d2madh_          92 KGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG-------PAVGLVVQGGSS---  159 (373)
T ss_pred             ccccceEEEEEECCCC--cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC-------CceEEeeccCCe---
Confidence               2356899999877  332 2222100000   01134679999998877665432       345666666554   


Q ss_pred             ceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979          236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (623)
Q Consensus       236 ~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~  315 (623)
                      ......   ......++|||+.+++....       ...+.+++...+............. ..........+++++.++
T Consensus       160 ~~~~~~---~~~~~~~s~~g~~~~v~~~~-------dg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  228 (373)
T d2madh_         160 DDQLLS---SPTCYHIHPGAPSTFYLLCA-------QGGLAKTDHAGGAAGAGLVGAMLTA-AQNLLTQPAQANKSGRIV  228 (373)
T ss_pred             EEEEec---cceeEEEecCCCcEEEEEcC-------CCeEEEEEcCCceeeEEEeeecccc-CccceeeeEEECCCceEE
Confidence            221111   12345799999987655432       2347777777653211111000000 000122334556665544


Q ss_pred             EEEeCCCCeeeEEEEecCCCeEEEEeeccc---ccccccccccCc-ceeEEeecCCCCEEEEEEEE-------CCeEEEE
Q 006979          316 FVTDRKNGFWNLHKWIESNNEVLAIYSLDA---EFSRPLWVFGIN-SYEIIQSHGEKNLIACSYRQ-------NGRSYLG  384 (623)
Q Consensus       316 ~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~---~~~~~~w~~~~~-~~~~l~~s~~~~~l~~~~~~-------~g~~~L~  384 (623)
                      +....  +  .++.++..+++...+.....   ......|.++.. ...+   ++++..+++....       .....+.
T Consensus       229 ~~~~~--~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~v~  301 (373)
T d2madh_         229 WPVYS--G--KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY---LKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             EecCC--c--eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEE---ecCCCeEEEecCCCceEEeecCCCeEE
Confidence            44332  2  34445554444333321111   111112222111 1122   2255555544332       2234678


Q ss_pred             EEeCCCCce-eecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          385 ILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       385 ~~d~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ++|..+++. ..+..+. ....+  ++|++++++......  ..|+++|+.+++.
T Consensus       302 ~~d~~t~~~~~~~~~~~-~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~~  353 (373)
T d2madh_         302 SVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQ  353 (373)
T ss_pred             EEECCCCcEEEEecCCC-CeeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCE
Confidence            888877764 4444433 23333  788888766544322  4689999998874

>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Triacylglycerol lipase
species: Yeast (Candida antarctica), form b [TaxId: 34362]

Probab=98.79  E-value=1.1e-08  Score=100.38  Aligned_cols=103  Identities=15%  Similarity=0.052  Sum_probs=75.4

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~  571 (623)
                      +.++| ||++||.........+....++|+++||.|+.+|++|.+...   .        ....+++.+.++++.+.-  
T Consensus        29 ~~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g~g~~d---~--------~~sae~la~~i~~v~~~~--   94 (317)
T d1tcaa_          29 SVSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLND---T--------QVNTEYMVNAITALYAGS--   94 (317)
T ss_dssp             SCSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTTTCSC---H--------HHHHHHHHHHHHHHHHHT--
T ss_pred             CCCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCCCCCCc---h--------HhHHHHHHHHHHHHHHhc--
Confidence            44567 566899754443334567889999999999999999743211   1        123567888888887752  


Q ss_pred             CCCceEEEEcChHHHHHHHHh-cCC---CceeEEEecccCC
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-AFR---DTFKAGASLYGVS  608 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~~~---~~f~a~v~~~g~~  608 (623)
                      ..+||.|+|||+||.++.+++ .+|   ++++..|.+.+..
T Consensus        95 g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~  135 (317)
T d1tcaa_          95 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDY  135 (317)
T ss_dssp             TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCT
T ss_pred             cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCC
Confidence            247999999999999999988 565   5688888888764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.78  E-value=4e-07  Score=91.50  Aligned_cols=248  Identities=5%  Similarity=-0.146  Sum_probs=128.6

Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCC-CCCCceeEEEEEEcCCCCcccceecccCC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~-~~~~~~~~L~~idl~~g~~~~~~~l~~~~  243 (623)
                      .+||++|.+++  +.......     .....+.|||||+.|++....... ........|.++|+.+++......+....
T Consensus        46 ~~~~~~d~~~~--~~~~~~~~-----~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~  118 (368)
T d1mdah_          46 TENWVSCAGCG--VTLGHSLG-----AFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP  118 (368)
T ss_dssp             EEEEEEETTTT--EEEEEEEE-----CTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred             ceEEEEeCCCC--cEEEEEeC-----CCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc
Confidence            35999999877  44333332     122347899999999887543211 11123467999999988621111111111


Q ss_pred             C-----cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCC-CC--ccccCcCceeCCCCc-E
Q 006979          244 D-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-PT--IVESPTEPKWSSKGE-L  314 (623)
Q Consensus       244 ~-----~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~ws~DG~-l  314 (623)
                      .     ......||||||+|++...+.       ..++++|+.++..   ...+.... ..  .......+.+++||+ +
T Consensus       119 ~~~~g~~p~~~a~SpDGk~l~va~~~~-------~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~  188 (368)
T d1mdah_         119 RFSVGPRVHIIGNCASSACLLFFLFGS-------SAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLA  188 (368)
T ss_dssp             SCCBSCCTTSEEECTTSSCEEEEECSS-------SCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCE
T ss_pred             eecccCCccceEECCCCCEEEEEeCCC-------CeEEEEECCCCcE---eEEeeccCcceEccCCCceEEEEcCCCCEE
Confidence            1     123467999999998775332       2488888887632   11111110 00  001112345567777 3


Q ss_pred             EEEEeCCCCe---------------------------------eeEEEEecCCCeEEEEeecccc---cccccccccC-c
Q 006979          315 FFVTDRKNGF---------------------------------WNLHKWIESNNEVLAIYSLDAE---FSRPLWVFGI-N  357 (623)
Q Consensus       315 ~~~~~~~~g~---------------------------------~~L~~~d~~~~~~~~l~~~~~~---~~~~~w~~~~-~  357 (623)
                      ++.... .+.                                 ..++.++...++...+......   .....|.++. .
T Consensus       189 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  267 (368)
T d1mdah_         189 ASDLAA-APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             EEECCS-SCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred             EEEecC-CceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCce
Confidence            333221 110                                 1233444444443333211110   0111233221 2


Q ss_pred             ceeEEeecCCCCEEEEEEEECC------eEEEEEEeCCCCcee-ecccCCcceEee--eecCCEEEEEEecCCCCCeEEE
Q 006979          358 SYEIIQSHGEKNLIACSYRQNG------RSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAK  428 (623)
Q Consensus       358 ~~~~l~~s~~~~~l~~~~~~~g------~~~L~~~d~~~~~~~-~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~  428 (623)
                      .+.+.   ++++.+|+....++      ..+|+++|..+++.. .+..+. .+..+  ++|++.++|.....  ...|++
T Consensus       268 ~~a~~---~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~-~~~~~a~spDG~~~ly~s~~~--~~~v~v  341 (368)
T d1mdah_         268 MVAKL---KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAG--TEVLDI  341 (368)
T ss_dssp             CEEEE---TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETT--TTEEEE
T ss_pred             eEEEc---CCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCC-ceeEEEECCCCCEEEEEEeCC--CCeEEE
Confidence            33333   47777777765443      467999999887643 343332 23333  77887665555432  247999


Q ss_pred             EEcCCCcc
Q 006979          429 VTLDDHKL  436 (623)
Q Consensus       429 ~~l~~~~~  436 (623)
                      +|+.+++.
T Consensus       342 ~D~~tgk~  349 (368)
T d1mdah_         342 YDAASDQD  349 (368)
T ss_dssp             EESSSCEE
T ss_pred             EECCCCCE
Confidence            99998874

>d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: YdeN-like
domain: Hypothetical protein YdeN
species: Bacillus subtilis [TaxId: 1423]

Probab=98.78  E-value=7.8e-09  Score=93.69  Aligned_cols=95  Identities=12%  Similarity=0.012  Sum_probs=67.8

Q ss_pred             EEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCce
Q 006979          497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL  576 (623)
Q Consensus       497 liv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv  576 (623)
                      .||++||...+.....+...++.++++||.|+++|++|.+.               ...+|....++.+.+   ...+++
T Consensus         3 ~V~~vHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~p~~~~---------------~~~~~~~~~l~~~~~---~~~~~~   64 (186)
T d1uxoa_           3 QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQH---TLHENT   64 (186)
T ss_dssp             EEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGG---GCCTTE
T ss_pred             EEEEECCCCCCcchhHHHHHHHHHHhCCCEEEEeccCCCCc---------------chHHHHHHHHHHHHh---ccCCCc
Confidence            48999998554443345678899999999999999998542               124455555544443   346899


Q ss_pred             EEEEcChHHHHHHHHh-cCCC--ceeEEEecccCCC
Q 006979          577 CITGGSAGGYTTLAAL-AFRD--TFKAGASLYGVSI  609 (623)
Q Consensus       577 ~i~G~S~GG~~~~~~~-~~~~--~f~a~v~~~g~~d  609 (623)
                      .++|||+||++++.++ .++.  ...+.++.+++..
T Consensus        65 ~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~  100 (186)
T d1uxoa_          65 YLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAK  100 (186)
T ss_dssp             EEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSS
T ss_pred             EEEEechhhHHHHHHHHhCCccceeeEEeecccccc
Confidence            9999999999999988 6654  3455666666544

>d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloalkane dehalogenase
domain: Haloalkane dehalogenase
species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]

Probab=98.78  E-value=2.3e-08  Score=96.37  Aligned_cols=117  Identities=10%  Similarity=-0.000  Sum_probs=77.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW  550 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~  550 (623)
                      +|.+++....           +. .|.||++||.+...  ..|...+..|++ +|.|+++|.||.|.+...-   .....
T Consensus        16 ~g~~i~y~~~-----------G~-g~~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~---~~~~~   77 (298)
T d1mj5a_          16 KGRRMAYIDE-----------GT-GDPILFQHGNPTSS--YLWRNIMPHCAG-LGRLIACDLIGMGDSDKLD---PSGPE   77 (298)
T ss_dssp             TTEEEEEEEE-----------SC-SSEEEEECCTTCCG--GGGTTTGGGGTT-SSEEEEECCTTSTTSCCCS---SCSTT
T ss_pred             CCEEEEEEEE-----------cC-CCcEEEECCCCCCH--HHHHHHHHHHhc-CCEEEEEeCCCCCCCCCCc---ccccc
Confidence            6888885432           22 26788999996443  456666777765 6899999999966543321   01111


Q ss_pred             ccchHHHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          551 GIVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       551 g~~~~~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                       .....+..+.+. .+.+..  ..+++.++|||+||.+++.++ .+|+.+++++...+..
T Consensus        78 -~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~  134 (298)
T d1mj5a_          78 -RYAYAEHRDYLDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA  134 (298)
T ss_dssp             -SSCHHHHHHHHHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECC
T ss_pred             -ccccchhhhhhcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeecccccc
Confidence             122333333333 344442  346899999999999999999 8999999988776653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.77  E-value=2e-07  Score=91.90  Aligned_cols=268  Identities=13%  Similarity=0.101  Sum_probs=145.2

Q ss_pred             HHhccCCccCceEEcCCCcEEEEeecCCCC--CceEEEEcCCCCCCCCccc-CCCCCccceeeeecCC--ceEEEeCC-E
Q 006979           83 VVSGASKRLGGTAVDGHGRLIWLESRPTEA--GRGVLVKEPAKAGDEPSDI-TPKEYAVRTTAQEYGG--GAFRIFGD-T  156 (623)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~--g~~~l~~~~~~~gg~~~~l-~p~~~~~r~~~~~~g~--~~~~~s~d-~  156 (623)
                      .+.+.-..++++.|+|++.+|+++......  -...|++++..++ ..... .+.. .      ..++  ....++++ .
T Consensus        12 ~v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~-~~~~~~~~~~-~------~~~g~P~Gl~~~~dg~   83 (314)
T d1pjxa_          12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG-KKTVICKPEV-N------GYGGIPAGCQCDRDAN   83 (314)
T ss_dssp             EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC-CEEEEECCEE-T------TEECCEEEEEECSSSS
T ss_pred             EeecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCC-cEEEEECCcc-c------cCCCcceeEEEeCCCC
Confidence            344444567889999877899886442100  0123788877633 22111 1211 0      0111  12444444 3


Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCC-CCCeeecceeeCCCCCEEEEEEeccC-------CCCCCceeEEEEEEc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYG-EPLVSYADGIFDPRFNRYVTVREDRR-------QDALNSTTEIVAIAL  228 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~-~~~~~~~d~~~sPdG~~l~~v~~~~~-------~~~~~~~~~L~~idl  228 (623)
                      ++|+....+.|++++.+++  ....+....+ .+....+|..++|+|+. +++.....       .........||+++.
T Consensus        84 ~l~vad~~~~i~~~~~~g~--~~~~~~~~~~g~~~~~pndl~~d~~G~l-yvtd~~~~~~~~~~~~~~~~~~G~v~~~~~  160 (314)
T d1pjxa_          84 QLFVADMRLGLLVVQTDGT--FEEIAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             EEEEEETTTEEEEEETTSC--EEECCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             EEEEEECCCeEEEEeCCCc--EEEEEeccccccccCCCcEEEECCCCCE-EEecCccCcccccccceeccCCceEEEEee
Confidence            3444434456999998765  3333332211 11123467899999974 33321110       011234578999998


Q ss_pred             CCCCcccceecccCCCcccceeeCCCCC----EEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979          229 NGQNIQEPKVLVSGSDFYAFPRMDPRGE----RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       229 ~~g~~~~~~~l~~~~~~~~~p~wSPDG~----~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  304 (623)
                      ++.    ...+..+..+.++..|+||++    +|++..  .     ...+|+.++++..+.+..++++......-...+.
T Consensus       161 dg~----~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d--~-----~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         161 DGQ----MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE--T-----PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             TSC----EEEEEEEESSEEEEEEEECTTSCEEEEEEEE--T-----TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             cCc----eeEeeCCcceeeeeEECCCCCcceeEEEEEe--e-----cccceEEeeccCccccceeeEEEEccccccccce
Confidence            764    344444444455678999875    565553  2     2457999998877665555554332211002345


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEE-EeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEE
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL  383 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L  383 (623)
                      .++...+|+|| +++.  +..+|+++|+++++... +.......         ..+.|-   ++++.||++....  .+|
T Consensus       230 GiavD~~Gnly-Va~~--~~g~I~~~dp~~g~~~~~i~~p~~~~---------t~~afg---~d~~~lyVt~~~~--g~i  292 (314)
T d1pjxa_         230 GMDFDEDNNLL-VANW--GSSHIEVFGPDGGQPKMRIRCPFEKP---------SNLHFK---PQTKTIFVTEHEN--NAV  292 (314)
T ss_dssp             EEEEBTTCCEE-EEEE--TTTEEEEECTTCBSCSEEEECSSSCE---------EEEEEC---TTSSEEEEEETTT--TEE
T ss_pred             eeEEecCCcEE-EEEc--CCCEEEEEeCCCCEEEEEEECCCCCE---------EEEEEe---CCCCEEEEEECCC--CcE
Confidence            67888999765 4444  34579999998876433 32111111         123332   2777898887443  468


Q ss_pred             EEEeCC
Q 006979          384 GILDDF  389 (623)
Q Consensus       384 ~~~d~~  389 (623)
                      ++++..
T Consensus       293 ~~~~~~  298 (314)
T d1pjxa_         293 WKFEWQ  298 (314)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            888754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.76  E-value=5.2e-07  Score=88.62  Aligned_cols=233  Identities=8%  Similarity=0.007  Sum_probs=130.9

Q ss_pred             eCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979          153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (623)
Q Consensus       153 s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~  232 (623)
                      .++.+++..  ++.++++++++. ...+.++..    ........|||||++|+....+         +.|.++|+.++.
T Consensus        28 ~g~~l~~~~--~~~v~i~~~~~~-~~~~~~~~H----~~~v~~~~~sp~g~~latg~~d---------g~i~iwd~~~~~   91 (311)
T d1nr0a1          28 AGDKIQYCN--GTSVYTVPVGSL-TDTEIYTEH----SHQTTVAKTSPSGYYCASGDVH---------GNVRIWDTTQTT   91 (311)
T ss_dssp             TSSEEEEEE--TTEEEEEETTCS-SCCEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEESSSTT
T ss_pred             CCCEEEEEe--CCEEEEEECCCC-ceeEEEcCC----CCCEEEEEEeCCCCeEeccccC---------ceEeeeeeeccc
Confidence            344677764  445999999865 234455442    3456778899999988765554         568888988764


Q ss_pred             cccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       233 ~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                      ......+......+....|+|||++|+....+..      ..+.+.+++.+.   ....+.+..    ..+....|+|+|
T Consensus        92 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~------~~~~v~~~~~~~---~~~~l~~h~----~~v~~v~~~~~~  158 (311)
T d1nr0a1          92 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE------RFGHVFLFDTGT---SNGNLTGQA----RAMNSVDFKPSR  158 (311)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS------CSEEEEETTTCC---BCBCCCCCS----SCEEEEEECSSS
T ss_pred             cccccccccccCcccccccccccccccccccccc------cccccccccccc---ccccccccc----cccccccccccc
Confidence            2111223323344556789999999987764332      125566777653   222233333    345678899999


Q ss_pred             c-EEEEEeCCCCeeeEEEEecCCCeEEEEeec-ccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC
Q 006979          313 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (623)
Q Consensus       313 ~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~  390 (623)
                      + ++..... ++  .|..+|..+++....... ...+....|.            |+++.++ +...++.-.+  +|...
T Consensus       159 ~~~l~sgs~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~v~~~------------p~~~~l~-~~~~d~~v~~--~d~~~  220 (311)
T d1nr0a1         159 PFRIISGSD-DN--TVAIFEGPPFKFKSTFGEHTKFVHSVRYN------------PDGSLFA-STGGDGTIVL--YNGVD  220 (311)
T ss_dssp             SCEEEEEET-TS--CEEEEETTTBEEEEEECCCSSCEEEEEEC------------TTSSEEE-EEETTSCEEE--EETTT
T ss_pred             eeeeccccc-cc--ccccccccccccccccccccccccccccC------------ccccccc-cccccccccc--ccccc
Confidence            8 4443333 34  355667777764444322 2222222333            2666554 4444555444  46555


Q ss_pred             Ccee-ecccC-------CcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          391 HSLS-LLDIP-------FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       391 ~~~~-~lt~~-------~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      +... .+...       ...+..+  +++++.++ +++..   ..|+..|+.+++.
T Consensus       221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~-tgs~D---g~v~iwd~~t~~~  272 (311)
T d1nr0a1         221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASAD---KTIKIWNVATLKV  272 (311)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE-EEETT---SEEEEEETTTTEE
T ss_pred             ccccccccccccccccccccccccccCCCCCEEE-EEeCC---CeEEEEECCCCcE
Confidence            4432 22211       1235444  55666544 44322   3688888887763

>d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carbon-carbon bond hydrolase
domain: Meta cleavage compound hydrolase CarC
species: Janthinobacterium sp. J3 [TaxId: 213804]

Probab=98.76  E-value=1.4e-08  Score=96.91  Aligned_cols=115  Identities=14%  Similarity=0.110  Sum_probs=74.1

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc-CcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccC
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR  549 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~-~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~  549 (623)
                      ||.+++..-   .        ++. |.||++||.+..... ..|......| ++||.|+++|.||.|.....     .  
T Consensus        10 dg~~l~y~~---~--------G~g-~~vvllHG~~~~~~~~~~~~~~~~~l-~~~~~v~~~D~~G~G~S~~~-----~--   69 (268)
T d1j1ia_          10 GGVETRYLE---A--------GKG-QPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLGFGKTAKP-----D--   69 (268)
T ss_dssp             TTEEEEEEE---E--------CCS-SEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCC-----S--
T ss_pred             CCEEEEEEE---E--------cCC-CeEEEECCCCCCccHHHHHHHHHHHH-hcCCEEEEEcccccccccCC-----c--
Confidence            788887432   2        222 458889998543322 2344455566 56999999999997654321     1  


Q ss_pred             CccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       550 ~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                       .....++....+..++++-.+ .+++.++|||+||.+++.++ .+|++++++|...|.
T Consensus        70 -~~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~  126 (268)
T d1j1ia_          70 -IEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSA  126 (268)
T ss_dssp             -SCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred             -cccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCC
Confidence             112233433333333332112 25799999999999999988 899999999988764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.6e-06  Score=85.59  Aligned_cols=245  Identities=8%  Similarity=-0.026  Sum_probs=136.4

Q ss_pred             ecCCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCcee
Q 006979          144 EYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT  221 (623)
Q Consensus       144 ~~g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~  221 (623)
                      ...+.+.+++++ ..+++.. ++.|.++|+..+ .....+... ...........+|+|||++|+....+         .
T Consensus        51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~-~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d---------g  119 (337)
T d1gxra_          51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP-GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA---------S  119 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEEC-BSEEEEEETTST-TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---------S
T ss_pred             CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCC-cccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc---------c
Confidence            345667777776 4455543 677999998754 122211110 00112345678899999998776554         4


Q ss_pred             EEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccc
Q 006979          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE  301 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~  301 (623)
                      .|.++|+..........+...........|+||+..|+....+.        .+.+.++.++.   ......+..    .
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--------~i~~~~~~~~~---~~~~~~~~~----~  184 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG--------NIAVWDLHNQT---LVRQFQGHT----D  184 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTTE---EEEEECCCS----S
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc--------ccccccccccc---ccccccccc----c
Confidence            68888887643111122333333344567999999887655332        37888887662   233333333    3


Q ss_pred             cCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeE
Q 006979          302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (623)
Q Consensus       302 ~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~  381 (623)
                      .+....|+++++.++.... ++  .+..+|..+++..........+....|.            ++++.++ +...++. 
T Consensus       185 ~v~~l~~s~~~~~~~~~~~-d~--~v~i~d~~~~~~~~~~~~~~~i~~l~~~------------~~~~~l~-~~~~d~~-  247 (337)
T d1gxra_         185 GASCIDISNDGTKLWTGGL-DN--TVRSWDLREGRQLQQHDFTSQIFSLGYC------------PTGEWLA-VGMESSN-  247 (337)
T ss_dssp             CEEEEEECTTSSEEEEEET-TS--EEEEEETTTTEEEEEEECSSCEEEEEEC------------TTSSEEE-EEETTSC-
T ss_pred             ccccccccccccccccccc-cc--cccccccccceeecccccccceEEEEEc------------ccccccc-eeccccc-
Confidence            4567789999985555544 34  4556677776643333222222222222            2555554 4444554 


Q ss_pred             EEEEEeCCCCceeecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          382 YLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       382 ~L~~~d~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                       +.++|..+++..........+..+  +++++.++ +++..   ..|..+++..++.
T Consensus       248 -i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~-s~s~D---g~i~iwd~~~~~~  299 (337)
T d1gxra_         248 -VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV-STGKD---NLLNAWRTPYGAS  299 (337)
T ss_dssp             -EEEEETTSSCEEEECCCSSCEEEEEECTTSSEEE-EEETT---SEEEEEETTTCCE
T ss_pred             -cccccccccccccccccccccceEEECCCCCEEE-EEeCC---CeEEEEECCCCCE
Confidence             455677776665544444455555  56666554 33322   4577888877753

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.7e-06  Score=85.55  Aligned_cols=264  Identities=8%  Similarity=0.005  Sum_probs=145.1

Q ss_pred             CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCC
Q 006979           88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ  165 (623)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~  165 (623)
                      ...+..+.++| +..|+ .-   . +|...||.....  .....+....    ..-|...+.+.+++++ ..+++...++
T Consensus        51 ~~~V~~v~fs~~g~~la-tg---~-dg~V~iWd~~~~--~~~~~~~~~~----~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          51 GEVVCAVTISNPTRHVY-TG---G-KGCVKVWDISHP--GNKSPVSQLD----CLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             SSCCCEEEECSSSSEEE-EE---C-BSEEEEEETTST--TCCSCSEEEE----CSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             CCcEEEEEECCCCCEEE-EE---E-CCEEEEEEccCC--cccceeEEee----ecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence            34567889998 55444 32   2 366667765433  1111111000    0001222456677766 4556666788


Q ss_pred             cEEEEeCCCCCCCce---ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceeccc-
Q 006979          166 RLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-  241 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~---~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~-  241 (623)
                      .|.++|+...  ..+   .+...    ........|+|++..++....+         ..+.++++.+++   ...... 
T Consensus       120 ~i~iwd~~~~--~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d---------~~i~~~~~~~~~---~~~~~~~  181 (337)
T d1gxra_         120 TLSIWDLAAP--TPRIKAELTSS----APACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQT---LVRQFQG  181 (337)
T ss_dssp             EEEEEECCCC----EEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTE---EEEEECC
T ss_pred             cccccccccc--ccccccccccc----cccccccccccccccccccccc---------cccccccccccc---ccccccc
Confidence            8999998754  222   22221    1234456799999987765543         458888988876   333322 


Q ss_pred             CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCC
Q 006979          242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK  321 (623)
Q Consensus       242 ~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~  321 (623)
                      .........|+|||+.++....+        ..+.++|+..+.   ..... ...    ..+....|+|++++++.... 
T Consensus       182 ~~~~v~~l~~s~~~~~~~~~~~d--------~~v~i~d~~~~~---~~~~~-~~~----~~i~~l~~~~~~~~l~~~~~-  244 (337)
T d1gxra_         182 HTDGASCIDISNDGTKLWTGGLD--------NTVRSWDLREGR---QLQQH-DFT----SQIFSLGYCPTGEWLAVGME-  244 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT--------SEEEEEETTTTE---EEEEE-ECS----SCEEEEEECTTSSEEEEEET-
T ss_pred             ccccccccccccccccccccccc--------ccccccccccce---eeccc-ccc----cceEEEEEcccccccceecc-
Confidence            23345567899999998876533        348888987762   22222 222    34567889999985555544 


Q ss_pred             CCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCc
Q 006979          322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT  401 (623)
Q Consensus       322 ~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~  401 (623)
                      ++.  +..+|..+++..........+....|+            |+++.|+ +...+|.  |.++|...++.........
T Consensus       245 d~~--i~i~d~~~~~~~~~~~~~~~i~~v~~s------------~~g~~l~-s~s~Dg~--i~iwd~~~~~~~~~~~~~~  307 (337)
T d1gxra_         245 SSN--VEVLHVNKPDKYQLHLHESCVLSLKFA------------YCGKWFV-STGKDNL--LNAWRTPYGASIFQSKESS  307 (337)
T ss_dssp             TSC--EEEEETTSSCEEEECCCSSCEEEEEEC------------TTSSEEE-EEETTSE--EEEEETTTCCEEEEEECSS
T ss_pred             ccc--cccccccccccccccccccccceEEEC------------CCCCEEE-EEeCCCe--EEEEECCCCCEEEEccCCC
Confidence            344  555676666654443332233333333            2666554 4445565  5556777666543333334


Q ss_pred             ceEee--eecCCEEE
Q 006979          402 DIDNI--TLGNDCLF  414 (623)
Q Consensus       402 ~v~~~--~~~~~~~~  414 (623)
                      .+..+  +++++.++
T Consensus       308 ~v~~~~~s~d~~~l~  322 (337)
T d1gxra_         308 SVLSCDISVDDKYIV  322 (337)
T ss_dssp             CEEEEEECTTSCEEE
T ss_pred             CEEEEEEeCCCCEEE
Confidence            45444  55555443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.74  E-value=1.6e-07  Score=91.72  Aligned_cols=233  Identities=9%  Similarity=-0.027  Sum_probs=133.7

Q ss_pred             eCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 006979          153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN  232 (623)
Q Consensus       153 s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~  232 (623)
                      .++.|+|++...++|+++|++++  ..+.....     .......+.++|+.|+. .+          ..|+++|+++++
T Consensus        28 ~~~~l~wvDi~~~~I~r~d~~~g--~~~~~~~~-----~~~~~i~~~~dg~l~va-~~----------~gl~~~d~~tg~   89 (295)
T d2ghsa1          28 ASGTAWWFNILERELHELHLASG--RKTVHALP-----FMGSALAKISDSKQLIA-SD----------DGLFLRDTATGV   89 (295)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTT--EEEEEECS-----SCEEEEEEEETTEEEEE-ET----------TEEEEEETTTCC
T ss_pred             CCCEEEEEECCCCEEEEEECCCC--eEEEEECC-----CCcEEEEEecCCCEEEE-Ee----------CccEEeecccce
Confidence            35589999988889999999987  45544332     23445667788876654 32          459999999987


Q ss_pred             cccceecccCC---C--cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCce
Q 006979          233 IQEPKVLVSGS---D--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK  307 (623)
Q Consensus       233 ~~~~~~l~~~~---~--~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
                         .+.+....   .  ..+.....|+|+ |++........ -....+|..  ..+.   ...+..+.     .....+.
T Consensus        90 ---~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~-~~~g~l~~~--~~g~---~~~~~~~~-----~~~Ng~~  154 (295)
T d2ghsa1          90 ---LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAE-TGAGSIYHV--AKGK---VTKLFADI-----SIPNSIC  154 (295)
T ss_dssp             ---EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCC-TTCEEEEEE--ETTE---EEEEEEEE-----SSEEEEE
T ss_pred             ---eeEEeeeecCCCcccceeeEECCCCC-EEEEecccccc-ccceeEeee--cCCc---EEEEeecc-----CCcceee
Confidence               55554321   1  234557999998 66665443221 123345544  3441   23333322     2345789


Q ss_pred             eCCCCcEEEEEeCCCCeeeEEEEecCC--C----eEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeE
Q 006979          308 WSSKGELFFVTDRKNGFWNLHKWIESN--N----EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (623)
Q Consensus       308 ws~DG~l~~~~~~~~g~~~L~~~d~~~--~----~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~  381 (623)
                      |++|++.+|.++.  ....|++++.+.  +    +.+.........+.|      +.+.+-    .++.|+++....  .
T Consensus       155 ~s~d~~~l~~~dt--~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~p------dG~~vD----~~GnlWva~~~~--g  220 (295)
T d2ghsa1         155 FSPDGTTGYFVDT--KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM------DGSVCD----AEGHIWNARWGE--G  220 (295)
T ss_dssp             ECTTSCEEEEEET--TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE------EEEEEC----TTSCEEEEEETT--T
T ss_pred             ecCCCceEEEeec--ccceeeEeeecccccccccceEEEeccCcccccc------cceEEc----CCCCEEeeeeCC--C
Confidence            9999995555554  445677776542  2    122222111111111      223332    233455544333  3


Q ss_pred             EEEEEeCCCCceeecccCCcceEee---eecCCEEEEEEecCCC----------CCeEEEEEcC
Q 006979          382 YLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGASGVE----------PSSVAKVTLD  432 (623)
Q Consensus       382 ~L~~~d~~~~~~~~lt~~~~~v~~~---~~~~~~~~~~~~s~~~----------~~~ly~~~l~  432 (623)
                      .|+++|++++.+..+..|......+   -++.+++|++.++...          ...||++++.
T Consensus       221 ~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~~  284 (295)
T d2ghsa1         221 AVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGIE  284 (295)
T ss_dssp             EEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSSC
T ss_pred             ceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEcCC
Confidence            6899999988888887775444443   3567788887654322          3467776543

>d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase/thioesterase 1
domain: Acyl protein thioesterase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.7e-09  Score=99.69  Aligned_cols=114  Identities=11%  Similarity=-0.053  Sum_probs=70.0

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCC------CCCchhHHHhhccCC-ccchHH---H----
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS------TGYGREFRERLLGRW-GIVDVN---D----  557 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs------~~~g~~~~~~~~~~~-g~~~~~---D----  557 (623)
                      .+..++||++||...  ....|......+...++.++.++-+..      +..+..|........ ...+.+   +    
T Consensus        18 ~~~~~~VI~lHG~G~--~~~~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~~   95 (229)
T d1fj2a_          18 RKATAAVIFLHGLGD--TGHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAEN   95 (229)
T ss_dssp             SCCSEEEEEECCSSS--CHHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCC--CHHHHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHHH
Confidence            344578999999732  223344445556678999999874321      001111111000000 111222   2    


Q ss_pred             HHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       558 ~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +...++.+.+. .+|++||+|+|+|+||.+++.++ .+++.|+++|+++|..
T Consensus        96 l~~li~~~~~~-~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~l  146 (229)
T d1fj2a_          96 IKALIDQEVKN-GIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWL  146 (229)
T ss_dssp             HHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCC
T ss_pred             HHHHhhhhhhc-CCCccceeeeecccchHHHHHHHHhhccccCccccccccc
Confidence            22333344444 48999999999999999999888 8899999999998854

>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Bacterial lipase
domain: Lipase
species: Chromobacterium viscosum [TaxId: 42739]

Probab=98.72  E-value=1.3e-08  Score=101.00  Aligned_cols=104  Identities=12%  Similarity=0.054  Sum_probs=74.6

Q ss_pred             CCCCCEEEEecCCCCCccc----CcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHh
Q 006979          492 EEKPPLLVKSHGGPTSEAR----GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG  567 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~----~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~  567 (623)
                      ..++|+| ++||.......    ..|....+.|+++||.|+.+|+||.+....          .....+++.+.++.+++
T Consensus         6 ~~k~Pvv-lvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g~g~s~~----------~~~~~~~l~~~i~~~~~   74 (319)
T d1cvla_           6 ATRYPVI-LVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDG----------PNGRGEQLLAYVKQVLA   74 (319)
T ss_dssp             CCSSCEE-EECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBCSSCTTS----------TTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEE-EECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCCCCCCCC----------CcccHHHHHHHHHHHHH
Confidence            3457865 58997543321    135668899999999999999998543211          01124555555655544


Q ss_pred             CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          568 SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       568 ~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      .  .+.++|.++|||+||.++..++ .+|++++.+|.++++.
T Consensus        75 ~--~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~p~  114 (319)
T d1cvla_          75 A--TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTPH  114 (319)
T ss_dssp             H--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred             H--hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECCCC
Confidence            3  2357999999999999999999 8999999999998764

>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Type-B carboxylesterase/lipase
species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]

Probab=98.72  E-value=5.2e-09  Score=112.05  Aligned_cols=128  Identities=20%  Similarity=0.252  Sum_probs=87.9

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cC--CHH--hHHHHcCceEEEEECCCC-CCCC--chhHHH
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL--NLS--IQYWTSRGWAFVDVNYGG-STGY--GREFRE  544 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~--~~~--~~~~a~~G~~v~~~d~rG-s~~~--g~~~~~  544 (623)
                      ..|+.-+|.|++..    +++++|++|++|||....... .+  ...  ....++++++|+.+|||= --||  ..+...
T Consensus       104 DCL~LnI~~P~~~~----~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~  179 (544)
T d1thga_         104 DCLYLNVFRPAGTK----PDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA  179 (544)
T ss_dssp             CCCEEEEEEETTCC----TTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred             cCCEEEEEECCCCC----CCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhc
Confidence            35777888887632    257899999999995433222 12  122  223357899999999992 1111  112222


Q ss_pred             hhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhcCC---------CceeEEEecccC
Q 006979          545 RLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALAFR---------DTFKAGASLYGV  607 (623)
Q Consensus       545 ~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~~---------~~f~a~v~~~g~  607 (623)
                      ...+++|   +.|++.|++|+.++-   --||+||-|+|+|+||..+..++.-|         .+|+.+|+.+|.
T Consensus       180 ~~~gN~G---l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~  251 (544)
T d1thga_         180 EGNTNAG---LHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG  251 (544)
T ss_dssp             HTCTTHH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred             cccccHH---HHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence            2344555   789999999998851   26999999999999999988776322         489999999884

>d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Biotin biosynthesis protein BioH
domain: Biotin biosynthesis protein BioH
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.5e-08  Score=94.67  Aligned_cols=94  Identities=14%  Similarity=0.124  Sum_probs=67.8

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      .|.||++||.+..  ...|...++.|+ .||.|+++|+||.|.+.         .....+..|+.+.+   ....   .+
T Consensus        11 ~~~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~---------~~~~~~~~d~~~~~---~~~~---~~   72 (256)
T d1m33a_          11 NVHLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPGFGRSR---------GFGALSLADMAEAV---LQQA---PD   72 (256)
T ss_dssp             SSEEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTTSTTCC---------SCCCCCHHHHHHHH---HTTS---CS
T ss_pred             CCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEeCCCCCCcc---------cccccccccccccc---cccc---cc
Confidence            3567789998543  345667778886 57999999999965432         23334455554433   3332   46


Q ss_pred             ceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          575 RLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                      ++.++|||+||.+++.++ .+|+.+++.+...+
T Consensus        73 ~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~  105 (256)
T d1m33a_          73 KAIWLGWSLGGLVASQIALTHPERVRALVTVAS  105 (256)
T ss_dssp             SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred             ceeeeecccchHHHHHHHHhCCcccceeeeeec
Confidence            899999999999999998 89999998887654

>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Type-B carboxylesterase/lipase
species: Candida cylindracea, cholesterol esterase [TaxId: 44322]

Probab=98.71  E-value=9.3e-09  Score=109.77  Aligned_cols=128  Identities=19%  Similarity=0.205  Sum_probs=87.2

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCC--HH--hHHHHcCceEEEEECCCCC-CCCc--hhHHH
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILN--LS--IQYWTSRGWAFVDVNYGGS-TGYG--REFRE  544 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~--~~--~~~~a~~G~~v~~~d~rGs-~~~g--~~~~~  544 (623)
                      -.|+.-+|.|++..    .+++.|+||++|||....... .+.  ..  ...+++++++|+.+|||-+ -|+-  .....
T Consensus        96 DCL~LnI~~P~~~~----~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~  171 (534)
T d1llfa_          96 DCLTINVVRPPGTK----AGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA  171 (534)
T ss_dssp             CCCEEEEEECTTCC----TTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred             cCCEEEEEECCCCC----CCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCccccc
Confidence            35788888886532    267899999999996432222 222  12  2335578999999999942 1111  11222


Q ss_pred             hhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhc--C-------CCceeEEEecccC
Q 006979          545 RLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA--F-------RDTFKAGASLYGV  607 (623)
Q Consensus       545 ~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~--~-------~~~f~a~v~~~g~  607 (623)
                      ...+++   -..|++.|++|+.+.-   --||+||-|+|+|+||..+..++.  .       ..+|+.+|+.+|.
T Consensus       172 ~~~gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs  243 (534)
T d1llfa_         172 EGSGNA---GLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA  243 (534)
T ss_dssp             HTCTTH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred             cccccc---chhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence            223344   4789999999998852   169999999999999998876652  1       1369999999983

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.70  E-value=4e-07  Score=94.02  Aligned_cols=211  Identities=10%  Similarity=-0.016  Sum_probs=117.0

Q ss_pred             eCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEE
Q 006979          198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV  277 (623)
Q Consensus       198 ~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v  277 (623)
                      ...|...++++.+...       +.+.++|.++++.  +..+..+ ......+||||||+||....+        ..+.+
T Consensus        26 ~~~~~~~~~~v~~~d~-------g~v~v~D~~t~~v--~~~~~~g-~~~~~v~fSpDG~~l~~~s~d--------g~v~~   87 (432)
T d1qksa2          26 NDWDLENLFSVTLRDA-------GQIALIDGSTYEI--KTVLDTG-YAVHISRLSASGRYLFVIGRD--------GKVNM   87 (432)
T ss_dssp             SCCCGGGEEEEEETTT-------TEEEEEETTTCCE--EEEEECS-SCEEEEEECTTSCEEEEEETT--------SEEEE
T ss_pred             ecCCCCcEEEEEEcCC-------CEEEEEECCCCcE--EEEEeCC-CCeeEEEECCCCCEEEEEcCC--------CCEEE
Confidence            3444445666665432       6799999999873  3445444 345567899999999765422        24888


Q ss_pred             EEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeeccc-ccccccccccC
Q 006979          278 GYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRPLWVFGI  356 (623)
Q Consensus       278 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~-~~~~~~w~~~~  356 (623)
                      +|+.++.......+-.+..+.  .....+.|+|||+.++++..  ....+..+|.++++......... ......+....
T Consensus        88 ~d~~t~~~~~~~~i~~~~~~~--~~~~s~~~SpDG~~l~vs~~--~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~  163 (432)
T d1qksa2          88 IDLWMKEPTTVAEIKIGSEAR--SIETSKMEGWEDKYAIAGAY--WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP  163 (432)
T ss_dssp             EETTSSSCCEEEEEECCSEEE--EEEECCSTTCTTTEEEEEEE--ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred             EEeeCCCceEEEEEecCCCCC--CeEEecccCCCCCEEEEEcC--CCCeEEEEeCccccceeeeccCCccccceeccCCC
Confidence            898876431122222222211  34456788999995555444  22346677888887665543211 11111222222


Q ss_pred             cceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee---ecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcC
Q 006979          357 NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS---LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLD  432 (623)
Q Consensus       357 ~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~---~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~  432 (623)
                      +... +-.+++++.++++....+  .+..++..+.+..   .+..+..... .+++++.++++....   ...+..++.+
T Consensus       164 ~~~~-v~~s~dg~~~~vs~~~~~--~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~---~~~v~v~d~~  237 (432)
T d1qksa2         164 RVAA-ILASHYRPEFIVNVKETG--KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTK  237 (432)
T ss_dssp             CEEE-EEECSSSSEEEEEETTTT--EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETT
T ss_pred             ceeE-EEECCCCCEEEEEEccCC--eEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc---cceEEEeecc
Confidence            2111 112457777777664444  5667777665433   3333322222 237778777766543   2357778877


Q ss_pred             CCcc
Q 006979          433 DHKL  436 (623)
Q Consensus       433 ~~~~  436 (623)
                      +++.
T Consensus       238 ~~~~  241 (432)
T d1qksa2         238 EGKL  241 (432)
T ss_dssp             TTEE
T ss_pred             cceE
Confidence            7654

>d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Hypothetical esterase YJL068C
domain: Hypothetical esterase YJL068C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=1.6e-08  Score=98.75  Aligned_cols=148  Identities=16%  Similarity=0.137  Sum_probs=89.3

Q ss_pred             CcEEEEeecCCCCeEEEEEEEcCCCCCCCC---CCCCCCCEEEEecCCCCCcccCcC---CHHhHHHHcCceEEEEECCC
Q 006979          460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQA---SPEEKPPLLVKSHGGPTSEARGIL---NLSIQYWTSRGWAFVDVNYG  533 (623)
Q Consensus       460 ~~~~i~~~~~~dg~~i~~~l~~P~~~~~~~---~~~~~~Pliv~~hGg~~~~~~~~~---~~~~~~~a~~G~~v~~~d~r  533 (623)
                      +...+++.+..-|.+....+|.|.+  |..   ++++++|+|+++||.+...  ..|   .....+..+.|++|+.++.-
T Consensus        13 ~~~~~s~~S~~l~~~~~~~VyLP~~--y~~~~~~~~~~yPVLYlLhG~~~~~--~~w~~~~~~~~~~~~~~~~vv~~~~~   88 (299)
T d1pv1a_          13 RLIKLSHNSNSTKTSMNVNIYLPKH--YYAQDFPRNKRIPTVFYLSGLTCTP--DNASEKAFWQFQADKYGFAIVFPDTS   88 (299)
T ss_dssp             EEEEEEEECSSSSSEEEEEEEECTT--TTSCCCSSCTTBCEEEEECCTTCCH--HHHHHHSCHHHHHHHHTCEEEECCSS
T ss_pred             EEEEEEEECcccCCceEEEEEeCCc--ccccCcccCCCCCEEEEcCCCCCCH--HHHHHhhhHHHHHHHcCCceecCCCc
Confidence            3455667765467889999999987  432   2467899999999974322  222   12345556789999998732


Q ss_pred             CCC-------------CCchhH-HHhhccCC-ccchHHHHH--HHHHHHHhCC-------CCCCCceEEEEcChHHHHHH
Q 006979          534 GST-------------GYGREF-RERLLGRW-GIVDVNDCC--SCATFLVGSG-------KADEKRLCITGGSAGGYTTL  589 (623)
Q Consensus       534 Gs~-------------~~g~~~-~~~~~~~~-g~~~~~D~~--~~~~~l~~~~-------~~d~~rv~i~G~S~GG~~~~  589 (623)
                      ...             +.+..| .+.....+ +....+|.+  +.+.++.++-       ..++++.+|.|+||||+.|+
T Consensus        89 p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl  168 (299)
T d1pv1a_          89 PRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAI  168 (299)
T ss_dssp             CCSTTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHH
T ss_pred             ccccccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHH
Confidence            110             000111 10000000 011233322  3344444322       23457899999999999999


Q ss_pred             HHh-c--CCCceeEEEecccCCCHH
Q 006979          590 AAL-A--FRDTFKAGASLYGVSIPV  611 (623)
Q Consensus       590 ~~~-~--~~~~f~a~v~~~g~~d~~  611 (623)
                      .++ +  +|++|+++++.+|+.++.
T Consensus       169 ~~al~~~~p~~f~~~~s~s~~~~~~  193 (299)
T d1pv1a_         169 CGYLKGYSGKRYKSCSAFAPIVNPS  193 (299)
T ss_dssp             HHHHHTGGGTCCSEEEEESCCCCST
T ss_pred             HHHHHhcCCCceEEEeeccCcCCcc
Confidence            877 4  589999999999987753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=3.3e-06  Score=82.46  Aligned_cols=271  Identities=8%  Similarity=0.026  Sum_probs=138.7

Q ss_pred             cCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeCC
Q 006979           87 ASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNYK  163 (623)
Q Consensus        87 ~~~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~~  163 (623)
                      .+..+..+.++| |+.|| +-.+.  +++..+|..+..  +....+....      -........++++|  .+++....
T Consensus        35 ~~~~v~~la~spDG~~L~-v~~~~--d~~i~~~~i~~~--~~~~~~~~~~------~~~~~p~~l~~spDg~~l~v~~~~  103 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLY-VGVRP--EFRVLAYRIAPD--DGALTFAAES------ALPGSLTHISTDHQGQFVFVGSYN  103 (333)
T ss_dssp             CSSCCCCEEECTTSSEEE-EEETT--TTEEEEEEECTT--TCCEEEEEEE------ECSSCCSEEEECTTSSEEEEEETT
T ss_pred             CCCCEeEEEEeCCCCEEE-EEECC--CCeEEEEEEeCC--CCcEEEeeec------ccCCCceEEEEcCCCCEEeecccC
Confidence            345677899999 66665 44332  467667776644  1222221100      00111234566666  56666655


Q ss_pred             CCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce---ecc
Q 006979          164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK---VLV  240 (623)
Q Consensus       164 ~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~---~l~  240 (623)
                      ++.+..++....  ......... ..........++||+++++......        ..+.+++..........   ...
T Consensus       104 ~~~v~~~~~~~~--~~~~~~~~~-~~~~~~~~v~~s~d~~~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~  172 (333)
T d1ri6a_         104 AGNVSVTRLEDG--LPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQ--------DRICLFTVSDDGHLVAQDPAEVT  172 (333)
T ss_dssp             TTEEEEEEEETT--EEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGG--------TEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCceeeeccccc--cceeccccc-CCCccceEEEeeecceeeecccccc--------ceeeEEEeccCCcceeeeceeee
Confidence            666776665533  221111100 0011234567999999887765433        44666666554210000   011


Q ss_pred             -cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCc-eeeeEEEcCC--CCCccccCcCceeCCCCcEEE
Q 006979          241 -SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGF--DPTIVESPTEPKWSSKGELFF  316 (623)
Q Consensus       241 -~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~ws~DG~l~~  316 (623)
                       ..........|++++++++... ...      ....+.++..... +.....+...  ............+++||+.++
T Consensus       173 ~~~g~~p~~i~~~~~~~~~~~~~-~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         173 TVEGAGPRHMVFHPNEQYAYCVN-ELN------SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEE-TTT------TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eecCCCccEEEEeccceeEEeec-ccc------CceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence             1112223457999999876654 322      2344555443321 1111111111  100002334567999999655


Q ss_pred             EEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeec
Q 006979          317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL  396 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~l  396 (623)
                      ......+...++.++..+...+........ ..|      ..+.|.   |||++||++...++.-.+|.+|.++|+++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p------~~~a~s---pDGk~l~va~~~~~~v~v~~id~~tG~l~~~  315 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQPTE-TQP------RGFNVD---HSGKYLIAAGQKSHHISVYEIVGEQGLLHEK  315 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECS-SSC------CCEEEC---TTSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEeCCC-CCe------eEEEEe---CCCCEEEEEECCCCeEEEEEEECCCCcEEEE
Confidence            655535667777777655543333211100 111      223333   3999888776667788899999999887654

>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Esterase EstA
species: Aspergillus niger [TaxId: 5061]

Probab=98.67  E-value=8.3e-09  Score=109.69  Aligned_cols=128  Identities=20%  Similarity=0.180  Sum_probs=86.0

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-cCCHHhHHH-HcCceEEEEECCCC-CCCCch--hHHHhhcc
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYW-TSRGWAFVDVNYGG-STGYGR--EFRERLLG  548 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~-a~~G~~v~~~d~rG-s~~~g~--~~~~~~~~  548 (623)
                      .|+.-+|.|+...    .+++.|++|++|||....... .+......+ .+.+.+|+.+|||= .-||-.  +......+
T Consensus        80 CL~LnI~~P~~~~----~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~~~~~~~~~  155 (517)
T d1ukca_          80 CLFINVFKPSTAT----SQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDL  155 (517)
T ss_dssp             CCEEEEEEETTCC----TTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSSCT
T ss_pred             CCEEEEEeCCCCC----CCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccceeecCcccccccccc
Confidence            4777778886521    256789999999996433222 333333333 35678999999993 111111  11111122


Q ss_pred             CCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-cC----CCceeEEEecccCC
Q 006979          549 RWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-AF----RDTFKAGASLYGVS  608 (623)
Q Consensus       549 ~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~~----~~~f~a~v~~~g~~  608 (623)
                      ++|   +.|++.|++|+.++-   --||+||-|+|+|+||..+..++ ..    ..+|+.+|+.+|..
T Consensus       156 N~G---l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~  220 (517)
T d1ukca_         156 NAG---LLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW  220 (517)
T ss_dssp             THH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred             chh---HHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence            444   789999999998852   26999999999999999997665 32    24999999999964

>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Bacterial lipase
domain: Lipase A
species: Bacillus subtilis [TaxId: 1423]

Probab=98.67  E-value=1.1e-08  Score=92.33  Aligned_cols=100  Identities=18%  Similarity=0.119  Sum_probs=71.8

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK  574 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~  574 (623)
                      +|+ |++||...  ....|...++.|.++||.|+.++++|.+.......         ...+++...++.+.++  ...+
T Consensus         3 ~PV-v~vHG~~~--~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~i~~~~~~--~~~~   68 (179)
T d1ispa_           3 NPV-VMVHGIGG--ASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY---------NNGPVLSRFVQKVLDE--TGAK   68 (179)
T ss_dssp             CCE-EEECCTTC--CGGGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH---------HHHHHHHHHHHHHHHH--HCCS
T ss_pred             CCE-EEECCCCC--CHHHHHHHHHHHHHcCCeEEEEecCCccccccccc---------hhhhhHHHHHHHHHHh--cCCc
Confidence            465 56899843  44467788999999999999998887544322111         1245566666666554  2347


Q ss_pred             ceEEEEcChHHHHHHHHh-cC--CCceeEEEecccCC
Q 006979          575 RLCITGGSAGGYTTLAAL-AF--RDTFKAGASLYGVS  608 (623)
Q Consensus       575 rv~i~G~S~GG~~~~~~~-~~--~~~f~a~v~~~g~~  608 (623)
                      +|.|+||||||.++..++ .+  +++++..|.+++..
T Consensus        69 ~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~  105 (179)
T d1ispa_          69 KVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGAN  105 (179)
T ss_dssp             CEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCG
T ss_pred             eEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCC
Confidence            899999999999999888 44  67899999988764

>d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Thioesterases
domain: Palmitoyl protein thioesterase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.1e-08  Score=95.14  Aligned_cols=97  Identities=16%  Similarity=0.117  Sum_probs=69.3

Q ss_pred             CCEEEEecCCCCCcccCcCCHHhHHHHcC--ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979          495 PPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD  572 (623)
Q Consensus       495 ~Pliv~~hGg~~~~~~~~~~~~~~~~a~~--G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d  572 (623)
                      +|+ |++||.+.+  ...|...+.+|.+.  ||.|+++|+||.|...+.         .....+++...+..+.++.  +
T Consensus         3 ~Pv-vllHG~~~~--~~~~~~~~~~l~~~~~~~~v~~~d~~G~g~S~~~---------~~~~~~~~~~~l~~~l~~l--~   68 (268)
T d1pjaa_           3 KPV-IVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFDGRESLRP---------LWEQVQGFREAVVPIMAKA--P   68 (268)
T ss_dssp             CCE-EEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSCSGGGGSC---------HHHHHHHHHHHHHHHHHHC--T
T ss_pred             CCE-EEECCCCCC--HHHHHHHHHHHHhhCCCeEEEEeCCCCCCCCCCc---------cccCHHHHHHHHHHHHhcc--C
Confidence            465 568998543  34777788888874  899999999995433221         1123455555555554442  2


Q ss_pred             CCceEEEEcChHHHHHHHHh-cCCC-ceeEEEeccc
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AFRD-TFKAGASLYG  606 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~~~-~f~a~v~~~g  606 (623)
                       +++.++|||+||.+++.++ .+|+ +++..|...+
T Consensus        69 -~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~  103 (268)
T d1pjaa_          69 -QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS  103 (268)
T ss_dssp             -TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred             -CeEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence             7999999999999999999 8888 6998887766

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.65  E-value=8.8e-07  Score=91.37  Aligned_cols=199  Identities=7%  Similarity=-0.105  Sum_probs=111.9

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      ++++...++.|.++|.+++ ...+.+..+     ......+|||||++++....+         +.+.++|+.+++.+..
T Consensus        34 ~~v~~~d~g~v~v~D~~t~-~v~~~~~~g-----~~~~~v~fSpDG~~l~~~s~d---------g~v~~~d~~t~~~~~~   98 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTY-EIKTVLDTG-----YAVHISRLSASGRYLFVIGRD---------GKVNMIDLWMKEPTTV   98 (432)
T ss_dssp             EEEEETTTTEEEEEETTTC-CEEEEEECS-----SCEEEEEECTTSCEEEEEETT---------SEEEEEETTSSSCCEE
T ss_pred             EEEEEcCCCEEEEEECCCC-cEEEEEeCC-----CCeeEEEECCCCCEEEEEcCC---------CCEEEEEeeCCCceEE
Confidence            4556667788999999987 334555443     235578899999998765432         5688999988752212


Q ss_pred             eecccC---CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCC-----Ccc--ccCcCc
Q 006979          237 KVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-----TIV--ESPTEP  306 (623)
Q Consensus       237 ~~l~~~---~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~  306 (623)
                      ..+..+   ......|.|||||++|+......       ..+.++|.+++..   ...+.....     ...  ......
T Consensus        99 ~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~-------~~v~i~d~~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~v  168 (432)
T d1qksa2          99 AEIKIGSEARSIETSKMEGWEDKYAIAGAYWP-------PQYVIMDGETLEP---KKIQSTRGMTYDEQEYHPEPRVAAI  168 (432)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEET-------TEEEEEETTTCCE---EEEEECCEECTTTCCEESCCCEEEE
T ss_pred             EEEecCCCCCCeEEecccCCCCCEEEEEcCCC-------CeEEEEeCccccc---eeeeccCCccccceeccCCCceeEE
Confidence            223222   23455688999999987655332       3488889887642   222221110     000  111234


Q ss_pred             eeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       307 ~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                      ..++||+.++++..  +...++.+|..+.+...+..-.  .+.     ....+.+.   |+++.++..+...  ..+..+
T Consensus       169 ~~s~dg~~~~vs~~--~~~~i~~~d~~~~~~~~~~~i~--~g~-----~~~~~~~s---pdg~~~~va~~~~--~~v~v~  234 (432)
T d1qksa2         169 LASHYRPEFIVNVK--ETGKILLVDYTDLNNLKTTEIS--AER-----FLHDGGLD---GSHRYFITAANAR--NKLVVI  234 (432)
T ss_dssp             EECSSSSEEEEEET--TTTEEEEEETTCSSEEEEEEEE--CCS-----SEEEEEEC---TTSCEEEEEEGGG--TEEEEE
T ss_pred             EECCCCCEEEEEEc--cCCeEEEEEccCCCcceEEEEc--ccC-----ccccceEC---CCCCEEEEecccc--ceEEEe
Confidence            67888874444443  2335667777665533332110  010     01122333   3888777776433  356667


Q ss_pred             eCCCCcee
Q 006979          387 DDFGHSLS  394 (623)
Q Consensus       387 d~~~~~~~  394 (623)
                      |.++++..
T Consensus       235 d~~~~~~~  242 (432)
T d1qksa2         235 DTKEGKLV  242 (432)
T ss_dssp             ETTTTEEE
T ss_pred             ecccceEE
Confidence            87776654

>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Bacterial lipase
domain: Lipase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.63  E-value=5.3e-08  Score=94.56  Aligned_cols=100  Identities=14%  Similarity=0.024  Sum_probs=71.8

Q ss_pred             CCCCCEEEEecCCCCCccc---CcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhC
Q 006979          492 EEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS  568 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~---~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~  568 (623)
                      ..++| ||++||-......   ..|....+.|.++||.|+.+|++|.+   .....          .+++.+.++.+.+.
T Consensus         5 ~~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~~~---~~~~~----------a~~l~~~i~~~~~~   70 (285)
T d1ex9a_           5 QTKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLD---TSEVR----------GEQLLQQVEEIVAL   70 (285)
T ss_dssp             CCSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSS---CHHHH----------HHHHHHHHHHHHHH
T ss_pred             CCCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCCCC---CcHHH----------HHHHHHHHHHHHHH
Confidence            35678 6779996433222   23567889999999999999999843   22211          23444445544433


Q ss_pred             CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          569 GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       569 ~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                        ...+||.++||||||.++..++ .+|++++.+|.++.+
T Consensus        71 --~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~tP  108 (285)
T d1ex9a_          71 --SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP  108 (285)
T ss_dssp             --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred             --cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECCC
Confidence              1246899999999999999888 889999999988776

>d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Proline iminopeptidase-like
domain: Proline aminopeptidase
species: Serratia marcescens [TaxId: 615]

Probab=98.60  E-value=2.5e-07  Score=89.36  Aligned_cols=126  Identities=14%  Similarity=0.046  Sum_probs=82.9

Q ss_pred             EEEEeecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchh
Q 006979          462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE  541 (623)
Q Consensus       462 ~~i~~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~  541 (623)
                      +.-.++.. ||.+|+...+-+.+          -|.||++||.+.+..  .|...... .++||.|+++|.||.|.+...
T Consensus        12 ~~~~v~~~-dG~~i~y~~~G~~~----------g~pvvllHG~~~~~~--~w~~~~~~-l~~~~~vi~~D~rG~G~S~~~   77 (313)
T d1wm1a_          12 DSGWLDTG-DGHRIYWELSGNPN----------GKPAVFIHGGPGGGI--SPHHRQLF-DPERYKVLLFDQRGCGRSRPH   77 (313)
T ss_dssp             EEEEEECS-SSCEEEEEEEECTT----------SEEEEEECCTTTCCC--CGGGGGGS-CTTTEEEEEECCTTSTTCBST
T ss_pred             cCCEEEeC-CCcEEEEEEecCCC----------CCeEEEECCCCCccc--chHHHHHH-hhcCCEEEEEeCCCccccccc
Confidence            34446666 89999876664432          145778899975543  44444443 456999999999997654321


Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       542 ~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                            .........+..+.+..+.++  .+..++.++|||+||.+++.++ .++++++..+...+...
T Consensus        78 ------~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~~  138 (313)
T d1wm1a_          78 ------ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTL  138 (313)
T ss_dssp             ------TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCC
T ss_pred             ------ccccccchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeecccccc
Confidence                  111112234444444444433  2347999999999999999988 88999999988776543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.60  E-value=5.9e-06  Score=81.52  Aligned_cols=288  Identities=11%  Similarity=0.022  Sum_probs=151.0

Q ss_pred             cC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC--EEEEEeC---------CC
Q 006979           97 DG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD--TVIFSNY---------KD  164 (623)
Q Consensus        97 ~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d--~l~f~~~---------~~  164 (623)
                      +| +.++|..+.. .......+|.++..+| +....++..         + ....++++|  .+++...         .+
T Consensus        10 spdg~~~~v~~~~-~~~~~~~v~v~D~~tg-~~~~~~~~g---------~-~~~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_          10 APDARRVYVNDPA-HFAAVTQQFVIDGEAG-RVIGMIDGG---------F-LPNPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCCTTEEEEEECG-GGCSSEEEEEEETTTT-EEEEEEEEC---------S-SCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CCCCCEEEEEecc-cCCCcCeEEEEECCCC-cEEEEEECC---------C-CCceEEcCCCCEEEEEeCCCccccccCCC
Confidence            56 7777654422 2234556777776643 222222211         1 224566666  4665532         24


Q ss_pred             CcEEEEeCCCCCCCce-ecCCCCCCC---CeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc
Q 006979          165 QRLYKHSIDSKDSSPL-PITPDYGEP---LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV  240 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~-~Lt~~~~~~---~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~  240 (623)
                      +.|+++|+.++  ... .+.......   ........|+|||+++++......       ..+++++..+++.  ...+.
T Consensus        78 ~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~-------~~~~~~~~~~~~~--~~~~~  146 (355)
T d2bbkh_          78 DYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA-------PAVGVVDLEGKAF--KRMLD  146 (355)
T ss_dssp             EEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS-------CEEEEEETTTTEE--EEEEE
T ss_pred             CEEEEEECCCC--CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC-------ceeeeeecCCCcE--eeEEe
Confidence            56999999887  332 221110000   112235679999999887654321       5678888888762  22222


Q ss_pred             cCCCc-------ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          241 SGSDF-------YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       241 ~~~~~-------~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      .....       .....+++||+.+++...+..       .+.+.+.....        ....    .....+.+++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~-------~~~~~~~~~~~--------~~~~----~~~~~~~~~~~~~  207 (355)
T d2bbkh_         147 VPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG-------TPEITHTEVFH--------PEDE----FLINHPAYSQKAG  207 (355)
T ss_dssp             CCSEEEEEEEETTEEEEEETTSCEEEEECCSSS-------CCEEEECCCCS--------CTTS----CBCSCCEEETTTT
T ss_pred             cCCcceEeecCCcceEEEcCCCCEEEEEecCCC-------eEEEEeccccc--------ceec----ceeeeccccCCCC
Confidence            21111       112358899987766543321       13333333221        0011    2233456676666


Q ss_pred             -EEEEEeCCCCeeeEEEEecCCCeEEEEeecccc---cccccccccC-cceeEEeecCCCCEEEEEEEEC-------CeE
Q 006979          314 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE---FSRPLWVFGI-NSYEIIQSHGEKNLIACSYRQN-------GRS  381 (623)
Q Consensus       314 -l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~---~~~~~w~~~~-~~~~~l~~s~~~~~l~~~~~~~-------g~~  381 (623)
                       +++....  +  .++.++..+++...+......   .....+.+.. ..+.+   ++++..+++.....       +..
T Consensus       208 ~~~~~~~~--~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d2bbkh_         208 RLVWPTYT--G--KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY---HRALDRIYLLVDQRDEWRHKTASR  280 (355)
T ss_dssp             EEEEEBTT--S--EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE---ETTTTEEEEEEEECCTTCTTSCEE
T ss_pred             eEEEecCC--C--eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEE---eCCCCeEEEEeccCCceeecCCCC
Confidence             5555433  3  577777777765554422111   1112232221 22333   34788888777643       356


Q ss_pred             EEEEEeCCCCcee-ecccCCcceEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          382 YLGILDDFGHSLS-LLDIPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       382 ~L~~~d~~~~~~~-~lt~~~~~v~~--~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      .|+.+|..+++.. .+..+. ....  ++++++.++++....  ...|+++|+++++.
T Consensus       281 ~v~v~d~~t~~~~~~~~~~~-~~~~~a~spDG~~~l~v~~~~--d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTG--DKTLYIHDAESGEE  335 (355)
T ss_dssp             EEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCE
T ss_pred             eEEEEeCCCCcEEEEecCCC-CEEEEEEcCCCCeEEEEEECC--CCEEEEEECCCCCE
Confidence            8999999877653 444332 2223  378887766655432  25799999998874

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.60  E-value=5.7e-06  Score=84.72  Aligned_cols=106  Identities=8%  Similarity=-0.093  Sum_probs=69.0

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      ++++...++.|.++|+.++ .....+..+     ......+|||||++++....+         +.+.++|+++++....
T Consensus        34 ~~V~~~~dg~v~vwD~~t~-~~~~~l~~g-----~~~~~vafSPDGk~l~~~~~d---------~~v~vwd~~t~~~~~~   98 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSK-KIVKVIDTG-----YAVHISRMSASGRYLLVIGRD---------ARIDMIDLWAKEPTKV   98 (426)
T ss_dssp             EEEEETTTTEEEEEETTTC-SEEEEEECC-----SSEEEEEECTTSCEEEEEETT---------SEEEEEETTSSSCEEE
T ss_pred             EEEEEcCCCEEEEEECCCC-cEEEEEeCC-----CCeeEEEECCCCCEEEEEeCC---------CCEEEEEccCCceeEE
Confidence            4455667789999999987 334555443     234568899999988765443         4688999988762112


Q ss_pred             eecccC---CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCC
Q 006979          237 KVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG  284 (623)
Q Consensus       237 ~~l~~~---~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~  284 (623)
                      ..+..+   ......+.|||||++|+......       ..+.+.|...+.
T Consensus        99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~-------~~v~i~d~~~~~  142 (426)
T d1hzua2          99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWP-------PQFAIMDGETLE  142 (426)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEES-------SEEEEEETTTCC
T ss_pred             EEEeCCCCCcceEEeeeecCCCCEEEEeecCC-------CeEEEEcCCccc
Confidence            222222   12345688999999987665332       347777877663

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.59  E-value=6.7e-06  Score=80.33  Aligned_cols=94  Identities=10%  Similarity=-0.030  Sum_probs=59.1

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      ..+++...++.|.++|++++ ...+.+.-..   ........|||||++++......        +.|+++|+.+++.  
T Consensus         9 ~~l~~~~~~~~v~v~D~~t~-~~~~t~~~~~---~~~p~~l~~spDG~~l~v~~~~~--------~~v~~~d~~t~~~--   74 (346)
T d1jmxb_           9 EYMIVTNYPNNLHVVDVASD-TVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNHY--------GDIYGIDLDTCKN--   74 (346)
T ss_dssp             EEEEEEETTTEEEEEETTTT-EEEEEEECSS---CCSSCEEEECTTSSEEEEEETTT--------TEEEEEETTTTEE--
T ss_pred             cEEEEEcCCCEEEEEECCCC-CEEEEEEcCC---CCCcceEEECCCCCEEEEEECCC--------CcEEEEeCccCee--
Confidence            45566667788999999976 2223332210   12234688999999887654322        5799999998862  


Q ss_pred             ceecccCC------CcccceeeCCCCCEEEEEEe
Q 006979          236 PKVLVSGS------DFYAFPRMDPRGERMAWIEW  263 (623)
Q Consensus       236 ~~~l~~~~------~~~~~p~wSPDG~~la~~~~  263 (623)
                      ...+....      .......|||||++|+....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             eeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            22222111      12345679999999877653

>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Acetylcholinesterase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.58  E-value=1.5e-08  Score=109.06  Aligned_cols=115  Identities=20%  Similarity=0.233  Sum_probs=78.8

Q ss_pred             CCCCCEEEEecCCCCCcccC-cCCHHhHHHHcC-ceEEEEECCCCC-CCCc-------hhHHHhhccCCccchHHHHHHH
Q 006979          492 EEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSR-GWAFVDVNYGGS-TGYG-------REFRERLLGRWGIVDVNDCCSC  561 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~-~~~~~~~~~a~~-G~~v~~~d~rGs-~~~g-------~~~~~~~~~~~g~~~~~D~~~~  561 (623)
                      .+++|++|++|||....... ........+++. ..+||.+|||=+ -|+-       .+..+...+++|   +.|++.|
T Consensus       136 ~~~lPV~V~ihGG~f~~Gs~~~~~~~~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN~G---l~Dq~~A  212 (571)
T d1dx4a_         136 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVG---LWDQALA  212 (571)
T ss_dssp             CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHH---HHHHHHH
T ss_pred             CCCCeEEEEEeCCCccCCCCcccccchhhhhhcCCeeEEeecceeccccccccccccccccccCCCCccc---chHHHHH
Confidence            57899999999995322221 112223445544 599999999931 1111       111122233444   8899999


Q ss_pred             HHHHHhCCC---CCCCceEEEEcChHHHHHHHHh-c--CCCceeEEEecccCCC
Q 006979          562 ATFLVGSGK---ADEKRLCITGGSAGGYTTLAAL-A--FRDTFKAGASLYGVSI  609 (623)
Q Consensus       562 ~~~l~~~~~---~d~~rv~i~G~S~GG~~~~~~~-~--~~~~f~a~v~~~g~~d  609 (623)
                      ++|+.++-.   -||+||-|+|+|+||..+..++ .  ...+|+.+|..+|...
T Consensus       213 L~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~  266 (571)
T d1dx4a_         213 IRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN  266 (571)
T ss_dssp             HHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred             HHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence            999998622   5999999999999999998777 3  2468999999988654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=5e-06  Score=79.27  Aligned_cols=200  Identities=13%  Similarity=0.087  Sum_probs=127.7

Q ss_pred             EEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      |....+.||+++...+.|++.+++++  ..+.+....   -....+.+++.-++.|+++....        ..|.+++++
T Consensus        43 ~D~~~~~iywsd~~~~~I~~~~l~g~--~~~~v~~~~---~~~p~~iAvD~~~~~lY~~d~~~--------~~I~~~~~d  109 (263)
T d1npea_          43 FDCVDKVVYWTDISEPSIGRASLHGG--EPTTIIRQD---LGSPEGIALDHLGRTIFWTDSQL--------DRIEVAKMD  109 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEESSSC--CCEEEECTT---CCCEEEEEEETTTTEEEEEETTT--------TEEEEEETT
T ss_pred             EEeCCCEEEEEECCCCeEEEEEcccC--CcEEEEEec---cccccEEEEeccCCeEEEeccCC--------CEEEEEecC
Confidence            44456689999888888999999876  444443220   12334567887788888765422        679999998


Q ss_pred             CCCcccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCcee
Q 006979          230 GQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW  308 (623)
Q Consensus       230 ~g~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  308 (623)
                      +..   .+.+. .+.......+..|...+|+|..+...     ...|+.+++++.+   ...+....-    ..+...+.
T Consensus       110 g~~---~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~-----~~~I~r~~~dG~~---~~~i~~~~~----~~P~glai  174 (263)
T d1npea_         110 GTQ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD-----NPKIETSHMDGTN---RRILAQDNL----GLPNGLTF  174 (263)
T ss_dssp             SCS---CEEEECSSCSSEEEEEEETTTTEEEEEECCSS-----SCEEEEEETTSCC---CEEEECTTC----SCEEEEEE
T ss_pred             Cce---EEEEecccccCCcEEEEecccCcEEEeecCCC-----CcEEEEecCCCCC---ceeeeeecc----cccceEEE
Confidence            876   44454 33334445668999999999875532     4569999998763   233333222    23446677


Q ss_pred             CCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEe
Q 006979          309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD  387 (623)
Q Consensus       309 s~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d  387 (623)
                      ++.++ |||+ +.  +...|.+++.++...+.+....   ..|      ..+.+     +++.|||+..  +...|+++|
T Consensus       175 D~~~~~lYw~-d~--~~~~I~~~~~~g~~~~~v~~~~---~~P------~~lav-----~~~~lYwtd~--~~~~I~~~~  235 (263)
T d1npea_         175 DAFSSQLCWV-DA--GTHRAECLNPAQPGRRKVLEGL---QYP------FAVTS-----YGKNLYYTDW--KTNSVIAMD  235 (263)
T ss_dssp             ETTTTEEEEE-ET--TTTEEEEEETTEEEEEEEEECC---CSE------EEEEE-----ETTEEEEEET--TTTEEEEEE
T ss_pred             eecCcEEEEE-eC--CCCEEEEEECCCCCeEEEECCC---CCc------EEEEE-----ECCEEEEEEC--CCCEEEEEE
Confidence            77766 6654 54  4457889998777666565321   111      12333     5678998874  445699999


Q ss_pred             CCCCceeec
Q 006979          388 DFGHSLSLL  396 (623)
Q Consensus       388 ~~~~~~~~l  396 (623)
                      ..+++...+
T Consensus       236 ~~~g~~~~~  244 (263)
T d1npea_         236 LAISKEMDT  244 (263)
T ss_dssp             TTTTEEEEE
T ss_pred             CCCCccceE
Confidence            987776543

>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Butyryl cholinesterase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=8e-09  Score=110.12  Aligned_cols=126  Identities=15%  Similarity=0.119  Sum_probs=85.0

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-CCHHhHHH-HcCceEEEEECCCC-CCCCchh-HHHhhccC
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYW-TSRGWAFVDVNYGG-STGYGRE-FRERLLGR  549 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-~~~~~~~~-a~~G~~v~~~d~rG-s~~~g~~-~~~~~~~~  549 (623)
                      .|+.-+|.|...      .++.|++|++|||........ .......+ ++.+.+|+.+|||= .-|+-.. -.....++
T Consensus        89 CL~lnI~~P~~~------~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRlg~~Gfl~~~~~~~~~gN  162 (526)
T d1p0ia_          89 CLYLNVWIPAPK------PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPGNPEAPGN  162 (526)
T ss_dssp             CCEEEEEEESSC------CSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTTCTTSCSC
T ss_pred             CCEEEEEeCCCC------CCCCceEEEEECCCcccccCcccccCccccccccceeEEecccccccccccCCCCccccccc
Confidence            577778888752      567899999999954322222 11222333 46799999999993 1111000 00112333


Q ss_pred             CccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhc---CCCceeEEEecccCC
Q 006979          550 WGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVS  608 (623)
Q Consensus       550 ~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~---~~~~f~a~v~~~g~~  608 (623)
                      +   -..|++.|++|+.++-   --||+||-|+|+|+||..+..++.   ...+|+.+|..+|..
T Consensus       163 ~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~  224 (526)
T d1p0ia_         163 M---GLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF  224 (526)
T ss_dssp             H---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred             c---cccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence            3   4899999999998741   269999999999999999987763   246899999887753

>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Bile-salt activated lipase (cholesterol esterase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.55  E-value=5.4e-09  Score=112.79  Aligned_cols=129  Identities=19%  Similarity=0.215  Sum_probs=85.2

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCccc---CcCC----HHhHHHHcC-ceEEEEECCCC-CCCCchhHHH
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILN----LSIQYWTSR-GWAFVDVNYGG-STGYGREFRE  544 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~---~~~~----~~~~~~a~~-G~~v~~~d~rG-s~~~g~~~~~  544 (623)
                      .|+.-+|.|+... +  .++++|++|++|||......   ..+.    .....++.. +.+||.+|||= .-|+-.....
T Consensus        80 CL~LNI~~P~~~~-~--~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~~GFl~~~~~  156 (579)
T d2bcea_          80 CLYLNIWVPQGRK-E--VSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDS  156 (579)
T ss_dssp             CCEEEEEEEECSS-S--CCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSST
T ss_pred             CCEEEEEECCCCC-C--CCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeeccccccccccccccc
Confidence            5777788886421 0  14679999999999532111   1111    123445554 69999999993 1111110011


Q ss_pred             hhccCCccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHh-c--CCCceeEEEecccCC
Q 006979          545 RLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAAL-A--FRDTFKAGASLYGVS  608 (623)
Q Consensus       545 ~~~~~~g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~-~--~~~~f~a~v~~~g~~  608 (623)
                      ...+++|   +.|++.|++|+.++-   --||+||-|+|+|+||..+..++ .  ...+|+.+|+.+|..
T Consensus       157 ~~~gN~G---l~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~  223 (579)
T d2bcea_         157 NLPGNYG---LWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG  223 (579)
T ss_dssp             TCCCCHH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred             CCCccch---hhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence            2234444   889999999998852   26999999999999999998776 3  357999999999853

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.54  E-value=1.7e-06  Score=84.53  Aligned_cols=203  Identities=10%  Similarity=0.030  Sum_probs=116.3

Q ss_pred             cCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcEEE
Q 006979           91 LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYK  169 (623)
Q Consensus        91 ~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l~~  169 (623)
                      ++++.++|+++||+.+...   +  .|++++++  ++...+....    .     .....++++| .+++.....+.+++
T Consensus        30 ~e~iAv~pdG~l~vt~~~~---~--~I~~i~p~--g~~~~~~~~~----~-----~~~gla~~~dG~l~v~~~~~~~~~~   93 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEV---G--EIVSITPD--GNQQIHATVE----G-----KVSGLAFTSNGDLVATGWNADSIPV   93 (302)
T ss_dssp             EEEEEECTTSCEEEEETTT---T--EEEEECTT--CCEEEEEECS----S-----EEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             cCCEEECCCCCEEEEeCCC---C--EEEEEeCC--CCEEEEEcCC----C-----CcceEEEcCCCCeEEEecCCceEEE
Confidence            5678898877898887542   3  48888876  3433332211    0     0223455555 67777666677877


Q ss_pred             EeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-c-------
Q 006979          170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-S-------  241 (623)
Q Consensus       170 ~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~-------  241 (623)
                      +++.+.....+.+...  ......++..++++|+. ++.....        ..+|.++..++.   ..... .       
T Consensus        94 ~~~~~~~~~~~~~~~~--~~~~~~n~i~~~~~g~~-~v~~~~~--------~~i~~~~~~~~~---~~~~~~~~~~~~~~  159 (302)
T d2p4oa1          94 VSLVKSDGTVETLLTL--PDAIFLNGITPLSDTQY-LTADSYR--------GAIWLIDVVQPS---GSIWLEHPMLARSN  159 (302)
T ss_dssp             EEEECTTSCEEEEEEC--TTCSCEEEEEESSSSEE-EEEETTT--------TEEEEEETTTTE---EEEEEECGGGSCSS
T ss_pred             EEecccccceeecccc--CCccccceeEEccCCCE-Eeecccc--------ccceeeeccCCc---ceeEecCCccceee
Confidence            7765431233444332  11234567889999953 3332211        568888888764   22111 1       


Q ss_pred             -CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979          242 -GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       242 -~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~  320 (623)
                       .......-..++|+.++++....       ..+|+.++.++.+...........     .......+++||.+|+....
T Consensus       160 ~~~~~~~~ngi~~~~~~l~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~-----~~pdgia~d~dG~l~va~~~  227 (302)
T d2p4oa1         160 SESVFPAANGLKRFGNFLYVSNTE-------KMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHI  227 (302)
T ss_dssp             TTCCSCSEEEEEEETTEEEEEETT-------TTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCEEEECBT
T ss_pred             ccCcccccccccccCCceeeecCC-------CCeEEeccccccccccccccccCC-----CCCcceEECCCCCEEEEEcC
Confidence             11111112356678888887633       456999998876543333333332     34568999999986654433


Q ss_pred             CCCeeeEEEEecCCCeEE
Q 006979          321 KNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       321 ~~g~~~L~~~d~~~~~~~  338 (623)
                         ..+|++++++++..+
T Consensus       228 ---~~~V~~i~p~G~~~~  242 (302)
T d2p4oa1         228 ---YNSVVRIAPDRSTTI  242 (302)
T ss_dssp             ---TCCEEEECTTCCEEE
T ss_pred             ---CCcEEEECCCCCEEE
Confidence               346999998765433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.51  E-value=3.4e-06  Score=86.46  Aligned_cols=213  Identities=10%  Similarity=0.020  Sum_probs=112.7

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceE
Q 006979          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE  274 (623)
Q Consensus       195 d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~  274 (623)
                      .+.+++|.+.+++|.....       +.+.++|+.+++.  +..+..+ +.....+||||||+||....+        ..
T Consensus        23 ~~~~~~d~~~~~~V~~~~d-------g~v~vwD~~t~~~--~~~l~~g-~~~~~vafSPDGk~l~~~~~d--------~~   84 (426)
T d1hzua2          23 KQLNDLDLPNLFSVTLRDA-------GQIALVDGDSKKI--VKVIDTG-YAVHISRMSASGRYLLVIGRD--------AR   84 (426)
T ss_dssp             SCCSCCCGGGEEEEEETTT-------TEEEEEETTTCSE--EEEEECC-SSEEEEEECTTSCEEEEEETT--------SE
T ss_pred             cccccCCCCeEEEEEEcCC-------CEEEEEECCCCcE--EEEEeCC-CCeeEEEECCCCCEEEEEeCC--------CC
Confidence            3556677776777765422       6799999999873  3445443 335567899999998755422        24


Q ss_pred             EEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc-ccccccccc
Q 006979          275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AEFSRPLWV  353 (623)
Q Consensus       275 L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~-~~~~~~~w~  353 (623)
                      |.++|++++.......+-.+..+.  .....+.|+|||+.++++..  ....+..+|..+++...+.... ..+....+.
T Consensus        85 v~vwd~~t~~~~~~~~i~~~~~~~--~~~~s~~~spDG~~l~v~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  160 (426)
T d1hzua2          85 IDMIDLWAKEPTKVAEIKIGIEAR--SVESSKFKGYEDRYTIAGAY--WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH  160 (426)
T ss_dssp             EEEEETTSSSCEEEEEEECCSEEE--EEEECCSTTCTTTEEEEEEE--ESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             EEEEEccCCceeEEEEEeCCCCCc--ceEEeeeecCCCCEEEEeec--CCCeEEEEcCCccceeEEeeccCCCccceeec
Confidence            888999877431122222221111  33457889999994444443  2234566788777755544321 111122222


Q ss_pred             ccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce---eecccCCcceEee--eecCCEEEEEEecCCCCCeEEE
Q 006979          354 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL---SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAK  428 (623)
Q Consensus       354 ~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~---~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~  428 (623)
                      .+... ..+..++++..+++.....  ..+..++......   ..+..+.. ...+  ++++++++.....   ...+..
T Consensus       161 ~~~~~-~~i~~s~d~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~a~~~---~~~~~~  233 (426)
T d1hzua2         161 PEPRV-AAIIASHEHPEFIVNVKET--GKVLLVNYKDIDNLTVTSIGAAPF-LADGGWDSSHRYFMTAANN---SNKVAV  233 (426)
T ss_dssp             SCCCE-EEEEECSSSSEEEEEETTT--TEEEEEECSSSSSCEEEEEECCSS-EEEEEECTTSCEEEEEETT---CSEEEE
T ss_pred             CCCce-eEEEECCCCCEEEEecCCC--CeEEEEEeccccceeeEEeccCCc-cEeeeECCCCcEEEeeeec---ccceee
Confidence            22111 1111234666666554333  3344444443332   22333222 2223  6666666554432   245667


Q ss_pred             EEcCCCcc
Q 006979          429 VTLDDHKL  436 (623)
Q Consensus       429 ~~l~~~~~  436 (623)
                      ++...++.
T Consensus       234 ~~~~~~~~  241 (426)
T d1hzua2         234 IDSKDRRL  241 (426)
T ss_dssp             EETTTTEE
T ss_pred             eecccccE
Confidence            77777764

>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Acetylcholinesterase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.9e-08  Score=107.59  Aligned_cols=128  Identities=18%  Similarity=0.169  Sum_probs=85.7

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-CCHHhHHH-HcCceEEEEECCCC-CCCCchhHHHhhccCC
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYW-TSRGWAFVDVNYGG-STGYGREFRERLLGRW  550 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-~~~~~~~~-a~~G~~v~~~d~rG-s~~~g~~~~~~~~~~~  550 (623)
                      .|+.-+|.|...     ..+++|++|++|||........ .......+ ++.+.+|+.+|||= .-|+-..  .......
T Consensus        96 CL~LnI~~P~~~-----~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vvvVt~nYRlg~~Gfl~~--~~~~~~~  168 (542)
T d2ha2a1          96 CLYLNVWTPYPR-----PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLAL--PGSREAP  168 (542)
T ss_dssp             CCEEEEEEESSC-----CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCC--TTCSSCC
T ss_pred             CCEEEEEecCCC-----CCCCCcEEEEEEECccccccCcccccCchhhhhhccceeEeeeeeccceeeecc--cccccCC
Confidence            577777888652     1577899999999954222111 11112233 45799999999992 1111000  0011122


Q ss_pred             ccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCC
Q 006979          551 GIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVS  608 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~  608 (623)
                      |..-..|++.|++|+.++-   --||+||-|+|+|+||..+..++..   ..+|+.+|+.+|..
T Consensus       169 gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~  232 (542)
T d2ha2a1         169 GNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP  232 (542)
T ss_dssp             SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred             CcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence            3334789999999998751   2599999999999999999988733   36999999998853

>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Acetylcholinesterase-like
domain: Acetylcholinesterase
species: Pacific electric ray (Torpedo californica) [TaxId: 7787]

Probab=98.50  E-value=2e-08  Score=107.04  Aligned_cols=127  Identities=20%  Similarity=0.161  Sum_probs=86.6

Q ss_pred             EEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC--CHHhHHHHcCceEEEEECCCC-CCCCchhHHHhhccCC
Q 006979          474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL--NLSIQYWTSRGWAFVDVNYGG-STGYGREFRERLLGRW  550 (623)
Q Consensus       474 ~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~--~~~~~~~a~~G~~v~~~d~rG-s~~~g~~~~~~~~~~~  550 (623)
                      .|+.-+|.|++.      .+++|++|++|||.........  .......++++.+|+.+|||= .-|+-..  .......
T Consensus        91 CL~LnI~~P~~~------~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vvvVt~nYRlg~~GFl~~--~~~~~~~  162 (532)
T d1ea5a_          91 CLYLNIWVPSPR------PKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLAL--HGSQEAP  162 (532)
T ss_dssp             CCEEEEEECSSC------CSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCC--TTCSSSC
T ss_pred             CCEEEEEeCCCC------CCCCcEEEEEEcCCcccccCCccccCcchhhcccCccEEEEeecccccccccc--ccccCCC
Confidence            577778888752      5678999999999532222111  112334567899999999993 1111000  0011122


Q ss_pred             ccchHHHHHHHHHHHHhCC---CCCCCceEEEEcChHHHHHHHHhcC---CCceeEEEecccCC
Q 006979          551 GIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVS  608 (623)
Q Consensus       551 g~~~~~D~~~~~~~l~~~~---~~d~~rv~i~G~S~GG~~~~~~~~~---~~~f~a~v~~~g~~  608 (623)
                      |..-+.|++.|++|+.++-   --||+||-|+|+|+||..+..++..   ..+|+.+|+.+|..
T Consensus       163 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~  226 (532)
T d1ea5a_         163 GNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP  226 (532)
T ss_dssp             SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred             CcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence            3334899999999998851   2699999999999999999888733   46899999988764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.1e-05  Score=72.84  Aligned_cols=232  Identities=10%  Similarity=0.015  Sum_probs=137.5

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-cc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QE  235 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~-~~  235 (623)
                      |+|+.  ...|..+++++.  ....+...    ........+++..++|+++....        ..|++.++++... ..
T Consensus         4 Ll~s~--~~~I~~~~l~~~--~~~~~~~~----~~~~~~id~d~~~~~lYw~D~~~--------~~I~~~~l~~~~~~~~   67 (266)
T d1ijqa1           4 LFFTN--RHEVRKMTLDRS--EYTSLIPN----LRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVSS   67 (266)
T ss_dssp             EEEEC--BSSEEEEETTSC--CCEEEECS----CSSEEEEEEETTTTEEEEEETTT--------TEEEEEEC--------
T ss_pred             EEEEC--CCeEEEEECCCC--cceeeeCC----CCceEEEEEEeCCCEEEEEECCC--------CEEEEEEecCCCCCcc
Confidence            56764  345999999876  55555443    22234566889999998864322        5688888875321 00


Q ss_pred             c-eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcE
Q 006979          236 P-KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL  314 (623)
Q Consensus       236 ~-~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l  314 (623)
                      . ..+..+.....+.+..+-++.|||....       ...|.++++++..   ...++....    ..+......|...+
T Consensus        68 ~~~~~~~~~~~p~glAvD~~~~~lY~~d~~-------~~~I~v~~~~g~~---~~~~~~~~~----~~P~~l~vd~~~g~  133 (266)
T d1ijqa1          68 YDTVISRDIQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVK---RKTLFRENG----SKPRAIVVDPVHGF  133 (266)
T ss_dssp             CEEEECSSCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETTSSS---EEEEEECTT----CCEEEEEEETTTTE
T ss_pred             eEEEEeCCCCCcceEEEeeccceEEEEecC-------CCEEEeEecCCce---EEEEEcCCC----CCcceEEEEcccCe
Confidence            2 2233333334456677778999998532       3469999998763   233333322    23445666665444


Q ss_pred             EEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee
Q 006979          315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS  394 (623)
Q Consensus       315 ~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~  394 (623)
                      +|.++. .....|++.++++...+.+..+.  +..|      ..+.+-   +.++.|||+.  .+...|.++++++...+
T Consensus       134 ly~~~~-~~~~~I~r~~~dGs~~~~l~~~~--~~~p------~gl~iD---~~~~~lYw~d--~~~~~I~~~~~dG~~~~  199 (266)
T d1ijqa1         134 MYWTDW-GTPAKIKKGGLNGVDIYSLVTEN--IQWP------NGITLD---LLSGRLYWVD--SKLHSISSIDVNGGNRK  199 (266)
T ss_dssp             EEEEEC-SSSCEEEEEETTSCCEEEEECSS--CSCE------EEEEEE---TTTTEEEEEE--TTTTEEEEEETTSCSCE
T ss_pred             EEEecc-CCCcceeEeccCCCceecccccc--ccee------eEEEee---ccccEEEEec--CCcCEEEEEECCCCCEE
Confidence            444454 23457999999887777666432  1111      123332   2678899985  44557999999887766


Q ss_pred             ecccCCc---ceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          395 LLDIPFT---DIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       395 ~lt~~~~---~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      .+.....   .-..+...++.+|++-.   ....|++++..+++
T Consensus       200 ~~~~~~~~~~~p~~lav~~~~ly~td~---~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         200 TILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS  240 (266)
T ss_dssp             EEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred             EEEeCCCcccccEEEEEECCEEEEEEC---CCCeEEEEECCCCc
Confidence            5543322   12245667888888643   23589999887765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.48  E-value=1.3e-05  Score=80.04  Aligned_cols=158  Identities=12%  Similarity=0.047  Sum_probs=89.8

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.++++| ..+++...++.|.++++.++  ....+..-.+. ........|+|+|++|+....|         ..+.+
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~--~~~~~~~l~gH-~~~V~~l~fsp~~~~l~s~s~D---------~~i~v   77 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGN--KWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD---------RNAYV   77 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETT--EEEEEEEEECC-SSCEEEEEEETTTTEEEEEETT---------SCEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCC--CEEEEEEecCC-CCCEEEEEECCCCCEEEEEECC---------CeEEE
Confidence            556777766 45555556778889988765  33222210000 2235678899999988765543         34777


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEE-EcCCCCCccccCc
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFDPTIVESPT  304 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~  304 (623)
                      .|+.++.......+......+....|+|||++|+....+.      .  |.+.+++.......... .....    ..+.
T Consensus        78 Wd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~------~--i~i~~~~~~~~~~~~~~~~~~~~----~~v~  145 (371)
T d1k8kc_          78 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR------V--ISICYFEQENDWWVCKHIKKPIR----STVL  145 (371)
T ss_dssp             EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS------S--EEEEEEETTTTEEEEEEECTTCC----SCEE
T ss_pred             EeecccccccccccccccccccccccccccccceeecccC------c--ceeeeeecccccccccccccccc----cccc
Confidence            7887765211222233334455678999999988776332      2  55555554432111111 11222    3456


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEE
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHK  329 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~  329 (623)
                      ...|+|||++++.... ++.-++|.
T Consensus       146 ~v~~~p~~~~l~s~s~-D~~v~v~~  169 (371)
T d1k8kc_         146 SLDWHPNSVLLAAGSC-DFKCRIFS  169 (371)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEE
T ss_pred             cccccccccceecccc-CcEEEEEe
Confidence            7899999995554444 46555553

>d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Epoxide hydrolase
domain: Bacterial epoxide hydrolase
species: Aspergillus niger [TaxId: 5061]

Probab=98.48  E-value=4.2e-07  Score=92.66  Aligned_cols=118  Identities=16%  Similarity=-0.058  Sum_probs=82.4

Q ss_pred             CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcCCHHhHHHHcCc------eEEEEECCCCCCCCchhHHH
Q 006979          471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG------WAFVDVNYGGSTGYGREFRE  544 (623)
Q Consensus       471 dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G------~~v~~~d~rGs~~~g~~~~~  544 (623)
                      +|..||..-....        ++..|.||++||.|.+..  .|...+..|++.|      |.|++||.||.|.+.+.   
T Consensus        90 ~G~~iHf~h~~~~--------~~~~~pLlLlHG~P~s~~--~w~~vi~~La~~g~~~~~~f~VIaPDLpG~G~S~~P---  156 (394)
T d1qo7a_          90 EGLTIHFAALFSE--------REDAVPIALLHGWPGSFV--EFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGP---  156 (394)
T ss_dssp             TTEEEEEEEECCS--------CTTCEEEEEECCSSCCGG--GGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCC---
T ss_pred             CCEEEEEEEEecc--------CCCCCEEEEeccccccHH--HHHHHHHhhccccCCcccceeeecccccccCCCCCC---
Confidence            7999995444433        334567888999976544  6778899999988      99999999996654331   


Q ss_pred             hhccCCccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEeccc
Q 006979          545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYG  606 (623)
Q Consensus       545 ~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g  606 (623)
                         .........++...+..|.+.-  ..++..+.|+|+||.++..++ .+++.+++++....
T Consensus       157 ---~~~~~y~~~~~a~~~~~l~~~l--g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~  214 (394)
T d1qo7a_         157 ---PLDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLC  214 (394)
T ss_dssp             ---CSSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred             ---CCCCccCHHHHHHHHHHHHhhc--cCcceEEEEecCchhHHHHHHHHhhccccceeEeee
Confidence               1111233555555555555441  236888999999999999888 77888877776543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.47  E-value=1.2e-05  Score=78.78  Aligned_cols=243  Identities=11%  Similarity=0.065  Sum_probs=129.9

Q ss_pred             EEEeCC-EEEEEeCC-------CCcEEEEeCCCCCCCceecCCCC-CCCCeeecceeeCCCCCEEEEEEeccCCCCCCce
Q 006979          150 FRIFGD-TVIFSNYK-------DQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNST  220 (623)
Q Consensus       150 ~~~s~d-~l~f~~~~-------~~~l~~~d~~~g~~~~~~Lt~~~-~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~  220 (623)
                      .+++++ .+||+...       .++|+++|++++  ....+.... .....+-....++|+|+.|++... .        
T Consensus        23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~--~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-~--------   91 (314)
T d1pjxa_          23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG--KKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R--------   91 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTC--CEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T--------
T ss_pred             eEEeCCCCEEEEECccccccccCCEEEEEECCCC--cEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-C--------
Confidence            445544 67776533       357999999876  444333210 000112345779999987665422 1        


Q ss_pred             eEEEEEEcCCCCcccceecccC---CC--cccceeeCCCCCEEEEEEecCCCCC--------CCceEEEEEEecCCCcee
Q 006979          221 TEIVAIALNGQNIQEPKVLVSG---SD--FYAFPRMDPRGERMAWIEWHHPNMP--------WDKAELWVGYISENGDVY  287 (623)
Q Consensus       221 ~~L~~idl~~g~~~~~~~l~~~---~~--~~~~p~wSPDG~~la~~~~~~~~~p--------~~~~~L~v~d~~~~~~~~  287 (623)
                      ..|++++.+++.   ...+...   ..  ..+...+.|||+ |++........+        -....||+++.++.    
T Consensus        92 ~~i~~~~~~g~~---~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~----  163 (314)
T d1pjxa_          92 LGLLVVQTDGTF---EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ----  163 (314)
T ss_dssp             TEEEEEETTSCE---EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC----
T ss_pred             CeEEEEeCCCcE---EEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecCc----
Confidence            458999998775   2323221   11  134467999996 766642211000        12356888776543    


Q ss_pred             eeEEEcCCCCCccccCcCceeCCCCc----EEEEEeCCCCeeeEEEEecCC-CeE--EEEe-ecc-cccccccccccCcc
Q 006979          288 KRVCVAGFDPTIVESPTEPKWSSKGE----LFFVTDRKNGFWNLHKWIESN-NEV--LAIY-SLD-AEFSRPLWVFGINS  358 (623)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~ws~DG~----l~~~~~~~~g~~~L~~~d~~~-~~~--~~l~-~~~-~~~~~~~w~~~~~~  358 (623)
                      ...+..+.     .......|++|+.    .+|+++.  ...+|+++|.+. +..  +++. ... ....      ..+.
T Consensus       164 ~~~~~~~~-----~~pNGi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~------~pdG  230 (314)
T d1pjxa_         164 MIQVDTAF-----QFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEG------GADG  230 (314)
T ss_dssp             EEEEEEEE-----SSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSC------EEEE
T ss_pred             eeEeeCCc-----ceeeeeEECCCCCcceeEEEEEee--cccceEEeeccCccccceeeEEEEccccccc------ccee
Confidence            22333221     2334678888753    4666665  456788877543 222  1221 110 0111      1123


Q ss_pred             eeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-ecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCC
Q 006979          359 YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDD  433 (623)
Q Consensus       359 ~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~  433 (623)
                      +.+-    .++.||++..  +..+|+++|+++++.. .+..+......+  .++++++|++.+.   ...||++++..
T Consensus       231 iavD----~~GnlyVa~~--~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~---~g~i~~~~~~~  299 (314)
T d1pjxa_         231 MDFD----EDNNLLVANW--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQR  299 (314)
T ss_dssp             EEEB----TTCCEEEEEE--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEECSS
T ss_pred             eEEe----cCCcEEEEEc--CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC---CCcEEEEECCC
Confidence            4443    3345666543  3457899999987653 455554333333  5566677765432   35788888654

>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase/thioesterase 1
domain: Uncharacterized protein Atu2452
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.46  E-value=4.7e-08  Score=89.80  Aligned_cols=112  Identities=15%  Similarity=0.003  Sum_probs=71.8

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCC-CchhHHHhhccCCccchHHHHHHHHHHHHh---
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG-YGREFRERLLGRWGIVDVNDCCSCATFLVG---  567 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~-~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~---  567 (623)
                      .++.|+||++||++.  ....+....+.++ .++.|+.++.+...+ +...+   .....+..+.+|+...++.+..   
T Consensus        14 ~~~~P~vi~lHG~G~--~~~~~~~~~~~l~-~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~   87 (203)
T d2r8ba1          14 VAGAPLFVLLHGTGG--DENQFFDFGARLL-PQATILSPVGDVSEHGAARFF---RRTGEGVYDMVDLERATGKMADFIK   87 (203)
T ss_dssp             CTTSCEEEEECCTTC--CHHHHHHHHHHHS-TTSEEEEECCSEEETTEEESS---CBCGGGCBCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCC--CHHHHHHHHHHhc-cCCeEEEeccccccccccccc---cccCccccchhHHHHHHHHHHHHHH
Confidence            455799999999743  2234444555554 467788886553221 11111   1112233344454444443322   


Q ss_pred             --CCCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCCC
Q 006979          568 --SGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVSI  609 (623)
Q Consensus       568 --~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~d  609 (623)
                        ...+|+++|+++|+|+||.+++.++ .+|+.+.++++.+|...
T Consensus        88 ~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~  132 (203)
T d2r8ba1          88 ANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIP  132 (203)
T ss_dssp             HHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCC
T ss_pred             HhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccc
Confidence              1236889999999999999999999 88999999999999754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.41  E-value=4.4e-06  Score=82.46  Aligned_cols=133  Identities=9%  Similarity=-0.055  Sum_probs=76.9

Q ss_pred             eCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC--CceEE
Q 006979          198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAEL  275 (623)
Q Consensus       198 ~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~--~~~~L  275 (623)
                      .+|||+++++....+..    ...++|++|.++++.  +..+..+.  ...++|||||++|++.........+  ....|
T Consensus         9 ~spdg~~~~v~~~~~~~----~~~~v~v~D~~tg~~--~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFA----AVTQQFVIDGEAGRV--IGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCCCTTEEEEEECGGGC----SSEEEEEEETTTTEE--EEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eCCCCCEEEEEecccCC----CcCeEEEEECCCCcE--EEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            58999998655433322    237899999999872  23333332  2358999999999887532211100  12458


Q ss_pred             EEEEecCCCceeeeEEEcCCCCCcc-ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEE
Q 006979          276 WVGYISENGDVYKRVCVAGFDPTIV-ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI  340 (623)
Q Consensus       276 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l  340 (623)
                      .++|+.++..+... ........+. .......|++||+.+++.+. .....+..++..+++....
T Consensus        81 ~v~D~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~~~~~~~~  144 (355)
T d2bbkh_          81 EVFDPVTLLPTADI-ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKAFKRM  144 (355)
T ss_dssp             EEECTTTCCEEEEE-EETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCEEEEE-ecCCcceeecCCCCceEEEecCCCeeEEecC-CCCceeeeeecCCCcEeeE
Confidence            88898876431111 1111110100 12346789999994445554 3445677778888765443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.6e-05  Score=73.27  Aligned_cols=199  Identities=13%  Similarity=0.092  Sum_probs=121.4

Q ss_pred             EEEeCCEEEEEeCCCCcEEEEeCCCCC--CCce-ecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          150 FRIFGDTVIFSNYKDQRLYKHSIDSKD--SSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       150 ~~~s~d~l~f~~~~~~~l~~~d~~~g~--~~~~-~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      |....+.|||++...+.|++.++++..  ...+ .+...    .....+.++++.++.|+++....        ..|.+.
T Consensus        37 ~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~----~~~p~glAvD~~~~~lY~~d~~~--------~~I~v~  104 (266)
T d1ijqa1          37 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGLAVDWIHSNIYWTDSVL--------GTVSVA  104 (266)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC--------CEEEECSS----CSCCCEEEEETTTTEEEEEETTT--------TEEEEE
T ss_pred             EEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC----CCCcceEEEeeccceEEEEecCC--------CEEEeE
Confidence            334456899998888889999886420  1122 23322    12334577888888888864422        579999


Q ss_pred             EcCCCCcccceec-ccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          227 ALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       227 dl~~g~~~~~~~l-~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      ++++..   .+.+ ..+.......+..|...+|+|..+..      ...|+.+++++..   ...+....-    ..+..
T Consensus       105 ~~~g~~---~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~------~~~I~r~~~dGs~---~~~l~~~~~----~~p~g  168 (266)
T d1ijqa1         105 DTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNGVD---IYSLVTENI----QWPNG  168 (266)
T ss_dssp             ETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSS------SCEEEEEETTSCC---EEEEECSSC----SCEEE
T ss_pred             ecCCce---EEEEEcCCCCCcceEEEEcccCeEEEeccCC------CcceeEeccCCCc---eeccccccc----ceeeE
Confidence            998876   4443 33334445567889888999987543      3569999998763   233333222    34567


Q ss_pred             ceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEE
Q 006979          306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG  384 (623)
Q Consensus       306 ~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~  384 (623)
                      ..+.+.++ |||. +.  +...|.++++++...+.+.........|      ..+.+     +++.|||+..  +...|+
T Consensus       169 l~iD~~~~~lYw~-d~--~~~~I~~~~~dG~~~~~~~~~~~~~~~p------~~lav-----~~~~ly~td~--~~~~I~  232 (266)
T d1ijqa1         169 ITLDLLSGRLYWV-DS--KLHSISSIDVNGGNRKTILEDEKRLAHP------FSLAV-----FEDKVFWTDI--INEAIF  232 (266)
T ss_dssp             EEEETTTTEEEEE-ET--TTTEEEEEETTSCSCEEEEECTTTTSSE------EEEEE-----ETTEEEEEET--TTTEEE
T ss_pred             EEeeccccEEEEe-cC--CcCEEEEEECCCCCEEEEEeCCCccccc------EEEEE-----ECCEEEEEEC--CCCeEE
Confidence            78888777 6665 44  3457899999876655554332222111      12333     5678888763  345788


Q ss_pred             EEeCCCCc
Q 006979          385 ILDDFGHS  392 (623)
Q Consensus       385 ~~d~~~~~  392 (623)
                      +++..+++
T Consensus       233 ~~~~~~g~  240 (266)
T d1ijqa1         233 SANRLTGS  240 (266)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCc
Confidence            88876654

>d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Carboxylesterase/thioesterase 1
domain: Carboxylesterase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.39  E-value=2.5e-07  Score=86.01  Aligned_cols=114  Identities=12%  Similarity=0.018  Sum_probs=66.8

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHcC--ceEEEEECCCC------CCCCchhHHHhhcc-CCccchHHHHHH---
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGG------STGYGREFRERLLG-RWGIVDVNDCCS---  560 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~--G~~v~~~d~rG------s~~~g~~~~~~~~~-~~g~~~~~D~~~---  560 (623)
                      ...|+||++||.  +.....+...++.+...  ++.++.++-+.      .+..+..|...... .....+.+++.+   
T Consensus        12 ~~~~~Vi~lHG~--G~~~~~~~~~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~   89 (218)
T d1auoa_          12 PADACVIWLHGL--GADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAK   89 (218)
T ss_dssp             CCSEEEEEECCT--TCCTTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHH
T ss_pred             CCCeEEEEEcCC--CCChhhHHHHHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHHH
Confidence            446799999997  33444566667777654  56666665321      00011112111111 111222333333   


Q ss_pred             HHHHHHh---CCCCCCCceEEEEcChHHHHHHHHh-c-CCCceeEEEecccCC
Q 006979          561 CATFLVG---SGKADEKRLCITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVS  608 (623)
Q Consensus       561 ~~~~l~~---~~~~d~~rv~i~G~S~GG~~~~~~~-~-~~~~f~a~v~~~g~~  608 (623)
                      .++.+++   +..+|++||+++|+|+||++++.++ . .+..|+++|+.+|..
T Consensus        90 ~v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~  142 (218)
T d1auoa_          90 MVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYA  142 (218)
T ss_dssp             HHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCC
T ss_pred             HHHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccC
Confidence            2333322   3358999999999999999998765 4 467899999999854

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.39  E-value=7e-05  Score=74.15  Aligned_cols=147  Identities=8%  Similarity=-0.057  Sum_probs=83.5

Q ss_pred             CcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCC-CCCceeEEEEEEcCCCCcccceecccCC
Q 006979          165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-ALNSTTEIVAIALNGQNIQEPKVLVSGS  243 (623)
Q Consensus       165 ~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~-~~~~~~~L~~idl~~g~~~~~~~l~~~~  243 (623)
                      ++||++|.+++ .....+..+      ....+.|||||++|++........ .....+.+.++|+.+++.  ...+....
T Consensus        47 ~~v~v~D~~tg-~~~~~~~~~------~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~--~~~~~~~~  117 (373)
T d2madh_          47 IQQWVLDAGSG-SILGHVNGG------FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--IADIELPD  117 (373)
T ss_pred             ceEEEEECCCC-CEEEEEeCC------CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcE--EEEEecCC
Confidence            46999999887 233344332      122578999999998876543211 112346789999998872  11221111


Q ss_pred             --C-----cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEE
Q 006979          244 --D-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (623)
Q Consensus       244 --~-----~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~  316 (623)
                        .     ......|||||+++++..++..      ..+.+.+.....   .....        .......++|+|+.+|
T Consensus       118 ~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~------~~~~~~~~~~~~---~~~~~--------~~~~~~~~s~~g~~~~  180 (373)
T d2madh_         118 APRFDVGPYSWMNANTPNNADLLFFQFAAG------PAVGLVVQGGSS---DDQLL--------SSPTCYHIHPGAPSTF  180 (373)
T ss_pred             cceeEeccCCCcEEEEeCCCcEEEEEEcCC------CceEEeeccCCe---EEEEe--------ccceeEEEecCCCcEE
Confidence              1     1234579999999887765532      234555554431   11111        1223567899999444


Q ss_pred             EEeCCCCeeeEEEEecCCCeEEE
Q 006979          317 VTDRKNGFWNLHKWIESNNEVLA  339 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~~~~~~  339 (623)
                      ++...++  .+..++..+++...
T Consensus       181 v~~~~dg--~~~~~~~~~~~~~~  201 (373)
T d2madh_         181 YLLCAQG--GLAKTDHAGGAAGA  201 (373)
T ss_pred             EEEcCCC--eEEEEEcCCceeeE
Confidence            4444234  46666766665443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.38  E-value=1.1e-05  Score=80.79  Aligned_cols=121  Identities=8%  Similarity=0.078  Sum_probs=76.1

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCc
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK  272 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~  272 (623)
                      ....+|||||++|+....+         ..|.++|+++++......+....+.+....|||||++|+-...|.       
T Consensus        10 It~~~~s~dg~~la~~~~~---------~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~-------   73 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNN---------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR-------   73 (371)
T ss_dssp             CCEEEECTTSSEEEEECSS---------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS-------
T ss_pred             eEEEEECCCCCEEEEEeCC---------CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCC-------
Confidence            3457899999998775443         457888888775222333433344566788999999988665332       


Q ss_pred             eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCe
Q 006979          273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE  336 (623)
Q Consensus       273 ~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~  336 (623)
                       .|++.++.++.. .....+.+..    ..+....|+|||+.++.... ++.-.+|.++.....
T Consensus        74 -~i~vWd~~~~~~-~~~~~~~~~~----~~v~~i~~~p~~~~l~~~s~-d~~i~i~~~~~~~~~  130 (371)
T d1k8kc_          74 -NAYVWTLKGRTW-KPTLVILRIN----RAARCVRWAPNEKKFAVGSG-SRVISICYFEQENDW  130 (371)
T ss_dssp             -CEEEEEEETTEE-EEEEECCCCS----SCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTTE
T ss_pred             -eEEEEeeccccc-cccccccccc----ccccccccccccccceeecc-cCcceeeeeeccccc
Confidence             277778876521 1122223333    45677899999995544444 466677777654443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.37  E-value=3.3e-05  Score=73.95  Aligned_cols=200  Identities=10%  Similarity=-0.012  Sum_probs=105.7

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEE
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY  168 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~  168 (623)
                      ..+..+.++|++.+...-.   ++|...+|....+   +....++..       |...+.+..++++.-+++...++.+.
T Consensus        13 ~~V~~l~~s~dg~~l~s~s---~Dg~v~vWd~~~~---~~~~~~~~~-------h~~~v~~v~~~~~g~~~~~~~d~~v~   79 (299)
T d1nr0a2          13 KAITALSSSADGKTLFSAD---AEGHINSWDISTG---ISNRVFPDV-------HATMITGIKTTSKGDLFTVSWDDHLK   79 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEE---TTSCEEEEETTTC---CEEECSSCS-------CSSCEEEEEECTTSCEEEEETTTEEE
T ss_pred             CCcEEEEECCCCCEEEEEc---CCCeEEEEECCCC---cEEEEEcCC-------CCCcEEEEEeeccceeecccceeeEE
Confidence            4466788998333333332   3577777765432   333333322       12223455666663233444567788


Q ss_pred             EEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccc
Q 006979          169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF  248 (623)
Q Consensus       169 ~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~  248 (623)
                      +++....  ....................++|+|+.++....          ..+.+++..  +   ...+..... ...
T Consensus        80 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~----------~~i~~~~~~--~---~~~~~~~~~-~~~  141 (299)
T d1nr0a2          80 VVPAGGS--GVDSSKAVANKLSSQPLGLAVSADGDIAVAACY----------KHIAIYSHG--K---LTEVPISYN-SSC  141 (299)
T ss_dssp             EECSSSS--SSCTTSCCEEECSSCEEEEEECTTSSCEEEEES----------SEEEEEETT--E---EEEEECSSC-EEE
T ss_pred             EeccCCc--ccccccccccccccccccccccccccccccccc----------ccccccccc--c---ccccccccc-ccc
Confidence            8887643  211111100000122345779999987766543          335555532  2   222222221 234


Q ss_pred             eeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979          249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH  328 (623)
Q Consensus       249 p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~  328 (623)
                      ..|+|||+.|+....+        ..|.++|+.++.. .... .....    ..+....|+|++++++.... ++  .+.
T Consensus       142 ~~~s~~~~~l~~g~~d--------g~i~~~d~~~~~~-~~~~-~~~~~----~~i~~~~~~~~~~~l~~~~~-d~--~i~  204 (299)
T d1nr0a2         142 VALSNDKQFVAVGGQD--------SKVHVYKLSGASV-SEVK-TIVHP----AEITSVAFSNNGAFLVATDQ-SR--KVI  204 (299)
T ss_dssp             EEECTTSCEEEEEETT--------SEEEEEEEETTEE-EEEE-EEECS----SCEEEEEECTTSSEEEEEET-TS--CEE
T ss_pred             cccccccccccccccc--------ccccccccccccc-cccc-ccccc----cccccccccccccccccccc-cc--ccc
Confidence            6799999988765522        3588889876621 1111 22222    35667899999985555554 34  456


Q ss_pred             EEecCCCe
Q 006979          329 KWIESNNE  336 (623)
Q Consensus       329 ~~d~~~~~  336 (623)
                      .+|..++.
T Consensus       205 ~~~~~~~~  212 (299)
T d1nr0a2         205 PYSVANNF  212 (299)
T ss_dssp             EEEGGGTT
T ss_pred             cccccccc
Confidence            66765554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=3.8e-05  Score=72.93  Aligned_cols=236  Identities=11%  Similarity=0.037  Sum_probs=138.6

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCC--CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI  233 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~--~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~  233 (623)
                      .|+|+.  .+.|.++++++.  ....+...  ...+........+++..++|+++....        ..|++++++++. 
T Consensus         3 fLl~s~--~~~I~~~~ld~~--~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~--------~~I~~~~l~g~~-   69 (263)
T d1npea_           3 HLLFAQ--TGKIERLPLERN--TMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE--------PSIGRASLHGGE-   69 (263)
T ss_dssp             EEEEEE--EEEEEEEEESSS--CBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT--------TEEEEEESSSCC-
T ss_pred             EEEEeC--CCeEEEEECCCc--cccccccccccccCCCcEEEEEEEeCCCEEEEEECCC--------CeEEEEEcccCC-
Confidence            366774  346999988754  22221110  000011223456788888888764332        679999999876 


Q ss_pred             ccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCC
Q 006979          234 QEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG  312 (623)
Q Consensus       234 ~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG  312 (623)
                        .+.+. .+.....+.+...-++.|||....       ...|.++++++..   ...+.....    ..+......|..
T Consensus        70 --~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~-------~~~I~~~~~dg~~---~~~l~~~~l----~~p~~l~vdp~~  133 (263)
T d1npea_          70 --PTTIIRQDLGSPEGIALDHLGRTIFWTDSQ-------LDRIEVAKMDGTQ---RRVLFDTGL----VNPRGIVTDPVR  133 (263)
T ss_dssp             --CEEEECTTCCCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCS---CEEEECSSC----SSEEEEEEETTT
T ss_pred             --cEEEEEeccccccEEEEeccCCeEEEeccC-------CCEEEEEecCCce---EEEEecccc----cCCcEEEEeccc
Confidence              44443 332333344565568889998632       3468999988763   223333322    234566677765


Q ss_pred             cEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCc
Q 006979          313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS  392 (623)
Q Consensus       313 ~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~  392 (623)
                      .++|.++...+...|++.++++...+.+....  +..|      ..+.+-   +.++.|||+.  .+...|.+++++++.
T Consensus       134 g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~--~~~P------~glaiD---~~~~~lYw~d--~~~~~I~~~~~~g~~  200 (263)
T d1npea_         134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDN--LGLP------NGLTFD---AFSSQLCWVD--AGTHRAECLNPAQPG  200 (263)
T ss_dssp             TEEEEEECCSSSCEEEEEETTSCCCEEEECTT--CSCE------EEEEEE---TTTTEEEEEE--TTTTEEEEEETTEEE
T ss_pred             CcEEEeecCCCCcEEEEecCCCCCceeeeeec--cccc------ceEEEe---ecCcEEEEEe--CCCCEEEEEECCCCC
Confidence            54444554244557999999887666665331  1222      122332   2678899875  455678899998877


Q ss_pred             eeecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCcc
Q 006979          393 LSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       393 ~~~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~  436 (623)
                      .+.+..+...-.++...++++|++-..   ...|++++..+++.
T Consensus       201 ~~~v~~~~~~P~~lav~~~~lYwtd~~---~~~I~~~~~~~g~~  241 (263)
T d1npea_         201 RRKVLEGLQYPFAVTSYGKNLYYTDWK---TNSVIAMDLAISKE  241 (263)
T ss_dssp             EEEEEECCCSEEEEEEETTEEEEEETT---TTEEEEEETTTTEE
T ss_pred             eEEEECCCCCcEEEEEECCEEEEEECC---CCEEEEEECCCCcc
Confidence            765544322223455668888877532   34799999887763

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.31  E-value=6.7e-05  Score=76.68  Aligned_cols=223  Identities=11%  Similarity=0.038  Sum_probs=125.4

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCC-
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP-  269 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p-  269 (623)
                      ......++||||++++|.....+.+    ...|+++|+++|+... ..+. +. ....+.|++|++.|+|+..+.+... 
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e----~~~l~v~Dl~tg~~~~-~~i~-~~-~~~~~~W~~D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSD----WVTIKFMKVDGAKELP-DVLE-RV-KFSCMAWTHDGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCS----CEEEEEEETTTTEEEE-EEEE-EE-CSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             ceecceEecCCCCEEEEEeccccCc----hheeEEeccCcceecc-cccc-cc-cccceEEcCCCCEEEEEEeccccCcc
Confidence            3445678999999999987655432    3889999999997210 1121 11 1246889999999999987654211 


Q ss_pred             -------CCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeC-CCCeeeEEEEecCCCe----
Q 006979          270 -------WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR-KNGFWNLHKWIESNNE----  336 (623)
Q Consensus       270 -------~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~-~~g~~~L~~~d~~~~~----  336 (623)
                             +...++|+..+.+... ....+..+.+..  ........+.||+ +++.... ......++..|.....    
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~-~d~~v~~e~d~~--~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~  274 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQS-EDILCAEFPDEP--KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGG-GCEEEECCTTCT--TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             cccccccCCcceEEEEECCCCcc-ccccccccccCC--ceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence                   1234688887766522 123344433311  2233456688998 4433332 1234567777754321    


Q ss_pred             ----EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC-eEEEEEEeCCCCc---eeecc-cCCcce--Ee
Q 006979          337 ----VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDDFGHS---LSLLD-IPFTDI--DN  405 (623)
Q Consensus       337 ----~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g-~~~L~~~d~~~~~---~~~lt-~~~~~v--~~  405 (623)
                          ...+....           ...+.++.  ..++.+|+.++.++ ..+|+.++++...   ++.+- .....+  ..
T Consensus       275 ~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~  341 (430)
T d1qfma1         275 GILKWVKLIDNF-----------EGEYDYVT--NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV  341 (430)
T ss_dssp             SSCCCEEEECSS-----------SSCEEEEE--EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred             cccceeEeeccc-----------ccceEEEe--cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence                11222110           00111110  05667777776554 4679999887543   34332 233332  22


Q ss_pred             eeecCCEEEEEEecCCCCCeEEEEEcCCCcce
Q 006979          406 ITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK  437 (623)
Q Consensus       406 ~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~~~  437 (623)
                      +...++.+++.... ...++|+++++++++..
T Consensus       342 ~~~~~~~lvl~~~~-~~~~~l~v~~~~~~~~~  372 (430)
T d1qfma1         342 ACVRSNFLVLCYLH-DVKNTLQLHDLATGALL  372 (430)
T ss_dssp             EEETTTEEEEEEEE-TTEEEEEEEETTTCCEE
T ss_pred             EEEECCEEEEEEEc-CCEeEEEEEECCCCcEE
Confidence            35556776665543 34567899999888643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.27  E-value=2.6e-05  Score=75.61  Aligned_cols=110  Identities=9%  Similarity=-0.016  Sum_probs=67.0

Q ss_pred             ceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCC---CCCcee
Q 006979          148 GAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQD---ALNSTT  221 (623)
Q Consensus       148 ~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~---~~~~~~  221 (623)
                      ..+++++|  .++++...++.|+++|+.++ .....+... ............++|||++++.........   ......
T Consensus        37 ~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T d1pbyb_          37 MVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred             cEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccccc
Confidence            45667766  45566667788999999987 222333322 001112345678999999988776543211   011235


Q ss_pred             EEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEE
Q 006979          222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWI  261 (623)
Q Consensus       222 ~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~  261 (623)
                      .+.++|..+++   ...............|||||++++..
T Consensus       116 ~~~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~  152 (337)
T d1pbyb_         116 RVALYDAETLS---RRKAFEAPRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             EEEEEETTTTE---EEEEEECCSSCCCEEECTTSSCEEEE
T ss_pred             ceeeccccCCe---EEEeccccCCceEEEEcCCCCEEEEE
Confidence            67888988876   33333333344567899999988764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.21  E-value=8.4e-05  Score=72.12  Aligned_cols=85  Identities=9%  Similarity=-0.014  Sum_probs=46.9

Q ss_pred             CceEEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCC--CCeeecceeeCCCCCEEEEEEeccCCCC---CCc
Q 006979          147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE--PLVSYADGIFDPRFNRYVTVREDRRQDA---LNS  219 (623)
Q Consensus       147 ~~~~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~--~~~~~~d~~~sPdG~~l~~v~~~~~~~~---~~~  219 (623)
                      ....++++|  .+++....++.|+++|+.++ .....+......  .........+||||++++....+.....   ...
T Consensus        42 p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~  120 (346)
T d1jmxb_          42 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  120 (346)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             cceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccC
Confidence            446777776  56666667788999999876 222222221000  0112346789999999877654321100   011


Q ss_pred             eeEEEEEEcCCCC
Q 006979          220 TTEIVAIALNGQN  232 (623)
Q Consensus       220 ~~~L~~idl~~g~  232 (623)
                      ...+.+++..+++
T Consensus       121 ~~~i~~~~~~~~~  133 (346)
T d1jmxb_         121 PPRLEVFSTADGL  133 (346)
T ss_dssp             CCEEEEEEGGGGG
T ss_pred             cceEEEEecccce
Confidence            2445666665544

>d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: A novel bacterial esterase
domain: A novel bacterial esterase
species: Alcaligenes sp. [TaxId: 512]

Probab=98.21  E-value=3e-08  Score=97.30  Aligned_cols=102  Identities=13%  Similarity=0.008  Sum_probs=65.2

Q ss_pred             EEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccC-----cCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccC
Q 006979          475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR  549 (623)
Q Consensus       475 i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~-----~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~  549 (623)
                      +++.++.|.+       .+++| ||++||++.+....     .+...+++|+++||.|+++|+||.|.+++.........
T Consensus        46 ~~v~~~~p~~-------~~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~~~  117 (318)
T d1qlwa_          46 MYVRYQIPQR-------AKRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVK  117 (318)
T ss_dssp             EEEEEEEETT-------CCSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHH
T ss_pred             EEEEEECCCC-------CCCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCHHH
Confidence            5556677765       55677 55689998665432     23457899999999999999999988876543322222


Q ss_pred             CccchHHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       550 ~g~~~~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      +...    +.    .+++.-.....++++.|+|+||.++..++
T Consensus       118 ~~~~----~~----~~l~~~~~~~~~~~~~g~s~G~~~~~~~~  152 (318)
T d1qlwa_         118 LGKA----PA----SSLPDLFAAGHEAAWAIFRFGPRYPDAFK  152 (318)
T ss_dssp             TTSS----CG----GGSCCCBCCCHHHHHHHTTSSSBTTBCCT
T ss_pred             HHHH----HH----HHHHHHhhcccccccccccchhHHHHHHh
Confidence            2111    11    11111112345677889999988876665

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.21  E-value=7e-05  Score=71.56  Aligned_cols=234  Identities=10%  Similarity=0.025  Sum_probs=123.2

Q ss_pred             CCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       146 g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      .+.+.++++| ..+++...|+.|.++|+.++ ...+.+...   .........|+|+|+.++. ..+         ..+.
T Consensus        14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~~~---h~~~v~~v~~~~~g~~~~~-~~d---------~~v~   79 (299)
T d1nr0a2          14 AITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFPDV---HATMITGIKTTSKGDLFTV-SWD---------DHLK   79 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSSCS---CSSCEEEEEECTTSCEEEE-ETT---------TEEE
T ss_pred             CcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEcCC---CCCcEEEEEeeccceeecc-cce---------eeEE
Confidence            3556777766 56667778888999999877 223333322   1234567889999985544 332         4567


Q ss_pred             EEEcCCCCcccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccC
Q 006979          225 AIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP  303 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~  303 (623)
                      +++..+........+.. .........|||||+.++... +.        .+.+++...     .......      ...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~--------~i~~~~~~~-----~~~~~~~------~~~  139 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YK--------HIAIYSHGK-----LTEVPIS------YNS  139 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SS--------EEEEEETTE-----EEEEECS------SCE
T ss_pred             EeccCCccccccccccccccccccccccccccccccccc-cc--------ccccccccc-----ccccccc------ccc
Confidence            77776543111111111 122233467999999776543 21        255555221     1222222      223


Q ss_pred             cCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEee--cccccccccccccCcceeEEeecCCCCEEEEEEEECCeE
Q 006979          304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS--LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS  381 (623)
Q Consensus       304 ~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~--~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~  381 (623)
                      ....|+||++++++... ++.  |..+|+.+++...+..  ....+...         .+.   ++++.++ +...++. 
T Consensus       140 ~~~~~s~~~~~l~~g~~-dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~---------~~~---~~~~~l~-~~~~d~~-  202 (299)
T d1nr0a2         140 SCVALSNDKQFVAVGGQ-DSK--VHVYKLSGASVSEVKTIVHPAEITSV---------AFS---NNGAFLV-ATDQSRK-  202 (299)
T ss_dssp             EEEEECTTSCEEEEEET-TSE--EEEEEEETTEEEEEEEEECSSCEEEE---------EEC---TTSSEEE-EEETTSC-
T ss_pred             ccccccccccccccccc-ccc--cccccccccccccccccccccccccc---------ccc---ccccccc-ccccccc-
Confidence            46789999985555544 454  5556666666544332  12222222         222   2665554 4444554 


Q ss_pred             EEEEEeCCCCceee-c---ccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          382 YLGILDDFGHSLSL-L---DIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       382 ~L~~~d~~~~~~~~-l---t~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                       ++++|..++.... +   ......+..+  ++++..++ +++..   ..++..++..++
T Consensus       203 -i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-sgs~d---g~i~iwd~~~~~  257 (299)
T d1nr0a2         203 -VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA-TGSLD---NSVIVWNMNKPS  257 (299)
T ss_dssp             -EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEE-EEETT---SCEEEEETTCTT
T ss_pred             -cccccccccccccccccccccccccccccccccccceE-EEcCC---CEEEEEECCCCC
Confidence             5555665544322 1   1122335554  55665544 44322   357778877654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.16  E-value=0.00027  Score=68.22  Aligned_cols=204  Identities=12%  Similarity=0.005  Sum_probs=107.8

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~  271 (623)
                      ...+++++|||+ |+++....        .+|++++.++.    .+.+..........+|+|||+ |++..+...     
T Consensus        29 ~~e~iAv~pdG~-l~vt~~~~--------~~I~~i~p~g~----~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~-----   89 (302)
T d2p4oa1          29 FLENLASAPDGT-IFVTNHEV--------GEIVSITPDGN----QQIHATVEGKVSGLAFTSNGD-LVATGWNAD-----   89 (302)
T ss_dssp             CEEEEEECTTSC-EEEEETTT--------TEEEEECTTCC----EEEEEECSSEEEEEEECTTSC-EEEEEECTT-----
T ss_pred             CcCCEEECCCCC-EEEEeCCC--------CEEEEEeCCCC----EEEEEcCCCCcceEEEcCCCC-eEEEecCCc-----
Confidence            345688999998 44443322        67999998765    344544444556678999998 655554432     


Q ss_pred             ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecc--ccccc
Q 006979          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSR  349 (623)
Q Consensus       272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~--~~~~~  349 (623)
                        .+++++...... ....+..... .  .......+.+||++| +.+.  +...++++++.++.........  .....
T Consensus        90 --~~~~~~~~~~~~-~~~~~~~~~~-~--~~~n~i~~~~~g~~~-v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  160 (302)
T d2p4oa1          90 --SIPVVSLVKSDG-TVETLLTLPD-A--IFLNGITPLSDTQYL-TADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNS  160 (302)
T ss_dssp             --SCEEEEEECTTS-CEEEEEECTT-C--SCEEEEEESSSSEEE-EEET--TTTEEEEEETTTTEEEEEEECGGGSCSST
T ss_pred             --eEEEEEeccccc-ceeeccccCC-c--cccceeEEccCCCEE-eecc--ccccceeeeccCCcceeEecCCccceeec
Confidence              256666654421 1122222111 1  344577888999654 4554  4457899999887655443221  11010


Q ss_pred             ccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee-e--cccCCcceEee--eecCCEEEEEEecCCCCC
Q 006979          350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-L--LDIPFTDIDNI--TLGNDCLFVEGASGVEPS  424 (623)
Q Consensus       350 ~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~-~--lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~  424 (623)
                      .......+.+.+     +++.+|+..  ....+|++++.+..... .  +.......+.+  +.++ .+|+....   ..
T Consensus       161 ~~~~~~~ngi~~-----~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG-~l~va~~~---~~  229 (302)
T d2p4oa1         161 ESVFPAANGLKR-----FGNFLYVSN--TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG-NLYGATHI---YN  229 (302)
T ss_dssp             TCCSCSEEEEEE-----ETTEEEEEE--TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-CEEEECBT---TC
T ss_pred             cCcccccccccc-----cCCceeeec--CCCCeEEeccccccccccccccccCCCCCcceEECCCC-CEEEEEcC---CC
Confidence            111111122222     567777765  34557888887654321 1  10111112233  4444 45544332   24


Q ss_pred             eEEEEEcCCC
Q 006979          425 SVAKVTLDDH  434 (623)
Q Consensus       425 ~ly~~~l~~~  434 (623)
                      .|++++.++.
T Consensus       230 ~V~~i~p~G~  239 (302)
T d2p4oa1         230 SVVRIAPDRS  239 (302)
T ss_dssp             CEEEECTTCC
T ss_pred             cEEEECCCCC
Confidence            6888877654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.12  E-value=4.2e-05  Score=76.15  Aligned_cols=135  Identities=7%  Similarity=-0.189  Sum_probs=78.2

Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCC--Cce
Q 006979          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKA  273 (623)
Q Consensus       196 ~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~--~~~  273 (623)
                      ...++||+..+........    ...+||++|.++++   +....... +...+.|||||++|++........--  ...
T Consensus        25 ~a~~~~~~~~~v~~~~~~~----g~~~~~~~d~~~~~---~~~~~~~~-~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~   96 (368)
T d1mdah_          25 HGPGAISRRSHITLPAYFA----GTTENWVSCAGCGV---TLGHSLGA-FLSLAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             CCCCCCTTEEEEEECTTTC----SSEEEEEEETTTTE---EEEEEEEC-TTCEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             cccCCCCcceeEEeeccCC----CcceEEEEeCCCCc---EEEEEeCC-CCCcceECCCCCEEEEEcccCccccccccCC
Confidence            4457888876554432211    12789999999987   44333332 34468999999999988743221100  134


Q ss_pred             EEEEEEecCCCceeeeEEEcCCCC-CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEe
Q 006979          274 ELWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (623)
Q Consensus       274 ~L~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~  341 (623)
                      .|.++|..++..+... .+..... .-......+.|+|||+.+++++.  +...+..+|+.+++.....
T Consensus        97 ~v~v~D~~t~~~~~~i-~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~--~~~~v~~~d~~~~~~~~~~  162 (368)
T d1mdah_          97 YVEVFDPVTFLPIADI-ELPDAPRFSVGPRVHIIGNCASSACLLFFLF--GSSAAAGLSVPGASDDQLT  162 (368)
T ss_dssp             EEEEECTTTCCEEEEE-EETTSCSCCBSCCTTSEEECTTSSCEEEEEC--SSSCEEEEEETTTEEEEEE
T ss_pred             eEEEEECCCCcEeeee-cCCccceecccCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcEeEEe
Confidence            5888888776421111 1111110 00023457899999994444554  2236778899888765544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=0.00053  Score=64.73  Aligned_cols=158  Identities=8%  Similarity=-0.029  Sum_probs=88.6

Q ss_pred             CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCc
Q 006979           88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR  166 (623)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~  166 (623)
                      ...+..+.|+|.+.+...-.   ++|...||.....   +....+..        |...+.+..++++ .+++....++.
T Consensus        17 ~~~I~~l~~sp~~~~l~s~s---~Dg~i~iWd~~~~---~~~~~~~~--------h~~~V~~~~~~~~~~~~~~~~~~~~   82 (317)
T d1vyhc1          17 RSPVTRVIFHPVFSVMVSAS---EDATIKVWDYETG---DFERTLKG--------HTDSVQDISFDHSGKLLASCSADMT   82 (317)
T ss_dssp             SSCEEEEEECSSSSEEEEEE---SSSCEEEEETTTC---CCCEEECC--------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCC---CEEEEEeC--------CCCcEEEEeeecccccccccccccc
Confidence            44567889998334433332   3588888866433   22222211        1122344555555 34444445555


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcc
Q 006979          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY  246 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~  246 (623)
                      +...+....  ........   .........++|+++.++....+         ..+.++|+.++..  ...+.......
T Consensus        83 ~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d---------~~~~~~~~~~~~~--~~~~~~~~~~~  146 (317)
T d1vyhc1          83 IKLWDFQGF--ECIRTMHG---HDHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYC--VKTFTGHREWV  146 (317)
T ss_dssp             CCEEETTSS--CEEECCCC---CSSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCE--EEEEECCSSCE
T ss_pred             ccccccccc--cccccccc---ccccceeeeccCCCceEEeeccC---------cceeEeeccccee--eeEEccCCCcc
Confidence            666666543  22222211   12334567799999988766543         4577889888762  33444444455


Q ss_pred             cceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC
Q 006979          247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN  283 (623)
Q Consensus       247 ~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~  283 (623)
                      ....|+|||+.|+....+.        .|.+.++..+
T Consensus       147 ~~~~~~~~~~~l~~~~~d~--------~v~~~~~~~~  175 (317)
T d1vyhc1         147 RMVRPNQDGTLIASCSNDQ--------TVRVWVVATK  175 (317)
T ss_dssp             EEEEECTTSSEEEEEETTS--------CEEEEETTTC
T ss_pred             eeeecccCCCEEEEEeCCC--------eEEEEeeccc
Confidence            5678999999887665332        2677776655

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=0.00044  Score=65.31  Aligned_cols=246  Identities=10%  Similarity=0.035  Sum_probs=130.8

Q ss_pred             CCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 006979          146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV  224 (623)
Q Consensus       146 g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~  224 (623)
                      .+.+.+++++ .++++...|+.|.++|+.++ .....+...    ........|+|++..++....+.         .+.
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~h----~~~V~~~~~~~~~~~~~~~~~~~---------~~~   84 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGH----TDSVQDISFDHSGKLLASCSADM---------TIK   84 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCC----SSCEEEEEECTTSSEEEEEETTS---------CCC
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-CEEEEEeCC----CCcEEEEeeeccccccccccccc---------ccc
Confidence            3456666655 56677777888999999877 344455432    33456788999999887765432         234


Q ss_pred             EEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979          225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       225 ~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  304 (623)
                      ..+......  ...+...........|+||++.|+....+        ..+.+.++..+.   ....+.+..    ..+.
T Consensus        85 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--------~~~~~~~~~~~~---~~~~~~~~~----~~~~  147 (317)
T d1vyhc1          85 LWDFQGFEC--IRTMHGHDHNVSSVSIMPNGDHIVSASRD--------KTIKMWEVQTGY---CVKTFTGHR----EWVR  147 (317)
T ss_dssp             EEETTSSCE--EECCCCCSSCEEEEEECSSSSEEEEEETT--------SEEEEEETTTCC---EEEEEECCS----SCEE
T ss_pred             ccccccccc--ccccccccccceeeeccCCCceEEeeccC--------cceeEeecccce---eeeEEccCC----Ccce
Confidence            455554431  12222223344557799999998866533        247778887763   333344433    3456


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEE-EeecccccccccccccC-----------cceeEEeecCCCCEEE
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGI-----------NSYEIIQSHGEKNLIA  372 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~-l~~~~~~~~~~~w~~~~-----------~~~~~l~~s~~~~~l~  372 (623)
                      ...|++|+++++.... ++.  +..++..+++... +......+....|.+..           ......    ..+.++
T Consensus       148 ~~~~~~~~~~l~~~~~-d~~--v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  220 (317)
T d1vyhc1         148 MVRPNQDGTLIASCSN-DQT--VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG----KPGPFL  220 (317)
T ss_dssp             EEEECTTSSEEEEEET-TSC--EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----------CCEE
T ss_pred             eeecccCCCEEEEEeC-CCe--EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeec----cCCcee
Confidence            7789999985555444 343  4445555544322 21111111111111100           011111    223345


Q ss_pred             EEEEECCeEEEEEEeCCCCce-eecccCCcceEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          373 CSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       373 ~~~~~~g~~~L~~~d~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ++...++.  +..+|..+++. ..+......+..+  ++++..++ ++...   ..|..+++.+++
T Consensus       221 ~~~~~d~~--i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d---g~i~iwd~~~~~  280 (317)
T d1vyhc1         221 LSGSRDKT--IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADD---KTLRVWDYKNKR  280 (317)
T ss_dssp             EEEETTSE--EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE-EEETT---TEEEEECCTTSC
T ss_pred             EeccCCCE--EEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEE-EEECC---CeEEEEECCCCc
Confidence            55555554  55557766654 3344333445554  55555444 33322   457777777665

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.08  E-value=0.00096  Score=58.59  Aligned_cols=245  Identities=13%  Similarity=0.111  Sum_probs=131.0

Q ss_pred             CCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCC-CC
Q 006979          154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QN  232 (623)
Q Consensus       154 ~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~-g~  232 (623)
                      +|.+++.....|.+-.+-+.++  +..+||..   |-....+|.  +.=.++.|+++-...   .....||..++.. |+
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~--~~vkLtke---PI~~~~~Pk--~~ldfi~f~RDV~kG---kE~Hai~~~Nlk~~GE   94 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGG--ETVKLNRE---PINSVLDPH--YGVGRVILVRDVSKG---AEQHALFKVNTSRPGE   94 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSS--SCEECCSS---CCSEECEEC--TTBSEEEEEEECSTT---SCCEEEEEEETTSTTC
T ss_pred             CCcEEEEEeccceEEEEEEeCC--EEEEEecc---cccCcCCCc--cCcceEEEEeehhcC---cceeeEEEEccCCCCe
Confidence            5567666655554333333455  78888875   222333333  333479998874422   1348899999973 33


Q ss_pred             cccceecccCCCcccceeeCCCCCEEEEEEecCCCC-----------------CC-------------------CceEEE
Q 006979          233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM-----------------PW-------------------DKAELW  276 (623)
Q Consensus       233 ~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~-----------------p~-------------------~~~~L~  276 (623)
                         ..++...... .-.+..-|++.++|+...+...                 |+                   +...++
T Consensus        95 ---E~~i~spk~v-RI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF  170 (313)
T d2hu7a1          95 ---EQRLEAVKPM-RILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLF  170 (313)
T ss_dssp             ---EEECTTSCSB-EEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred             ---eeEecCCceE-EEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEE
Confidence               3344332211 1112333566666665433110                 00                   111133


Q ss_pred             EEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCC-CCeeeEEEEecCCCeEEEEeeccccccccccccc
Q 006979          277 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK-NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFG  355 (623)
Q Consensus       277 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~-~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~  355 (623)
                      +.|+..+    ..++++..+    +++.++..+++.++  +++.. -|...+..+|+++++.+++.-...++....    
T Consensus       171 ~adl~SG----~lri~tpke----GS~~~ay~~~gnKV--~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~----  236 (313)
T d2hu7a1         171 TSNLSSG----GLRVFDSGE----GSFSSASISPGMKV--TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYR----  236 (313)
T ss_dssp             EEETTTE----EEEEECCSS----EEEEEEEECTTSCE--EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHC----
T ss_pred             EEecccC----CEEEecCCC----CcccceeEccCcee--eeccCCCCceEEEEEecccCceeeeecCcccceeec----
Confidence            4444332    344444444    66777777777765  22211 232333366888888777653333332211    


Q ss_pred             CcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCceeecccCCcceEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          356 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       356 ~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      .-...|+...|++ .|++.+.++|+++|+.   + |+  .+..+.+.+..+..-++.+||..++..+|+.+..+  ..|+
T Consensus       237 p~~I~~~~Y~Pdd-~L~iiakrdG~s~lF~---n-Gk--~in~p~G~~~gat~i~~~iyfshsSL~tP~kI~~~--~~~~  307 (313)
T d2hu7a1         237 PTAITWLGYLPDG-RLAVVARREGRSAVFI---D-GE--RVEAPQGNHGRVVLWRGKLVTSHTSLSTPPRIVSL--PSGE  307 (313)
T ss_dssp             CSEEEEEEECTTS-CEEEEEEETTEEEEEE---T-TE--EECCCSSEEEEEEEETTEEEEEEEETTEEEEEEEE--TTCC
T ss_pred             ceEEEeeeeCCCC-cEEEEEecCCchheee---c-ce--EecCCCCcccceEEECCEEEEeecccCCCceeEEc--CCCC
Confidence            0112222223355 4666788999999973   2 32  34555666666666688999999999999887654  4555

>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases
domain: Fatty acid synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.3e-06  Score=81.19  Aligned_cols=92  Identities=10%  Similarity=0.042  Sum_probs=55.9

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~  571 (623)
                      +.+.| ||++||++++.  ..|...+..|   ++.|+.+|.+|-+....  .        ....+|+..++..+.     
T Consensus        23 ~~~~P-l~l~Hg~~gs~--~~~~~l~~~L---~~~v~~~d~~g~~~~~~--~--------~~~a~~~~~~~~~~~-----   81 (286)
T d1xkta_          23 SSERP-LFLVHPIEGST--TVFHSLASRL---SIPTYGLQCTRAAPLDS--I--------HSLAAYYIDCIRQVQ-----   81 (286)
T ss_dssp             CCSCC-EEEECCTTCCC--GGGHHHHHTC---SSCEEEECCCTTSCCSC--H--------HHHHHHHHHHHHHHC-----
T ss_pred             CCCCe-EEEECCCCccH--HHHHHHHHHc---CCeEEEEeCCCCCCCCC--H--------HHHHHHHHHHHHHhc-----
Confidence            44557 56899996553  3454445444   68899999998554321  0        111334444444332     


Q ss_pred             CCCceEEEEcChHHHHHHHHh-cCCCceeEEEec
Q 006979          572 DEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASL  604 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~  604 (623)
                      +.+++.++|||+||.+++.++ .+|++...++..
T Consensus        82 ~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l  115 (286)
T d1xkta_          82 PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTH  115 (286)
T ss_dssp             CSSCCEEEEETHHHHHHHHHHHHHHHC------C
T ss_pred             CCCceEEeecCCccHHHHHHHHHHHHcCCCceeE
Confidence            236899999999999999999 788877665443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.00  E-value=0.0014  Score=64.79  Aligned_cols=170  Identities=11%  Similarity=0.014  Sum_probs=86.3

Q ss_pred             ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cCCCcccceeeCCCCCEEEEEEecCCCCCCCce
Q 006979          195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA  273 (623)
Q Consensus       195 d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~  273 (623)
                      ..++||||+.|+.+.+..        ...|.++.+++.   ..... ..........++|||+.++....+..     ..
T Consensus        44 ~la~s~d~~~ly~~~~~~--------~~~~~i~~~~~~---~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~-----~~  107 (365)
T d1jofa_          44 WMTFDHERKNIYGAAMKK--------WSSFAVKSPTEI---VHEASHPIGGHPRANDADTNTRAIFLLAAKQP-----PY  107 (365)
T ss_dssp             EEEECTTSSEEEEEEBTE--------EEEEEEEETTEE---EEEEEEECCSSGGGGCTTSCCEEEEEEECSST-----TC
T ss_pred             EEEEcCCCCEEEEEeCCc--------EEEEEEeCCCCe---EEEeeecCCCCcEEEEECCCCCEEEEEEecCC-----CC
Confidence            377999999887765422        567888876654   22211 11223344568999998766654432     22


Q ss_pred             EEEEEEecCCC------------ceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEe
Q 006979          274 ELWVGYISENG------------DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY  341 (623)
Q Consensus       274 ~L~v~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~  341 (623)
                      .++...+...+            .+............  ..+.+..++|||+.+|+.+...+.-.+|.++. .++...+.
T Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~-~g~~~~~~  184 (365)
T d1jofa_         108 AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQEN--TGIHGMVFDPTETYLYSADLTANKLWTHRKLA-SGEVELVG  184 (365)
T ss_dssp             CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTT--CCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TSCEEEEE
T ss_pred             EEEEeEccCCCCcceeEeeeecceecCcccCcccCCC--CcceEEEECCCCCEEEEeeCCCCEEEEEEccC-CCceeecc
Confidence            34444433221            11110000011101  23567899999996667776334333444333 33333332


Q ss_pred             ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC
Q 006979          342 SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG  390 (623)
Q Consensus       342 ~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~  390 (623)
                      ....  ..+  ..+.+.+.+.+   +++.+|++.+.++.-.+|.++..+
T Consensus       185 ~~~~--~~~--g~gPr~i~f~p---dg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         185 SVDA--PDP--GDHPRWVAMHP---TGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEC--SST--TCCEEEEEECT---TSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceee--cCC--CCceEEEEECC---CCceEEEeccCCCEEEEEEecCCC
Confidence            1100  000  11234455543   888888877666665566555433

>d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases
domain: Surfactin synthetase, SrfA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.98  E-value=4.7e-06  Score=77.06  Aligned_cols=88  Identities=9%  Similarity=0.012  Sum_probs=61.2

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD  572 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d  572 (623)
                      ++.|.||++||..+  ....|...++.|.  +|.|..+|++|.+.                ..+|+.+.++.+.     .
T Consensus        15 ~~~~~l~~lhg~~g--~~~~~~~la~~L~--~~~v~~~~~~g~~~----------------~a~~~~~~i~~~~-----~   69 (230)
T d1jmkc_          15 DQEQIIFAFPPVLG--YGLMYQNLSSRLP--SYKLCAFDFIEEED----------------RLDRYADLIQKLQ-----P   69 (230)
T ss_dssp             TCSEEEEEECCTTC--CGGGGHHHHHHCT--TEEEEEECCCCSTT----------------HHHHHHHHHHHHC-----C
T ss_pred             CCCCeEEEEcCCCC--CHHHHHHHHHHCC--CCEEeccCcCCHHH----------------HHHHHHHHHHHhC-----C
Confidence            34578999999944  4456777788884  79999999997421                2456666665543     2


Q ss_pred             CCceEEEEcChHHHHHHHHh-cC---CCceeEEEecc
Q 006979          573 EKRLCITGGSAGGYTTLAAL-AF---RDTFKAGASLY  605 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~~---~~~f~a~v~~~  605 (623)
                      .+++.|+|||+||.+++.++ .+   ...+...+...
T Consensus        70 ~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~  106 (230)
T d1jmkc_          70 EGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVD  106 (230)
T ss_dssp             SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             CCcEEEEeeccChHHHHHHHHhhhhhCccceeeeccc
Confidence            36799999999999999887 44   34455444443

>d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: TTHA1544-like
domain: Hypothetical protein TTHA1544
species: Thermus thermophilus [TaxId: 274]

Probab=97.90  E-value=6.3e-06  Score=68.10  Aligned_cols=77  Identities=10%  Similarity=-0.046  Sum_probs=49.8

Q ss_pred             CEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCCCCCc
Q 006979          496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR  575 (623)
Q Consensus       496 Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r  575 (623)
                      |.||++||.. .    .|   .+. .+++|.|+++|.||.|.+...          ....+++.+.+..++++  .+-++
T Consensus        22 ~pvlllHG~~-~----~w---~~~-L~~~yrvi~~DlpG~G~S~~p----------~~s~~~~a~~i~~ll~~--L~i~~   80 (122)
T d2dsta1          22 PPVLLVAEEA-S----RW---PEA-LPEGYAFYLLDLPGYGRTEGP----------RMAPEELAHFVAGFAVM--MNLGA   80 (122)
T ss_dssp             SEEEEESSSG-G----GC---CSC-CCTTSEEEEECCTTSTTCCCC----------CCCHHHHHHHHHHHHHH--TTCCS
T ss_pred             CcEEEEeccc-c----cc---ccc-ccCCeEEEEEeccccCCCCCc----------ccccchhHHHHHHHHHH--hCCCC
Confidence            5677799852 1    11   222 357999999999996544211          12345555555544443  23468


Q ss_pred             eEEEEcChHHHHHHHHhc
Q 006979          576 LCITGGSAGGYTTLAALA  593 (623)
Q Consensus       576 v~i~G~S~GG~~~~~~~~  593 (623)
                      ..|+|+|+||.+++.++.
T Consensus        81 ~~viG~S~Gg~ia~~laa   98 (122)
T d2dsta1          81 PWVLLRGLGLALGPHLEA   98 (122)
T ss_dssp             CEEEECGGGGGGHHHHHH
T ss_pred             cEEEEeCccHHHHHHHHh
Confidence            899999999999998873

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=0.0043  Score=60.70  Aligned_cols=157  Identities=12%  Similarity=0.012  Sum_probs=87.5

Q ss_pred             CceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       147 ~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      +.+.+++++ ..+++...++.|.+++...+ .....+...    ........+++++..++....+         ..+.+
T Consensus       124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~-~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~---------~~i~~  189 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGH----EQDIYSLDYFPSGDKLVSGSGD---------RTVRI  189 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEE
T ss_pred             EEEEEECCCCCcceeccccccccccccccc-ccccccccc----cccccccccccccccccccccc---------eeeee
Confidence            345666666 56666667888999998765 112222211    2335567899999888765543         56888


Q ss_pred             EEcCCCCcccceecccCCCcccce-eeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeE----EEcCCCCCcc
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFP-RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV----CVAGFDPTIV  300 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p-~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~----~~~~~~~~~~  300 (623)
                      .|..+..   ........+..... .+++||+.|+....+.        .|++++...+..+....    ...+..    
T Consensus       190 ~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--------~i~i~~~~~~~~~~~~~~~~~~~~~h~----  254 (388)
T d1erja_         190 WDLRTGQ---CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDR--------AVRVWDSETGFLVERLDSENESGTGHK----  254 (388)
T ss_dssp             EETTTTE---EEEEEECSSCEEEEEECSTTCCEEEEEETTS--------CEEEEETTTCCEEEEEC------CCCS----
T ss_pred             eeccccc---cccccccccccccccccCCCCCeEEEEcCCC--------eEEEeecccCccceeeccccccccCCC----
Confidence            8887765   32222222222223 3556888877655332        38888887663211100    011111    


Q ss_pred             ccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCC
Q 006979          301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN  335 (623)
Q Consensus       301 ~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~  335 (623)
                      ..+....|+|||++++.... ++.-.+  +|..++
T Consensus       255 ~~v~~l~~s~~~~~l~s~~~-d~~i~i--wd~~~~  286 (388)
T d1erja_         255 DSVYSVVFTRDGQSVVSGSL-DRSVKL--WNLQNA  286 (388)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TSEEEE--EEC---
T ss_pred             CCEEEEEECCCCCEEEEEEC-CCcEEE--EeccCC
Confidence            34567899999995555544 454444  454443

>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Pancreatic lipase, N-terminal domain
domain: Pancreatic lipase, N-terminal domain
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=97.88  E-value=6.5e-06  Score=80.14  Aligned_cols=112  Identities=11%  Similarity=-0.008  Sum_probs=72.0

Q ss_pred             CCCCEEEEecCCCCCcccCcCCHHhH-HHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCCC
Q 006979          493 EKPPLLVKSHGGPTSEARGILNLSIQ-YWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA  571 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~~~~~-~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~~  571 (623)
                      ...|++|++||.-............. +|....+.|+++|++...  ...|..+...  -....+.+...+++|.++..+
T Consensus        68 ~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a--~~~Y~~a~~n--~~~Vg~~ia~~i~~l~~~~g~  143 (337)
T d1rp1a2          68 TDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGS--QTSYTQAANN--VRVVGAQVAQMLSMLSANYSY  143 (337)
T ss_dssp             TTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHH--SSCHHHHHHH--HHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeecccc--CcchHHHHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence            45799999999854433322223333 444456999999986421  1123222111  011234556677787776568


Q ss_pred             CCCceEEEEcChHHHHHHHHhcCCCceeEEEecccCC
Q 006979          572 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVS  608 (623)
Q Consensus       572 d~~rv~i~G~S~GG~~~~~~~~~~~~f~a~v~~~g~~  608 (623)
                      ++++|.|+|||+|++++..+.++...+..++...|..
T Consensus       144 ~~~~vhlIGhSLGAhvAG~aG~~~~~l~rItgLDPA~  180 (337)
T d1rp1a2         144 SPSQVQLIGHSLGAHVAGEAGSRTPGLGRITGLDPVE  180 (337)
T ss_dssp             CGGGEEEEEETHHHHHHHHHHHTSTTCCEEEEESCCC
T ss_pred             ChhheEEEeecHHHhhhHHHHHhhccccceeccCCCc
Confidence            8999999999999999998886545566666666644

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=0.0015  Score=63.28  Aligned_cols=211  Identities=8%  Similarity=-0.041  Sum_probs=107.1

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccee--eeecCCceEEEeCC--EEEEEe-C
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTT--AQEYGGGAFRIFGD--TVIFSN-Y  162 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~--~~~~g~~~~~~s~d--~l~f~~-~  162 (623)
                      ..+..++|+| ++..|....  .++|...||.....  .....+ .  ......  .+...+.+..++++  .++... .
T Consensus        64 ~~v~~v~fsP~~~g~~lasg--s~Dg~i~iWd~~~~--~~~~~~-~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSG--DESGKVIVWGWTFD--KESNSV-E--VNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEE--ETTSEEEEEEEEEE--GGGTEE-E--EEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             CCEEEEEEeeCCCCCEEEEE--eCCCCEEEeeecCC--cceeee-e--cccccccccccCcEEEEEECCCCCccceeecc
Confidence            3466788988 433332222  23588888865432  111111 0  001111  11112345566655  343333 2


Q ss_pred             CCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc--
Q 006979          163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--  240 (623)
Q Consensus       163 ~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~--  240 (623)
                      .+..+.+++.+++ .....+...    ........|+|++..++.+....        ..+.++|....+.  ...+.  
T Consensus       137 ~~~~~~~~~~~~~-~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~d--------~~v~~~d~~~~~~--~~~~~~~  201 (325)
T d1pgua1         137 RDNFGVFISWDSG-NSLGEVSGH----SQRINACHLKQSRPMRSMTVGDD--------GSVVFYQGPPFKF--SASDRTH  201 (325)
T ss_dssp             SSCSEEEEETTTC-CEEEECCSC----SSCEEEEEECSSSSCEEEEEETT--------TEEEEEETTTBEE--EEEECSS
T ss_pred             ccceEEEEeeccc-ccceeeeec----ccccccccccccccceEEEeecc--------ccccccccccccc--ceecccc
Confidence            3445777777765 223444322    34566688999998766554432        4577778766541  11221  


Q ss_pred             -cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeC---CCCcEEE
Q 006979          241 -SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS---SKGELFF  316 (623)
Q Consensus       241 -~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws---~DG~l~~  316 (623)
                       .........+|+||+..++.....+       ..|.++|+..+.   ....+.+..    ..+....|+   +||+++.
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d-------~~i~iwd~~~~~---~~~~l~~~~----~~v~~~~~s~~~~dg~~l~  267 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSD-------RKISCFDGKSGE---FLKYIEDDQ----EPVQGGIFALSWLDSQKFA  267 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETT-------CCEEEEETTTCC---EEEECCBTT----BCCCSCEEEEEESSSSEEE
T ss_pred             cCCCCccEEeeeccccceeccccccc-------cceeeeeecccc---ccccccccc----cccccceeeeeccCCCEEE
Confidence             1223455678999854444443232       237888887663   333444333    233444555   6888444


Q ss_pred             EEeCCCCeeeEEEEecCCCeEE
Q 006979          317 VTDRKNGFWNLHKWIESNNEVL  338 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~~~~~  338 (623)
                      .... ++.  |..+|+.+++..
T Consensus       268 s~s~-D~~--i~iwd~~~~~~~  286 (325)
T d1pgua1         268 TVGA-DAT--IRVWDVTTSKCV  286 (325)
T ss_dssp             EEET-TSE--EEEEETTTTEEE
T ss_pred             EEeC-CCe--EEEEECCCCCEE
Confidence            4443 354  555677777643

>d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: O-acetyltransferase
domain: Homoserine O-acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.85  E-value=3.6e-05  Score=75.98  Aligned_cols=113  Identities=17%  Similarity=0.122  Sum_probs=74.3

Q ss_pred             CCCCEEEEecCCCCCcccCc------C-CHH---hHHHHcCceEEEEECCCCCCC--CchhHHHh-----hccCCccchH
Q 006979          493 EKPPLLVKSHGGPTSEARGI------L-NLS---IQYWTSRGWAFVDVNYGGSTG--YGREFRER-----LLGRWGIVDV  555 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~------~-~~~---~~~~a~~G~~v~~~d~rGs~~--~g~~~~~~-----~~~~~g~~~~  555 (623)
                      .+-++||++|+-.+......      | ...   -..+=..-|-|+++|+.|++.  .|....+.     ...++....+
T Consensus        37 ~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~gSs~p~s~~p~tg~~~g~~FP~iti  116 (357)
T d2b61a1          37 EKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVV  116 (357)
T ss_dssp             TCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCH
T ss_pred             CCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCccccCCcCCCCCCCCCCCCcccccchh
Confidence            44589999998743332211      1 110   111222459999999998543  11111110     0123455678


Q ss_pred             HHHHHHHHHHHhCCCCCCCce-EEEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          556 NDCCSCATFLVGSGKADEKRL-CITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       556 ~D~~~~~~~l~~~~~~d~~rv-~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      .|++++-.-|+++  ..-+|| +|+|+||||+.++..+ .+|+.+..+|++++-
T Consensus       117 ~D~v~aq~~Ll~~--LGI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~  168 (357)
T d2b61a1         117 QDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSS  168 (357)
T ss_dssp             HHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCC
T ss_pred             HHHHHHHHHHHHH--hCcceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccc
Confidence            9999999888875  234688 8889999999999888 999999999988774

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.84  E-value=0.00045  Score=68.59  Aligned_cols=172  Identities=10%  Similarity=0.053  Sum_probs=89.3

Q ss_pred             EEEeCC--EEEEEeCCCCcEEEEeCCCCCCCceecCCC-CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          150 FRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       150 ~~~s~d--~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~-~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      ..+++|  .++..+.....|++++.+.. ......... ...+...-....++|||++++.+.+..        ++|.++
T Consensus       150 v~~sPdG~~l~v~d~g~d~v~~~~~~~~-g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~--------~~V~v~  220 (365)
T d1jofa_         150 MVFDPTETYLYSADLTANKLWTHRKLAS-GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG--------NRICEY  220 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTT-SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT--------TEEEEE
T ss_pred             EEECCCCCEEEEeeCCCCEEEEEEccCC-CceeeccceeecCCCCceEEEEECCCCceEEEeccCC--------CEEEEE
Confidence            445555  56666666667888775432 122111100 001122334578999999877665533        567777


Q ss_pred             EcCCCCccccee-----ccc-C------CC-----cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeee
Q 006979          227 ALNGQNIQEPKV-----LVS-G------SD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR  289 (623)
Q Consensus       227 dl~~g~~~~~~~-----l~~-~------~~-----~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~  289 (623)
                      +.+++.......     +.. .      ..     ......+||||++|+.....+...  ....|..++++..+.+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~--~~~~i~~~~~~~~g~~~~~  298 (365)
T d1jofa_         221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE--LQGYIAGFKLRDCGSIEKQ  298 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT--SCCEEEEEEECTTSCEEEE
T ss_pred             EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCc--cceEEEEEEecCCCceeeE
Confidence            776653110111     110 0      00     112346999999987665332210  1334666666655443322


Q ss_pred             EEEcCCC-CCccccCcCceeCC-CCcEEEEEeCCCCeeeEEEEecCC
Q 006979          290 VCVAGFD-PTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESN  334 (623)
Q Consensus       290 ~~~~~~~-~~~~~~~~~~~ws~-DG~l~~~~~~~~g~~~L~~~d~~~  334 (623)
                      ..+.... ..  .....+..+| ||+++++++...+.-.+|+++.++
T Consensus       299 ~~~~~~~~~G--~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         299 LFLSPTPTSG--GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEECSSCC--TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             eEeeEEEcCC--CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            2221111 01  2345678888 789776776646666777776443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=0.00055  Score=66.46  Aligned_cols=206  Identities=7%  Similarity=-0.038  Sum_probs=105.4

Q ss_pred             eecceeeCC--CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccee------cccCCCcccceeeCCCCCEEEEEEe
Q 006979          192 SYADGIFDP--RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV------LVSGSDFYAFPRMDPRGERMAWIEW  263 (623)
Q Consensus       192 ~~~d~~~sP--dG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~------l~~~~~~~~~p~wSPDG~~la~~~~  263 (623)
                      .....+|+|  +|++|+....|         ..|.+.|+..+.......      ......-+....|||||++|+....
T Consensus        65 ~v~~v~fsP~~~g~~lasgs~D---------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  135 (325)
T d1pgua1          65 VVTTVKFSPIKGSQYLCSGDES---------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE  135 (325)
T ss_dssp             CEEEEEECSSTTCCEEEEEETT---------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             CEEEEEEeeCCCCCEEEEEeCC---------CCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec
Confidence            356688998  55666544433         345666665432100000      0111122445789999999988774


Q ss_pred             cCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEeCCCCeeeEEEEecCCCeEEEEee
Q 006979          264 HHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS  342 (623)
Q Consensus       264 ~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~~~~g~~~L~~~d~~~~~~~~l~~  342 (623)
                      +..      ..+.+.+++.+.   ....+.+..    ..+....|+|++. ++..... ++.-.  .+|....+...-..
T Consensus       136 ~~~------~~~~~~~~~~~~---~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~-d~~v~--~~d~~~~~~~~~~~  199 (325)
T d1pgua1         136 GRD------NFGVFISWDSGN---SLGEVSGHS----QRINACHLKQSRPMRSMTVGD-DGSVV--FYQGPPFKFSASDR  199 (325)
T ss_dssp             CSS------CSEEEEETTTCC---EEEECCSCS----SCEEEEEECSSSSCEEEEEET-TTEEE--EEETTTBEEEEEEC
T ss_pred             ccc------ceEEEEeecccc---cceeeeecc----cccccccccccccceEEEeec-ccccc--cccccccccceecc
Confidence            432      226666777652   233344433    4566789999988 5554444 45444  45655554332221


Q ss_pred             cccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce-eecccCCcce----Eee-eecCCEEEEE
Q 006979          343 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDI----DNI-TLGNDCLFVE  416 (623)
Q Consensus       343 ~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~-~~lt~~~~~v----~~~-~~~~~~~~~~  416 (623)
                      .......  +.   ..+.|.   |+++.++++...++.-+|  +|..+++. ..+......+    ..+ .+++.+++ +
T Consensus       200 ~~~~~~~--~v---~~v~~~---pd~~~~l~s~~~d~~i~i--wd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~-s  268 (325)
T d1pgua1         200 THHKQGS--FV---RDVEFS---PDSGEFVITVGSDRKISC--FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA-T  268 (325)
T ss_dssp             SSSCTTC--CE---EEEEEC---STTCCEEEEEETTCCEEE--EETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEE-E
T ss_pred             cccCCCC--cc---EEeeec---cccceeccccccccceee--eeeccccccccccccccccccceeeeeccCCCEEE-E
Confidence            1111111  10   122232   366667777766776555  57766654 4444333222    222 24555544 3


Q ss_pred             EecCCCCCeEEEEEcCCCcc
Q 006979          417 GASGVEPSSVAKVTLDDHKL  436 (623)
Q Consensus       417 ~~s~~~~~~ly~~~l~~~~~  436 (623)
                      ++..   ..|.+.++.+++.
T Consensus       269 ~s~D---~~i~iwd~~~~~~  285 (325)
T d1pgua1         269 VGAD---ATIRVWDVTTSKC  285 (325)
T ss_dssp             EETT---SEEEEEETTTTEE
T ss_pred             EeCC---CeEEEEECCCCCE
Confidence            3322   3577778887753

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.81  E-value=0.00012  Score=70.74  Aligned_cols=141  Identities=11%  Similarity=-0.034  Sum_probs=86.8

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE  235 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~  235 (623)
                      .++++...++.|.++|+.++ .....+...    .......+|+|+|+.|+....+         ..+.++|+.....  
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~-~~~~~~~~h----~~~i~~v~~~p~~~~l~s~s~d---------~~i~~~~~~~~~~--  260 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREG-MCRQTFTGH----ESDINAICFFPNGNAFATGSDD---------ATCRLFDLRADQE--  260 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTT-EEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEE--
T ss_pred             ceeEEeecCceEEEEECCCC-cEEEEEeCC----CCCeEEEEECCCCCEEEEEeCC---------CeEEEEeeccccc--
Confidence            34555556777999998765 222333322    2345668899999988776543         4578888877641  


Q ss_pred             ceeccc--CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc
Q 006979          236 PKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       236 ~~~l~~--~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      ...+..  .........|+|||++|+....+        ..|+++|+..+.   ....+.+..    ..+....|+|||+
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d--------g~i~iwd~~~~~---~~~~~~~H~----~~V~~l~~s~d~~  325 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDD--------FNCNVWDALKAD---RAGVLAGHD----NRVSCLGVTDDGM  325 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEETT--------SCEEEEETTTCC---EEEEECCCS----SCEEEEEECTTSS
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECC--------CEEEEEECCCCc---EEEEEcCCC----CCEEEEEEeCCCC
Confidence            222221  12224557899999988765433        238888988763   344455544    4567889999998


Q ss_pred             EEEEEeCCCCeeeEE
Q 006979          314 LFFVTDRKNGFWNLH  328 (623)
Q Consensus       314 l~~~~~~~~g~~~L~  328 (623)
                      +++.... +|.-+||
T Consensus       326 ~l~s~s~-Dg~v~iW  339 (340)
T d1tbga_         326 AVATGSW-DSFLKIW  339 (340)
T ss_dssp             CEEEEET-TSCEEEE
T ss_pred             EEEEEcc-CCEEEEe
Confidence            5444443 4554443

>d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: O-acetyltransferase
domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG
species: Acremonium chrysogenum [TaxId: 5044]

Probab=97.77  E-value=4.6e-05  Score=75.72  Aligned_cols=113  Identities=12%  Similarity=0.103  Sum_probs=74.7

Q ss_pred             CCCCEEEEecCCCCCcccCcCC-H---HhHHHHcCceEEEEECCCCCCCCchhHHHhh----------ccCCccchHHHH
Q 006979          493 EKPPLLVKSHGGPTSEARGILN-L---SIQYWTSRGWAFVDVNYGGSTGYGREFRERL----------LGRWGIVDVNDC  558 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~~~~-~---~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~----------~~~~g~~~~~D~  558 (623)
                      .+-++||++|+-.+......|- .   .-+.+=..-|-|+++|..|++ +|..-....          -.++....+.|+
T Consensus        42 ~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~-~gst~p~s~~p~~~~~~~yg~~FP~~ti~D~  120 (376)
T d2vata1          42 SRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSP-FGSAGPCSPDPDAEGQRPYGAKFPRTTIRDD  120 (376)
T ss_dssp             TSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCS-SSSSSTTSBCTTTC--CBCGGGCCCCCHHHH
T ss_pred             CCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCC-cCCCCCCCCCcccccCCcccccCCcchhHHH
Confidence            4458999999875444433321 1   112232356999999999864 222111000          112445678999


Q ss_pred             HHHHHHHHhCCCCCCCce-EEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          559 CSCATFLVGSGKADEKRL-CITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       559 ~~~~~~l~~~~~~d~~rv-~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +.+-.-|.++=  .-+|+ +|+|+||||+.++..+ .+|+.+..+|++++-.
T Consensus       121 v~aq~~ll~~L--GI~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~~  170 (376)
T d2vata1         121 VRIHRQVLDRL--GVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSC  170 (376)
T ss_dssp             HHHHHHHHHHH--TCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCS
T ss_pred             HHHHHHHHHHh--CcceEEEeecccHHHHHHHHHHHhchHHHhhhccccccc
Confidence            99877776652  23676 7899999999999888 8999999998887743

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.74  E-value=0.0017  Score=61.98  Aligned_cols=61  Identities=15%  Similarity=-0.024  Sum_probs=41.3

Q ss_pred             CCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEec
Q 006979          146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRED  211 (623)
Q Consensus       146 g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~  211 (623)
                      .+.+.+++++ ..+++...|+.|.++|+.++ .....+...    ........|+|+|++++....+
T Consensus        57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~-~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~~d  118 (340)
T d1tbga_          57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-NKVHAIPLR----SSWVMTCAYAPSGNYVACGGLD  118 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEEECS----CSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEECCCCCEEEEEECCCceeeeecccc-eeEEEEecc----cccEEeeEeeccceeeeeeccc
Confidence            3556666666 56677778889999999876 223334322    2345678899999998876554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=0.0032  Score=61.73  Aligned_cols=161  Identities=11%  Similarity=0.025  Sum_probs=90.5

Q ss_pred             cCCceEEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCC--------------CCCCeeecceeeCCCCCEEEEEE
Q 006979          145 YGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--------------GEPLVSYADGIFDPRFNRYVTVR  209 (623)
Q Consensus       145 ~g~~~~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~--------------~~~~~~~~d~~~sPdG~~l~~v~  209 (623)
                      -.+.+.++++| .++.+. .++.|.++++.++ .....+....              ..........+|+|+|++|+...
T Consensus        63 ~~V~~l~fs~dg~~lasg-~d~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~  140 (388)
T d1erja_          63 SVVCCVKFSNDGEYLATG-CNKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  140 (388)
T ss_dssp             SCCCEEEECTTSSEEEEE-CBSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEE-eCCeEEEEEeccc-ceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence            34667777776 454554 4677999998765 2222222110              00112245678999999887765


Q ss_pred             eccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeee
Q 006979          210 EDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR  289 (623)
Q Consensus       210 ~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~  289 (623)
                      .+         ..+.+.|...++.  ...+......+....|++++..++....        ...+.+.|.....   ..
T Consensus       141 ~d---------g~v~i~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~--------~~~i~~~d~~~~~---~~  198 (388)
T d1erja_         141 ED---------RLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKLVSGSG--------DRTVRIWDLRTGQ---CS  198 (388)
T ss_dssp             TT---------SCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEET--------TSEEEEEETTTTE---EE
T ss_pred             cc---------ccccccccccccc--cccccccccccccccccccccccccccc--------ceeeeeeeccccc---cc
Confidence            54         4477888877751  2223323344566789999998876652        2347788877652   22


Q ss_pred             EEEcCCCCCccccCcCcee-CCCCcEEEEEeCCCCeeeEEEEecCCCeE
Q 006979          290 VCVAGFDPTIVESPTEPKW-SSKGELFFVTDRKNGFWNLHKWIESNNEV  337 (623)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~w-s~DG~l~~~~~~~~g~~~L~~~d~~~~~~  337 (623)
                      .......     ......+ .+|+++++.... ++  .|..+|..++..
T Consensus       199 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~  239 (388)
T d1erja_         199 LTLSIED-----GVTTVAVSPGDGKYIAAGSL-DR--AVRVWDSETGFL  239 (388)
T ss_dssp             EEEECSS-----CEEEEEECSTTCCEEEEEET-TS--CEEEEETTTCCE
T ss_pred             ccccccc-----ccccccccCCCCCeEEEEcC-CC--eEEEeecccCcc
Confidence            2222222     1223334 456775555544 34  356667766653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.67  E-value=0.0026  Score=60.19  Aligned_cols=243  Identities=10%  Similarity=0.044  Sum_probs=117.3

Q ss_pred             ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEe--CCEEEEE-eCCCCc
Q 006979           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFS-NYKDQR  166 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s--~d~l~f~-~~~~~~  166 (623)
                      .+.++.+++++.||..+..     ...|..++.+  |+....++.........  ......+..  .+..++. ......
T Consensus        24 ~P~gvavd~dg~i~VaD~~-----n~rI~v~d~~--G~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~   94 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTN-----NHRIQIFDKE--GRFKFQFGECGKRDSQL--LYPNRVAVVRNSGDIIVTERSPTHQ   94 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGG-----GTEEEEECTT--SCEEEEECCBSSSTTCB--SSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             CccEEEEcCCCCEEEEECC-----CCEEEEEeCC--CCEEEEecccCCCcccc--cccccccccccccccceeccCCccc
Confidence            4567888876678877632     2335556654  33333232111100000  001112222  2233333 333446


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCC--C
Q 006979          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--D  244 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~--~  244 (623)
                      |.+++..+.  ..+.+...   ..........+++|+.+++ ...        ...+++++.++..   +..+....  .
T Consensus        95 i~~~~~~g~--~~~~~~~~---~~~~p~~~avd~~G~i~v~-~~~--------~~~~~~~~~~g~~---~~~~g~~~~~~  157 (279)
T d1q7fa_          95 IQIYNQYGQ--FVRKFGAT---ILQHPRGVTVDNKGRIIVV-ECK--------VMRVIIFDQNGNV---LHKFGCSKHLE  157 (279)
T ss_dssp             EEEECTTSC--EEEEECTT---TCSCEEEEEECTTSCEEEE-ETT--------TTEEEEECTTSCE---EEEEECTTTCS
T ss_pred             ccccccccc--ceeecCCC---cccccceeccccCCcEEEE-eec--------cceeeEeccCCce---eeccccccccc
Confidence            777776543  33333221   0122345678889975443 221        1467888877653   33332222  2


Q ss_pred             cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCe
Q 006979          245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF  324 (623)
Q Consensus       245 ~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~  324 (623)
                      ........++|+ |++....       ...|++++.++.    ....+. .. .....+..++.+++|++| +++. .+.
T Consensus       158 ~~~~i~~d~~g~-i~v~d~~-------~~~V~~~d~~G~----~~~~~g-~~-g~~~~P~giavD~~G~i~-Vad~-~~~  221 (279)
T d1q7fa_         158 FPNGVVVNDKQE-IFISDNR-------AHCVKVFNYEGQ----YLRQIG-GE-GITNYPIGVGINSNGEIL-IADN-HNN  221 (279)
T ss_dssp             SEEEEEECSSSE-EEEEEGG-------GTEEEEEETTCC----EEEEES-CT-TTSCSEEEEEECTTCCEE-EEEC-SSS
T ss_pred             ccceeeecccee-EEeeecc-------ccceeeeecCCc----eeeeec-cc-ccccCCcccccccCCeEE-EEEC-CCC
Confidence            233456888885 6655432       346888887654    222232 22 100234556788999855 4554 345


Q ss_pred             eeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEE
Q 006979          325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL  386 (623)
Q Consensus       325 ~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~  386 (623)
                      .+|.++++++.-.+.+... .....|      ..+++.    .++.||++. .+..-++|++
T Consensus       222 ~~v~~f~~~G~~~~~~~~~-~~~~~p------~~vav~----~dG~l~V~~-~n~~v~~fr~  271 (279)
T d1q7fa_         222 FNLTIFTQDGQLISALESK-VKHAQC------FDVALM----DDGSVVLAS-KDYRLYIYRY  271 (279)
T ss_dssp             CEEEEECTTSCEEEEEEES-SCCSCE------EEEEEE----TTTEEEEEE-TTTEEEEEEC
T ss_pred             cEEEEECCCCCEEEEEeCC-CCCCCE------eEEEEe----CCCcEEEEe-CCCeEEEEEe
Confidence            5688888754433444321 111111      223343    334566654 5666667765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=0.0025  Score=59.55  Aligned_cols=201  Identities=16%  Similarity=0.164  Sum_probs=103.0

Q ss_pred             CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCC-CCccceeeeecCCceEEEeCC-EEEEEeCCCCc
Q 006979           89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-EYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR  166 (623)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~-~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~  166 (623)
                      ..+.++.+++++.+|+++...  .++  +.+....  +........ ...      .  ....+++++ .+++.+...+ 
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~--~~~--i~~~~~~--~~~~~~~~~~~~~------~--p~gvav~~~g~i~v~d~~~~-   78 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGM--YGR--VVKLATG--STGTTVLPFNGLY------Q--PQGLAVDGAGTVYVTDFNNR-   78 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSS--SCE--EEEEC------CEEECCCCSCC------S--CCCEEECTTCCEEEEETTTE-
T ss_pred             CCCCEEEEcCCCCEEEEEcCC--CCE--EEEEcCC--CceEEEeccCCcc------C--ceEEEEcCCCCEEEeeeeec-
Confidence            456788898766788876432  233  5555544  222222221 110      0  123444444 5666654443 


Q ss_pred             EEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cCCCc
Q 006979          167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDF  245 (623)
Q Consensus       167 l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~~~~  245 (623)
                      +..+...+.  ........   ......+.+++++|+.+ +.....        ..+++++..+..   ..... .+...
T Consensus        79 ~i~~~~~~~--~~~~~~~~---~~~~p~~iavd~~g~i~-v~d~~~--------~~~~~~~~~~~~---~~~~~~~~~~~  141 (260)
T d1rwia_          79 VVTLAAGSN--NQTVLPFD---GLNYPEGLAVDTQGAVY-VADRGN--------NRVVKLAAGSKT---QTVLPFTGLND  141 (260)
T ss_dssp             EEEECTTCS--CCEECCCC---SCCSEEEEEECTTCCEE-EEEGGG--------TEEEEECTTCSS---CEECCCCSCCS
T ss_pred             eeeeeeecc--ceeeeeee---eeeecccccccccceeE-eecccc--------ccccccccccce---eeeeeecccCC
Confidence            444433332  23333321   01233567789999743 332211        457888877654   33322 22333


Q ss_pred             ccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCee
Q 006979          246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW  325 (623)
Q Consensus       246 ~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~  325 (623)
                      .....++|+|+ |++..+.       ..+|++++.++..    ........ -  ..+..+..+++|.|| +++.  +..
T Consensus       142 p~~i~~~~~g~-~~v~~~~-------~~~i~~~d~~~~~----~~~~~~~~-~--~~p~gi~~d~~g~l~-vsd~--~~~  203 (260)
T d1rwia_         142 PDGVAVDNSGN-VYVTDTD-------NNRVVKLEAESNN----QVVLPFTD-I--TAPWGIAVDEAGTVY-VTEH--NTN  203 (260)
T ss_dssp             CCEEEECTTCC-EEEEEGG-------GTEEEEECTTTCC----EEECCCSS-C--CSEEEEEECTTCCEE-EEET--TTT
T ss_pred             cceeeecCCCC-Eeeeccc-------cccccccccccce----eeeeeccc-c--CCCccceeeeeeeee-eeec--CCC
Confidence            44567899997 6555432       4468888876552    22222111 1  334567888898764 5555  345


Q ss_pred             eEEEEecCCCeEEE
Q 006979          326 NLHKWIESNNEVLA  339 (623)
Q Consensus       326 ~L~~~d~~~~~~~~  339 (623)
                      +|+++++++.....
T Consensus       204 ~i~~~~~~~~~~~~  217 (260)
T d1rwia_         204 QVVKLLAGSTTSTV  217 (260)
T ss_dssp             EEEEECTTCSCCEE
T ss_pred             EEEEEeCCCCeEEE
Confidence            68888876654333

>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Pancreatic lipase, N-terminal domain
domain: Pancreatic lipase, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=3.3e-05  Score=74.95  Aligned_cols=113  Identities=12%  Similarity=-0.007  Sum_probs=71.1

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHH-HcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHHHHHHhCCC
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK  570 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~-a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~~~l~~~~~  570 (623)
                      +...|+++++||.-..............| ....+.|+++|+.....  ..|..+....  ...-+.+...+++|.++..
T Consensus        67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~--~~Y~~a~~n~--~~Vg~~ia~~i~~l~~~~g  142 (338)
T d1bu8a2          67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSR--TEYTQASYNT--RVVGAEIAFLVQVLSTEMG  142 (338)
T ss_dssp             CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHS--SCHHHHHHHH--HHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhcc--cchHHHHHhH--HHHHHHHHHHHHHHHHhcC
Confidence            34579999999985444333333344444 44569999999864221  1233222110  1112334456677766555


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cCCCceeEEEecccCC
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVS  608 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~~  608 (623)
                      +++++|-++|||+|++++..+. ....++..+....|..
T Consensus       143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~  181 (338)
T d1bu8a2         143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE  181 (338)
T ss_dssp             CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred             CCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence            8899999999999999999998 4555566666665543

>d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: O-acetyltransferase
domain: Homoserine O-acetyltransferase
species: Leptospira interrogans [TaxId: 173]

Probab=97.58  E-value=0.00017  Score=71.15  Aligned_cols=113  Identities=17%  Similarity=0.185  Sum_probs=72.8

Q ss_pred             CCCCEEEEecCCCCCcccC----------cC-C---HHhHHHHcCceEEEEECCCCCCCC--chhHHHhhc-----cCCc
Q 006979          493 EKPPLLVKSHGGPTSEARG----------IL-N---LSIQYWTSRGWAFVDVNYGGSTGY--GREFRERLL-----GRWG  551 (623)
Q Consensus       493 ~~~Pliv~~hGg~~~~~~~----------~~-~---~~~~~~a~~G~~v~~~d~rGs~~~--g~~~~~~~~-----~~~g  551 (623)
                      .+-++||++|+-.+.....          .| .   ..-..+-..-|-|+++|.-|++..  |........     ..+.
T Consensus        40 ~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~~~ss~~~s~~p~~~~~yg~~fP  119 (362)
T d2pl5a1          40 SKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFP  119 (362)
T ss_dssp             TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSC
T ss_pred             CCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCcccccCccccccccccccCcCCc
Confidence            3458999999864332211          11 0   011122234499999999986531  221111110     1244


Q ss_pred             cchHHHHHHHHHHHHhCCCCCCCceE-EEEcChHHHHHHHHh-cCCCceeEEEecccC
Q 006979          552 IVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAAL-AFRDTFKAGASLYGV  607 (623)
Q Consensus       552 ~~~~~D~~~~~~~l~~~~~~d~~rv~-i~G~S~GG~~~~~~~-~~~~~f~a~v~~~g~  607 (623)
                      ...+.|++++-+-|.++=-|  +|+. |+|+||||+.++..+ .+|+.++.+|++++-
T Consensus       120 ~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~s  175 (362)
T d2pl5a1         120 FVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAST  175 (362)
T ss_dssp             CCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCC
T ss_pred             cchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccc
Confidence            56789999988877775224  5655 889999999999888 999999999998874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=0.00042  Score=69.22  Aligned_cols=146  Identities=10%  Similarity=0.043  Sum_probs=89.2

Q ss_pred             ceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCC--CCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 006979          148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA  225 (623)
Q Consensus       148 ~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~--~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~  225 (623)
                      .+.+++++.++++...|+.|.++|+.++ .....+...  ...........+|||||++|+....|...      ..+.+
T Consensus       188 ~~v~~s~dg~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~------~~i~l  260 (393)
T d1sq9a_         188 TSVDISERGLIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF------GCITL  260 (393)
T ss_dssp             CEEEECTTSEEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTE------EEEEE
T ss_pred             EEEEECCCCEEEEEeCCCcEEEEeeccc-ccccccccccccccccceEEEcccccccceeeeecCCCCc------ceeee
Confidence            4567777877778878889999999876 111222111  00012345678899999999887766422      45777


Q ss_pred             EEcCCCCcccceecc-------------cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEE
Q 006979          226 IALNGQNIQEPKVLV-------------SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV  292 (623)
Q Consensus       226 idl~~g~~~~~~~l~-------------~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~  292 (623)
                      +|+++++.  ...|.             .....+...+|||||++|+-...|        ..|.+.|++++.   ....+
T Consensus       261 wd~~~g~~--~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D--------~~v~vWd~~~g~---~~~~l  327 (393)
T d1sq9a_         261 YETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD--------GKLRFWDVKTKE---RITTL  327 (393)
T ss_dssp             EETTTCCE--EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT--------SEEEEEETTTTE---EEEEE
T ss_pred             ccccccee--eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC--------CEEEEEECCCCC---EEEEE
Confidence            78887752  22222             112345667899999988755533        348888998873   34445


Q ss_pred             cCCCCCccccCcCceeCCCCc
Q 006979          293 AGFDPTIVESPTEPKWSSKGE  313 (623)
Q Consensus       293 ~~~~~~~~~~~~~~~ws~DG~  313 (623)
                      .+...........+.|+++|.
T Consensus       328 ~gH~~~v~~~~~~~~~~~~~~  348 (393)
T d1sq9a_         328 NMHCDDIEIEEDILAVDEHGD  348 (393)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSC
T ss_pred             CCcCCcccCCccEEEECCCCC
Confidence            554411001223567889986

>d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases
domain: Picromycin polyketide synthase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.41  E-value=0.00023  Score=68.12  Aligned_cols=107  Identities=12%  Similarity=0.042  Sum_probs=65.7

Q ss_pred             CCCCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHH-HHHHHhCCC
Q 006979          492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGK  570 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~-~~~l~~~~~  570 (623)
                      +...|.+|++||...+.....|..++..|.. ++.|+.+|++|-+....     .........++++.+. ++.+.+.  
T Consensus        57 ~~~~~~l~c~~~~~~~g~~~~y~~la~~L~~-~~~V~al~~pG~~~~~~-----~~~~~~~~s~~~~a~~~~~~i~~~--  128 (283)
T d2h7xa1          57 AEGRAVLVGCTGTAANGGPHEFLRLSTSFQE-ERDFLAVPLPGYGTGTG-----TGTALLPADLDTALDAQARAILRA--  128 (283)
T ss_dssp             -CCCCEEEEECCCCTTCSTTTTHHHHHTTTT-TCCEEEECCTTCCBC--------CBCCEESSHHHHHHHHHHHHHHH--
T ss_pred             CCCCceEEEeCCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCCCCCCCC-----CccccccCCHHHHHHHHHHHHHHh--
Confidence            3445788889974323344466677777765 68999999999543221     1112222345555543 3444432  


Q ss_pred             CCCCceEEEEcChHHHHHHHHh-cC----CCceeEEEeccc
Q 006979          571 ADEKRLCITGGSAGGYTTLAAL-AF----RDTFKAGASLYG  606 (623)
Q Consensus       571 ~d~~rv~i~G~S~GG~~~~~~~-~~----~~~f~a~v~~~g  606 (623)
                      .+...+.++|||+||.+++.++ +.    +...++.|...+
T Consensus       129 ~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~  169 (283)
T d2h7xa1         129 AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDP  169 (283)
T ss_dssp             HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESC
T ss_pred             cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecC
Confidence            1235799999999999998887 42    456777776654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.31  E-value=0.046  Score=47.78  Aligned_cols=194  Identities=15%  Similarity=0.095  Sum_probs=110.9

Q ss_pred             CcEEEEeecCCCCCceEEEEcCCCCCCCCcccC-CCCCccceeeeecCCceEEEeCCEEEEEeCCCCcEEEEeCCCCCCC
Q 006979          100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSS  178 (623)
Q Consensus       100 ~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~-p~~~~~r~~~~~~g~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~  178 (623)
                      +.+-|++.-...+.+..|+..+...-|+..++- |.+  +|       +.+.+.++..++|+....++.+++-+++|  .
T Consensus        67 dfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~--vR-------I~S~~yddk~vvF~Gased~~~LYviegG--k  135 (313)
T d2hu7a1          67 GRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP--MR-------ILSGVDTGEAVVFTGATEDRVALYALDGG--G  135 (313)
T ss_dssp             SEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCS--BE-------EEEEEECSSCEEEEEECSSCEEEEEEETT--E
T ss_pred             ceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCce--EE-------EEEeeecCceEEEecccCCceEEEEEeCC--c
Confidence            456666544444455566655433112444432 322  22       34445455578888655554444444556  6


Q ss_pred             ceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEE
Q 006979          179 PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERM  258 (623)
Q Consensus       179 ~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~l  258 (623)
                      .+.|+..  ++..++.|.    .|++|+.+.--.+.     ...++..|+.+|.   .+.++.+.+..+++..+|+.|-+
T Consensus       136 lrkL~~v--PpFsFVtDI----~~d~I~G~g~~~g~-----~~sfF~adl~SG~---lri~tpkeGS~~~ay~~~gnKV~  201 (313)
T d2hu7a1         136 LRELARL--PGFGFVSDI----RGDLIAGLGFFGGG-----RVSLFTSNLSSGG---LRVFDSGEGSFSSASISPGMKVT  201 (313)
T ss_dssp             EEEEEEE--SSCEEEEEE----ETTEEEEEEEEETT-----EEEEEEEETTTEE---EEEECCSSEEEEEEEECTTSCEE
T ss_pred             eeeeccC--CCcceEEec----cCCeEEEEeeecCC-----cceEEEEecccCC---EEEecCCCCcccceeEccCceee
Confidence            7777764  234455553    47788877553332     2669999998888   88898888888889999988742


Q ss_pred             EEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCcccc---CcCceeCCCCcEEEEEeCCCCeeeEE
Q 006979          259 AWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES---PTEPKWSSKGELFFVTDRKNGFWNLH  328 (623)
Q Consensus       259 a~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ws~DG~l~~~~~~~~g~~~L~  328 (623)
                        ......    ..+.+..+|+..+.  -++.-+++.+ -....   +....+.||++|+.++.+ +|..+|+
T Consensus       202 --sdyEt~----gEsywit~D~~s~~--yerve~P~kd-~~sy~p~~I~~~~Y~Pdd~L~iiakr-dG~s~lF  264 (313)
T d2hu7a1         202 --AGLETA----REARLVTVDPRDGS--VEDLELPSKD-FSSYRPTAITWLGYLPDGRLAVVARR-EGRSAVF  264 (313)
T ss_dssp             --EEEEES----SCEEEEEECTTTCC--EEECCCSSCH-HHHHCCSEEEEEEECTTSCEEEEEEE-TTEEEEE
T ss_pred             --eccCCC----CceEEEEEecccCc--eeeeecCccc-ceeecceEEEeeeeCCCCcEEEEEec-CCchhee
Confidence              222222    13334445665542  1222233332 00011   223347899998888887 7888887

>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Thioesterases
domain: Palmitoyl protein thioesterase 1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.27  E-value=0.00043  Score=65.28  Aligned_cols=106  Identities=19%  Similarity=0.148  Sum_probs=61.4

Q ss_pred             CCCCCEEEEecCCCCCccc-CcCCHHhHHHHcC--ceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHHH-HHHHh
Q 006979          492 EEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCA-TFLVG  567 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~~-~~~~~~~~~~a~~--G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~~-~~l~~  567 (623)
                      ..+.|+| ++||-...... ..+.....++.++  |+.|..+++....   ........  +  ..+++..+.+ +.+.+
T Consensus         3 ~~P~PVV-LvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~---~~~~~~~~--~--~~~~~~~e~v~~~I~~   74 (279)
T d1ei9a_           3 PAPLPLV-IWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTL---REDVENSF--F--LNVNSQVTTVCQILAK   74 (279)
T ss_dssp             TSSCCEE-EECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSH---HHHHHHHH--H--SCHHHHHHHHHHHHHS
T ss_pred             CCCCcEE-EECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCc---ccccccch--h--hhHHHHHHHHHHHHHh
Confidence            3456755 69997443332 3455666666665  9999999975421   11111000  1  1233433333 34433


Q ss_pred             CCCCCCCceEEEEcChHHHHHHHHh-cCCC-ceeEEEeccc
Q 006979          568 SGKADEKRLCITGGSAGGYTTLAAL-AFRD-TFKAGASLYG  606 (623)
Q Consensus       568 ~~~~d~~rv~i~G~S~GG~~~~~~~-~~~~-~f~a~v~~~g  606 (623)
                      .+ .-.++|-++|||+||.++-.++ .+++ .+...|++.+
T Consensus        75 ~~-~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgs  114 (279)
T d1ei9a_          75 DP-KLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG  114 (279)
T ss_dssp             CG-GGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred             cc-ccccceeEEEEccccHHHHHHHHHcCCCCcceEEEECC
Confidence            22 2246899999999999999888 5543 4666776644

>d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases
domain: Erythromycin polyketide synthase
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.19  E-value=0.0008  Score=63.06  Aligned_cols=100  Identities=10%  Similarity=-0.023  Sum_probs=63.3

Q ss_pred             CCCEEEEecCCCCCcccCcCCHHhHHHHcCceEEEEECCCCCCCCchhHHHhhccCCccchHHHHHHH-HHHHHhCCCCC
Q 006979          494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKAD  572 (623)
Q Consensus       494 ~~Pliv~~hGg~~~~~~~~~~~~~~~~a~~G~~v~~~d~rGs~~~g~~~~~~~~~~~g~~~~~D~~~~-~~~l~~~~~~d  572 (623)
                      ..|.++++||...+.....|...+..|... +.|+.++.+|-+.. +         ....+++++.+. ++.+.+.  ..
T Consensus        41 ~~~~l~c~~~~~~gg~~~~y~~La~~L~~~-~~V~al~~pG~~~~-e---------~~~~s~~~~a~~~~~~i~~~--~~  107 (255)
T d1mo2a_          41 GEVTVICCAGTAAISGPHEFTRLAGALRGI-APVRAVPQPGYEEG-E---------PLPSSMAAVAAVQADAVIRT--QG  107 (255)
T ss_dssp             CSSEEEEECCCSSSCSGGGGHHHHHHHTTT-CCEEEECCTTSSTT-C---------CEESSHHHHHHHHHHHHHHT--TS
T ss_pred             CCCeEEEECCCCCCCCHHHHHHHHHhcCCC-ceEEEEeCCCcCCC-C---------CCCCCHHHHHHHHHHHHHHh--CC
Confidence            357888899742233444666777777664 89999999984321 1         112235555543 3445443  22


Q ss_pred             CCceEEEEcChHHHHHHHHh-c---CCCceeEEEeccc
Q 006979          573 EKRLCITGGSAGGYTTLAAL-A---FRDTFKAGASLYG  606 (623)
Q Consensus       573 ~~rv~i~G~S~GG~~~~~~~-~---~~~~f~a~v~~~g  606 (623)
                      ...+.++|||+||.++..++ +   .......++.+.+
T Consensus       108 ~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~  145 (255)
T d1mo2a_         108 DKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDV  145 (255)
T ss_dssp             SSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEEC
T ss_pred             CCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEECC
Confidence            35799999999999999887 3   2455666665544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.18  E-value=0.015  Score=53.85  Aligned_cols=193  Identities=16%  Similarity=0.127  Sum_probs=100.8

Q ss_pred             ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEeCC-EEEEEeCCCCcEE
Q 006979           90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY  168 (623)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s~d-~l~f~~~~~~~l~  168 (623)
                      .+.++.+++.+.+|+.+..     ...+......   ..+.+.+.. ...      .....+++.+ .+++.+....+++
T Consensus        58 ~p~gvav~~~g~i~v~d~~-----~~~i~~~~~~---~~~~~~~~~-~~~------~p~~iavd~~g~i~v~d~~~~~~~  122 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFN-----NRVVTLAAGS---NNQTVLPFD-GLN------YPEGLAVDTQGAVYVADRGNNRVV  122 (260)
T ss_dssp             SCCCEEECTTCCEEEEETT-----TEEEEECTTC---SCCEECCCC-SCC------SEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             CceEEEEcCCCCEEEeeee-----eceeeeeeec---cceeeeeee-eee------ecccccccccceeEeecccccccc
Confidence            4567888876678877622     2234333322   233333322 000      0123444444 6777776666788


Q ss_pred             EEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecc-cCCCccc
Q 006979          169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYA  247 (623)
Q Consensus       169 ~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~-~~~~~~~  247 (623)
                      +++..+.  .........   .....+..++|+|+ ++++....        ..|++++.++..   ...+. .......
T Consensus       123 ~~~~~~~--~~~~~~~~~---~~~p~~i~~~~~g~-~~v~~~~~--------~~i~~~d~~~~~---~~~~~~~~~~~p~  185 (260)
T d1rwia_         123 KLAAGSK--TQTVLPFTG---LNDPDGVAVDNSGN-VYVTDTDN--------NRVVKLEAESNN---QVVLPFTDITAPW  185 (260)
T ss_dssp             EECTTCS--SCEECCCCS---CCSCCEEEECTTCC-EEEEEGGG--------TEEEEECTTTCC---EEECCCSSCCSEE
T ss_pred             ccccccc--eeeeeeecc---cCCcceeeecCCCC-Eeeecccc--------ccccccccccce---eeeeeccccCCCc
Confidence            8887654  333332220   11224577899997 33333222        579999988764   33332 2223334


Q ss_pred             ceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeE
Q 006979          248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL  327 (623)
Q Consensus       248 ~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L  327 (623)
                      +.++++||+ |++..+.       ...|+.++.++.    ......... -  ..+...++++||.| |+++.  +..+|
T Consensus       186 gi~~d~~g~-l~vsd~~-------~~~i~~~~~~~~----~~~~~~~~~-~--~~P~~i~~d~~g~l-~vad~--~~~rI  247 (260)
T d1rwia_         186 GIAVDEAGT-VYVTEHN-------TNQVVKLLAGST----TSTVLPFTG-L--NTPLAVAVDSDRTV-YVADR--GNDRV  247 (260)
T ss_dssp             EEEECTTCC-EEEEETT-------TTEEEEECTTCS----CCEECCCCS-C--CCEEEEEECTTCCE-EEEEG--GGTEE
T ss_pred             cceeeeeee-eeeeecC-------CCEEEEEeCCCC----eEEEEccCC-C--CCeEEEEEeCCCCE-EEEEC--CCCEE
Confidence            567899986 6555422       345777765544    222322211 0  23456677888865 45555  33466


Q ss_pred             EEEec
Q 006979          328 HKWIE  332 (623)
Q Consensus       328 ~~~d~  332 (623)
                      .+++.
T Consensus       248 ~~i~~  252 (260)
T d1rwia_         248 VKLTS  252 (260)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            66654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.99  E-value=0.0058  Score=61.33  Aligned_cols=106  Identities=8%  Similarity=-0.134  Sum_probs=57.8

Q ss_pred             eCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC--CCC----
Q 006979          198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM--PWD----  271 (623)
Q Consensus       198 ~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~--p~~----  271 (623)
                      .+|||++|+.....+        ++|.++|+++.+..+...+..+.. .-+.++||||++++.....+...  |++    
T Consensus        79 gtpDGr~lfV~d~~~--------~rVavIDl~t~k~~~ii~iP~g~g-phgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          79 GRYDGKYLFINDKAN--------TRVARIRLDIMKTDKITHIPNVQA-IHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             TEEEEEEEEEEETTT--------TEEEEEETTTTEEEEEEECTTCCC-EEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             ccCCCCEEEEEcCCC--------CEEEEEECCCCcEeeEEecCCCCC-ccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            368998775543322        679999999987311112222222 23468999999877665433221  111    


Q ss_pred             ---c--eEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeC
Q 006979          272 ---K--AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR  320 (623)
Q Consensus       272 ---~--~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~  320 (623)
                         .  ..+-.+|..+...  ..++..+      ..+....++|||+.+|++..
T Consensus       150 ~~~~~~~~~~~iD~~t~~v--~~qI~v~------~~p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDV--AWQVIVD------GNLDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSE--EEEEEES------SCCCCEEECSSSSEEEEEES
T ss_pred             ccccccceEEeecCcccee--eEEEecC------CCccceEECCCCCEEEEEec
Confidence               1  1223344443321  2223333      23568999999995555543

>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PHB depolymerase-like
domain: Polyhydroxybutyrate depolymerase
species: Penicillium funiculosum [TaxId: 28572]

Probab=96.99  E-value=0.0001  Score=71.41  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             CCCCCCceEEEEcChHHHHHHHHh-cCCCceeEEEec
Q 006979          569 GKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASL  604 (623)
Q Consensus       569 ~~~d~~rv~i~G~S~GG~~~~~~~-~~~~~f~a~v~~  604 (623)
                      -.+||+||+|+|+|+||+|++.++ .+|++|++++++
T Consensus         6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~v   42 (318)
T d2d81a1           6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGV   42 (318)
T ss_dssp             CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEE
T ss_pred             cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEE
Confidence            358999999999999999999888 899999865544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.009  Score=56.81  Aligned_cols=180  Identities=11%  Similarity=0.121  Sum_probs=100.1

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      +++....++.+..+|+.++ .........    ........++|+++.++....+         ..|.++|+.++..  .
T Consensus       173 ~~~~~~~d~~i~~~d~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~--~  236 (355)
T d1nexb2         173 IVVSGSYDNTLIVWDVAQM-KCLYILSGH----TDRIYSTIYDHERKRCISASMD---------TTIRIWDLENGEL--M  236 (355)
T ss_dssp             EEEEEETTSCEEEEETTTT-EEEEEECCC----SSCEEEEEEETTTTEEEEEETT---------SCEEEEETTTCCE--E
T ss_pred             eeeeecccceeeeeecccc-cceeeeecc----ccccccccccccceeeeccccc---------ceEEeeecccccc--c
Confidence            4444556777999998765 112222221    2344567799999988776554         4588889988762  2


Q ss_pred             eecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEE
Q 006979          237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF  316 (623)
Q Consensus       237 ~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~  316 (623)
                      ..+......+....|+  +++|+....|        ..|.+.|+....    ........    ....-..++++++++.
T Consensus       237 ~~~~~h~~~v~~~~~~--~~~l~~~~~d--------g~i~iwd~~~~~----~~~~~~~~----~~~~~~~~~~~~~~l~  298 (355)
T d1nexb2         237 YTLQGHTALVGLLRLS--DKFLVSAAAD--------GSIRGWDANDYS----RKFSYHHT----NLSAITTFYVSDNILV  298 (355)
T ss_dssp             EEECCCSSCCCEEEEC--SSEEEEECTT--------SEEEEEETTTCC----EEEEEECT----TCCCCCEEEECSSEEE
T ss_pred             cccccccccccccccc--cceeeeeecc--------cccccccccccc----eecccccC----CceEEEEEcCCCCEEE
Confidence            3333323334444554  5667655422        348888887652    22222111    1222335667777665


Q ss_pred             EEeCCCCeeeEEEEecCCCeEEE-Ee-ecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          317 VTDRKNGFWNLHKWIESNNEVLA-IY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       317 ~~~~~~g~~~L~~~d~~~~~~~~-l~-~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      ...+  +  .|..+|..+++... .. .....+.         .+.+     .++.++++..++|...|+.+|.
T Consensus       299 ~g~d--~--~i~vwd~~tg~~~~~~~~~~~~~V~---------~v~~-----~~~~~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         299 SGSE--N--QFNIYNLRSGKLVHANILKDADQIW---------SVNF-----KGKTLVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             EEET--T--EEEEEETTTCCBCCSCTTTTCSEEE---------EEEE-----ETTEEEEEEESSSCEEEEEEEC
T ss_pred             EEeC--C--EEEEEECCCCCEEEEEecCCCCCEE---------EEEE-----cCCeEEEEEECCCcEEEEEEeC
Confidence            5543  4  46677887776321 11 1111111         2233     2346777777889888888874

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.87  E-value=0.0077  Score=60.40  Aligned_cols=102  Identities=11%  Similarity=-0.022  Sum_probs=58.7

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEe--ccCCC--------CCCceeEEEE
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE--DRRQD--------ALNSTTEIVA  225 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~--~~~~~--------~~~~~~~L~~  225 (623)
                      .+++.+..+++|.++|+++.  +..++..-+  ........+++|||+++++...  +.-..        .......+-.
T Consensus        85 ~lfV~d~~~~rVavIDl~t~--k~~~ii~iP--~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          85 YLFINDKANTRVARIRLDIM--KTDKITHIP--NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EEEEEETTTTEEEEEETTTT--EEEEEEECT--TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCC--cEeeEEecC--CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            56666777888999999987  444332210  0112334679999996554432  21100        0112344566


Q ss_pred             EEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEec
Q 006979          226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWH  264 (623)
Q Consensus       226 idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~  264 (623)
                      +|..+.+.  ..++.-+. ......+||||+++++...+
T Consensus       161 iD~~t~~v--~~qI~v~~-~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         161 IDAETMDV--AWQVIVDG-NLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EETTTCSE--EEEEEESS-CCCCEEECSSSSEEEEEESC
T ss_pred             ecCcccee--eEEEecCC-CccceEECCCCCEEEEEecC
Confidence            88877653  23333222 23457899999998877654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.0073  Score=59.70  Aligned_cols=122  Identities=10%  Similarity=0.023  Sum_probs=72.7

Q ss_pred             ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccee------cccCCCcccceeeCCCCCEEEEEEecCC
Q 006979          193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV------LVSGSDFYAFPRMDPRGERMAWIEWHHP  266 (623)
Q Consensus       193 ~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~------l~~~~~~~~~p~wSPDG~~la~~~~~~~  266 (623)
                      .....|+||| .|+ +....        ..|.++|+.+++.  ...      +....+.+...+|||||+.|+-...|..
T Consensus       187 ~~~v~~s~dg-~la-sgs~D--------g~i~iwd~~~~~~--~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t  254 (393)
T d1sq9a_         187 ATSVDISERG-LIA-TGFNN--------GTVQISELSTLRP--LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS  254 (393)
T ss_dssp             CCEEEECTTS-EEE-EECTT--------SEEEEEETTTTEE--EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT
T ss_pred             EEEEEECCCC-EEE-EEeCC--------CcEEEEeeccccc--ccccccccccccccceEEEcccccccceeeeecCCCC
Confidence            3457799998 443 33221        5688889987752  111      2222344566789999999987765542


Q ss_pred             CCCCCceEEEEEEecCCCceeeeEEEc-------------CCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecC
Q 006979          267 NMPWDKAELWVGYISENGDVYKRVCVA-------------GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES  333 (623)
Q Consensus       267 ~~p~~~~~L~v~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~  333 (623)
                           ...|.++|++.+..   ...+.             +..    ..+....|+|||++++.... ++.  |..+|.+
T Consensus       255 -----~~~i~lwd~~~g~~---~~~l~~~~~~~~~~~~~~gH~----~~V~~l~fspd~~~l~S~s~-D~~--v~vWd~~  319 (393)
T d1sq9a_         255 -----FGCITLYETEFGER---IGSLSVPTHSSQASLGEFAHS----SWVMSLSFNDSGETLCSAGW-DGK--LRFWDVK  319 (393)
T ss_dssp             -----EEEEEEEETTTCCE---EEEECBC--------CCBSBS----SCEEEEEECSSSSEEEEEET-TSE--EEEEETT
T ss_pred             -----cceeeeccccccee---eeeeccccccccceeeeeccc----CceeeeccCCCCCeeEEECC-CCE--EEEEECC
Confidence                 34577778877632   11121             122    34567899999996655544 454  5555777


Q ss_pred             CCeEEEEe
Q 006979          334 NNEVLAIY  341 (623)
Q Consensus       334 ~~~~~~l~  341 (623)
                      +++.....
T Consensus       320 ~g~~~~~l  327 (393)
T d1sq9a_         320 TKERITTL  327 (393)
T ss_dssp             TTEEEEEE
T ss_pred             CCCEEEEE
Confidence            88654433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.21  Score=46.52  Aligned_cols=174  Identities=10%  Similarity=0.026  Sum_probs=91.3

Q ss_pred             eCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEE
Q 006979          198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV  277 (623)
Q Consensus       198 ~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v  277 (623)
                      +.++++.++....+         ..+...|+.+++.  ...............|+|++++++....+.        .|.+
T Consensus       167 ~~~~~~~~~~~~~d---------~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------~i~i  227 (355)
T d1nexb2         167 VSGHGNIVVSGSYD---------NTLIVWDVAQMKC--LYILSGHTDRIYSTIYDHERKRCISASMDT--------TIRI  227 (355)
T ss_dssp             EEEETTEEEEEETT---------SCEEEEETTTTEE--EEEECCCSSCEEEEEEETTTTEEEEEETTS--------CEEE
T ss_pred             cccccceeeeeccc---------ceeeeeecccccc--eeeeeccccccccccccccceeeecccccc--------eEEe
Confidence            44566655554332         3477778877651  222222333345567999999887765332        3888


Q ss_pred             EEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCc
Q 006979          278 GYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGIN  357 (623)
Q Consensus       278 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~  357 (623)
                      +++..+.   ....+.+..    ..+....|+  +++++.... +|.  |..+|..+.... +...........      
T Consensus       228 ~d~~~~~---~~~~~~~h~----~~v~~~~~~--~~~l~~~~~-dg~--i~iwd~~~~~~~-~~~~~~~~~~~~------  288 (355)
T d1nexb2         228 WDLENGE---LMYTLQGHT----ALVGLLRLS--DKFLVSAAA-DGS--IRGWDANDYSRK-FSYHHTNLSAIT------  288 (355)
T ss_dssp             EETTTCC---EEEEECCCS----SCCCEEEEC--SSEEEEECT-TSE--EEEEETTTCCEE-EEEECTTCCCCC------
T ss_pred             eeccccc---ccccccccc----ccccccccc--cceeeeeec-ccc--ccccccccccee-cccccCCceEEE------
Confidence            8887763   333444443    345566665  454544444 454  555677665433 222211221111      


Q ss_pred             ceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCcee--ecccCCcceEeeeecCCEEEEEEe
Q 006979          358 SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS--LLDIPFTDIDNITLGNDCLFVEGA  418 (623)
Q Consensus       358 ~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~~--~lt~~~~~v~~~~~~~~~~~~~~~  418 (623)
                         +++   .++.++.+. .++  .|.++|+.+++..  .+......+..+..+++.+++.++
T Consensus       289 ---~~~---~~~~~l~~g-~d~--~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s  342 (355)
T d1nexb2         289 ---TFY---VSDNILVSG-SEN--QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVE  342 (355)
T ss_dssp             ---EEE---ECSSEEEEE-ETT--EEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEE
T ss_pred             ---EEc---CCCCEEEEE-eCC--EEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEE
Confidence               111   334455554 355  4666788877653  233333446556445566655444

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.014  Score=54.20  Aligned_cols=157  Identities=6%  Similarity=-0.022  Sum_probs=81.4

Q ss_pred             eEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 006979          149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL  228 (623)
Q Consensus       149 ~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl  228 (623)
                      .+.+.++.+++....++.+.++++... .....+...   ........+|+|+|++|+....+         ..+.++|+
T Consensus       125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~-~~~~~~~~~---~~~~v~~~~~s~~~~~l~~g~~d---------g~i~i~d~  191 (287)
T d1pgua2         125 AVSLSQNYVAVGLEEGNTIQVFKLSDL-EVSFDLKTP---LRAKPSYISISPSETYIAAGDVM---------GKILLYDL  191 (287)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEE-EEEEECSSC---CSSCEEEEEECTTSSEEEEEETT---------SCEEEEET
T ss_pred             eeeccCcceeeeccccceeeeeecccc-ceeeeeeec---cCCceeEEEeccCcccccccccc---------ccccceee
Confidence            445555566666555556888887543 112222221   12345678899999988776543         45888898


Q ss_pred             CCCCccccee--cccCCCcccceeeCCCCCEEEEEEecCCCC--CCCceEEEEEEecCCCceeeeEEEcCCCCCccccCc
Q 006979          229 NGQNIQEPKV--LVSGSDFYAFPRMDPRGERMAWIEWHHPNM--PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT  304 (623)
Q Consensus       229 ~~g~~~~~~~--l~~~~~~~~~p~wSPDG~~la~~~~~~~~~--p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  304 (623)
                      .++.   ...  +......+....|+|+++.......+..-+  .-....|++.++.....  ....+.+..    ..+.
T Consensus       192 ~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--~~~~~~~h~----~~V~  262 (287)
T d1pgua2         192 QSRE---VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--IIKALNAHK----DGVN  262 (287)
T ss_dssp             TTTE---EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--CEEETTSST----TCEE
T ss_pred             cccc---cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe--EEEEeCCCC----CCeE
Confidence            8775   221  111122344566887665322211110000  00012378888866432  233333444    4677


Q ss_pred             CceeCCCCcEEEEEeCCCCeeeEEE
Q 006979          305 EPKWSSKGELFFVTDRKNGFWNLHK  329 (623)
Q Consensus       305 ~~~ws~DG~l~~~~~~~~g~~~L~~  329 (623)
                      ...|++|++++-.. . ++.-+||.
T Consensus       263 ~v~~~~~~~l~s~g-~-D~~v~iW~  285 (287)
T d1pgua2         263 NLLWETPSTLVSSG-A-DACIKRWN  285 (287)
T ss_dssp             EEEEEETTEEEEEE-T-TSCEEEEE
T ss_pred             EEEECCCCEEEEEE-C-CCeEEEEE
Confidence            88999998644333 3 46656654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.022  Score=52.93  Aligned_cols=182  Identities=10%  Similarity=-0.048  Sum_probs=88.1

Q ss_pred             eeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEE
Q 006979          196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL  275 (623)
Q Consensus       196 ~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L  275 (623)
                      ..+++++..++.. .+         ..+.+++..+++.  ...+....   ..-.++|+++.++....+.       ..+
T Consensus        86 ~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~v~~~~~-------~~v  143 (287)
T d1pgua2          86 ASANNDGFTAVLT-ND---------DDLLILQSFTGDI--IKSVRLNS---PGSAVSLSQNYVAVGLEEG-------NTI  143 (287)
T ss_dssp             EEECSSSEEEEEE-TT---------SEEEEEETTTCCE--EEEEECSS---CEEEEEECSSEEEEEETTT-------SCE
T ss_pred             eeeccCCceEEEe-ec---------ccceeeeccceee--eeeccccc---eeeeeeccCcceeeecccc-------cee
Confidence            4567787655443 21         4577778777652  22222221   1235789999887665332       226


Q ss_pred             EEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEE--eeccccccccccc
Q 006979          276 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI--YSLDAEFSRPLWV  353 (623)
Q Consensus       276 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l--~~~~~~~~~~~w~  353 (623)
                      .++++....   ......... .  ..+....|+|||++++.... +|.  +..+|..+++....  ......+....|.
T Consensus       144 ~~~~~~~~~---~~~~~~~~~-~--~~v~~~~~s~~~~~l~~g~~-dg~--i~i~d~~~~~~~~~~~~~h~~~v~~~~~~  214 (287)
T d1pgua2         144 QVFKLSDLE---VSFDLKTPL-R--AKPSYISISPSETYIAAGDV-MGK--ILLYDLQSREVKTSRWAFRTSKINAISWK  214 (287)
T ss_dssp             EEEETTEEE---EEEECSSCC-S--SCEEEEEECTTSSEEEEEET-TSC--EEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred             eeeeccccc---eeeeeeecc-C--CceeEEEeccCccccccccc-ccc--ccceeecccccccccccccccccceeeec
Confidence            666665431   111121111 1  34567899999996555554 454  55567666653321  1112223333444


Q ss_pred             ccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCC--CceeecccCCcceEee-eecCCEE
Q 006979          354 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG--HSLSLLDIPFTDIDNI-TLGNDCL  413 (623)
Q Consensus       354 ~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~--~~~~~lt~~~~~v~~~-~~~~~~~  413 (623)
                      +.........   .+..++++...++.-+||  |+..  ..++.+......+..+ ..+++++
T Consensus       215 p~~~~~~~~~---~~~~~l~sgs~D~~i~iw--~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l  272 (287)
T d1pgua2         215 PAEKGANEEE---IEEDLVATGSLDTNIFIY--SVKRPMKIIKALNAHKDGVNNLLWETPSTL  272 (287)
T ss_dssp             CCC------C---CSCCEEEEEETTSCEEEE--ESSCTTCCEEETTSSTTCEEEEEEEETTEE
T ss_pred             cccccccccc---CCCCeeEeecCCCeEEEE--ECCCCCeEEEEeCCCCCCeEEEEECCCCEE
Confidence            3222211111   233455566667765554  5433  3344444334446555 2234453

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.27  Score=45.35  Aligned_cols=286  Identities=11%  Similarity=-0.001  Sum_probs=127.7

Q ss_pred             CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccceeeeecCCceEEEe--CCEEEEEeCCCC
Q 006979           89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKDQ  165 (623)
Q Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~e~g~~~l~~~~~~~gg~~~~l~p~~~~~r~~~~~~g~~~~~~s--~d~l~f~~~~~~  165 (623)
                      ..+..+.|+| +..|. .-.   .+|...||.....  .....+...      .-|...+.+.+++  .+.++++...++
T Consensus        12 d~I~~l~fsp~~~~L~-s~s---~Dg~v~iwd~~~~--~~~~~~~~~------~~h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLL-ITS---WDGSLTVYKFDIQ--AKNVDLLQS------LRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             SCEEEEEEEGGGTEEE-EEE---TTSEEEEEEEETT--TTEEEEEEE------EECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             CCEEEEEEeCCCCEEE-EEE---CCCeEEEEEccCC--CcceEEEEe------cCCCCCEEEEEEeCCCCCEEEEccccc
Confidence            4567899999 55443 332   2577778866543  122221110      0122223444444  346777777888


Q ss_pred             cEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccce--ecccC-
Q 006979          166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK--VLVSG-  242 (623)
Q Consensus       166 ~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~--~l~~~-  242 (623)
                      .+.++++..+ ..........   ........+.+++..++....+         ..+.++|+.++......  .+... 
T Consensus        80 ~v~~w~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---------~~~~~wd~~~~~~~~~~~~~~~~~~  146 (342)
T d1yfqa_          80 EILKVDLIGS-PSFQALTNNE---ANLGICRICKYGDDKLIAASWD---------GLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             CEEEECSSSS-SSEEECBSCC---CCSCEEEEEEETTTEEEEEETT---------SEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             ceeeeecccc-cccccccccc---cccccccccccccccccccccc---------cccceeeccccccceeeeccccccc
Confidence            8999998765 2222222210   1111122345566666554443         44666676543210010  11111 


Q ss_pred             -CCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCC-CcEEEEEeC
Q 006979          243 -SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK-GELFFVTDR  320 (623)
Q Consensus       243 -~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~D-G~l~~~~~~  320 (623)
                       ........+++++..++....+        ..+.++++................    .......+.+. +..+.....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~d--------~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~  214 (342)
T d1yfqa_         147 TKVKNKIFTMDTNSSRLIVGMNN--------SQVQWFRLPLCEDDNGTIEESGLK----YQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             SSSCCCEEEEEECSSEEEEEEST--------TEEEEEESSCCTTCCCEEEECSCS----SCEEEEEECSGGGCEEEEEET
T ss_pred             ccceeeeeeeeccCCceeeecCC--------CcEEEEecccCcccceeeeecccc----cceeeeEeecCCCCEEEeecC
Confidence             1112223567888877665532        247777876653211222222211    11222334443 334444443


Q ss_pred             CCCeeeEEEEecCCCe-----EEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeCCCCce-e
Q 006979          321 KNGFWNLHKWIESNNE-----VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-S  394 (623)
Q Consensus       321 ~~g~~~L~~~d~~~~~-----~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~~~~~~-~  394 (623)
                       +|...++.++.....     ...+..................+.|.   |+++. +++...+|.-+|  .|+++++. .
T Consensus       215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s---p~~~~-lasg~~Dg~v~v--WD~~~~~~l~  287 (342)
T d1yfqa_         215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS---PRHKF-LYTAGSDGIISC--WNLQTRKKIK  287 (342)
T ss_dssp             -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC---TTTCC-EEEEETTSCEEE--EETTTTEEEE
T ss_pred             -CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEec---CCccE-EEEECCCCEEEE--EECCCCcEEE
Confidence             466556555432211     11111000000000000011123333   36664 455556676554  57776654 3


Q ss_pred             ecccCC-cceEeeeecCCEEEEEEe
Q 006979          395 LLDIPF-TDIDNITLGNDCLFVEGA  418 (623)
Q Consensus       395 ~lt~~~-~~v~~~~~~~~~~~~~~~  418 (623)
                      .+.... ..+..++++++.+++..+
T Consensus       288 ~~~~~~~~~~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         288 NFAKFNEDSVVKIACSDNILCLATS  312 (342)
T ss_dssp             ECCCCSSSEEEEEEECSSEEEEEEE
T ss_pred             EecCCCCCEEEEEEeCCCEEEEEEc
Confidence            443322 224455777776655444

>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Serine carboxypeptidase-like
domain: Human 'protective protein', HPP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.015  Score=58.80  Aligned_cols=135  Identities=12%  Similarity=0.094  Sum_probs=84.9

Q ss_pred             eecCCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc--------------C--CHHhHHHHcCceEEEE
Q 006979          466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI--------------L--NLSIQYWTSRGWAFVD  529 (623)
Q Consensus       466 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~--------------~--~~~~~~~a~~G~~v~~  529 (623)
                      +... ++..+..|++...+.      .+..|+++++.|||+......              .  .....-|.+. ..+|-
T Consensus        26 l~~~-~~~~lffw~~~s~~~------~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~-anllf   97 (452)
T d1ivya_          26 LKSS-GSKHLHYWFVESQKD------PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLI-ANVLY   97 (452)
T ss_dssp             EECS-TTEEEEEEEECCSSC------GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGS-SEEEE
T ss_pred             eecC-CCceEEEEEEEcCCC------CCCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcc-cCEEE
Confidence            4444 677899888876541      356799999999997544210              0  0122335555 57888


Q ss_pred             ECCCCCCCCchhHHHhhccCCcc---chHHHHHHHH-HHHHhCCCCCCCceEEEEcChHHHHHHHHh-c---C-CCceeE
Q 006979          530 VNYGGSTGYGREFRERLLGRWGI---VDVNDCCSCA-TFLVGSGKADEKRLCITGGSAGGYTTLAAL-A---F-RDTFKA  600 (623)
Q Consensus       530 ~d~rGs~~~g~~~~~~~~~~~g~---~~~~D~~~~~-~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~---~-~~~f~a  600 (623)
                      +|.+=++|+...-    ......   ....|+..++ +++...+.....++.|.|-||||..+-.++ .   . .-.+++
T Consensus        98 IDqPvGtGfS~~~----~~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~G  173 (452)
T d1ivya_          98 LESPAGVGFSYSD----DKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQG  173 (452)
T ss_dssp             ECCSTTSTTCEES----SCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEE
T ss_pred             EecCCCcccccCC----CCCCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccc
Confidence            8976444454321    111111   1245554544 466666555567999999999999877665 2   2 235899


Q ss_pred             EEecccCCCHHH
Q 006979          601 GASLYGVSIPVI  612 (623)
Q Consensus       601 ~v~~~g~~d~~~  612 (623)
                      ++...|+.|...
T Consensus       174 i~igng~~d~~~  185 (452)
T d1ivya_         174 LAVGNGLSSYEQ  185 (452)
T ss_dssp             EEEESCCSBHHH
T ss_pred             eEcCCCccCchh
Confidence            999999998653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.66  E-value=0.79  Score=41.97  Aligned_cols=207  Identities=13%  Similarity=0.064  Sum_probs=100.6

Q ss_pred             EEEeCC-EEEEEeCCCCcEEEEeCCCCCCCceecCCCC--CCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          150 FRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       150 ~~~s~d-~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~--~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      .+++++ .|++.+....+|.++|.++.  ..+.+....  +.....-.+..+.++...++++....       ...|.++
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~~G~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~i~~~   98 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-------THQIQIY   98 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-------GCEEEEE
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeCCCC--EEEEecccCCCcccccccccccccccccccceeccCC-------ccccccc
Confidence            445444 67777766778999987643  333332210  00111112334455544444443321       2567888


Q ss_pred             EcCCCCcccceeccc-CCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcC
Q 006979          227 ALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE  305 (623)
Q Consensus       227 dl~~g~~~~~~~l~~-~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (623)
                      +.++..   .+.+.. ........+..++|+ +++....       ..++++++.++.    ....+....  .......
T Consensus        99 ~~~g~~---~~~~~~~~~~~p~~~avd~~G~-i~v~~~~-------~~~~~~~~~~g~----~~~~~g~~~--~~~~~~~  161 (279)
T d1q7fa_          99 NQYGQF---VRKFGATILQHPRGVTVDNKGR-IIVVECK-------VMRVIIFDQNGN----VLHKFGCSK--HLEFPNG  161 (279)
T ss_dssp             CTTSCE---EEEECTTTCSCEEEEEECTTSC-EEEEETT-------TTEEEEECTTSC----EEEEEECTT--TCSSEEE
T ss_pred             cccccc---eeecCCCcccccceeccccCCc-EEEEeec-------cceeeEeccCCc----eeecccccc--cccccce
Confidence            876553   333321 112233456788887 4444321       345777665433    222221111  0133445


Q ss_pred             ceeCCCCcEEEEEeCCCCeeeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEE
Q 006979          306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI  385 (623)
Q Consensus       306 ~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~  385 (623)
                      +...++|.+|+ ++.  ....|+++|+++.....+-. ...+..|      ..+.+-   ++|+ +|++.. .+..+|.+
T Consensus       162 i~~d~~g~i~v-~d~--~~~~V~~~d~~G~~~~~~g~-~g~~~~P------~giavD---~~G~-i~Vad~-~~~~~v~~  226 (279)
T d1q7fa_         162 VVVNDKQEIFI-SDN--RAHCVKVFNYEGQYLRQIGG-EGITNYP------IGVGIN---SNGE-ILIADN-HNNFNLTI  226 (279)
T ss_dssp             EEECSSSEEEE-EEG--GGTEEEEEETTCCEEEEESC-TTTSCSE------EEEEEC---TTCC-EEEEEC-SSSCEEEE
T ss_pred             eeeccceeEEe-eec--cccceeeeecCCceeeeecc-cccccCC------cccccc---cCCe-EEEEEC-CCCcEEEE
Confidence            66778886654 444  34568888987655444421 1111111      223332   2554 666532 33446778


Q ss_pred             EeCCCCceeecc
Q 006979          386 LDDFGHSLSLLD  397 (623)
Q Consensus       386 ~d~~~~~~~~lt  397 (623)
                      ++.++.-++.+.
T Consensus       227 f~~~G~~~~~~~  238 (279)
T d1q7fa_         227 FTQDGQLISALE  238 (279)
T ss_dssp             ECTTSCEEEEEE
T ss_pred             ECCCCCEEEEEe
Confidence            887755455443

>d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Bacterial lipase
domain: Lipase L1
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.60  E-value=0.017  Score=56.62  Aligned_cols=42  Identities=14%  Similarity=0.169  Sum_probs=26.9

Q ss_pred             CCCCCEEEEecCCCCCcc-----cCcCC----HHhHHHHcCceEEEEECCCC
Q 006979          492 EEKPPLLVKSHGGPTSEA-----RGILN----LSIQYWTSRGWAFVDVNYGG  534 (623)
Q Consensus       492 ~~~~Pliv~~hGg~~~~~-----~~~~~----~~~~~~a~~G~~v~~~d~rG  534 (623)
                      ..++|+|| +||-.+...     ...|.    ...+.|.+.|+.|+.++...
T Consensus         5 ~~~yPIVL-vHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p   55 (388)
T d1ku0a_           5 ANDAPIVL-LHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGP   55 (388)
T ss_dssp             CCCCCEEE-ECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCS
T ss_pred             CCCCCEEE-eCCcccCCccccCcccccCCchhhhHHHHHhCCCEEEEeccCC
Confidence            45578665 899532211     11222    25777889999999999754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.58  Score=43.01  Aligned_cols=185  Identities=11%  Similarity=0.042  Sum_probs=92.9

Q ss_pred             EEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccee
Q 006979          159 FSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV  238 (623)
Q Consensus       159 f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~  238 (623)
                      +....++.+.++++... .....+...    .  .....+++++++++....+         +.|.++|+..++.  +..
T Consensus       151 ~~~~~d~~i~~~d~~~~-~~~~~~~~~----~--~~~~~~~~~~~~l~s~~~d---------g~i~~~d~~~~~~--~~~  212 (342)
T d2ovrb2         151 VSGAYDFMVKVWDPETE-TCLHTLQGH----T--NRVYSLQFDGIHVVSGSLD---------TSIRVWDVETGNC--IHT  212 (342)
T ss_dssp             EEEETTSCEEEEEGGGT-EEEEEECCC----S--SCEEEEEECSSEEEEEETT---------SCEEEEETTTCCE--EEE
T ss_pred             eeecCCCeEEEeecccc-eeeEEEcCc----c--cccccccCCCCEEEEEeCC---------CeEEEeeccccee--eeE
Confidence            33445667888887643 112222221    1  1223466788887765544         4588889888762  222


Q ss_pred             cccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEE
Q 006979          239 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT  318 (623)
Q Consensus       239 l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~  318 (623)
                      +.......  ..+++++++|+-...+        ..|+++++....   ....+.... .  ....-..++.++++++..
T Consensus       213 ~~~~~~~v--~~~~~~~~~l~s~s~d--------~~i~iwd~~~~~---~~~~~~~~~-~--~~~~~~~~~~~~~~~~s~  276 (342)
T d2ovrb2         213 LTGHQSLT--SGMELKDNILVSGNAD--------STVKIWDIKTGQ---CLQTLQGPN-K--HQSAVTCLQFNKNFVITS  276 (342)
T ss_dssp             ECCCCSCE--EEEEEETTEEEEEETT--------SCEEEEETTTCC---EEEEECSTT-S--CSSCEEEEEECSSEEEEE
T ss_pred             ecccccce--eEEecCCCEEEEEcCC--------CEEEEEeccccc---ccccccccc-e--eeeceeecccCCCeeEEE
Confidence            33222223  3466777877655533        238888887663   333343322 1  111222344456655555


Q ss_pred             eCCCCeeeEEEEecCCCeE-EEEeeccc-ccccccccccCcceeEEeecCCCCEEEEEEEECC--eEEEEEEeCC
Q 006979          319 DRKNGFWNLHKWIESNNEV-LAIYSLDA-EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG--RSYLGILDDF  389 (623)
Q Consensus       319 ~~~~g~~~L~~~d~~~~~~-~~l~~~~~-~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g--~~~L~~~d~~  389 (623)
                      .. +|  .|..+|+.+++. +.+..... ....+-     ....+.    +++.++.+...+|  ..+|+++|.+
T Consensus       277 s~-Dg--~i~iwd~~tg~~i~~~~~~~~~~~~~~v-----~~v~~s----~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         277 SD-DG--TVKLWDLKTGEFIRNLVTLESGGSGGVV-----WRIRAS----NTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             ET-TS--EEEEEETTTCCEEEEEEECTTGGGTCEE-----EEEEEC----SSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             cC-CC--EEEEEECCCCCEEEEEecccCCCCCCCE-----EEEEEC----CCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            44 45  466678777764 34432211 111111     122332    3345555555666  3567777765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.076  Score=49.57  Aligned_cols=148  Identities=11%  Similarity=-0.060  Sum_probs=79.8

Q ss_pred             EEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 006979          157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP  236 (623)
Q Consensus       157 l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~  236 (623)
                      .+++...++.|.++|+..+ .....+...    .....  .+++++++++....+         ..|.++|+...+.  .
T Consensus       189 ~l~s~~~dg~i~~~d~~~~-~~~~~~~~~----~~~v~--~~~~~~~~l~s~s~d---------~~i~iwd~~~~~~--~  250 (342)
T d2ovrb2         189 HVVSGSLDTSIRVWDVETG-NCIHTLTGH----QSLTS--GMELKDNILVSGNAD---------STVKIWDIKTGQC--L  250 (342)
T ss_dssp             EEEEEETTSCEEEEETTTC-CEEEEECCC----CSCEE--EEEEETTEEEEEETT---------SCEEEEETTTCCE--E
T ss_pred             EEEEEeCCCeEEEeecccc-eeeeEeccc----cccee--EEecCCCEEEEEcCC---------CEEEEEecccccc--c
Confidence            4455567888999999866 222233321    11222  355666777665543         4588889877651  2


Q ss_pred             eecccCCC-cccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEE
Q 006979          237 KVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF  315 (623)
Q Consensus       237 ~~l~~~~~-~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~  315 (623)
                      ..+..... ......++++++.++....|        ..|.+.|+.++..+  ..+...........+....|+|||.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~D--------g~i~iwd~~tg~~i--~~~~~~~~~~~~~~v~~v~~s~~~~~l  320 (342)
T d2ovrb2         251 QTLQGPNKHQSAVTCLQFNKNFVITSSDD--------GTVKLWDLKTGEFI--RNLVTLESGGSGGVVWRIRASNTKLVC  320 (342)
T ss_dssp             EEECSTTSCSSCEEEEEECSSEEEEEETT--------SEEEEEETTTCCEE--EEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred             ccccccceeeeceeecccCCCeeEEEcCC--------CEEEEEECCCCCEE--EEEecccCCCCCCCEEEEEECCCCCEE
Confidence            23322221 12223466677777655422        34888999877432  222211110101346678999998755


Q ss_pred             EEEeCCCCe--eeEEEEecC
Q 006979          316 FVTDRKNGF--WNLHKWIES  333 (623)
Q Consensus       316 ~~~~~~~g~--~~L~~~d~~  333 (623)
                      ..... +|.  ..|+.+|.+
T Consensus       321 a~g~~-dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         321 AVGSR-NGTEETKLLVLDFD  339 (342)
T ss_dssp             EEECS-SSSSCCEEEEEECC
T ss_pred             EEEeC-CCCCeeEEEEEeCC
Confidence            55544 453  466776654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.21  E-value=0.49  Score=46.12  Aligned_cols=104  Identities=13%  Similarity=0.012  Sum_probs=56.7

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccC---C------CCCCceeEEEEE
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR---Q------DALNSTTEIVAI  226 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~---~------~~~~~~~~L~~i  226 (623)
                      .+++.+..+++|.++|+++-  +..++...+......-..+.-.|+-.++++..+..-   +      .+.+....+.++
T Consensus       101 ylFVNDkan~RVAvIdl~~f--kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2         101 FLFMNDKANTRVARVRCDVM--KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEETTTTEEEEEETTTT--EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             EEEEEcCCCceEEEEECcce--eeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            35555556788999999876  444443321011111111223455556666555321   0      122345667789


Q ss_pred             EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEec
Q 006979          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWH  264 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~  264 (623)
                      |.++.+.  ..++.-+. ......+||||||+++.+.+
T Consensus       179 D~~tm~V--~~QV~V~g-~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         179 DADKWEV--AWQVLVSG-NLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             ETTTTEE--EEEEEESS-CCCCEEECSSSSEEEEEESC
T ss_pred             ecCCceE--EEEeeeCC-ChhccccCCCCCEEEEEecc
Confidence            9988763  22232222 23456799999999887744

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.03  E-value=2  Score=40.57  Aligned_cols=172  Identities=10%  Similarity=-0.007  Sum_probs=83.3

Q ss_pred             cceeeCCCCCEEEEEEec-cCC-C--CCCceeEEEEEEcCCCCcccceecc--cC-C---Ccc-cce--eeCCCCCEEEE
Q 006979          194 ADGIFDPRFNRYVTVRED-RRQ-D--ALNSTTEIVAIALNGQNIQEPKVLV--SG-S---DFY-AFP--RMDPRGERMAW  260 (623)
Q Consensus       194 ~d~~~sPdG~~l~~v~~~-~~~-~--~~~~~~~L~~idl~~g~~~~~~~l~--~~-~---~~~-~~p--~wSPDG~~la~  260 (623)
                      .|....|||..++. +.. .+. .  .....+.|+++|+.+.... ...+.  .+ .   +|. -+.  .-.+||+...|
T Consensus        38 EDi~~~~dg~~~is-sg~~~~~~~~~~~~~~G~i~~~dl~~~~~~-~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          38 EDLEILPNGLAFIS-SGLKYPGIMSFDPDKSGKILLMDLNEKEPA-VSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CEEEECTTSEEEEE-ECCCC--------CCCCEEEEEETTSSSCC-EEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             ceEEECCCCcEEEE-ecCccCCCCCCCCCCCCeEEEEecCCCCCc-ceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            35777888854433 321 111 0  0123488999999875411 22332  11 1   121 011  12567876555


Q ss_pred             EEecCCCCCCCceEEEEEEecCCC-ceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCC--------------CCee
Q 006979          261 IEWHHPNMPWDKAELWVGYISENG-DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK--------------NGFW  325 (623)
Q Consensus       261 ~~~~~~~~p~~~~~L~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~--------------~g~~  325 (623)
                      +- +|+.   ....|-+++++.++ .+.....+.... -  .++.+.....||++|+..+..              .++.
T Consensus       116 vv-nH~~---~~~~ieif~~~~~~~~l~~~~~v~~~~-~--~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g  188 (340)
T d1v04a_         116 VV-NHPG---SSSTVEVFKFQEEEKSLLHLKTIRHKL-L--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS  188 (340)
T ss_dssp             EE-ECST---TCCEEEEEEEETTTTEEEEEEEECCTT-C--SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred             EE-eccC---CCceeEEEEEeCCCCeEEEEeecCCcc-c--cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCce
Confidence            54 4432   23334444444332 223333343322 1  456788888898877765431              1234


Q ss_pred             eEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECCeEEEEEEeC
Q 006979          326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD  388 (623)
Q Consensus       326 ~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g~~~L~~~d~  388 (623)
                      .++.+|.  ++.+.+...-   ..+      +...+.   +|++.||++....++-+.|.++.
T Consensus       189 ~v~~~~~--~~~~~~~~~l---~~p------NGI~~s---~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         189 FVTYYSP--NDVRVVAEGF---DFA------NGINIS---PDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             EEEEECS--SCEEEEEEEE---SSE------EEEEEC---TTSSEEEEEEGGGTEEEEEEECT
T ss_pred             eEEEEcC--CceEEEcCCC---Ccc------ceeEEC---CCCCEEEEEeCCCCeEEEEEeCC
Confidence            5666654  4444443221   111      222332   37888888876666655565553

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.71  E-value=0.086  Score=49.01  Aligned_cols=81  Identities=10%  Similarity=0.064  Sum_probs=48.9

Q ss_pred             cCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCc-EEEEEe
Q 006979          241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTD  319 (623)
Q Consensus       241 ~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~-l~~~~~  319 (623)
                      ...+.+...+|||||++|+-.+.|.        .|.++|++.+..........+..    ..+....|++++. +++...
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg--------~v~iwd~~~~~~~~~~~~~~~h~----~~V~~v~f~~~~~~~l~sg~   76 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDG--------SLTVYKFDIQAKNVDLLQSLRYK----HPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTS--------EEEEEEEETTTTEEEEEEEEECS----SCEEEEEEEESSSEEEEEEE
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCC--------eEEEEEccCCCcceEEEEecCCC----CCEEEEEEeCCCCCEEEEcc
Confidence            3345577789999999998776443        37777887654311222222333    4567789998866 555555


Q ss_pred             CCCCeeeEEEEecCCCe
Q 006979          320 RKNGFWNLHKWIESNNE  336 (623)
Q Consensus       320 ~~~g~~~L~~~d~~~~~  336 (623)
                      . ++.  +..++...+.
T Consensus        77 ~-d~~--v~~w~~~~~~   90 (342)
T d1yfqa_          77 V-QGE--ILKVDLIGSP   90 (342)
T ss_dssp             T-TSC--EEEECSSSSS
T ss_pred             c-ccc--eeeeeccccc
Confidence            4 454  4444554444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.41  E-value=3.3  Score=39.03  Aligned_cols=110  Identities=15%  Similarity=0.066  Sum_probs=66.1

Q ss_pred             eeecceeeCCCCCEEEEEEeccCCC----------CCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEE
Q 006979          191 VSYADGIFDPRFNRYVTVREDRRQD----------ALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAW  260 (623)
Q Consensus       191 ~~~~d~~~sPdG~~l~~v~~~~~~~----------~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~  260 (623)
                      ...+|..+..+|. +++ ..++...          .......++.+|  ++.   .+.+..+..+.++.++|||+++|++
T Consensus       150 ~~pNDv~~~~~g~-fy~-Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~--~~~---~~~~~~~l~~pNGI~~s~d~~~lyV  222 (340)
T d1v04a_         150 PSVNDIVAVGPEH-FYA-TNDHYFIDPYLKSWEMHLGLAWSFVTYYS--PND---VRVVAEGFDFANGINISPDGKYVYI  222 (340)
T ss_dssp             SSEEEEEEEETTE-EEE-EESCSCCSHHHHHHHHHTTCCCEEEEEEC--SSC---EEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCccceEEecCCC-EEE-ecCccCcChhhhhhhHhhcCCceeEEEEc--CCc---eEEEcCCCCccceeEECCCCCEEEE
Confidence            3467888888885 444 3343211          011345566555  444   5556666678889999999999887


Q ss_pred             EEecCCCCCCCceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCC-CCcEEEEEe
Q 006979          261 IEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTD  319 (623)
Q Consensus       261 ~~~~~~~~p~~~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~-DG~l~~~~~  319 (623)
                      ....       ..+|+++++++.+.+.....+ ..+    ..+..+.+.+ +|.++....
T Consensus       223 a~t~-------~~~i~~y~~~~~~~l~~~~~~-~l~----~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         223 AELL-------AHKIHVYEKHANWTLTPLRVL-SFD----TLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             EEGG-------GTEEEEEEECTTSCEEEEEEE-ECS----SEEEEEEECTTTCCEEEEEE
T ss_pred             EeCC-------CCeEEEEEeCCCcccceEEEe-cCC----CCCCccEEecCCCEEEEEEC
Confidence            7643       446999999866443322222 223    4556888876 454554443

>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Serine carboxypeptidase-like
domain: Serine carboxypeptidase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.47  E-value=0.16  Score=50.38  Aligned_cols=133  Identities=14%  Similarity=0.121  Sum_probs=78.1

Q ss_pred             CeEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCcC---------------CHHhHHHHcCceEEEEECCCCCC
Q 006979          472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---------------NLSIQYWTSRGWAFVDVNYGGST  536 (623)
Q Consensus       472 g~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~~---------------~~~~~~~a~~G~~v~~~d~rGs~  536 (623)
                      +..+..|++...+.      .++.|+||++.|||+......+               .....-|.+. ..+|-+|.+=++
T Consensus        27 ~~~lfyw~~~s~~~------~~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~~-anllfiD~PvGt   99 (421)
T d1wpxa1          27 DKHFFFWTFESRND------PAKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNSN-ATVIFLDQPVNV   99 (421)
T ss_dssp             CCEEEEEEECCSSC------TTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGGS-SEEEEECCSTTS
T ss_pred             CceEEEEEEEeCCC------CCCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCcccccc-cCEEEEecCCCC
Confidence            56788788766541      3557999999999975442110               0112234544 478888955444


Q ss_pred             CCchhHHHhhccCCccchHHHHHHHHH-HHHhCCCC--CCCceEEEEcChHHHHHHHHh-c---CC---CceeEEEeccc
Q 006979          537 GYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKA--DEKRLCITGGSAGGYTTLAAL-A---FR---DTFKAGASLYG  606 (623)
Q Consensus       537 ~~g~~~~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~--d~~rv~i~G~S~GG~~~~~~~-~---~~---~~f~a~v~~~g  606 (623)
                      |+...-..  ...--....+|+..+++ |+.+.+..  -...+.|.|-||||..+-.++ .   +.   =-+++++...|
T Consensus       100 GfSy~~~~--~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng  177 (421)
T d1wpxa1         100 GFSYSGSS--GVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNG  177 (421)
T ss_dssp             TTCBCSSC--CCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESC
T ss_pred             CceecCCc--cccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCC
Confidence            44432110  00001123445555554 44444433  235799999999999887665 1   22   24789999999


Q ss_pred             CCCHHHh
Q 006979          607 VSIPVII  613 (623)
Q Consensus       607 ~~d~~~~  613 (623)
                      .+|....
T Consensus       178 ~~dp~~~  184 (421)
T d1wpxa1         178 LTDPLTQ  184 (421)
T ss_dssp             CCCHHHH
T ss_pred             cccchhh
Confidence            9997543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.23  E-value=1.5  Score=43.31  Aligned_cols=40  Identities=8%  Similarity=0.154  Sum_probs=25.3

Q ss_pred             CCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCC
Q 006979           79 LTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAK  123 (623)
Q Consensus        79 ~t~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~g~~~l~~~~~~  123 (623)
                      .+++.+.+.-..+..+.|.|++++|..+..   .|+  |++.+..
T Consensus        17 f~~~~ia~~L~~P~~la~~pdg~llVter~---~G~--i~~v~~~   56 (450)
T d1crua_          17 FDKKVILSNLNKPHALLWGPDNQIWLTERA---TGK--ILRVNPE   56 (450)
T ss_dssp             SCEEEEECCCSSEEEEEECTTSCEEEEETT---TCE--EEEECTT
T ss_pred             cEEEEEECCCCCceEEEEeCCCeEEEEEec---CCE--EEEEECC
Confidence            455666655556778888887788877732   254  5555544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.68  E-value=9.5  Score=38.36  Aligned_cols=51  Identities=10%  Similarity=0.105  Sum_probs=31.4

Q ss_pred             EEEEEEeCCCCcee-ecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          381 SYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       381 ~~L~~~d~~~~~~~-~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ..|..+|+.+|++. +...+..... .+...++. +|.++   ....|+.+|.++|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~Taggl-VF~G~---~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNL-VFQGT---AAGQMHAYSADKGE  490 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTE-EEEEC---TTSEEEEEETTTCC
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCE-EEEEC---CCCcEEEEECCCCc
Confidence            46888899888764 3333322222 23555664 45553   23679999999997

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.11  E-value=13  Score=37.49  Aligned_cols=51  Identities=8%  Similarity=-0.036  Sum_probs=30.7

Q ss_pred             EEEEEEeCCCCcee-ecccCCcceE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 006979          381 SYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK  435 (623)
Q Consensus       381 ~~L~~~d~~~~~~~-~lt~~~~~v~-~~~~~~~~~~~~~~s~~~~~~ly~~~l~~~~  435 (623)
                      ..|..+|+.+|+.. +...+..... .+...++.++ .++   ....++.+|.++|+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf-~G~---~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVW-YAT---LDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEE-EEC---TTSEEEEEETTTCC
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEE-EEC---CCCeEEEEECCCCc
Confidence            36888888888764 3333322222 2355666544 443   23578999999987

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.18  E-value=11  Score=35.44  Aligned_cols=157  Identities=10%  Similarity=0.039  Sum_probs=72.7

Q ss_pred             EEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecc------eeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 006979          156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYAD------GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN  229 (623)
Q Consensus       156 ~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d------~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~  229 (623)
                      .++|.....+.||++|+++.  ..+.+..+      |.++      +.+.-++.-++++.......   ..-.+|.++..
T Consensus        41 SlI~gTdK~~Gl~vYdL~G~--~l~~~~~G------r~NNVDvr~~~~l~~~~~di~vasnR~~~~---~~l~~~~id~~  109 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLEGK--MLHSYHTG------KLNNVDIRYDFPLNGKKVDIAAASNRSEGK---NTIEIYAIDGK  109 (353)
T ss_dssp             CEEEEEETTSCCEEEETTCC--EEEECCSS------CEEEEEEEEEEEETTEEEEEEEEEECCTTT---CEEEEEEEETT
T ss_pred             cEEEEEcCcCCEEEEcCCCc--EEEecccC------CcCccccccccccCCcceEEEEEeCCcCcc---eeEEEEEecCc
Confidence            46666656666999999854  45555433      3332      22222222344444322111   12346667655


Q ss_pred             CCCcccceecccC-------CCcccceee--CCC-CCEEEEEEecCCCCCCCceEEEEEEecCCCceee--eEEEcCCCC
Q 006979          230 GQNIQEPKVLVSG-------SDFYAFPRM--DPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDVYK--RVCVAGFDP  297 (623)
Q Consensus       230 ~g~~~~~~~l~~~-------~~~~~~p~w--SPD-G~~la~~~~~~~~~p~~~~~L~v~d~~~~~~~~~--~~~~~~~~~  297 (623)
                      .+.   ...+...       ..-..+.+.  +|+ |+..+|+...+     ...+.|.+.....+.+..  .+.+.-.  
T Consensus       110 ~~~---l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~-----G~v~q~~l~~~~~g~v~~~lvr~f~~~--  179 (353)
T d1h6la_         110 NGT---LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKE-----GEFEQYELNADKNGYISGKKVRAFKMN--  179 (353)
T ss_dssp             TTE---EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSS-----SEEEEEEEEECTTSSEEEEEEEEEECS--
T ss_pred             ccc---cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCC-----ceEEEEEEEcCCCCceeeEeeeccCCC--
Confidence            554   3333221       111233454  665 56566776332     133445555444443222  2222211  


Q ss_pred             CccccCcCceeCCCCcEEEEEeCCCCeeeEEEEe--cCCCeEEE
Q 006979          298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI--ESNNEVLA  339 (623)
Q Consensus       298 ~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d--~~~~~~~~  339 (623)
                         ..........+.+.+|+++...|   +|+++  +.......
T Consensus       180 ---~q~EGCVvDde~~~LyisEE~~G---iw~~~a~~~~~~~~~  217 (353)
T d1h6la_         180 ---SQTEGMAADDEYGSLYIAEEDEA---IWKFSAEPDGGSNGT  217 (353)
T ss_dssp             ---SCEEEEEEETTTTEEEEEETTTE---EEEEESSTTSCSCCE
T ss_pred             ---CccceEEEeCCCCcEEEecCccc---eEEEEeccCCCccce
Confidence               12234556666556667766343   45454  44444333

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.59  E-value=8.2  Score=33.49  Aligned_cols=108  Identities=10%  Similarity=-0.065  Sum_probs=58.2

Q ss_pred             CceEEEeCCEEEEEeCCCCcEEEEeCCCCCCCceecCCCCCCCCeeecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 006979          147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI  226 (623)
Q Consensus       147 ~~~~~~s~d~l~f~~~~~~~l~~~d~~~g~~~~~~Lt~~~~~~~~~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~i  226 (623)
                      +.++.+++ ..+++...|+.|.++|+.++ ...+.+...    .....  .+++++++|+....+         ..+.+.
T Consensus        18 V~c~~~d~-~~l~sgs~Dg~i~vWd~~~~-~~~~~l~~H----~~~V~--~v~~~~~~l~s~s~D---------~~i~~~   80 (293)
T d1p22a2          18 VYCLQYDD-QKIVSGLRDNTIKIWDKNTL-ECKRILTGH----TGSVL--CLQYDERVIITGSSD---------STVRVW   80 (293)
T ss_dssp             EEEEECCS-SEEEEEESSSCEEEEESSSC-CEEEEECCC----SSCEE--EEECCSSEEEEEETT---------SCEEEE
T ss_pred             EEEEEEcC-CEEEEEeCCCeEEEEECCCC-cEEEEEecC----CCCEe--eeecccceeeccccc---------cccccc
Confidence            33444433 45667778888999999876 233444422    12233  355678877655443         447778


Q ss_pred             EcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEEEEEecCC
Q 006979          227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN  283 (623)
Q Consensus       227 dl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~v~d~~~~  283 (623)
                      ++..+.   .......... ....+.+....++....+.        .+.+.+....
T Consensus        81 ~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  125 (293)
T d1p22a2          81 DVNTGE---MLNTLIHHCE-AVLHLRFNNGMMVTCSKDR--------SIAVWDMASP  125 (293)
T ss_dssp             ESSSCC---EEEEECCCCS-CEEEEECCTTEEEEEETTS--------CEEEEECSSS
T ss_pred             cccccc---cccccccccc-ccccccccccceeeccccc--------ceeEeecccc
Confidence            887775   2222222221 2234555556665554222        2556666554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.48  E-value=8.3  Score=33.44  Aligned_cols=66  Identities=9%  Similarity=-0.038  Sum_probs=41.7

Q ss_pred             eeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCCceEEE
Q 006979          197 IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW  276 (623)
Q Consensus       197 ~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~~~~L~  276 (623)
                      ++++||++|+-...|         ..|.+.|+.+++.  ...+....+.+.  .+++|+++|+-...|.        .+.
T Consensus        20 c~~~d~~~l~sgs~D---------g~i~vWd~~~~~~--~~~l~~H~~~V~--~v~~~~~~l~s~s~D~--------~i~   78 (293)
T d1p22a2          20 CLQYDDQKIVSGLRD---------NTIKIWDKNTLEC--KRILTGHTGSVL--CLQYDERVIITGSSDS--------TVR   78 (293)
T ss_dssp             EEECCSSEEEEEESS---------SCEEEEESSSCCE--EEEECCCSSCEE--EEECCSSEEEEEETTS--------CEE
T ss_pred             EEEEcCCEEEEEeCC---------CeEEEEECCCCcE--EEEEecCCCCEe--eeecccceeecccccc--------ccc
Confidence            478899988766554         4577889988762  333433223333  4566888877555332        377


Q ss_pred             EEEecCC
Q 006979          277 VGYISEN  283 (623)
Q Consensus       277 v~d~~~~  283 (623)
                      +.++..+
T Consensus        79 ~~~~~~~   85 (293)
T d1p22a2          79 VWDVNTG   85 (293)
T ss_dssp             EEESSSC
T ss_pred             ccccccc
Confidence            7788766

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.41  E-value=10  Score=34.52  Aligned_cols=201  Identities=12%  Similarity=0.189  Sum_probs=108.9

Q ss_pred             eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCCCCC
Q 006979          192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD  271 (623)
Q Consensus       192 ~~~d~~~sPdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~p~~  271 (623)
                      .+....+..  .+.+|+++..++     .+++.++|+..+..  +.+-.-.+|..   --.|..+-||.-.         
T Consensus        23 ~f~~~T~ES--DkyicVRe~~~~-----~~~VvIidl~n~~~--~~Rrpi~AdsA---IMhP~~~IiALra---------   81 (327)
T d1utca2          23 GFSTLTMES--DKFICIREKVGE-----QAQVVIIDMNDPSN--PIRRPISADSA---IMNPASKVIALKA---------   81 (327)
T ss_dssp             STTTEECSS--SSEEEEEEEETT-----EEEEEEEETTSTTS--CEEEECCCSEE---EECSSSSEEEEEE---------
T ss_pred             ccccEEEec--CCEEEEEeccCC-----CceEEEEECCCCCc--ceecccchhhh---hcCCCCcEEEEec---------
Confidence            344444443  346788985433     38899999987542  22222233322   2467777666543         


Q ss_pred             ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEeCCCCeeeEEEEecCCC-eEEEEeecccccccc
Q 006979          272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRP  350 (623)
Q Consensus       272 ~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~~~~g~~~L~~~d~~~~-~~~~l~~~~~~~~~~  350 (623)
                      +..|-++|++...    +..-...+    +.+.-..|..+..|.++++.     .+|.++.++. ....+........+-
T Consensus        82 g~~LQiFnletK~----klks~~~~----e~VvfWkWis~~~L~lVT~t-----aVYHW~~~g~s~P~k~fdR~~~L~~~  148 (327)
T d1utca2          82 GKTLQIFNIEMKS----KMKAHTMT----DDVTFWKWISLNTVALVTDN-----AVYHWSMEGESQPVKMFDRHSSLAGC  148 (327)
T ss_dssp             TTEEEEEETTTTE----EEEEEECS----SCCCEEEESSSSEEEEECSS-----EEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred             CCeEEEEehhHhh----hhceEEcC----CCcEEEEecCCCEEEEEcCC-----ceEEEcccCCCCchhhhhhcccccCc
Confidence            2348899998873    22222222    45567899888778888776     5777777543 244454332222111


Q ss_pred             cccccCcceeEEeecCCCCEEEEEEE--ECC--eEEEEEEeCCCCceeecccCCcceEee----eecCCEEEEEEecCCC
Q 006979          351 LWVFGINSYEIIQSHGEKNLIACSYR--QNG--RSYLGILDDFGHSLSLLDIPFTDIDNI----TLGNDCLFVEGASGVE  422 (623)
Q Consensus       351 ~w~~~~~~~~~l~~s~~~~~l~~~~~--~~g--~~~L~~~d~~~~~~~~lt~~~~~v~~~----~~~~~~~~~~~~s~~~  422 (623)
                      .-    =.|.   .+++.+++++..-  +++  ..++-++..+.+.-+.|......+..+    ......+++.+.....
T Consensus       149 QI----InY~---~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         149 QI----INYR---TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             EE----EEEE---ECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             eE----EEEE---ECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            00    0122   2347777665532  333  123444455555556666554445554    3334456666654444


Q ss_pred             CCeEEEEEcCC
Q 006979          423 PSSVAKVTLDD  433 (623)
Q Consensus       423 ~~~ly~~~l~~  433 (623)
                      ...|..+++..
T Consensus       222 ~~kLhIiEig~  232 (327)
T d1utca2         222 GGKLHIIEVGT  232 (327)
T ss_dssp             EEEEEEEECSC
T ss_pred             CcEEEEEEcCC
Confidence            56788887765

>d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Serine carboxypeptidase-like
domain: Serine carboxypeptidase II
species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]

Probab=87.23  E-value=0.95  Score=45.38  Aligned_cols=135  Identities=15%  Similarity=0.158  Sum_probs=75.2

Q ss_pred             eEEEEEEEcCCCCCCCCCCCCCCCEEEEecCCCCCcccCc-------C--------CHHhHHHHcCceEEEEECCCCCCC
Q 006979          473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-------L--------NLSIQYWTSRGWAFVDVNYGGSTG  537 (623)
Q Consensus       473 ~~i~~~l~~P~~~~~~~~~~~~~Pliv~~hGg~~~~~~~~-------~--------~~~~~~~a~~G~~v~~~d~rGs~~  537 (623)
                      ..+.-|++...+..    +....|+||++.|||+......       +        .....-|.+. ..+|-+|.+=+.|
T Consensus        49 ~~~ffw~fe~~~~~----~~~~~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn~~-an~lfIDqPvGvG  123 (483)
T d1ac5a_          49 LEYFFWKFTNNDSN----GNVDRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWISK-GDLLFIDQPTGTG  123 (483)
T ss_dssp             CEEEEEEEECSCSG----GGSSCCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGGGT-SEEEEECCSTTST
T ss_pred             ceEEEEEEEecCCC----CCCCCCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCccccc-CCEEEEeCCCCcC
Confidence            35666777554311    1234599999999997543211       0        0122235554 5788888765455


Q ss_pred             CchhH--HHhhcc--CCccc---hHHHHHHHHH-HHHhCCCCCCCceEEEEcChHHHHHHHHh-cC---C---------C
Q 006979          538 YGREF--RERLLG--RWGIV---DVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAAL-AF---R---------D  596 (623)
Q Consensus       538 ~g~~~--~~~~~~--~~g~~---~~~D~~~~~~-~l~~~~~~d~~rv~i~G~S~GG~~~~~~~-~~---~---------~  596 (623)
                      |...-  ......  .....   ...|+...++ |+...+..-..++.|.|-||||..+-.++ ..   .         =
T Consensus       124 fSy~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~i  203 (483)
T d1ac5a_         124 FSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTY  203 (483)
T ss_dssp             TCSSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCC
T ss_pred             eeecCCCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCcc
Confidence            43210  000000  11111   1233333333 44555554467999999999998876555 21   1         1


Q ss_pred             ceeEEEecccCCCHHH
Q 006979          597 TFKAGASLYGVSIPVI  612 (623)
Q Consensus       597 ~f~a~v~~~g~~d~~~  612 (623)
                      -+++++...|.+|...
T Consensus       204 nLkGi~IGNg~~d~~~  219 (483)
T d1ac5a_         204 DLKALLIGNGWIDPNT  219 (483)
T ss_dssp             EEEEEEEEEECCCHHH
T ss_pred             cceeeeecCCccChhh
Confidence            4899999999988753

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.22  E-value=12  Score=33.10  Aligned_cols=103  Identities=16%  Similarity=0.064  Sum_probs=55.0

Q ss_pred             eeEEEEecCCCeEEEEeecccccccccccccCcceeEEeecCCCCEEEEEEEECC---eEEEEEEeCCCCceeecccCC-
Q 006979          325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLLDIPF-  400 (623)
Q Consensus       325 ~~L~~~d~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~l~~s~~~~~l~~~~~~~g---~~~L~~~d~~~~~~~~lt~~~-  400 (623)
                      ..++.+|+.+++.............       ......    + +.+++..-.++   ...++++|..+.+++.+.... 
T Consensus       164 ~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~----~-~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~  231 (288)
T d1zgka1         164 NSAECYYPERNEWRMITAMNTIRSG-------AGVCVL----H-NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH  231 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBS-------CEEEEE----T-TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred             ceEEEeecccccccccccccccccc-------ccccce----e-eeEEEecCccccccccceeeeeecceeeecccCccC
Confidence            4678889888776655422111111       111222    3 34444322111   345778899888888775322 


Q ss_pred             cce-EeeeecCCEEEEEEe--cCCCCCeEEEEEcCCCcceee
Q 006979          401 TDI-DNITLGNDCLFVEGA--SGVEPSSVAKVTLDDHKLKAV  439 (623)
Q Consensus       401 ~~v-~~~~~~~~~~~~~~~--s~~~~~~ly~~~l~~~~~~~l  439 (623)
                      ... ..+..-++++|+.+.  .......++.+|+..++.+.+
T Consensus       232 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~  273 (288)
T d1zgka1         232 RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV  273 (288)
T ss_dssp             CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             cccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEEC
Confidence            111 122223567877764  223335689999998875443

>d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Triacylglycerol lipase
species: Rhizopus niveus [TaxId: 4844]

Probab=82.07  E-value=0.59  Score=42.78  Aligned_cols=36  Identities=28%  Similarity=0.286  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      .+++...++.++++.  ...+|.+.|||+||.++..++
T Consensus       116 ~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a  151 (265)
T d1lgya_         116 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAG  151 (265)
T ss_dssp             HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHH
Confidence            456666676665542  136999999999999998766

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=81.76  E-value=1.8  Score=41.93  Aligned_cols=103  Identities=7%  Similarity=-0.123  Sum_probs=54.4

Q ss_pred             CCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccceecccCCCcccceeeCCCCCEEEEEEecCCCC--CCC------
Q 006979          200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM--PWD------  271 (623)
Q Consensus       200 PdG~~l~~v~~~~~~~~~~~~~~L~~idl~~g~~~~~~~l~~~~~~~~~p~wSPDG~~la~~~~~~~~~--p~~------  271 (623)
                      +||++|+ +.+..       .++|.+||+++-+..++..+...... -+.+.++++++.|.....+..+  |.+      
T Consensus        97 yDGrylF-VNDka-------n~RVAvIdl~~fkt~kIi~iPn~~~~-HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          97 YDGRFLF-MNDKA-------NTRVARVRCDVMKCDAILEIPNAKGI-HGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEEEE-EEETT-------TTEEEEEETTTTEEEEEEECSSCCSE-EEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cceeEEE-EEcCC-------CceEEEEECcceeeeEEEecCCCCCC-ceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            5887664 44432       27899999998773222233222222 2345566777665554222211  111      


Q ss_pred             ----ceEEEEEEecCCCceeeeEEEcCCCCCccccCcCceeCCCCcEEEEEe
Q 006979          272 ----KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD  319 (623)
Q Consensus       272 ----~~~L~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws~DG~l~~~~~  319 (623)
                          ...+.++|.++.. + ..++..+.      .+....+++||+.+|++.
T Consensus       168 ~~~y~~~~t~ID~~tm~-V-~~QV~V~g------~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWE-V-AWQVLVSG------NLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             GG-EEEEEEEEETTTTE-E-EEEEEESS------CCCCEEECSSSSEEEEEE
T ss_pred             hhhcceEEEEEecCCce-E-EEEeeeCC------ChhccccCCCCCEEEEEe
Confidence                1345567776542 1 22333332      345889999999555543

>d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Triacylglycerol lipase
species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]

Probab=81.29  E-value=0.65  Score=42.56  Aligned_cols=36  Identities=22%  Similarity=0.138  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      .+++...++.++++.  ...+|.+.|||+||.+|..++
T Consensus       121 ~~~v~~~v~~~~~~~--~~~~i~vtGHSLGGalA~l~a  156 (269)
T d1tiba_         121 ADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAG  156 (269)
T ss_dssp             HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCcceeeeccchHHHHHHHHH
Confidence            355666666665542  135999999999999998776

>d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Triacylglycerol lipase
species: Penicillium camembertii [TaxId: 5075]

Probab=81.09  E-value=0.66  Score=42.59  Aligned_cols=36  Identities=19%  Similarity=0.160  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      ..++...++.+.++.  ...+|.+.|||+||.++..++
T Consensus       120 ~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a  155 (271)
T d1tiaa_         120 RDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAA  155 (271)
T ss_pred             HHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHH
Confidence            456666777666552  135899999999999998766

>d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Fungal lipases
domain: Feruloyl esterase A
species: Aspergillus niger [TaxId: 5061]

Probab=80.84  E-value=0.7  Score=42.12  Aligned_cols=36  Identities=17%  Similarity=0.084  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCceEEEEcChHHHHHHHHh
Q 006979          555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL  592 (623)
Q Consensus       555 ~~D~~~~~~~l~~~~~~d~~rv~i~G~S~GG~~~~~~~  592 (623)
                      .+++...++.+.++.  ...+|.+.|||+||.++..++
T Consensus       108 ~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a  143 (261)
T d1uwca_         108 QDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTA  143 (261)
T ss_dssp             HHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHH
Confidence            356667777766653  235999999999999998765