Citrus Sinensis ID: 006994

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620--
MAHQLIASVPAANFTRLQPRSCISSVGSLNISNSNGFRASPVQCTAANATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLINL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccEEccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHccccHHHHHcHHHHHHHHccccccHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccc
cHHHHHcHccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcEcccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHccc
mahqliasvpaanftrlqprscissvgslnisnsngfraspvqctaANATSVCEKAIsnrrsanyqpsmwgydYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLqrlgvsyhFEDEIKRFLSRIYNernsrssyhakekqESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKhnnndddgYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWwrktglgelhFARDRIMENFFWALGevwepqfgycrrmSTKANALITTIDDVYDVYGTLDELELFTNAVErwdvnamdqlPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWyssgyiptleeymdnawisvsGPVILLHAYtlianpptkEALQFLeeypniirwpSMIFRLANdlatssdevkrgdvpkAIQCYmhetgasesDAREHIRDLITATWMKmnskdgdenpdhlllsNNFIRFAINLARMAQctyqngdghtiqhksknrvlpllvhpvslinl
mahqliasvpaanftrlqprSCISSVGSLNISNSNGFRASPVQCTAANATSVCEKAisnrrsanyqpSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNErnsrssyhakekqeSSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELkyvsrwwrKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLatssdevkrgdVPKAIQCYMhetgasesdarEHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQhksknrvlpllvhpvslinl
MAHQLIASVPAANFTRLQPRSCISSVGSLNISNSNGFRASPVQCTAANATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIlalyeaayllveeeSNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLINL
*************FT*L***SCISSVGSLNI*****FRASPVQCTAANATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYN*****************LYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLAT*********VPKAIQCYMH***********HIRDLITATWMK***********HLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSL***
*********PA***T****************************************************SMWGYDYLQSLSNE*************KGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLIN*
MAHQLIASVPAANFTRLQPRSCISSVGSLNISNSNGFRASPVQCTAANATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERN************SSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLINL
***************************SLN**********PVQCTA************NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLI*L
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAHQLIASVPAANFTRLQPRSCISSVGSLNISNSNGFRASPVQCTAANATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVxxxxxxxxxxxxxxxxxxxxxKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLINL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query622 2.2.26 [Sep-21-2011]
Q8L5K4600 Gamma-terpinene synthase, N/A no 0.942 0.976 0.611 0.0
Q93X23597 Myrcene synthase, chlorop N/A no 0.951 0.991 0.571 0.0
Q6PWU2590 (-)-alpha-terpineol synth no no 0.934 0.984 0.564 0.0
B3TPQ7592 Alpha-terpineol synthase, N/A no 0.882 0.927 0.530 1e-170
G1JUH1607 (-)-camphene/tricyclene s N/A no 0.942 0.965 0.478 1e-163
A7IZZ1622 (-)-limonene synthase, ch N/A no 0.937 0.937 0.469 1e-153
Q8L5K3606 (R)-limonene synthase 1 O N/A no 0.916 0.940 0.459 1e-152
Q9LRZ6598 Beta-myrcene/(E)-beta-oci yes no 0.879 0.914 0.484 1e-152
Q9ZUH4591 Tricyclene synthase, chlo no no 0.900 0.947 0.471 1e-152
A4FVP2565 Tricyclene synthase, chlo no no 0.892 0.982 0.489 1e-151
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function desciption
 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/630 (61%), Positives = 474/630 (75%), Gaps = 44/630 (6%)

Query: 1   MAHQLIASVPAA-NFTRLQPRSCISSVGSLNISNS-NGFRA--SPVQCTAANATSVCEKA 56
           MA  L++S+PAA NFTRL          SL +S+  NGF    + VQ   A +TS  +  
Sbjct: 1   MALNLLSSLPAACNFTRL----------SLPLSSKVNGFVPPITQVQYPMAASTSSIKPV 50

Query: 57  ISN--RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLE--NKEVDYVDA 112
                RRSA+Y P++W +DY+QSL ++Y  ESYA+++EKLK +V  ML+  NK VD +D 
Sbjct: 51  DQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVD-LDP 109

Query: 113 LHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLL 172
           LHQLE++DNL RLGVSYHFEDEIKR L RI+N+  ++S           LYA AL+FR+L
Sbjct: 110 LHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNKS-----------LYARALKFRIL 158

Query: 173 RQHGFDMHAQDVRVAVGTLSLFMDEKGKLK-SCLGDDIKGILALYEAAYLLVEEESNIFN 231
           RQ+G+    ++      T S FMDEKG  K S   D+ KG+LALYEAAYLLVEEES+IF 
Sbjct: 159 RQYGYKTPVKE------TFSRFMDEKGSFKLSSHSDECKGMLALYEAAYLLVEEESSIFR 212

Query: 232 EAINFTTTHLKEYV-KHN-NNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD 289
           +AI FTT +LKE+V KH+ + +D+ YL TLV+HALELPLHWRM RLEARWFID+Y+ GPD
Sbjct: 213 DAIRFTTAYLKEWVAKHDIDKNDNEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPD 272

Query: 290 VNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWE 348
           +N +L+ELAK+D+N VQA HQE+LKYVSRWW+KTGLGE L+FARDR++ENFFW +G+++E
Sbjct: 273 MNPILLELAKVDYNIVQAVHQEDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFE 332

Query: 349 PQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFL 408
           PQFGYCRRMS   N L+T+IDDVYDVYGTLDELELFT+AVERWD    +QLPYYMKLCF 
Sbjct: 333 PQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATTTEQLPYYMKLCFH 392

Query: 409 VLHNSTNEMAFDVLKKQGVH-IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAW 467
            L+NS NEM F  L+ Q V  IIPYLKKAWAD CKS+L+EAKWY+SGYIPTL+EYM+NAW
Sbjct: 393 ALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAW 452

Query: 468 ISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDV 527
           ISV+ PV+LLHAY   ANP TKEAL+FL++ P+IIR  SMI RL +DL TSSDE+KRGDV
Sbjct: 453 ISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDV 512

Query: 528 PKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLAR 587
           PK+IQCYMHETG SE +AREHIRDLI  TWMKMNS      P    L + FI  A+NL R
Sbjct: 513 PKSIQCYMHETGVSEDEAREHIRDLIAETWMKMNSARFGNPP---YLPDVFIGIAMNLVR 569

Query: 588 MAQCTYQNGDGHTIQHKSKNRVLPLLVHPV 617
           M+QC Y  GDGH +Q  +K+RVL L + P+
Sbjct: 570 MSQCMYLYGDGHGVQENTKDRVLSLFIDPI 599
Monoterpene synthase which catalyzes the conversion of geranyl diphosphate to gamma-terpinene and the minor products limonene, alpha-pinene, beta-pinene, alpha-terpinolene, alpha-thujene, alpha-terpinene, myrcene and sabinene.
Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 1EC: 4
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|G1JUH1|TPS3_SOLLC (-)-camphene/tricyclene synthase, chloroplastic OS=Solanum lycopersicum GN=TPS3 PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ1|TPS1_CANSA (-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function description
>sp|Q9LRZ6|MYRS2_ARATH Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZUH4|TPSA_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1 Back     alignment and function description
>sp|A4FVP2|TPS03_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query622
61161985617 (E)-beta-ocimene synthase [Citrus unshiu 0.974 0.982 0.830 0.0
61161981602 monoterpene synthase [Citrus unshiu] 0.943 0.975 0.614 0.0
75245637600 RecName: Full=Gamma-terpinene synthase, 0.942 0.976 0.611 0.0
49659441600 gamma-terpinene synthase [Citrus unshiu] 0.937 0.971 0.612 0.0
49659439600 gamma-terpinene synthase [Citrus unshiu] 0.937 0.971 0.611 0.0
322424199602 pinene synthase [Citrus hystrix] 0.943 0.975 0.600 0.0
152962686602 beta-pinene synthase [Citrus jambhiri] 0.943 0.975 0.598 0.0
21435705602 (-)-beta-pinene synthase [Citrus limon] 0.943 0.975 0.598 0.0
49659443602 beta-pinene synthase [Citrus unshiu] 0.943 0.975 0.595 0.0
75249335597 RecName: Full=Myrcene synthase, chloropl 0.951 0.991 0.571 0.0
>gi|61161985|dbj|BAD91046.1| (E)-beta-ocimene synthase [Citrus unshiu] Back     alignment and taxonomy information
 Score = 1048 bits (2711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/626 (83%), Positives = 562/626 (89%), Gaps = 20/626 (3%)

Query: 1   MAHQLIASVPAANFTRLQ-PRSCISSVGSLNIS--NSNGFRASPVQCTAANATSVCEKAI 57
           MAHQL+ SVPA   TRLQ PRS ISS+GS +IS  NSNGF ASP+QC +A  T V +KAI
Sbjct: 1   MAHQLMTSVPA--LTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSA--TKVRDKAI 56

Query: 58  S-NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLEN-KEVD-YVDALH 114
           + NRRSANYQPSMW YDYLQSLSN YV ES AQRIEKLKGEVRLML+N KEVD YVDALH
Sbjct: 57  NDNRRSANYQPSMWSYDYLQSLSNGYVGESCAQRIEKLKGEVRLMLDNYKEVDDYVDALH 116

Query: 115 QLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSR--SSYHAKEKQESSLYAVALEFRLL 172
            LEIVDNLQRLGVSYHFE EIKRFL+ IYN+RNSR  S+YHAKE QES LYA +LEFRLL
Sbjct: 117 CLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLL 176

Query: 173 RQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNE 232
           RQHG+D+HA       GTLS FMDEKGK KSCLGDDIKGILALYEAAYLL EEES IF+E
Sbjct: 177 RQHGYDIHAH------GTLSSFMDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHE 230

Query: 233 AINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQ 292
           AINFTTTHL+EYVK  +NDDDGY S LV HALELPLHWRMVRLEARWFID+Y+RG D+N 
Sbjct: 231 AINFTTTHLEEYVK-KHNDDDGYFSALVNHALELPLHWRMVRLEARWFIDVYERGTDMNP 289

Query: 293 VLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFG 352
           VLVELAKLDFN+VQA HQ+ELKYVS WWRKTGLGELHFARDRI+ENFFWALGE+WEPQFG
Sbjct: 290 VLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRILENFFWALGEIWEPQFG 349

Query: 353 YCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHN 412
           YCRRMSTK NALITTIDDVYDVYGTLDELE FTNAVERWDVNAMDQLPYYMKLCF VLH+
Sbjct: 350 YCRRMSTKVNALITTIDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKLCFHVLHS 409

Query: 413 STNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSG 472
           STNEMAFD LK QGVH++PYLKKAWADMCKSFLLEAKWYSSGYIPTL+EY++NAW+SVSG
Sbjct: 410 STNEMAFDTLKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSG 469

Query: 473 PVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQ 532
           PVILLHAYTLIANP  +EALQFL+EYP+IIRWPSMIFRLANDLATSSDEVKRGDVPKAIQ
Sbjct: 470 PVILLHAYTLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQ 529

Query: 533 CYMHETGASESDAREHIRDLITATWMKMNSK-DGDENPDHLLLSNNFIRFAINLARMAQC 591
           CYMHETGASESDAR HIRDLITA WMKMN+K +GDENPDHLLL NNF++FA+NLARMAQC
Sbjct: 530 CYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQC 589

Query: 592 TYQNGDGHTIQHKSKNRVLPLLVHPV 617
           TYQNGD HT+Q  SKNRVLPLL+HP+
Sbjct: 590 TYQNGDRHTVQDNSKNRVLPLLIHPI 615

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|61161981|dbj|BAD91045.1| monoterpene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|75245637|sp|Q8L5K4.1|GTPS_CITLI RecName: Full=Gamma-terpinene synthase, chloroplastic; Short=ClgammaTS; Flags: Precursor gi|21435701|gb|AAM53943.1|AF514286_1 gamma-terpinene synthase [Citrus limon] Back     alignment and taxonomy information
>gi|49659441|dbj|BAD27259.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|49659439|dbj|BAD27258.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|322424199|gb|ADX01381.1| pinene synthase [Citrus hystrix] Back     alignment and taxonomy information
>gi|152962686|dbj|BAF73933.1| beta-pinene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|21435705|gb|AAM53945.1|AF514288_1 (-)-beta-pinene synthase [Citrus limon] Back     alignment and taxonomy information
>gi|49659443|dbj|BAD27260.1| beta-pinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|75249335|sp|Q93X23.1|MYRS_QUEIL RecName: Full=Myrcene synthase, chloroplastic; Flags: Precursor gi|14331015|emb|CAC41012.1| putative chloroplast terpene synthase [Quercus ilex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query622
UNIPROTKB|Q8L5K4600 Q8L5K4 "Gamma-terpinene syntha 0.940 0.975 0.591 9.1e-187
UNIPROTKB|B3TPQ7592 B3TPQ7 "Alpha-terpineol syntha 0.715 0.751 0.544 2.1e-156
TAIR|locus:2086004598 AT3G25810 [Arabidopsis thalian 0.879 0.914 0.475 7.2e-139
TAIR|locus:2047510591 TPS10 "terpene synthase 10" [A 0.890 0.937 0.462 5.8e-137
TAIR|locus:2129101565 TPS03 "terpene synthase 03" [A 0.858 0.945 0.492 4.1e-136
TAIR|locus:2829283600 TPS-CIN ""terpene synthase-lik 0.876 0.908 0.465 4.2e-134
TAIR|locus:2086014600 TPS-CIN ""terpene synthase-lik 0.876 0.908 0.465 4.2e-134
UNIPROTKB|Q672F7595 EBOS "Tricyclene synthase EBOS 0.713 0.746 0.472 1.3e-128
UNIPROTKB|J7LQ09542 J7LQ09 "Trans-alpha-bergamoten 0.782 0.898 0.477 6.8e-127
UNIPROTKB|J7LH11546 J7LH11 "(+)-epi-alpha-bisabolo 0.824 0.939 0.443 5e-115
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
 Score = 1811 (642.6 bits), Expect = 9.1e-187, P = 9.1e-187
 Identities = 373/631 (59%), Positives = 464/631 (73%)

Query:     1 MAHQLIASVPAA-NFTRLQPRSCISSVGSLNISNS-NGF--RASPVQCTAANATSVCEKA 56
             MA  L++S+PAA NFTRL          SL +S+  NGF    + VQ   A +TS  +  
Sbjct:     1 MALNLLSSLPAACNFTRL----------SLPLSSKVNGFVPPITQVQYPMAASTSSIKPV 50

Query:    57 ISN--RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLE--NKEVDYVDA 112
                  RRSA+Y P++W +DY+QSL ++Y  ESYA+++EKLK +V  ML+  NK VD +D 
Sbjct:    51 DQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVD-LDP 109

Query:   113 LHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLL 172
             LHQLE++DNL RLGVSYHFEDEIKR L RI+N+  ++S           LYA AL+FR+L
Sbjct:   110 LHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNKS-----------LYARALKFRIL 158

Query:   173 RQHGFDMHAQDVRVAVGTLSLFMDEKGKLK-SCLGDDIKGIXXXXXXXXXXXXXXSNIFN 231
             RQ+G+    ++      T S FMDEKG  K S   D+ KG+              S+IF 
Sbjct:   159 RQYGYKTPVKE------TFSRFMDEKGSFKLSSHSDECKGMLALYEAAYLLVEEESSIFR 212

Query:   232 EAINFTTTHLKEYV-KHN-NNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPD 289
             +AI FTT +LKE+V KH+ + +D+ YL TLV+HALELPLHWRM RLEARWFID+Y+ GPD
Sbjct:   213 DAIRFTTAYLKEWVAKHDIDKNDNEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPD 272

Query:   290 VNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWE 348
             +N +L+ELAK+D+N VQA HQE+LKYVSRWW+KTGLGE L+FARDR++ENFFW +G+++E
Sbjct:   273 MNPILLELAKVDYNIVQAVHQEDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFE 332

Query:   349 PQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFL 408
             PQFGYCRRMS   N L+T+IDDVYDVYGTLDELELFT+AVERWD    +QLPYYMKLCF 
Sbjct:   333 PQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATTTEQLPYYMKLCFH 392

Query:   409 VLHNSTNEMAFDVLKKQGVH-IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAW 467
              L+NS NEM F  L+ Q V  IIPYLKKAWAD CKS+L+EAKWY+SGYIPTL+EYM+NAW
Sbjct:   393 ALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAW 452

Query:   468 ISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDV 527
             ISV+ PV+LLHAY   ANP TKEAL+FL++ P+IIR  SMI RL +DL TSSDE+KRGDV
Sbjct:   453 ISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDV 512

Query:   528 PKAIQCYMHETGASESDAREHIRDLITATWMKMNS-KDGDENPDHLLLSNNFIRFAINLA 586
             PK+IQCYMHETG SE +AREHIRDLI  TWMKMNS + G  NP +L   + FI  A+NL 
Sbjct:   513 PKSIQCYMHETGVSEDEAREHIRDLIAETWMKMNSARFG--NPPYL--PDVFIGIAMNLV 568

Query:   587 RMAQCTYQNGDGHTIQHKSKNRVLPLLVHPV 617
             RM+QC Y  GDGH +Q  +K+RVL L + P+
Sbjct:   569 RMSQCMYLYGDGHGVQENTKDRVLSLFIDPI 599
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129101 TPS03 "terpene synthase 03" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q672F7 EBOS "Tricyclene synthase EBOS, chloroplastic" [Lotus japonicus (taxid:34305)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LRZ6MYRS2_ARATH4, ., 2, ., 3, ., 1, 50.48400.87940.9147yesno
Q8L5K4GTPS_CITLI4, ., 2, ., 3, ., 1, 1, 40.61110.94210.9766N/Ano
B3TPQ7ATESY_MAGGA4, ., 2, ., 3, ., 1, 1, 20.53090.88260.9273N/Ano
Q93X23MYRS_QUEIL4, ., 2, ., 3, ., 1, 50.57160.95170.9916N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.963
3rd Layer4.2.3.27LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-106
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-101
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 2e-63
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 3e-50
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-33
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 2e-26
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  670 bits (1730), Expect = 0.0
 Identities = 267/563 (47%), Positives = 361/563 (64%), Gaps = 27/563 (4%)

Query: 60  RRSANYQPSMWGYDYLQSLSNEYVVES-YAQRIEKLKGEVRLMLENKEVDYVDALHQLEI 118
           R SAN+ PS+WG D+  SLS++Y  E    + IE+LK EVR MLE+     VD   +L +
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLED-SEYPVDLFERLWL 59

Query: 119 VDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFD 178
           +D LQRLG+SYHFEDEIK  L  IY     R      E  E  LY  AL FRLLRQHG++
Sbjct: 60  IDRLQRLGISYHFEDEIKEILDYIYRYWTER-----GESNEDDLYTTALGFRLLRQHGYN 114

Query: 179 MHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTT 238
           + + DV         F DE GK K  L  D+KG+L+LYEA++L    E  I +EA++FTT
Sbjct: 115 V-SSDV------FKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGED-ILDEALSFTT 166

Query: 239 THLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELA 298
            HL+E ++ N   D   LS  +E+ALE+PLH  + RLEARW+I+ Y++  D N+ L+ELA
Sbjct: 167 KHLEEKLESNWIID-PDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELA 225

Query: 299 KLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRM 357
           KLDFN +QA HQEELK +SRWW+   L   L FARDR++E +FWA G  +EPQ+   R  
Sbjct: 226 KLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIA 285

Query: 358 STKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEM 417
             K  ALIT IDD YDVYGTL+ELELFT AVERWD++A+DQLP YMK+ F  L N+ NE+
Sbjct: 286 LAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEI 345

Query: 418 AFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILL 477
             ++LK+ G +++PYLK+AW D+ K++L+EAKW   GY+PT EEYM+NA +S+    +LL
Sbjct: 346 EEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLL 405

Query: 478 HAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHE 537
            ++  + +  T+EA ++LE  P ++R  S I RL ND+AT  DE+KRGDV  +I+CYM E
Sbjct: 406 TSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKE 465

Query: 538 TGASESDAREHIRDLITATWMKMNS---KDGDENPDHLLLSNNFIRFAINLARMAQCTYQ 594
            G SE +ARE I+ +I   W ++N    K   + P  +       +  +NLAR+    Y+
Sbjct: 466 YGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIK------QRFLNLARVIDVFYK 519

Query: 595 NGDGHTIQHKS-KNRVLPLLVHP 616
            GDG T      K+ +  LL  P
Sbjct: 520 EGDGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 622
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.96
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.82
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.5
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.3
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 88.64
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 83.43
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 80.47
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.8e-151  Score=1271.88  Aligned_cols=536  Identities=49%  Similarity=0.822  Sum_probs=511.5

Q ss_pred             CCCCCCCCCCCCcCccccCCchhhhh-HHHHHHHHHHHHHHHHhhcc--cccccChhhhHHHHHHHHHhCCccccHHHHH
Q 006994           60 RRSANYQPSMWGYDYLQSLSNEYVVE-SYAQRIEKLKGEVRLMLENK--EVDYVDALHQLEIVDNLQRLGVSYHFEDEIK  136 (622)
Q Consensus        60 r~~~~~~ps~w~~~fl~~~~~~~~~~-~~~~~~~~lk~~v~~~l~~~--~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~  136 (622)
                      |++++||||+|||+|+++++.++... .+.+++++||++||+|+...  +   .|++++|++||+||||||+|||++||+
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~---~~~~~~l~liD~lqrLGi~~hF~~EI~   77 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYP---VDLFERLWLIDRLQRLGISYHFEDEIK   77 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccC---CCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence            78899999999995555544444333 78999999999999999863  3   699999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCcccccccccccccccccccccccccccccccchHHHHHHH
Q 006994          137 RFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALY  216 (622)
Q Consensus       137 ~~L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l~~dv~glL~Ly  216 (622)
                      ++|++||++|.+.+     +....||++|||+|||||||||+||| |      ||++|||++|+|++++.+||+||||||
T Consensus        78 ~~L~~i~~~~~~~~-----~~~~~dl~~~al~FRlLR~~Gy~vs~-d------vf~~F~~~~g~f~~~~~~d~~g~l~Ly  145 (542)
T cd00684          78 EILDYIYRYWTERG-----ESNEDDLYTTALGFRLLRQHGYNVSS-D------VFKKFKDEDGKFKESLTQDVKGMLSLY  145 (542)
T ss_pred             HHHHHHHHhhcccc-----cccCCCHHHHHHHHHHHHHcCCCcCH-H------HHhhhcCCCCCcCchhhhhhHHHHHHH
Confidence            99999999886543     12367999999999999999999999 9      999999999999999999999999999


Q ss_pred             HhhhhcCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHHhcCCCCCcHHHHH
Q 006994          217 EAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVE  296 (622)
Q Consensus       217 eAs~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLe  296 (622)
                      |||||+|||| +|||||++||++||++.++++ +.++++|+++|++||++|||+++||||||+||++|++++++|++|||
T Consensus       146 ~As~l~~~gE-~iLdeA~~ft~~~L~~~~~~~-~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLe  223 (542)
T cd00684         146 EASHLSFPGE-DILDEALSFTTKHLEEKLESN-WIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLE  223 (542)
T ss_pred             HHhhcCCCCc-HHHHHHHHHHHHHHHHHhhcc-CCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHH
Confidence            9999999999 999999999999999999764 55789999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHhHHHHHHHHHHHhhcCCCC-cchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcccccC
Q 006994          297 LAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVY  375 (622)
Q Consensus       297 lAklDFn~~Q~~hq~El~~lsrWwk~l~l~~-l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~fD~y  375 (622)
                      |||||||+||++||+||++++|||+++||.+ |||+|+|+++||||++|++|||++|.+|+++||+++|++++||+||.|
T Consensus       224 lAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~  303 (542)
T cd00684         224 LAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVY  303 (542)
T ss_pred             HHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccC
Confidence            9999999999999999999999999999999 899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006994          376 GTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGY  455 (622)
Q Consensus       376 gt~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~  455 (622)
                      ||.||++.||+||+|||.++++++|+|||+||.+|++++++++.++.+.+|++++.|++++|+++++||++||+|+++||
T Consensus       304 gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~  383 (542)
T cd00684         304 GTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGY  383 (542)
T ss_pred             CCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccchhhhh
Q 006994          456 IPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYM  535 (622)
Q Consensus       456 vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V~cyM  535 (622)
                      +||++|||++|++|+|++++++++++++|..+|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|+|||
T Consensus       384 vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ym  463 (542)
T cd00684         384 VPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYM  463 (542)
T ss_pred             CCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHH
Confidence            99999999999999999999999999999999999999987779999999999999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhc
Q 006994          536 HETGASESDAREHIRDLITATWMKMNSKDGDE-NPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLL  613 (622)
Q Consensus       536 kE~g~S~EeA~~~i~~mie~~wK~ln~e~l~~-~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~-~k~~I~~ll  613 (622)
                      +|+|+|+|+|+++++++|+++||+||++++++ ++    +|++|+++++|+||+++++|+++||||.|+. ||++|++||
T Consensus       464 ke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~----~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll  539 (542)
T cd00684         464 KEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSD----VPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLL  539 (542)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHh
Confidence            99999999999999999999999999999987 66    9999999999999999999999999999866 999999999


Q ss_pred             ccc
Q 006994          614 VHP  616 (622)
Q Consensus       614 ~ep  616 (622)
                      ++|
T Consensus       540 ~~p  542 (542)
T cd00684         540 FEP  542 (542)
T ss_pred             cCC
Confidence            998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-138
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-132
2j5c_A569 Rational Conversion Of Substrate And Product Specif 1e-128
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-123
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 4e-83
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 5e-83
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 6e-83
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-82
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-82
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-82
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-82
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 3e-82
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 2e-81
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 3e-81
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 2e-72
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 4e-72
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 3e-62
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 8e-18
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  487 bits (1253), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/560 (45%), Positives = 350/560 (62%), Gaps = 26/560 (4%)
Query: 60  RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
           RRSA+Y+P+ W YD+L S   +  +E Y  + +KL+ EVR  + N++ ++   L  LE++
Sbjct: 15  RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEF---LTLLELI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
           DN+QRLG+ Y FE +I+R L R      S   +    K  +SL+A AL FRLLRQHGF+ 
Sbjct: 72  DNVQRLGLGYRFESDIRRALDRFV----SSGGFDGVTK--TSLHATALSFRLLRQHGFE- 124
Query: 180 HAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTT 239
                 V+    S F D+ G     L +D K I               NI +EA  F  +
Sbjct: 125 ------VSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEG-ENILDEARVFAIS 177
Query: 240 HLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAK 299
           HLKE  +     +   L+  V HALELPLH R  RLEA W I+ Y++  D NQVL+ELA 
Sbjct: 178 HLKELSEEKIGKE---LAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAI 234
Query: 300 LDFNAVQAEHQEELKYVSRWWRKTGLG-ELHFARDRIMENFFWALGEVWEPQFGYCRRMS 358
           LD+N +Q+ +Q +L+  SRWWR+ GL  +LHFARDR++E+F+WA+G  +EPQ+  CR   
Sbjct: 235 LDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSV 294
Query: 359 TKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMA 418
            K  + +T IDD+YDVYGTLDELELFT+AVERWDVNA++ LP YMKLCFL L+N+ NE+A
Sbjct: 295 AKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIA 354
Query: 419 FDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH 478
           +D LK +G +I+PYL KAWAD+C +FL EAKW  +   PT ++Y  NAW S SGP+ L+ 
Sbjct: 355 YDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIF 414
Query: 479 AYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET 538
           AY  +     KE ++ L++Y +II  PS IFRL NDLA++S E+ RG+   ++ CYM   
Sbjct: 415 AYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTK 474
Query: 539 GASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDG 598
           G SE  A E + +LI  TW KMN     E     L +  F+  AINLAR + CTY NGD 
Sbjct: 475 GISEELATESVMNLIDETWKKMNK----EKLGGSLFAKPFVETAINLARQSHCTYHNGDA 530
Query: 599 HTIQHK-SKNRVLPLLVHPV 617
           HT   + ++ RVL ++  P+
Sbjct: 531 HTSPDELTRKRVLSVITEPI 550
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 0.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 0.0
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 0.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 0.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-159
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-155
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-150
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 3e-10
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-118
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 1e-32
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 6e-28
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 3e-13
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 5e-06
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
 Score =  540 bits (1392), Expect = 0.0
 Identities = 262/574 (45%), Positives = 361/574 (62%), Gaps = 26/574 (4%)

Query: 49  ATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVD 108
           +          RRSA+Y+P+ W YD+L S   +  +E Y  + +KL+ EVR  + N++ +
Sbjct: 4   SHHHHHHGSEARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAE 63

Query: 109 YVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALE 168
           +   L  LE++DN+QRLG+ Y FE +I+R L R  +      S       ++SL+A AL 
Sbjct: 64  F---LTLLELIDNVQRLGLGYRFESDIRRALDRFVS------SGGFDGVTKTSLHATALS 114

Query: 169 FRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESN 228
           FRLLRQHGF++            S F D+ G     L +D K IL+LYEA++L +E E N
Sbjct: 115 FRLLRQHGFEVSQ-------EAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGE-N 166

Query: 229 IFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGP 288
           I +EA  F  +HLKE  +     +   L+  V HALELPLH R  RLEA W I+ Y++  
Sbjct: 167 ILDEARVFAISHLKELSEEKIGKE---LAEQVNHALELPLHRRTQRLEAVWSIEAYRKKE 223

Query: 289 DVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLG-ELHFARDRIMENFFWALGEVW 347
           D NQVL+ELA LD+N +Q+ +Q +L+  SRWWR+ GL  +LHFARDR++E+F+WA+G  +
Sbjct: 224 DANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAF 283

Query: 348 EPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCF 407
           EPQ+  CR    K  + +T IDD+YDVYGTLDELELFT+AVERWDVNA++ LP YMKLCF
Sbjct: 284 EPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCF 343

Query: 408 LVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAW 467
           L L+N+ NE+A+D LK +G +I+PYL KAWAD+C +FL EAKW  +   PT ++Y  NAW
Sbjct: 344 LALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAW 403

Query: 468 ISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDV 527
            S SGP+ L+ AY  +     KE ++ L++Y +II  PS IFRL NDLA++S E+ RG+ 
Sbjct: 404 KSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGET 463

Query: 528 PKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLAR 587
             ++ CYM   G SE  A E + +LI  TW KMN     E     L +  F+  AINLAR
Sbjct: 464 ANSVSCYMRTKGISEELATESVMNLIDETWKKMN----KEKLGGSLFAKPFVETAINLAR 519

Query: 588 MAQCTYQNGDGHTIQH-KSKNRVLPLLVHPVSLI 620
            + CTY NGD HT     ++ RVL ++  P+   
Sbjct: 520 QSHCTYHNGDAHTSPDELTRKRVLSVITEPILPF 553
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query622
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.97
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.64
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.77
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 80.65
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 80.34
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-165  Score=1371.03  Aligned_cols=535  Identities=35%  Similarity=0.657  Sum_probs=509.4

Q ss_pred             ccccccCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccChhhhHHHHHHHHHhCCccccHH
Q 006994           54 EKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFED  133 (622)
Q Consensus        54 ~~~~~~r~~~~~~ps~w~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~  133 (622)
                      ++.+ .||++|||||+|||+||+++++++..+.+.+++++||++||+||.+..   .|++++|+|||+||||||+|||++
T Consensus        12 ~~~~-~R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~---~~~~~~L~lID~lqrLGi~~hF~~   87 (550)
T 3m00_A           12 EEEI-VRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATG---MKLADTLNLIDTIERLGISYHFEK   87 (550)
T ss_dssp             -----CCCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSS---CCHHHHHHHHHHHHHTTCGGGCHH
T ss_pred             cccc-CCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcc---cCHHHHHHHHHHHHHcCchhhhHH
Confidence            4455 899999999999999999988778888899999999999999997532   689999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCccccccccccCChHHHHHHHHHHHhcCcccccccccccccccccccccccccccccccchHHHH
Q 006994          134 EIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQDVRVAVGTLSLFMDEKGKLKSCLGDDIKGIL  213 (622)
Q Consensus       134 EI~~~L~~i~~~~~~~~~~~~r~~~~~dl~~tal~FRLLR~hGy~vS~~d~~~~~~vf~~F~d~~G~F~~~l~~dv~glL  213 (622)
                      ||+++|++||+.|.+          ..||++|||+|||||||||+||| |      ||++|+|++|+|++++.+||+|||
T Consensus        88 EI~~~L~~i~~~~~~----------~~dl~~~al~FRLLR~hGy~VS~-d------vf~~F~~~~G~F~~~l~~d~~glL  150 (550)
T 3m00_A           88 EIDDILDQIYNQNSN----------CNDLCTSALQFRLLRQHGFNISP-E------IFSKFQDENGKFKESLASDVLGLL  150 (550)
T ss_dssp             HHHHHHHHHHHHCCC----------CSSHHHHHHHHHHHHHTTCCCCG-G------GGGGGBCTTSCBCGGGGGCHHHHH
T ss_pred             HHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHhcCCCCCh-H------HhhhccccCCCccccchhchHHHH
Confidence            999999999998753          37999999999999999999999 9      999999999999999999999999


Q ss_pred             HHHHhhhhcCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHH-HhcCCCCCcH
Q 006994          214 ALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFID-MYQRGPDVNQ  292 (622)
Q Consensus       214 ~LyeAs~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~Rlear~yI~-~Y~~~~~~n~  292 (622)
                      +|||||||++||| +|||||+.||++||++.+.+    ++++|+++|+|||++|||+++||||||+||+ +|++++++|+
T Consensus       151 ~LYeAs~l~~~gE-~iLdeA~~fs~~~L~~~~~~----~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~  225 (550)
T 3m00_A          151 NLYEASHVRTHAD-DILEDALAFSTIHLESAAPH----LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN  225 (550)
T ss_dssp             HHHHHHTTCCTTC-GGGTTHHHHHHHHHHHHGGG----CCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCH
T ss_pred             HHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHhc----cCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccH
Confidence            9999999999999 99999999999999998876    6788999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHhhhHHHHHHhHHHHHHHHHHHhhcCCCC-cchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhhhcc
Q 006994          293 VLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDV  371 (622)
Q Consensus       293 ~lLelAklDFn~~Q~~hq~El~~lsrWwk~l~l~~-l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~iiDD~  371 (622)
                      +||||||||||+||++||+||++++||||++||.+ |||||||++|||||++|++|||+||.+|++|||+++|++++||+
T Consensus       226 ~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~  305 (550)
T 3m00_A          226 VLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDT  305 (550)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999976 99999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHh
Q 006994          372 YDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWY  451 (622)
Q Consensus       372 fD~ygt~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~  451 (622)
                      ||+|||+|||+.||+||+|||++++++||+|||+||.+|+++++|++.++.+.+|+++++|++++|+++++||++||+|+
T Consensus       306 yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~  385 (550)
T 3m00_A          306 FDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWF  385 (550)
T ss_dssp             HHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888888999999999999999999999999


Q ss_pred             hcCCCCCHHhhhhhccccchHHHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCCccch
Q 006994          452 SSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAI  531 (622)
Q Consensus       452 ~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~~n~V  531 (622)
                      ++||+||+||||+||++|+|++++++++++|+ +.+|+++++|+.++|+|++++++|+||+|||+||++|++||+++|+|
T Consensus       386 ~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V  464 (550)
T 3m00_A          386 IEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGI  464 (550)
T ss_dssp             HHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHH
T ss_pred             hcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHH
Confidence            99999999999999999999999999898776 66999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccC-CCCCCchh-HHHHh
Q 006994          532 QCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNG-DGHTIQHK-SKNRV  609 (622)
Q Consensus       532 ~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~-D~~t~~~~-~k~~I  609 (622)
                      +|||+|+|+|+|+|+++++++|+++||+||++++++++    +|++|+++++|+||+++++|+++ ||||.|+. ||++|
T Consensus       465 ~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~----~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i  540 (550)
T 3m00_A          465 ECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTP----VSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHI  540 (550)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCS----SCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHH
Confidence            99999999999999999999999999999999999877    99999999999999999999998 99999985 99999


Q ss_pred             hhhccccccc
Q 006994          610 LPLLVHPVSL  619 (622)
Q Consensus       610 ~~ll~epi~~  619 (622)
                      ++||++|||+
T Consensus       541 ~~ll~~Pi~~  550 (550)
T 3m00_A          541 INLLVDSIKI  550 (550)
T ss_dssp             HHHHTCCCCC
T ss_pred             HHHhhCCCCC
Confidence            9999999986
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 622
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-130
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-126
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 2e-74
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 9e-66
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 5e-46
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 4e-32
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  384 bits (987), Expect = e-130
 Identities = 148/331 (44%), Positives = 207/331 (62%), Gaps = 7/331 (2%)

Query: 291 NQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEP 349
           N ++ ELAKL+FN +QA HQ+ELK +SRWW +    E L F RDR++E+FFWA+G     
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 350 QFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLV 409
           Q GY R+M+     L T IDD+YDVYGTLDELELFT+  +RWD  ++ +LPYYM+LC+  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 410 LHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWIS 469
           +HN  ++ A+D+LK+ G   + YL+K+  D+ +++  EAKWY SGY P+L+EY++ A IS
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 470 VSGPVILLHAYTLIANPPTKEA-LQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVP 528
           V+ P I+   Y   AN     A +  L +Y +I+    +I RL +DL TS  E+ RGDVP
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 529 KAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARM 588
           K IQCYM ET ASE +A EH++ LI   W  MN+      P      +  +  A N+ R+
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYP----FPDGMVAGAANIGRV 297

Query: 589 AQCTYQNGDGHTIQHKS-KNRVLPLLVHPVS 618
           AQ  Y +GDG  +QH      +  LL  P +
Sbjct: 298 AQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 328
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query622
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.94
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.22
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=7.1e-98  Score=784.60  Aligned_cols=325  Identities=45%  Similarity=0.822  Sum_probs=305.0

Q ss_pred             CcHHHHHHHHhhhHHHHHHhHHHHHHHHHHHhhcCCCC-cchhhhhhhHhHHHHhccccCCCccchhhhhhhchhhhhhh
Q 006994          290 VNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTI  368 (622)
Q Consensus       290 ~n~~lLelAklDFn~~Q~~hq~El~~lsrWwk~l~l~~-l~faRdRlve~Yfwa~a~~fEP~~s~~Ri~laK~~~li~ii  368 (622)
                      +|++||||||||||+||++||+||++++||||++||.+ |||+|||++|||||++|++|||+||.+|++|||++++++++
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999999999999999999987 99999999999999999999999999999999999999999


Q ss_pred             hcccccCCCHHHHHHHHHHHhhcCccccccCChhhHHHHHHHhhhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHH
Q 006994          369 DDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEA  448 (622)
Q Consensus       369 DD~fD~ygt~eEl~~ft~ai~rWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EA  448 (622)
                      ||+||+|||+||++.||+||+|||+++++.||+|||+||.++++++++++.++.+.+|+++++|++++|++++++|++||
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l~~ayl~Ea  160 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEA  160 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCHHhhhhhccccchHHHHHHHHHHHhCCCCC-hHHHHhhhhhhhHHHHHHHHHHHhcCcccchhhhhcCCC
Q 006994          449 KWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPT-KEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDV  527 (622)
Q Consensus       449 kW~~~g~vPtleEYl~~~~~SsG~~~ll~~~~~~~G~~l~-~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rGd~  527 (622)
                      ||+++||+||+||||+||.+|+|++++++++++++|+.++ +++++|+.++|+++++++.|+||+|||+++++|++||++
T Consensus       161 kW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~~E~~rg~~  240 (328)
T d1n1ba2         161 KWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDV  240 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CC
T ss_pred             HHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHHHHHhcCCc
Confidence            9999999999999999999999999999999999998755 557999999999999999999999999999999999999


Q ss_pred             ccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HH
Q 006994          528 PKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SK  606 (622)
Q Consensus       528 ~n~V~cyMkE~g~S~EeA~~~i~~mie~~wK~ln~e~l~~~~~~~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~-~k  606 (622)
                      +|+|+|||+|+|+|+|+|+++++++|+++||+||++++++++    +|++|+++++|+||+++++|+++||||.|+. ||
T Consensus       241 ~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~----vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~~~~k  316 (328)
T d1n1ba2         241 PKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYP----FPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTY  316 (328)
T ss_dssp             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCS----SCHHHHHHHHHHHHHHHHHTTTSCCC----CHHH
T ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHH
Confidence            999999999999999999999999999999999999999887    9999999999999999999999999999976 99


Q ss_pred             HHhhhhcccccc
Q 006994          607 NRVLPLLVHPVS  618 (622)
Q Consensus       607 ~~I~~ll~epi~  618 (622)
                      ++|++||++||.
T Consensus       317 ~~I~~ll~ePvs  328 (328)
T d1n1ba2         317 EHIAGLLFEPYA  328 (328)
T ss_dssp             HHHHHHHTSCCC
T ss_pred             HHHHHHhccCCC
Confidence            999999999984
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure