Citrus Sinensis ID: 006983


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620---
MEMGISFSYPVADFDDLDSPFGEVHLRSISLTEAANERSVLRKLSVNGRESNSKPTALRKKMIERLLSFERRALESKFSFKTPSAEMDNQVFGNTMSFKDAEGGDQSPGSYDFQDAKSHLPLEHGNQRYQAALRLQKVYKSFRTRRRLADCAVLAEQRWWKVLDFAELKRSSISFFDIDKNETALSRWSRARTRAAKVGKGLSKSEKARKLALQHWLEAIDPRHRYGHNLQFYYVTWLHCESQQPFFYWLDIGAGKEVNLERCPRSKLQQQCIKYLGPTERMEYEVRIEDGKLIYKKSGTVLDSTKGPKDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVDNGYLKAIWPHSGHYLPTEENFQAFMSFLREHNVDLTNVKKSPEEEEEVAIKKSKSIHDNPLEVGISQDTEAADVKTSAQEDIDSRKEGPNPAENPAQPEPRDEVPRSSDMIDICKTEALPESCSSEYQEHPSDDGYETAEESFLSEEDFMVSKKNLFDEDAEENEKPVPKEKIMQRIDSHKGLKSYQLAQQLSSKWSTGAGPRIGCMRDYPSELQAQILELANLSPRASSSSRIRSHSCPRVLAPNSVSREILAKSPLAPEQVVVSQTKP
ccccEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccEEEEcccccccccccccHHHHHHHHcccccccccccEEEEEEccEEEEcccccEEEccccccccEEEEEEcccccEEEEccccccEEEccccccccccEEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHcccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHcccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
cccEEEEEcccccccccccccccEEEEEEEccccccccccccccccccccccccccHcccEEEEcccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccEEEEEEcccccccccccccHHHHHHHHHHHccHHHHHHEEEEEEccEEEEEEccEEEEcccccccccEEEEEEcccEEEEEEcccccEEccHHccccHHEEcEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHcccccccEEEcccccccccHHcccccccccccccccccHHHHHHHcccHHccccccccccccccccccccHHHcccccccHHHcccccccccccccccccccHccccccHHHcccccccccccccccccccccccccccHHHHHHHHHccccccHHHHccccccEEcccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEccccc
memgisfsypvadfddldspfgevhLRSISLTEAANERSVLRKLSvngresnskpTALRKKMIERLLSFERRALEskfsfktpsaemdnqvfgntmsfkdaeggdqspgsydfqdakshlplehgNQRYQAALRLQKVYKSFRTRRRLADCAVLAEQRWWKVLDFAElkrssisffdidknETALSRWSRARTRAAKVGKGLSKSEKARKLALQHWLEAidprhryghnLQFYYVTWlhcesqqpffywldigagkevnlercprsklQQQCIKYlgptermeYEVRIEDGKliykksgtvldstkgpkdtkWIFVLSTSktlyvgqkikgnfqhssflaggatlsagrlvvdngylkaiwphsghylpteENFQAFMSFLREHnvdltnvkkspeEEEEVAIKKSksihdnplevgisqdteaadvktsaqedidsrkegpnpaenpaqpeprdevprssdmidicktealpescsseyqehpsddgyetaeesflseEDFMVSKknlfdedaeenekpvpkekimqridshkglkSYQLAQQLSskwstgagprigcmrdyPSELQAQILELAnlsprassssrirshscprvlapnsvsreilaksplapeqvvvsqtkp
MEMGISFSYPVADFDDLDSPFGEVHLRSIslteaanersvlrklsvngresnskptalrKKMIERLLSFERRALEskfsfktpsaemdnQVFGNTMSFKDAEGGDQSPGSYDFQDAKSHLPLEHGNQRYQAALRLQKVYKSFRTRRRLADCAVLAEQRWWKVLDFAELKrssisffdidknetalsrwsrartraakvgkglsksekARKLALQHWLEAIDPRHRYGHNLQFYYVTWLHCESQQPFFYWLDIGAGKEVNlercprsklqqqcikylgptermeYEVRIEdgkliykksgtvldstkgpkdtkWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVDNGYLKAIWPHSGHYLPTEENFQAFMSFLREHNVDltnvkkspeEEEEVAikksksihdnplevgisqdteaadVKTSAqedidsrkegpnpaenpaqpeprdevprsSDMIDICKTEALPESCSSEYQEHPSDDGYETAEESFLSEEDFMVSKKNLfdedaeenekpvpkekiMQRIDSHKGLKSYQLAQQLSSKWSTGAGPRIGCMRDYPSELQAQILELANLSPRassssrirshscprvlapnsvSREIlaksplapeqvvvsqtkp
MEMGISFSYPVADFDDLDSPFGEVHLRSISLTEAANERSVLRKLSVNGRESNSKPTALRKKMIERLLSFERRALESKFSFKTPSAEMDNQVFGNTMSFKDAEGGDQSPGSYDFQDAKSHLPLEHGNQRYQAALRLQKVYKSFRTRRRLADCAVLAEQRWWKVLDFAELKRSSISFFDIDKNETALSRWSRARTRAAKVGKGLSKSEKARKLALQHWLEAIDPRHRYGHNLQFYYVTWLHCESQQPFFYWLDIGAGKEVNLERCPRSKLQQQCIKYLGPTERMEYEVRIEDGKLIYKKSGTVLDSTKGPKDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVDNGYLKAIWPHSGHYLPTEENFQAFMSFLREHNVDLTNVKKSPEEEEEVAIKKSKSIHDNPLEVGISQDTEAADVKTSAQEDIDSRKEGpnpaenpaqpepRDEVPRSSDMIDICKTEALPESCSSEYQEHPSDDGYETAEESFLSEEDFMVSKKNLFDEDAEENEKPVPKEKIMQRIDSHKGLKSYQLAQQLSSKWSTGAGPRIGCMRDYPSELQAQILELANLsprassssrirshscprVLAPNSVSREILAKSPLAPEQVVVSQTKP
*******SYPVADFDDLDSPFGEVHLR****************************************************************************************************RYQAALRLQKVYKSFRTRRRLADCAVLAEQRWWKVLDFAELKRSSISFFDIDKNETALSRW*********************KLALQHWLEAIDPRHRYGHNLQFYYVTWLHCESQQPFFYWLDIGAGKEVNLERCPRSKLQQQCIKYLGPTERMEYEVRIEDGKLIYKKSGTVLDSTKGPKDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVDNGYLKAIWPHSGHYLPTEENFQAFMSFLREHNVDL***********************************************************************************************************************************************************************RIGCMRDY*******I****************************************************
*EMGISFSYPVADFDDLDSPF***************************************************************************************************************LRLQKVYKSFRTRRRLADCAVLAEQRWWKVLDFAEL********************************************LQHWLEAIDPRHRYGHNLQFYYVTWLHCESQQPFFYWLDIGAGKEVNLERCPRSKLQQQCIKYLGPTERMEYEVRIEDGKLIYKKSGTVLDSTKGPKDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVDNGYLKAIWPHSGHYLPTEENFQAFMSFLREHNVDLTNVKKSPEEEE*****************************************************************************************************************************************************WSTGAGPRIGCMRDYPSELQAQIL***************************************************
MEMGISFSYPVADFDDLDSPFGEVHLRSISLTEAANERSVLRKLS**********TALRKKMIERLLSFERRALESKFSFKTPSAEMDNQVFGNTMSFKDA*********YDFQDAKSHLPLEHGNQRYQAALRLQKVYKSFRTRRRLADCAVLAEQRWWKVLDFAELKRSSISFFDIDKNETALSRWS******************ARKLALQHWLEAIDPRHRYGHNLQFYYVTWLHCESQQPFFYWLDIGAGKEVNLERCPRSKLQQQCIKYLGPTERMEYEVRIEDGKLIYKKSGTVLDSTKGPKDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVDNGYLKAIWPHSGHYLPTEENFQAFMSFLREHNVDLTNV**************SKSIHDNPLEVGISQDT*************************************SSDMIDICKTEALPE*******************ESFLSEEDFMVSKKNLF***********PKEKIMQRIDSHKGLKSYQLAQQLSSKWSTGAGPRIGCMRDYPSELQAQILELANL****************RVLAPNSVSREILAKSPLA***********
*EMGISFSYPVADFDDLDSPFGEVHLRSISLTE********************KPTALRKKMIERLLSFERRALESKFSFKTP****************************************HGNQRYQAALRLQKVYKSFRTRRRLADCAVLAEQRWWKVLDFAELKRSSISFFDIDKNETALSRWSRARTRAAKVGKGLSKSEKARKLALQHWLEAIDPRHRYGHNLQFYYVTWLHCESQQPFFYWLDIGAGKEVNLERCPRSKLQQQCIKYLGPTERMEYEVRIEDGKLIYKKSGTVLDSTKGPKDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVDNGYLKAIWPHSGHYLPTEENFQAFMSFLREHNVDLTNVKKSPE**************************************************************************************************************************KPVPKEKIMQRIDSHKGLKSYQLAQQLSSKWSTGAGPRIGCMRDYPSELQAQILELANLS*********************************************
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MEMGISFSYPVADFDDLDSPFGEVHLRSISLTEAANERSVLRKLSVNGRESNSKPTALRKKMIERLLSFERRALESKFSFKTPSAEMDNQVFGNTMSFKDAEGGDQSPGSYDFQDAKSHLPLEHGNQRYQAALRLQKVYKSFRTRRRLADCAVLAEQRWWKVLDFAELKRSSISFFDIDKNETALSRWSRARTRAAKVGKGLSKSEKARKLALQHWLEAIDPRHRYGHNLQFYYVTWLHCESQQPFFYWLDIGAGKEVNLERCPRSKLQQQCIKYLGPTERMEYEVRIEDGKLIYKKSGTVLDSTKGPKDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVDNGYLKAIWPHSGHYLPTEENFQAFMSFLREHNVDLTNVKKSPEEEEEVAIKKSKSIHDNPLEVGISQDTEAADVKTSAQEDIDSRKEGPNPAENPAQPEPRDEVPRSSDMIDICKTEALPESCSSEYQEHPSDDGYETAEESFLSEEDFMVSKKNLFDEDAEENEKPVPKEKIMQRIDSHKGLKSYQLAQQLSSKWSTGAGPRIGCMRDYPSELQAQILELANLSPRASSSSRIRSHSCPRVLAPNSVSREILAKSPLAPEQVVVSQTKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query623
255581570624 calmodulin binding protein, putative [Ri 0.958 0.956 0.609 0.0
225441575629 PREDICTED: uncharacterized protein LOC10 0.943 0.934 0.593 0.0
449523850637 PREDICTED: uncharacterized protein LOC10 0.980 0.959 0.594 0.0
449437896637 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.980 0.959 0.593 0.0
15231045575 calmodulin-binding protein-like protein 0.788 0.853 0.666 0.0
356498365552 PREDICTED: uncharacterized protein LOC10 0.829 0.936 0.613 1e-175
224091525435 predicted protein [Populus trichocarpa] 0.670 0.960 0.687 1e-175
224138166417 predicted protein [Populus trichocarpa] 0.659 0.985 0.683 1e-174
356533071500 PREDICTED: uncharacterized protein LOC10 0.739 0.922 0.651 1e-170
225435735645 PREDICTED: uncharacterized protein LOC10 0.924 0.893 0.520 1e-168
>gi|255581570|ref|XP_002531590.1| calmodulin binding protein, putative [Ricinus communis] gi|223528786|gb|EEF30793.1| calmodulin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/635 (60%), Positives = 465/635 (73%), Gaps = 38/635 (5%)

Query: 3   MGISFSYPVADFDDLDSPFGEVHLRSISLTEAANERSVLRKLSVNGRESNSKPTALR--- 59
           MGI+FS P  DF+DLDS    V ++SI + +  + R+ LR +S NGR+S    T LR   
Sbjct: 1   MGIAFSCPFGDFNDLDSRLNAVLMKSIEI-DGEDVRTALRSVSFNGRDSEH--TILRSFG 57

Query: 60  --KKMIERLLSFERRALESKFSFKTPSAEMDNQVFGNTMSFKDAEGGDQSPGSYDFQDAK 117
             K + E  LSF+ R L + FSFK+  +E+       T   K+   GDQ   S      K
Sbjct: 58  SGKMLFEGSLSFKGRELNTTFSFKSTDSEL------ATFIPKNGNRGDQLTRSDTLSKVK 111

Query: 118 SHLPL-EHGNQRYQAALRLQKVYKSFRTRRRLADCAVLAEQRWWKVLDFAELKRSSISFF 176
              PL E GNQ ++AA++LQKVYKSFRTRR+LADCAV+ EQRWWK+LDFAELKRSSISFF
Sbjct: 112 HPTPLAESGNQLHEAAVKLQKVYKSFRTRRQLADCAVVVEQRWWKLLDFAELKRSSISFF 171

Query: 177 DIDKNETALSRWSRARTRAAKVGKGLSKSEKARKLALQHWLEAIDPRHRYGHNLQFYYVT 236
           DI+K ETA+SRWSRARTRAAKVGKGLSK  KARKLALQHWLEAIDPRHRYGHNLQFYY  
Sbjct: 172 DIEKPETAISRWSRARTRAAKVGKGLSKDAKARKLALQHWLEAIDPRHRYGHNLQFYYCK 231

Query: 237 WLHCESQQPFFYWLDIGAGKEVNLERCPRSKLQQQCIKYLGPTERMEYEVRIEDGKLIYK 296
           WLHC+S QPFFYWLDIG GKEVNL+RCPRSKLQQQCIKYLGPTER  YEV + DGK +YK
Sbjct: 232 WLHCQSTQPFFYWLDIGEGKEVNLDRCPRSKLQQQCIKYLGPTERQTYEVVLNDGKFVYK 291

Query: 297 KSGTVLDSTKGPKDTKWIFVLSTSKTLYVGQKIKGNFQHSSFLAGGATLSAGRLVVDNGY 356
           +SG VLD+T GPKD KWIFVLSTSKTLYVG K KG FQHSSFLAGGATLSAGR+VV++G 
Sbjct: 292 QSGKVLDTTGGPKDAKWIFVLSTSKTLYVGLKNKGRFQHSSFLAGGATLSAGRIVVEDGV 351

Query: 357 LKAIWPHSGHYLPTEENFQAFMSFLREHNVDLTNVKKSPEEEEEVAI-KKSKSI--HDNP 413
           LKA+WPHSGHYLPTEENFQ FMSFLREHNVDL+N+K+SP EEEE AI KK KSI   D+ 
Sbjct: 352 LKAVWPHSGHYLPTEENFQEFMSFLREHNVDLSNIKESPAEEEEEAISKKGKSISLRDSQ 411

Query: 414 LEVGISQDTEAADVKTSAQEDIDSRKEGPNPAENPAQ---PE---------PRDEVPRSS 461
            +  + Q T    +K+  QE+ D RK+    AE+ +    P+          + E+P   
Sbjct: 412 PDAVLCQHTNITSIKSLPQENRDFRKQDSAAAEDTSDQFIPKLSHGLQLNITKLEIPTRE 471

Query: 462 DMIDICKTEALPESCSSEYQEHPSDDGYETAEESFLSEEDFMVSKKNLF-DEDAEENEKP 520
           D+ +I K EA  +S      E P++DGYE+ E+S L+EEDF+  K NLF ++D EE+E+P
Sbjct: 472 DVHEILKEEARGQS----NVEPPNEDGYESGEDSCLTEEDFIFLKINLFDEDDKEEDEEP 527

Query: 521 VPKEKIMQRIDSHKGLKSYQLAQQLSSKWSTGAGPRIGCMRDYPSELQAQILELANLSPR 580
           +PKEKI++RI+SHKG+KSYQLA+QLSSKW+TGAGPRIGC+RDYPSELQ ++LE ANLSPR
Sbjct: 528 IPKEKIVKRINSHKGMKSYQLAKQLSSKWTTGAGPRIGCVRDYPSELQFRVLEHANLSPR 587

Query: 581 ---ASSSSRIRSHSCPRVLAPNSVSREILAKSPLA 612
              A+S+ R  S    +  AP    RE   +S LA
Sbjct: 588 TESANSTPRSASRFSLKDSAPTPARREAPCRSSLA 622




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441575|ref|XP_002276712.1| PREDICTED: uncharacterized protein LOC100241826 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449523850|ref|XP_004168936.1| PREDICTED: uncharacterized protein LOC101227697 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449437896|ref|XP_004136726.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101221827 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15231045|ref|NP_191407.1| calmodulin-binding protein-like protein [Arabidopsis thaliana] gi|6735365|emb|CAB68186.1| putative protein [Arabidopsis thaliana] gi|332646266|gb|AEE79787.1| calmodulin-binding protein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356498365|ref|XP_003518023.1| PREDICTED: uncharacterized protein LOC100795798 [Glycine max] Back     alignment and taxonomy information
>gi|224091525|ref|XP_002309279.1| predicted protein [Populus trichocarpa] gi|222855255|gb|EEE92802.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224138166|ref|XP_002322746.1| predicted protein [Populus trichocarpa] gi|222867376|gb|EEF04507.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356533071|ref|XP_003535092.1| PREDICTED: uncharacterized protein LOC100794024 [Glycine max] Back     alignment and taxonomy information
>gi|225435735|ref|XP_002283551.1| PREDICTED: uncharacterized protein LOC100250050 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query623
TAIR|locus:2076421575 AT3G58480 "AT3G58480" [Arabido 0.897 0.972 0.587 4.7e-167
TAIR|locus:2086819605 AT3G13600 "AT3G13600" [Arabido 0.739 0.761 0.590 3.2e-149
TAIR|locus:2085161456 AT3G52870 "AT3G52870" [Arabido 0.475 0.649 0.542 7.4e-103
TAIR|locus:2057765532 AT2G26190 "AT2G26190" [Arabido 0.489 0.573 0.627 4.4e-100
TAIR|locus:2164655495 AT5G57010 "AT5G57010" [Arabido 0.434 0.547 0.600 1.2e-90
TAIR|locus:2123817526 EDA39 "AT4G33050" [Arabidopsis 0.335 0.397 0.595 1.8e-76
TAIR|locus:2076421 AT3G58480 "AT3G58480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1625 (577.1 bits), Expect = 4.7e-167, P = 4.7e-167
 Identities = 344/586 (58%), Positives = 406/586 (69%)

Query:    38 RSVLRKLSVNGRESNSKPTA---LRKKMIERLLSFERRALESKFSFKTPSAEMDNQVFGN 94
             +++LR +S N  +S+S  T     RK +  R LS  +    S+ S   P  +++N     
Sbjct:     4 KTILRSISFNDIDSDSTITESPEARKTLYNRSLS-GKGTQRSRIS---PG-DVENNFSIK 58

Query:    95 TMSFKDAEGGDQS---PGSYDFQDAKSHLPLEHGNQRYQAALRLQKVYKSFRTRRRLADC 151
              ++F   +   +        + + AK  L L  G+  YQAAL+LQKVY+SFRTRRRLADC
Sbjct:    59 PLTFMKEDDRYKMRIWKPVCENEHAKEFLALLLGDGTYQAALKLQKVYRSFRTRRRLADC 118

Query:   152 AVLAEQRWWKVLDFAELKRSSISFFDIDKNETALSRWSRARTRAAKVGKGLSKSEKARKL 211
             AV+ EQRWWKVLDFAELKRSSISFF+I+K ETA+SRWSRARTRAAKVGKGLSK EKARKL
Sbjct:   119 AVVVEQRWWKVLDFAELKRSSISFFEIEKQETAVSRWSRARTRAAKVGKGLSKDEKARKL 178

Query:   212 ALQHWLEAIDPRHRYGHNLQFYYVTWLHCESQQPFFYWLDIGAGKEVNLERCPRSKLQQQ 271
             ALQHWLEAIDPRHRYGHNLQFYY  WLHC+S+QPFFYWLDIG GKE+N ERCPRSKL QQ
Sbjct:   179 ALQHWLEAIDPRHRYGHNLQFYYHAWLHCDSKQPFFYWLDIGQGKELNHERCPRSKLYQQ 238

Query:   272 CIKYLGPTERMEYEVRIEDGKLIYKKSGTVLDSTKGPKDTKWIFVLSTSKTLYVGQKIKG 331
              IKYLGPTER  YEV IEDGKL+YK+SG VLD+ +GP D KWIFVLS SK LYVG K KG
Sbjct:   239 SIKYLGPTEREAYEVIIEDGKLMYKQSGIVLDTKEGPPDAKWIFVLSVSKILYVGMKKKG 298

Query:   332 NFQHSSFLAGGATLSAGRLVVDNGYLKAIWPHSGHYLPTEENFQAFMSFLREHNVDLTNV 391
             NFQHSSFLAGGATLSAGR+VVD+G LKA+WPHSGHYLPTEENFQAFMSFLRE+NVDL NV
Sbjct:   299 NFQHSSFLAGGATLSAGRIVVDDGVLKAVWPHSGHYLPTEENFQAFMSFLRENNVDLANV 358

Query:   392 KKSPEEEEEVAIKKSKSIHDNPLEVGISQDTEAADVKT--SAQEDIDSRKEGXXXXXXXX 449
             KK+P+EE+  A  K K +     E    +  +  D +T  S     ++  E         
Sbjct:   359 KKNPDEEDGEAPAKVKRMPSRIKETE-EEHCDFVDAETGFSPNTKPNNHAELQTLSRFHS 417

Query:   450 XXXXRDEVPRSSD-MIDICKTEALPESCSSEYQEHPSDDGYETAEESFLSEEDFMVSKKN 508
                  DE+P   D MI+        E    E  E PS+ GYETAEE+F++EE+F   K N
Sbjct:   418 KLSRLDEIPDEDDNMIE-------EEQDDEEEPETPSEQGYETAEETFIAEEEFTYPKSN 470

Query:   509 LFDEDAEENEKPVPKEKIMQRIDSHKGLKSYQLAQQLSSKWSTGAGPRIGCMRDYPSELQ 568
             LFDED E+ EKPV KEKIM+RIDSHKG+KSYQLA++L S+WSTGAGPRI CMRDYPSELQ
Sbjct:   471 LFDEDIEDYEKPVLKEKIMRRIDSHKGIKSYQLAERLHSRWSTGAGPRISCMRDYPSELQ 530

Query:   569 AQILELANLXXXXXXXXXXXXXXXXXVLAPNSVSREILAKSPLAPE 614
              ++LE A+L                   AP       L +SPLA E
Sbjct:   531 FRVLEQAHLSPRASSNSSKISP-----FAPVRTRGTSLGRSPLAEE 571




GO:0005516 "calmodulin binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2086819 AT3G13600 "AT3G13600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085161 AT3G52870 "AT3G52870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057765 AT2G26190 "AT2G26190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164655 AT5G57010 "AT5G57010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123817 EDA39 "AT4G33050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 623
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 95.9
smart0001526 IQ Short calmodulin-binding motif containing conse 94.17
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
Probab=95.90  E-value=0.0059  Score=40.35  Aligned_cols=20  Identities=25%  Similarity=0.537  Sum_probs=18.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhc
Q 006983          129 YQAALRLQKVYKSFRTRRRL  148 (623)
Q Consensus       129 ~~AA~~iQk~Yr~yRtRR~L  148 (623)
                      ++||++||+.||+|..|+++
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhc
Confidence            46999999999999999975



The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query623
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.5 bits (130), Expect = 8e-08
 Identities = 71/442 (16%), Positives = 133/442 (30%), Gaps = 151/442 (34%)

Query: 36  NERSVLRKLSVNGRESNSKPTALRKK--------------M---------IERLLSFERR 72
           N+  V  K +V+ R        LR+               +         ++  LS++  
Sbjct: 121 NDNQVFAKYNVS-RLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK-- 175

Query: 73  ALESKFSFK----------TPSAEMDN-QVFGNTMSFKDAEGGDQSPG-SYDFQDAKSHL 120
            ++ K  FK          +P   ++  Q     +        D S          ++ L
Sbjct: 176 -VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 121 PLEHGNQRYQAAL------RLQKVYKSFRTRRRLADCAVLAEQRWWKVLDFAELKRSSIS 174
                ++ Y+  L      +  K + +F        C +L   R+ +V DF         
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-----CKILLTTRFKQVTDF--------- 280

Query: 175 FFDIDKNETALSRWSRARTRAAKVGKGLSKSEKARKLALQHWL---------EA--IDPR 223
                     LS  +            L+  E    L    +L         E    +PR
Sbjct: 281 ----------LSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPR 328

Query: 224 H--RYGHNLQFYYVTWLHCESQQPFFYWLDIGAGKEVNLERCPRSKLQQQCIKYLGPTE- 280
                  +++    TW           W      K VN ++   + + +  +  L P E 
Sbjct: 329 RLSIIAESIRDGLATWD---------NW------KHVNCDK--LTTIIESSLNVLEPAEY 371

Query: 281 RMEYE--------VRI--------------EDGKLI----YKKSGTVLDSTKGPKDTKWI 314
           R  ++          I               D  ++    +K S  +++  K PK++  I
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVE--KQPKEST-I 426

Query: 315 FVLSTSKTLYVGQKIKGNFQ---HSSFLA---GGATLSAGRLVVDN--GYLKAIWPHSGH 366
            + S    +Y+  K+K   +   H S +       T  +  L+      Y    + H GH
Sbjct: 427 SIPS----IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYSHIGH 479

Query: 367 YLPTEENFQAFMSFLREHNVDL 388
           +L   E+ +    F R   +D 
Sbjct: 480 HLKNIEHPERMTLF-RMVFLDF 500


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query623
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 95.9
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 95.76
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 92.37
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 91.24
4dck_A168 Sodium channel protein type 5 subunit alpha; IQ-mo 85.91
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 81.53
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
Probab=95.90  E-value=0.0048  Score=44.53  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhccC
Q 006983          127 QRYQAALRLQKVYKSFRTRRRLAD  150 (623)
Q Consensus       127 ~~~~AA~~iQk~Yr~yRtRR~Lad  150 (623)
                      +.+.||++||+.||+|+-||.+..
T Consensus         4 ~Ee~aA~vIQrA~R~yl~rr~~~~   27 (31)
T 2l53_B            4 SEEVSAMVIQRAFRRHLLQRSLKH   27 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            346799999999999999998764



>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00