Citrus Sinensis ID: 006995

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620--
Protein Sequence
MALSRLRQPVIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccccccccccccEEEccccccccccEEEcccccccccEEEEEEEEcccccccccccEEEEEEcccEEEEEEccccEEEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEcccccccccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEccccEEEEEEccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHcccccccccccccccEEEHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEccccEEEEcccccEEEEEEccccEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccEEcccccEEEEEEcccEEEEEEEEccccccccEEEEEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccHHHcccccHcccccccccccHHHHccccccccccccccccccHHHcccccccccccccccccccccccccccccccccEEEEcccccccccHcEEEEEEEccccEEccccEEEEEEcccEEEEEccccccEEEEEEEcccccEEccccEEEEEccccccHHHHcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEHEEEccccEEcccccEEEEEcccEEEEEccccccEEEEEEEcccccEEccccEEEEEcccccccHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHEcccccccEEEHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHccccccEEcccccEEEEEcEccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHHcccccHHHHccccEEEEEccccccccccccccccccEEEEEcccEEccEEEEEEccccEEEEEcEEEEEEEEccEEEccccccc
Coil and Loop (DISEMBL)
malsrlrqPVIARTLSLFRARLslssfssstslarissgknsfvdvngillrplsstlapevhdsplklkmqigvrhfssselpshtvvgmpalsptmsqgNIAKWRKkegdkieiGDILCEIETDKATVEFESLEEGFLAKilvpegskdvpvgqpiaitvedaddiqhipatiaggaeakeqssthqdVKKEAVQETSasrintselpprvvlempalsptmnqgNIAKWRknegdkievgDVICEIETDKATLEFECLEEGYlakilapegskdvavgqpiaitvedpgdvgtvknsvtsgaevkgekethhdskdVVKVQkgsftkispSAKLLILEhgldasslqasgpygtllkGDVLAAIKsgkvssrisshtektspsplpqtstavspgsksdlelsdsfedfpnTQIRKVIARRLLEskqntphlylssdvvLDPLLSFRKELKekhntkvsVNDIVIKAVAVALKNvpeanaywdvekgeIVLCDAIDISIAVATEkglmtpivrnadqKSISAISMEVKELAEKARagklaphefqggtfsisnlgmfpvdqfcaiinppqagilavgrgnqvvepvigsdgnetpAVVTKMNLTLSADHRVFEGKVGGT
Flexible Loop (DISEMBL)
malsrlrqpvIARTLSLFRARLSlssfssstslarissgknsfVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAeakeqssthqdVKKEAVqetsasrintselpprvVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAItvedpgdvgtvkNSVTSgaevkgekethhdskdvvkvqkgsfTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKvssrisshtektspsplpqtstaVSPGSKSDLelsdsfedfpnTQIRKVIARRLLESkqntphlylssdvVLDPLLSFRKELkekhntkvsvndiVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVAtekglmtpivrnadqkSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVigsdgnetPAVVTKMNltlsadhrvfegkvggt
Low Complexity Region (SEG)
MALSRLRQPVIArtlslfrarlslssfssstslarissGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHlylssdvvldpllsFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT
Disordered region (IsUnstruct)
*********VIARTLSLFRARL*******************SFVDVNGILLRPLSSTL************MQIGV***************************IAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPAT******************************************************IAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE*********************************************AKLLILEHGLDASSLQASGPYGTLLKGDVLAAI************************************************QIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNA***********************LAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL**************
Disordered Region (DISOPRED)
**********************************************************************************LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDI*****************************ETSASRINTSELPPRVVLE**ALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE********************************************SAKLLILEHGLDASSLQASGPYGTLLKGDVLAA******************************************FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT
Disordered Region (DISEMBL)
MALSRLRQPVIARTLSLFRARLSLS*************GKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAG************************SRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSV****************KDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS**********************************ELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT
Disordered Region (DISPRO)
*A***LRQPVIARTLSLFRARLSLSSFSSSTSLARIS**********************************************PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD*********************************************RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP**************************************KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS******************************************FPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALSRLRQPVIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	622	2.2.26 [Sep-21-2011]
Q0WQF7	637	Dihydrolipoyllysine-resid	yes	no	0.985	0.962	0.655	0.0
P10515	647	Dihydrolipoyllysine-resid	yes	no	0.848	0.816	0.420	1e-107
Q8BMF4	642	Dihydrolipoyllysine-resid	yes	no	0.845	0.819	0.415	1e-107
P08461	632	Dihydrolipoyllysine-resid	yes	no	0.922	0.908	0.4	1e-106
P36413	635	Dihydrolipoyllysine-resid	yes	no	0.823	0.806	0.390	4e-99
Q8RWN9	539	Dihydrolipoyllysine-resid	no	no	0.633	0.730	0.408	2e-83
Q5M729	539	Dihydrolipoyllysine-resid	no	no	0.627	0.723	0.412	5e-82
O59816	483	Dihydrolipoyllysine-resid	yes	no	0.655	0.844	0.419	8e-80
O66119	440	Dihydrolipoyllysine-resid	yes	no	0.601	0.85	0.418	2e-79
Q1RJT3	418	Dihydrolipoyllysine-resid	yes	no	0.594	0.885	0.419	6e-78

>sp|Q0WQF7|OPD21_ARATH Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/629 (65%), Positives = 488/629 (77%), Gaps = 16/629 (2%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSL-ARISSGKNSFVD----VNGILLRPLS 55
           M L   R+  IART SL RARL    F+ ++   +R S+G     D     NG+  R  S
Sbjct: 1   MVLPLFRRAAIARTSSLLRARL----FAPASEFHSRFSNGLYHLDDKISSSNGV--RSAS 54

Query: 56  STLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIE 115
             L   + DS  K  ++ GV++FSS+   S TV+ MPALSPTMS GN+ KW KKEGDK+E
Sbjct: 55  IDLITRMDDSSPKPILRFGVQNFSSTGPISQTVLAMPALSPTMSHGNVVKWMKKEGDKVE 114

Query: 116 IGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATI 175
           +GD+LCEIETDKATVEFES EEGFLAKILV EGSKD+PV +PIAI VE+ DDI+++PATI
Sbjct: 115 VGDVLCEIETDKATVEFESQEEGFLAKILVTEGSKDIPVNEPIAIMVEEEDDIKNVPATI 174

Query: 176 AGGAEAKEQSSTHQDVK-KEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRK 234
            GG + KE++S HQ +K  E+ Q+ S+ + + S+LPP VVLEMPALSPTMNQGNIAKW K
Sbjct: 175 EGGRDGKEETSAHQVMKPDESTQQKSSIQPDASDLPPHVVLEMPALSPTMNQGNIAKWWK 234

Query: 235 NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV 294
            EGDKIEVGDVI EIETDKATLEFE LEEGYLAKIL PEGSKDVAVG+PIA+ VED   +
Sbjct: 235 KEGDKIEVGDVIGEIETDKATLEFESLEEGYLAKILIPEGSKDVAVGKPIALIVEDAESI 294

Query: 295 GTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGP 354
             +K+S    +EV   KE      D    +K  FTKISP+AKLLILEHGL+ASS++ASGP
Sbjct: 295 EAIKSSSAGSSEVDTVKEVPDSVVDKPTERKAGFTKISPAAKLLILEHGLEASSIEASGP 354

Query: 355 YGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDS-FEDFP 413
           YGTLLK DV+AAI S        S        P  +T +  S  SK  +  SD+ +EDFP
Sbjct: 355 YGTLLKSDVVAAIAS---GKASKSSASTKKKQPSKETPSKSSSTSKPSVTQSDNNYEDFP 411

Query: 414 NTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAV 473
           N+QIRK+IA+RLLESKQ  PHLYL SDVVLDPLL+FRKEL+E H  KVSVNDIVIKAVAV
Sbjct: 412 NSQIRKIIAKRLLESKQKIPHLYLQSDVVLDPLLAFRKELQENHGVKVSVNDIVIKAVAV 471

Query: 474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKEL 533
           AL+NV +ANA+WD EKG+IV+CD++DISIAVATEKGLMTPI++NADQKSISAIS+EVKEL
Sbjct: 472 ALRNVRQANAFWDAEKGDIVMCDSVDISIAVATEKGLMTPIIKNADQKSISAISLEVKEL 531

Query: 534 AEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD 593
           A+KAR+GKLAPHEFQGGTFSISNLGM+PVD FCAIINPPQAGILAVGRGN+VVEPVIG D
Sbjct: 532 AQKARSGKLAPHEFQGGTFSISNLGMYPVDNFCAIINPPQAGILAVGRGNKVVEPVIGLD 591

Query: 594 GNETPAVVTKMNLTLSADHRVFEGKVGGT 622
           G E P+VVTKMN+TLSADHR+F+G+VG +
Sbjct: 592 GIEKPSVVTKMNVTLSADHRIFDGQVGAS 620

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 2

>sp|P10515|ODP2_HUMAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 244/580 (42%), Positives = 333/580 (57%), Gaps = 52/580 (8%)

Query: 67  LKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETD 126
           L+L    G R++S   LP H  V +P+LSPTM  G IA+W KKEGDKI  GD++ E+ETD
Sbjct: 75  LQLLGSPGRRYYS---LPPHQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETD 131

Query: 127 KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIP-ATIAGGAEAKEQS 185
           KATV FESLEE ++AKILV EG++DVP+G  I ITV   +DI+     T+   A    Q+
Sbjct: 132 KATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAAPTPQA 191

Query: 186 STHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV 245
           +        A   T +++   S  PP + + +PALSPTM  G + +W K  G+K+  GD+
Sbjct: 192 APAPTPAATASPPTPSAQAPGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDL 251

Query: 246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-SVTSG 304
           + EIETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +   T  
Sbjct: 252 LAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEV 311

Query: 305 AEVKGEKETHHDSKDVVKVQ--------------------KGSFTKISPSAKLLILEHGL 344
            ++K +                                  KG    +SP AK L +E G+
Sbjct: 312 TDLKPQVPPPTPPPVAAVPPTPQPLAPTPSAPCPATPAGPKGRVF-VSPLAKKLAVEKGI 370

Query: 345 DASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSP--SPLPQTSTAVSPGSKSD 402
           D + ++ +GP G + K D+ + + S KV+   ++    T P  +P+P             
Sbjct: 371 DLTQVKGTGPDGRITKKDIDSFVPS-KVAPAPAAVVPPTGPGMAPVP------------- 416

Query: 403 LELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE--KHNTK 460
              +  F D P + IR+VIA+RL++SKQ  PH YLS DV +  +L  RKEL +  +  +K
Sbjct: 417 ---TGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSK 473

Query: 461 VSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQ 520
           +SVND +IKA A+A   VPEAN+ W      I     +D+S+AV+T  GL+TPIV NA  
Sbjct: 474 ISVNDFIIKASALACLKVPEANSSW--MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHI 531

Query: 521 KSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVG 580
           K +  I+ +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G
Sbjct: 532 KGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIG 591

Query: 581 RGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVG 620
                + P     G +   V + M++TLS DHRV +G VG
Sbjct: 592 ASEDKLVPADNEKGFD---VASMMSVTLSCDHRVVDGAVG 628

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8BMF4|ODP2_MOUSE Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlat PE=1 SV=2

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/577 (41%), Positives = 328/577 (56%), Gaps = 51/577 (8%)

Query: 69  LKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKA 128
           L+  +G     S  LP H  V +P+LSPTM  G IA+W KKEG+KI  GD++ E+ETDKA
Sbjct: 73  LRQLLGSPSRRSYSLPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKA 132

Query: 129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIP-ATIAGGAEAKEQSST 187
           TV FESLEE ++AKILVPEG++DVPVG  I ITVE   DI+     T+   A A  Q++ 
Sbjct: 133 TVGFESLEECYMAKILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDLAAAAAPQAAP 192

Query: 188 HQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVIC 247
                  A     ++    S  P  + + +PALSPTM  G + +W K  G+K+  GD++ 
Sbjct: 193 AAAPAPAAAPAAPSASAPGSSYPTHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLA 252

Query: 248 EIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN----SVTS 303
           EIETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +     VTS
Sbjct: 253 EIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGAPLCIIVEKQEDIAAFADYRPTEVTS 312

Query: 304 GAEVKGEKETHHDSKDVVKVQKGSFTK------------ISPSAKLLILEHGLDASSLQA 351
                        +      Q  + T             +SP AK L  E G+D + ++ 
Sbjct: 313 LKPQAAPPAPPPVAAVPPTPQPVAPTPSAAPAGPKGRVFVSPLAKKLAAEKGIDLTQVKG 372

Query: 352 SGPYGTLLKGDVLAAIKS---GKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDS 408
           +GP G ++K D+ + + S      ++ ++    + +P+P                  +  
Sbjct: 373 TGPEGRIIKKDIDSFVPSKAAPAAAAAMAPPGPRVAPAP------------------AGV 414

Query: 409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE--KHNTKVSVNDI 466
           F D P + IR+VIA+RL++SKQ  PH YLS DV +  +L  RKEL +  +   K+SVND 
Sbjct: 415 FTDIPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKELNKMLEGKGKISVNDF 474

Query: 467 VIKAVAVALKNVPEANAYWD---VEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSI 523
           +IKA A+A   VPEAN+ W    + +  +V     D+S+AV+T  GL+TPIV NA  K +
Sbjct: 475 IIKASALACLKVPEANSSWMDTVIRQNHVV-----DVSVAVSTPAGLITPIVFNAHIKGL 529

Query: 524 SAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGN 583
             I+ +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G   
Sbjct: 530 ETIASDVVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASE 589

Query: 584 QVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVG 620
             + P     G +  +V   M++TLS DHRV +G VG
Sbjct: 590 DKLIPADNEKGFDVASV---MSVTLSCDHRVVDGAVG 623

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P08461|ODP2_RAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Rattus norvegicus GN=Dlat PE=1 SV=3

 Score =  387 bits (994), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 250/625 (40%), Positives = 340/625 (54%), Gaps = 51/625 (8%)

Query: 18  FRARL-SLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVR 76
           FRAR  +L    +  +  R  SG  S+  V  +      S   P        L+  +G  
Sbjct: 18  FRARWATLKGPRTGPAAVRCGSGIPSY-GVRSLCGWSYGSATVPRNR----ILQQLLGSP 72

Query: 77  HFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLE 136
              S  LP H  V +P+LSPTM  G IA+W KKEG+KI  GD++ E+ETDKATV FESLE
Sbjct: 73  SRRSYSLPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKATVGFESLE 132

Query: 137 EGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAV 196
           E ++AKILVPEG++DVPVG  I ITVE   DI+         A A  Q++        A 
Sbjct: 133 ECYMAKILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDSATAATQAAPAPAAAPAAA 192

Query: 197 QETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATL 256
               ++    S  P  + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+
Sbjct: 193 PAAPSASAPGSSYPVHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATI 252

Query: 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN----SVTSGAEVKGEKE 312
            FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +     VTS         
Sbjct: 253 GFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKQEDIAAFADYRPTEVTSLKPQAPPPV 312

Query: 313 THHDSKDVVKVQKGSFTK------------ISPSAKLLILEHGLDASSLQASGPYGTLLK 360
               +      Q  + T             +SP AK L  E G+D + ++ +GP G ++K
Sbjct: 313 PPPVAAVPPIPQPLAPTPSAAPAGPKGRVFVSPLAKKLAAEKGIDLTQVKGTGPEGRIIK 372

Query: 361 GDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKV 420
            D+ + + +    +  ++       +P P                +  F D P + IR+V
Sbjct: 373 KDIDSFVPTKAAPAAAAAAPPGPRVAPTP----------------AGVFIDIPISNIRRV 416

Query: 421 IARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE--KHNTKVSVNDIVIKAVAVALKNV 478
           IA+RL++SKQ  PH YLS DV +  +L  RKEL +  +   K+SVND +IKA A+A   V
Sbjct: 417 IAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKELNKMLEGKGKISVNDFIIKASALACLKV 476

Query: 479 PEANAYWD---VEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAE 535
           PEAN+ W    + +  +V     D+S+AV+T  GL+TPIV NA  K +  I+ +V  LA 
Sbjct: 477 PEANSSWMDTVIRQNHVV-----DVSVAVSTPAGLITPIVFNAHIKGLETIASDVVSLAS 531

Query: 536 KARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGN 595
           KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G     + P     G 
Sbjct: 532 KAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIPADNEKGF 591

Query: 596 ETPAVVTKMNLTLSADHRVFEGKVG 620
           +  +V   M++TLS DHRV +G VG
Sbjct: 592 DVASV---MSVTLSCDHRVVDGAVG 613

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P36413|ODP2_DICDI Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=pdhC PE=1 SV=2

 Score =  362 bits (930), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 216/553 (39%), Positives = 312/553 (56%), Gaps = 41/553 (7%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLE-EGFLAKILVPE 147
           + MPALSP+M++GNI +W+KKEGD+I+ GD++ E+ETDKAT++F+  +  G+LAKIL+PE
Sbjct: 86  ITMPALSPSMTEGNIVQWKKKEGDQIKAGDVIAEVETDKATMDFQYEDGNGYLAKILIPE 145

Query: 148 GSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQ-ETSASRINT 206
           G+K + + +PIAI V   +DI+   + +     + + SST   V++EA + +  A + +T
Sbjct: 146 GTKGIEINKPIAIIVSKKEDIE---SAVKNYKPSSQASST--PVQEEAPKPKQEAPKKST 200

Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLE-EGY 265
              P   V+ MPALSP+M  G IA W K EGD+I+ GD I E+ETDKAT++F+  +  GY
Sbjct: 201 KTYPAHKVVGMPALSPSMETGGIASWTKKEGDQIKAGDAIAEVETDKATMDFQYEDGNGY 260

Query: 266 LAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKV-- 323
           LAKIL P G+  + + QP+ I V++  D     +             +   +        
Sbjct: 261 LAKILVPGGTSGIQINQPVCIIVKNKEDCDKFADYSVEEQSSSSSSSSQESTPSSSSSSS 320

Query: 324 ---------------QKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK 368
                          + G     +P+A+      G D S++  +GP   +LK DVL  + 
Sbjct: 321 QESTPSQSSSQQTTRKSGERIFATPAARFEASSKGYDLSAINGTGPNNRILKADVLEFV- 379

Query: 369 SGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLES 428
                       +K   +   Q  T  +    +    S  F D P++ IRKV A RL ES
Sbjct: 380 -----------PQKQEVAQQQQQQTTTTTKKPTTPTSSGEFTDIPHSNIRKVTAARLTES 428

Query: 429 KQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVE 488
           KQ  PH YL+ +  +D LL  R EL   +  K+SVND ++KA A AL++ P  N+ W  +
Sbjct: 429 KQTIPHYYLTMECRVDKLLKLRSELNAMNTVKISVNDFIVKASAAALRDNPVVNSTWTDQ 488

Query: 489 KGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQ 548
              I     IDI++AV T +GL TPIVR  D K +++IS  VK+LAEKA+ GKL P EF+
Sbjct: 489 --FIRRYHNIDINVAVNTPQGLFTPIVRGVDMKGLNSISTSVKQLAEKAQNGKLHPSEFE 546

Query: 549 GGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL 608
            GTF+ISNLGM  + QF A+INPPQA ILAVG     V  V+ +  +      T +++TL
Sbjct: 547 SGTFTISNLGMLGIKQFAAVINPPQAAILAVGTTETRV--VLSNKPDSPYETATILSVTL 604

Query: 609 SADHRVFEGKVGG 621
           S DHRV +G VG 
Sbjct: 605 SCDHRVIDGAVGA 617

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8RWN9|OPD22_ARATH Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2

 Score =  310 bits (795), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 180/441 (40%), Positives = 259/441 (58%), Gaps = 47/441 (10%)

Query: 205 NTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEG 264
           ++S+LPP   + MP+LSPTM +GNIA+W K EGDK+  G+V+CE+ETDKAT+E EC+EEG
Sbjct: 104 SSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEG 163

Query: 265 YLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSG-------------AEVKGEK 311
           +LAKI+  EG+K++ VG+ IAITVED  D+   K+   S              +  K EK
Sbjct: 164 FLAKIVKEEGAKEIQVGEVIAITVEDEDDIQKFKDYTPSSDTGPAAPEAKPAPSLPKEEK 223

Query: 312 ETHHDSKDVVKVQKGSFTK------ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA 365
                S    K+ K S          SP A+ L  ++ +  SS++ +GP G ++K DV  
Sbjct: 224 VEKPASAPEAKISKPSSAPSEDRIFASPLARKLAEDNNVPLSSIKGTGPEGRIVKADVED 283

Query: 366 AIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRL 425
            + SG         +++T+  P  Q  + V          +  + D P+TQIRKV A RL
Sbjct: 284 FLASG---------SKETTAKPSKQVDSKVP---------ALDYVDIPHTQIRKVTASRL 325

Query: 426 LESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNT----KVSVNDIVIKAVAVALKNVPEA 481
             SKQ  PH YL+ D  +D ++  R +L          ++SVND+VIKA A+AL+ VP+ 
Sbjct: 326 AFSKQTIPHYYLTVDTCVDKMMGLRSQLNSFQEASGGKRISVNDLVIKAAALALRKVPQC 385

Query: 482 NAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK 541
           N+ W  E   I     ++I++AV TE GL  P+V++AD+K +S I  EV+ LA+KA+   
Sbjct: 386 NSSWTDEY--IRQFKNVNINVAVQTENGLYVPVVKDADKKGLSTIGEEVRFLAQKAKENS 443

Query: 542 LAPHEFQGGTFSISNLGM-FPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAV 600
           L P +++GGTF++SNLG  F + QFCA+INPPQA ILA+G   + V P  G D      V
Sbjct: 444 LKPEDYEGGTFTVSNLGGPFGIKQFCAVINPPQAAILAIGSAEKRVVPGTGPDQYN---V 500

Query: 601 VTKMNLTLSADHRVFEGKVGG 621
            + M++TLS DHRV +G +G 
Sbjct: 501 ASYMSVTLSCDHRVIDGAIGA 521

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q5M729|OPD23_ARATH Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At1g54220 PE=1 SV=1

 Score =  306 bits (783), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 182/441 (41%), Positives = 257/441 (58%), Gaps = 51/441 (11%)

Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYL 266
           S+LPP   + MP+LSPTM +GNIA+W K EGDK+  G+V+CE+ETDKAT+E EC+EEGYL
Sbjct: 106 SDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGYL 165

Query: 267 AKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSG-------------AEVKGEKET 313
           AKI+  EGSK++ VG+ IAITVED  D+G  K+   S              A  K EK  
Sbjct: 166 AKIVKAEGSKEIQVGEVIAITVEDEEDIGKFKDYTPSSTADAAPTKAEPTPAPPKEEKVK 225

Query: 314 HHDSKDVVKVQK------GSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI 367
              S    K  K      G     SP A+ L  ++ +  S ++ +GP G ++K D+   +
Sbjct: 226 QPSSPPEPKASKPSTPPTGDRVFASPLARKLAEDNNVPLSDIEGTGPEGRIVKADIDEYL 285

Query: 368 -KSGK-VSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRL 425
             SGK  +++ S  T+  +P                    +  + D P++QIRKV A RL
Sbjct: 286 ASSGKGATAKPSKSTDSKAP--------------------ALDYVDIPHSQIRKVTASRL 325

Query: 426 LESKQNTPHLYLSSDVVLDPLLSFRKEL---KEKHNTK-VSVNDIVIKAVAVALKNVPEA 481
             SKQ  PH YL+ D  +D L++ R +L   KE    K +SVND+V+KA A+AL+ VP+ 
Sbjct: 326 AFSKQTIPHYYLTVDTCVDKLMALRSQLNSFKEASGGKRISVNDLVVKAAALALRKVPQC 385

Query: 482 NAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK 541
           N+ W  +   I     ++I++AV TE GL  P+V++AD+K +S I  EV+ LA+KA+   
Sbjct: 386 NSSWTDDY--IRQFKNVNINVAVQTENGLYVPVVKDADRKGLSTIGEEVRLLAQKAKENS 443

Query: 542 LAPHEFQGGTFSISNL-GMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAV 600
           L P +++GGTF++SNL G F + QFCA++NPPQA ILAVG   + V P  G D       
Sbjct: 444 LKPEDYEGGTFTVSNLGGPFGIKQFCAVVNPPQAAILAVGSAEKRVVPGNGPDQFN---F 500

Query: 601 VTKMNLTLSADHRVFEGKVGG 621
            + M +TLS DHRV +G +G 
Sbjct: 501 ASYMPVTLSCDHRVVDGAIGA 521

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O59816|ODP2_SCHPO Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lat1 PE=3 SV=1

 Score =  298 bits (763), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 193/460 (41%), Positives = 250/460 (54%), Gaps = 52/460 (11%)

Query: 191 VKKEA---VQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVIC 247
           VKK A   V    A    T   P   V+ MPALSPTM  GNI  ++K  GDKIE GDV+C
Sbjct: 29  VKKSALYPVMAKLARTYATKNYPAHTVINMPALSPTMTTGNIGAFQKKIGDKIEPGDVLC 88

Query: 248 EIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-------- 299
           EIETDKA ++FE  +EGYLAKIL   G+KDV VG+P+A+TVE+ GDV  + +        
Sbjct: 89  EIETDKAQIDFEQQDEGYLAKILIETGTKDVPVGKPLAVTVENEGDVAAMADFTIEDSSA 148

Query: 300 ---SVTSGAEV------KGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQ 350
              S  SG E       K  KET   S +V   ++G     SP A+ L  E  LD S ++
Sbjct: 149 KEPSAKSGEEKSAPSSEKQSKETSSPS-NVSGEERGDRVFASPLARKLAEEKDLDLSQIR 207

Query: 351 ASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTST------AVSPGSKSDLE 404
            SGP G ++K D+                 E   P   P+ S            S +D  
Sbjct: 208 GSGPNGRIIKVDI-----------------ENFKPVVAPKPSNEAAAKATTPAASAADAA 250

Query: 405 LSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHN--TKVS 462
               +ED P + +RK+IA RL ESK   PH Y++  V ++ ++  R  L    +   K+S
Sbjct: 251 APGDYEDLPLSNMRKIIASRLAESKNMNPHYYVTVSVNMEKIIRLRAALNAMADGRYKLS 310

Query: 463 VNDIVIKAVAVALKNVPEANAYWDVEKGEIVL-CDAIDISIAVATEKGLMTPIVRNADQK 521
           VND+VIKA   AL+ VPE NA W    G+ +     +DIS+AVAT  GL+TP++RN    
Sbjct: 311 VNDLVIKATTAALRQVPEVNAAW---MGDFIRQYKNVDISMAVATPSGLITPVIRNTHAL 367

Query: 522 SISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGR 581
            ++ IS   K+  ++AR  KL P E+QGGTF+ISNLGMFPVDQF AIINPPQA ILAVG 
Sbjct: 368 GLAEISTLAKDYGQRARNNKLKPEEYQGGTFTISNLGMFPVDQFTAIINPPQACILAVGT 427

Query: 582 GNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621
               V P   S   +   V   M  TLS+DHRV +G +  
Sbjct: 428 TVDTVVP--DSTSEKGFKVAPIMKCTLSSDHRVVDGAMAA 465

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O66119|ODP2_ZYMMO Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=pdhC PE=3 SV=2

 Score =  297 bits (761), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 251/442 (56%), Gaps = 68/442 (15%)

Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
           ++MPALSPTM +G +AKW   EGD ++ GD++ EIETDKA +EFE ++ G +AKIL PEG
Sbjct: 5   VKMPALSPTMTEGTLAKWLVKEGDAVKAGDILAEIETDKAIMEFETVDAGIIAKILVPEG 64

Query: 275 SKDVAVGQPIAITVEDPGDVGTVKNSVTS-------GAEVKGEKETHHDSKDVV------ 321
           S+++AVGQ IA+  E   DV  V  S +S        A+V  +KET  DS+ +       
Sbjct: 65  SENIAVGQVIAVMAEAGEDVSQVAASASSQISEPSEKADV-AQKETA-DSETISIDASLD 122

Query: 322 ------------------KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363
                               +K    K SP AK L  ++ +D   +  SGP+G ++K D+
Sbjct: 123 KAISNAGYGNKTENMTASYQEKAGRIKASPLAKRLAKKNHVDLKQVNGSGPHGRIIKADI 182

Query: 364 LAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQI-----R 418
            A I             E    S  P  ST  + G  +         D P+  I     R
Sbjct: 183 EAFI------------AEANQASSNPSVSTPEASGKIT--------HDTPHNSIKLSNMR 222

Query: 419 KVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEK---HNTKVSVNDIVIKAVAVAL 475
           +VIARRL ESKQN PH+YL+ DV +D LL  R EL E     N K+SVND++IKA A+AL
Sbjct: 223 RVIARRLTESKQNIPHIYLTVDVQMDALLKLRSELNESLAVQNIKISVNDMLIKAQALAL 282

Query: 476 KNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAE 535
           K  P  N  +D +  +++     DIS+AV+ E GL+TPI++ AD KS+SA+S+E+KEL  
Sbjct: 283 KATPNVNVAFDGD--QMLQFSQADISVAVSVEGGLITPILKQADTKSLSALSVEMKELIA 340

Query: 536 KARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGN 595
           +AR G+L P E+QGGT SISN+GMF + QF A+INPPQA ILA+G G +   P +  D  
Sbjct: 341 RAREGRLQPQEYQGGTSSISNMGMFGIKQFNAVINPPQASILAIGSGER--RPWVIDDAI 398

Query: 596 ETPAVVTKMNLTLSADHRVFEG 617
               V T   +T S DHRV +G
Sbjct: 399 TIATVAT---ITGSFDHRVIDG 417

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q1RJT3|ODP2_RICBR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1

 Score =  292 bits (747), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 182/434 (41%), Positives = 254/434 (58%), Gaps = 64/434 (14%)

Query: 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP 272
           + L MPALSPTM +GN+A+W K EGDKI  G+VI EIETDKAT+E E ++EG LAKI+ P
Sbjct: 3   IKLLMPALSPTMTEGNLARWLKKEGDKINPGEVIAEIETDKATMEVEAVDEGTLAKIIIP 62

Query: 273 EGSKDVAVGQPIAITVEDPGDVGTV-------------KNSVTSGAE------VKGEKET 313
           +GS++V V   IA+ +E+  ++  +             K  ++  AE      VK E  T
Sbjct: 63  QGSQNVPVNSLIAVLIEEGEELSGIEEFIAKNNSNSPKKEEISKPAETIAPQNVKEENIT 122

Query: 314 HHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVS 373
               ++ +KV    F   SP AK L     +    ++ SGP+G ++K DVL+  K G  S
Sbjct: 123 TASDQNNIKV----FA--SPLAKRLAKIQNVRIEEIKGSGPHGRIIKQDVLSH-KGG--S 173

Query: 374 SRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTP 433
             +S+     +P                     + +   PN  IRK+IA+RLLESKQ  P
Sbjct: 174 KALSNKIVSRNP---------------------EEYRLAPNNNIRKIIAKRLLESKQTVP 212

Query: 434 HLYLSSDVVLDPLLSFRKELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEK 489
           H YLS +  +D LL  R+++     +  + K+SVND +I AVA AL+ VP ANA W  + 
Sbjct: 213 HFYLSIECNVDKLLDIREDINKSFGDDKSAKISVNDFIILAVAKALQEVPNANASWGDDA 272

Query: 490 GEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQG 549
             I   + +DIS+AVA E GL+TPI+RNADQK+I  +S E+K L +KAR  KL P EFQG
Sbjct: 273 --IRYYNNVDISVAVAIENGLVTPIIRNADQKNIVDLSSEMKGLIKKARENKLTPEEFQG 330

Query: 550 GTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQ--VVEPVIGSDGNETPAVVTKMNLT 607
           G F+ISNLGM+ +  F AIINPPQ+ I+ VG  ++  +V+       N+  ++ T M++T
Sbjct: 331 GGFTISNLGMYGIKNFNAIINPPQSCIMGVGSSSKRAIVK-------NDQISIATIMDVT 383

Query: 608 LSADHRVFEGKVGG 621
           LSADHRV +G VG 
Sbjct: 384 LSADHRVVDGAVGA 397

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia bellii (strain RML369-C) (taxid: 336407)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	622
359486892	636	PREDICTED: dihydrolipoyllysine-residue a	0.991	0.970	0.747	0.0
296090376	659	unnamed protein product [Vitis vinifera]	0.991	0.936	0.747	0.0
255571622	633	dihydrolipoamide acetyltransferase compo	0.990	0.973	0.750	0.0
224100693	588	predicted protein [Populus trichocarpa]	0.909	0.962	0.772	0.0
356576335	628	PREDICTED: dihydrolipoyllysine-residue a	0.975	0.966	0.687	0.0
449441822	638	PREDICTED: dihydrolipoyllysine-residue a	0.985	0.960	0.691	0.0
449493259	638	PREDICTED: dihydrolipoyllysine-residue a	0.985	0.960	0.689	0.0
297816492	636	dihydrolipoamide S-acetyltransferase 3 [	0.985	0.963	0.673	0.0
388502998	627	unknown [Lotus japonicus]	0.979	0.971	0.684	0.0
5881965	637	dihydrolipoamide S-acetyltransferase [Ar	0.985	0.962	0.662	0.0

>gi|359486892|ref|XP_002262782.2| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Vitis vinifera]

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/622 (74%), Positives = 535/622 (86%), Gaps = 5/622 (0%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAP 60
           MALSRLR P+++R  SLFRAR+ LSS ++S SL   S+ + S VD +G LLRP S  + P
Sbjct: 1   MALSRLRHPIVSRAPSLFRARI-LSS-TASRSLPHTSTVQKSSVDGDGTLLRPASLLMVP 58

Query: 61  EVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDIL 120
            V D   KLK+Q+GVR+FSS+ELPSH V+GMPALSPTM+QGNIAKWRKKEGDKIE GD+L
Sbjct: 59  RVQDGSSKLKLQVGVRNFSSAELPSHMVLGMPALSPTMTQGNIAKWRKKEGDKIEPGDVL 118

Query: 121 CEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAE 180
           CEIETDKAT+EFESLEEGFLAKILV EGSKDVPVGQPIAITVED +DIQ +PA++AGG+ 
Sbjct: 119 CEIETDKATLEFESLEEGFLAKILVAEGSKDVPVGQPIAITVEDEEDIQKVPASVAGGSG 178

Query: 181 AKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKI 240
            +E+ S H++   E  Q+  +S INT+ELPP +VL MPALSPTMNQGNIAKWRK EGDKI
Sbjct: 179 VEEKKSKHENAGNEDKQQEMSSTINTAELPPHIVLGMPALSPTMNQGNIAKWRKKEGDKI 238

Query: 241 EVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNS 300
           EVGDVICEIETDKATLEFE LEEGYLAKI+APEGSKDVAVGQPIAITVEDP D+  VK S
Sbjct: 239 EVGDVICEIETDKATLEFESLEEGYLAKIVAPEGSKDVAVGQPIAITVEDPDDIEIVKAS 298

Query: 301 VTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLK 360
           V+SG+++K EK    +S++ V+ +K SFT+ISPSAKLLI E GLDAS+L+ASGP GTLLK
Sbjct: 299 VSSGSDIKKEKPQQQESRNEVRAEKSSFTRISPSAKLLITEFGLDASTLKASGPRGTLLK 358

Query: 361 GDVLAAIKSGKVSSRISSHTEKTSPSPL-PQTSTAVSPGSKSDLELSDSFEDFPNTQIRK 419
           GDVLAAIK+G + S  SS  +K  P P+  Q S + SP  +S L+ S+SFED PN+QIRK
Sbjct: 359 GDVLAAIKAG-IGSSSSSSKDKMPPPPVHSQASPSASP-ERSHLQQSESFEDMPNSQIRK 416

Query: 420 VIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVP 479
           VIA RLLESKQNTPHLYLSSDV+LDPLLSFRKELKEKH+ KVSVNDIVIKAVA+ALKNVP
Sbjct: 417 VIATRLLESKQNTPHLYLSSDVILDPLLSFRKELKEKHDVKVSVNDIVIKAVAMALKNVP 476

Query: 480 EANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARA 539
           EANAYW+ EKGE++L D++DISIAVATEKGLMTPIVRNADQK+IS+IS+EVKELAEKARA
Sbjct: 477 EANAYWNAEKGEVILSDSVDISIAVATEKGLMTPIVRNADQKTISSISIEVKELAEKARA 536

Query: 540 GKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPA 599
           GKL P+EFQGGTFSISNLGMFPVD FCAIINPPQ+GILAVGRGN+VVEPV+G DG E PA
Sbjct: 537 GKLKPNEFQGGTFSISNLGMFPVDHFCAIINPPQSGILAVGRGNKVVEPVVGGDGLEKPA 596

Query: 600 VVTKMNLTLSADHRVFEGKVGG 621
           VVTKMNLTLSADHRVF+GKVGG
Sbjct: 597 VVTKMNLTLSADHRVFDGKVGG 618

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090376|emb|CBI40195.3| unnamed protein product [Vitis vinifera]

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/622 (74%), Positives = 535/622 (86%), Gaps = 5/622 (0%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAP 60
           MALSRLR P+++R  SLFRAR+ LSS ++S SL   S+ + S VD +G LLRP S  + P
Sbjct: 24  MALSRLRHPIVSRAPSLFRARI-LSS-TASRSLPHTSTVQKSSVDGDGTLLRPASLLMVP 81

Query: 61  EVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDIL 120
            V D   KLK+Q+GVR+FSS+ELPSH V+GMPALSPTM+QGNIAKWRKKEGDKIE GD+L
Sbjct: 82  RVQDGSSKLKLQVGVRNFSSAELPSHMVLGMPALSPTMTQGNIAKWRKKEGDKIEPGDVL 141

Query: 121 CEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAE 180
           CEIETDKAT+EFESLEEGFLAKILV EGSKDVPVGQPIAITVED +DIQ +PA++AGG+ 
Sbjct: 142 CEIETDKATLEFESLEEGFLAKILVAEGSKDVPVGQPIAITVEDEEDIQKVPASVAGGSG 201

Query: 181 AKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKI 240
            +E+ S H++   E  Q+  +S INT+ELPP +VL MPALSPTMNQGNIAKWRK EGDKI
Sbjct: 202 VEEKKSKHENAGNEDKQQEMSSTINTAELPPHIVLGMPALSPTMNQGNIAKWRKKEGDKI 261

Query: 241 EVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNS 300
           EVGDVICEIETDKATLEFE LEEGYLAKI+APEGSKDVAVGQPIAITVEDP D+  VK S
Sbjct: 262 EVGDVICEIETDKATLEFESLEEGYLAKIVAPEGSKDVAVGQPIAITVEDPDDIEIVKAS 321

Query: 301 VTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLK 360
           V+SG+++K EK    +S++ V+ +K SFT+ISPSAKLLI E GLDAS+L+ASGP GTLLK
Sbjct: 322 VSSGSDIKKEKPQQQESRNEVRAEKSSFTRISPSAKLLITEFGLDASTLKASGPRGTLLK 381

Query: 361 GDVLAAIKSGKVSSRISSHTEKTSPSPL-PQTSTAVSPGSKSDLELSDSFEDFPNTQIRK 419
           GDVLAAIK+G + S  SS  +K  P P+  Q S + SP  +S L+ S+SFED PN+QIRK
Sbjct: 382 GDVLAAIKAG-IGSSSSSSKDKMPPPPVHSQASPSASP-ERSHLQQSESFEDMPNSQIRK 439

Query: 420 VIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVP 479
           VIA RLLESKQNTPHLYLSSDV+LDPLLSFRKELKEKH+ KVSVNDIVIKAVA+ALKNVP
Sbjct: 440 VIATRLLESKQNTPHLYLSSDVILDPLLSFRKELKEKHDVKVSVNDIVIKAVAMALKNVP 499

Query: 480 EANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARA 539
           EANAYW+ EKGE++L D++DISIAVATEKGLMTPIVRNADQK+IS+IS+EVKELAEKARA
Sbjct: 500 EANAYWNAEKGEVILSDSVDISIAVATEKGLMTPIVRNADQKTISSISIEVKELAEKARA 559

Query: 540 GKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPA 599
           GKL P+EFQGGTFSISNLGMFPVD FCAIINPPQ+GILAVGRGN+VVEPV+G DG E PA
Sbjct: 560 GKLKPNEFQGGTFSISNLGMFPVDHFCAIINPPQSGILAVGRGNKVVEPVVGGDGLEKPA 619

Query: 600 VVTKMNLTLSADHRVFEGKVGG 621
           VVTKMNLTLSADHRVF+GKVGG
Sbjct: 620 VVTKMNLTLSADHRVFDGKVGG 641

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571622|ref|XP_002526756.1| dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis] gi|223533883|gb|EEF35610.1| dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/625 (75%), Positives = 526/625 (84%), Gaps = 9/625 (1%)

Query: 1   MALSRLR-QPVIARTLSLFRARLSLSSFSSSTSLARISSG-KNSFVDVNGILLRPLSSTL 58
           MA SRLR Q +I+R  SL      LS+ S S +   I SG K+SFVD N   LRP S  +
Sbjct: 1   MAFSRLRHQMMISRAPSLLLKTRVLSTSSRSVTRCAICSGAKHSFVDGNDFYLRPTSIFM 60

Query: 59  APEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGD 118
              VHD  LKLK+ IGVRHFSSSE PSH V+GMPALSPTM+QGN+AKWRKKEGDK+++GD
Sbjct: 61  ITGVHDKFLKLKLGIGVRHFSSSE-PSHMVIGMPALSPTMTQGNVAKWRKKEGDKVKVGD 119

Query: 119 ILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGG 178
           +LCEIETDKAT+EFESLEEGFLAKIL PEGSKDVPVGQPIAITVE+ DDIQ++P   + G
Sbjct: 120 VLCEIETDKATLEFESLEEGFLAKILTPEGSKDVPVGQPIAITVENEDDIQNVPVD-SSG 178

Query: 179 AEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGD 238
           AE KE  S  QD K E V   SA RINTSELPP V LEMPALSPTMNQGNIAKWRK EGD
Sbjct: 179 AEIKEGKSAEQDAKGEDVGSKSA-RINTSELPPHVFLEMPALSPTMNQGNIAKWRKKEGD 237

Query: 239 KIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVK 298
           KIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA+TVEDP D+ TVK
Sbjct: 238 KIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIALTVEDPNDIETVK 297

Query: 299 NSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTL 358
            S+++G EVK EK T HDSKD  + +K SF++ISPSA+LLI E+GLDAS+L+ASGP+GTL
Sbjct: 298 TSISNGMEVKEEKFTRHDSKDETREEKPSFSRISPSARLLISEYGLDASTLKASGPFGTL 357

Query: 359 LKGDVLAAIKSGKVSSRISSHTEKTSPSPL--PQTSTAVSPGSKSDLELSDSFEDFPNTQ 416
           LK DVLAAIK+GK SS+ S   EK +PSP   P  ST V P  +S  + SDSFED PNTQ
Sbjct: 358 LKIDVLAAIKAGKGSSKKSVPKEKEAPSPQKGPYASTTVLPEPQS--QQSDSFEDIPNTQ 415

Query: 417 IRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALK 476
           IRKVIARRLLESKQ TPHLYLS+DV+LDPL+SFRKELKE H+ KVSVNDIVIKAVA+AL+
Sbjct: 416 IRKVIARRLLESKQTTPHLYLSTDVILDPLISFRKELKEHHDIKVSVNDIVIKAVAIALR 475

Query: 477 NVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEK 536
           NVPEANAYW+ +KGEIV CD++DISIAVATEKGLMTPIVRNADQKSIS+IS EVK+LAE+
Sbjct: 476 NVPEANAYWNEDKGEIVFCDSVDISIAVATEKGLMTPIVRNADQKSISSISAEVKQLAER 535

Query: 537 ARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNE 596
           ARAGKL P+EFQGGTFSISNLGM+PVD F AIINPPQAGILAVGRGN+VVEP++GSDG E
Sbjct: 536 ARAGKLTPNEFQGGTFSISNLGMYPVDHFAAIINPPQAGILAVGRGNKVVEPLLGSDGCE 595

Query: 597 TPAVVTKMNLTLSADHRVFEGKVGG 621
            PAVVTKM LTLSADHRVF+GKVGG
Sbjct: 596 KPAVVTKMTLTLSADHRVFDGKVGG 620

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100693|ref|XP_002311977.1| predicted protein [Populus trichocarpa] gi|222851797|gb|EEE89344.1| predicted protein [Populus trichocarpa]

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/577 (77%), Positives = 493/577 (85%), Gaps = 11/577 (1%)

Query: 49  ILLRPLSSTLAPEVHD-SPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWR 107
           + +R  S      VHD S LKLKMQIGVRHFSSSE PSHTVVGMPALSPTM+QGNIAKW+
Sbjct: 1   MCIRSASVFTVSGVHDDSSLKLKMQIGVRHFSSSE-PSHTVVGMPALSPTMTQGNIAKWK 59

Query: 108 KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD 167
           KKEG+KIE+GD+LCEIETDKAT+EFE LEEGFLAKILVPEGSKDVPVGQ IAITVEDADD
Sbjct: 60  KKEGEKIEVGDVLCEIETDKATLEFECLEEGFLAKILVPEGSKDVPVGQAIAITVEDADD 119

Query: 168 IQHIPATIAGGAEAKEQSSTHQDVKKEA-VQETSASRINTSELPPRVVLEMPALSPTMNQ 226
           IQ++PAT+  G++ KE+ ST QDVK E   QETS+  IN SELPP V+L MPALSPTMNQ
Sbjct: 120 IQNVPATVGSGSDVKEEKSTDQDVKSEGGAQETSS--INASELPPHVILGMPALSPTMNQ 177

Query: 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAI 286
           GNIAKWRK EGDKIEVGDVICEIETDKATLEFE LEEGYLAKILAPEGSKDVAVGQPIAI
Sbjct: 178 GNIAKWRKKEGDKIEVGDVICEIETDKATLEFETLEEGYLAKILAPEGSKDVAVGQPIAI 237

Query: 287 TVEDPGDVGTVKNSVTS--GAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGL 344
           TVED  D+  VK S +S  G +VK EK THH SK     +KG+F +ISPSAKLLI EHGL
Sbjct: 238 TVEDSNDIEAVKTSASSSSGKKVKEEKPTHHGSKAEASKEKGNFKRISPSAKLLISEHGL 297

Query: 345 DASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLE 404
           DASSL ASGPYGTLLK DVLAAIKSGK   + SS  EK +P P      +  P  +   +
Sbjct: 298 DASSLHASGPYGTLLKTDVLAAIKSGK--GKKSSAAEKGAPPPQKSPQPSAIPSLEP--K 353

Query: 405 LSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVN 464
            SDSFED PNTQIRKVIARRLLESKQ TPHLYLS+DV+LDPLLSFRKELKE+H+ KVSVN
Sbjct: 354 QSDSFEDLPNTQIRKVIARRLLESKQTTPHLYLSTDVILDPLLSFRKELKEQHDVKVSVN 413

Query: 465 DIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSIS 524
           DIVIKAVA+AL+NVP+ANAYW+VEKGEI+LCD++DISIAVATEKGLMTPIVRNADQKSIS
Sbjct: 414 DIVIKAVAIALRNVPQANAYWNVEKGEIILCDSVDISIAVATEKGLMTPIVRNADQKSIS 473

Query: 525 AISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQ 584
           AIS EVK+LAEKAR GKL P+EFQGGTFSISNLGM+PVDQF AIINPPQAGILAVGRGN+
Sbjct: 474 AISSEVKQLAEKARVGKLTPNEFQGGTFSISNLGMYPVDQFVAIINPPQAGILAVGRGNK 533

Query: 585 VVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621
           VVEP++GSDG E PAV+ KMNLTLSADHRVF+G+V G
Sbjct: 534 VVEPLLGSDGIERPAVINKMNLTLSADHRVFDGQVSG 570

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576335|ref|XP_003556288.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Glycine max]

 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/624 (68%), Positives = 507/624 (81%), Gaps = 17/624 (2%)

Query: 1   MALSRLRQPVIARTLSLFRA---RLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSST 57
           MALSRLR P+ +R+L +  +    LS +S+SS  +L           D + I+ RP S +
Sbjct: 1   MALSRLRHPLFSRSLLILSSPARSLSRTSYSSIFTLGG---------DHHNII-RPASCS 50

Query: 58  LAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIG 117
               +HD  LK K    V++FSSS+  SH V+GMPALSPTM+QGNIAKWRKKEG+KIE+G
Sbjct: 51  RLTGIHDRSLKSKW-TDVKYFSSSD-SSHEVLGMPALSPTMTQGNIAKWRKKEGEKIEVG 108

Query: 118 DILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAG 177
           D+LCEIETDKAT+EFESLEEGFLAKILVPEGSKDVPVGQPIAITVED +DIQ++PA+  G
Sbjct: 109 DVLCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDENDIQNVPASAGG 168

Query: 178 GAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEG 237
               +E+  T +DV  E   E++++ IN SELPP V+LEMPALSPTMNQGNIAKWRK EG
Sbjct: 169 ETRVEEKKPTREDVTDERKSESTSAIINASELPPHVLLEMPALSPTMNQGNIAKWRKQEG 228

Query: 238 DKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTV 297
           DKIEVGD++CEIETDKATLEFE LEEGYLAKILAPEGSK+VAVG PIAITVED  D+  +
Sbjct: 229 DKIEVGDILCEIETDKATLEFETLEEGYLAKILAPEGSKEVAVGHPIAITVEDASDIEAI 288

Query: 298 KNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGT 357
            NSV S +    +K    D+K   K QK +  +ISP+AKLLI E+GLDAS+L A+GPYGT
Sbjct: 289 MNSV-SRSSTNQQKAPQRDTKSEAKAQKNNIIRISPAAKLLITEYGLDASTLNATGPYGT 347

Query: 358 LLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQI 417
           LLKGDVL+AIKSGK+S + +S  EK S S       A S  SKSDL+LSD++EDFPN+QI
Sbjct: 348 LLKGDVLSAIKSGKLSPKPASSKEKVS-SFQSHQQVAASQESKSDLKLSDAYEDFPNSQI 406

Query: 418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKN 477
           RKVIA+RLL+SKQNTPHLYLSSDVVLDPLLS RK+LKE+++ KVSVNDI++K VA AL+N
Sbjct: 407 RKVIAKRLLDSKQNTPHLYLSSDVVLDPLLSLRKDLKEQYDVKVSVNDIIVKVVAAALRN 466

Query: 478 VPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKA 537
           VPEANAYW+VE GE+VL D+IDI IAVATEKGLMTPI++NADQK+ISAIS EVKELA KA
Sbjct: 467 VPEANAYWNVETGEVVLNDSIDICIAVATEKGLMTPIIKNADQKTISAISSEVKELAAKA 526

Query: 538 RAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNET 597
           RAGKL PHEFQGGTFSISNLGMFPVD+FCAIINPPQA ILAVGRGN+VVEPVIG+DG E 
Sbjct: 527 RAGKLKPHEFQGGTFSISNLGMFPVDKFCAIINPPQACILAVGRGNKVVEPVIGTDGIEK 586

Query: 598 PAVVTKMNLTLSADHRVFEGKVGG 621
           P++ TK++LTLSADHRVF+GKVGG
Sbjct: 587 PSIATKLSLTLSADHRVFDGKVGG 610

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441822|ref|XP_004138681.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Cucumis sativus]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/628 (69%), Positives = 495/628 (78%), Gaps = 15/628 (2%)

Query: 1   MALSRLRQPVIARTLSLFRARLSL---SSFSSSTSLARISSGK-NSFVDVNGILLRPLSS 56
           M+L RLR PVI R  SL  ARL     SS  SS  ++R S+     F   +G L RP+  
Sbjct: 1   MSLHRLRDPVIVRARSLLHARLGAFHSSSPVSSRYISRYSTWNVQRFSVGDGSLFRPVPF 60

Query: 57  TLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEI 116
           +         L L+  +G+R FSS++  SH V+ MPALSPTM+QGNIAKWRKKEGDK+ +
Sbjct: 61  SCFTGACGRALHLEQSVGIRFFSSTD-SSHAVLEMPALSPTMNQGNIAKWRKKEGDKVTV 119

Query: 117 GDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPAT-I 175
           GD+LCEIETDKAT+EFESLEEG+LAKILVPEGSKDVPVGQPIAITVED DDI  + A  +
Sbjct: 120 GDVLCEIETDKATLEFESLEEGYLAKILVPEGSKDVPVGQPIAITVEDPDDINRVLANDV 179

Query: 176 AGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKN 235
           +G  + K++       K EA  + S+  IN+S+LPP +VLEMPALSPTMNQGNIA WRK 
Sbjct: 180 SGATDVKQE-------KSEASAQASSVEINSSKLPPHIVLEMPALSPTMNQGNIATWRKK 232

Query: 236 EGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVG 295
           EGDKIEVGDVICEIETDKATLEFE LEEGYLAKILAPEGSKDVAVG+PIAITVED  D+ 
Sbjct: 233 EGDKIEVGDVICEIETDKATLEFESLEEGYLAKILAPEGSKDVAVGKPIAITVEDLADIE 292

Query: 296 TVKNSVTSGAEVKGEKETHHDSKDVVKVQKG--SFTKISPSAKLLILEHGLDASSLQASG 353
           +VKN+V+S + +K +K      K+ V+  KG  +  +ISP+AKLLI EHGLD SSL+ASG
Sbjct: 293 SVKNAVSSSSSIKEDKPADSTVKNGVETLKGGGAVARISPAAKLLIAEHGLDVSSLKASG 352

Query: 354 PYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFP 413
            +GTLLKGDVLAAIKSGK  S +S   EK SP    Q S+ V   +K   + SDSFED P
Sbjct: 353 SHGTLLKGDVLAAIKSGKGLSEVSLSREKRSPEVHAQASSTVLSETKLSTKQSDSFEDLP 412

Query: 414 NTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAV 473
           N+QIRKVIA+RLLESKQNTPHLYLS+DVVLDPLLS RK+LKEKH+ KVSVNDIVIKAVAV
Sbjct: 413 NSQIRKVIAKRLLESKQNTPHLYLSTDVVLDPLLSLRKDLKEKHDVKVSVNDIVIKAVAV 472

Query: 474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKEL 533
           AL+NV  ANAYWD  KGE+V CD+IDISIAVATEKGLMTPIVRNAD K+ISAIS EVKEL
Sbjct: 473 ALRNVCGANAYWDDVKGEVVFCDSIDISIAVATEKGLMTPIVRNADLKTISAISSEVKEL 532

Query: 534 AEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD 593
           AEKARAGKL P EFQGGTFSISNLGMFPVD FCAIINPPQAGILAVGRGN+VVEP+IG D
Sbjct: 533 AEKARAGKLKPDEFQGGTFSISNLGMFPVDNFCAIINPPQAGILAVGRGNKVVEPIIGDD 592

Query: 594 GNETPAVVTKMNLTLSADHRVFEGKVGG 621
           G E P VV KMNLTLSADHRVF+GKVGG
Sbjct: 593 GIERPVVVNKMNLTLSADHRVFDGKVGG 620

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493259|ref|XP_004159237.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Cucumis sativus]

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/628 (68%), Positives = 496/628 (78%), Gaps = 15/628 (2%)

Query: 1   MALSRLRQPVIARTLSLFRARLSL---SSFSSSTSLARISSGK-NSFVDVNGILLRPLSS 56
           M+L RLR PVI R  SL  ARL     SS  SS  ++R S+     F   +G L RP+  
Sbjct: 1   MSLHRLRDPVIVRARSLLHARLGAFHSSSPISSRYISRYSTWNVQRFSVGDGSLFRPVPF 60

Query: 57  TLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEI 116
           +         L L+  +G+R FSS++  SH V+ MPALSPTM+QGNIAKWRKKEGDK+ +
Sbjct: 61  SCFTGACGRALHLEQSVGIRFFSSTD-SSHAVLEMPALSPTMNQGNIAKWRKKEGDKVTV 119

Query: 117 GDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPAT-I 175
           GD+LCEIETDKAT+EFESLEEG+LAKILVPEGSKDVPVGQPIAITVED DDI  + A  +
Sbjct: 120 GDVLCEIETDKATLEFESLEEGYLAKILVPEGSKDVPVGQPIAITVEDPDDINRVLANDV 179

Query: 176 AGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKN 235
           +G  + K++       K EA  + S+  IN+S+LPP +VLEMPALSPTMNQGNIA WRK 
Sbjct: 180 SGATDVKQE-------KSEASAQASSVEINSSKLPPHIVLEMPALSPTMNQGNIATWRKK 232

Query: 236 EGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVG 295
           EGDKIEVGDVICEIETDKATLEFE LEEGYLAKILAPEGSKDVAVG+PIAITVEDP D+ 
Sbjct: 233 EGDKIEVGDVICEIETDKATLEFESLEEGYLAKILAPEGSKDVAVGKPIAITVEDPADIE 292

Query: 296 TVKNSVTSGAEVKGEKETHHDSKDVVKVQKG--SFTKISPSAKLLILEHGLDASSLQASG 353
           +VK++V+S + +K +K      K+ V+  KG  +  +ISP+AKLLI EHGLD SSL+ASG
Sbjct: 293 SVKSAVSSSSSIKEDKPADSTVKNGVETLKGGGAVARISPAAKLLIAEHGLDVSSLKASG 352

Query: 354 PYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFP 413
            +GTLLKGDVLAAIKSGK  S +S   EK SP    Q S+ V   +K   + SDSFED P
Sbjct: 353 SHGTLLKGDVLAAIKSGKGLSEVSLSREKRSPEVHAQASSTVLSETKLSTKQSDSFEDLP 412

Query: 414 NTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAV 473
           N+QIRKVIA+RLLESKQNTPHLYLS+DV+LDPLLS RK+LKEKH+ KVSVNDIVIKAVAV
Sbjct: 413 NSQIRKVIAKRLLESKQNTPHLYLSTDVMLDPLLSLRKDLKEKHDVKVSVNDIVIKAVAV 472

Query: 474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKEL 533
           AL+NV  ANAYWD  KGE+V CD+IDISIAVATEKGLMTPIVRNAD K+ISAIS EVKEL
Sbjct: 473 ALRNVCGANAYWDDVKGEVVFCDSIDISIAVATEKGLMTPIVRNADLKTISAISSEVKEL 532

Query: 534 AEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD 593
           AEKARAGKL P EFQGGTFSISNLGMFPVD FCAIINPPQAGILAVGRGN+VVEP+IG D
Sbjct: 533 AEKARAGKLKPDEFQGGTFSISNLGMFPVDNFCAIINPPQAGILAVGRGNKVVEPIIGDD 592

Query: 594 GNETPAVVTKMNLTLSADHRVFEGKVGG 621
           G E P VV KMNLTLSADHRVF+GKVGG
Sbjct: 593 GIERPVVVNKMNLTLSADHRVFDGKVGG 620

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816492|ref|XP_002876129.1| dihydrolipoamide S-acetyltransferase 3 [Arabidopsis lyrata subsp. lyrata] gi|297321967|gb|EFH52388.1| dihydrolipoamide S-acetyltransferase 3 [Arabidopsis lyrata subsp. lyrata]

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/628 (67%), Positives = 499/628 (79%), Gaps = 15/628 (2%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSL-ARISSGKNSFVD----VNGILLRPLS 55
           M L   R+  IART SL RARL    F+ ++   +R S G     D     NG+  RP S
Sbjct: 1   MVLPLFRRAAIARTSSLLRARL----FAPASGFHSRFSDGLYHLDDKIRSSNGV--RPAS 54

Query: 56  STLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIE 115
             +   + DSP K  ++ GV++FSS+   S TV+ MPALSPTMS GN+ KW KKEGDK+E
Sbjct: 55  IDMITRMDDSPPKPILRFGVQNFSSTGPISQTVLAMPALSPTMSHGNVVKWMKKEGDKVE 114

Query: 116 IGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATI 175
           +GD+LCEIETDKATVEFES EEGFLAKILV EGSKD+PV +PIAI VE+ DDIQ++PATI
Sbjct: 115 VGDVLCEIETDKATVEFESQEEGFLAKILVTEGSKDIPVNEPIAIMVEEEDDIQNVPATI 174

Query: 176 AGGAEAKEQSSTHQDVK-KEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRK 234
            GG   KE++S  Q++K  E+ Q+  + + +TS+LPP VVLEMPALSPTMNQGNIAKW K
Sbjct: 175 EGGRVGKEETSAQQEMKPDESTQQKGSIQPDTSDLPPHVVLEMPALSPTMNQGNIAKWWK 234

Query: 235 NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV 294
            EGDKIEVGDVI EIETDKATLEFE LEEGYLAKIL PEGSKDVAVG+PIA+ VED   +
Sbjct: 235 KEGDKIEVGDVIGEIETDKATLEFESLEEGYLAKILIPEGSKDVAVGKPIALIVEDAESI 294

Query: 295 GTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGP 354
             +K+S    +EV+  KE  H   D    +K  FTKISP+AKLLIL HGL+ASS++ASGP
Sbjct: 295 EVIKSSSAGSSEVETVKEVPHSVVDKPTGRKAGFTKISPAAKLLILGHGLEASSIEASGP 354

Query: 355 YGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPN 414
           YGTLLK DV AAI SGKVS + S  T+K  PS   +T +  S  SKS +  SD++EDFPN
Sbjct: 355 YGTLLKSDVAAAIASGKVS-KTSVSTKKKQPSK--ETPSKSSSTSKSSVTQSDNYEDFPN 411

Query: 415 TQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVA 474
           +QIRK+IA+RLLESKQ TPHLYL SDVVLDPLL+FRKEL+E H  KVSVNDIVIKAVAVA
Sbjct: 412 SQIRKIIAKRLLESKQKTPHLYLQSDVVLDPLLAFRKELQENHGVKVSVNDIVIKAVAVA 471

Query: 475 LKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELA 534
           L+NV +ANAYWD EKG+IV+CD++DISIAVATEKGLMTPI++NADQKSISAIS+EVKELA
Sbjct: 472 LRNVRQANAYWDAEKGDIVMCDSVDISIAVATEKGLMTPIIKNADQKSISAISLEVKELA 531

Query: 535 EKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDG 594
           +KAR+GKLAPHEFQGGTFSISNLGM+PVD FCAIINPPQAGILAVGRGN+VVEPVIG DG
Sbjct: 532 QKARSGKLAPHEFQGGTFSISNLGMYPVDHFCAIINPPQAGILAVGRGNKVVEPVIGLDG 591

Query: 595 NETPAVVTKMNLTLSADHRVFEGKVGGT 622
            E P+VVTKMN+TLSADHR+F+G+VG +
Sbjct: 592 IEKPSVVTKMNVTLSADHRIFDGQVGAS 619

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502998|gb|AFK39565.1| unknown [Lotus japonicus]

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/621 (68%), Positives = 499/621 (80%), Gaps = 12/621 (1%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAP 60
           MALSRLR P+I+R++ L  +  + S   +S S    S G N         LRP + +   
Sbjct: 1   MALSRLRHPLISRSIRLLSSSSTRSLSRTSNSW-NFSVGGNEN-------LRPATWSGLT 52

Query: 61  EVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDIL 120
            V D  LK K  I V++FSSS+  SH+V+GMPALSPTM+QGNIAKW+KKEG+KIE+GD+L
Sbjct: 53  GVCDRCLKSKW-IDVKYFSSSDS-SHSVLGMPALSPTMTQGNIAKWKKKEGEKIEVGDVL 110

Query: 121 CEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAE 180
           CEIETDKATVEFESLEEG+LAKIL PEGSKDVPVGQPIAITVED  DIQ++PA+  G A 
Sbjct: 111 CEIETDKATVEFESLEEGYLAKILTPEGSKDVPVGQPIAITVEDEGDIQNLPASAGGEAG 170

Query: 181 AKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKI 240
            +E+ STHQDV  E   E++++ IN SELPP V+LEMPALSPTMNQGNI KW K EGDKI
Sbjct: 171 VEEKKSTHQDVSDEKKPESTSTTINASELPPHVLLEMPALSPTMNQGNIVKWMKKEGDKI 230

Query: 241 EVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNS 300
           EVGD++CEIETDKATLEFE LEEGYLAKILAPEGSK+VAVG PIAITVED  D+  +KNS
Sbjct: 231 EVGDILCEIETDKATLEFETLEEGYLAKILAPEGSKEVAVGMPIAITVEDASDIEAIKNS 290

Query: 301 VTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLK 360
           + S +  + EK T H +K+ VK  K   T+ISP+AKLLI E+GLDAS+L A+GP+GTLLK
Sbjct: 291 IGSSSASQQEKATQHATKNDVKAHKNKTTRISPAAKLLITEYGLDASTLNATGPHGTLLK 350

Query: 361 GDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKV 420
           GDVL+AIKSGK+S + +S     S S   Q   A S  SKSDL  SD++ED PN+QIRKV
Sbjct: 351 GDVLSAIKSGKLSPKPASSKAHASSSQRHQ--AAASQESKSDLTQSDAYEDLPNSQIRKV 408

Query: 421 IARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPE 480
           IA+RLLESKQNTPHLYLSSDV+LDPLLS RK+LKE+++ KVSVNDI+IK VA AL+NVPE
Sbjct: 409 IAKRLLESKQNTPHLYLSSDVILDPLLSLRKDLKEQYDVKVSVNDIIIKVVAAALRNVPE 468

Query: 481 ANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG 540
           ANAYWD EKGEI LCD++DI IAVATEKGLMTPI++NAD K+ISAIS EVKELA KAR G
Sbjct: 469 ANAYWDAEKGEINLCDSVDICIAVATEKGLMTPIIKNADHKTISAISSEVKELAAKAREG 528

Query: 541 KLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAV 600
           KL PHEF GGTFSISNLGMFPVD+FCAIINPPQA ILAVG+GN+VVEPVIG+DG E P+V
Sbjct: 529 KLRPHEFHGGTFSISNLGMFPVDKFCAIINPPQACILAVGKGNKVVEPVIGADGIEKPSV 588

Query: 601 VTKMNLTLSADHRVFEGKVGG 621
             K++LTLSADHRVF+GKV G
Sbjct: 589 ANKLSLTLSADHRVFDGKVAG 609

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5881965|gb|AAD55140.1|AF066080_1 dihydrolipoamide S-acetyltransferase [Arabidopsis thaliana]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/629 (66%), Positives = 496/629 (78%), Gaps = 16/629 (2%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSL-ARISSGKNSFVD----VNGILLRPLS 55
           M L   R+  IART SL RARL    F+ ++   +R S+G     D     NG+  R  S
Sbjct: 1   MVLPLFRRAAIARTSSLLRARL----FAPASEFHSRFSNGLYHLDDKISSSNGV--RSAS 54

Query: 56  STLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIE 115
             L   + DS  K  ++ GV++FSS+   S TV+ MPALSPTMS GN+ KW KKEGDK+E
Sbjct: 55  IDLITRMDDSSPKPILRFGVQNFSSTGPISQTVLAMPALSPTMSHGNVVKWMKKEGDKVE 114

Query: 116 IGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATI 175
           +GD+LCEIETDKATVEFES EEGFLAKILV EGSKD+PV +PIAI VE+ DDI+++PATI
Sbjct: 115 VGDVLCEIETDKATVEFESQEEGFLAKILVTEGSKDIPVNEPIAIMVEEEDDIKNVPATI 174

Query: 176 AGGAEAKEQSSTHQDVK-KEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRK 234
            GG + KE++S HQ +K  E+ Q+ S+ + + S+LPP VVLEMPALSPTMNQGNIAKW K
Sbjct: 175 EGGRDGKEETSAHQVMKPDESTQQKSSIQPDASDLPPHVVLEMPALSPTMNQGNIAKWWK 234

Query: 235 NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV 294
            EGDKIEVGDVI EIETDKATLEFE LEEGYLAKIL PEGSKDVAVG+PIA+ VED   +
Sbjct: 235 KEGDKIEVGDVIGEIETDKATLEFESLEEGYLAKILIPEGSKDVAVGKPIALIVEDAESI 294

Query: 295 GTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGP 354
             +K+S    +EV   KE      D    +K  FTKISP+AKLLILEHGL+ASS++ASGP
Sbjct: 295 EAIKSSSAGSSEVDTVKEVPDSVVDKPTERKAGFTKISPAAKLLILEHGLEASSIEASGP 354

Query: 355 YGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDS-FEDFP 413
           YGTLLK DV+AAI SGK +S+ S+ T+K  PS   +T +  S  SK  +  SD+ +EDFP
Sbjct: 355 YGTLLKSDVVAAIASGK-ASKSSAFTKKKQPSK--ETPSKSSSTSKPSVTQSDNNYEDFP 411

Query: 414 NTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAV 473
           N+QIRK+IA+RLLESKQ  PHLYL SDVVLDPLL+FRKEL+E H  KVSVNDIVIKAVAV
Sbjct: 412 NSQIRKIIAKRLLESKQKIPHLYLQSDVVLDPLLAFRKELQENHGVKVSVNDIVIKAVAV 471

Query: 474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKEL 533
           AL+NV +ANA+WD EKG+IV+CD++DISIAVATEKGLMTPI++NADQKSISAIS+EVKEL
Sbjct: 472 ALRNVRQANAFWDAEKGDIVMCDSVDISIAVATEKGLMTPIIKNADQKSISAISLEVKEL 531

Query: 534 AEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD 593
           A+KAR+GKLAPHEFQGGTFSISNLGM+PVD FCAIINPPQAGILAVGRGN+ VEPVIG D
Sbjct: 532 AQKARSGKLAPHEFQGGTFSISNLGMYPVDNFCAIINPPQAGILAVGRGNKEVEPVIGLD 591

Query: 594 GNETPAVVTKMNLTLSADHRVFEGKVGGT 622
           G E P VVTKMN+TLSADHR+F+G+VG +
Sbjct: 592 GIEKPCVVTKMNVTLSADHRIFDGQVGAS 620

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	622
UNIPROTKB|F1N690	647	DLAT "Dihydrolipoyllysine-resi	0.340	0.327	0.474	2.5e-100
MGI|MGI:2385311	642	Dlat "dihydrolipoamide S-acety	0.853	0.827	0.410	8.2e-99
RGD|619859	632	Dlat "dihydrolipoamide S-acety	0.852	0.838	0.409	8.2e-99
UNIPROTKB|E1C6N5	632	DLAT "Uncharacterized protein"	0.855	0.841	0.417	5.2e-97
ZFIN|ZDB-GENE-030131-2921	652	dlat "dihydrolipoamide S-acety	0.839	0.800	0.408	2.9e-96
UNIPROTKB|P10515	647	DLAT "Dihydrolipoyllysine-resi	0.874	0.840	0.413	4.7e-96
UNIPROTKB|F1SMB2	647	DLAT "Dihydrolipoyllysine-resi	0.853	0.820	0.427	4.2e-95
UNIPROTKB|E2RQS9	647	DLAT "Uncharacterized protein"	0.869	0.836	0.419	5.3e-95
DICTYBASE|DDB_G0277847	635	pdhC "dihydrolipoyllysine-resi	0.819	0.803	0.396	4.8e-94
UNIPROTKB|E9PEJ4	542	DLAT "Dihydrolipoyllysine-resi	0.432	0.496	0.419	1.4e-78

UNIPROTKB|F1N690 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex" [Bos taurus (taxid:9913)]

 Score = 509 (184.2 bits), Expect = 2.5e-100, Sum P(2) = 2.5e-100
 Identities = 101/213 (47%), Positives = 139/213 (65%)

Query:    83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
             LP H  V +P+LSPTM  G IA+W KKEG+KI  G+++ E+ETDKATV FES+EE ++AK
Sbjct:    88 LPPHQKVPLPSLSPTMQAGTIARWEKKEGEKINEGELIAEVETDKATVGFESVEECYMAK 147

Query:   143 ILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQSSTHQDVKKEAVQETSA 201
             ILV EG++DVPVG  I ITV+  +D++     T+   A     ++        A   T +
Sbjct:   148 ILVAEGTRDVPVGAIICITVDKPEDVEAFKNYTLDSSAAPAPPAAPAPTPAAPAPSPTPS 207

Query:   202 SRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECL 261
             ++   S  P  + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  
Sbjct:   208 AQAPGSSYPTHMQVLLPALSPTMTMGTVQRWEKKVGEKLNEGDLLAEIETDKATIGFEVQ 267

Query:   262 EEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV 294
             EEGYLAKIL PEG++DV +G P+ I VE   D+
Sbjct:   268 EEGYLAKILIPEGTRDVPLGTPLCIIVEKEADI 300

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

MGI|MGI:2385311 Dlat "dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)" [Mus musculus (taxid:10090)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 235/572 (41%), Positives = 319/572 (55%)

Query:    69 LKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKA 128
             L+  +G     S  LP H  V +P+LSPTM  G IA+W KKEG+KI  GD++ E+ETDKA
Sbjct:    73 LRQLLGSPSRRSYSLPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKA 132

Query:   129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQSST 187
             TV FESLEE ++AKILVPEG++DVPVG  I ITVE   DI+     T+   A A  Q++ 
Sbjct:   133 TVGFESLEECYMAKILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDLAAAAAPQAAP 192

Query:   188 HQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVIC 247
                    A     ++    S  P  + + +PALSPTM  G + +W K  G+K+  GD++ 
Sbjct:   193 AAAPAPAAAPAAPSASAPGSSYPTHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLA 252

Query:   248 EIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN----SVTS 303
             EIETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +     VTS
Sbjct:   253 EIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGAPLCIIVEKQEDIAAFADYRPTEVTS 312

Query:   304 ------------GAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQA 351
                          A V    +    +             +SP AK L  E G+D + ++ 
Sbjct:   313 LKPQAAPPAPPPVAAVPPTPQPVAPTPSAAPAGPKGRVFVSPLAKKLAAEKGIDLTQVKG 372

Query:   352 SGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFED 411
             +GP G ++K D+ + + S            K +P+     +    PG +     +  F D
Sbjct:   373 TGPEGRIIKKDIDSFVPS------------KAAPAA---AAAMAPPGPRVAPAPAGVFTD 417

Query:   412 FPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIK 469
              P + IR+VIA+RL++SKQ  PH               RKEL +  +   K+SVND +IK
Sbjct:   418 IPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKELNKMLEGKGKISVNDFIIK 477

Query:   470 AVAVALKNVPEANAYWDVEKGEIVLCD-AIDISIAVATEKGLMTPIVRNADQKSISAISM 528
             A A+A   VPEAN+ W      ++  +  +D+S+AV+T  GL+TPIV NA  K +  I+ 
Sbjct:   478 ASALACLKVPEANSSW---MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLETIAS 534

Query:   529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP 588
             +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G     + P
Sbjct:   535 DVVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIP 594

Query:   589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVG 620
                  G +  +V   M++TLS DHRV +G VG
Sbjct:   595 ADNEKGFDVASV---MSVTLSCDHRVVDGAVG 623

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISO;IC

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=TAS

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISO;TAS

RGD|619859 Dlat "dihydrolipoamide S-acetyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 234/571 (40%), Positives = 318/571 (55%)

Query:    69 LKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKA 128
             L+  +G     S  LP H  V +P+LSPTM  G IA+W KKEG+KI  GD++ E+ETDKA
Sbjct:    65 LQQLLGSPSRRSYSLPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKA 124

Query:   129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTH 188
             TV FESLEE ++AKILVPEG++DVPVG  I ITVE   DI+         A A  Q++  
Sbjct:   125 TVGFESLEECYMAKILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDSATAATQAAPA 184

Query:   189 QDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICE 248
                   A     ++    S  P  + + +PALSPTM  G + +W K  G+K+  GD++ E
Sbjct:   185 PAAAPAAAPAAPSASAPGSSYPVHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAE 244

Query:   249 IETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN----SVTS- 303
             IETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +     VTS 
Sbjct:   245 IETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKQEDIAAFADYRPTEVTSL 304

Query:   304 -----------GAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQAS 352
                         A V    +    +             +SP AK L  E G+D + ++ +
Sbjct:   305 KPQAPPPVPPPVAAVPPIPQPLAPTPSAAPAGPKGRVFVSPLAKKLAAEKGIDLTQVKGT 364

Query:   353 GPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDF 412
             GP G ++K D+ + + +            K +P+     + A  PG +     +  F D 
Sbjct:   365 GPEGRIIKKDIDSFVPT------------KAAPA----AAAAAPPGPRVAPTPAGVFIDI 408

Query:   413 PNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIKA 470
             P + IR+VIA+RL++SKQ  PH               RKEL +  +   K+SVND +IKA
Sbjct:   409 PISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKELNKMLEGKGKISVNDFIIKA 468

Query:   471 VAVALKNVPEANAYWDVEKGEIVLCD-AIDISIAVATEKGLMTPIVRNADQKSISAISME 529
              A+A   VPEAN+ W      ++  +  +D+S+AV+T  GL+TPIV NA  K +  I+ +
Sbjct:   469 SALACLKVPEANSSW---MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLETIASD 525

Query:   530 VKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPV 589
             V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G     + P 
Sbjct:   526 VVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIPA 585

Query:   590 IGSDGNETPAVVTKMNLTLSADHRVFEGKVG 620
                 G +  +V   M++TLS DHRV +G VG
Sbjct:   586 DNEKGFDVASV---MSVTLSCDHRVVDGAVG 613

GO:0000166 "nucleotide binding" evidence=TAS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030431 "sleep" evidence=IEP

GO:0045254 "pyruvate dehydrogenase complex" evidence=IDA;TAS

UNIPROTKB|E1C6N5 DLAT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 231/553 (41%), Positives = 311/553 (56%)

Query:    83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
             LP+H  V +PALSPTM  G IA+W KKEGDKI  GD++ E+ETDKATV FESLEE +LAK
Sbjct:    67 LPAHQKVALPALSPTMQMGTIARWEKKEGDKIGEGDLIAEVETDKATVGFESLEECYLAK 126

Query:   143 ILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQSSTHQD-VKKEAVQETS 200
             ILVPEG++DVP+G  I ITVE  + +      T+   A A   +S         +     
Sbjct:   127 ILVPEGTRDVPIGAIICITVEKPEHVDAFKNYTLDSAASAPLAASVPPPPAAAPSPPPPP 186

Query:   201 ASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFEC 260
             + +   S  PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE 
Sbjct:   187 SPQAPGSSYPPHMQVALPALSPTMTMGTVQRWEKKVGEKLNEGDLLAEIETDKATIGFEV 246

Query:   261 LEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-SVTSGAEVKGEKETHHDSKD 319
              EEGYLAKIL PEG++DV +G  + I VE   D+    +   T+  ++K +      S  
Sbjct:   247 QEEGYLAKILVPEGTRDVPLGTTLCIIVEKESDIPAFADYQETAVTDMKAQVPPPPPSPP 306

Query:   320 VVKVQKGSFTKISPSAKLL--ILEHGLDASSLQAS-GPYGTLL---KGDVLAAIKSGKVS 373
             VV     +     P+A     +   G      +    P    L   KG  LA +K     
Sbjct:   307 VVATPAAAALPPQPAAPPTPAVPTAGPPPRKGRILVSPLAKKLAAEKGIDLAQVKGTGPD 366

Query:   374 SRISSHTEKT--SPSPLPQTSTAVSPGSKSDLELS-DSFEDFPNTQIRKVIARRLLESKQ 430
              RI+    +T   P   P  +    P + +       +F D P + IR+VIA+RL++SKQ
Sbjct:   367 GRITKKDVETFVPPKVAPAPAVEAVPAAAAVAAAPVGTFTDIPISNIRRVIAQRLMQSKQ 426

Query:   431 NTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVE 488
               PH               RKEL +    N K+SVND +IKA A+A   VPEAN+ W   
Sbjct:   427 TIPHYYLSVDVNMGEVLVLRKELNQVVSDNVKLSVNDFIIKASALACLKVPEANSSW--- 483

Query:   489 KGEIVLCD-AIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEF 547
                ++  +  +D+S+AV+T  GL+TPIV NA  K +++IS +V  LA KAR GKL PHEF
Sbjct:   484 MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLASISKDVVSLAAKAREGKLQPHEF 543

Query:   548 QGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT 607
             QGGTF+ISNLGM+ +  F AIINPPQA ILAVG   + + P     G +   V + M++T
Sbjct:   544 QGGTFTISNLGMYGIKNFSAIINPPQACILAVGSSEKRLVPADNEKGFD---VASMMSVT 600

Query:   608 LSADHRVFEGKVG 620
             LS DHRV +G VG
Sbjct:   601 LSCDHRVVDGAVG 613

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-030131-2921 dlat "dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)" [Danio rerio (taxid:7955)]

 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 229/561 (40%), Positives = 312/561 (55%)

Query:    83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
             LP H  V +PALSPTM  G IA+W KKEGDKI  GD++ E+ETDKATV FE LEE +LAK
Sbjct:    89 LPPHQKVELPALSPTMQMGTIARWEKKEGDKINEGDLIAEVETDKATVGFEMLEECYLAK 148

Query:   143 ILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSAS 202
             ILV EG++DVP+G  I ITV+  + I            +   ++             +A 
Sbjct:   149 ILVAEGTRDVPIGAVICITVDKPELISSFKDFTLDKITSSAPAAAAPPPPATPTSAPAAP 208

Query:   203 RINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLE 262
             ++  S  PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  E
Sbjct:   209 QVPGSSYPPHMKVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQE 268

Query:   263 EGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAE---------VKGEKET 313
             EGYLAKI+  EG++DV +G P+ I VE   D+    + V +G           V      
Sbjct:   269 EGYLAKIMISEGTRDVPLGTPLCIIVEKESDISAFADYVETGVAASPPPAPTLVATPPPA 328

Query:   314 HHDSKDV----------VKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363
                +  +             +KG     SP AK L  E G+D + +  +GP G + K D+
Sbjct:   329 AAPAAPIPAPAAAPAAPAAARKGRVFA-SPLAKKLAAEKGVDITQVTGTGPDGRVTKKDI 387

Query:   364 LAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIAR 423
              + +   K++   ++     +PSP    + A  P        + +F D P + IRKVIA+
Sbjct:   388 DSFVPP-KLTPAAAAAPSAPTPSPPAAPAYAAVP--------TGTFTDVPISNIRKVIAQ 438

Query:   424 RLLESKQNTPHXXXXXXXXXXXXXXFRKELKEK---HNTKVSVNDIVIKAVAVALKNVPE 480
             RL++SKQ  PH               RKEL  +    N K+SVND +IKA A+A   VPE
Sbjct:   439 RLMQSKQTIPHYYLSIDVNMDQVLELRKELNAEVKAENIKLSVNDFIIKASALACLKVPE 498

Query:   481 ANAYWDVEKGEIVLCD-AIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARA 539
             AN+ W      ++  +  +D+S+AV+T  GL+TPIV NA  K ++ IS +V  LA KAR 
Sbjct:   499 ANSSW---MDTVIRQNHVVDVSVAVSTPVGLITPIVFNAHIKGLANISKDVSALAAKARD 555

Query:   540 GKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPA 599
             GKL PHEFQGGTF+ISNLGM+ +  F AIINPPQA ILAVG   + + P     G +   
Sbjct:   556 GKLQPHEFQGGTFTISNLGMYGIKHFSAIINPPQACILAVGGSEKRLLPADNEKGFD--- 612

Query:   600 VVTKMNLTLSADHRVFEGKVG 620
             V   M++TLS DHRV +G VG
Sbjct:   613 VANMMSVTLSCDHRVVDGAVG 633

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA;IMP

GO:0004738 "pyruvate dehydrogenase activity" evidence=IMP

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IMP

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0009583 "detection of light stimulus" evidence=IMP

UNIPROTKB|P10515 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 233/564 (41%), Positives = 314/564 (55%)

Query:    67 LKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETD 126
             L+L    G R++S   LP H  V +P+LSPTM  G IA+W KKEGDKI  GD++ E+ETD
Sbjct:    75 LQLLGSPGRRYYS---LPPHQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETD 131

Query:   127 KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQS 185
             KATV FESLEE ++AKILV EG++DVP+G  I ITV   +DI+     T+   A    Q+
Sbjct:   132 KATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAAPTPQA 191

Query:   186 STHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV 245
             +        A   T +++   S  PP + + +PALSPTM  G + +W K  G+K+  GD+
Sbjct:   192 APAPTPAATASPPTPSAQAPGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDL 251

Query:   246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-SVTSG 304
             + EIETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +   T  
Sbjct:   252 LAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEV 311

Query:   305 AEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLL---KG 361
              ++K +                     +PSA       G       +  P    L   KG
Sbjct:   312 TDLKPQVPPPTPPPVAAVPPTPQPLAPTPSAPCPATPAGPKGRVFVS--PLAKKLAVEKG 369

Query:   362 DVLAAIKSGKVSSRISSHT-EKTSPSPLPQTSTAVSPGSKSDLELSDS--FEDFPNTQIR 418
               L  +K      RI+    +   PS +     AV P +   +    +  F D P + IR
Sbjct:   370 IDLTQVKGTGPDGRITKKDIDSFVPSKVAPAPAAVVPPTGPGMAPVPTGVFTDIPISNIR 429

Query:   419 KVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIKAVAVALK 476
             +VIA+RL++SKQ  PH               RKEL +  +  +K+SVND +IKA A+A  
Sbjct:   430 RVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACL 489

Query:   477 NVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEK 536
              VPEAN+ W ++   I     +D+S+AV+T  GL+TPIV NA  K +  I+ +V  LA K
Sbjct:   490 KVPEANSSW-MDT-VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATK 547

Query:   537 ARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNE 596
             AR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G     + P     G +
Sbjct:   548 AREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFD 607

Query:   597 TPAVVTKMNLTLSADHRVFEGKVG 620
                V + M++TLS DHRV +G VG
Sbjct:   608 ---VASMMSVTLSCDHRVVDGAVG 628

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=NAS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=NAS

GO:0006085 "acetyl-CoA biosynthetic process" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0010510 "regulation of acetyl-CoA biosynthetic process from pyruvate" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1SMB2 DLAT "Dihydrolipoyllysine-residue acetyltransferase" [Sus scrofa (taxid:9823)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 234/548 (42%), Positives = 306/548 (55%)

Query:    83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
             LP H  V +P+LSPTM  G IA+W KKEGDKI  G+++ E+ETDKATV FESLEE ++AK
Sbjct:    88 LPPHQKVPLPSLSPTMQAGTIARWEKKEGDKINEGELIAEVETDKATVGFESLEECYMAK 147

Query:   143 ILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQSSTHQDVKKEAVQETSA 201
             ILV EG++DVPVG  I ITVE  +DI+     T+   A    Q++        A   T +
Sbjct:   148 ILVAEGTRDVPVGAIICITVEKPEDIEAFKNYTLDSSAAPAPQAAPAPTPAAAAPAPTPS 207

Query:   202 SRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECL 261
             ++   S  P  + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  
Sbjct:   208 AQAPGSSYPTHMQVVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQ 267

Query:   262 EEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-SVTSGAEVKGEKETHHDSKDV 320
             EEGYLAKIL PEG++DV +G P+ I VE   D+    +   T   ++K        S   
Sbjct:   268 EEGYLAKILIPEGTRDVPLGTPLCIIVEKEADIPAFADYRPTEVTDLKPPAPPPTPSPVT 327

Query:   321 VKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLL---KGDVLAAIKSGKVSSRI- 376
                        +P+A       G     L  S P    L   KG  L  IK      RI 
Sbjct:   328 PVPPAPQPVAPTPAATRPATPAG-PKGRLFVS-PLAKKLASEKGIDLTQIKGTGPDGRII 385

Query:   377 SSHTEKTSPSPL-PQTSTAVSPGSKSDLELSDS-FEDFPNTQIRKVIARRLLESKQNTPH 434
                 +   P+   P  + AV P S     +    F D P + IR+VIA+RL++SKQ  PH
Sbjct:   386 KKDIDSFVPTKAAPTPAAAVPPPSPGVAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPH 445

Query:   435 XXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEI 492
                            RKEL +  +  +K+SVND +IKA A+A   VPEAN+ W ++   I
Sbjct:   446 YYLSVDVNMGEVLLVRKELNKMLEGRSKISVNDFIIKASALACLKVPEANSSW-LDT-VI 503

Query:   493 VLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTF 552
                  +DIS+AV+T  GL+TPIV NA  K +  I+ +V  LA KAR GKL PHEFQGGTF
Sbjct:   504 RQNHVVDISVAVSTPAGLITPIVFNAHIKGLETIANDVVSLATKAREGKLQPHEFQGGTF 563

Query:   553 SISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADH 612
             +ISNLGMF +  F AIINPPQA ILAVG     + P     G +   V + M++TLS DH
Sbjct:   564 TISNLGMFGIKNFSAIINPPQACILAVGASEDRLFPADNEKGFD---VASMMSVTLSCDH 620

Query:   613 RVFEGKVG 620
             RV +G VG
Sbjct:   621 RVVDGAVG 628

GO:0005739 "mitochondrion" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

UNIPROTKB|E2RQS9 DLAT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 238/567 (41%), Positives = 318/567 (56%)

Query:    67 LKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETD 126
             L+L    G R +S   LP H  V +P+LSPTM  G IA+W KKEG+KI  G+++ E+ETD
Sbjct:    75 LQLLGSSGRRCYS---LPPHQKVPLPSLSPTMQAGTIARWEKKEGEKINEGELIAEVETD 131

Query:   127 KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQS 185
             KATV FESLEE ++AKILV EG++DVPVG  I ITVE  +DI+     T+   A    Q+
Sbjct:   132 KATVGFESLEECYMAKILVAEGTRDVPVGAIICITVEKPEDIEAFKNYTLDSSAAPTPQA 191

Query:   186 STHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV 245
             +         +  T  ++   S  P  + + +PALSPTM  G + +W K  G+K+  GD+
Sbjct:   192 AAAPTPVAPTLPPTPPAQAPGSSYPTHMQVVLPALSPTMTMGTVQRWEKKVGEKLSEGDL 251

Query:   246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-SVTSG 304
             + EIETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +   T  
Sbjct:   252 LAEIETDKATIGFEVQEEGYLAKILIPEGTRDVPLGTPLCIIVEKEEDIPAFADYRPTEV 311

Query:   305 AEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLL---KG 361
              ++K +                     +PSA       G     L AS P    L   KG
Sbjct:   312 TDLKPQAPPSTPPPVAPVPPTPQPVTPTPSAPRPATPAG-PKGRLFAS-PLAKKLAAEKG 369

Query:   362 DVLAAIKS----GKVSSR-ISSHTE-KTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNT 415
               L  +K     G++  + + S    K +P+P      AV PG       S  F D P +
Sbjct:   370 IDLTQVKGTGPEGRIIKKDVDSFVPTKAAPAPAAAVPAAV-PGVAP--VPSGVFTDVPIS 426

Query:   416 QIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIKAVAV 473
              IR+VIA+RL++SKQ  PH               RKEL +  +  +K+SVND +IKA A+
Sbjct:   427 NIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKMLEGRSKISVNDFIIKASAL 486

Query:   474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKEL 533
             A   VPEAN+ W ++   I     +D+S+AV+T  GL+TPIV NA  K + AI+ +V  L
Sbjct:   487 ACLKVPEANSSW-LDT-VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLEAIANDVVSL 544

Query:   534 AEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD 593
             A KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G     + P     
Sbjct:   545 ATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDRLVPADNEK 604

Query:   594 GNETPAVVTKMNLTLSADHRVFEGKVG 620
             G +   V + M++TLS DHRV +G VG
Sbjct:   605 GFD---VASMMSVTLSCDHRVVDGAVG 628

GO:0005739 "mitochondrion" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0277847 pdhC "dihydrolipoyllysine-residue acetyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 219/553 (39%), Positives = 315/553 (56%)

Query:    89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLE-EGFLAKILVPE 147
             + MPALSP+M++GNI +W+KKEGD+I+ GD++ E+ETDKAT++F+  +  G+LAKIL+PE
Sbjct:    86 ITMPALSPSMTEGNIVQWKKKEGDQIKAGDVIAEVETDKATMDFQYEDGNGYLAKILIPE 145

Query:   148 GSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQ-ETSASRINT 206
             G+K + + +PIAI V   +DI+   + +     + + SST   V++EA + +  A + +T
Sbjct:   146 GTKGIEINKPIAIIVSKKEDIE---SAVKNYKPSSQASST--PVQEEAPKPKQEAPKKST 200

Query:   207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLE-EGY 265
                P   V+ MPALSP+M  G IA W K EGD+I+ GD I E+ETDKAT++F+  +  GY
Sbjct:   201 KTYPAHKVVGMPALSPSMETGGIASWTKKEGDQIKAGDAIAEVETDKATMDFQYEDGNGY 260

Query:   266 LAKILAPEGSKDVAVGQPIAITVEDPGDV----------------GTVKNSVTSGAEVKG 309
             LAKIL P G+  + + QP+ I V++  D                  + + S  S +    
Sbjct:   261 LAKILVPGGTSGIQINQPVCIIVKNKEDCDKFADYSVEEQSSSSSSSSQESTPSSSSSSS 320

Query:   310 EKETHHDSKDVVKVQK-GSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI- 367
             ++ T   S      +K G     +P+A+      G D S++  +GP   +LK DVL  + 
Sbjct:   321 QESTPSQSSSQQTTRKSGERIFATPAARFEASSKGYDLSAINGTGPNNRILKADVLEFVP 380

Query:   368 KSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLE 427
             +  +V+ +    T  T+  P   TS             S  F D P++ IRKV A RL E
Sbjct:   381 QKQEVAQQQQQQTTTTTKKPTTPTS-------------SGEFTDIPHSNIRKVTAARLTE 427

Query:   428 SKQNTPHXXXXXXXXXXXXXXFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
             SKQ  PH               R EL   +  K+SVND ++KA A AL++ P  N+ W  
Sbjct:   428 SKQTIPHYYLTMECRVDKLLKLRSELNAMNTVKISVNDFIVKASAAALRDNPVVNSTWTD 487

Query:   488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEF 547
             +   I     IDI++AV T +GL TPIVR  D K +++IS  VK+LAEKA+ GKL P EF
Sbjct:   488 QF--IRRYHNIDINVAVNTPQGLFTPIVRGVDMKGLNSISTSVKQLAEKAQNGKLHPSEF 545

Query:   548 QGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT 607
             + GTF+ISNLGM  + QF A+INPPQA ILAVG     V  V+ +  +      T +++T
Sbjct:   546 ESGTFTISNLGMLGIKQFAAVINPPQAAILAVGTTETRV--VLSNKPDSPYETATILSVT 603

Query:   608 LSADHRVFEGKVG 620
             LS DHRV +G VG
Sbjct:   604 LSCDHRVIDGAVG 616

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E9PEJ4 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 507 (183.5 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
 Identities = 123/293 (41%), Positives = 169/293 (57%)

Query:   331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQ 390
             +SP AK L +E G+D + ++ +GP G + K D+ + + S KV+   ++    T P   P 
Sbjct:   252 VSPLAKKLAVEKGIDLTQVKGTGPDGRITKKDIDSFVPS-KVAPAPAAVVPPTGPGMAP- 309

Query:   391 TSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR 450
               T V             F D P + IR+VIA+RL++SKQ  PH               R
Sbjct:   310 VPTGV-------------FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVR 356

Query:   451 KELKE--KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCD-AIDISIAVATE 507
             KEL +  +  +K+SVND +IKA A+A   VPEAN+ W      ++  +  +D+S+AV+T 
Sbjct:   357 KELNKILEGRSKISVNDFIIKASALACLKVPEANSSW---MDTVIRQNHVVDVSVAVSTP 413

Query:   508 KGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCA 567
              GL+TPIV NA  K +  I+ +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F A
Sbjct:   414 AGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSA 473

Query:   568 IINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVG 620
             IINPPQA ILA+G     + P     G +   V + M++TLS DHRV +G VG
Sbjct:   474 IINPPQACILAIGASEDKLVPADNEKGFD---VASMMSVTLSCDHRVVDGAVG 523

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WQF7	OPD21_ARATH	2, ., 3, ., 1, ., 1, 2	0.6550	0.9855	0.9623	yes	no
Q8BMF4	ODP2_MOUSE	2, ., 3, ., 1, ., 1, 2	0.4159	0.8456	0.8193	yes	no
P10515	ODP2_HUMAN	2, ., 3, ., 1, ., 1, 2	0.4206	0.8488	0.8160	yes	no
P36413	ODP2_DICDI	2, ., 3, ., 1, ., 1, 2	0.3905	0.8231	0.8062	yes	no
P08461	ODP2_RAT	2, ., 3, ., 1, ., 1, 2	0.4	0.9228	0.9082	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.976
3rd Layer	2.3.1.12	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	622
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	1e-132
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	1e-130
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	1e-117
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	1e-105
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	2e-84
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	5e-78
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	1e-77
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	5e-68
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	4e-58
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	9e-58
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	8e-52
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	3e-47
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	7e-44
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	7e-44
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	1e-43
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	4e-38
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	4e-37
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	4e-35
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	9e-32
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	2e-30
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	3e-29
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	2e-27
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	1e-25
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	9e-24
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	3e-17
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	2e-15
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	8e-15
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	2e-14
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	6e-14
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	6e-14
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	2e-13
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	2e-12
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	6e-12
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-11
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	2e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-08
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	1e-07
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	1e-05
pfam02817	39	pfam02817, E3_binding, e3 binding domain	2e-05
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	2e-05
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	4e-05
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	1e-04
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	0.001
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	0.002

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  393 bits (1011), Expect = e-132
 Identities = 196/433 (45%), Positives = 256/433 (59%), Gaps = 42/433 (9%)

Query: 214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPE 273
            + MPALSPTM  GN+AKW K EGDK+  GDVI EIETDKAT+EFE +EEGYLAKIL PE
Sbjct: 1   KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60

Query: 274 GSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKG----------------------EK 311
           G+KDV V +PIA+ VE+  DV     +    +                          +K
Sbjct: 61  GTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQK 120

Query: 312 ETHHDSKDVVKVQKGSFTKI--SPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS 369
           ++   S       K S  +I  SP AK L  E G+D S++  SGP G ++K D+ + +  
Sbjct: 121 QSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQ 180

Query: 370 GKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESK 429
                         + +     +T  +    +    + S+ED P + IRK+IA+RLLESK
Sbjct: 181 ------------SPASANQQAAATTPATYPAAAPVSTGSYEDVPLSNIRKIIAKRLLESK 228

Query: 430 QNTPHLYLSSDVVLDPLLSFRKELKEKHN--TKVSVNDIVIKAVAVALKNVPEANAYWDV 487
           Q  PH Y+S +  +D LL+ RKEL    +   K+SVND +IKA A+AL+ VPEAN+ W  
Sbjct: 229 QTIPHYYVSIECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWT- 287

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEF 547
               I     +DIS+AVAT  GL+TPIVRNAD K +S IS E+K+LA++AR  KL P EF
Sbjct: 288 -DNFIRRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEF 346

Query: 548 QGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT 607
           QGGTF+ISNLGMF +  F AIINPPQA ILAVG    V   V+ +D  +  AV + M++T
Sbjct: 347 QGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDV--AVVDNDEEKGFAVASIMSVT 404

Query: 608 LSADHRVFEGKVG 620
           LS DHRV +G VG
Sbjct: 405 LSCDHRVIDGAVG 417

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  388 bits (999), Expect = e-130
 Identities = 154/409 (37%), Positives = 218/409 (53%), Gaps = 35/409 (8%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           MP L   M +G I +W    GD ++ G  + E+ETDKAT+E      G +AK+L  EG  
Sbjct: 7   MPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV 66

Query: 277 DVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSK--------DVVKVQKGSF 328
            V VG  IA  +E+ G+      +  +      E      +                 + 
Sbjct: 67  -VPVGSVIA-VIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124

Query: 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPL 388
            K SP+ + L  E G+D S+++ SGP G + K DV AA  +                   
Sbjct: 125 AKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAA----------------- 167

Query: 389 PQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLS 448
           P  + A +  +      ++  E  P + +RK IA+R++ESK+  PH  L+ +V +  LL+
Sbjct: 168 PAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLA 227

Query: 449 FRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK 508
            RK+LK     K++V D +IKAVA+ALK  PE NA WD +   IVL   ++I IAVAT+ 
Sbjct: 228 LRKQLKAI-GVKLTVTDFLIKAVALALKKFPELNASWDDD--AIVLKKYVNIGIAVATDG 284

Query: 509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAI 568
           GL+ P++R+AD+KS+  ++ E+K+LAEKAR GKL P E QGGTF+ISNLGMF  D F  I
Sbjct: 285 GLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPI 344

Query: 569 INPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEG 617
           INPP+  IL VG    V  PV+    +    V   M L+LS DHRV +G
Sbjct: 345 INPPEVAILGVGAI--VERPVV---VDGEIVVRKVMPLSLSFDHRVIDG 388

Length = 411

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  358 bits (920), Expect = e-117
 Identities = 182/439 (41%), Positives = 256/439 (58%), Gaps = 50/439 (11%)

Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYL 266
           S+LPP   + MP+LSPTM +GNIA+W K EGDK+  G+V+CE+ETDKAT+E EC+EEGYL
Sbjct: 107 SDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYL 166

Query: 267 AKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSG-------------AEVKGEKET 313
           AKI+  +G+K++ VG+ IAITVE+  D+G  K+   S                 K E+  
Sbjct: 167 AKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVE 226

Query: 314 HHDSKDVVKVQK-------GSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAA 366
              S    K  K       G     SP A+ L  ++ +  SS++ +GP G ++K D+   
Sbjct: 227 KPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDY 286

Query: 367 IKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLL 426
           + SG            T+P      + A+             + D PNTQIRKV A RLL
Sbjct: 287 LASGG--------KGATAPPSTDSKAPAL------------DYTDIPNTQIRKVTASRLL 326

Query: 427 ESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNT----KVSVNDIVIKAVAVALKNVPEAN 482
           +SKQ  PH YL+ D  +D L++ R +L          K+SVND+VIKA A+AL+ VP+ N
Sbjct: 327 QSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCN 386

Query: 483 AYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKL 542
           + W  +   I     ++I++AV TE GL  P+V++AD+K +S I+ EVK+LA+KAR   L
Sbjct: 387 SSWTDDY--IRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSL 444

Query: 543 APHEFQGGTFSISNL-GMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVV 601
            P +++GGTF++SNL G F + QFCAIINPPQ+ ILAVG   + V P  G D        
Sbjct: 445 KPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYN---FA 501

Query: 602 TKMNLTLSADHRVFEGKVG 620
           + M++TLS DHRV +G +G
Sbjct: 502 SFMSVTLSCDHRVIDGAIG 520

Length = 539

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  323 bits (830), Expect = e-105
 Identities = 156/408 (38%), Positives = 212/408 (51%), Gaps = 32/408 (7%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           MP L  TM +G I +W K  GDK++ GDV+ E+ETDKAT+E    + G LAKIL  EG  
Sbjct: 7   MPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT 66

Query: 277 DVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAK 336
            V VG  IA   E+  D      +    A                          SP+ +
Sbjct: 67  -VPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAP-----ATAASAAAGRVLASPAVR 120

Query: 337 LLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVS 396
            L  E G+D S ++ +GP G + K DV AA+                + +P P  +   S
Sbjct: 121 RLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKA----------AAAAAPAPAAAAPAS 170

Query: 397 PGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK-- 454
              + +          P ++IRK IA R++ESKQ  PHL L ++V +  L++ RK+LK  
Sbjct: 171 AAGEEERV--------PMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEE 222

Query: 455 -EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTP 513
            EK   K++    ++KAV  ALK  PE NA  D +  EIV    ++I IAV T +GL+ P
Sbjct: 223 FEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVP 282

Query: 514 IVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQ 573
           ++R+AD+KS++ I+ E+K+LA+KAR GKL P E QGGTF+ISNLGMF    F  IINPPQ
Sbjct: 283 VIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQ 342

Query: 574 AGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621
             IL VG       PV+         V   M L+LS DHRV +G    
Sbjct: 343 VAILGVGAI--EERPVVVGGEIV---VRPMMYLSLSYDHRVIDGAEAA 385

Length = 404

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  274 bits (702), Expect = 2e-84
 Identities = 148/533 (27%), Positives = 232/533 (43%), Gaps = 35/533 (6%)

Query: 99  SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158
            +  + +W  KEGD +E    L  +ETDKAT+E  S   G + +I V  G   V VG  +
Sbjct: 14  VEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT-VSVGGLL 72

Query: 159 A-ITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEM 217
           A I    A      PA     A A   ++        A    +A+      +     +++
Sbjct: 73  AVIEAAGAAAAAAAPA-----AAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVE---VKV 124

Query: 218 PALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKD 277
           P +   + +  + +W    GD +E    +  +ETDKAT+E      G + +I    G K 
Sbjct: 125 PDIG-EITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDK- 182

Query: 278 VAVGQPIAITVEDPGDVG----------TVKNSVTSGAEVKGEKETHHDSKDVVKVQKGS 327
           V+VG  + + +E                    +  + A           +        G 
Sbjct: 183 VSVGSLLVV-IEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGK 241

Query: 328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSP 387
               SP+ + L  E G+D S ++ +G  G + K DV A +K    ++         + + 
Sbjct: 242 APHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAA----AAAAAAAA 297

Query: 388 LPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLL 447
                  + P  K D       E  P ++I+K+ A  L  S    PH+    +  +  L 
Sbjct: 298 AGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDLE 357

Query: 448 SFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAV 504
           + RK+LK   EK   K+++    IKAV  ALK  P  NA  D +  E+      +I  AV
Sbjct: 358 ALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAV 417

Query: 505 ATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564
            T  GL+ P++++ D+KS+  I+ E+ ELA+KAR GKL P + QGG F+IS+LG      
Sbjct: 418 DTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTA 477

Query: 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEG 617
           F  IIN P+  IL VG+    ++PV      +       + L+LS DHRV +G
Sbjct: 478 FTPIINAPEVAILGVGKS--QMKPV---WDGKEFVPRLMLPLSLSYDHRVIDG 525

Length = 547

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score =  253 bits (648), Expect = 5e-78
 Identities = 140/419 (33%), Positives = 204/419 (48%), Gaps = 60/419 (14%)

Query: 218 PALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKD 277
           P L  ++ +  IA W K  GD ++  +V+ EIETDK  LE      G L++ILA EG   
Sbjct: 8   PTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-T 66

Query: 278 VAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKL 337
           V VGQ +    E     G    +  + A                   + S   +SP+A+ 
Sbjct: 67  VTVGQVLGRIDE-----GAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARK 121

Query: 338 LILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSP 397
           L  E+GLDAS+++ +G  G + K DVLAA+ +              +P+     +     
Sbjct: 122 LAAENGLDASAVKGTGKGGRVTKEDVLAALAAAA--------AAPAAPAAAAPAAAPAPL 173

Query: 398 GSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE-- 455
           G++ +       E  P T++RK IA RLLE++  T  L   ++V + P++  RK+ K+  
Sbjct: 174 GARPE-------ERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAF 226

Query: 456 --KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTP 513
             KH  K+      +KAV  ALK  PE NA  D +  +IV  +  DI IAV T +GL+ P
Sbjct: 227 EKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGD--DIVYHNYYDIGIAVGTPRGLVVP 284

Query: 514 IVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMF------PVDQFCA 567
           ++R+ADQ S + I  ++ ELA+KAR GKL+  E  GGTF+I+N G+F      P      
Sbjct: 285 VLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTP------ 338

Query: 568 IINPPQAGIL--------AVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGK 618
           IINPPQ+ IL         V    Q+V             +   M L LS DHR+ +GK
Sbjct: 339 IINPPQSAILGMHKIKERPVAVNGQIV-------------IRPMMYLALSYDHRIIDGK 384

Length = 407

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score =  245 bits (627), Expect = 1e-77
 Identities = 94/200 (47%), Positives = 125/200 (62%), Gaps = 9/200 (4%)

Query: 425 LLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHN---TKVSVNDIVIKAVAVALKNVPEA 481
           + ESKQ  PH  L+ +V +  LL+ R++LKE       K++  D ++KAVA+ALK  PE 
Sbjct: 1   MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKEGLKLTFLDFLVKAVALALKEFPEL 60

Query: 482 NAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK 541
           NA WD    EIV    ++I IAVAT  GL+ P++RNAD+KS+  I+ E+K+LAE+AR GK
Sbjct: 61  NASWD-GDAEIVYKKYVNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDGK 119

Query: 542 LAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVV 601
           L P + QGGTF+ISNLGMF V  F  IINPPQ  IL VG    + +  +  DG     + 
Sbjct: 120 LKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGA---IRKRPVVVDGE--IVIR 174

Query: 602 TKMNLTLSADHRVFEGKVGG 621
             M L+LS DHRV +G    
Sbjct: 175 KVMPLSLSFDHRVIDGAEAA 194

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score =  226 bits (579), Expect = 5e-68
 Identities = 129/410 (31%), Positives = 209/410 (50%), Gaps = 38/410 (9%)

Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
           +++P L+ ++ +G +A+W K  GD ++  + I EIETDK  LE     +G L +IL  EG
Sbjct: 3   IKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEG 62

Query: 275 SKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPS 334
              V  GQ +AI +E+  D      + +   + +    +   +      +       SP+
Sbjct: 63  DT-VESGQVLAI-LEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSL----SPA 116

Query: 335 AKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTA 394
           A+ L  EHG+D S++  +G  G + K D++   ++              S       + A
Sbjct: 117 ARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEA------------PASAQQPAPAAAA 164

Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK 454
            +P + +  E     E    T++R+ IA RL E++ +T  L   ++V +  ++  RK  K
Sbjct: 165 KAPANFTRPE-----ERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYK 219

Query: 455 E----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGL 510
           E    KH  K+      +KAV  ALK  PE NA   ++  +IV  D  DIS+AV+T++GL
Sbjct: 220 EEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAE--IDGDDIVYKDYYDISVAVSTDRGL 277

Query: 511 MTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIIN 570
           + P+VRNAD+ S + I  E+ +L +KAR GKL   +  GGTF+I+N G+F       IIN
Sbjct: 278 VVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIIN 337

Query: 571 PPQAGILAVGRGNQVVEPVIGSDGNETPAVVTK--MNLTLSADHRVFEGK 618
           PPQ+ IL +   + + E  +  +G     +  +  M L LS DHR+ +GK
Sbjct: 338 PPQSAILGM---HGIKERPVAVNGQ----IEIRPMMYLALSYDHRLIDGK 380

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score =  204 bits (521), Expect = 4e-58
 Identities = 145/556 (26%), Positives = 240/556 (43%), Gaps = 33/556 (5%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           V MPAL  ++++G +  W K  GD +E  + L E+ TDK   E  S   G L +I  PE 
Sbjct: 5   VKMPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPE- 63

Query: 149 SKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSE 208
              V VG  +AI + +  +    PA  A   EA  +          A +  + +      
Sbjct: 64  DDTVEVGGVLAI-IGEPGEAGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGG 122

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAK 268
                 ++MP L  ++ +G +  W K  GD +EV + + E+ TDK   E      G L +
Sbjct: 123 SGEATEVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLE 182

Query: 269 ILAPE------GSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVV- 321
           I APE      G+    +G   A   E   +     +   S           H + D   
Sbjct: 183 IRAPEDDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPA 242

Query: 322 ----------------KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA 365
                                S   ++P  + L  + G+D S+++ +G  G + K DVLA
Sbjct: 243 PAPAPAKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLA 302

Query: 366 AIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRL 425
           A K+ + +   ++     +    P  +   +    + L  +         +IR++ A + 
Sbjct: 303 AAKAAEEARAAAAAPAAAAAPAAPAAAAKPAEPDTAKLRGTTQ----KMNRIRQITADKT 358

Query: 426 LESKQNTPHLYLSSDVVLDPLLSFRK----ELKEKHNTKVSVNDIVIKAVAVALKNVPEA 481
           +ES Q +  L    +V +  + + R     +  EK+   ++     ++AV  ALK  P  
Sbjct: 359 IESLQTSAQLTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNV 418

Query: 482 NAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK 541
           NA ++ E  E+   D   + IAV T +GL+ P++ NA   S+  ++  + +LA +AR  K
Sbjct: 419 NASYNAETKEVTYHDVEHVGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARARDNK 478

Query: 542 LAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVV 601
           L P E  GGTF+I+N+G         I+NPPQA IL  G   +    +   DG E+ A+ 
Sbjct: 479 LKPDELSGGTFTITNIGSGGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDGGESIAIR 538

Query: 602 TKMNLTLSADHRVFEG 617
           +   L L+ DHR+ +G
Sbjct: 539 SVCYLPLTYDHRLVDG 554

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  204 bits (522), Expect = 9e-58
 Identities = 130/547 (23%), Positives = 222/547 (40%), Gaps = 53/547 (9%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           V +P +     +  + +   K GD +E    L  +E DKA++E  +   G + +I V  G
Sbjct: 108 VHVPDIGSD--EVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVG 165

Query: 149 SKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSE 208
            K V  G  I +  E A +     A  A  A A+  +          V++          
Sbjct: 166 DK-VSTGSLIMV-FEVAGE-----APAAAPAAAEAAAPAAAPAAAAGVKD---------- 208

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAK 268
                 + +P +     +  + +     GDK+E    +  +E DKA++E      G + +
Sbjct: 209 ------VNVPDIGGD--EVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKE 260

Query: 269 ILAPEGSKDVAVGQPIAITVEDPG---------DVGTVKNSVTSGAEVKGEKETHHDSKD 319
           I    G K V  G  I    E  G                   + AE             
Sbjct: 261 IKVNVGDK-VKTGSLIM-RFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGK 318

Query: 320 VVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSH 379
               +  ++   +P  + L  E G++ + ++ +G  G +LK DV A +K     +  +  
Sbjct: 319 SEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAAPA 378

Query: 380 TEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSS 439
                          + P  K D       E+    +I+K+    L  +    PH+    
Sbjct: 379 AAAAGGGGPG-----LLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFD 433

Query: 440 DVVLDPLLSFRKE-----LKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVL 494
              +  L +FRK+      K K   K++    ++KAVA AL+ +P  N+    +   + L
Sbjct: 434 KADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTL 493

Query: 495 CDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSI 554
              ++I IAV T  GL+ P+ ++ ++K I  +S E+ ++++KAR GKL   + QGG F+I
Sbjct: 494 KKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTI 553

Query: 555 SNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRV 614
           S++G      F  I+N P+  IL V +    +EPV      +  A    + L+LS DHRV
Sbjct: 554 SSIGGLGTTHFTPIVNAPEVAILGVSK--SAMEPV---WNGKEFAPRLMLPLSLSYDHRV 608

Query: 615 FEGKVGG 621
            +G  G 
Sbjct: 609 IDGADGA 615

Length = 633

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score =  183 bits (467), Expect = 8e-52
 Identities = 115/419 (27%), Positives = 179/419 (42%), Gaps = 81/419 (19%)

Query: 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP 272
            V+++P +  ++++G + +W+K  GD ++  +VIC IETDK +++      G + KI A 
Sbjct: 45  KVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAE 104

Query: 273 EGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKIS 332
           EG   V VG P++    D G                   +   +     K +  + T   
Sbjct: 105 EGD-TVEVGAPLSEI--DTGGAPPAA-----APAAAAAAKA--EKTTPEKPKAAAPTPEP 154

Query: 333 PSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTS 392
           P+A                                      +         +  P P   
Sbjct: 155 PAAS--------------------------------KPTPPAAAKPPEPAPAAKPPPTPV 182

Query: 393 TAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE 452
               P               P +++R+ IA RL  S+     L   ++  +  L+  RKE
Sbjct: 183 ARADPRETR----------VPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKE 232

Query: 453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK 508
            K+    KH  K+      +KA  +ALK +P  NAY  ++  EIV  + +DIS+AVAT  
Sbjct: 233 YKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAY--IDGDEIVYRNYVDISVAVATPT 290

Query: 509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAI 568
           GL+ P++RN + KS + I  E+ +LAEKAR  KL   +  GGTF+ISN G+F       I
Sbjct: 291 GLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPI 350

Query: 569 INPPQAGIL--------AVGRGNQVV-EPVIGSDGNETPAVVTKMNLTLSADHRVFEGK 618
           INPPQ+ IL         V  GN++V  P+              M L L+ DHR+ +G+
Sbjct: 351 INPPQSAILGMHAIKKRPVVVGNEIVIRPI--------------MYLALTYDHRLIDGR 395

Length = 418

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  173 bits (441), Expect = 3e-47
 Identities = 140/537 (26%), Positives = 233/537 (43%), Gaps = 62/537 (11%)

Query: 109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIA-ITVEDADD 167
           K GDK+E G  L  +E+DKA++E  S   G + +I V  G   +PVG  IA + V     
Sbjct: 22  KPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDT-LPVGGVIATLEVGAGAQ 80

Query: 168 IQH-------IPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPAL 220
            Q           T    A A +  +     +   VQE +   I   E            
Sbjct: 81  AQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQEVTVPDIGDIE------------ 128

Query: 221 SPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEF----------------ECLEEG 264
                +  + +     GD +     +  +E+DKA++E                 + +  G
Sbjct: 129 -----KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTG 183

Query: 265 YLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQ 324
            L   L+  GS       P +          T      + A  K +      +       
Sbjct: 184 DLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAG---TQN 240

Query: 325 KGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTS 384
                  +P+ + L  E G+D S+++ +G  G +L+ DV   +K   V ++ ++ +    
Sbjct: 241 PAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVRAQAAAAS-AAG 299

Query: 385 PSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLD 444
            +P         P    D       E+   ++IRK+    L  +    PH+       + 
Sbjct: 300 GAP------GALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADIT 353

Query: 445 PLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDIS 501
            + +FRK+     EK   K++V  I++KAVA ALK  P+ NA  D+   +++L   ++I 
Sbjct: 354 EMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIG 413

Query: 502 IAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFP 561
           +AV T  GL+ P++++ D+K I+ +++E+ +LA+KAR GKL P E QG  F+IS+LG   
Sbjct: 414 VAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIG 473

Query: 562 VDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEG 617
              F  I+N P+  IL V +    +EPV   +G E  P ++  + L+LS DHRV +G
Sbjct: 474 GTAFTPIVNAPEVAILGVSKS--GMEPVW--NGKEFEPRLM--LPLSLSYDHRVIDG 524

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  164 bits (417), Expect = 7e-44
 Identities = 67/141 (47%), Positives = 95/141 (67%), Gaps = 5/141 (3%)

Query: 75  VRHFSS-SELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFE 133
            R FSS S+LP H  +GMP+LSPTM++GNIA+W KKEGDK+  G++LCE+ETDKATVE E
Sbjct: 100 ARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEME 159

Query: 134 SLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHI----PATIAGGAEAKEQSSTHQ 189
            +EEG+LAKI+  +G+K++ VG+ IAITVE+ +DI       P++ A  A  K + S   
Sbjct: 160 CMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPP 219

Query: 190 DVKKEAVQETSASRINTSELP 210
             ++E  +  S+     S+  
Sbjct: 220 PKEEEVEKPASSPEPKASKPS 240

Length = 539

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score =  160 bits (405), Expect = 7e-44
 Identities = 106/332 (31%), Positives = 165/332 (49%), Gaps = 29/332 (8%)

Query: 293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQAS 352
           ++  V  S  +G   K + ET+ D+  V         +ISP AK + LEH +    +Q +
Sbjct: 22  NLYDVSGSGANGRVHKEDVETYKDTNVV---------RISPLAKRIALEHNIAWQEIQGT 72

Query: 353 GPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDF 412
           G  G ++K DVLA +     +  I S  +      +P   T                E  
Sbjct: 73  GHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYG-----------EIERI 121

Query: 413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKEL----KEKHNTKVSVNDIVI 468
           P T +RKVIA+R++ES    P   L+ +V +  +L+ RK++     E    K +V D++ 
Sbjct: 122 PMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLS 181

Query: 469 KAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528
            AV   L   P  NA    +   I+  + +++++AV  + GLMTP+V NA++ S+S + +
Sbjct: 182 LAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVV 241

Query: 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP 588
             K++  +   GKLAP E Q  TF+ISNLGMF V  F  IIN P + IL V   + + +P
Sbjct: 242 AFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGV--SSTIEKP 299

Query: 589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVG 620
           V+    N    +   M+L L+ DHRV +G  G
Sbjct: 300 VV---VNGEIVIRPIMSLGLTIDHRVVDGMAG 328

Length = 347

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score =  161 bits (409), Expect = 1e-43
 Identities = 109/401 (27%), Positives = 188/401 (46%), Gaps = 40/401 (9%)

Query: 231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQP-IAITVE 289
           +W   EGD++E    +CE+++DKAT+E     +G +A+I    G   V VG+  + I VE
Sbjct: 17  RWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVE 75

Query: 290 DPGDVG-------TVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEH 342
           D   +        T  +++ S AE                    S    +P+ + L  ++
Sbjct: 76  DSQHLRSDSLLLPTDSSNIVSLAESDERGSNL------------SGVLSTPAVRHLAKQY 123

Query: 343 GLDASSLQASGPYGTLLKGDVLA-AIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKS 401
           G+D + +  +G  G +LK DVL  A + G V    S+     +      TS +       
Sbjct: 124 GIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVS------- 176

Query: 402 DLELSDSFED--FPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR---KELKEK 456
                 S+ED   P    ++ + + +  + +  PH +   ++ +D L+  +   +E    
Sbjct: 177 -TPTEQSYEDKTIPLRGFQRAMVKTMTAAAK-VPHFHYVEEINVDALVELKASFQENNTD 234

Query: 457 HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVR 516
              K +    +IK++++AL   P  N+ ++ E  EI L  + +I +A+ATE GL+ P ++
Sbjct: 235 PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIK 294

Query: 517 NADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGI 576
           N    S+  I+ E+  L   A   KL P +  GGT ++SN+G         ++N P+  I
Sbjct: 295 NVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAI 354

Query: 577 LAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEG 617
           +A+GR  +V   V   DGN  PA +  M +T+ ADHRV +G
Sbjct: 355 IALGRIQKVPRFV--DDGNVYPASI--MTVTIGADHRVLDG 391

Length = 416

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score =  142 bits (360), Expect = 4e-38
 Identities = 94/292 (32%), Positives = 147/292 (50%), Gaps = 15/292 (5%)

Query: 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLP 389
             +P A+ L  + G+D S L+ SG  G +L  DV   IKS K +    +  E  S S   
Sbjct: 3   LATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAP---TPAEAASVSSAQ 59

Query: 390 QTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSF 449
           Q +   +P +    +L    E      IRK IAR +  S  N  ++ L +++ +  L   
Sbjct: 60  QAAKTAAPAAAPP-KLEGKRE--KVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDL 116

Query: 450 RKELKEK----HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVA 505
           RK +K+        K++    + KA+ +ALK  P   A +D    E+V  D +++ IAV 
Sbjct: 117 RKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVD 176

Query: 506 TEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF 565
           TE GLM P+++NA + SI  I+ E+  LA+ AR  K+ P E +GG+F+I+N G       
Sbjct: 177 TEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYG 236

Query: 566 CAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEG 617
             +IN P+  I  VG    +++  I  +G      V  M+LT++ADHR  +G
Sbjct: 237 VPVINYPELAIAGVG---AIIDKAIVKNGQIVAGKV--MHLTVAADHRWIDG 283

Length = 306

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  143 bits (362), Expect = 4e-37
 Identities = 62/133 (46%), Positives = 84/133 (63%), Gaps = 9/133 (6%)

Query: 88  VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPE 147
            + MPALSPTM+ GN+AKW KKEGDK+  GD++ EIETDKAT+EFE++EEG+LAKILVPE
Sbjct: 1   KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60

Query: 148 GSKDVPVGQPIAITVEDADDIQHI-----PATIAGGAE---AKEQSSTHQDVKK-EAVQE 198
           G+KDVPV +PIA+ VE+ +D+          + A  A        ++     K   A Q+
Sbjct: 61  GTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQK 120

Query: 199 TSASRINTSELPP 211
            S    + + L  
Sbjct: 121 QSPEPSSPAPLSD 133

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  138 bits (349), Expect = 4e-35
 Identities = 51/112 (45%), Positives = 70/112 (62%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           MPALSPTM +G +AKW KKEGDK++ GD++ EIETDKAT+E E+++EG L KILVPEG++
Sbjct: 7   MPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTE 66

Query: 151 DVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSAS 202
            V V  PIA+ +E+ +      A  A  AEA   +              + +
Sbjct: 67  GVKVNTPIAVLLEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPA 118

Length = 464

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  128 bits (324), Expect = 9e-32
 Identities = 48/90 (53%), Positives = 62/90 (68%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           MPALSPTM +G +AKW K EGDK++ GDVI EIETDKAT+E E ++EG L KIL PEG++
Sbjct: 7   MPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTE 66

Query: 277 DVAVGQPIAITVEDPGDVGTVKNSVTSGAE 306
            V V  PIA+ +E+         +  + AE
Sbjct: 67  GVKVNTPIAVLLEEGESASDAGAAPAAAAE 96

Length = 464

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score =  124 bits (312), Expect = 2e-30
 Identities = 109/406 (26%), Positives = 183/406 (45%), Gaps = 65/406 (16%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +  ++  G +A + K  G++++  + I +IETDK T++      G + + L  EG  
Sbjct: 96  VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD- 154

Query: 277 DVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAK 336
                     TVE    V  +  S  + ++V   +          K+ + +  K SP A+
Sbjct: 155 ----------TVEPGTKVAIISKSEDAASQVTPSQ----------KIPETTDPKPSPPAE 194

Query: 337 LLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVS 396
                                          +  KV S   +   K   SP P   +A  
Sbjct: 195 -----------------------------DKQKPKVESAPVAEKPKAPSSPPPPKQSAKE 225

Query: 397 PGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK-- 454
           P     L   +     P T++RK +A RL +S+     L   ++V +  L+  R + K  
Sbjct: 226 P----QLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDA 281

Query: 455 --EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMT 512
             EKH  K+ +    IKA   AL++ P  NA  D +  +I+  D +DISIAV T KGL+ 
Sbjct: 282 FYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGD--DIIYRDYVDISIAVGTSKGLVV 339

Query: 513 PIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPP 572
           P++R AD+ + + I   +  LA+KA  G ++  E  GG+F++SN G++       IINPP
Sbjct: 340 PVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPP 399

Query: 573 QAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGK 618
           Q+ IL +   + +V   +   G+  P  +  M + L+ DHR+ +G+
Sbjct: 400 QSAILGM---HSIVSRPMVVGGSVVPRPM--MYVALTYDHRLIDGR 440

Length = 463

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  119 bits (302), Expect = 3e-29
 Identities = 43/129 (33%), Positives = 58/129 (44%), Gaps = 5/129 (3%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           MP L   M++G I +W  K GD ++ G  L E+ETDKATVE  S   G +AK+LV EG  
Sbjct: 7   MPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV 66

Query: 151 DVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELP 210
            VPVG  IA+  E+ +      A  A  A  +  +         A     A+    +   
Sbjct: 67  -VPVGSVIAVIEEEGEA----EAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPA 121

Query: 211 PRVVLEMPA 219
                  PA
Sbjct: 122 AAAAKASPA 130

Length = 411

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score =  105 bits (264), Expect = 2e-27
 Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query: 87  TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146
           T + MP L  +M++G I +W  KEGD +E GD+L E+ETDKATVE E+   G LAKILV 
Sbjct: 1   TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60

Query: 147 EGSKDVPVGQPIAI 160
           EG   VPVGQ IA+
Sbjct: 61  EGDT-VPVGQVIAV 73

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score = 99.8 bits (250), Expect = 1e-25
 Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP 272
             ++MP L  +M +G I +W   EGD +E GDV+ E+ETDKAT+E E    G LAKIL  
Sbjct: 1   TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60

Query: 273 EGSKDVAVGQPIAI 286
           EG   V VGQ IA+
Sbjct: 61  EGDT-VPVGQVIAV 73

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  103 bits (259), Expect = 9e-24
 Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 7/132 (5%)

Query: 85  SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL 144
               + MP L  TM++G I +W KK GDK++ GD+L E+ETDKAT+E  + + G LAKIL
Sbjct: 1   MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60

Query: 145 VPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRI 204
           V EG   VPVG  IA   E+  D        A      E ++             +A R+
Sbjct: 61  VEEGDT-VPVGAVIARIEEEGADAP------AAAEAPPEPAAAAPASAPATAASAAAGRV 113

Query: 205 NTSELPPRVVLE 216
             S    R+  E
Sbjct: 114 LASPAVRRLARE 125

Length = 404

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 83.5 bits (207), Expect = 3e-17
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 87  TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146
           T + MP    +M++G +A W  +EGD++E GD L ++ETDK T E E+   G L + +  
Sbjct: 3   TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQ 62

Query: 147 EGSKDVPVGQPIAITVEDAD 166
           EG   +PVG  +A+ V DA+
Sbjct: 63  EGE-TLPVGALLAV-VADAE 80

Length = 371

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           MP    +M +G +A W   EGD++E GD + ++ETDK T E E    G L + +A EG  
Sbjct: 7   MPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE- 65

Query: 277 DVAVGQPIAITVEDPG 292
            + VG  +A+ V D  
Sbjct: 66  TLPVGALLAV-VADAE 80

Length = 371

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 69.2 bits (170), Expect = 8e-15
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 87  TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146
           T +  P +  ++ +G  A+W  K GDK++ G +LCE+E  K  +E  +   G + +ILV 
Sbjct: 1   TEIKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59

Query: 147 EGSKDVPVGQPIAI 160
           EG   V VG P+A 
Sbjct: 60  EGDT-VEVGDPLAK 72

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           + +P L+  +  G + KW KK GDK++ GD+L EIE  KAT + E+ + G + K+LV EG
Sbjct: 2   ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEG 61

Query: 149 SKDVPVGQPI 158
           +K V    P+
Sbjct: 62  TK-VEGDTPL 70

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 73.7 bits (182), Expect = 6e-14
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 92  PALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKD 151
           P L  ++++  IA W KK GD ++  ++L EIETDK  +E  +   G L++IL  EG   
Sbjct: 8   PTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-T 66

Query: 152 VPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSAS 202
           V VGQ +    E A          A  A A   ++      + A     ++
Sbjct: 67  VTVGQVLGRIDEGAA-----AGAAAAAAAAAAAAAAAPAQAQAAAAAEQSN 112

Length = 407

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 8/152 (5%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           + +P L+ ++++G +A+W KK GD ++  + + EIETDK  +E  S  +G L +IL  EG
Sbjct: 3   IKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEG 62

Query: 149 SKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSE 208
              V  GQ +AI  E  D     PA     +  +++ +             +A+R + S 
Sbjct: 63  DT-VESGQVLAILEEGNDATAAPPA----KSGEEKEETPAASAAAA--PTAAANRPSLSP 115

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKI 240
              R+  E   +  +   G     R  + D I
Sbjct: 116 AARRLAKE-HGIDLSAVPGTGVTGRVTKEDII 146

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 73.1 bits (180), Expect = 2e-13
 Identities = 51/232 (21%), Positives = 86/232 (37%), Gaps = 27/232 (11%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           + +P +     +  + +   K GDK+E    L  +E DKA++E  S + G + +I V  G
Sbjct: 5   IKVPDIGAD--EVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVG 62

Query: 149 SKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSE 208
            K V  G  I I               A  A A+ +       KKEA    + +    + 
Sbjct: 63  DK-VETGALIMIFESADGA--------ADAAPAQAEE------KKEAAPAAAPA---AAA 104

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAK 268
                 + +P +     +  + +     GD +E    +  +E DKA++E      G + +
Sbjct: 105 A---KDVHVPDIGSD--EVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKE 159

Query: 269 ILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDV 320
           I    G K V+ G  I +  E  G+      +    A            KDV
Sbjct: 160 IKVNVGDK-VSTGSLIMV-FEVAGEAPAAAPAAAEAAAPAAAPAAAAGVKDV 209

Length = 633

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 62.2 bits (152), Expect = 2e-12
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
            P +  ++ +G  A+W    GDK++ G V+CE+E  K  +E      G + +IL  EG  
Sbjct: 5   SPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEGDT 63

Query: 277 DVAVGQPIAI 286
            V VG P+A 
Sbjct: 64  -VEVGDPLAK 72

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 60.9 bits (148), Expect = 6e-12
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 218 PALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           P L+  +  G + KW K  GDK++ GDV+ EIE  KAT + E  + G + K+L  EG+K
Sbjct: 5   PDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK 63

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 87  TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146
            V+ +P +  ++S+G + +W+KK GD ++  +++C IETDK +V+  +   G + KI   
Sbjct: 45  KVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAE 104

Query: 147 EGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINT 206
           EG   V VG P++    D       PA     A A +   T  +  K A         + 
Sbjct: 105 EGD-TVEVGAPLSEI--DTGGAP--PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASK 159

Query: 207 SELPPRVVLEMPALSPTMNQGNIA 230
              P       PA +       +A
Sbjct: 160 PTPPAAAKPPEPAPAAKPPPTPVA 183

Length = 418

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 71  MQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATV 130
           +Q  VR FSS    +   V +P +  +++ G +A + KK G++++  + + +IETDK T+
Sbjct: 77  LQRWVRPFSSESGDTVEAV-VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTI 135

Query: 131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHI-PATIAGGAEAKEQSSTHQ 189
           +  S   G + + LV EG    P G  +AI  +  D    + P+         + S   +
Sbjct: 136 DIASPASGVIQEFLVKEGDTVEP-GTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAE 194

Query: 190 DVKKEAVQETSAS---RINTSELPPRVVLEMPALSP 222
           D +K  V+    +   +  +S  PP+   + P L P
Sbjct: 195 DKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQLPP 230

Length = 463

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.8 bits (138), Expect = 2e-08
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 8/170 (4%)

Query: 460 KVSVNDIVIKAVAVALKNVPEANAYWDVEKGE--IVLCDAIDISIAVATEK-----GLMT 512
           KVS   ++  A+  ALK  P  N ++    G+  +V    +++ +A+   K      L+ 
Sbjct: 169 KVSFTHLIGYALVQALKAFPNMNRHYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVV 228

Query: 513 PIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPP 572
           P ++ A+    +      +++  +AR GKL   +FQG T S++N G          +   
Sbjct: 229 PAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKG 288

Query: 573 QAGILAVGRGNQVVEPVIGSDGNETPAVVTK-MNLTLSADHRVFEGKVGG 621
           Q  I+ VG      E    S+       ++K M LT + DHR+ +G   G
Sbjct: 289 QGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESG 338

Length = 1228

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 2/114 (1%)

Query: 85  SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL 144
             T V MP L  ++++G +  W K  GD +E+ + L E+ TDK   E  S   G L +I 
Sbjct: 125 EATEVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIR 184

Query: 145 VPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQE 198
            PE    V VG  +AI + DA+     PA     A ++  S    D    A   
Sbjct: 185 APE-DDTVEVGTVLAI-IGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHA 236

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 47.9 bits (115), Expect = 1e-05
 Identities = 39/157 (24%), Positives = 56/157 (35%), Gaps = 8/157 (5%)

Query: 132 FESLEEGFLAKILVPEGSKDVPV-GQPIAITVEDADDIQHIPATIAG-GAEAKEQSSTHQ 189
            E  E G L     P+ +      G P    VE   +   +   I G  AE K       
Sbjct: 439 LEEREAGELKPEPEPKEAAAAGAEGIPTEFKVEVDGEKYEVK--IEGVKAEGKRPFYLRV 496

Query: 190 DVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEI 249
           D   E V       I     P        A++  M  G + K +  EGDK++ GD +  +
Sbjct: 497 DGMPEEVVVEPLKEIVVGGRPRASAPG--AVTSPM-PGTVVKVKVKEGDKVKAGDTVLVL 553

Query: 250 ETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAI 286
           E  K   E +   +G + +IL  EG   V  G  +  
Sbjct: 554 EAMKMENEIQAPVDGTVKEILVKEG-DRVNPGDVLME 589

Length = 592

>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA 365
              SP+A+ L  E G+D S ++ +GP G + K DVLA
Sbjct: 3   VFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDVLA 39

This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit. Length = 39

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIA 159
            G + K   KEGDK+E G  L  +E  K   E  +   G + +ILV EG + V  GQ + 
Sbjct: 7   PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLV 65

Query: 160 I 160
           +
Sbjct: 66  V 66

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQP-IAITVE 163
           +W  KEGD++E    LCE+++DKAT+E  S  +G +A+I    G   V VG+  + I VE
Sbjct: 17  RWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVE 75

Query: 164 DADDIQHIPAT-------IAGGAEAKEQSSTHQDV 191
           D+  ++            I   AE+ E+ S    V
Sbjct: 76  DSQHLRSDSLLLPTDSSNIVSLAESDERGSNLSGV 110

Length = 416

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA 285
            G + K    EGDK+E G  +  +E  K   E      G + +IL  EG + V  GQ + 
Sbjct: 7   PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLV 65

Query: 286 I 286
           +
Sbjct: 66  V 66

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160
           G + K   + GD ++ G  L  IE  K   E E+  +G + +ILV  G   V  G P+A+
Sbjct: 79  GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGD-PVEYGDPLAV 137

Length = 140

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 189 QDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICE 248
                 A Q  +++                  SP    G + K     GD ++ G  +  
Sbjct: 46  SSPSAAAAQPAASAPAPAPAAAA---GGTQVTSPM--VGTVYKPFVEVGDTVKAGQTLAI 100

Query: 249 IETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAI 286
           IE  K   E E   +G + +IL   G   V  G P+A+
Sbjct: 101 IEAMKMENEIEAPADGVVKEILVKNGD-PVEYGDPLAV 137

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	622
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	100.0
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	100.0
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	100.0
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	100.0
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.95
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	99.85
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.82
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.78
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	99.74
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	99.73
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.73
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.71
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.69
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	99.66
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	99.66
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.65
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.65
PRK06748	83	hypothetical protein; Validated	99.63
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.61
PRK13757	219	chloramphenicol acetyltransferase; Provisional	99.61
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.6
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.58
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.55
PRK06748	83	hypothetical protein; Validated	99.55
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	99.53
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.52
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	99.5
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.49
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.48
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.46
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	99.45
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.41
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.39
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.38
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.36
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.3
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.3
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.29
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.27
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.25
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.24
PF02817	39	E3_binding: e3 binding domain; InterPro: IPR004167	99.24
COG4845	219	Chloramphenicol O-acetyltransferase [Defense mecha	99.24
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.21
PRK07051	80	hypothetical protein; Validated	99.21
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.19
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.17
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.16
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	99.11
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.11
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.11
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	99.11
PRK07051	80	hypothetical protein; Validated	99.07
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.04
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	98.99
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	98.97
PRK14042	596	pyruvate carboxylase subunit B; Provisional	98.94
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.94
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.85
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.85
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	98.81
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.79
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.79
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.73
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.7
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.68
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.65
PRK12999	1146	pyruvate carboxylase; Reviewed	98.57
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.54
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.48
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.44
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.39
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.38
PRK12999	1146	pyruvate carboxylase; Reviewed	98.37
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.21
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.08
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	97.91
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	97.88
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	97.84
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	97.83
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	97.74
PRK00624	114	glycine cleavage system protein H; Provisional	97.72
PRK13380	144	glycine cleavage system protein H; Provisional	97.64
PRK09783	409	copper/silver efflux system membrane fusion protei	97.56
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	97.54
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	97.53
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	97.52
PRK01202	127	glycine cleavage system protein H; Provisional	97.44
PRK00624	114	glycine cleavage system protein H; Provisional	97.43
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	97.43
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	97.41
PRK10476	346	multidrug resistance protein MdtN; Provisional	97.33
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	97.32
PRK13380	144	glycine cleavage system protein H; Provisional	97.3
PRK12784	84	hypothetical protein; Provisional	97.26
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.23
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	97.18
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.17
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.15
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.08
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.07
PRK09783	409	copper/silver efflux system membrane fusion protei	97.07
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	97.05
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	97.03
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	96.98
PRK09859	385	multidrug efflux system protein MdtE; Provisional	96.97
PRK01202	127	glycine cleavage system protein H; Provisional	96.96
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	96.96
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	96.89
PRK11578	370	macrolide transporter subunit MacA; Provisional	96.85
PRK10476	346	multidrug resistance protein MdtN; Provisional	96.82
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	96.8
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	96.78
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	96.72
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	96.68
PRK12784	84	hypothetical protein; Provisional	96.65
PRK15136	390	multidrug efflux system protein EmrA; Provisional	96.56
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	96.45
PRK03598	331	putative efflux pump membrane fusion protein; Prov	96.43
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	96.36
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	96.23
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	96.11
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	96.11
PRK09859	385	multidrug efflux system protein MdtE; Provisional	96.09
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	96.01
PRK11578	370	macrolide transporter subunit MacA; Provisional	95.77
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	95.7
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	95.38
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	95.36
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	95.12
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	94.8
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	94.39
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	94.28
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	93.9
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	93.83
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	93.65
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	93.26
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	93.23
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	93.02
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	92.35
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	92.22
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	92.17
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	92.16
PF13437	105	HlyD_3: HlyD family secretion protein	92.02
COG3608	331	Predicted deacylase [General function prediction o	91.58
COG3608	331	Predicted deacylase [General function prediction o	91.47
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	90.96
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	90.61
PF00529	305	HlyD: HlyD family secretion protein the correspond	90.59
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	89.85
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	89.5
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	89.44
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	89.42
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	89.34
PF13437	105	HlyD_3: HlyD family secretion protein	89.26
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	89.14
PRK14844	2836	bifunctional DNA-directed RNA polymerase subunit b	87.65
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	87.44
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	87.42
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	86.7
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	86.29
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	85.69
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	85.66
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	85.56
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	85.2
PF00529	305	HlyD: HlyD family secretion protein the correspond	85.18
PRK05305	206	phosphatidylserine decarboxylase; Provisional	84.82
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	84.48
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	84.27
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	83.87
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	83.5
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	83.03
PF02749	88	QRPTase_N: Quinolinate phosphoribosyl transferase,	82.34
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	80.49
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	80.4

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=1.6e-102  Score=876.78  Aligned_cols=531  Identities=28%  Similarity=0.409  Sum_probs=401.9

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      .+.|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+.+|+|.++++++||. |++|++|+.|...+
T Consensus         2 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~-v~vG~~ia~i~~~~   80 (590)
T TIGR02927         2 AFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDT-VDIGGEIAIIGEAG   80 (590)
T ss_pred             CeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCE-EeeeeeEEEEeecc
Confidence            36799999999999999999999999999999999999999999999999999999999999999 99999999997644


Q ss_pred             cccccccccccCCcccccccccccc--cch-hhhcc--ccccc---cCCCCCCCceeeecCCCCCCcccceeeEeeeCCC
Q 006995          166 DDIQHIPATIAGGAEAKEQSSTHQD--VKK-EAVQE--TSASR---INTSELPPRVVLEMPALSPTMNQGNIAKWRKNEG  237 (622)
Q Consensus       166 ~~~~~~~~~~~~~~~~a~~~~~~~~--~~p-a~~a~--a~s~~---~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~G  237 (622)
                      +...............+...+...+  ..+ ...+.  ..++.   .+........++.||++|++|++|+|++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~P~lg~~~~eg~i~~w~v~~G  160 (590)
T TIGR02927        81 EASAEAGAEDSAAAAEPEEAPAEEAPKEEPKAAPAESVEQAPAESSAPSQGGGAATDIEMPELGESVTEGTITQWLKAVG  160 (590)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCCceEEEcCCCCCCcceEEEEEEEeCCC
Confidence            3221111100000000000000000  000 00000  00000   0011112246899999999999999999999999


Q ss_pred             CeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCcCCc-C--CCC-C-------CCcc
Q 006995          238 DKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTV-K--NSV-T-------SGAE  306 (622)
Q Consensus       238 d~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~~~~-~--~~~-~-------~~~~  306 (622)
                      |.|++||+||+|||||++++|+|+++|+|.+|++++|+. |++|++|++|.+++++.... .  ... +       ..+.
T Consensus       161 d~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (590)
T TIGR02927       161 DKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDT-VDVGAEIAKIGDAGAAAAEDAKAEEEAEAKAEAKPEEKPD  239 (590)
T ss_pred             CEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCccccccccccccccccccccCCCCc
Confidence            999999999999999999999999999999999999998 99999999997544332110 0  000 0       0000


Q ss_pred             cCCC-C--CCC---C----CCcccc---c--cccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCC
Q 006995          307 VKGE-K--ETH---H----DSKDVV---K--VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGK  371 (622)
Q Consensus       307 ~~~~-~--~~~---~----~~~~~~---~--~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~  371 (622)
                      .... .  ..+   .    .....+   .  ......+++||+||+||+|+||||++|+|||++|||+|+||++|+....
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~GtG~~GrI~k~DV~~~~~~~~  319 (590)
T TIGR02927       240 PKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDLNSVKGTGIGGRIRKQDVLAAAEGAK  319 (590)
T ss_pred             cccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCHHHCCCCCCCCeEeHHHHHHHHhccc
Confidence            0000 0  000   0    000000   0  0011235689999999999999999999999999999999999975321


Q ss_pred             CccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHH
Q 006995          372 VSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRK  451 (622)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk  451 (622)
                      ... .+++...+.....+...+ ...+ .+.. ....++++|+++|||.|+++|++||+++||||++.+||+|+|+++|+
T Consensus       320 ~~~-~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~pls~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~R~  395 (590)
T TIGR02927       320 AAA-EAPAAEAAAAAPAAAAAA-SASP-APAK-AHLRGTTQKANRIREITAKKTREALQASAQLTQLHEVDMTKIAALRA  395 (590)
T ss_pred             ccc-ccccccccccCccccccc-cCCC-cccc-ccccCceeeccHHHHHHHHHHHHHhccCCeEEEEeEEEcHHHHHHHH
Confidence            100 000000000000000000 0000 0000 00124578999999999999999999999999999999999999999


Q ss_pred             HHhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHH
Q 006995          452 ELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAIS  527 (622)
Q Consensus       452 ~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia  527 (622)
                      ++|.    ++|.|+||++||+||+++||++||.||++|+++.++|++|++|||||||++++||++|||||+++|||.+|+
T Consensus       396 ~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~t~~GL~vPvIk~a~~~sl~~ia  475 (590)
T TIGR02927       396 RAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVDTDAGLLSPVIHNAGDLSLGEIA  475 (590)
T ss_pred             HHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEECCCCcEecccCCcccCCHHHHH
Confidence            9974    247899999999999999999999999999866557999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEE
Q 006995          528 MEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT  607 (622)
Q Consensus       528 ~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~ls  607 (622)
                      +++++|++|+|+|+|+++||+|||||||||||||+++|+||||+||+||||+|++.++|+++++.+|.+.+++|++|+||
T Consensus       476 ~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~~~~~~~~~m~ls  555 (590)
T TIGR02927       476 KAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAIRQMCHLP  555 (590)
T ss_pred             HHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCcccEEEEeeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999887433443359999999999


Q ss_pred             EEeecccccCccCCC
Q 006995          608 LSADHRVFEGKVGGT  622 (622)
Q Consensus       608 lt~DHRvvDGa~aa~  622 (622)
                      ||||||||||+++|+
T Consensus       556 ls~DHRviDGa~aa~  570 (590)
T TIGR02927       556 LTYDHQLIDGADAGR  570 (590)
T ss_pred             eeccchhcCcHHHHH
Confidence            999999999999875

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=8.3e-97  Score=824.70  Aligned_cols=510  Identities=25%  Similarity=0.366  Sum_probs=393.6

Q ss_pred             EEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCcc
Q 006995           88 VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD  167 (622)
Q Consensus        88 ~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~~  167 (622)
                      +|+||+||+. .+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++||. |.+|++|+.|+..+..
T Consensus         2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~-V~~G~~La~i~~~~~~   79 (546)
T TIGR01348         2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDT-LPVGGVIATLEVGAGA   79 (546)
T ss_pred             ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCE-EeccceEEEEeccccc
Confidence            5899999987 9999999999999999999999999999999999999999999999999999 9999999999643321


Q ss_pred             cccccccccCCcccccccccccccchhhhcc-ccccccCCCCCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCee
Q 006995          168 IQHIPATIAGGAEAKEQSSTHQDVKKEAVQE-TSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVI  246 (622)
Q Consensus       168 ~~~~~~~~~~~~~~a~~~~~~~~~~pa~~a~-a~s~~~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l  246 (622)
                      .... .......+....      ..+...+. ...+..  .......++.||++|+ |++|+|++|+|++||.|++||+|
T Consensus        80 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l  149 (546)
T TIGR01348        80 QAQA-EAKKEAAPAPTA------GAPAPAAQAQAAPAA--GQSSGVQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSL  149 (546)
T ss_pred             cccc-cccccccccccc------ccccccccccccccc--cccCCceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCee
Confidence            1100 000000000000      00000000 000000  0001136999999999 99999999999999999999999


Q ss_pred             EEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCcCCcCCCCC-----CCcccCCCCC--CCCCCcc
Q 006995          247 CEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVT-----SGAEVKGEKE--THHDSKD  319 (622)
Q Consensus       247 ~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~  319 (622)
                      |+|||||++++|++|++|+|.++++++|+. |++|++|+.|..++++....+....     ..+.+..+.+  .+....+
T Consensus       150 ~~vetdK~~~ei~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (546)
T TIGR01348       150 ITLESDKASMEVPAPASGVVKSVKVKVGDS-VPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKA  228 (546)
T ss_pred             EEEEecceeeEecCCCCcEEEEEecCCCCE-ecCCCEEEEEecCCCCcccccCcccccccCCCCccccccccCCCCCCCc
Confidence            999999999999999999999999999998 9999999999754432111100000     0000000000  0000000


Q ss_pred             -ccc-----cccCCCc-cCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCC
Q 006995          320 -VVK-----VQKGSFT-KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTS  392 (622)
Q Consensus       320 -~~~-----~~~~~~~-~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (622)
                       .+.     ....... ++||+||+||+||||||++|+|||++|||+++||++|+....... +..  ..+++... ...
T Consensus       229 ~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~-~~~--~~~~~~~~-~~~  304 (546)
T TIGR01348       229 QAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVRA-QAA--AASAAGGA-PGA  304 (546)
T ss_pred             cCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeEeHHHHHHHhhcccccc-Ccc--cccccCCc-ccc
Confidence             000     0011123 589999999999999999999999999999999999974321000 000  00000000 000


Q ss_pred             CCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh---hCCCCccHHHHHHH
Q 006995          393 TAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIK  469 (622)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~---~~g~k~t~~~~iik  469 (622)
                      +  +. +.........++++|+++|||.|+++|++|++++||||++.++|+|+|+++|+++|.   +.|.|+||++||+|
T Consensus       305 ~--~~-~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~k  381 (546)
T TIGR01348       305 L--PW-PNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITEMEAFRKQQNAAVEKEGVKLTVLHILMK  381 (546)
T ss_pred             C--CC-ccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHH
Confidence            0  00 000001111246789999999999999999999999999999999999999999984   35789999999999


Q ss_pred             HHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCC
Q 006995          470 AVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQG  549 (622)
Q Consensus       470 Ava~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~g  549 (622)
                      |+++||++||.||++|+++.+.|+++++|||||||++++||++|||||+++|||.+|++++++|++++|+|+|+++||+|
T Consensus       382 A~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~g  461 (546)
T TIGR01348       382 AVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQG  461 (546)
T ss_pred             HHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCC
Confidence            99999999999999998654569999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          550 GTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       550 gtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      |||||||+||||+++|+||||+||+||||+|++.++|++.++     +++++++|+||||||||||||+++|+
T Consensus       462 gTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~-----~~~~~~~m~ltls~DHRviDGa~aa~  529 (546)
T TIGR01348       462 ACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGK-----EFEPRLMLPLSLSYDHRVIDGADAAR  529 (546)
T ss_pred             CeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECC-----EEEEEEEEEEeEeccchhcChHHHHH
Confidence            999999999999999999999999999999999999987544     79999999999999999999999874

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=3.1e-92  Score=801.72  Aligned_cols=501  Identities=23%  Similarity=0.328  Sum_probs=394.2

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus        84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      .+++.++||++|  ++||+|++|+|++||.|++||+||++|+||+.++|.||++|+|.++++++|+. |..|++|+.|..
T Consensus       103 ~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~  179 (633)
T PRK11854        103 AAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VSTGSLIMVFEV  179 (633)
T ss_pred             CCceEEecccCC--CCCceEeEEEeCCCCEECCCCEeeeeehhhceeEEeCCCCEEEEEEEecCCCE-EcCCcEeeEEec
Confidence            456789999999  89999999999999999999999999999999999999999999999999999 999999999976


Q ss_pred             CCcccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCCcccceeeEeeeCCCCeeecC
Q 006995          164 DADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVG  243 (622)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pa~~a~a~s~~~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~g  243 (622)
                      .+....    ..+ .   .+ .    ...+     ...+.    ......++.||++|  |++|+|++|+|++||.|++|
T Consensus       180 ~~~~~~----~~~-~---~~-~----~~~~-----~~~~~----~a~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g  235 (633)
T PRK11854        180 AGEAPA----AAP-A---AA-E----AAAP-----AAAPA----AAAGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAE  235 (633)
T ss_pred             cccccc----ccc-c---cc-c----cccc-----ccccc----ccCCceEEecCCCc--ccceEEEEEEecCCCeecCC
Confidence            443211    000 0   00 0    0000     00000    01234689999999  99999999999999999999


Q ss_pred             CeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCcCCcCCCC-CCCcccCC-CCCCCCCCc--c
Q 006995          244 DVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSV-TSGAEVKG-EKETHHDSK--D  319 (622)
Q Consensus       244 d~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~--~  319 (622)
                      |+||+|||||++++|+||++|+|.+|++++|+. |++|++|+.|.+++++....+.+. ...+.+.. ..+.+...+  .
T Consensus       236 ~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~-v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (633)
T PRK11854        236 QSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAK  314 (633)
T ss_pred             CceEEEEecceeeEeeCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCCccccccccCCCCCCccccccCCCCCCCccc
Confidence            999999999999999999999999999999999 999999999975443211111100 00000000 000000000  0


Q ss_pred             ccc----cccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCC
Q 006995          320 VVK----VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAV  395 (622)
Q Consensus       320 ~~~----~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (622)
                      .+.    .......++||+||+||++|||||++|+||||+|||+++||++|+.........+++   ++  ......+..
T Consensus       315 ~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~---~~--~~~~~~~~~  389 (633)
T PRK11854        315 AEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAAPA---AA--AAGGGGPGL  389 (633)
T ss_pred             ccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHHHHHhhccccccccCCc---cc--ccccccccc
Confidence            000    011123568999999999999999999999999999999999997532110000000   00  000000000


Q ss_pred             CCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh-----hCCCCccHHHHHHHH
Q 006995          396 SPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE-----KHNTKVSVNDIVIKA  470 (622)
Q Consensus       396 ~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~-----~~g~k~t~~~~iikA  470 (622)
                      ...+..........+++||++|||.|+++|.+||+++||||++.++|+|+|+++|++++.     +.|.|+||++||+||
T Consensus       390 ~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likA  469 (633)
T PRK11854        390 LPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKA  469 (633)
T ss_pred             cccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHH
Confidence            000000001111245689999999999999999999999999999999999999998762     348899999999999


Q ss_pred             HHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCC
Q 006995          471 VAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGG  550 (622)
Q Consensus       471 va~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~gg  550 (622)
                      +++||++||+||++|+++.++|++|+++||||||++++||++||||++++++|.+|++++++|++++|+|+|+++|++||
T Consensus       470 va~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~gg  549 (633)
T PRK11854        470 VAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGG  549 (633)
T ss_pred             HHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCc
Confidence            99999999999999975445699999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          551 TFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       551 tftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      ||||||+||||+++|+|||||||+|||++|++.++|++.++     .+.+|++|+|||+||||||||+++|+
T Consensus       550 TftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~-----~~~~r~~m~lslt~DHRviDGa~aa~  616 (633)
T PRK11854        550 CFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGK-----EFAPRLMLPLSLSYDHRVIDGADGAR  616 (633)
T ss_pred             EEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEECC-----EEEEEEEEEEeEEccchhcchHHHHH
Confidence            99999999999999999999999999999999999877543     79999999999999999999999874

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=5.6e-91  Score=781.45  Aligned_cols=517  Identities=26%  Similarity=0.369  Sum_probs=393.5

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      .+.++||++|+ |++|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+. |.+|++|+.|++.+
T Consensus         2 ~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~-V~~G~~L~~i~~~~   79 (547)
T PRK11855          2 AIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT-VSVGGLLAVIEAAG   79 (547)
T ss_pred             CceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCE-ecCCceeeEecccc
Confidence            46799999999 99999999999999999999999999999999999999999999999999999 99999999996544


Q ss_pred             cccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCe
Q 006995          166 DDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV  245 (622)
Q Consensus       166 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pa~~a~a~s~~~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~  245 (622)
                      ........+........+.      ..+...++...... ........++.||++|+ |++|+|++|+|++||.|++||.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~  151 (547)
T PRK11855         80 AAAAAAAPAAAAAPAAAAA------AAPAPAAAAPAAAA-AAAGGGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQS  151 (547)
T ss_pred             ccccccccccccccccccc------cccccccccccccc-CcccCCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCe
Confidence            3111100000000000000      00000000000000 00011236899999999 9999999999999999999999


Q ss_pred             eEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCcCCcCCCCCCCcc-c-CC-CCCCCCCC--ccc
Q 006995          246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAE-V-KG-EKETHHDS--KDV  320 (622)
Q Consensus       246 l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~--~~~  320 (622)
                      |++||+||+.++|+||++|+|.++++++|+. |++|++|+.+.+.+++...........+. . .. +.+.+...  +..
T Consensus       152 l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~-v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (547)
T PRK11855        152 LITVETDKATMEIPSPVAGVVKEIKVKVGDK-VSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAA  230 (547)
T ss_pred             eEEEEecceeEEecCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCccccccCCCCCCCccccccCCCCCCcccccCCc
Confidence            9999999999999999999999999999999 99999999997653321010000000000 0 00 00000000  000


Q ss_pred             c--c-cccCCCc-cCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCC
Q 006995          321 V--K-VQKGSFT-KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVS  396 (622)
Q Consensus       321 ~--~-~~~~~~~-~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (622)
                      .  . ....... ++||+||+||+||||||++|+|||++|||+++||++|+....... ..++  .++........+...
T Consensus       231 ~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~  307 (547)
T PRK11855        231 AAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAA-AAAA--AAAAAAGGGGLGLLP  307 (547)
T ss_pred             cccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHHHHHHhhcccccc-cccc--ccccccccccccccC
Confidence            0  0 0011223 689999999999999999999999999999999999975321110 0000  000000000000000


Q ss_pred             CCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh---hCCCCccHHHHHHHHHHH
Q 006995          397 PGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAV  473 (622)
Q Consensus       397 ~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~---~~g~k~t~~~~iikAva~  473 (622)
                      .+. .........+++|+++|||.|+++|++||+++||||++.++|+|+|+++|++++.   +.|.|+||++||+||+++
T Consensus       308 ~~~-~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~  386 (547)
T PRK11855        308 WPK-VDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVA  386 (547)
T ss_pred             Ccc-ccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHH
Confidence            000 0000111245689999999999999999999999999999999999999999873   357899999999999999


Q ss_pred             HHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEE
Q 006995          474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFS  553 (622)
Q Consensus       474 Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtft  553 (622)
                      ||++||+||++|+++.+.|++|+++||||||++++||++|+|+|+++++|.+|++++++|++++|+|+|.++|++|||||
T Consensus       387 al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtft  466 (547)
T PRK11855        387 ALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFT  466 (547)
T ss_pred             HHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEE
Confidence            99999999999986435699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          554 ISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       554 ISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      |||+||||+++|+|+|||||+|||++|++.++|++.++     .+.++.+|+|||+||||||||+++|+
T Consensus       467 iSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~-----~~~~r~~m~lslt~DHRviDG~~aa~  530 (547)
T PRK11855        467 ISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGK-----EFVPRLMLPLSLSYDHRVIDGATAAR  530 (547)
T ss_pred             EeCCccccccceecCcCCCceEEEEcccceEeeeeeCC-----EEEEEeEEEEeEEccchhcCcHHHHH
Confidence            99999999999999999999999999999999855332     68999999999999999999999874

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=2.7e-84  Score=699.23  Aligned_cols=382  Identities=36%  Similarity=0.524  Sum_probs=317.2

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~  292 (622)
                      .++.||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|++|.++++
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~~   81 (407)
T PRK05704          3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT-VTVGQVLGRIDEGAA   81 (407)
T ss_pred             eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCCc
Confidence            4789999999999999999999999999999999999999999999999999999999999998 999999999975543


Q ss_pred             CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCC
Q 006995          293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV  372 (622)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~  372 (622)
                      +.+..+.+...++    +.+.+....+.+. .......+||+||+||+|+||||++|+|||++|||+++||++|+.....
T Consensus        82 ~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~  156 (407)
T PRK05704         82 AGAAAAAAAAAAA----AAAAPAQAQAAAA-AEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAA  156 (407)
T ss_pred             ccccCCCCCCCCC----CCCCCCCCCCCcc-CCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccc
Confidence            2221111000000    0000000001111 1112346899999999999999999999999999999999999742110


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHH
Q 006995          373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE  452 (622)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~  452 (622)
                      ..  .+    ++ ..  ...+   .+. ..  .....+.+|+++|||.|+++|++||+++||||++.++|+|+|+++|++
T Consensus       157 ~~--~~----~~-~~--~~~~---~~~-~~--~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~  221 (407)
T PRK05704        157 AP--AA----PA-AA--APAA---APA-PL--GARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQ  221 (407)
T ss_pred             cC--CC----CC-CC--CCcC---CCc-cc--cCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHH
Confidence            00  00    00 00  0000   000 00  011135689999999999999999999999999999999999999999


Q ss_pred             Hhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHH
Q 006995          453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM  528 (622)
Q Consensus       453 ~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~  528 (622)
                      +|.    +.|.|+||++||+||+++||++||.||++|+++.  +++++++||||||++++||++|||||++++||.||++
T Consensus       222 ~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~--i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~  299 (407)
T PRK05704        222 YKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDD--IVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEK  299 (407)
T ss_pred             HHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCe--EEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHH
Confidence            973    2478999999999999999999999999998764  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEE
Q 006995          529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL  608 (622)
Q Consensus       529 ~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lsl  608 (622)
                      ++++|++++|+|+|+++|++||||||||+||||+.+|+|||||||+||||+|++.++|++.+|     +++++++|+|||
T Consensus       300 ~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g-----~i~~r~~~~lsl  374 (407)
T PRK05704        300 KIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNG-----QIVIRPMMYLAL  374 (407)
T ss_pred             HHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECC-----EEEEEEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999988755     799999999999


Q ss_pred             EeecccccCccCCC
Q 006995          609 SADHRVFEGKVGGT  622 (622)
Q Consensus       609 t~DHRvvDGa~aa~  622 (622)
                      |||||||||++||+
T Consensus       375 s~DHRviDGa~aa~  388 (407)
T PRK05704        375 SYDHRIIDGKEAVG  388 (407)
T ss_pred             EechhhhCcHHHHH
Confidence            99999999999874

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=1.1e-83  Score=692.98  Aligned_cols=380  Identities=34%  Similarity=0.503  Sum_probs=316.3

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~  292 (622)
                      +++.||++|++|++|+|++|+|++||.|++||+|++|||||++++|+|+.+|+|.+|++++|+. |++|++|++|.++++
T Consensus         1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~-v~vG~~l~~i~~~~~   79 (403)
T TIGR01347         1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT-VESGQVLAILEEGND   79 (403)
T ss_pred             CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCCC
Confidence            3689999999999999999999999999999999999999999999999999999999999998 999999999975432


Q ss_pred             CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCC
Q 006995          293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV  372 (622)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~  372 (622)
                      ..+ .... ...+.. . ...+....+.+. .......+||+||+||+|+||||++|+|||++|||+++||++|+.....
T Consensus        80 ~~~-~~~~-~~~~~~-~-~~~~~~~~~~~~-~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~  154 (403)
T TIGR01347        80 ATA-APPA-KSGEEK-E-ETPAASAAAAPT-AAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPAS  154 (403)
T ss_pred             Ccc-cccc-cccCCC-C-CCCCCCCCCCCc-CccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccc
Confidence            111 0000 000000 0 000000011111 1112346899999999999999999999999999999999999742110


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHH
Q 006995          373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE  452 (622)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~  452 (622)
                      ..  .+      ..  +.+.+   .+...   . ...+.+|+++|||+|+++|++||+++||||++.++|+|+|+++|++
T Consensus       155 ~~--~~------~~--~~~~~---~~~~~---~-~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~  217 (403)
T TIGR01347       155 AQ--AP------AP--AAAAK---APANF---T-RPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKR  217 (403)
T ss_pred             cC--CC------CC--CcccC---Ccccc---C-CCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHH
Confidence            00  00      00  00000   00000   0 1235689999999999999999999999999999999999999999


Q ss_pred             Hhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHH
Q 006995          453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM  528 (622)
Q Consensus       453 ~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~  528 (622)
                      +|.    +.|.|+||++||+||+++||++||.||++|++++  |++++++||||||++++||++||||++++|||.+|++
T Consensus       218 ~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~--i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~  295 (403)
T TIGR01347       218 YKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDD--IVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEK  295 (403)
T ss_pred             HHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCE--EEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHH
Confidence            873    3478999999999999999999999999998754  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEE
Q 006995          529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL  608 (622)
Q Consensus       529 ~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lsl  608 (622)
                      ++++|++++|+|+|+++|++||||||||+||||+.+|+|||||||+||||+|++.++|++.+|     ++++|++|+|||
T Consensus       296 ~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g-----~i~~r~~m~lsL  370 (403)
T TIGR01347       296 EIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNG-----QIEIRPMMYLAL  370 (403)
T ss_pred             HHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEECC-----eEEEEEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999988754     799999999999


Q ss_pred             EeecccccCccCCC
Q 006995          609 SADHRVFEGKVGGT  622 (622)
Q Consensus       609 t~DHRvvDGa~aa~  622 (622)
                      |||||||||++||+
T Consensus       371 t~DHRviDGa~aa~  384 (403)
T TIGR01347       371 SYDHRLIDGKEAVT  384 (403)
T ss_pred             EecchhhChHHHHH
Confidence            99999999999874

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=2.1e-83  Score=704.95  Aligned_cols=390  Identities=45%  Similarity=0.744  Sum_probs=320.0

Q ss_pred             CCCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC-eecccCCeEE
Q 006995          207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIA  285 (622)
Q Consensus       207 ~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~-~~v~vG~~l~  285 (622)
                      +..+++.++.||++|++|++|+|++|+|++||.|++||+||+|||||++++++++.+|+|.+|++++|+ . |++|++|+
T Consensus       107 ~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~-v~vG~~ia  185 (539)
T PLN02744        107 SDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE-IKVGEVIA  185 (539)
T ss_pred             ccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc-cCCCCEEE
Confidence            345678999999999999999999999999999999999999999999999999999999999999996 6 99999999


Q ss_pred             EEecCCCCcCCcC--------CCCCCCc--ccCCCC-C---CCCCCcc--ccc--c--ccCCCccCChhHHhHHHHcCCC
Q 006995          286 ITVEDPGDVGTVK--------NSVTSGA--EVKGEK-E---THHDSKD--VVK--V--QKGSFTKISPSAKLLILEHGLD  345 (622)
Q Consensus       286 ~i~~~~~~~~~~~--------~~~~~~~--~~~~~~-~---~~~~~~~--~~~--~--~~~~~~~asP~aR~lA~e~giD  345 (622)
                      ++.+++++.+.+.        ....+++  .+..+. +   .+...+.  .+.  .  .....+++||+||+||+|+|||
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVD  265 (539)
T PLN02744        186 ITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVP  265 (539)
T ss_pred             EEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHHHHHHcCCC
Confidence            9865444321110        0000000  000000 0   0000000  000  0  0112346899999999999999


Q ss_pred             cccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHh
Q 006995          346 ASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRL  425 (622)
Q Consensus       346 ls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m  425 (622)
                      |+.|+||||+|||+++||++|+.......    +  .   +   .+.+     . . .+. ..++++|+++|||.|+++|
T Consensus       266 Ls~V~GTGp~GRI~k~DV~a~~~~~~~~~----~--~---~---~~~~-----~-~-~~~-~~~~~vpls~~Rk~IA~~m  325 (539)
T PLN02744        266 LSSIKGTGPDGRIVKADIEDYLASGGKGA----T--A---P---PSTD-----S-K-APA-LDYTDIPNTQIRKVTASRL  325 (539)
T ss_pred             HHHCCCCCCCCcccHHHHHHHhhcccccc----C--C---C---CCcc-----c-C-CCC-CccccccchhHHHHHHHHH
Confidence            99999999999999999999974211000    0  0   0   0000     0 0 000 0245689999999999999


Q ss_pred             hhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEE
Q 006995          426 LESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDIS  501 (622)
Q Consensus       426 ~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnig  501 (622)
                      ++||+++||||++.++|+|+|+++|+++|.    ..|.|+||++||+||+++||++||+||++|+++.  |+++++||||
T Consensus       326 ~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~--i~~~~~vnIg  403 (539)
T PLN02744        326 LQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDY--IRQYHNVNIN  403 (539)
T ss_pred             HHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCc--EEEeCCcceE
Confidence            999999999999999999999999999973    2378999999999999999999999999998764  9999999999


Q ss_pred             EEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCC-CCCccceeeecCCCceEEEEec
Q 006995          502 IAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLG-MFPVDQFCAIINPPQAGILAVG  580 (622)
Q Consensus       502 iAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG-~~G~~~~tpii~~pq~ail~vG  580 (622)
                      |||++++||++|||+|+++|+|.||++++++|.+++|+|+|+++||+||||||||+| |||+.+|+|||||||+||||+|
T Consensus       404 vAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG  483 (539)
T PLN02744        404 VAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVG  483 (539)
T ss_pred             EEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcc
Confidence            999999999999999999999999999999999999999999999999999999998 8999999999999999999999


Q ss_pred             cceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          581 RGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       581 ~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      ++.++|++.+ .+|  +++++++|+||||||||||||++||+
T Consensus       484 ~i~~~pvv~~-~~g--~i~~r~~m~lsLs~DHRvIDGa~AA~  522 (539)
T PLN02744        484 SAEKRVIPGS-GPD--QYNFASFMSVTLSCDHRVIDGAIGAE  522 (539)
T ss_pred             cceeEeEEec-cCC--eEEEeeeeEEeEecchhhhCcHHHHH
Confidence            9999987742 233  79999999999999999999999874

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=100.00  E-value=5.7e-83  Score=668.45  Aligned_cols=399  Identities=50%  Similarity=0.751  Sum_probs=334.7

Q ss_pred             CCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       209 ~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      .+.|..|.||.|++||++|+|++|.++|||.+++||+||||||||++|++|.+++|||++|+++||..+|+||.+||+|+
T Consensus        35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            68899999999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             cCCCCcCCcCCCCC------CCcccCC-CCCCCC---CCccc--------ccccc-CCCccCChhHHhHHHHcCCCcccc
Q 006995          289 EDPGDVGTVKNSVT------SGAEVKG-EKETHH---DSKDV--------VKVQK-GSFTKISPSAKLLILEHGLDASSL  349 (622)
Q Consensus       289 ~~~~~~~~~~~~~~------~~~~~~~-~~~~~~---~~~~~--------~~~~~-~~~~~asP~aR~lA~e~giDls~v  349 (622)
                      +++++++++.....      ..+.+++ +++++.   +.+.+        +.... ....++||++|+||.|+|||++.|
T Consensus       115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i  194 (470)
T KOG0557|consen  115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI  194 (470)
T ss_pred             cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence            99998877642111      1111111 111100   01100        10011 224569999999999999999999


Q ss_pred             cccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhcc
Q 006995          350 QASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESK  429 (622)
Q Consensus       350 ~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~  429 (622)
                      .||||+|||++.||++|+..+.......+      ++..+..++     +++.. ....|+++|+++||+.|+++|.+|+
T Consensus       195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~------~~~~~~~~~-----~a~~~-~~~~~~diP~s~mr~viakrl~eSk  262 (470)
T KOG0557|consen  195 PGTGPHGRILKGDIEKHVGSGKKKSAKAP------KASAPPPAP-----AAPPV-SLPGYEDIPVSNMRRVIAKRLLESK  262 (470)
T ss_pred             cCcCCCceeehhhHHHhhcccccccccCC------CccCCCcCc-----cCCcC-CCCcccccccchhhhhhhhhhhhhh
Confidence            99999999999999999875431111000      000001111     11111 1123999999999999999999999


Q ss_pred             CCcceEEEEeeeechHHHHHHHHHh-hhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCC
Q 006995          430 QNTPHLYLSSDVVLDPLLSFRKELK-EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK  508 (622)
Q Consensus       430 ~~iP~~~~~~evdvt~l~~~rk~~k-~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~  508 (622)
                      ++|||+|++.++++++|+++|+++| ++.+.++|+++||+||++.||+++|++|++|+++ ..|+++++|||++||++++
T Consensus       263 ~~IPh~yvt~~~~~d~ll~~r~~ln~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~-~~i~~~~~VdisvAVat~~  341 (470)
T KOG0557|consen  263 QTIPHYYVTVDVNLDKLLALREKLNFEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDE-LVIRQLSSVDISVAVATPN  341 (470)
T ss_pred             cCCCeEEEeeeeehHHHHHHHHHhhhcccCcccchhHHHHHHHHHHHhcCCcccceecCC-ccccccCcCChhheeeccC
Confidence            9999999999999999999999998 5567899999999999999999999999999986 5699999999999999999


Q ss_pred             CeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEE
Q 006995          509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP  588 (622)
Q Consensus       509 GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~  588 (622)
                      ||++|+|+|++.+.+.+|.+++.+|+.++|.|+|.|+||+|||||||||||||++.|++||||||.|||++|...+..++
T Consensus       342 GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~  421 (470)
T KOG0557|consen  342 GLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVP  421 (470)
T ss_pred             cccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987665


Q ss_pred             eeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       589 ~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      .  .++.+++.....|+|||++|||++||+.|||
T Consensus       422 d--~~~~~~~~~~~~m~VTls~DhRvvdga~aa~  453 (470)
T KOG0557|consen  422 D--ANGPEKFSVINAMTVTLSADHRVVDGAVAAR  453 (470)
T ss_pred             C--CCcccccceeeeeEEEEecCcceecHHHHHH
Confidence            3  3344479999999999999999999998874

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=3.9e-81  Score=677.00  Aligned_cols=393  Identities=24%  Similarity=0.364  Sum_probs=314.9

Q ss_pred             eecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCc
Q 006995          215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV  294 (622)
Q Consensus       215 ~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~  294 (622)
                      +.||++|++|++|+|++|+|++||.|++||+|+++||||+.++++++.+|+|.++++++|+. |++|++|+.|..++++.
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~   79 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVEDSQH   79 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEeccCCcc
Confidence            47899999999999999999999999999999999999999999999999999999999998 99999999986443322


Q ss_pred             CCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCcc
Q 006995          295 GTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSS  374 (622)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~  374 (622)
                      .....  ...+...  .+.+....+..........++||+||+||+++||||++|+|||++|||+++||++|+.......
T Consensus        80 ~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~  155 (416)
T PLN02528         80 LRSDS--LLLPTDS--SNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVK  155 (416)
T ss_pred             ccccC--CCCCCCC--ccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhcccccc
Confidence            11000  0000000  0000000000001111224689999999999999999999999999999999999975321100


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHh
Q 006995          375 RISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK  454 (622)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k  454 (622)
                      .++++ ..+.   .+...+.+..+..+. ......+.+|+++|||.|+++|++|+ ++||||++.+||+|+|+++|++++
T Consensus       156 ~~~~~-~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~  229 (416)
T PLN02528        156 DSSSA-EEAT---IAEQEEFSTSVSTPT-EQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQ  229 (416)
T ss_pred             ccccc-cccc---CCccccccccCCCcc-cccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHh
Confidence            00000 0000   000000000000000 00011356899999999999999996 999999999999999999999997


Q ss_pred             h---hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHH
Q 006995          455 E---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVK  531 (622)
Q Consensus       455 ~---~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~  531 (622)
                      .   ..|.|+||++||+||+++||++||.||++|+++++.|++|+++||||||++++||++||||+++++||.+|+++++
T Consensus       230 ~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~  309 (416)
T PLN02528        230 ENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELS  309 (416)
T ss_pred             hhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHH
Confidence            3   3588999999999999999999999999998765569999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEee
Q 006995          532 ELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSAD  611 (622)
Q Consensus       532 ~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~D  611 (622)
                      +|++++|+|+|+++||+||||||||+||||+++|+|||||||+||||+|++.++|++.+  +|  ++++|++|+||||||
T Consensus       310 ~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~--~g--~i~~r~~m~lslt~D  385 (416)
T PLN02528        310 RLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVD--DG--NVYPASIMTVTIGAD  385 (416)
T ss_pred             HHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeC--CC--cEEEEeEEEEeEecc
Confidence            99999999999999999999999999999999999999999999999999999988763  23  799999999999999


Q ss_pred             cccccCccCCC
Q 006995          612 HRVFEGKVGGT  622 (622)
Q Consensus       612 HRvvDGa~aa~  622 (622)
                      ||||||++||+
T Consensus       386 HRviDGa~aa~  396 (416)
T PLN02528        386 HRVLDGATVAR  396 (416)
T ss_pred             chhcCcHHHHH
Confidence            99999999874

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=2.9e-81  Score=681.57  Aligned_cols=393  Identities=50%  Similarity=0.722  Sum_probs=316.5

Q ss_pred             eeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCC
Q 006995          214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGD  293 (622)
Q Consensus       214 ~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~  293 (622)
                      ++.||++|++|++|+|.+|+|++||.|+.||+||+|||||++++|+|+.+|+|.+|++++|+..|++|++|++|.+++++
T Consensus         1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~   80 (435)
T TIGR01349         1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED   80 (435)
T ss_pred             CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCc
Confidence            36899999999999999999999999999999999999999999999999999999999998559999999999654333


Q ss_pred             cC-CcCC-----C-CCCCccc---C-C---CCC--CCCCCcccc---cc----ccCCCccCChhHHhHHHHcCCCccccc
Q 006995          294 VG-TVKN-----S-VTSGAEV---K-G---EKE--THHDSKDVV---KV----QKGSFTKISPSAKLLILEHGLDASSLQ  350 (622)
Q Consensus       294 ~~-~~~~-----~-~~~~~~~---~-~---~~~--~~~~~~~~~---~~----~~~~~~~asP~aR~lA~e~giDls~v~  350 (622)
                      .+ ..+.     . ....+..   . +   +.+  .+....+.+   ..    .....+++||+||+||+||||||++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~  160 (435)
T TIGR01349        81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA  160 (435)
T ss_pred             cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCC
Confidence            21 1000     0 0000000   0 0   000  000000000   00    011134689999999999999999999


Q ss_pred             ccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccC
Q 006995          351 ASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQ  430 (622)
Q Consensus       351 gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~  430 (622)
                      |||++|||+++||++|+.... ...+.+     ++    ...+.......+.  .....+.+||++|||.|+++|++||+
T Consensus       161 gtG~~GrI~~~DV~~~~~~~~-~~~~~~-----~~----~~~~~~~~~~~~~--~~~~~~~v~ls~~rk~ia~~m~~S~~  228 (435)
T TIGR01349       161 GSGPNGRIVKKDIESFVPQSP-ASANFQ-----AA----ATTPATKKAAAPV--STGSYEDVPLSNIRKIIAKRLLESKQ  228 (435)
T ss_pred             CCCCCCceeHHHHHHHHhccc-ccCCCc-----cc----cccccccccCCCc--cCCcceeecccHHHHHHHHHHHHHHh
Confidence            999999999999999975311 000000     00    0000000000000  11124668999999999999999999


Q ss_pred             CcceEEEEeeeechHHHHHHHHHhhh--CCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCC
Q 006995          431 NTPHLYLSSDVVLDPLLSFRKELKEK--HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK  508 (622)
Q Consensus       431 ~iP~~~~~~evdvt~l~~~rk~~k~~--~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~  508 (622)
                      ++||||++.++|+|+|+++|++++..  .|.|+||++||+||+++||++||.||++|+++.  |++|++|||||||++++
T Consensus       229 ~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~--i~~~~~vnigvAv~~~~  306 (435)
T TIGR01349       229 TIPHYYVSIECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWTDNF--IRRYKNVDISVAVATPD  306 (435)
T ss_pred             hCCeEEEEEEEEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHhheEEeCCe--EEEeCCeeEEEEEECCC
Confidence            99999999999999999999999843  278999999999999999999999999998754  99999999999999999


Q ss_pred             CeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEE
Q 006995          509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP  588 (622)
Q Consensus       509 GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~  588 (622)
                      ||++|||||+++|||.||++++++|++++|+|+|+++||+||||||||+||||+++|+|||||||+||||+|++.++|++
T Consensus       307 GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~  386 (435)
T TIGR01349       307 GLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVV  386 (435)
T ss_pred             CeEECCCCCcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       589 ~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      ++|.++  .++++++|+||||||||||||++||+
T Consensus       387 ~~~~~~--~i~~~~~m~lsls~DHRviDGa~aa~  418 (435)
T TIGR01349       387 DNDEEK--GFAVASIMSVTLSCDHRVIDGAVGAE  418 (435)
T ss_pred             eCCccc--eeEEeeeEEEeEeecchhhCcHHHHH
Confidence            765222  49999999999999999999999874

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=1.1e-78  Score=655.17  Aligned_cols=381  Identities=40%  Similarity=0.593  Sum_probs=321.2

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~  292 (622)
                      .+|+||+||++|+||+|++|+||+||+|++||+|+||||||+++||+||++|+|.+|++++|++ |++|++|++|.++++
T Consensus         3 ~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~Vg~~I~~i~~~~~   81 (404)
T COG0508           3 IEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPVGAVIARIEEEGA   81 (404)
T ss_pred             ceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcCCCeEEEEecCCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999 999999999987665


Q ss_pred             CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCC
Q 006995          293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV  372 (622)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~  372 (622)
                      +.++.... ...+    ..+.++..+............+||++|+||+|+|||++++.|||++|||+++|++.++.... 
T Consensus        82 ~~~a~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~-  155 (404)
T COG0508          82 DAPAAAEA-PPEP----AAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKA-  155 (404)
T ss_pred             cccccCcc-cCCc----cccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhccccc-
Confidence            43111100 0000    00000000000000011345799999999999999999999999999999999999876430 


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHH
Q 006995          373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE  452 (622)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~  452 (622)
                      ..  +.           ...+ ++  +.+ ......++++|++++||.|+.+|.+|++++||+|.+.++|++.|+++|++
T Consensus       156 ~~--~~-----------~~~~-~~--~~~-~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~  218 (404)
T COG0508         156 AA--AA-----------APAP-AA--AAP-ASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKK  218 (404)
T ss_pred             cc--cc-----------cccc-cc--CCc-ccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHH
Confidence            00  00           0000 00  000 02224578899999999999999999999999999999999999999999


Q ss_pred             Hhhh---CCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHH
Q 006995          453 LKEK---HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISME  529 (622)
Q Consensus       453 ~k~~---~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~  529 (622)
                      ++..   .|.|+||++|++||++.||++||.+|++|+++...+++++++|||+||++++||++||||+++++++.+|+++
T Consensus       219 ~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~  298 (404)
T COG0508         219 LKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKE  298 (404)
T ss_pred             hhhhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHH
Confidence            9832   2899999999999999999999999988886411699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEE
Q 006995          530 VKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLS  609 (622)
Q Consensus       530 ~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt  609 (622)
                      +.+|..++|+|+|+++|++||||||||+|+||...|+||||+||+||||+|++.++|++.++     ++.++++|+|+||
T Consensus       299 i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~-----~i~~~~mm~lsls  373 (404)
T COG0508         299 IKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGG-----EIVVRPMMYLSLS  373 (404)
T ss_pred             HHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEecC-----ceeeEeeEeeccc
Confidence            99999999999999999999999999999999999999999999999999999999988765     7999999999999


Q ss_pred             eecccccCccCCC
Q 006995          610 ADHRVFEGKVGGT  622 (622)
Q Consensus       610 ~DHRvvDGa~aa~  622 (622)
                      ||||++||+++++
T Consensus       374 ~DHRviDGa~aa~  386 (404)
T COG0508         374 YDHRVIDGAEAAR  386 (404)
T ss_pred             ccccccccHHHHH
Confidence            9999999999874

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=4.1e-77  Score=597.49  Aligned_cols=392  Identities=26%  Similarity=0.369  Sum_probs=319.8

Q ss_pred             CCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995           82 ELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus        82 ~~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      .....++|+|.|+||+|.|++|.+|||||||+|+++|.||||++||++++|+|+++|+|++|+.+.+|+ +.||++|.++
T Consensus        60 s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddi-a~VGk~Lvd~  138 (474)
T KOG0558|consen   60 SNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDI-AKVGKPLVDL  138 (474)
T ss_pred             cccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhh-hHhCcceeee
Confidence            345689999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             EcCCcccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCCcccceeeEeeeCCCCeee
Q 006995          162 VEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIE  241 (622)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pa~~a~a~s~~~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~  241 (622)
                      +.++.....      ..                      +..+             |                       
T Consensus       139 eve~~~ds~------e~----------------------s~es-------------~-----------------------  154 (474)
T KOG0558|consen  139 EVEDSQDSP------ED----------------------SDES-------------P-----------------------  154 (474)
T ss_pred             eeccCcCCc------cc----------------------CCcc-------------c-----------------------
Confidence            754421100      00                      0000             0                       


Q ss_pred             cCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCCCcCCcCCCCCCCcccCCCCCCCCCCcccc
Q 006995          242 VGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVV  321 (622)
Q Consensus       242 ~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (622)
                                 +                 +..|..                            +               .
T Consensus       155 -----------~-----------------vs~~~~----------------------------~---------------~  163 (474)
T KOG0558|consen  155 -----------A-----------------VSLGES----------------------------K---------------Q  163 (474)
T ss_pred             -----------c-----------------ccCCCC----------------------------c---------------h
Confidence                       0                 000000                            0               0


Q ss_pred             ccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006995          322 KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKS  401 (622)
Q Consensus       322 ~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (622)
                      ...+.....++|++||||.|+||||+.|.|||++|||+|+||++|+.+..+--....       +.-....| .+.|+..
T Consensus       164 ~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~-------~~~~a~~~-~~~ps~~  235 (474)
T KOG0558|consen  164 GEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPS-------PSEHAVIP-GPSPSTK  235 (474)
T ss_pred             hhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCC-------CceeecCC-CCCCccc
Confidence            001112235899999999999999999999999999999999999864311100000       00000000 0001110


Q ss_pred             CccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHh---hhCCCCccHHHHHHHHHHHHHhhc
Q 006995          402 DLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNV  478 (622)
Q Consensus       402 ~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k---~~~g~k~t~~~~iikAva~Al~~~  478 (622)
                      ..+.-.....+|+.+.+|+|-+.|+++ ..||||.+..|||+|.|++||+++|   .+.|+|+||++|++||++.||.++
T Consensus       236 a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y~dEIn~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~ky  314 (474)
T KOG0558|consen  236 ASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGYVDEINCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKY  314 (474)
T ss_pred             ccCcccccceeechhHHHHHHHHHHHH-hcCCccccccccChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhC
Confidence            001111245679999999999999999 7999999999999999999999997   567899999999999999999999


Q ss_pred             cccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCC
Q 006995          479 PEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLG  558 (622)
Q Consensus       479 P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG  558 (622)
                      |.+|++++.+...|++...+|||+|+++++||++|.|+|++.+||.||++++++|.++.+.|+|+++|+.|||||+||+|
T Consensus       315 P~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG  394 (474)
T KOG0558|consen  315 PIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIG  394 (474)
T ss_pred             ccccchhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecc
Confidence            99999999876679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          559 MFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       559 ~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      .+|.++..|+|++||+||.++|++.+.|+..  ..|  ++....+|.++|++||||+||+..||
T Consensus       395 ~IGGtf~~P~i~~PeVAIgAlGrie~vPrFn--kk~--~V~~a~IM~VswsADHRViDGaTmar  454 (474)
T KOG0558|consen  395 AIGGTFASPVIMPPEVAIGALGRIEKVPRFN--KKG--EVYPASIMMVSWSADHRVIDGATMAR  454 (474)
T ss_pred             cccccccCcccccchhhhhhccccccccccC--CCC--CEEEeEEEEEEeecCceeeccHHHHH
Confidence            9999999999999999999999999765553  333  79999999999999999999998764

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=1.6e-74  Score=622.78  Aligned_cols=344  Identities=28%  Similarity=0.427  Sum_probs=282.2

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~  292 (622)
                      .++.||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+. |++|++|++|.++++
T Consensus        92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~-V~vG~~L~~I~~~~~  170 (463)
T PLN02226         92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT-VEPGTKVAIISKSED  170 (463)
T ss_pred             eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE-ecCCCEEEEeccCCc
Confidence            5899999999999999999999999999999999999999999999999999999999999999 999999999964332


Q ss_pred             CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCccccc-----ccCCCCeeechhhHHHH
Q 006995          293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQ-----ASGPYGTLLKGDVLAAI  367 (622)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~-----gtGp~GrI~k~DV~~~~  367 (622)
                      +.+. ..  . .+  .++.  .  ..+.+..         +..|++  +++++++.+.     ++|+.+           
T Consensus       171 ~~~~-~~--~-~~--~~~~--~--~~~~~~~---------~~~~~~--~~~v~asp~~r~~~~~~~~~~-----------  218 (463)
T PLN02226        171 AASQ-VT--P-SQ--KIPE--T--TDPKPSP---------PAEDKQ--KPKVESAPVAEKPKAPSSPPP-----------  218 (463)
T ss_pred             cccc-cC--c-cC--CCCC--C--CCCCCCC---------cccccc--ccCCCcchhhccccCCCCCCC-----------
Confidence            1110 00  0 00  0000  0  0000000         000111  4455555443     011100           


Q ss_pred             hcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHH
Q 006995          368 KSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLL  447 (622)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~  447 (622)
                                           + +.+ ...+..   ......+.+|+++|||.||++|++||+++||||++.|+|+|+|+
T Consensus       219 ---------------------~-~~~-~~~~~~---~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~  272 (463)
T PLN02226        219 ---------------------P-KQS-AKEPQL---PPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLM  272 (463)
T ss_pred             ---------------------C-ccc-ccCccc---ccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHH
Confidence                                 0 000 000000   00001356899999999999999999999999999999999999


Q ss_pred             HHHHHHhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCH
Q 006995          448 SFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSI  523 (622)
Q Consensus       448 ~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl  523 (622)
                      ++|+++|.    +.|.|+||++||+||+++||++||.+|++|+++.  |+++++|||||||++++||++|||||+++++|
T Consensus       273 ~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~--i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl  350 (463)
T PLN02226        273 KLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDD--IIYRDYVDISIAVGTSKGLVVPVIRGADKMNF  350 (463)
T ss_pred             HHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCE--EEEeCcccEEEEEECCCCEEeccCCCcccCCH
Confidence            99999973    3488999999999999999999999999998754  99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcE
Q 006995          524 SAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTK  603 (622)
Q Consensus       524 ~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~  603 (622)
                      .||++++++|++++|+|+|+++|++||||||||+|+||+++|+|||||||+||||+|++.++|++.+|     ++++|++
T Consensus       351 ~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g-----~i~~r~~  425 (463)
T PLN02226        351 AEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGG-----SVVPRPM  425 (463)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEECC-----EEEEEeE
Confidence            99999999999999999999999999999999999999999999999999999999999999998765     7999999


Q ss_pred             EEEEEEeecccccCccCCC
Q 006995          604 MNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       604 m~lslt~DHRvvDGa~aa~  622 (622)
                      |+||||||||||||+++|+
T Consensus       426 m~lsLs~DHRVIDGa~aA~  444 (463)
T PLN02226        426 MYVALTYDHRLIDGREAVY  444 (463)
T ss_pred             EEEeEecchhhhCcHHHHH
Confidence            9999999999999999874

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=100.00  E-value=6.7e-73  Score=616.61  Aligned_cols=384  Identities=39%  Similarity=0.598  Sum_probs=316.0

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~  292 (622)
                      .++.||++|++|.+|+|.+|+|++||.|+.||+|++||+||+.++++||.+|+|.++++++|+. |.+|++|+.|.+.++
T Consensus         3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~~G~~l~~i~~~~~   81 (411)
T PRK11856          3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VPVGSVIAVIEEEGE   81 (411)
T ss_pred             eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eCCCCEEEEEecCCC
Confidence            3689999999999999999999999999999999999999999999999999999999999999 999999999976543


Q ss_pred             -CcCCcCCCCCCCcccCC-CCCCC--CCCcccc---ccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHH
Q 006995          293 -DVGTVKNSVTSGAEVKG-EKETH--HDSKDVV---KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA  365 (622)
Q Consensus       293 -~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~  365 (622)
                       +.+.++.+....+.+.+ ....+  ...++..   ........++||+||+||+||||||++|+||||+|||+++||++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~~  161 (411)
T PRK11856         82 AEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEA  161 (411)
T ss_pred             CccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHHH
Confidence             22111110000000000 00000  0000000   00011123689999999999999999999999999999999999


Q ss_pred             HHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechH
Q 006995          366 AIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDP  445 (622)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~  445 (622)
                      |+.......  .+       +..+   + ...+.    ......+.+|++++||.|+++|.+||+++||||++.++|+|+
T Consensus       162 ~~~~~~~~~--~~-------~~~~---~-~~~~~----~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~  224 (411)
T PRK11856        162 AAAAAAPAA--AA-------AAAA---A-AAPPA----AAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTA  224 (411)
T ss_pred             HHhcccccC--CC-------CCCC---C-CCCCc----ccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHH
Confidence            975321100  00       0000   0 00000    001135678999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHH
Q 006995          446 LLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISA  525 (622)
Q Consensus       446 l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~e  525 (622)
                      |+++|++++.. +.++||++||+||+++||++||+||++|+++.  +++|+++|||+||++++||++|+|+++++++|.+
T Consensus       225 l~~~~k~~~~~-~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~--i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~e  301 (411)
T PRK11856        225 LLALRKQLKAI-GVKLTVTDFLIKAVALALKKFPELNASWDDDA--IVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFE  301 (411)
T ss_pred             HHHHHHHHHhh-ccCccHHHHHHHHHHHHHHhCcHhheEEeCCE--EEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHH
Confidence            99999999643 47999999999999999999999999998865  9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEE
Q 006995          526 ISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMN  605 (622)
Q Consensus       526 ia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~  605 (622)
                      |+++++++++++|+|+|+++|++||||||||+||||..+|+||||+||+|||++|++.++|++.+|     +++++.+|+
T Consensus       302 i~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g-----~~~~~~~m~  376 (411)
T PRK11856        302 LAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDG-----EIVVRKVMP  376 (411)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECC-----EEEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999887644     799999999


Q ss_pred             EEEEeecccccCccCCC
Q 006995          606 LTLSADHRVFEGKVGGT  622 (622)
Q Consensus       606 lslt~DHRvvDGa~aa~  622 (622)
                      |||+||||||||+++|+
T Consensus       377 lslt~DHRviDG~~aa~  393 (411)
T PRK11856        377 LSLSFDHRVIDGADAAR  393 (411)
T ss_pred             EeEEeehhhcCcHHHHH
Confidence            99999999999999874

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=2.8e-73  Score=609.69  Aligned_cols=353  Identities=30%  Similarity=0.460  Sum_probs=288.8

Q ss_pred             CceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          211 PRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       211 ~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      ...++.||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|+.|.+.
T Consensus        43 ~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~-V~~G~~L~~I~~~  121 (418)
T PTZ00144         43 SIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT-VEVGAPLSEIDTG  121 (418)
T ss_pred             cceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCE-ecCCCEEEEEcCC
Confidence            347899999999999999999999999999999999999999999999999999999999999999 9999999999654


Q ss_pred             CCCcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcC
Q 006995          291 PGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG  370 (622)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~  370 (622)
                      +++.+. +.  ..+  . +..+. . ..+.      ......|.+++++.++++++..+..               .. .
T Consensus       122 ~~~~~~-~~--~~~--~-~~~~~-~-~~~~------~~~~~~p~~~~~a~~~~~a~p~vr~---------------~~-~  171 (418)
T PTZ00144        122 GAPPAA-AP--AAA--A-AAKAE-K-TTPE------KPKAAAPTPEPPAASKPTPPAAAKP---------------PE-P  171 (418)
T ss_pred             Cccccc-cc--ccc--C-CCCCc-c-CCCC------CCCCCCCccccccccccCCchhhhc---------------cc-c
Confidence            332110 00  000  0 00000 0 0000      0001235566666666666655520               00 0


Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHH
Q 006995          371 KVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR  450 (622)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~r  450 (622)
                        .+  ..           ...+   .+.  ... ....+.+|+++|||+||++|++||+++||||++.++|+|+|+++|
T Consensus       172 --~~--~~-----------~~~~---~~~--~~~-~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r  230 (418)
T PTZ00144        172 --AP--AA-----------KPPP---TPV--ARA-DPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELR  230 (418)
T ss_pred             --CC--CC-----------CCCC---CCc--ccc-CCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHH
Confidence              00  00           0000   000  000 001345799999999999999999999999999999999999999


Q ss_pred             HHHhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHH
Q 006995          451 KELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAI  526 (622)
Q Consensus       451 k~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~ei  526 (622)
                      ++++.    +.|.|+||++||+||+++||++||.+|++|+++.  |++++++||||||++++||++|||+++++++|.+|
T Consensus       231 ~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~--i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eI  308 (418)
T PTZ00144        231 KEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDE--IVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEI  308 (418)
T ss_pred             HHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCE--EEEecCCCEEEEEECCCCEEEccCCCcccCCHHHH
Confidence            99984    3488999999999999999999999999998764  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEE
Q 006995          527 SMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL  606 (622)
Q Consensus       527 a~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~l  606 (622)
                      ++++++|++++|+|+|+++|++||||||||+||||+++|+|||||||+||||+|++.++|++.+|     ++++|++|+|
T Consensus       309 a~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g-----~i~~r~~m~l  383 (418)
T PTZ00144        309 EKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGN-----EIVIRPIMYL  383 (418)
T ss_pred             HHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEECC-----EEEEEeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999998755     7999999999


Q ss_pred             EEEeecccccCccCCC
Q 006995          607 TLSADHRVFEGKVGGT  622 (622)
Q Consensus       607 slt~DHRvvDGa~aa~  622 (622)
                      ||+|||||+||++||+
T Consensus       384 sLs~DHRviDGa~AA~  399 (418)
T PTZ00144        384 ALTYDHRLIDGRDAVT  399 (418)
T ss_pred             EEecchhhhChHHHHH
Confidence            9999999999999874

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=100.00  E-value=6.8e-68  Score=559.67  Aligned_cols=279  Identities=34%  Similarity=0.499  Sum_probs=240.2

Q ss_pred             CccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 006995          328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSD  407 (622)
Q Consensus       328 ~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (622)
                      ..++||+||+||+|+||||++|+||||+|||+++||++|+.......  ..+   ++..  ....+  +.+ .+. ....
T Consensus        48 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~--~~~---~~~~--~~~~~--~~~-~~~-~~~~  116 (347)
T PRK14843         48 VVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIEND--SIK---SPAQ--IEKVE--EVP-DNV-TPYG  116 (347)
T ss_pred             cccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCc--ccc---CCCC--Ccccc--CCC-ccc-ccCC
Confidence            34689999999999999999999999999999999999974321000  000   0000  00000  000 000 0111


Q ss_pred             CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhccccce
Q 006995          408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANA  483 (622)
Q Consensus       408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~  483 (622)
                      ..+.+|+++|||.|+++|++||+++||||++.+||+|+|+++|++++.    +.|.|+||++||+||++.||++||.||+
T Consensus       117 ~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na  196 (347)
T PRK14843        117 EIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINA  196 (347)
T ss_pred             cceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeE
Confidence            245689999999999999999999999999999999999999999873    3478999999999999999999999999


Q ss_pred             eecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCcc
Q 006995          484 YWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVD  563 (622)
Q Consensus       484 ~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~  563 (622)
                      +|+++.+.|++|++|||||||++++||++|||||+++|||.+|++++++|.+++|+|+|+++||+||||||||+||||++
T Consensus       197 ~~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~  276 (347)
T PRK14843        197 SLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQ  276 (347)
T ss_pred             EEecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCccc
Confidence            99865445999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          564 QFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       564 ~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      +|+|||||||+||||+|++.++|++++|     +++++++|+||||||||||||++||+
T Consensus       277 ~~tpIInpPq~aIlgvG~i~~~pv~~~g-----~i~~r~~m~lsls~DHRviDGa~aa~  330 (347)
T PRK14843        277 SFGPIINQPNSAILGVSSTIEKPVVVNG-----EIVIRPIMSLGLTIDHRVVDGMAGAK  330 (347)
T ss_pred             ceeccccCCceEEEecCCcceeeEEECC-----eEEEEeEEEEEEecchhhhCcHHHHH
Confidence            9999999999999999999999988755     79999999999999999999999874

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=1.9e-67  Score=547.49  Aligned_cols=283  Identities=31%  Similarity=0.403  Sum_probs=240.2

Q ss_pred             ccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCC
Q 006995          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDS  408 (622)
Q Consensus       329 ~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (622)
                      .++||+||+||+|+||||++|+|||++|||+++||++|+........  ++... +.+.. ...+..+.+....  ....
T Consensus         2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~--~~~~~-~~~~~-~~~~~~~~~~~~~--~~~~   75 (306)
T PRK11857          2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPT--PAEAA-SVSSA-QQAAKTAAPAAAP--PKLE   75 (306)
T ss_pred             cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccC--Ccccc-ccccc-cccccccCCcccc--cCCC
Confidence            35899999999999999999999999999999999999743211000  00000 00000 0000000010000  1112


Q ss_pred             ceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhcccccee
Q 006995          409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAY  484 (622)
Q Consensus       409 ~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~  484 (622)
                      .+.+|+++||+.|+++|++|++++||||++.+||+|+|+++|+++|+    +.|.|+||++||+||+++||++||.+|++
T Consensus        76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~  155 (306)
T PRK11857         76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK  155 (306)
T ss_pred             ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence            35579999999999999999999999999999999999999999974    25889999999999999999999999999


Q ss_pred             ecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccc
Q 006995          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (622)
Q Consensus       485 ~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~  564 (622)
                      |+++.+.|+++++|||||||++++||++|||+|++++||.||++++++|.+++|+|+|+++|++||||||||+||||+.+
T Consensus       156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~  235 (306)
T PRK11857        156 YDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY  235 (306)
T ss_pred             EeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccc
Confidence            98754579999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       565 ~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      |+|||||||+||||+|++.++|++.+|     +++++++|+|||+||||||||++||+
T Consensus       236 ~tpiIn~pq~aILgvG~i~~~pvv~~g-----~i~~r~~m~lslt~DHRviDGa~aa~  288 (306)
T PRK11857        236 GVPVINYPELAIAGVGAIIDKAIVKNG-----QIVAGKVMHLTVAADHRWIDGATIGR  288 (306)
T ss_pred             eecccCCCccceeecccceEEeEEECC-----EEEEeeeeEEeEecchhhhCcHHHHH
Confidence            999999999999999999999988654     79999999999999999999999874

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=1.1e-66  Score=525.20  Aligned_cols=360  Identities=30%  Similarity=0.414  Sum_probs=282.1

Q ss_pred             ceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (622)
Q Consensus       212 ~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~  291 (622)
                      ..++..|-++++++||.|..|++++||+|++++.|++|||||.+++|.||.+|+|.++++++||+ |.+|+.|+.|....
T Consensus        72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~~g~~la~i~~ga  150 (457)
T KOG0559|consen   72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VTPGQKLAKISPGA  150 (457)
T ss_pred             eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-ccCCceeEEecCCC
Confidence            45678899999999999999999999999999999999999999999999999999999999999 99999999996532


Q ss_pred             CCcCCcCCCCCCCcccCCCCCCCC-CCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhcC
Q 006995          292 GDVGTVKNSVTSGAEVKGEKETHH-DSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG  370 (622)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~~  370 (622)
                      ...+..    +.+|..++++.+++ .+++.+.+. .......|.++                                  
T Consensus       151 Apa~~~----~~apa~~~pk~~~a~~a~p~~~s~-~~p~~~apv~e----------------------------------  191 (457)
T KOG0559|consen  151 APAKGG----ASAPAKAEPKTAPAAAAPPKPSSK-PPPKEAAPVAE----------------------------------  191 (457)
T ss_pred             CCcccc----ccCCCccCCCCCCCCCCCCCccCC-CCccccCCCCC----------------------------------
Confidence            211110    11121111111111 000100000 00000001000                                  


Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHH
Q 006995          371 KVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR  450 (622)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~r  450 (622)
                       .++.+.+..+..+....+...+... ++......+....+++|++||+.||.+|.+|.++...++.+.||||+.|+++|
T Consensus       192 -~p~~p~~~~P~~~~a~k~~v~~~~~-~p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mR  269 (457)
T KOG0559|consen  192 -SPPAPSSPEPVPASAKKPSVAQPKP-PPSEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMR  269 (457)
T ss_pred             -CCCCCCCCCCCCccccCccccCCCC-CcccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence             0000000000000000000000000 01011111234677999999999999999999999999999999999999999


Q ss_pred             HHHh----hhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHH
Q 006995          451 KELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAI  526 (622)
Q Consensus       451 k~~k----~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~ei  526 (622)
                      +++|    +++|+|+.|+.+|+||++.||++.|.+|+.|+++.  |+|+|+|||+|||++++||++|||||++.+++.||
T Consensus       270 k~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~--iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adI  347 (457)
T KOG0559|consen  270 KQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDD--IVYRDYVDISVAVATPKGLVVPVIRNAESMNFADI  347 (457)
T ss_pred             HHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCe--eEEeecceeEEEeecCCceeeeeecccccccHHHH
Confidence            9988    67999999999999999999999999999999986  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEE
Q 006995          527 SMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL  606 (622)
Q Consensus       527 a~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~l  606 (622)
                      -.+|..|..|||+|+|+.+||.||||||||-|.||..+.||||||||+||||+.+|.+||+++.|     ++++|++|+|
T Consensus       348 E~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G-----~Vv~RPMMYv  422 (457)
T KOG0559|consen  348 EKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGG-----QVVPRPMMYV  422 (457)
T ss_pred             HHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCC-----EeeeccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999988     9999999999


Q ss_pred             EEEeecccccCccC
Q 006995          607 TLSADHRVFEGKVG  620 (622)
Q Consensus       607 slt~DHRvvDGa~a  620 (622)
                      .||||||+|||.+|
T Consensus       423 ALTYDHRliDGREA  436 (457)
T KOG0559|consen  423 ALTYDHRLIDGREA  436 (457)
T ss_pred             EeeccccccccHHH
Confidence            99999999999876

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=100.00  E-value=6.3e-56  Score=445.93  Aligned_cols=209  Identities=48%  Similarity=0.745  Sum_probs=184.1

Q ss_pred             CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhh---CCCCccHHHHHHHHHHHHHhhcccccee
Q 006995          408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEK---HNTKVSVNDIVIKAVAVALKNVPEANAY  484 (622)
Q Consensus       408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~---~g~k~t~~~~iikAva~Al~~~P~lN~~  484 (622)
                      +++++|++++||+|+++|++|++++||+|++.+||+|+|+++|+++|+.   .+.++|+++|++||+++||++||+||++
T Consensus         3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~   82 (231)
T PF00198_consen    3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS   82 (231)
T ss_dssp             SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred             CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence            4788999999999999999999999999999999999999999999843   3569999999999999999999999999


Q ss_pred             ecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccc
Q 006995          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (622)
Q Consensus       485 ~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~  564 (622)
                      |+++. +|++++++||||||++++||++|||+|++++|+.||+++++++++++|+|+|+++|++||||||||+|+||+++
T Consensus        83 ~~~~~-~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~  161 (231)
T PF00198_consen   83 WDGDG-EIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVES  161 (231)
T ss_dssp             EETTS-EEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SC
T ss_pred             ccccc-ceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcce
Confidence            98874 79999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       565 ~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      |+|||||||+|||++|++.++|++.+|     +++++++|+|||||||||+||++||+
T Consensus       162 ~~pii~~pq~ail~vG~i~~~p~~~~~-----~~~~~~~~~lslt~DHRvidG~~aa~  214 (231)
T PF00198_consen  162 FTPIINPPQVAILGVGAIRDRPVVEDG-----EVVVRPVMNLSLTFDHRVIDGAEAAR  214 (231)
T ss_dssp             EE----TTSSEEEEEEEEEEEEEEETT-----CEEEEEEEEEEEEEETTTS-HHHHHH
T ss_pred             eEccCCcccceEEEecceEEEEEEEec-----cceeeEEEEeEEeccceEEcHHHHHH
Confidence            999999999999999999999998655     79999999999999999999999874

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=100.00  E-value=3.6e-47  Score=425.08  Aligned_cols=211  Identities=23%  Similarity=0.289  Sum_probs=195.0

Q ss_pred             ceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHh----hhCCCCccHHHHHHHHHHHHHhhcccccee
Q 006995          409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAY  484 (622)
Q Consensus       409 ~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k----~~~g~k~t~~~~iikAva~Al~~~P~lN~~  484 (622)
                      .+.+|+++++++|+++|..| .++|+++...+|+++.|+++|+.+|    +..|.|+||++||+||+++||++||.||++
T Consensus       115 ~~~~~LrG~a~aiAkNM~aS-L~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas  193 (1228)
T PRK12270        115 DEVTPLRGAAAAVAKNMDAS-LEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH  193 (1228)
T ss_pred             cceeecccHHHHHHHHHHhh-hccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence            45679999999999999999 5699999999999999999999997    457899999999999999999999999999


Q ss_pred             ec--CCCCeEEEcCCccEEEEEecC-----CCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeC
Q 006995          485 WD--VEKGEIVLCDAIDISIAVATE-----KGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNL  557 (622)
Q Consensus       485 ~~--~~~~~i~~~~~vnigiAV~~~-----~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNl  557 (622)
                      |+  ++++.|+++++|||||||+++     +||+||+||++++|+|.+|.+++.+|+.|+|+|||+++||+||||||||+
T Consensus       194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~  273 (1228)
T PRK12270        194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNP  273 (1228)
T ss_pred             eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecC
Confidence            98  444459999999999999999     68999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeecCCCceEEEEeccceeEEEEeeC---CCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          558 GMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIG---SDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       558 G~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g---~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      ||||+.+|+||||+||+||||+|++...+++...   .+|  ++.++++|+||+|||||||||+++|+
T Consensus       274 G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~--~i~i~kvMtLTlTyDHRVIdGA~sg~  339 (1228)
T PRK12270        274 GGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLA--ELGISKVMTLTSTYDHRIIQGAESGE  339 (1228)
T ss_pred             CcccccceeeeecCCceEEEeccccccCceecCccccccc--ccceeeeEEeeeeccceeeccHhHHH
Confidence            9999999999999999999999999976665432   222  69999999999999999999999874

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.95  E-value=1.7e-26  Score=263.51  Aligned_cols=180  Identities=22%  Similarity=0.305  Sum_probs=148.7

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      .+.|+||+||  |+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++||. |.+|++|+.|+.++
T Consensus         2 ~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~-V~~G~~l~~i~~~~   78 (633)
T PRK11854          2 AIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDK-VETGALIMIFESAD   78 (633)
T ss_pred             CceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCE-EeCCCEEEEEeccc
Confidence            4579999999  99999999999999999999999999999999999999999999999999999 99999999996542


Q ss_pred             cccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCe
Q 006995          166 DDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV  245 (622)
Q Consensus       166 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pa~~a~a~s~~~~~~~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~  245 (622)
                      ....    ..+     +. ..  ....+   .+ .+.    .......++.||++|  +.+|+|.+|+|++||.|++||+
T Consensus        79 ~~~~----~~~-----~~-~~--~~~~~---~~-~~~----~~~~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~  136 (633)
T PRK11854         79 GAAD----AAP-----AQ-AE--EKKEA---AP-AAA----PAAAAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQS  136 (633)
T ss_pred             cccc----ccc-----cc-cc--ccccc---cc-ccc----cccCCceEEecccCC--CCCceEeEEEeCCCCEECCCCE
Confidence            1100    000     00 00  00000   00 000    011234689999999  9999999999999999999999


Q ss_pred             eEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995          246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (622)
Q Consensus       246 l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~  291 (622)
                      |+++|+||+.++|.||++|+|.++++++|+. |..|++|+.|....
T Consensus       137 l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~~  181 (633)
T PRK11854        137 LITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VSTGSLIMVFEVAG  181 (633)
T ss_pred             eeeeehhhceeEEeCCCCEEEEEEEecCCCE-EcCCcEeeEEeccc
Confidence            9999999999999999999999999999999 99999999987543

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=99.85  E-value=1.5e-21  Score=206.23  Aligned_cols=94  Identities=61%  Similarity=1.002  Sum_probs=90.4

Q ss_pred             CCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995           83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus        83 ~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      ++.|+.|.||.|+++|+||+|++|.++|||.+++||+||||||||++|+++..++|+++||++++|..||+||++||+|.
T Consensus        35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             cCCccccccccccc
Q 006995          163 EDADDIQHIPATIA  176 (622)
Q Consensus       163 ~~~~~~~~~~~~~~  176 (622)
                      +++++.++++.+..
T Consensus       115 e~e~di~~~k~~k~  128 (470)
T KOG0557|consen  115 EDEDDIAAFKLPKD  128 (470)
T ss_pred             cccccHHHhhcccc
Confidence            99999888877755

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.82  E-value=4.1e-20  Score=200.21  Aligned_cols=82  Identities=50%  Similarity=0.763  Sum_probs=78.7

Q ss_pred             cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      |.++|+||+||++|+||+|++|+||+||+|++||+|+||||||+++||+||++|+|.+|++++||. |++|++|++|+++
T Consensus         1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~Vg~~I~~i~~~   79 (404)
T COG0508           1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPVGAVIARIEEE   79 (404)
T ss_pred             CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcCCCeEEEEecC
Confidence            457899999999999999999999999999999999999999999999999999999999999999 9999999999887


Q ss_pred             Ccc
Q 006995          165 ADD  167 (622)
Q Consensus       165 ~~~  167 (622)
                      +++
T Consensus        80 ~~~   82 (404)
T COG0508          80 GAD   82 (404)
T ss_pred             CCc
Confidence            664

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.78  E-value=1.7e-18  Score=188.17  Aligned_cols=77  Identities=29%  Similarity=0.557  Sum_probs=75.2

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      ++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||. |.+|++|++|+.+
T Consensus        92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~-V~vG~~L~~I~~~  168 (463)
T PLN02226         92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT-VEPGTKVAIISKS  168 (463)
T ss_pred             eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE-ecCCCEEEEeccC
Confidence            8999999999999999999999999999999999999999999999999999999999999999 9999999999643

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=99.74  E-value=2.3e-18  Score=175.43  Aligned_cols=81  Identities=36%  Similarity=0.617  Sum_probs=77.4

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus        84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      ...+++++|.|+|+|+||+|.+|++++||+|++|+.||+|||||.+++|.||.+|+|.++++++||+ |..|+.|+.|..
T Consensus        70 ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~~g~~la~i~~  148 (457)
T KOG0559|consen   70 TSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VTPGQKLAKISP  148 (457)
T ss_pred             cceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-ccCCceeEEecC
Confidence            3478999999999999999999999999999999999999999999999999999999999999999 999999999986


Q ss_pred             CC
Q 006995          164 DA  165 (622)
Q Consensus       164 ~~  165 (622)
                      .+
T Consensus       149 ga  150 (457)
T KOG0559|consen  149 GA  150 (457)
T ss_pred             CC
Confidence            43

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=99.73  E-value=1.8e-17  Score=183.61  Aligned_cols=92  Identities=61%  Similarity=1.044  Sum_probs=85.9

Q ss_pred             cccccccC-CCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC-cc
Q 006995           74 GVRHFSSS-ELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KD  151 (622)
Q Consensus        74 ~~r~f~~~-~~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~-~~  151 (622)
                      ..|.|++. .++.+++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.+|++++|+ . 
T Consensus        99 ~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~-  177 (539)
T PLN02744         99 SARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE-  177 (539)
T ss_pred             ccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc-
Confidence            46899876 77889999999999999999999999999999999999999999999999999999999999999996 7 


Q ss_pred             ccCCCeEEEEEcCCc
Q 006995          152 VPVGQPIAITVEDAD  166 (622)
Q Consensus       152 v~~G~~l~~i~~~~~  166 (622)
                      |++|++|++|.++++
T Consensus       178 v~vG~~ia~i~~~~~  192 (539)
T PLN02744        178 IKVGEVIAITVEEEE  192 (539)
T ss_pred             cCCCCEEEEEccCcc
Confidence            999999999865444

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.73  E-value=7.7e-18  Score=139.88  Aligned_cols=74  Identities=46%  Similarity=0.690  Sum_probs=72.1

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      .+|++|.+|..+++++|.+|+|++||.|++||+||+||+||+.++|+||++|+|+++++++||. |..|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence            4689999999999999999999999999999999999999999999999999999999999999 9999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.71  E-value=4.1e-17  Score=176.18  Aligned_cols=82  Identities=32%  Similarity=0.639  Sum_probs=77.7

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus        84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      ..+++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||. |.+|++|++|+.
T Consensus        42 ~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~-V~~G~~L~~I~~  120 (418)
T PTZ00144         42 FSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT-VEVGAPLSEIDT  120 (418)
T ss_pred             ccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCE-ecCCCEEEEEcC
Confidence            4558999999999999999999999999999999999999999999999999999999999999999 999999999975


Q ss_pred             CCc
Q 006995          164 DAD  166 (622)
Q Consensus       164 ~~~  166 (622)
                      .++
T Consensus       121 ~~~  123 (418)
T PTZ00144        121 GGA  123 (418)
T ss_pred             CCc
Confidence            443

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.69  E-value=9.1e-17  Score=174.36  Aligned_cols=81  Identities=36%  Similarity=0.588  Sum_probs=76.9

Q ss_pred             cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      |.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||. |.+|++|+.|+.+
T Consensus         1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~-V~~G~~l~~i~~~   79 (407)
T PRK05704          1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT-VTVGQVLGRIDEG   79 (407)
T ss_pred             CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence            346899999999999999999999999999999999999999999999999999999999999999 9999999999765


Q ss_pred             Cc
Q 006995          165 AD  166 (622)
Q Consensus       165 ~~  166 (622)
                      ++
T Consensus        80 ~~   81 (407)
T PRK05704         80 AA   81 (407)
T ss_pred             Cc
Confidence            43

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=99.66  E-value=1.5e-15  Score=150.32  Aligned_cols=173  Identities=17%  Similarity=0.193  Sum_probs=130.6

Q ss_pred             CCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCC
Q 006995          430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKG  509 (622)
Q Consensus       430 ~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~G  509 (622)
                      ..-|.++++.+||+|+|.++.|+.      +++|+..+++++++|++++|+|+.+++++ |++++|+.++.+.+|..+++
T Consensus        23 ~~~p~~svT~~lDvT~l~~~~K~~------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~-g~v~~~d~i~ps~Tv~~~~~   95 (206)
T PF00302_consen   23 FDNPYFSVTVNLDVTNLYKYAKEK------GLSFFPAYLYAIMKAANEIPEFRYRIVDD-GEVVYYDRIDPSYTVFHKDD   95 (206)
T ss_dssp             TSBEEEEEEEEEE-HHHHHHHHHT------T--HHHHHHHHHHHHHTTSGGGCEEEETT-SCEEEESS-EEEEEEEETTT
T ss_pred             CCCceEecceeEEhHHHHHHHHHc------CCCcHHHHHHHHHHHHhcCHHHheeeeCC-CcEEEECCcceeeeEEeCCC
Confidence            477999999999999999998877      78999999999999999999999999987 46999999999999986653


Q ss_pred             eEEeeeccCCCCCHHHHHHHHHHHHHHHHcC-CCCCCc-cCCCcEEEEeCCCCCccceeeecCCC-c--eEEEEecccee
Q 006995          510 LMTPIVRNADQKSISAISMEVKELAEKARAG-KLAPHE-FQGGTFSISNLGMFPVDQFCAIINPP-Q--AGILAVGRGNQ  584 (622)
Q Consensus       510 L~~pvI~~a~~~sl~eia~~~~~l~~~ar~g-~l~~~d-~~ggtftISNlG~~G~~~~tpii~~p-q--~ail~vG~~~~  584 (622)
                      -..-.+.-....++.++.++..+.++++++. .+.++. .....|.+|++-++.-++++.-++.+ .  .-++..|+..+
T Consensus        96 ~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK~~~  175 (206)
T PF00302_consen   96 ETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGKYFE  175 (206)
T ss_dssp             TEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE--EE
T ss_pred             CeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeeeeEe
Confidence            3555666678889999999999999998774 455443 44568999999999988886644432 2  34788888764


Q ss_pred             EEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          585 VVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       585 ~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      +       +|      |..|||++.+.|.++||.|+++
T Consensus       176 ~-------~g------r~~mPvsiqvhHa~~DG~Hv~~  200 (206)
T PF00302_consen  176 E-------NG------RLLMPVSIQVHHALVDGYHVGQ  200 (206)
T ss_dssp             E-------TT------EEEEEEEEEEETTT--HHHHHH
T ss_pred             E-------CC------EEEEEEEEEEecccccHHHHHH
Confidence            2       23      6789999999999999998764

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=99.66  E-value=3.4e-16  Score=169.60  Aligned_cols=78  Identities=37%  Similarity=0.632  Sum_probs=74.9

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      ++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+. |++|++|++|+.++
T Consensus         1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~-v~vG~~l~~i~~~~   78 (403)
T TIGR01347         1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT-VESGQVLAILEEGN   78 (403)
T ss_pred             CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCC
Confidence            3689999999999999999999999999999999999999999999999999999999999999 99999999997543

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.65  E-value=4.2e-16  Score=166.85  Aligned_cols=78  Identities=37%  Similarity=0.632  Sum_probs=75.5

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      .++|+||++|++|+||+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+. |.+|++|+.|++.
T Consensus         2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~-v~~g~~l~~i~~~   79 (371)
T PRK14875          2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET-LPVGALLAVVADA   79 (371)
T ss_pred             ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence            47899999999999999999999999999999999999999999999999999999999999999 9999999999654

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.65  E-value=3e-16  Score=130.32  Aligned_cols=74  Identities=42%  Similarity=0.672  Sum_probs=71.6

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .++.+|.+|..+.++++.+|++++||.|++||+||+||+||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence            3689999999999999999999999999999999999999999999999999999999999999 9999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK06748 hypothetical protein; Validated

Probab=99.63  E-value=1.2e-15  Score=128.14  Aligned_cols=63  Identities=24%  Similarity=0.286  Sum_probs=60.8

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEe-cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIET-DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vet-dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      -|+|.+|+|++||.|++||+|++||| ||++++|+||.+|+|.++++++||. |++|++|+.|++
T Consensus        12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~vG~~la~I~~   75 (83)
T PRK06748         12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IADQKLLITVRD   75 (83)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEEC
Confidence            48999999999999999999999999 9999999999999999999999999 999999999953

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.61  E-value=1.8e-15  Score=162.07  Aligned_cols=119  Identities=29%  Similarity=0.417  Sum_probs=102.0

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~  292 (622)
                      .++.||++|++|++|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |++|++|+.+.....
T Consensus         3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~-v~~g~~l~~i~~~~~   81 (371)
T PRK14875          3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET-LPVGALLAVVADAEV   81 (371)
T ss_pred             eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCE-eCCCCEEEEEecCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999 999999999953211


Q ss_pred             CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhh
Q 006995          293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDV  363 (622)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV  363 (622)
                      ..                              ......++|++++++++ ++++....+++..+.+...++
T Consensus        82 ~~------------------------------~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i  121 (371)
T PRK14875         82 SD------------------------------AEIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGGRTV  121 (371)
T ss_pred             Cc------------------------------ccccccccchhhhcccc-ccchhhccCCCCcceEcCcEE
Confidence            00                              00112468899999988 999999999888877765555

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=99.61  E-value=1.4e-14  Score=144.34  Aligned_cols=182  Identities=14%  Similarity=0.092  Sum_probs=141.5

Q ss_pred             hHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCC
Q 006995          418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDA  497 (622)
Q Consensus       418 rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~  497 (622)
                      ||.--......  --|+|.++.+||+|.|+++.|+.      +++|+..+++++++|++++|+|+.++.+++  ++.|+.
T Consensus        18 RkehF~~f~~~--~~~~fsiT~~iDiT~l~~~~K~~------~~~fy~~~ly~v~kavN~~~eFR~r~~~~~--v~~~D~   87 (219)
T PRK13757         18 RKEHFEAFQSV--AQCTYNQTVQLDITAFLKTVKKN------KHKFYPAFIHILARLMNAHPEFRMAMKDGE--LVIWDS   87 (219)
T ss_pred             cHHHHHHHhcC--CCCceEEEEEEEHHHHHHHHHHc------CCChHHHHHHHHHHHHhcCHhHheEEECCe--EEEEeE
Confidence            44444443332  23459999999999999998877      789999999999999999999999997654  999999


Q ss_pred             ccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCC-CCCCccCCCcEEEEeCCCCCccceeeecC-CCce-
Q 006995          498 IDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHEFQGGTFSISNLGMFPVDQFCAIIN-PPQA-  574 (622)
Q Consensus       498 vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~-l~~~d~~ggtftISNlG~~G~~~~tpii~-~pq~-  574 (622)
                      ++.+.+|..+++-+.-.+.-...-++.++.+.....++++++.. +-+.....-.|.||++-++.-++|+.-++ ...- 
T Consensus        88 i~ps~Ti~~~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~  167 (219)
T PRK13757         88 VHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFF  167 (219)
T ss_pred             EeeeEEEEeCCCceEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCc
Confidence            99999999777657778888889999999999999999998864 54544455678888887777666654333 2222 


Q ss_pred             -EEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          575 -GILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       575 -ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                       -++..|+..++       +|      |.+||||+.+.|.+|||.|+++
T Consensus       168 ~P~it~GKy~~~-------~g------r~~mPvSvqvHHa~~DG~Hv~~  203 (219)
T PRK13757        168 APVFTMGKYYTQ-------GD------KVLMPLAIQVHHAVCDGFHVGR  203 (219)
T ss_pred             CcEEEeeceEEE-------CC------EEEEEEEEEEehhccchHHHHH
Confidence             36777776531       22      5689999999999999999864

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.60  E-value=2.4e-15  Score=170.53  Aligned_cols=82  Identities=34%  Similarity=0.526  Sum_probs=77.6

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus        84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      .+.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+. |++|++|++|++
T Consensus       133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~-v~vG~~l~~i~~  211 (590)
T TIGR02927       133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDT-VDVGAEIAKIGD  211 (590)
T ss_pred             CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCE-ecCCCEEEEEec
Confidence            3458999999999999999999999999999999999999999999999999999999999999999 999999999976


Q ss_pred             CCc
Q 006995          164 DAD  166 (622)
Q Consensus       164 ~~~  166 (622)
                      +++
T Consensus       212 ~~~  214 (590)
T TIGR02927       212 AGA  214 (590)
T ss_pred             CCC
Confidence            543

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.58  E-value=9.4e-15  Score=160.77  Aligned_cols=85  Identities=54%  Similarity=0.890  Sum_probs=77.7

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      .++|+||++|++|+||+|.+|+|++||.|++||+||+|||||++++|+|+.+|+|.++++++|+.+|++|++|+.|++++
T Consensus         2 ~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~   81 (464)
T PRK11892          2 AIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG   81 (464)
T ss_pred             CcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence            35899999999999999999999999999999999999999999999999999999999999963399999999997665


Q ss_pred             ccccc
Q 006995          166 DDIQH  170 (622)
Q Consensus       166 ~~~~~  170 (622)
                      ++..+
T Consensus        82 ~~~~~   86 (464)
T PRK11892         82 ESASD   86 (464)
T ss_pred             Ccccc
Confidence            54443

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.55  E-value=1.8e-14  Score=162.24  Aligned_cols=79  Identities=23%  Similarity=0.344  Sum_probs=75.6

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      .+.|+||++|+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|+.++
T Consensus       116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~  193 (546)
T TIGR01348       116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDS-VPTGDLILTLSVAG  193 (546)
T ss_pred             ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCE-ecCCCEEEEEecCC
Confidence            47999999999 99999999999999999999999999999999999999999999999999999 99999999997654


Q ss_pred             c
Q 006995          166 D  166 (622)
Q Consensus       166 ~  166 (622)
                      +
T Consensus       194 ~  194 (546)
T TIGR01348       194 S  194 (546)
T ss_pred             C
Confidence            3

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK06748 hypothetical protein; Validated

Probab=99.55  E-value=1.5e-14  Score=121.56  Aligned_cols=63  Identities=22%  Similarity=0.278  Sum_probs=60.5

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEec-ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIET-DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vet-dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      .|+|.+|+|++||+|++||+|++||| ||++++|+||.+|+|.+|++++|+. |++|++|++|.+
T Consensus        12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~vG~~la~I~~   75 (83)
T PRK06748         12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IADQKLLITVRD   75 (83)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEEC
Confidence            37999999999999999999999999 9999999999999999999999999 999999999953

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=99.53  E-value=1.7e-14  Score=157.19  Aligned_cols=77  Identities=30%  Similarity=0.486  Sum_probs=73.5

Q ss_pred             EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995           89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (622)
Q Consensus        89 ~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~  166 (622)
                      |+||+||++|+||+|++|+|++||.|++||+||+||+||+.++++|+++|+|.++++++|+. |.+|++|+.|+.+++
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~   77 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVEDS   77 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEeccCC
Confidence            57999999999999999999999999999999999999999999999999999999999999 999999999975443

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.52  E-value=5.2e-14  Score=115.93  Aligned_cols=62  Identities=26%  Similarity=0.353  Sum_probs=60.1

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      -|+|.+|+|++||+|++||+||+||+||+.++|.||.+|+|.++++++|+. |..|++|+.|+
T Consensus        10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~~G~~l~~i~   71 (71)
T PRK05889         10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQAGDLIAVIS   71 (71)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-ECCCCEEEEEC
Confidence            499999999999999999999999999999999999999999999999999 99999999884

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=99.50  E-value=1.5e-13  Score=150.50  Aligned_cols=80  Identities=45%  Similarity=0.666  Sum_probs=76.4

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      ...++||++|++|+||+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. |.+|++|+.|.+.+
T Consensus         2 ~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~~G~~l~~i~~~~   80 (411)
T PRK11856          2 MFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VPVGSVIAVIEEEG   80 (411)
T ss_pred             CeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eCCCCEEEEEecCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999 99999999997655


Q ss_pred             c
Q 006995          166 D  166 (622)
Q Consensus       166 ~  166 (622)
                      +
T Consensus        81 ~   81 (411)
T PRK11856         81 E   81 (411)
T ss_pred             C
Confidence            4

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.49  E-value=8.3e-13  Score=145.50  Aligned_cols=82  Identities=56%  Similarity=0.918  Sum_probs=75.8

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~  292 (622)
                      .++.||++|++|++|+|.+|+|++||.|++||+|++|||||++++++|+.+|+|.+|++++|+.+|++|++|++|.++++
T Consensus         3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~   82 (464)
T PRK11892          3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE   82 (464)
T ss_pred             cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence            37899999999999999999999999999999999999999999999999999999999999634999999999976554


Q ss_pred             Cc
Q 006995          293 DV  294 (622)
Q Consensus       293 ~~  294 (622)
                      +.
T Consensus        83 ~~   84 (464)
T PRK11892         83 SA   84 (464)
T ss_pred             cc
Confidence            33

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.48  E-value=1.4e-13  Score=155.71  Aligned_cols=79  Identities=32%  Similarity=0.464  Sum_probs=75.7

Q ss_pred             cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      ...+|+||+||+ |+||+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. |.+|++|+.|.+.
T Consensus       118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~-v~~G~~l~~i~~~  195 (547)
T PRK11855        118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDK-VSVGSLLVVIEVA  195 (547)
T ss_pred             CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCE-ecCCCEEEEEecC
Confidence            358999999999 99999999999999999999999999999999999999999999999999999 9999999999765


Q ss_pred             C
Q 006995          165 A  165 (622)
Q Consensus       165 ~  165 (622)
                      +
T Consensus       196 ~  196 (547)
T PRK11855        196 A  196 (547)
T ss_pred             C
Confidence            3

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.46  E-value=2.6e-13  Score=112.12  Aligned_cols=72  Identities=40%  Similarity=0.679  Sum_probs=69.6

Q ss_pred             EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995           89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus        89 ~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      |.+|+++.++.+|++.+|++++||.|++||+|+++|+||+.++|.||++|+|.+++.+.|+. +..|+.|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEC
Confidence            67899999999999999999999999999999999999999999999999999999999999 9999999864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.45  E-value=1.9e-13  Score=149.90  Aligned_cols=77  Identities=70%  Similarity=1.152  Sum_probs=73.7

Q ss_pred             EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        89 ~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      |+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+..|++|++|++|++++
T Consensus         2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~   78 (435)
T TIGR01349         2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEK   78 (435)
T ss_pred             cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence            78999999999999999999999999999999999999999999999999999999999986699999999997544

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.41  E-value=8.8e-13  Score=108.26  Aligned_cols=61  Identities=31%  Similarity=0.336  Sum_probs=59.7

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      |+|.+|++++||+|++||+|++||+||+.+++.++.+|+|.++++++||. |..|++|+.|+
T Consensus        10 G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~~g~~l~~ie   70 (70)
T PRK08225         10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VNEGDVLLEIE   70 (70)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-ECCCCEEEEEC
Confidence            89999999999999999999999999999999999999999999999999 99999999884

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.39  E-value=1.4e-12  Score=121.65  Aligned_cols=70  Identities=27%  Similarity=0.433  Sum_probs=63.7

Q ss_pred             ceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       212 ~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      ...+..|..      |++.+.+|++||+|++||+||.||.||+.++|+||.+|+|.+|++++|+. |+.||+|+.|.
T Consensus        70 ~~~V~SPm~------Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~-Ve~G~~L~~I~  139 (140)
T COG0511          70 GTQVTSPMV------GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP-VEYGDPLAVIE  139 (140)
T ss_pred             CceEecCcc------eEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc-cCCCCEEEEec
Confidence            345555543      68999999999999999999999999999999999999999999999999 99999999984

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.38  E-value=1.2e-12  Score=122.11  Aligned_cols=62  Identities=32%  Similarity=0.474  Sum_probs=60.3

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      -|++.+.||++||+|++||+||.||.||+..+|.||.+|+|++|++++||. |..||+|+.|.
T Consensus        78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~-Ve~G~~L~~I~  139 (140)
T COG0511          78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP-VEYGDPLAVIE  139 (140)
T ss_pred             ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc-cCCCCEEEEec
Confidence            489999999999999999999999999999999999999999999999999 99999999984

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.36  E-value=2.4e-12  Score=106.06  Aligned_cols=61  Identities=25%  Similarity=0.358  Sum_probs=59.3

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .|+|.+|++++||+|++||+|+++|+||+.++|.||.+|+|.++++++|+. |+.|++|+.|
T Consensus        10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~~G~~l~~i   70 (71)
T PRK05889         10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQAGDLIAVI   70 (71)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-ECCCCEEEEE
Confidence            389999999999999999999999999999999999999999999999999 9999999987

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.30  E-value=1.7e-11  Score=112.18  Aligned_cols=61  Identities=21%  Similarity=0.234  Sum_probs=59.2

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus        69 ~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I  129 (130)
T PRK06549         69 PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VNPGDGLITI  129 (130)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEe
Confidence            479999999999999999999999999999999999999999999999999 9999999986

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.30  E-value=8.5e-12  Score=114.07  Aligned_cols=61  Identities=25%  Similarity=0.252  Sum_probs=59.6

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      .|+|.+|++++||.|++||+|+++|+||+..+|.||++|+|.++++++||. |..|++|+.|
T Consensus        69 ~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I  129 (130)
T PRK06549         69 PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VNPGDGLITI  129 (130)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEe
Confidence            589999999999999999999999999999999999999999999999999 9999999987

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.29  E-value=1.1e-11  Score=102.38  Aligned_cols=72  Identities=38%  Similarity=0.652  Sum_probs=68.6

Q ss_pred             eecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       215 ~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      +.+|+++..+.+|++.+|++++||+|++||+|+.+|++|+..+|.||.+|+|.+++++.|+. +..|+.|+.+
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEC
Confidence            56799999999999999999999999999999999999999999999999999999999998 9999999864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.27  E-value=6.9e-11  Score=111.34  Aligned_cols=61  Identities=31%  Similarity=0.473  Sum_probs=59.1

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .|+|.+|++++||.|++||+|+++|+||+.++|.|+.+|+|.++++++|+. |..|++|+.|
T Consensus        92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~Gq~L~~I  152 (153)
T PRK05641         92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VDTGQPLIEL  152 (153)
T ss_pred             CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-ECCCCEEEEe
Confidence            369999999999999999999999999999999999999999999999999 9999999987

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.25  E-value=2e-11  Score=114.93  Aligned_cols=61  Identities=33%  Similarity=0.514  Sum_probs=59.5

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      .|+|.+|+|++||+|++||+|+++|+||+..+|.|+++|+|.++++++||. |..|++|+.|
T Consensus        92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~Gq~L~~I  152 (153)
T PRK05641         92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VDTGQPLIEL  152 (153)
T ss_pred             CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-ECCCCEEEEe
Confidence            489999999999999999999999999999999999999999999999999 9999999987

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.24  E-value=2.3e-11  Score=99.78  Aligned_cols=61  Identities=28%  Similarity=0.331  Sum_probs=59.3

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .|+|.+|++++||+|++||+|+++|+||+.+++.++.+|+|.++++++|+. |..|++|+.|
T Consensus         9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~~g~~l~~i   69 (70)
T PRK08225          9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VNEGDVLLEI   69 (70)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-ECCCCEEEEE
Confidence            389999999999999999999999999999999999999999999999999 9999999987

>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit

Probab=99.24  E-value=4.9e-12  Score=91.03  Aligned_cols=37  Identities=46%  Similarity=0.676  Sum_probs=33.2

Q ss_pred             ccCChhHHhHHHHcCCCcccccccCCCCeeechhhHH
Q 006995          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA  365 (622)
Q Consensus       329 ~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~  365 (622)
                      +.+||+||+||+|+|||+++|+|||++|||+++||++
T Consensus         3 i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a   39 (39)
T PF02817_consen    3 IKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA   39 (39)
T ss_dssp             CCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred             cccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence            4689999999999999999999999999999999985

Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....

>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]

Probab=99.24  E-value=1.3e-10  Score=111.36  Aligned_cols=169  Identities=16%  Similarity=0.123  Sum_probs=132.0

Q ss_pred             CCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCC
Q 006995          430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKG  509 (622)
Q Consensus       430 ~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~G  509 (622)
                      ...||+.++.+.|++.+..+.|+.      +++|+..+++|+.+++++|++++.++.++.  .++++.+++.++|.++++
T Consensus        26 ~~~p~y~i~~~LDvtn~~~~vk~~------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~--~~~~d~v~p~~tv~~~~~   97 (219)
T COG4845          26 LQYPHYDINLQLDVTNFYGYVKEN------GLSFFPALLYAVTRCANRHQEFRLRIQNGQ--LGYWDNVPPMYTVFHGET   97 (219)
T ss_pred             cccceEeeeeeeehhHHHHHHHHc------CCcchHHHHHHHHHHhcccHHhHhhhcCCe--eEEeecCCcceEEEcCCC
Confidence            578999999999999999998877      789999999999999999999999999865  999999999999999887


Q ss_pred             eEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcE-EEEeCCCCCccceeeecCCCc------eEEEEeccc
Q 006995          510 LMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTF-SISNLGMFPVDQFCAIINPPQ------AGILAVGRG  582 (622)
Q Consensus       510 L~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtf-tISNlG~~G~~~~tpii~~pq------~ail~vG~~  582 (622)
                      -+.-++.-....++.++++....-+++++++.--..  .+.++ -+-++|.+.+..|+.+-.+=+      .-|+.-|+-
T Consensus        98 e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~--k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~Grf  175 (219)
T COG4845          98 ETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERA--KDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYAGRF  175 (219)
T ss_pred             cEEEEEeccccccHHHHHHHHHHHHHHhccCccccc--CCCCcceeEEeccccccceeeeeeeccCCccccceeEeecce
Confidence            677788878999999999999998999888763211  22222 344455556666666532211      124555554


Q ss_pred             eeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCC
Q 006995          583 NQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG  621 (622)
Q Consensus       583 ~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa  621 (622)
                      .       ++||      .-.|||++.+.|..|||-+.+
T Consensus       176 ~-------~~~G------kl~lPlavq~hHA~vDG~Hi~  201 (219)
T COG4845         176 Y-------EEDG------KLTLPLAVQAHHANVDGFHIG  201 (219)
T ss_pred             e-------ccCC------eEEEeEEEEecccccchhhHH
Confidence            3       2555      246999999999999998865

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.21  E-value=6.6e-11  Score=118.45  Aligned_cols=56  Identities=34%  Similarity=0.507  Sum_probs=54.7

Q ss_pred             EeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       231 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .|+|++||.|++||+|++||+||+.++|+++.+|+|.+|++++|+. |.+|++|+.|
T Consensus       217 ~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~-V~vGqpL~~I  272 (274)
T PLN02983        217 PPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKP-VSVDTPLFVI  272 (274)
T ss_pred             cceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence            3999999999999999999999999999999999999999999999 9999999988

>PRK07051 hypothetical protein; Validated

Probab=99.21  E-value=5.9e-11  Score=100.08  Aligned_cols=61  Identities=30%  Similarity=0.379  Sum_probs=58.8

Q ss_pred             EEEEE-------EEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       101 g~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      |++.+       |+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|+
T Consensus        12 g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~~G~~l~~i~   79 (80)
T PRK07051         12 GTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VEAGQVLARIE   79 (80)
T ss_pred             eEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence            67777       999999999999999999999999999999999999999999999 99999999985

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.19  E-value=1e-10  Score=94.22  Aligned_cols=62  Identities=35%  Similarity=0.498  Sum_probs=59.5

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      -.|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.+++++.|+. |..|++|+.|
T Consensus         6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-V~~G~~l~~i   67 (67)
T cd06850           6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVVI   67 (67)
T ss_pred             ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence            4699999999999999999999999999999999999999999999999999 9999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.17  E-value=6e-11  Score=118.74  Aligned_cols=62  Identities=31%  Similarity=0.489  Sum_probs=59.0

Q ss_pred             eEEEEE-------EEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          100 QGNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       100 eg~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      .|++.+       |+|++||.|++||+||+||+||+.++|+++++|+|.++++++||. |.+|++|+.|+
T Consensus       205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~-V~vGqpL~~IE  273 (274)
T PLN02983        205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKP-VSVDTPLFVIE  273 (274)
T ss_pred             CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCE-eCCCCEEEEec
Confidence            367777       999999999999999999999999999999999999999999999 99999999984

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.16  E-value=7.2e-11  Score=111.99  Aligned_cols=60  Identities=33%  Similarity=0.515  Sum_probs=58.0

Q ss_pred             EEEEE-------EEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       101 g~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      |++.+       |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|
T Consensus        89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~-V~~Gq~L~~i  155 (156)
T TIGR00531        89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP-VEYGQPLIVI  155 (156)
T ss_pred             EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE-ECCCCEEEEE
Confidence            77775       999999999999999999999999999999999999999999999 9999999987

The gene name is accB or fabE.

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=99.11  E-value=6.6e-11  Score=120.81  Aligned_cols=79  Identities=23%  Similarity=0.430  Sum_probs=74.7

Q ss_pred             CceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          211 PRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       211 ~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      ....+++-++|+++.|.++.+|+|||||+|+..|.||||++||++++|++.++|+|++|+...++. ..||++|..+..+
T Consensus        63 gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddi-a~VGk~Lvd~eve  141 (474)
T KOG0558|consen   63 GVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDI-AKVGKPLVDLEVE  141 (474)
T ss_pred             ceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhh-hHhCcceeeeeec
Confidence            357889999999999999999999999999999999999999999999999999999999999999 9999999877543

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.11  E-value=3.1e-10  Score=107.66  Aligned_cols=74  Identities=27%  Similarity=0.400  Sum_probs=61.7

Q ss_pred             eeeecCCCCCCccc-ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          213 VVLEMPALSPTMNQ-GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       213 ~~~~~P~l~~~~~e-g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      ..+..|..|-.+.. ..-..|+|++||.|++||+||.||+||+.++|+|+.+|+|.+|++++|+. |..|++|+.|
T Consensus        81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~-V~~Gq~L~~i  155 (156)
T TIGR00531        81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP-VEYGQPLIVI  155 (156)
T ss_pred             CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE-ECCCCEEEEE
Confidence            34666655522211 12234999999999999999999999999999999999999999999999 9999999987

The gene name is accB or fabE.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.11  E-value=1.8e-10  Score=109.19  Aligned_cols=60  Identities=33%  Similarity=0.525  Sum_probs=57.6

Q ss_pred             EEEEE-------EEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       101 g~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      |++..       |||++||.|++||+||.||+||+..+|+|+++|+|.+++++.|+. |..|++|+.|
T Consensus        88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~-V~~Gq~L~~i  154 (155)
T PRK06302         88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP-VEFGQPLFVI  154 (155)
T ss_pred             EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE-eCCCCEEEEe
Confidence            66765       999999999999999999999999999999999999999999999 9999999987

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=99.11  E-value=7.5e-10  Score=89.30  Aligned_cols=73  Identities=56%  Similarity=0.878  Sum_probs=70.2

Q ss_pred             EEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995           88 VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus        88 ~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      ++.+|+++.+..+|+|.+|+++.|+.|..|++|+.++++|+...+.++.+|++.+.++.+|+. +..|++|+.|
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~-v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT-VPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE-eCCCCEEEEC
Confidence            478999999999999999999999999999999999999999999999999999999999999 9999999874

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK07051 hypothetical protein; Validated

Probab=99.07  E-value=6.1e-10  Score=93.93  Aligned_cols=57  Identities=30%  Similarity=0.345  Sum_probs=55.1

Q ss_pred             EeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       231 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      .|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.+.
T Consensus        23 ~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~~G~~l~~i~   79 (80)
T PRK07051         23 PPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VEAGQVLARIE   79 (80)
T ss_pred             CCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence            3999999999999999999999999999999999999999999999 99999999984

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.04  E-value=5.7e-10  Score=126.05  Aligned_cols=63  Identities=29%  Similarity=0.413  Sum_probs=61.0

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      .|+|++|+|++||.|++||+|++||+||++.+|+||++|+|.++++++|+. |.+|++|+.|++
T Consensus       533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~~G~~L~~I~~  595 (596)
T PRK14042        533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VTPGQVLIRVEV  595 (596)
T ss_pred             ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-ECCCCEEEEEeC
Confidence            399999999999999999999999999999999999999999999999999 999999999963

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=98.99  E-value=1.8e-09  Score=102.49  Aligned_cols=74  Identities=27%  Similarity=0.390  Sum_probs=62.9

Q ss_pred             eeeecCCCCCCccc-ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          213 VVLEMPALSPTMNQ-GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       213 ~~~~~P~l~~~~~e-g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      ..+..|..|-.+.. ..-..|+|++||.|++||+||.||+||+.++|+|+.+|+|.++++++|+. |..|++|+.|
T Consensus        80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~-V~~Gq~L~~i  154 (155)
T PRK06302         80 HVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP-VEFGQPLFVI  154 (155)
T ss_pred             CEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE-eCCCCEEEEe
Confidence            45666766533221 22335999999999999999999999999999999999999999999999 9999999987

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=98.97  E-value=1.9e-09  Score=86.76  Aligned_cols=61  Identities=31%  Similarity=0.474  Sum_probs=58.4

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .|.+.+|++++||.|++||+|++++++|...+|.||.+|+|.+++++.|+. |..|++|+.|
T Consensus         7 ~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-V~~G~~l~~i   67 (67)
T cd06850           7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVVI   67 (67)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence            588999999999999999999999999999999999999999999999999 9999999864

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=98.94  E-value=9e-09  Score=116.41  Aligned_cols=62  Identities=29%  Similarity=0.440  Sum_probs=60.1

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      .|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |.+|++|+.|.
T Consensus       533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~~G~~L~~I~  594 (596)
T PRK14042        533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VTPGQVLIRVE  594 (596)
T ss_pred             ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-ECCCCEEEEEe
Confidence            379999999999999999999999999999999999999999999999999 99999999984

>TIGR02712 urea_carbox urea carboxylase

Probab=98.94  E-value=1.7e-09  Score=131.79  Aligned_cols=62  Identities=29%  Similarity=0.374  Sum_probs=60.3

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      .|+|.+|+|++||+|++||+||+||+||++++|+||.+|+|+++++++||. |.+|++|+.|+
T Consensus      1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VDAGDIVAVLE 1201 (1201)
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eCCCCEEEEeC
Confidence            499999999999999999999999999999999999999999999999999 99999999874

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.85  E-value=4.2e-09  Score=119.35  Aligned_cols=58  Identities=33%  Similarity=0.512  Sum_probs=56.3

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI  158 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l  158 (622)
                      -|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++||. |.+|++|
T Consensus       525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~~G~~l  582 (582)
T TIGR01108       525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VSVGQVL  582 (582)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCCC
Confidence            489999999999999999999999999999999999999999999999999 9999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.85  E-value=6.1e-09  Score=118.19  Aligned_cols=61  Identities=33%  Similarity=0.450  Sum_probs=59.7

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      .|+|++|+|++||.|++||+||+||+||+..+|.||.+|+|+++++++|+. |..|++|+.|
T Consensus       532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I  592 (593)
T PRK14040        532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VAVGDTLLTL  592 (593)
T ss_pred             cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence            489999999999999999999999999999999999999999999999999 9999999987

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=98.81  E-value=2.7e-08  Score=80.06  Aligned_cols=73  Identities=51%  Similarity=0.807  Sum_probs=69.2

Q ss_pred             eeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       214 ~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      ++.+|.++.....|++..|+++.|+.+..|++++.++++|+...+.++.+|++.+.++.+|+. +..|++|+.+
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~-v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT-VPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE-eCCCCEEEEC
Confidence            467899999999999999999999999999999999999999999999999999999999999 9999999864

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.79  E-value=1e-08  Score=124.01  Aligned_cols=67  Identities=19%  Similarity=0.367  Sum_probs=62.0

Q ss_pred             CCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995           94 LSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus        94 ~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      ++..| .|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|+++++++||. |.+|++|+.|+
T Consensus      1077 I~a~~-~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1077 VGAPM-PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-IDAKDLLLVLE 1143 (1143)
T ss_pred             eecCC-CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEeC
Confidence            33443 499999999999999999999999999999999999999999999999999 99999999873

This enzyme plays a role in gluconeogensis but not glycolysis.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.79  E-value=3.2e-08  Score=119.80  Aligned_cols=60  Identities=17%  Similarity=0.362  Sum_probs=58.9

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      |+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |++|++|+.|
T Consensus      1083 G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i 1142 (1143)
T TIGR01235      1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-IDAKDLLLVL 1142 (1143)
T ss_pred             cEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence            89999999999999999999999999999999999999999999999999 9999999987

This enzyme plays a role in gluconeogensis but not glycolysis.

>TIGR02712 urea_carbox urea carboxylase

Probab=98.73  E-value=1.7e-08  Score=123.26  Aligned_cols=61  Identities=28%  Similarity=0.407  Sum_probs=59.4

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .|+|.+|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |.+|++|+.|
T Consensus      1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~~G~~l~~i 1200 (1201)
T TIGR02712      1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VDAGDIVAVL 1200 (1201)
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eCCCCEEEEe
Confidence            389999999999999999999999999999999999999999999999999 9999999987

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.70  E-value=3.3e-08  Score=112.53  Aligned_cols=62  Identities=32%  Similarity=0.486  Sum_probs=60.3

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      .|+|.+|+|++||+|++||+|++||+||+..+|.||.+|+|+++++++|+. |..|++|+.|+
T Consensus       530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i~  591 (592)
T PRK09282        530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VNPGDVLMEIE  591 (592)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEec
Confidence            489999999999999999999999999999999999999999999999999 99999999984

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.68  E-value=2.3e-08  Score=113.39  Aligned_cols=58  Identities=31%  Similarity=0.492  Sum_probs=55.9

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPI  284 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l  284 (622)
                      .|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.+|++++|+. |.+|++|
T Consensus       525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~~G~~l  582 (582)
T TIGR01108       525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VSVGQVL  582 (582)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCCC
Confidence            379999999999999999999999999999999999999999999999999 9999875

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.65  E-value=4.7e-08  Score=111.04  Aligned_cols=61  Identities=33%  Similarity=0.436  Sum_probs=59.2

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus       532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I  592 (593)
T PRK14040        532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VAVGDTLLTL  592 (593)
T ss_pred             cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence            379999999999999999999999999999999999999999999999999 9999999987

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.57  E-value=1.1e-07  Score=115.51  Aligned_cols=62  Identities=27%  Similarity=0.423  Sum_probs=60.3

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      .|+|++|+|++||.|++||+|+.+|+||+..+|.||.+|+|+++++++|+. |..|++|+.|+
T Consensus      1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~~g~~l~~i~ 1145 (1146)
T PRK12999       1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VEAGDLLVELE 1145 (1146)
T ss_pred             eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEc
Confidence            399999999999999999999999999999999999999999999999999 99999999984

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.54  E-value=1.4e-07  Score=102.92  Aligned_cols=62  Identities=29%  Similarity=0.471  Sum_probs=60.3

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      .|+|+...|++|++|.+||+|+.+|.|||...|+++.+|+|+++.+.+||. |..|++|+.++
T Consensus       583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~~g~vLve~~  644 (645)
T COG4770         583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VAVGTVLVEFE  644 (645)
T ss_pred             CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cccCceEEEec
Confidence            489999999999999999999999999999999999999999999999999 99999999985

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.48  E-value=2.5e-07  Score=105.34  Aligned_cols=62  Identities=29%  Similarity=0.468  Sum_probs=59.8

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      .|+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus       530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i~  591 (592)
T PRK09282        530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VNPGDVLMEIE  591 (592)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEec
Confidence            379999999999999999999999999999999999999999999999999 99999999883

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.44  E-value=7.3e-07  Score=100.28  Aligned_cols=61  Identities=23%  Similarity=0.443  Sum_probs=58.9

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      |+|+++.|++||.|++||+|+.+|.|||+..|.+|.+|+|.+++|+.|+. |..|+.|..+.
T Consensus      1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i~~gDLLi~~~ 1148 (1149)
T COG1038        1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-IDGGDLLVVVE 1148 (1149)
T ss_pred             CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCc-cccCceEEEcc
Confidence            79999999999999999999999999999999999999999999999999 99999998763

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.39  E-value=4.6e-07  Score=99.02  Aligned_cols=61  Identities=26%  Similarity=0.439  Sum_probs=59.3

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      |+|+.+.|++|+.|.+||+|+.+|.|||++.|.++.+|+|+++.+.+|+. |..|++|+.+.
T Consensus       584 G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~~g~vLve~~  644 (645)
T COG4770         584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VAVGTVLVEFE  644 (645)
T ss_pred             ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cccCceEEEec
Confidence            79999999999999999999999999999999999999999999999999 99999999874

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.38  E-value=4.9e-07  Score=101.64  Aligned_cols=67  Identities=25%  Similarity=0.481  Sum_probs=62.3

Q ss_pred             CCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995           94 LSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus        94 ~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      +|-.|. |.|++.+|++||.|++||+|+.+|.|||+..|.+|++|+|++++++.||. |..|+.|..++
T Consensus      1082 igApmp-G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i~~gDLLi~~~ 1148 (1149)
T COG1038        1082 IGAPMP-GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-IDGGDLLVVVE 1148 (1149)
T ss_pred             cCCCCC-CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCc-cccCceEEEcc
Confidence            444554 88999999999999999999999999999999999999999999999999 99999998874

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.37  E-value=6.1e-07  Score=109.22  Aligned_cols=61  Identities=23%  Similarity=0.396  Sum_probs=59.5

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      |+|++|+|++||.|++||+|+.+|+||+.++|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus      1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~~g~~l~~i~ 1145 (1146)
T PRK12999       1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VEAGDLLVELE 1145 (1146)
T ss_pred             EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEc
Confidence            89999999999999999999999999999999999999999999999999 99999999883

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.21  E-value=2.4e-06  Score=74.57  Aligned_cols=63  Identities=19%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             eEEecCCCCCCCceEEEEE-EEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995           87 TVVGMPALSPTMSQGNIAK-WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~-w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~  150 (622)
                      ..+-|-+.+..+ =|+|.. |++++|+.|++||+||+||++|+..+|.||.+|+|.++..+.++.
T Consensus        16 ~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          16 ATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             EEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            445555555443 377877 788889999999999999999999999999999999998877765

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.08  E-value=6.3e-06  Score=91.14  Aligned_cols=67  Identities=27%  Similarity=0.380  Sum_probs=62.1

Q ss_pred             CCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995           94 LSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus        94 ~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      +|--|. |+|++..|++|+.|++||+||.+..|||++-|.||.+|+++++++..|+. +..|+.++.++
T Consensus      1109 igAPMp-G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~-~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1109 IGAPMP-GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK-VEGGDLIVELE 1175 (1176)
T ss_pred             ccCCCC-CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc-ccccceEEEcc
Confidence            444444 89999999999999999999999999999999999999999999999999 99999998875

>cd06848 GCS_H Glycine cleavage H-protein

Probab=97.91  E-value=1.8e-05  Score=69.02  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=44.6

Q ss_pred             ceeeE-eeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCe
Q 006995          227 GNIAK-WRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK  276 (622)
Q Consensus       227 g~i~~-w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~  276 (622)
                      |+|.. |++++|+.|++||.|+.||++|+..+|.||.+|+|.+++.+.++.
T Consensus        29 G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            67887 677779999999999999999999999999999999997666554

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=97.88  E-value=1.8e-05  Score=87.71  Aligned_cols=61  Identities=21%  Similarity=0.340  Sum_probs=58.8

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      |+|+++.|++|+.|++||+|+.+..|||++-|.||.+|+|.++++..|+. ++-|+.|++++
T Consensus      1115 G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~-~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1115 GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK-VEGGDLIVELE 1175 (1176)
T ss_pred             CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc-ccccceEEEcc
Confidence            79999999999999999999999999999999999999999999999999 99999988874

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=97.84  E-value=2.6e-05  Score=92.57  Aligned_cols=68  Identities=24%  Similarity=0.403  Sum_probs=63.4

Q ss_pred             CceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCcc
Q 006995           98 MSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD  167 (622)
Q Consensus        98 ~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~~  167 (622)
                      -+-|++++|+|+.|++|+.||+-+|||.|||.|.+.+..+|+| ++..++|+. +.+|.+|+.+..+...
T Consensus       691 Ps~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~-i~aG~vlakL~lDdpS  758 (2196)
T KOG0368|consen  691 PSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDA-IEAGSVLAKLTLDDPS  758 (2196)
T ss_pred             CCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCc-cCccceeEEeecCChh
Confidence            3569999999999999999999999999999999999999999 888999999 9999999999876643

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=97.83  E-value=2.5e-05  Score=69.79  Aligned_cols=50  Identities=22%  Similarity=0.318  Sum_probs=41.0

Q ss_pred             EEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995          101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (622)
Q Consensus       101 g~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~  150 (622)
                      |+|+.... ++|++|++||++++||++|+..+|.||.+|+|.+++.+..+.
T Consensus        30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~   80 (110)
T TIGR03077        30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDD   80 (110)
T ss_pred             CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhC
Confidence            34444433 669999999999999999999999999999999996555543

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.74  E-value=2.3e-05  Score=84.77  Aligned_cols=60  Identities=23%  Similarity=0.276  Sum_probs=58.1

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      |.|.+.+||+||.|.+||.||.++.||+...+++|.+|+|+.+.++.|+. |.-|.+|..+
T Consensus       610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~-v~~g~vlv~~  669 (670)
T KOG0238|consen  610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT-VGDGAVLVEF  669 (670)
T ss_pred             CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc-cCCCceEEEe
Confidence            68999999999999999999999999999999999999999999999999 9999999876

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.72  E-value=7e-05  Score=67.29  Aligned_cols=59  Identities=20%  Similarity=0.263  Sum_probs=43.6

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEec
Q 006995           87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP  146 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~  146 (622)
                      ..|-|-+.+... =|+|..... ++|++|++||+||+||++|+..+|.||.+|+|.++.-.
T Consensus        19 ~~vGiT~~a~~~-lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~   78 (114)
T PRK00624         19 VRLGLTSKMQEN-LGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTA   78 (114)
T ss_pred             EEEeeCHHHHHh-cCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence            344444444331 144544444 56999999999999999999999999999999988443

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.64  E-value=7.4e-05  Score=70.02  Aligned_cols=63  Identities=22%  Similarity=0.282  Sum_probs=51.5

Q ss_pred             eEEecCCCCCCCceEEEEEEEec-CCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKK-EGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~-~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~  150 (622)
                      ..|-|-++...+- |+|+.+.+. +|++|++||+++.||++|+..+|.||.+|+|.++....-+.
T Consensus        31 ~~vGitd~aq~~l-G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~   94 (144)
T PRK13380         31 VTVGITDYAQTMA-GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDS   94 (144)
T ss_pred             EEEecCHHHHHhc-CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhC
Confidence            4555555555433 778888876 89999999999999999999999999999999987775543

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=97.56  E-value=0.00025  Score=77.95  Aligned_cols=68  Identities=16%  Similarity=0.211  Sum_probs=59.1

Q ss_pred             ceEEEEEEE-ecCCCeeecCCeEEEEEec------------------------------------------------cee
Q 006995           99 SQGNIAKWR-KKEGDKIEIGDILCEIETD------------------------------------------------KAT  129 (622)
Q Consensus        99 ~eg~i~~w~-v~~Gd~V~~g~~l~~vetd------------------------------------------------K~~  129 (622)
                      ..|.|.+.+ +++||.|++||+|++|++.                                                ...
T Consensus       130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~  209 (409)
T PRK09783        130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR  209 (409)
T ss_pred             cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence            459999999 9999999999999999842                                                013


Q ss_pred             eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCcc
Q 006995          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD  167 (622)
Q Consensus       130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~~  167 (622)
                      ..|.||++|+|.++.+.+|+. |..|++|+.|.+...-
T Consensus       210 ~~I~AP~dGvV~~~~v~~G~~-V~~g~~L~~I~d~~~l  246 (409)
T PRK09783        210 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMDPV  246 (409)
T ss_pred             EEEECCCCeEEEEEECCCCCE-ECCCCeEEEEEcCCeE
Confidence            579999999999999999999 9999999999776543

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=97.54  E-value=0.00021  Score=76.13  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=32.0

Q ss_pred             eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus       130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      ..|.||++|+|.++.++.|+. |..|++|+.|.+.+
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~  239 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQV-VSPGQPLMAVVPAE  239 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCE-eCCCCeeEEEEcCC
Confidence            469999999999999999999 99999999997544

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=97.53  E-value=0.0002  Score=75.81  Aligned_cols=66  Identities=15%  Similarity=0.295  Sum_probs=57.7

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~--------------------------------------------------  128 (622)
                      ..|.|.+++|++||.|++||+|+++++...                                                  
T Consensus        54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~  133 (310)
T PRK10559         54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT  133 (310)
T ss_pred             CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            459999999999999999999999987310                                                  


Q ss_pred             --------------------eeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995          129 --------------------TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus       129 --------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                                          ...|.||++|+|.++.++.|+. |..|++|+.|.+.+
T Consensus       134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~-V~~g~~l~~Iv~~~  189 (310)
T PRK10559        134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEF-ITRGSTAVALVKQN  189 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCE-ecCCCeeEEEEeCC
Confidence                                2458999999999999999999 99999999987543

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=97.52  E-value=0.00015  Score=64.79  Aligned_cols=48  Identities=21%  Similarity=0.293  Sum_probs=40.2

Q ss_pred             ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCC
Q 006995          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG  274 (622)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g  274 (622)
                      |.|+-... ++|+.|++||++++||++|+..+|.||.+|+|.+++-+..
T Consensus        30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~   78 (110)
T TIGR03077        30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE   78 (110)
T ss_pred             CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence            45555443 6799999999999999999999999999999999964433

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.44  E-value=0.0004  Score=63.82  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=47.2

Q ss_pred             EEEEEEE-ecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEE---EecCCCcccc---CCC-eEEEEEc
Q 006995          101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI---LVPEGSKDVP---VGQ-PIAITVE  163 (622)
Q Consensus       101 g~i~~w~-v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~---~~~~g~~~v~---~G~-~l~~i~~  163 (622)
                      |+|..+. .++|++|++||+++.||++|+..+|.||.+|+|.++   +....+. +.   -|+ -|+.|..
T Consensus        37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~-ln~~p~~~gWl~~v~~  106 (127)
T PRK01202         37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPEL-VNEDPYGEGWLFKIKP  106 (127)
T ss_pred             CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHh-hcCCCCCCceEEEEEe
Confidence            3444433 357999999999999999999999999999999999   4444444 44   443 7777754

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.43  E-value=0.00023  Score=64.00  Aligned_cols=44  Identities=23%  Similarity=0.325  Sum_probs=38.3

Q ss_pred             ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (622)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~  270 (622)
                      |.|+-... ++|+.|++||++++||++|+..+|.||.+|+|.+++
T Consensus        32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN   76 (114)
T PRK00624         32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN   76 (114)
T ss_pred             CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence            45555444 569999999999999999999999999999999984

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=97.43  E-value=0.00024  Score=74.85  Aligned_cols=67  Identities=28%  Similarity=0.453  Sum_probs=58.2

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~--------------------------------------------------  128 (622)
                      ..|.|.+++|++||.|++||+|+.+++.-.                                                  
T Consensus        33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~  112 (322)
T TIGR01730        33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE  112 (322)
T ss_pred             ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            458999999999999999999999975311                                                  


Q ss_pred             ---------------------eeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995          129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (622)
Q Consensus       129 ---------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~  166 (622)
                                           ...|.||++|+|..+.++.|+. +..|++|+.|.+.+.
T Consensus       113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~~  170 (322)
T TIGR01730       113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAY-VTAGQTLATIVDLDP  170 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCce-eCCCCcEEEEEcCCc
Confidence                                 2469999999999999999999 999999999975443

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.41  E-value=0.00013  Score=79.25  Aligned_cols=60  Identities=20%  Similarity=0.269  Sum_probs=57.6

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      |.|.+++|++||.|++||.|+.++.||+...+.+|.+|++..+.++.|+. |.-|.+|..+
T Consensus       610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~-v~~g~vlv~~  669 (670)
T KOG0238|consen  610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT-VGDGAVLVEF  669 (670)
T ss_pred             CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc-cCCCceEEEe
Confidence            58999999999999999999999999999999999999999999999999 9999998875

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=97.33  E-value=0.0005  Score=73.84  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=32.0

Q ss_pred             eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus       130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      ..|.||++|+|.++.++.|+. |..|++|+.|.+.+
T Consensus       209 ~~I~AP~dG~V~~~~~~~G~~-V~~g~~l~~I~~~~  243 (346)
T PRK10476        209 TTVRAPFDGRVVGLKVSVGEF-AAPMQPIFTLIDTD  243 (346)
T ss_pred             CEEECCCCcEEEeeecCCCCC-cCCCCeEEEEecCC
Confidence            368999999999999999999 99999999997654

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=97.32  E-value=0.00036  Score=83.28  Aligned_cols=64  Identities=23%  Similarity=0.443  Sum_probs=59.0

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~  291 (622)
                      .|++++|+|+.|++|..||+-+|||.|||.|.+.++.+|.|. ...++|+. +..|++|+.+.-+.
T Consensus       693 ~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~~-i~aG~vlakL~lDd  756 (2196)
T KOG0368|consen  693 PGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGDA-IEAGSVLAKLTLDD  756 (2196)
T ss_pred             CccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCCc-cCccceeEEeecCC
Confidence            489999999999999999999999999999999999999995 55899999 99999999987543

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.30  E-value=0.00034  Score=65.62  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=42.8

Q ss_pred             ceeeEeeeC-CCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCC
Q 006995          227 GNIAKWRKN-EGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG  274 (622)
Q Consensus       227 g~i~~w~v~-~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g  274 (622)
                      |.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.+++.+--
T Consensus        44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~   92 (144)
T PRK13380         44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE   92 (144)
T ss_pred             CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence            678887775 899999999999999999999999999999999875433

>PRK12784 hypothetical protein; Provisional

Probab=97.26  E-value=0.0016  Score=53.31  Aligned_cols=65  Identities=12%  Similarity=0.081  Sum_probs=58.9

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEe-cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIET-DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vet-dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      -.|+|-+.|+.+++.|-++++|+-|++ |+.-..|.--.+|.|.-+.+++|+. +..+..|+.++++
T Consensus        12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~-i~~dtlL~~~edD   77 (84)
T PRK12784         12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ-IHTDTLLVRLEDD   77 (84)
T ss_pred             cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce-ecCCcEEEEEeec
Confidence            468999999999999999999999998 4556668889999999999999999 9999999999754

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.23  E-value=0.00068  Score=73.91  Aligned_cols=72  Identities=18%  Similarity=0.279  Sum_probs=58.8

Q ss_pred             CCCCCCceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------
Q 006995           93 ALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------  128 (622)
Q Consensus        93 ~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~--------------------------------------------  128 (622)
                      .++.- ..|+|.++++++||.|++||+|+.|++...                                            
T Consensus        65 ~l~~~-v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~  143 (385)
T PRK09578         65 EVRAR-VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTE  143 (385)
T ss_pred             EEecc-CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            44444 459999999999999999999999987311                                            


Q ss_pred             ---------------------------eeEEecCCcEEEEEEEecCCCccccCC--CeEEEEEcCCc
Q 006995          129 ---------------------------TVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDAD  166 (622)
Q Consensus       129 ---------------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G--~~l~~i~~~~~  166 (622)
                                                 ...|.||++|+|.+.++++|+. |..|  ++|+.|...+.
T Consensus       144 ~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~-V~~g~~~~l~~i~~~~~  209 (385)
T PRK09578        144 AVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGAL-VGQDQATPLTTVEQLDP  209 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCe-ecCCCCcceEEEEecCc
Confidence                                       1369999999999999999999 9886  58988865443

>TIGR00527 gcvH glycine cleavage system H protein

Probab=97.18  E-value=0.00049  Score=63.23  Aligned_cols=49  Identities=16%  Similarity=0.211  Sum_probs=40.3

Q ss_pred             EEEEEEE-ecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC
Q 006995          101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS  149 (622)
Q Consensus       101 g~i~~w~-v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~  149 (622)
                      |+|..+. .++|++|++||++|.||++|+..+|.||.+|+|.++.-..-+
T Consensus        36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~   85 (127)
T TIGR00527        36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED   85 (127)
T ss_pred             CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence            4454442 357999999999999999999999999999999888655444

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.17  E-value=0.00079  Score=71.81  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=31.8

Q ss_pred             eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus       130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      ..|.||++|+|..+.+.+|+. |..|++|+.|.+..
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~-V~~G~~l~~I~~~~  238 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTM-LNAGSTVFTLSLTR  238 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCC-cCCCCeEEEEecCC
Confidence            479999999999999999999 99999999996543

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.15  E-value=0.0009  Score=73.16  Aligned_cols=36  Identities=17%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (622)
Q Consensus       130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~  166 (622)
                      ..|.||++|+|..+.++.|+. |..|++|+.|.+...
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~-V~~g~pl~~Iv~~~~  251 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQ-ISPTTPLMAVVPATN  251 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCE-eCCCCeEEEEEeCCc
Confidence            369999999999999999999 999999999975543

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.08  E-value=0.00077  Score=51.51  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=29.4

Q ss_pred             eeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995          129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus       129 ~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      ++.|.++.+|+|.++++++|+. |+.|++|+.|+..
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~-VkkGd~L~~ld~~   36 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQ-VKKGDVLLVLDSP   36 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCE-EcCCCEEEEECcH
Confidence            3578889999999999999998 9999999988643

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.07  E-value=0.0006  Score=52.09  Aligned_cols=29  Identities=24%  Similarity=0.495  Sum_probs=26.4

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecc
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDK  127 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK  127 (622)
                      ..|+|.+|+|++||.|++||+|+++++..
T Consensus         9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~   37 (50)
T PF13533_consen    9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD   37 (50)
T ss_pred             CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence            36999999999999999999999998754

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=97.07  E-value=0.0017  Score=71.50  Aligned_cols=65  Identities=17%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             cceeeEee-eCCCCeeecCCeeEEEeccc------------------------------------------------cee
Q 006995          226 QGNIAKWR-KNEGDKIEVGDVICEIETDK------------------------------------------------ATL  256 (622)
Q Consensus       226 eg~i~~w~-v~~Gd~V~~gd~l~~vetdK------------------------------------------------~~~  256 (622)
                      .|.|.+++ +++||.|++||+|++|++..                                                ...
T Consensus       131 ~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~  210 (409)
T PRK09783        131 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRF  210 (409)
T ss_pred             CEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcE
Confidence            48999998 99999999999999998310                                                134


Q ss_pred             eEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995          257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (622)
Q Consensus       257 ~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~  291 (622)
                      .|.||++|+|.++.+.+|+. |..|++|+.|.+..
T Consensus       211 ~I~AP~dGvV~~~~v~~G~~-V~~g~~L~~I~d~~  244 (409)
T PRK09783        211 TLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMD  244 (409)
T ss_pred             EEECCCCeEEEEEECCCCCE-ECCCCeEEEEEcCC
Confidence            69999999999999999999 99999999997543

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=97.05  E-value=0.00037  Score=74.75  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=37.2

Q ss_pred             cCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhc
Q 006995          330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS  369 (622)
Q Consensus       330 ~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~  369 (622)
                      ++||.+|++|+++|||++.++|||++|||+++||+++...
T Consensus         7 ~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~   46 (347)
T PRK14843          7 RATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT   46 (347)
T ss_pred             cCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence            4789999999999999999999999999999999988653

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=97.03  E-value=0.0015  Score=69.52  Aligned_cols=34  Identities=26%  Similarity=0.420  Sum_probs=31.2

Q ss_pred             eeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       256 ~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      ..|.||++|+|..+.+..|+. |..|++|+.|.+.
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~  238 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQV-VSPGQPLMAVVPA  238 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCE-eCCCCeeEEEEcC
Confidence            368999999999999999999 9999999999754

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=96.98  E-value=0.0017  Score=71.06  Aligned_cols=67  Identities=31%  Similarity=0.310  Sum_probs=55.9

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~--------------------------------------------------  128 (622)
                      ..|.|.+.+|++||.|++||+|++|+....                                                  
T Consensus        72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~  151 (397)
T PRK15030         72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ  151 (397)
T ss_pred             CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            349999999999999999999999985210                                                  


Q ss_pred             ---------------------eeEEecCCcEEEEEEEecCCCccccCCCe--EEEEEcCCc
Q 006995          129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP--IAITVEDAD  166 (622)
Q Consensus       129 ---------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~~--l~~i~~~~~  166 (622)
                                           ...|.||++|+|.+++++.|+. |..|++  |+.|.+.+.
T Consensus       152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~~  211 (397)
T PRK15030        152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLDP  211 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCE-ECCCCCceEEEEEecCc
Confidence                                 1358999999999999999999 999985  677755443

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=96.97  E-value=0.0017  Score=70.77  Aligned_cols=67  Identities=27%  Similarity=0.266  Sum_probs=56.6

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecc---------------------------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDK---------------------------------------------------  127 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK---------------------------------------------------  127 (622)
                      ..|.|.+.++++||.|++||+|++|+...                                                   
T Consensus        68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~  147 (385)
T PRK09859         68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN  147 (385)
T ss_pred             CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            45999999999999999999999998530                                                   


Q ss_pred             --------------------eeeEEecCCcEEEEEEEecCCCccccCCC--eEEEEEcCCc
Q 006995          128 --------------------ATVEFESLEEGFLAKILVPEGSKDVPVGQ--PIAITVEDAD  166 (622)
Q Consensus       128 --------------------~~~~i~s~~~G~i~~~~~~~g~~~v~~G~--~l~~i~~~~~  166 (622)
                                          ....|.||++|+|.+.+++.|+. |..|+  +|+.|.+.+.
T Consensus       148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~~  207 (385)
T PRK09859        148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGAL-VTANQADSLVTVQRLDP  207 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCe-ECCCCCcceEEEEecCC
Confidence                                01469999999999999999999 99985  6888865443

>PRK01202 glycine cleavage system protein H; Provisional

Probab=96.96  E-value=0.0022  Score=58.93  Aligned_cols=44  Identities=20%  Similarity=0.328  Sum_probs=38.1

Q ss_pred             ceeeEee-eCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995          227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (622)
Q Consensus       227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~  270 (622)
                      |+|..+. .++|++|++||+++.||++|...+|.||.+|+|.+++
T Consensus        37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN   81 (127)
T PRK01202         37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVN   81 (127)
T ss_pred             CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEh
Confidence            4555443 3579999999999999999999999999999999994

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=96.96  E-value=0.0017  Score=68.87  Aligned_cols=64  Identities=14%  Similarity=0.289  Sum_probs=56.3

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (622)
                      .|.|.+++|++||.|++||+|++++....                                                   
T Consensus        55 ~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a  134 (310)
T PRK10559         55 SGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTV  134 (310)
T ss_pred             ceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999988310                                                   


Q ss_pred             -------------------eeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          255 -------------------TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       255 -------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                                         ...|.||++|+|.++.+++|+. |..|++|+.|.+.
T Consensus       135 ~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~-V~~g~~l~~Iv~~  188 (310)
T PRK10559        135 LHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEF-ITRGSTAVALVKQ  188 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCE-ecCCCeeEEEEeC
Confidence                               1359999999999999999999 9999999988754

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=96.89  E-value=0.0016  Score=68.52  Aligned_cols=64  Identities=28%  Similarity=0.447  Sum_probs=56.0

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (622)
                      .|.|.++++++||.|++||+|+.++..-.                                                   
T Consensus        34 ~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~  113 (322)
T TIGR01730        34 AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEA  113 (322)
T ss_pred             cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence            48999999999999999999999976311                                                   


Q ss_pred             --------------------eeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       255 --------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                                          ...|.||.+|+|..+.+..|+. +..|++|+.|...
T Consensus       114 ~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~  168 (322)
T TIGR01730       114 AQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAY-VTAGQTLATIVDL  168 (322)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCce-eCCCCcEEEEEcC
Confidence                                1359999999999999999999 9999999998653

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=96.85  E-value=0.0025  Score=69.04  Aligned_cols=66  Identities=18%  Similarity=0.256  Sum_probs=55.2

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecce---------------------------------------------------
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKA---------------------------------------------------  128 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~---------------------------------------------------  128 (622)
                      .|.|.+|++++||.|++||+|++++....                                                   
T Consensus        69 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~  148 (370)
T PRK11578         69 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDT  148 (370)
T ss_pred             ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            49999999999999999999999987310                                                   


Q ss_pred             ----------------------------------eeEEecCCcEEEEEEEecCCCccccCC---CeEEEEEcCCc
Q 006995          129 ----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVG---QPIAITVEDAD  166 (622)
Q Consensus       129 ----------------------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G---~~l~~i~~~~~  166 (622)
                                                        ...|+||++|+|.++++..|+. |..|   .+|+.|.+.+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~-V~~~~~~~~l~~i~~~~~  222 (370)
T PRK11578        149 AATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMST  222 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcE-eecccCCceEEEEecCCc
Confidence                                              1379999999999999999999 9766   37888865443

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=96.82  E-value=0.0026  Score=68.36  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=30.8

Q ss_pred             eEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       257 ~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      .|.||++|+|.++.+..|+. |..|++|+.|...
T Consensus       210 ~I~AP~dG~V~~~~~~~G~~-V~~g~~l~~I~~~  242 (346)
T PRK10476        210 TVRAPFDGRVVGLKVSVGEF-AAPMQPIFTLIDT  242 (346)
T ss_pred             EEECCCCcEEEeeecCCCCC-cCCCCeEEEEecC
Confidence            58999999999999999999 9999999999764

>TIGR00527 gcvH glycine cleavage system H protein

Probab=96.80  E-value=0.0013  Score=60.33  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=38.1

Q ss_pred             ceeeEee-eCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEec
Q 006995          227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA  271 (622)
Q Consensus       227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~  271 (622)
                      |.|.-+. .++|+.|++||+++.||++|+..+|.||.+|+|.+++-
T Consensus        36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~   81 (127)
T TIGR00527        36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVND   81 (127)
T ss_pred             CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehH
Confidence            3444432 35799999999999999999999999999999999864

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=96.78  E-value=0.0025  Score=70.28  Aligned_cols=65  Identities=20%  Similarity=0.360  Sum_probs=54.8

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~--------------------------------------------------  128 (622)
                      ..|.|.++++++||.|++||+|++|.....                                                  
T Consensus        94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~  173 (415)
T PRK11556         94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS  173 (415)
T ss_pred             ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            469999999999999999999999975310                                                  


Q ss_pred             ---------------------eeEEecCCcEEEEEEEecCCCccccCCC--eEEEEEcC
Q 006995          129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQ--PIAITVED  164 (622)
Q Consensus       129 ---------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~--~l~~i~~~  164 (622)
                                           ...|.||++|+|..+.++.|+. |..|+  +|+.|...
T Consensus       174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~-V~~g~~~~l~~i~~~  231 (415)
T PRK11556        174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQ-ISSGDTTGIVVITQT  231 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCce-ecCCCCceeEEEecC
Confidence                                 2369999999999999999999 99985  67777543

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=96.72  E-value=0.0032  Score=57.46  Aligned_cols=47  Identities=28%  Similarity=0.350  Sum_probs=35.4

Q ss_pred             EEEEEEE-ecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecC
Q 006995          101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPE  147 (622)
Q Consensus       101 g~i~~w~-v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~  147 (622)
                      |+|+.+. .++|++|++|++++.||+.|...++.||.+|+|.++.-..
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l   78 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEEL   78 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHH
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccc
Confidence            4444443 4569999999999999999999999999999998885543

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=96.68  E-value=0.0016  Score=68.67  Aligned_cols=66  Identities=27%  Similarity=0.507  Sum_probs=48.6

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecce---------------------e----------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA---------------------T----------------------------  129 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~---------------------~----------------------------  129 (622)
                      ..|.| +|+|++||+|++||+|++++++..                     .                            
T Consensus        28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  106 (328)
T PF12700_consen   28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI  106 (328)
T ss_dssp             S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred             CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence            35999 999999999999999999997411                     1                            


Q ss_pred             ------------------e----------EEecCCcEEEE-------------------------EEEecCCCccccCCC
Q 006995          130 ------------------V----------EFESLEEGFLA-------------------------KILVPEGSKDVPVGQ  156 (622)
Q Consensus       130 ------------------~----------~i~s~~~G~i~-------------------------~~~~~~g~~~v~~G~  156 (622)
                                        .          .|.||++|+|.                         ++.++.|+. |..|+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~-v~~g~  185 (328)
T PF12700_consen  107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQY-VAAGQ  185 (328)
T ss_dssp             STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-E-ETSTT
T ss_pred             HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCE-ECCCc
Confidence                              1          29999999999                         999999999 99999


Q ss_pred             eEEEEEcCCc
Q 006995          157 PIAITVEDAD  166 (622)
Q Consensus       157 ~l~~i~~~~~  166 (622)
                      +|+.|.+...
T Consensus       186 ~l~~i~~~~~  195 (328)
T PF12700_consen  186 PLFTIADLSN  195 (328)
T ss_dssp             CSEEEEEESE
T ss_pred             eeeeeccCCc
Confidence            9999976543

...

>PRK12784 hypothetical protein; Provisional

Probab=96.65  E-value=0.0083  Score=49.23  Aligned_cols=64  Identities=11%  Similarity=0.112  Sum_probs=57.6

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEeccc-ceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDK-ATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK-~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      .|++-+++++++++|-+.+.|+-|+++. ....|.-..+|.|..+.+.+|+. +..+..|+.+.++
T Consensus        13 ~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~-i~~dtlL~~~edD   77 (84)
T PRK12784         13 EGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ-IHTDTLLVRLEDD   77 (84)
T ss_pred             ccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce-ecCCcEEEEEeec
Confidence            4899999999999999999999999854 45568889999999999999999 9999999998653

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=96.56  E-value=0.0045  Score=67.68  Aligned_cols=34  Identities=15%  Similarity=0.311  Sum_probs=31.4

Q ss_pred             eEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995          257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (622)
Q Consensus       257 ~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~  291 (622)
                      .|.||++|+|..+.++.|+. |..|++|+.|.+..
T Consensus       217 ~I~AP~dG~V~~~~v~~G~~-V~~g~pl~~Iv~~~  250 (390)
T PRK15136        217 KIVSPMTGYVSRRSVQVGAQ-ISPTTPLMAVVPAT  250 (390)
T ss_pred             EEECCCCeEEEEEecCCCCE-eCCCCeEEEEEeCC
Confidence            69999999999999999999 99999999997643

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=96.45  E-value=0.0071  Score=64.27  Aligned_cols=33  Identities=18%  Similarity=0.156  Sum_probs=28.4

Q ss_pred             EEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995          131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus       131 ~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      .|.||++|+|..+++..|+. |.. ++|+.|...+
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~-v~~-~~l~~i~~~~  238 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEV-IGS-EGILEMGDTS  238 (327)
T ss_pred             EEECCCCeEEEEEecCCCCc-cCC-CccEEEecCC
Confidence            57899999999999999998 886 8888886533

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=96.43  E-value=0.0058  Score=65.18  Aligned_cols=34  Identities=12%  Similarity=0.148  Sum_probs=30.9

Q ss_pred             eeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       256 ~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      ..|.||.+|+|..+.+.+|+. |..|++|+.|...
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~-V~~G~~l~~I~~~  237 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTM-LNAGSTVFTLSLT  237 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCC-cCCCCeEEEEecC
Confidence            369999999999999999999 9999999998644

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=96.36  E-value=0.0069  Score=66.07  Aligned_cols=63  Identities=19%  Similarity=0.328  Sum_probs=54.0

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (622)
                      .|.|.++++++||.|++||+|+.|+....                                                   
T Consensus        71 ~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~  150 (385)
T PRK09578         71 AGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQ  150 (385)
T ss_pred             cEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            48999999999999999999999987411                                                   


Q ss_pred             --------------------eeeEecCCCeeEEEEeccCCCeecccC--CeEEEEec
Q 006995          255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVE  289 (622)
Q Consensus       255 --------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG--~~l~~i~~  289 (622)
                                          ...|.||++|+|.+.++++|+. |..|  ++|+.|..
T Consensus       151 a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~-V~~g~~~~l~~i~~  206 (385)
T PRK09578        151 AKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGAL-VGQDQATPLTTVEQ  206 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCe-ecCCCCcceEEEEe
Confidence                                1259999999999999999999 9885  58888754

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=96.23  E-value=0.005  Score=56.21  Aligned_cols=61  Identities=18%  Similarity=0.236  Sum_probs=45.4

Q ss_pred             eEEecCCCCCCCceEEEEEE-EecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCC
Q 006995           87 TVVGMPALSPTMSQGNIAKW-RKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG  148 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w-~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g  148 (622)
                      ..|-|-+.+.. .=|.|+-. +.++|+.|++|+.++.||+-|+..+|.||.+|.|.++.-..-
T Consensus        26 ~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~   87 (131)
T COG0509          26 ATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALV   87 (131)
T ss_pred             EEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhh
Confidence            44555554444 22555544 346789999999999999999999999999999977754433

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=96.11  E-value=0.011  Score=64.76  Aligned_cols=63  Identities=27%  Similarity=0.323  Sum_probs=53.5

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (622)
                      .|.|.++++++||.|++||+|++|+....                                                   
T Consensus        73 sG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~  152 (397)
T PRK15030         73 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ  152 (397)
T ss_pred             cEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence            48999999999999999999999986310                                                   


Q ss_pred             --------------------eeeEecCCCeeEEEEeccCCCeecccCCe--EEEEec
Q 006995          255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP--IAITVE  289 (622)
Q Consensus       255 --------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~~--l~~i~~  289 (622)
                                          ...|.||++|+|.+++++.|+. |..|++  |+.+..
T Consensus       153 a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~  208 (397)
T PRK15030        153 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQ  208 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCE-ECCCCCceEEEEEe
Confidence                                1249999999999999999999 999985  666654

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=96.11  E-value=0.011  Score=53.98  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=34.5

Q ss_pred             ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (622)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~  270 (622)
                      |.|+.+.. ++|+.+++|++++.||+.|...++.||.+|+|.++.
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN   75 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN   75 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence            55655544 569999999999999999999999999999999985

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=96.09  E-value=0.012  Score=64.26  Aligned_cols=63  Identities=24%  Similarity=0.272  Sum_probs=53.9

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEeccc----------------------------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDK----------------------------------------------------  253 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK----------------------------------------------------  253 (622)
                      .|.|.++++++||.|++||+|++|+...                                                    
T Consensus        69 ~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~  148 (385)
T PRK09859         69 GGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNE  148 (385)
T ss_pred             cEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence            4899999999999999999999998641                                                    


Q ss_pred             -------------------ceeeEecCCCeeEEEEeccCCCeecccCC--eEEEEec
Q 006995          254 -------------------ATLEFECLEEGYLAKILAPEGSKDVAVGQ--PIAITVE  289 (622)
Q Consensus       254 -------------------~~~~i~s~~~G~v~~i~~~~g~~~v~vG~--~l~~i~~  289 (622)
                                         ....|.||++|+|.+.++..|+. |..|+  +|+.+..
T Consensus       149 a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~  204 (385)
T PRK09859        149 AEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGAL-VTANQADSLVTVQR  204 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCe-ECCCCCcceEEEEe
Confidence                               01369999999999999999999 99985  5887754

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=96.01  E-value=0.021  Score=58.18  Aligned_cols=59  Identities=24%  Similarity=0.344  Sum_probs=50.8

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      .|. .+.+++-||.|++||+|+.|+.    .+|.||.+|+|.-+ .++|-. |..|..|++|+.-.
T Consensus       172 ~Gi-~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~-V~~G~Ki~dIDPR~  230 (256)
T TIGR03309       172 DGI-VTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLT-VTEGLKIGDVDPRG  230 (256)
T ss_pred             CeE-EeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCC-cCCCCEEEEECCCC
Confidence            354 4679999999999999999974    79999999999766 678988 99999999997544

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=95.77  E-value=0.021  Score=61.97  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=27.9

Q ss_pred             eEecCCCeeEEEEeccCCCeecccC---CeEEEEecC
Q 006995          257 EFECLEEGYLAKILAPEGSKDVAVG---QPIAITVED  290 (622)
Q Consensus       257 ~i~s~~~G~v~~i~~~~g~~~v~vG---~~l~~i~~~  290 (622)
                      .|.||++|+|..+.+..|+. |..|   ++|+.|...
T Consensus       185 ~I~AP~dG~V~~~~~~~G~~-V~~~~~~~~l~~i~~~  220 (370)
T PRK11578        185 RIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADM  220 (370)
T ss_pred             EEECCCCcEEEeeecCCCcE-eecccCCceEEEEecC
Confidence            69999999999999999998 9766   368887543

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=95.70  E-value=0.019  Score=63.41  Aligned_cols=63  Identities=17%  Similarity=0.351  Sum_probs=53.1

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (622)
                      .|.|.++++++||.|++||+|++|.....                                                   
T Consensus        95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~  174 (415)
T PRK11556         95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE  174 (415)
T ss_pred             cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence            48999999999999999999999976310                                                   


Q ss_pred             --------------------eeeEecCCCeeEEEEeccCCCeecccCC--eEEEEec
Q 006995          255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQ--PIAITVE  289 (622)
Q Consensus       255 --------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~--~l~~i~~  289 (622)
                                          ...|.||++|+|..+.+..|+. |..|+  +|+.|..
T Consensus       175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~-V~~g~~~~l~~i~~  230 (415)
T PRK11556        175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQ-ISSGDTTGIVVITQ  230 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCce-ecCCCCceeEEEec
Confidence                                1269999999999999999999 99984  6777653

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=95.38  E-value=0.016  Score=53.02  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=37.6

Q ss_pred             ceeeEe-eeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995          227 GNIAKW-RKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (622)
Q Consensus       227 g~i~~w-~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~  270 (622)
                      |.|+-+ +.++|+.|++|+.++.||+-|+..+|.||.+|+|.+++
T Consensus        39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN   83 (131)
T COG0509          39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN   83 (131)
T ss_pred             CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence            445443 33688999999999999999999999999999998875

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=95.36  E-value=0.015  Score=61.37  Aligned_cols=26  Identities=31%  Similarity=0.681  Sum_probs=20.0

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecc
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETD  252 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetd  252 (622)
                      .|.| +|+|++||.|++||+|++++++
T Consensus        29 ~G~v-~~~v~~G~~V~kG~~L~~ld~~   54 (328)
T PF12700_consen   29 SGRV-SVNVKEGDKVKKGQVLAELDSS   54 (328)
T ss_dssp             -EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred             CEEE-EEEeCCcCEECCCCEEEEEECh
Confidence            4899 9999999999999999999884

...

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=95.12  E-value=0.067  Score=47.15  Aligned_cols=47  Identities=23%  Similarity=0.229  Sum_probs=38.9

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCC
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG  148 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g  148 (622)
                      |.-.+-.|++||+|.+||.|++-+ +-....|-|+.+|+|..+.-...
T Consensus        39 G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~~~~~   85 (101)
T PF13375_consen   39 GAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIEKRPI   85 (101)
T ss_pred             CCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEeeeEc
Confidence            344567899999999999999986 35688999999999998865543

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=94.80  E-value=0.063  Score=54.97  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=31.4

Q ss_pred             eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus       130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      +.|+||++|+|..+++..|+. |..|++|+.|.+..
T Consensus        89 ~~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~~~  123 (265)
T TIGR00999        89 VEVRSPFDGYITQKSVTLGDY-VAPQAELFRVADLG  123 (265)
T ss_pred             EEEECCCCeEEEEEEcCCCCE-eCCCCceEEEEcCC
Confidence            357999999999999999999 99999999997544

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=94.39  E-value=0.11  Score=52.96  Aligned_cols=55  Identities=27%  Similarity=0.329  Sum_probs=48.3

Q ss_pred             eeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          229 IAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       229 i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      +.+..++-||.|++||+|+.|+.    .+|.||.+|+|..+ +++|-. |..|-.|+.|..
T Consensus       174 i~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~-V~~G~Ki~dIDP  228 (256)
T TIGR03309       174 IVTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLT-VTEGLKIGDVDP  228 (256)
T ss_pred             EEeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCC-cCCCCEEEEECC
Confidence            45568999999999999999975    79999999999887 688987 999999998853

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=94.28  E-value=0.095  Score=49.27  Aligned_cols=45  Identities=22%  Similarity=0.183  Sum_probs=39.8

Q ss_pred             EEe---cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995          106 WRK---KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (622)
Q Consensus       106 w~v---~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~  150 (622)
                      ||+   ++|..|.+||.++-+|+-|+..+|.+|.+|.|.+|.-+-.+.
T Consensus        83 v~veLPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En  130 (172)
T KOG3373|consen   83 VYVELPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN  130 (172)
T ss_pred             EEEEcCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence            555   578899999999999999999999999999999997766554

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=93.90  E-value=0.19  Score=52.69  Aligned_cols=56  Identities=20%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             EEEEEecCCCeeecCCeEEEEEe--cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          103 IAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       103 i~~w~v~~Gd~V~~g~~l~~vet--dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      +.++.++.||.|++||+|++|-.  .....+|.||.+|+|.-+....  . |..|+.|+.|
T Consensus       229 ~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~~~~--~-v~~G~~l~~i  286 (287)
T cd06251         229 LLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRNNLP--L-VNEGDALFHI  286 (287)
T ss_pred             EEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEecCCC--c-cCCCCEEEEe
Confidence            56889999999999999999954  2334789999999996555444  4 7899998876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=93.83  E-value=0.096  Score=46.18  Aligned_cols=43  Identities=26%  Similarity=0.273  Sum_probs=37.7

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~  270 (622)
                      |.-.+-.|++||+|++||.|++.+. -....|.|+.+|+|..|.
T Consensus        39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~   81 (101)
T PF13375_consen   39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE   81 (101)
T ss_pred             CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence            5566789999999999999999974 557899999999999984

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=93.65  E-value=0.097  Score=53.56  Aligned_cols=39  Identities=38%  Similarity=0.472  Sum_probs=34.2

Q ss_pred             EEEEecCCCeeecCCeEEEEEecce--eeEEecCCcEEEEEEEe
Q 006995          104 AKWRKKEGDKIEIGDILCEIETDKA--TVEFESLEEGFLAKILV  145 (622)
Q Consensus       104 ~~w~v~~Gd~V~~g~~l~~vetdK~--~~~i~s~~~G~i~~~~~  145 (622)
                      -+..|+|||+|+.||+|++   ||-  .+-++||.+|+|++|..
T Consensus        41 Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R   81 (257)
T PF05896_consen   41 PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR   81 (257)
T ss_pred             ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence            5789999999999999996   776  45689999999999876

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=93.26  E-value=0.25  Score=52.12  Aligned_cols=58  Identities=24%  Similarity=0.205  Sum_probs=47.0

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEe---cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIET---DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vet---dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      +=+...+++.||.|++||+|++|=.   +....+|.||.+|+|.-+...  -. |..|+.|+.|
T Consensus       237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~~~--p~-v~~G~~l~~i  297 (298)
T cd06253         237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLREY--PL-VYEGSLVARI  297 (298)
T ss_pred             CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEeecC--Ce-ecCCceEEEe
Confidence            3466888999999999999999843   456778999999999765544  45 8899998876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=93.23  E-value=0.24  Score=53.63  Aligned_cols=58  Identities=29%  Similarity=0.430  Sum_probs=45.8

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      |=+..++++.||.|++||+|++|=.    +....+|.||.+|+|.-+...  -. |..|+.|+.|
T Consensus       297 ~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~~~--~~-V~~G~~l~~I  358 (359)
T cd06250         297 GGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARASR--RF-VRAGDELAKI  358 (359)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEecCC--cc-ccCCCeEEEe
Confidence            4477899999999999999999853    334555799999999665444  44 8899999876

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=93.02  E-value=0.17  Score=51.85  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=30.2

Q ss_pred             eEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       257 ~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      .|.||++|+|..+.+..|+. |..|++|+.|.+.
T Consensus        90 ~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~~  122 (265)
T TIGR00999        90 EVRSPFDGYITQKSVTLGDY-VAPQAELFRVADL  122 (265)
T ss_pred             EEECCCCeEEEEEEcCCCCE-eCCCCceEEEEcC
Confidence            47999999999999999999 9999999998653

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=92.35  E-value=0.48  Score=50.35  Aligned_cols=59  Identities=20%  Similarity=0.280  Sum_probs=46.4

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      +=+...+++.||.|++||+|++|=.    .....+|.||.+|+|.-....  -. |..|+.|+.|.
T Consensus       252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~--~~-v~~G~~l~~i~  314 (316)
T cd06252         252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPP--GL-VRRGDCLAVLA  314 (316)
T ss_pred             CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCC--Cc-cCCCCEEEEEe
Confidence            3467899999999999999999843    245668999999999755433  34 78888888774

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=92.22  E-value=0.4  Score=50.26  Aligned_cols=58  Identities=17%  Similarity=0.224  Sum_probs=45.6

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecc--cceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETD--KATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetd--K~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      +-+..+.++.||.|++||+|++|...  ....+|.||.+|+|..+.  ..-. |..|+.|+.|
T Consensus       227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~-v~~G~~l~~i  286 (287)
T cd06251         227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPL-VNEGDALFHI  286 (287)
T ss_pred             CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCc-cCCCCEEEEe
Confidence            34567899999999999999999652  234689999999996654  3444 8999999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=92.17  E-value=0.37  Score=50.84  Aligned_cols=58  Identities=29%  Similarity=0.232  Sum_probs=47.7

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEec---ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIET---DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet---dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      +=+...+++.||.|++||+|++|-.   +....+|.||.+|+|..+.  ..-. |..|+.|+.|
T Consensus       237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~-v~~G~~l~~i  297 (298)
T cd06253         237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPL-VYEGSLVARI  297 (298)
T ss_pred             CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCe-ecCCceEEEe
Confidence            4477888999999999999999965   4456789999999997764  4455 8999999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=92.16  E-value=0.4  Score=51.24  Aligned_cols=57  Identities=25%  Similarity=0.454  Sum_probs=45.6

Q ss_pred             EEEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          102 NIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       102 ~i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      =+....++.||.|++||+|++|=.    .....+|.||.+|+|.-+...  -. |..|+.|+.|
T Consensus       264 Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~~~--~~-V~~Gd~l~~i  324 (325)
T TIGR02994       264 GLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARHFP--GL-IKSGDCIAVL  324 (325)
T ss_pred             eEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEeCC--Cc-cCCCCEEEEe
Confidence            356789999999999999999943    224678999999999775444  45 8899999876

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=92.02  E-value=0.22  Score=43.57  Aligned_cols=33  Identities=30%  Similarity=0.458  Sum_probs=30.2

Q ss_pred             EEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995          131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus       131 ~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      .|.||++|+|..+.++.|+. |..|++|+.|.+.
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEV-VSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCE-ECCCCEEEEEEcc
Confidence            47899999999999999999 9999999999765

>COG3608 Predicted deacylase [General function prediction only]

Probab=91.58  E-value=0.49  Score=50.22  Aligned_cols=61  Identities=21%  Similarity=0.350  Sum_probs=49.0

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEec---ceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETD---KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetd---K~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      .++=++...|+.||.|++||+|+.|-..   +...||.|+.+|+|..+....  . ++.|+.++.+.
T Consensus       262 p~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~--~-v~~Gdl~~~v~  325 (331)
T COG3608         262 PAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR--L-VQPGDLLKVVG  325 (331)
T ss_pred             CCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc--c-cCCCCeeeeec
Confidence            3456789999999999999999998754   789999999999998776543  3 66776666653

>COG3608 Predicted deacylase [General function prediction only]

Probab=91.47  E-value=0.55  Score=49.84  Aligned_cols=61  Identities=21%  Similarity=0.351  Sum_probs=49.8

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecc---cceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETD---KATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetd---K~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      ++-+++.+++.||.|++||+|+.|-..   +...||.|+.+|+|..+.-.-  . ++.|+.++++..
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~--~-v~~Gdl~~~v~~  326 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR--L-VQPGDLLKVVGR  326 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc--c-cCCCCeeeeecc
Confidence            466899999999999999999998765   778899999999998875322  2 777777777654

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=90.96  E-value=0.62  Score=50.48  Aligned_cols=59  Identities=27%  Similarity=0.406  Sum_probs=46.9

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEec----ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .+=+...+++.||.|++||+|++|-.    +....+|.||.+|+|..+.  ..-. |..|+.|+.|
T Consensus       296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~-V~~G~~l~~I  358 (359)
T cd06250         296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRF-VRAGDELAKI  358 (359)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCcc-ccCCCeEEEe
Confidence            35578899999999999999999854    2334457999999997664  4555 9999999876

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=90.61  E-value=0.82  Score=48.62  Aligned_cols=59  Identities=22%  Similarity=0.262  Sum_probs=47.3

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEec----ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      +-+....++.||.|++||+|++|-.    .....+|.||.+|+|.-+..  .-. |..|+.|+.|.
T Consensus       252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~--~~~-v~~G~~l~~i~  314 (316)
T cd06252         252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRP--PGL-VRRGDCLAVLA  314 (316)
T ss_pred             CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeC--CCc-cCCCCEEEEEe
Confidence            4477889999999999999999865    24456899999999976643  344 88899998774

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=90.59  E-value=0.2  Score=52.09  Aligned_cols=35  Identities=34%  Similarity=0.405  Sum_probs=24.8

Q ss_pred             eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus       130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      +.|.++..|+|.+|++++|+. |+.|++|+.|+...
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~-VkkGq~L~~LD~~~   36 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQR-VKKGQVLARLDPTD   36 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEE-E-TTSECEEE--HH
T ss_pred             EEEeCCCCeEEEEEEccCcCE-EeCCCEEEEEEeec
Confidence            578999999999999999999 99999999998543

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=89.85  E-value=0.49  Score=44.62  Aligned_cols=48  Identities=27%  Similarity=0.306  Sum_probs=35.4

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecceeeE-EecCCcEEEEEEEec
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVE-FESLEEGFLAKILVP  146 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~-i~s~~~G~i~~~~~~  146 (622)
                      .||..+-..+.+||+|.+||.|+-+.|-|-.+. +.||++|+|.=+.--
T Consensus        87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~  135 (150)
T PF09891_consen   87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEI  135 (150)
T ss_dssp             EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEE
T ss_pred             ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEec
Confidence            366677889999999999999999999999876 899999999766433

; PDB: 3D4R_D.

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=89.50  E-value=0.38  Score=49.31  Aligned_cols=45  Identities=29%  Similarity=0.479  Sum_probs=35.9

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccce--eeEecCCCeeEEEEeccCCCe
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKAT--LEFECLEEGYLAKILAPEGSK  276 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~--~~i~s~~~G~v~~i~~~~g~~  276 (622)
                      |..-+.+|+|||+|+.||+|++   ||-.  +-+.||.+|+|.+|.-  |+.
T Consensus        38 g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R--G~r   84 (257)
T PF05896_consen   38 GMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR--GER   84 (257)
T ss_pred             CCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec--CCC
Confidence            3445678999999999999995   6654  5688999999999875  544

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=89.44  E-value=0.99  Score=48.22  Aligned_cols=58  Identities=24%  Similarity=0.369  Sum_probs=46.9

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEec----ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      +=+....++.||.|++||+|++|-.    .....+|.||.+|+|..+.  ..-. |..|+.|+.|
T Consensus       263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~-V~~Gd~l~~i  324 (325)
T TIGR02994       263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGL-IKSGDCIAVL  324 (325)
T ss_pred             CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCc-cCCCCEEEEe
Confidence            4467788999999999999999965    2245689999999998764  4455 8999999876

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=89.42  E-value=0.83  Score=47.88  Aligned_cols=55  Identities=18%  Similarity=0.251  Sum_probs=41.0

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEe--cceeeEEecCCcEEEEEEEecCCCccccCCCeE
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKILVPEGSKDVPVGQPI  158 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vet--dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l  158 (622)
                      +=+...+++.||.|++||+|++|=.  .....+|.||++|+|.-+...  -. |..|+.|
T Consensus       231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~--~~-v~~G~~l  287 (288)
T cd06254         231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT--LP-VRKGDPL  287 (288)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC--Cc-cCCCCcc
Confidence            4477899999999999999999832  244668999999999766443  23 5566554

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=89.34  E-value=0.41  Score=50.60  Aligned_cols=40  Identities=33%  Similarity=0.469  Sum_probs=33.8

Q ss_pred             EEEecCCCeeecCCeEEEEEecce--eeEEecCCcEEEEEEEecC
Q 006995          105 KWRKKEGDKIEIGDILCEIETDKA--TVEFESLEEGFLAKILVPE  147 (622)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~vetdK~--~~~i~s~~~G~i~~~~~~~  147 (622)
                      ...|++||.|++||+|+|   ||-  .+-++||.+|+|..|+--+
T Consensus        42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~   83 (447)
T COG1726          42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE   83 (447)
T ss_pred             cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence            567999999999999997   665  4679999999999986543

>PF13437 HlyD_3: HlyD family secretion protein

Probab=89.26  E-value=0.56  Score=40.93  Aligned_cols=32  Identities=28%  Similarity=0.427  Sum_probs=25.6

Q ss_pred             EecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          258 FECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       258 i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      |.||++|+|..+.++.|+. |..|++|+.|...
T Consensus         2 i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~   33 (105)
T PF13437_consen    2 IRAPFDGVVVSINVQPGEV-VSAGQPLAEIVDT   33 (105)
T ss_pred             EECCCCEEEEEEeCCCCCE-ECCCCEEEEEEcc
Confidence            6788888888888888887 8888888877654

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=89.14  E-value=0.51  Score=50.13  Aligned_cols=42  Identities=26%  Similarity=0.371  Sum_probs=35.2

Q ss_pred             EEEecceeeEEecCCc---EEEEEEEecCCCccccCCCeEEEEEcC
Q 006995          122 EIETDKATVEFESLEE---GFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus       122 ~vetdK~~~~i~s~~~---G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      .|+..--.+.|.++.+   |+|.++++++||. |+.|++|+.|+..
T Consensus         6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~-V~~G~~L~~ld~~   50 (327)
T TIGR02971         6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDR-VQAGQVLAELDSR   50 (327)
T ss_pred             eEeecCceEEecCCCCCCCcEEEEEEccCCCE-ecCCcEEEEecCc
Confidence            3444444567889999   9999999999999 9999999999764

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional

Probab=87.65  E-value=2.1  Score=56.23  Aligned_cols=35  Identities=29%  Similarity=0.407  Sum_probs=25.6

Q ss_pred             EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEE
Q 006995          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLA  141 (622)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~  141 (622)
                      ..+|++|+.|++||+||+.  |--+..|-+..+|+|.
T Consensus      2423 ~l~v~~g~~V~~g~~la~w--dp~~~piisE~~G~v~ 2457 (2836)
T PRK14844       2423 KLYVDEGGSVKIGDKVAEW--DPYTLPIITEKTGTVS 2457 (2836)
T ss_pred             EEEecCCCEecCCCEEEEE--cCCCcceEeecceEEE
Confidence            5789999999999999987  4445555555555543

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=87.44  E-value=1  Score=42.43  Aligned_cols=45  Identities=22%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEeccccee-eEecCCCeeEEEEe
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATL-EFECLEEGYLAKIL  270 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-~i~s~~~G~v~~i~  270 (622)
                      +|..+-..+.+|+.|.+||.|+.+.|-|-.+ -+.||.+|+|.-+.
T Consensus        88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~  133 (150)
T PF09891_consen   88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI  133 (150)
T ss_dssp             ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred             cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence            5677778889999999999999999999887 58999999998774

; PDB: 3D4R_D.

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=87.42  E-value=0.6  Score=38.85  Aligned_cols=24  Identities=38%  Similarity=0.572  Sum_probs=20.1

Q ss_pred             EEEEecCCCeeecCCeEEEEEecc
Q 006995          104 AKWRKKEGDKIEIGDILCEIETDK  127 (622)
Q Consensus       104 ~~w~v~~Gd~V~~g~~l~~vetdK  127 (622)
                      +.++++.||.|++||+||+|=++.
T Consensus        34 i~l~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   34 IELHKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             EEESS-TTSEEBTTSEEEEEEESS
T ss_pred             eEecCcCcCEECCCCeEEEEEcCC
Confidence            479999999999999999997653

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=86.70  E-value=0.67  Score=51.59  Aligned_cols=44  Identities=30%  Similarity=0.364  Sum_probs=35.9

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEe
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILV  145 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~  145 (622)
                      |.--+-.|++||+|..||+|++-.. -..+.|.||.+|+|+.|..
T Consensus        38 G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        38 GMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEec
Confidence            3345679999999999999998532 2578899999999999943

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=86.29  E-value=1.5  Score=46.06  Aligned_cols=55  Identities=16%  Similarity=0.216  Sum_probs=42.0

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEec--ccceeeEecCCCeeEEEEeccCCCeecccCCeE
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIET--DKATLEFECLEEGYLAKILAPEGSKDVAVGQPI  284 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet--dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l  284 (622)
                      +-+...+++.||.|++||+|++|-.  .....+|.||.+|+|.-+..  .-. |..|+.|
T Consensus       231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~~-v~~G~~l  287 (288)
T cd06254         231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TLP-VRKGDPL  287 (288)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CCc-cCCCCcc
Confidence            4478889999999999999999943  23456899999999977643  233 6666654

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=85.69  E-value=1.2  Score=49.85  Aligned_cols=35  Identities=11%  Similarity=0.126  Sum_probs=31.7

Q ss_pred             eeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995          129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus       129 ~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      ...|.++..|+|.++++++||. |+.|++|+.++..
T Consensus        59 ~~~vq~~~~G~v~~i~V~eG~~-V~~G~~L~~ld~~   93 (457)
T TIGR01000        59 LSKIQSTSNNAIKENYLKENKF-VKKGDLLVVYDNG   93 (457)
T ss_pred             eEEEEcCCCcEEEEEEcCCCCE-ecCCCEEEEECch
Confidence            4578899999999999999999 9999999999644

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=85.66  E-value=1.1  Score=48.89  Aligned_cols=43  Identities=26%  Similarity=0.361  Sum_probs=32.7

Q ss_pred             EEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995          122 EIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus       122 ~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      .|....-...|.++.+|+|.++++++||. |+.|++|+.++...
T Consensus        36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~-V~kG~~L~~ld~~~   78 (423)
T TIGR01843        36 KVVPSGNVKVVQHLEGGIVREILVREGDR-VKAGQVLVELDATD   78 (423)
T ss_pred             EEEECCCeeecccCCCcEEEEEEeCCCCE-ecCCCeEEEEccch
Confidence            34455556667888888888888888888 88888888886543

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=85.56  E-value=0.73  Score=51.33  Aligned_cols=44  Identities=34%  Similarity=0.420  Sum_probs=35.6

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEe
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILV  145 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~  145 (622)
                      |.--+-.|++||+|..||.|++-... .+..|.||.+|+|+.|..
T Consensus        39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR   82 (448)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence            33456799999999999999964332 468899999999999943

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=85.20  E-value=1.2  Score=49.16  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=32.1

Q ss_pred             eeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995          129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus       129 ~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      ...|.++..|+|.++++++||. |+.|++|+.|+...
T Consensus        58 ~~~v~a~~~G~V~~i~V~eG~~-V~kGq~L~~l~~~~   93 (421)
T TIGR03794        58 VDTIQSPGSGVVIDLDVEVGDQ-VKKGQVVARLFQPE   93 (421)
T ss_pred             eeEEECCCCeEEEEEECCCcCE-ECCCCEEEEECcHH
Confidence            4488999999999999999999 99999999997653

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=85.18  E-value=0.74  Score=47.84  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=23.6

Q ss_pred             eeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       256 ~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      ..|.++..|+|.+|+|++|+. |+.|++|+.|..
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~-VkkGq~L~~LD~   34 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQR-VKKGQVLARLDP   34 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEE-E-TTSECEEE--
T ss_pred             EEEeCCCCeEEEEEEccCcCE-EeCCCEEEEEEe
Confidence            468899999999999999999 999999999953

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=84.82  E-value=15  Score=36.54  Aligned_cols=52  Identities=23%  Similarity=0.302  Sum_probs=40.0

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeE
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPI  284 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l  284 (622)
                      +.|.. .+++|+.+++||.+..++-. .++++--|.+   .++.++.|+. |..|+.+
T Consensus       150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~k-V~~Getv  201 (206)
T PRK05305        150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQK-VVAGETV  201 (206)
T ss_pred             cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCE-EEcccEE
Confidence            45554 45899999999999999976 3555555554   2789999999 9999854

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=84.48  E-value=1.3  Score=49.40  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=37.8

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEec
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA  271 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~  271 (622)
                      .|...+..|++||+|+.||+|++-... ...-|.||.+|+|.+|..
T Consensus        37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence            366677899999999999999987643 467899999999999953

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=84.27  E-value=1.1  Score=50.01  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=34.7

Q ss_pred             EEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEE
Q 006995          104 AKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL  144 (622)
Q Consensus       104 ~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~  144 (622)
                      .+-.|++||+|+.||.|++-+ ......|.||.+|+|++|.
T Consensus        43 ~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        43 AEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            457899999999999999873 3368999999999999885

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=83.87  E-value=2.6  Score=44.37  Aligned_cols=43  Identities=21%  Similarity=0.308  Sum_probs=32.6

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEe--cceeeEEecCCcEEEEEE
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKI  143 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vet--dK~~~~i~s~~~G~i~~~  143 (622)
                      +=|....++.||.|++||+|++|-.  .....++.||.+|+|.-+
T Consensus       239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            3366788999999999999998853  123456899999998665

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=83.50  E-value=1.3  Score=49.40  Aligned_cols=43  Identities=26%  Similarity=0.400  Sum_probs=36.6

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~  270 (622)
                      |...+..|++||+|+.||.|++-... ....|.||.+|+|.+|.
T Consensus        39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~   81 (448)
T PRK05352         39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN   81 (448)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence            56667899999999999999966543 46789999999999994

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=83.03  E-value=1.2  Score=37.06  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=22.2

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEeccc
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDK  253 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK  253 (622)
                      -+.=+.++++.||.|++||+|++|-++.
T Consensus        30 ~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   30 PAVGIELHKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred             cCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence            3455788999999999999999998764

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=82.34  E-value=1.2  Score=38.07  Aligned_cols=25  Identities=40%  Similarity=0.803  Sum_probs=19.6

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEec
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIETD  126 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vetd  126 (622)
                      .++ +|++++||.|++||+|++++-+
T Consensus        45 ~~v-~~~~~dG~~v~~g~~i~~i~G~   69 (88)
T PF02749_consen   45 LEV-EWLVKDGDRVEPGDVILEIEGP   69 (88)
T ss_dssp             EEE-EESS-TT-EEETTCEEEEEEEE
T ss_pred             EEE-EEEeCCCCCccCCcEEEEEEeC
Confidence            344 7999999999999999999853

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=80.49  E-value=1.7  Score=48.45  Aligned_cols=43  Identities=21%  Similarity=0.214  Sum_probs=36.2

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~  270 (622)
                      |.-.+..|++||+|+.||+|++.+ ......|.||.+|+|.+|.
T Consensus        40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            445567899999999999999984 3357899999999999984

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=80.40  E-value=1.2  Score=42.00  Aligned_cols=38  Identities=24%  Similarity=0.291  Sum_probs=34.7

Q ss_pred             CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEecc
Q 006995          235 NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP  272 (622)
Q Consensus       235 ~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~  272 (622)
                      ++|-.|.+||-++-+|.=|+..+|.+|.+|+|.+|.-+
T Consensus        89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~  126 (172)
T KOG3373|consen   89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEK  126 (172)
T ss_pred             CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccc
Confidence            56788999999999999999999999999999999643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	622
3b8k_A	239	Structure Of The Truncated Human Dihydrolipoyl Acet		7e-47
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		2e-37
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		6e-29
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		8e-28
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		4e-27
1y8n_B	128	Crystal Structure Of The Pdk3-L2 Complex Length = 1		8e-26
1y8n_B	128	Crystal Structure Of The Pdk3-L2 Complex Length = 1		3e-22
1fyc_A	106	Inner Lipoyl Domain From Human Pyruvate Dehydrogena		2e-24
1fyc_A	106	Inner Lipoyl Domain From Human Pyruvate Dehydrogena		7e-22
3crk_C	87	Crystal Structure Of The Pdhk2-L2 Complex. Length =		2e-23
3crk_C	87	Crystal Structure Of The Pdhk2-L2 Complex. Length =		4e-21
2dne_A	108	Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain		3e-23
2dne_A	108	Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain		7e-22
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		5e-21
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		4e-17
1zy8_L	229	The Crystal Structure Of Dihydrolipoamide Dehydroge		8e-21
1dpc_A	243	Crystallographic And Enzymatic Investigations On Th		1e-19
1dpd_A	243	Crystallographic And Enzymatic Investigations On Th		5e-19
3rqc_A	224	Crystal Structure Of The Catalytic Core Of The 2-Ox		7e-19
1eaa_A	243	Atomic Structure Of The Cubic Core Of The Pyruvate		7e-19
1dpb_A	243	Crystallographic And Enzymatic Investigations On Th		4e-18
3l60_A	250	Crystal Structure Of Branched-Chain Alpha-Keto Acid		2e-16
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		6e-16
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		4e-07
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		1e-06
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		6e-05
1pmr_A	80	Lipoyl Domain From The Dihydrolipoyl Succinyltransf		2e-04
1pmr_A	80	Lipoyl Domain From The Dihydrolipoyl Succinyltransf		6e-04

>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239

Iteration: 1
 Score =  185 bits (469), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 103/218 (47%), Positives = 135/218 (61%), Gaps = 13/218 (5%)
Query: 409 FEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDI 466
           F D P + IR+VIA+RL++SKQ  PH               RKEL +  +  +K+SVND 
Sbjct: 12  FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDF 71
Query: 467 VIKAVAVALKNVPEANAYWD---VEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSI 523
           +IKA A+A   VPEAN+ W    + +  +V     D+S+AV+T  GL+TPIV NA  K +
Sbjct: 72  IIKASALACLKVPEANSSWMDTVIRQNHVV-----DVSVAVSTPAGLITPIVFNAHIKGV 126
Query: 524 SAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGN 583
             I+ +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G   
Sbjct: 127 ETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASE 186
Query: 584 QVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621
             + P   +D  +   V + M++TLS DHRV +G VG 
Sbjct: 187 DKLVP---ADNEKGFDVASMMSVTLSCDHRVVDGAVGA 221

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 204/422 (48%), Gaps = 41/422 (9%)
Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
            ++P +   +++G I KW    GD++   DV+CE++ DKA +E     +G + +IL PEG
Sbjct: 5   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 64
Query: 275 SKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEV-------------KGEK-ETHHDSKDV 320
           +    VGQ + IT++ PG     +N    G E              K EK +    +   
Sbjct: 65  TV-ATVGQTL-ITLDAPG----YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPA 118
Query: 321 VKVQKGSFTKI--SPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISS 378
            + + G   ++   PS +    E G+D   +Q +G  G +LK D+ A +  G   +  ++
Sbjct: 119 AEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAA 178
Query: 379 HTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXX 438
             +    +  P T+    P ++  +           + IR+ IA+ ++ SK   PH    
Sbjct: 179 EEKAAPAAAKPATTEGEFPETREKM-----------SGIRRAIAKAMVHSKHTAPHVTLM 227
Query: 439 XXXXXXXXXXFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLC 495
                      RK+ K    +   K++    V+KA+  AL+  P  N   D E  EI+  
Sbjct: 228 DEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQK 287
Query: 496 DAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSIS 555
              +I IA  T++GL+ P++++AD+K I A++ E+ ELAEKAR GKL P E +G + +I+
Sbjct: 288 HYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTIT 347
Query: 556 NLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVF 615
           N+G      F  +IN P+  IL +GR   + E  I  DG    A +  + L+LS DHR+ 
Sbjct: 348 NIGSAGGQWFTPVINHPEVAILGIGR---IAEKPIVRDGEIVAAPM--LALSLSFDHRMI 402
Query: 616 EG 617
           +G
Sbjct: 403 DG 404

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 116/216 (53%), Gaps = 11/216 (5%)
Query: 410 EDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRK----ELKEKHNTKVSVND 465
           ++ P   +RK IA+ +  SKQ  PH              +R       K++    ++   
Sbjct: 19  KEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFA 78
Query: 466 IVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISA 525
             IKAVA ALK  P+ N+ W  +K  I+    I+ISIA+A    L  P+++NAD+KSI  
Sbjct: 79  FFIKAVAQALKEFPQLNSTWAGDK--IIEHANINISIAIAAGDLLYVPVIKNADEKSIKG 136
Query: 526 ISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQV 585
           I+ E+ ELA KAR GKL+  + +GGTF++++ G F   Q   IIN PQA IL V   + V
Sbjct: 137 IAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQV--ESIV 194
Query: 586 VEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621
             PVI  D     AV   +NL LS DHR+ +G + G
Sbjct: 195 KRPVIIDD---MIAVRDMVNLCLSIDHRILDGLLAG 227

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 13/215 (6%)
Query: 411 DFPNTQ-----IRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE---KHNTKVS 462
           +FP T+     IR+ IA+ ++ SK   PH               RK+ K    +   K++
Sbjct: 11  EFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLT 70
Query: 463 VNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKS 522
               V+KA+  AL+  P  N   D E  EI+     +I IA  T++GL+ P++++AD+K 
Sbjct: 71  FLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKP 130
Query: 523 ISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRG 582
           I A++ E+ ELAEKAR GKL P E +G + +I+N+G      F  +IN P+  IL +GR 
Sbjct: 131 IFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGR- 189
Query: 583 NQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEG 617
             + E  I  DG    A +  + L+LS DHR+ +G
Sbjct: 190 --IAEKPIVRDGEIVAAPM--LALSLSFDHRMIDG 220

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 114/210 (54%), Gaps = 11/210 (5%)
Query: 413 PNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE----KHNTKVSVNDIVI 468
           P T++RK +A RLLE+K +T                 RK+  E    +H  ++      +
Sbjct: 8   PMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYV 67
Query: 469 KAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528
           KAV  ALK  PE NA   ++  ++V  +  D+S+AV+T +GL+TP++R+ D   ++ I  
Sbjct: 68  KAVVEALKRYPEVNA--SIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEK 125
Query: 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP 588
           ++KELA K R GKL   +  GG F+I+N G+F       IINPPQ+ IL +   + + + 
Sbjct: 126 KIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGM---HAIKDR 182
Query: 589 VIGSDGNETPAVVTKMNLTLSADHRVFEGK 618
            +  +G     ++  M L LS DHR+ +G+
Sbjct: 183 PMAVNGQ--VEILPMMYLALSYDHRLIDGR 210

>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128

Iteration: 1
 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 67/92 (72%)
Query: 77  HFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLE 136
           +F  S  P H  V +PALSPTM+ G + +W KK G+K+  GD+L EIETDKAT+ FE  E
Sbjct: 18  YFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQE 77
Query: 137 EGFLAKILVPEGSKDVPVGQPIAITVEDADDI 168
           EG+LAKILVPEG++DVP+G P+ I VE   DI
Sbjct: 78  EGYLAKILVPEGTRDVPLGTPLCIIVEKEADI 109

>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 62/88 (70%)
Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYL 266
           S  PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  EEGYL
Sbjct: 22  SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYL 81
Query: 267 AKILAPEGSKDVAVGQPIAITVEDPGDV 294
           AKIL PEG++DV +G P+ I VE   D+
Sbjct: 82  AKILVPEGTRDVPLGTPLCIIVEKEADI 109

>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 66/90 (73%)
Query: 79  SSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEG 138
           S+   P H  V +PALSPTM+ G + +W KK G+K+  GD+L EIETDKAT+ FE  EEG
Sbjct: 2   SNMSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEG 61
Query: 139 FLAKILVPEGSKDVPVGQPIAITVEDADDI 168
           +LAKILVPEG++DVP+G P+ I VE   DI
Sbjct: 62  YLAKILVPEGTRDVPLGTPLCIIVEKEADI 91

>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 61/85 (71%)
Query: 210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKI 269
           PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  EEGYLAKI
Sbjct: 7   PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKI 66
Query: 270 LAPEGSKDVAVGQPIAITVEDPGDV 294
           L PEG++DV +G P+ I VE   D+
Sbjct: 67  LVPEGTRDVPLGTPLCIIVEKEADI 91

>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 63/85 (74%)
Query: 84  PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI 143
           P H  V +PALSPTM+ G + +W KK G+K+  GD+L EIETD AT+ FE  EEG+LAKI
Sbjct: 3   PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKI 62
Query: 144 LVPEGSKDVPVGQPIAITVEDADDI 168
           LVPEG++DVP+G P+ I VE   DI
Sbjct: 63  LVPEGTRDVPLGTPLCIIVEKEADI 87

>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 60/85 (70%)
Query: 210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKI 269
           PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETD AT+ FE  EEGYLAKI
Sbjct: 3   PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKI 62
Query: 270 LAPEGSKDVAVGQPIAITVEDPGDV 294
           L PEG++DV +G P+ I VE   D+
Sbjct: 63  LVPEGTRDVPLGTPLCIIVEKEADI 87

>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase Length = 108

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 64/81 (79%)
Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           V +P+LSPTM  G IA+W KKEGDKI  GD++ E+ETDKATV FESLEE ++AKILV EG
Sbjct: 10  VPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEG 69
Query: 149 SKDVPVGQPIAITVEDADDIQ 169
           ++DVP+G  I ITV   +DI+
Sbjct: 70  TRDVPIGAIICITVGKPEDIE 90

>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase Length = 108

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 60/83 (72%)
Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P+LSPTM  G IA+W K EGDKI  GD+I E+ETDKAT+ FE LEE Y+AKIL  EG++
Sbjct: 12  LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTR 71
Query: 277 DVAVGQPIAITVEDPGDVGTVKN 299
           DV +G  I ITV  P D+   KN
Sbjct: 72  DVPIGAIICITVGKPEDIEAFKN 94

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 63/87 (72%)
Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           MP+LSPTM +GNI KW KKEG+ +  GD LCEIETDKA V  ++ ++G LAKI+V EGSK
Sbjct: 12  MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71
Query: 151 DVPVGQPIAITVEDADDIQHIPATIAG 177
           ++ +G  I + VE+ +D +H+    +G
Sbjct: 72  NIRLGSLIGLIVEEGEDWKHVSGPSSG 98

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           MP+LSPTM +GNI KW K EG+ +  GD +CEIETDKA +  +  ++G LAKI+  EGSK
Sbjct: 12  MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71
Query: 277 DVAVGQPIAITVEDPGD 293
           ++ +G  I + VE+  D
Sbjct: 72  NIRLGSLIGLIVEEGED 88

>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 113/227 (49%), Gaps = 10/227 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
           + P    D       E+ P T++ ++ A  L  S  N PH              FR   K
Sbjct: 1   IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
            + EK   K++V  +++KA A  LK +P+ N+        ++    + I  AV T  GL+
Sbjct: 61  AVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
            P++RN DQKS+  ++ E  ELAEKAR+ KL     QG  F+IS+LG      F  I+N 
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEG 617
           P+  IL V + +  ++PV   DG    P ++  + L+LS DHRV +G
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDHRVIDG 221

>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 10/227 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
           + P    D       E+ P T++ ++ A  L  S  N PH              FR   K
Sbjct: 1   IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
            + EK   K++V  +++KA A  LK +P+ N+        ++    + I  AV T  GL+
Sbjct: 61  AVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
            P++RN DQKS+  ++ E  ELAEKAR+ KL     QG  F+I++LG      F  I+N 
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEG 617
           P+  IL V + +  ++PV   DG    P ++  + L+LS DHRV  G
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDHRVING 221

>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 23/226 (10%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELK 454
           ++PG +  LE+           +R++I  ++ ++KQ  PH                   K
Sbjct: 1   MAPGREEILEMHG---------LRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK 51
Query: 455 EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPI 514
            + N KV+V   + + V   LK  P  NA +D  +   +L    +I IAV T  GL   +
Sbjct: 52  AR-NRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFV 110
Query: 515 VRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQA 574
           +++AD+KS+  IS E+ + A +AR  KL   E Q  TF+I+N+G         IIN P+ 
Sbjct: 111 IKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEV 170
Query: 575 GILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVG 620
            IL V R       ++  +G +       M L+LS DHR+ +G V 
Sbjct: 171 AILGVHR-------ILEREGRKY------MYLSLSCDHRLIDGAVA 203

>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 10/227 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
           + P    D       E+ P T++ ++ A  L  S  N PH              FR   K
Sbjct: 1   IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
            + +K   K++V  +++KA A  LK +P+ N+        ++    + I  AV T  GL+
Sbjct: 61  AVAKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
            P++RN DQKS+  ++ E  ELAEKAR+ KL     QG  F+IS+LG      F  I+N 
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEG 617
           P+  IL V + +  ++PV   DG    P ++  + L+LS DHRV  G
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDHRVING 221

>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 10/227 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
           + P    D       E+ P T++ ++ A  L  S  N PH              FR   K
Sbjct: 1   IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
            + EK   K++V  +++KA A  LK +P+ N+        ++    + I  AV T  GL+
Sbjct: 61  AVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
            P++RN DQKS+  ++ E  ELAEKAR+ KL     QG  F+IS+LG      F  I+N 
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEG 617
           P+  IL V + +  ++PV   DG    P ++  + L+LS D RV  G
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDCRVING 221

>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 15/158 (9%)
Query: 466 IVIKAVAVALKNVPEANAYWDVEKGE---IVLCDAIDISIAVATEKGLMTPIVRNADQKS 522
           + ++ + +ALK+    N+ W V+ GE   + +   + +    ATE+GL+ P+V +A  K+
Sbjct: 70  LTLRLLVIALKHNVILNSTW-VDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKN 128
Query: 523 ISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRG 582
              ++  V EL   AR G L P E +G TF++SN G   VD    +IN P+A IL +G  
Sbjct: 129 TRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLG-- 186
Query: 583 NQVVEP---VIGSDGNETPAVVTKMNLTLSADHRVFEG 617
              ++P   V+G +    P     M LT   DHRV +G
Sbjct: 187 --AIKPRPVVVGGEVVARP----TMTLTCVFDHRVVDG 218

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 9/242 (3%)
Query: 379 HTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXX 438
           H E   P P P+  T   P SK  + +     + P     K + + +  +    PH    
Sbjct: 2   HAEIMPPPPKPKDRTIPIPISKPPVFIGKDRTE-PVKGFHKAMVKTM-SAALKIPHFGYC 59
Query: 439 XXXXXXXXXXFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLC 495
                      R+ELK        K+S     +KA ++ L   P  NA  D     I   
Sbjct: 60  DEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYK 119
Query: 496 DAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSIS 555
            + +I IA+ TE+GL+ P V+N   +SI  I+ E+  L +   AG+L+ ++  GGTF++S
Sbjct: 120 ASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLS 179
Query: 556 NLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVF 615
           N+G         +I PP+  I A+G    +  P     G    A +  MN++ SADHR+ 
Sbjct: 180 NIGSIGGTYAKPVILPPEVAIGALGTIKAL--PRFNEKGEVCKAQI--MNVSWSADHRII 235
Query: 616 EG 617
           +G
Sbjct: 236 DG 237

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS 149
           +P +   + +G I KW  K GD++   D+LCE++ DKA VE  S  +G + +ILVPEG+
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 64

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
            ++P +   +++G I KW    GD++   DV+CE++ DKA +E     +G + +IL PEG
Sbjct: 4   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 63
Query: 275 SKDVAVGQPIAITVEDPG 292
           +    VGQ + IT++ PG
Sbjct: 64  TV-ATVGQTL-ITLDAPG 79

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P +   +++G I +W  KEGD +E    L E+ TDK TV+  S   G + KIL  EG  
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65
Query: 151 DVPVG 155
            VPVG
Sbjct: 66  -VPVG 69

>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS 149
           +P L  +++   +A W KK GD +   ++L EIETDK  +E  +  +G L  +L  EG+
Sbjct: 7   VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT 65

>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS 275
           +P L  ++    +A W K  GD +   +V+ EIETDK  LE     +G L  +L  EG+
Sbjct: 7   VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	622
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	1e-108
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	1e-93
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	1e-17
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	2e-78
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	2e-68
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	9e-42
2ii3_A	262	Lipoamide acyltransferase component of branched-C	7e-66
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	3e-62
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	1e-61
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	1e-60
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	5e-51
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	2e-50
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	7e-45
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	3e-49
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	3e-44
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	2e-48
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	1e-44
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	2e-43
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	1e-39
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	2e-32
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	9e-29
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	5e-23
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	1e-15
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	1e-13
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	2e-15
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	9e-13
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	2e-14
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	5e-13
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	4e-14
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	5e-13
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	3e-09
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	5e-08
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	6e-08
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	9e-08
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	7e-08
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	1e-07
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	3e-06
3rnm_E	58	Lipoamide acyltransferase component of branched-C	2e-05
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	2e-05
2coo_A	70	Lipoamide acyltransferase component of branched- c	3e-05
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	4e-05
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	7e-05
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	7e-05
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	9e-05
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	2e-04
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	7e-04

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  324 bits (834), Expect = e-108
 Identities = 109/218 (50%), Positives = 141/218 (64%), Gaps = 7/218 (3%)

Query: 406 SDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE--KHNTKVSV 463
           +  F D P + IR+VIA+RL++SKQ  PH YLS DV +  +L  RKEL +  +  +K+SV
Sbjct: 9   TGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISV 68

Query: 464 NDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSI 523
           ND +IKA A+A   VPEAN+ W      I     +D+S+AV+T  GL+TPIV NA  K +
Sbjct: 69  NDFIIKASALACLKVPEANSSWMDTV--IRQNHVVDVSVAVSTPAGLITPIVFNAHIKGV 126

Query: 524 SAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGN 583
             I+ +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G   
Sbjct: 127 ETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASE 186

Query: 584 QVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621
             + P    D  +   V + M++TLS DHRV +G VG 
Sbjct: 187 DKLVPA---DNEKGFDVASMMSVTLSCDHRVVDGAVGA 221

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  294 bits (754), Expect = 1e-93
 Identities = 119/421 (28%), Positives = 201/421 (47%), Gaps = 33/421 (7%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +   +++G I KW    GD++   DV+CE++ DKA +E     +G + +IL PEG+ 
Sbjct: 7   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66

Query: 277 DVAVGQPIAITVEDPGDVGTV------------KNSVTSGAEVKGEKETHHDSKDVVKVQ 324
              VGQ +  T++ PG                 + + T   E K +    +      +  
Sbjct: 67  -ATVGQTLI-TLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAG 124

Query: 325 KGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTS 384
                   PS +    E G+D   +Q +G  G +LK D+ A +  G   +  ++  +   
Sbjct: 125 PNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAP 184

Query: 385 PSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLD 444
            +  P T+    P                 + IR+ IA+ ++ SK   PH+ L  +  + 
Sbjct: 185 AAAKPATTEGEFPE-----------TREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVT 233

Query: 445 PLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDIS 501
            L++ RK+ K    +   K++    V+KA+  AL+  P  N   D E  EI+     +I 
Sbjct: 234 KLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIG 293

Query: 502 IAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFP 561
           IA  T++GL+ P++++AD+K I A++ E+ ELAEKAR GKL P E +G + +I+N+G   
Sbjct: 294 IAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAG 353

Query: 562 VDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621
              F  +IN P+  IL +GR     +P++  DG    A +  + L+LS DHR+ +G    
Sbjct: 354 GQWFTPVINHPEVAILGIGRI--AEKPIV-RDGEIVAAPM--LALSLSFDHRMIDGATAQ 408

Query: 622 T 622
            
Sbjct: 409 K 409

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 85.0 bits (211), Expect = 1e-17
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
             +P +   + +G I KW  K GD++   D+LCE++ DKA VE  S  +G + +ILVPEG
Sbjct: 5   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 64

Query: 149 SKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSE 208
           +    VGQ +        +           A+ +E++ T    +K      +A       
Sbjct: 65  TV-ATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEA 123

Query: 209 LPPRVVLEMPA 219
            P R V+ MP+
Sbjct: 124 GPNRRVIAMPS 134

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  247 bits (634), Expect = 2e-78
 Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 13/233 (5%)

Query: 392 STAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRK 451
           S A + G           +  P   +   +A ++  S +  P    S +V+   LL  R 
Sbjct: 2   SLAAARGGVGAGP-----DVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRD 56

Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWD--VEKGEIVLCDAIDISIAVATEKG 509
                   +++   + ++ + +ALK+    N+ W    E  ++ +   + +    ATE+G
Sbjct: 57  RFVS-AAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERG 115

Query: 510 LMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAII 569
           L+ P+V +A  K+   ++  V EL   AR G L P E +G TF++SN G   VD    +I
Sbjct: 116 LLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVI 175

Query: 570 NPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622
           N P+A IL +G       PV+   G         M LT   DHRV +G     
Sbjct: 176 NHPEAAILGLGAIKP--RPVV-VGGEVVARPT--MTLTCVFDHRVVDGAQVAQ 223

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  215 bits (550), Expect = 7e-66
 Identities = 72/247 (29%), Positives = 110/247 (44%), Gaps = 9/247 (3%)

Query: 378 SHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYL 437
            H E   P P P+  T   P SK            P     K + + +  + +  PH   
Sbjct: 1   GHAEIMPPPPKPKDRTIPIPISKPP-VFIGKDRTEPVKGFHKAMVKTMSAALK-IPHFGY 58

Query: 438 SSDVVLDPLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVL 494
             +V L  L+  R+ELK        K+S     +KA ++ L   P  NA  D     I  
Sbjct: 59  CDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITY 118

Query: 495 CDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSI 554
             + +I IA+ TE+GL+ P V+N   +SI  I+ E+  L +   AG+L+ ++  GGTF++
Sbjct: 119 KASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTL 178

Query: 555 SNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRV 614
           SN+G         +I PP+  I A+G       P     G    A +  MN++ SADHR+
Sbjct: 179 SNIGSIGGTYAKPVILPPEVAIGALGTI--KALPRFNEKGEVCKAQI--MNVSWSADHRI 234

Query: 615 FEGKVGG 621
            +G    
Sbjct: 235 IDGATVS 241

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score =  205 bits (523), Expect = 3e-62
 Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 8/216 (3%)

Query: 410 EDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVNDI 466
           E+ P T++ ++ A  L  S  N PH+       +  L +FR   K   EK   K++V  +
Sbjct: 16  EEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPL 75

Query: 467 VIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAI 526
           ++KA A  LK +P+ N+        ++    + I  AV T  GL+ P++RN DQKS+  +
Sbjct: 76  LLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQL 135

Query: 527 SMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVV 586
           + E  ELAEKAR+ KL     QG  F+IS+LG      F  I+N P+  IL V +    +
Sbjct: 136 AAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKA--SM 193

Query: 587 EPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622
           +PV        P ++  + L+LS D RV  G     
Sbjct: 194 QPVW-DGKAFQPRLM--LPLSLSYDCRVINGAAAAR 226

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score =  202 bits (517), Expect = 1e-61
 Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 16/207 (7%)

Query: 413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVA 472
               +R++I  ++ ++KQ  PH  +  +V +  ++S     K   N KV+V   + + V 
Sbjct: 10  EMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK-ARNRKVTVTGFLARIVP 68

Query: 473 VALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKE 532
             LK  P  NA +D  +   +L    +I IAV T  GL   ++++AD+KS+  IS E+ +
Sbjct: 69  SILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISD 128

Query: 533 LAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGR-GNQVVEPVIG 591
            A +AR  KL   E Q  TF+I+N+G         IIN P+  IL V R   +       
Sbjct: 129 KASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILEREGRKY-- 186

Query: 592 SDGNETPAVVTKMNLTLSADHRVFEGK 618
                       M L+LS DHR+ +G 
Sbjct: 187 ------------MYLSLSCDHRLIDGA 201

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score =  201 bits (514), Expect = 1e-60
 Identities = 83/238 (34%), Positives = 130/238 (54%), Gaps = 18/238 (7%)

Query: 390 QTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSF 449
           + +    P   +  +     ++ P   +RK IA+ +  SKQ  PH ++  +V    L+ +
Sbjct: 4   KAAMPTPPVRSAAGD-----KEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRY 58

Query: 450 RKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVA 505
           R  +K+    +    ++     IKAVA ALK  P+ N+ W  +  +I+    I+ISIA+A
Sbjct: 59  RNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGD--KIIEHANINISIAIA 116

Query: 506 TEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF 565
               L  P+++NAD+KSI  I+ E+ ELA KAR GKL+  + +GGTF++++ G F   Q 
Sbjct: 117 AGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQS 176

Query: 566 CAIINPPQAGILAVGRGNQVVE-PVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622
             IIN PQA IL V     +V+ PVI    ++  AV   +NL LS DHR+ +G + G 
Sbjct: 177 MGIINHPQAAILQVES---IVKRPVI---IDDMIAVRDMVNLCLSIDHRILDGLLAGK 228

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score =  175 bits (445), Expect = 5e-51
 Identities = 78/218 (35%), Positives = 120/218 (55%), Gaps = 27/218 (12%)

Query: 413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVI 468
           P T++RK +A RLLE+K +T  L   ++V + P++  RK+  E    +H  ++      +
Sbjct: 8   PMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYV 67

Query: 469 KAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528
           KAV  ALK  PE NA   ++  ++V  +  D+S+AV+T +GL+TP++R+ D   ++ I  
Sbjct: 68  KAVVEALKRYPEVNAS--IDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEK 125

Query: 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMF------PVDQFCAIINPPQAGILAVGRG 582
           ++KELA K R GKL   +  GG F+I+N G+F      P      IINPPQ+ IL  G  
Sbjct: 126 KIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTP------IINPPQSAIL--GMH 177

Query: 583 NQVVEPVIGSDGNETPAVVTK--MNLTLSADHRVFEGK 618
                P+   +G     V     M L LS DHR+ +G+
Sbjct: 178 AIKDRPMA-VNGQ----VEILPMMYLALSYDHRLIDGR 210

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score =  169 bits (431), Expect = 2e-50
 Identities = 54/124 (43%), Positives = 71/124 (57%)

Query: 62  VHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILC 121
            H        ++   +F  S  P H  V +PALSPTM+ G + +W KK G+K+  GD+L 
Sbjct: 3   SHHHHHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLA 62

Query: 122 EIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEA 181
           EIETDKAT+ FE  EEG+LAKILVPEG++DVP+G P+ I VE   DI             
Sbjct: 63  EIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTD 122

Query: 182 KEQS 185
            +  
Sbjct: 123 LKPQ 126

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score =  154 bits (392), Expect = 7e-45
 Identities = 47/113 (41%), Positives = 65/113 (57%)

Query: 200 SASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFE 259
                  S  PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE
Sbjct: 15  ENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFE 74

Query: 260 CLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKE 312
             EEGYLAKIL PEG++DV +G P+ I VE   D+    +   +       + 
Sbjct: 75  VQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQV 127

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score =  165 bits (420), Expect = 3e-49
 Identities = 47/97 (48%), Positives = 66/97 (68%)

Query: 81  SELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFL 140
           S   S   + MP+LSPTM +GNI KW KKEG+ +  GD LCEIETDKA V  ++ ++G L
Sbjct: 2   SSGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGIL 61

Query: 141 AKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAG 177
           AKI+V EGSK++ +G  I + VE+ +D +H+    +G
Sbjct: 62  AKIVVEEGSKNIRLGSLIGLIVEEGEDWKHVSGPSSG 98

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score =  152 bits (385), Expect = 3e-44
 Identities = 41/96 (42%), Positives = 59/96 (61%)

Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYL 266
           S     + + MP+LSPTM +GNI KW K EG+ +  GD +CEIETDKA +  +  ++G L
Sbjct: 2   SSGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGIL 61

Query: 267 AKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVT 302
           AKI+  EGSK++ +G  I + VE+  D   V    +
Sbjct: 62  AKIVVEEGSKNIRLGSLIGLIVEEGEDWKHVSGPSS 97

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score =  163 bits (415), Expect = 2e-48
 Identities = 56/106 (52%), Positives = 70/106 (66%)

Query: 81  SELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFL 140
           S   S   V +P+LSPTM  G IA+W KKEGDKI  GD++ E+ETDKATV FESLEE ++
Sbjct: 2   SSGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYM 61

Query: 141 AKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSS 186
           AKILV EG++DVP+G  I ITV   +DI+         + A   SS
Sbjct: 62  AKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAASGPSS 107

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score =  153 bits (389), Expect = 1e-44
 Identities = 51/105 (48%), Positives = 64/105 (60%)

Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYL 266
           S       + +P+LSPTM  G IA+W K EGDKI  GD+I E+ETDKAT+ FE LEE Y+
Sbjct: 2   SSGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYM 61

Query: 267 AKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEK 311
           AKIL  EG++DV +G  I ITV  P D+   KN     +   G  
Sbjct: 62  AKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAASGPS 106

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score =  149 bits (378), Expect = 2e-43
 Identities = 50/86 (58%), Positives = 63/86 (73%)

Query: 83  LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
            P H  V +PALSPTM+ G + +W KK G+K+  GD+L EIETD AT+ FE  EEG+LAK
Sbjct: 2   YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAK 61

Query: 143 ILVPEGSKDVPVGQPIAITVEDADDI 168
           ILVPEG++DVP+G P+ I VE   DI
Sbjct: 62  ILVPEGTRDVPLGTPLCIIVEKEADI 87

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score =  139 bits (351), Expect = 1e-39
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAK 268
            PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETD AT+ FE  EEGYLAK
Sbjct: 2   YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAK 61

Query: 269 ILAPEGSKDVAVGQPIAITVEDPGDV 294
           IL PEG++DV +G P+ I VE   D+
Sbjct: 62  ILVPEGTRDVPLGTPLCIIVEKEADI 87

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score =  123 bits (310), Expect = 2e-32
 Identities = 25/196 (12%), Positives = 43/196 (21%), Gaps = 19/196 (9%)

Query: 428 SKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
                     +  + +   L   K        K       I  +A  +   PE       
Sbjct: 26  QSVAQCTYNQTVQLDITAFLKTVK------KNKHKFYPAFIHILARLMNAHPEFRMAMK- 78

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHE 546
             GE+V+ D++     V  E+      + +              +            P  
Sbjct: 79  -DGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKG 137

Query: 547 FQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL 606
           F    F +S         F   +         V    +                   M L
Sbjct: 138 FIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYT----QGDK------VLMPL 187

Query: 607 TLSADHRVFEGKVGGT 622
            +   H V +G   G 
Sbjct: 188 AIQVHHAVCDGFHVGR 203

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213

 Score =  113 bits (283), Expect = 9e-29
 Identities = 26/197 (13%), Positives = 57/197 (28%), Gaps = 20/197 (10%)

Query: 428 SKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
             +      L+S + +  L           ++      ++I  +A A+    E       
Sbjct: 21  RHRLPCGFSLTSKIDITTLKKSLD------DSAYKFYPVMIYLIAQAVNQFDELRMAIK- 73

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHE 546
              E+++ D++D    V  ++      +       I    +    + E+ ++   L P  
Sbjct: 74  -DDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQG 132

Query: 547 FQGG-TFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMN 605
                  +IS L     D F   +                  P+I     +       + 
Sbjct: 133 VTPENHLNISALPWVNFDSFNLNVANFTDYFA----------PIITMAKYQQEGDRLLLP 182

Query: 606 LTLSADHRVFEGKVGGT 622
           L++   H V +G     
Sbjct: 183 LSVQVHHAVCDGFHVAR 199

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217

 Score = 96.7 bits (240), Expect = 5e-23
 Identities = 30/204 (14%), Positives = 53/204 (25%), Gaps = 30/204 (14%)

Query: 428 SKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
                P L ++S+V         K          S     + AV  A   +PE     D 
Sbjct: 23  RHFQNPQLSITSEVECGGARQRAKA------AGQSFFLHYLYAVLRAANEIPEFRYRIDP 76

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEK-------ARAG 540
           + G +VL D ID+   +  ++       R            E + + +          A 
Sbjct: 77  D-GRVVLYDTIDMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAE 135

Query: 541 KLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAG---ILAVGRGNQVVEPVIGSDGNET 597
                +   G   +S                       +L  G+        I  +G   
Sbjct: 136 NEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYPLLNAGK-------AIIREGR-- 186

Query: 598 PAVVTKMNLTLSADHRVFEGKVGG 621
                 M + ++  H   +G    
Sbjct: 187 ----LVMPIAMTIHHGFIDGHHLS 206

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P +   +++G I +W  KEGD +E    L E+ TDK TV+  S   G + KIL  EG  
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65

Query: 151 DVPVGQPIAI 160
            VPVG  +  
Sbjct: 66  -VPVGSTLLQ 74

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +   + +G I +W   EGD +E    + E+ TDK T++      G + KIL  EG  
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65

Query: 277 DVAVGQPIAI 286
            V VG  +  
Sbjct: 66  -VPVGSTLLQ 74

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +  +   + +  + +W  KEGD +   D +CE+++DKA+V   S  +G + K+       
Sbjct: 9   LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68

Query: 151 DVPVGQPIA-ITVEDADDIQH 170
              VG+P+  I  E   D++H
Sbjct: 69  -AYVGKPLVDIETEALKDLEH 88

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 63.5 bits (155), Expect = 9e-13
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +  +   + +  + +W   EGD +   D ICE+++DKA++      +G + K+       
Sbjct: 9   LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68

Query: 277 DVAVGQPIA-ITVEDPGDV 294
              VG+P+  I  E   D+
Sbjct: 69  -AYVGKPLVDIETEALKDL 86

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           +  P    +++ G +A W KK G+ ++  +++ +IETDK  +E  +  +G +A+I+  EG
Sbjct: 4   IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63

Query: 149 SKDVPVGQPIAITVEDA 165
              V  G+ +    E  
Sbjct: 64  D-TVLSGELLGKLTEGG 79

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 63.4 bits (155), Expect = 5e-13
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
            P    ++  G +A W K  G+ ++  ++I +IETDK  +E     +G +A+I+  EG  
Sbjct: 6   APTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGD- 64

Query: 277 DVAVGQPIAI 286
            V  G+ +  
Sbjct: 65  TVLSGELLGK 74

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 66.9 bits (164), Expect = 4e-14
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           + +P L  +++   +A W KK GD +   ++L EIETDK  +E  +  +G L  +L  EG
Sbjct: 5   ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64

Query: 149 SKDVPVGQPIAITVE 163
           +  V   Q +    E
Sbjct: 65  T-TVTSRQILGRLRE 78

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 63.8 bits (156), Expect = 5e-13
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P L  ++    +A W K  GD +   +V+ EIETDK  LE     +G L  +L  EG+ 
Sbjct: 7   VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT- 65

Query: 277 DVAVGQPIAITVE 289
            V   Q +    E
Sbjct: 66  TVTSRQILGRLRE 78

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score = 59.5 bits (145), Expect = 3e-09
 Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 8/173 (4%)

Query: 453 LKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGE--IVLCDAIDISIAVATEKG- 509
           LK     K+S   ++  A+  A+K  P  N ++ V  G+   +     ++ +A+  +   
Sbjct: 33  LKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKD 92

Query: 510 ----LMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF 565
               L+   ++  +           +++  +AR GKL   +F G T S++N G       
Sbjct: 93  GNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHS 152

Query: 566 CAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTK-MNLTLSADHRVFEG 617
              +   Q  I+  G      E    S+       + K + LT + DHR+ +G
Sbjct: 153 VPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQG 205

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSH 379
           ++SP+A+ ++ +H LDAS   A+GP G   K D L  ++  K + +I  H
Sbjct: 11  RLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQ-LKQTGKILEH 59

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA 285
            G + ++   +G  +E G    E+E  K  +     E G + K +   G+  +  G  +A
Sbjct: 13  AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVVA 70

Query: 286 -ITVEDPGDV 294
            + ++D    
Sbjct: 71  RLELDDLEHH 80

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 99  SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158
           S G + ++  ++G  +E G    E+E  K  +     E G + K +   G+  +  G  +
Sbjct: 12  SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVV 69

Query: 159 A-ITVEDADDIQH 170
           A + ++D +   H
Sbjct: 70  ARLELDDLEHHHH 82

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 323 VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG 370
           +++ +   +SP+ + L+ EH LDAS+++ +G  G L + DV   +   
Sbjct: 4   LEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKA 51

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA 285
            G + ++   +G  +E G    E+E  K  +     E G + K +   G+  +  G  +A
Sbjct: 25  AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVVA 82

Query: 286 -ITVEDPGDV 294
            + ++DP  V
Sbjct: 83  RLELDDPSKV 92

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 99  SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158
           S G + ++  ++G  +E G    E+E  K  +     E G + K +   G+  +  G  +
Sbjct: 24  SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVV 81

Query: 159 A-ITVEDADDIQH 170
           A + ++D   +  
Sbjct: 82  ARLELDDPSKVHP 94

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 76/492 (15%), Positives = 146/492 (29%), Gaps = 129/492 (26%)

Query: 122 EIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAG---- 177
           + ET +   +++ +   F    +     KDV       ++ E+ D I      ++G    
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 178 -GAEAKEQSSTHQDVKKEAVQETS---ASRINTSELPPRVVLEM--PALSPTMNQGNI-A 230
                 +Q    Q   +E ++       S I T +  P ++  M         N   + A
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 231 K---WRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLA--------K-ILAPEGSKDV 278
           K    R     K+            +A LE        +         K  +A +     
Sbjct: 128 KYNVSRLQPYLKLR-----------QALLELR--PAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 279 AVGQPIA-----ITV---EDPGDVGTVKNSVTSGAEVKGEKETHHDSK-----DVVKVQK 325
            V   +      + +     P  V  +   +    +      + H S        ++ + 
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 326 GSFTKISPSAK-LLILEHGLDASSLQASGPYG----TLL----KG--DVLAAIKSGKVSS 374
               K  P    LL+L +  +A +  A   +      LL    K   D L+A  +  +S 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 375 --RISSHTEK-----------TSPSPLPQTSTAVSPGSKSDLELS---DSFEDFPNT--Q 416
                + T               P  LP+     +P       LS   +S  D   T   
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-----RRLSIIAESIRDGLATWDN 346

Query: 417 IRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVI--KAVAVA 474
            + V   +L    +       SS  VL+P      E ++        + + +   +    
Sbjct: 347 WKHVNCDKLTTIIE-------SSLNVLEP-----AEYRKMF------DRLSVFPPSA--- 385

Query: 475 LKNVPEA--NAYWDVEKGEIVLCDAIDISIAVATE---KGLMTPIVRNADQKSIS--AIS 527
             ++P    +  W          D + +      +     L   + +   + +IS  +I 
Sbjct: 386 --HIPTILLSLIWFDVIKS----DVMVV----VNKLHKYSL---VEKQPKESTISIPSIY 432

Query: 528 MEVKELAEKARA 539
           +E+K   E   A
Sbjct: 433 LELKVKLENEYA 444

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 9e-06
 Identities = 70/548 (12%), Positives = 145/548 (26%), Gaps = 197/548 (35%)

Query: 6   LRQP-VIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRP----LSSTLAP 60
           +     ++ TL LF            T L++       FV+    +LR     L S +  
Sbjct: 55  IMSKDAVSGTLRLF-----------WTLLSKQEEMVQKFVEE---VLRINYKFLMSPIKT 100

Query: 61  EVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDIL 120
           E     +  +M      +       +            ++ N+   R +   K+     L
Sbjct: 101 EQRQPSMMTRM------YIEQRDRLYNDN------QVFAKYNV--SRLQPYLKLRQA--L 144

Query: 121 CEIETDKATVEFESLE--EGFLAK-ILVPEGSKDVPVGQPIA-----ITV---EDADDI- 168
            E+   K  +    ++   G   K  +  +      V   +      + +      + + 
Sbjct: 145 LELRPAKNVL----IDGVLGS-GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 169 ---QHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPR--VVLEMPALSPT 223
              Q +   I     ++   S++  ++  ++Q     R+  S+      +VL        
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVL-------- 250

Query: 224 MNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQP 283
                               +V    +   A     C       KIL             
Sbjct: 251 --------------L-----NV-QNAKAWNA-FNLSC-------KIL------------- 269

Query: 284 IAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHG 343
             +T        T    VT    +     TH     +        T       LL+    
Sbjct: 270 --LT--------TRFKQVTDF--LSAATTTH---ISLDHHSMT-LTP-DEVKSLLLKYLD 312

Query: 344 LDASSL--QASG--PY-----GTLLKGDV-----LAAIKSGKVSSRISSHTEKTSPSPLP 389
                L  +     P         ++  +        +   K+++ I S      P+   
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--- 369

Query: 390 QTSTAVSPGSKSDLELSDSFED---FP-NTQI-RKVIA--------------------RR 424
                         E    F+    FP +  I   +++                      
Sbjct: 370 --------------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 425 LLE--SKQNT---PHLYLSSDVVLDPLLSFRKELKEKHNT--KVSVNDIVIKAVAVALKN 477
           L+E   K++T   P +YL   V L+   +  + + + +N       +D++          
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP--------- 466

Query: 478 VPEANAYW 485
            P  + Y+
Sbjct: 467 -PYLDQYF 473

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 332 SPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK 368
            P+A+ L+ E G+  + +Q +G  G +LK DV+  ++
Sbjct: 3   MPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHLE 39

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 325 KGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSS 374
           KG  T  +P+ + L +E+ +  S +  SG  G +LK D+L  ++   +  
Sbjct: 4   KGRKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTLEH 53

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160
           K GDK+     L  +E DKA++E  +   G + ++ V  G K V  G  I I
Sbjct: 19  KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMI 69

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 324 QKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISS 378
            KG  T  +P+ + L +E+ +  S +  SG  G +LK D+L  ++    +    S
Sbjct: 11  IKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPS 65

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDI 168
           K GD IE+   L  +E+ KA++E  S + G +  + V  G K +  G  I I +E A   
Sbjct: 21  KTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAI-IELEPAAGA 78

Query: 169 Q 169
           +
Sbjct: 79  R 79

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160
           K GDK+     L  +E DKA++E  +   G + ++ V  G K V  G  I I
Sbjct: 23  KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMI 73

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 332 SPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPS 386
            P+A+ L  E G+D S ++ +GP G +   DV    +    ++  +   +    +
Sbjct: 8   MPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEETAKATAPAPAPKAVEKA 62

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD 167
             GD I + D L  +ETDKAT++  +   G + ++ V  G K +  G  I   VE    
Sbjct: 24  NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIV-VVEAEGT 80

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 332 SPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG 370
            PS +    E G+D   +Q +G  G +LK D+ A +  G
Sbjct: 10  MPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGG 48

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 163  EDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSP 222
            E+ D I        GG +A E +   Q    E  +       +  E P          S 
Sbjct: 1118 ENIDSIVAFQEA-QGGEKADEFARLIQVANAELKKSGDDKPQDVEEYPDD---AELLYSE 1173

Query: 223  TMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQ 282
                G   K     GD +E GD +  IE  K  +     + G + KIL   G   V  G 
Sbjct: 1174 -YT-GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGD 1230

Query: 283  PIAITV 288
             +A+ V
Sbjct: 1231 LVAVIV 1236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	622
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	100.0
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	100.0
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	100.0
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	100.0
2ii3_A	262	Lipoamide acyltransferase component of branched-C	100.0
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	100.0
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	100.0
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	100.0
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	100.0
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.94
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.79
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.78
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.76
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.76
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.72
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.67
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.66
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.66
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.65
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.65
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.65
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.64
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.63
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.62
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.61
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.59
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.57
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.56
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.54
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.5
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.48
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.47
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.43
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.41
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.4
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.31
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.31
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.3
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.3
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.26
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.19
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.18
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.18
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.15
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.14
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.13
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.08
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.06
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.05
3rnm_E	58	Lipoamide acyltransferase component of branched-C	99.04
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.04
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.04
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.03
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	99.02
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.01
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	98.98
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	98.98
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	98.96
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	98.95
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	98.95
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	98.95
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.93
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.92
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	98.85
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	98.83
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	98.82
2coo_A	70	Lipoamide acyltransferase component of branched- c	98.81
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.75
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.75
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.7
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.65
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.62
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.57
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.45
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.45
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.44
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.38
1hpc_A	131	H protein of the glycine cleavage system; transit	98.2
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.2
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.18
1hpc_A	131	H protein of the glycine cleavage system; transit	97.99
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	97.95
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	97.9
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	97.81
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	97.67
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	97.67
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	97.63
3klr_A	125	Glycine cleavage system H protein; antiparallel be	97.58
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.43
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.39
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.32
3klr_A	125	Glycine cleavage system H protein; antiparallel be	97.26
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	97.21
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	97.21
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	97.2
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	97.14
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.09
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.07
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	96.99
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	96.75
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	96.74
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	96.6
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	96.34
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	95.75
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	95.74
2xha_A	193	NUSG, transcription antitermination protein NUSG;	95.61
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	95.52
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	94.81
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	94.74
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	94.43
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	94.11
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	93.12
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	91.87
3lu0_D	1407	DNA-directed RNA polymerase subunit beta'; E. coli	91.77
2qj8_A	332	MLR6093 protein; structural genomics, joint center	91.3
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	91.02
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	89.68
2xha_A	193	NUSG, transcription antitermination protein NUSG;	88.64
2qj8_A	332	MLR6093 protein; structural genomics, joint center	88.5
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	87.96
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	87.21
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	85.21
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	84.91
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	84.24
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	81.72

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=1.4e-85  Score=714.33  Aligned_cols=393  Identities=28%  Similarity=0.437  Sum_probs=38.9

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~  292 (622)
                      .++.||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+. |++|++|++|.++++
T Consensus         3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~~   81 (428)
T 3dva_I            3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAPGY   81 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecCCc
Confidence            4689999999999999999999999999999999999999999999999999999999999998 999999999976554


Q ss_pred             CcCCcCC-CCCCC---cccC-CCCCCC--CCCcc--ccc--cccCCCccCChhHHhHHHHcCCCcccccccCCCCeeech
Q 006995          293 DVGTVKN-SVTSG---AEVK-GEKETH--HDSKD--VVK--VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKG  361 (622)
Q Consensus       293 ~~~~~~~-~~~~~---~~~~-~~~~~~--~~~~~--~~~--~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~  361 (622)
                      +...... .....   +... .+.+.+  ...+.  ...  .......++||+||+||+|+||||++|+||||+|||+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k~  161 (428)
T 3dva_I           82 ENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKE  161 (428)
T ss_dssp             ----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCTT
T ss_pred             cccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeHH
Confidence            4322110 00000   0000 000000  00000  000  011223579999999999999999999999999999999


Q ss_pred             hhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeee
Q 006995          362 DVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDV  441 (622)
Q Consensus       362 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~ev  441 (622)
                      ||++|+....... ++.+    +.+  ....+ + .+.  .......++++|+++|||.||++|.+||+++||||++.+|
T Consensus       162 DV~~~~~~~~~~~-~~~~----~~~--~~~~~-~-~~~--~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~ev  230 (428)
T 3dva_I          162 DIDAFLAGGAKPA-PAAA----EEK--AAPAA-A-KPA--TTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEA  230 (428)
T ss_dssp             TTTTTSCC------------------------------------------------------------------------
T ss_pred             HHHHHhhcccccc-cccc----ccc--cccCC-C-Ccc--ccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEE
Confidence            9999875321110 0000    000  00000 0 000  0011123678999999999999999999999999999999


Q ss_pred             echHHHHHHHHHhh---hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccC
Q 006995          442 VLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNA  518 (622)
Q Consensus       442 dvt~l~~~rk~~k~---~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a  518 (622)
                      |+|+|+++|+++|.   +.|.|+||++||+||+++||++||+||++|+++.++|++|++|||||||++++||++|+|+|+
T Consensus       231 Dvt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a  310 (428)
T 3dva_I          231 DVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHA  310 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eHHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccC
Confidence            99999999999873   468899999999999999999999999999874445999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCc
Q 006995          519 DQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETP  598 (622)
Q Consensus       519 ~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~  598 (622)
                      ++++|.+|++++++|++++|+|+|+++|++||||||||+||||+++|+||||+||+|||++|++.++|++.+|     ++
T Consensus       311 ~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g-----~i  385 (428)
T 3dva_I          311 DRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDG-----EI  385 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECC-----EE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988554     79


Q ss_pred             eEEcEEEEEEEeecccccCccCCC
Q 006995          599 AVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       599 ~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      ++|++|+|||+||||||||+++|+
T Consensus       386 ~~r~~m~lsls~DHRviDG~~aa~  409 (428)
T 3dva_I          386 VAAPMLALSLSFDHRMIDGATAQK  409 (428)
T ss_dssp             ------------------------
T ss_pred             EEeeeEEEEEEecccccchHHHHH
Confidence            999999999999999999999985

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-56  Score=454.84  Aligned_cols=209  Identities=37%  Similarity=0.548  Sum_probs=199.8

Q ss_pred             CCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhccccc
Q 006995          407 DSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEAN  482 (622)
Q Consensus       407 ~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN  482 (622)
                      ...+++|+++|||+||++|.+||+++||||++.+||+|+|+++|+++|+    +.|.|+||++||+||+++||++||+||
T Consensus        16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N   95 (256)
T 3mae_A           16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN   95 (256)
T ss_dssp             CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred             CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence            3578899999999999999999999999999999999999999999874    358899999999999999999999999


Q ss_pred             eeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCc
Q 006995          483 AYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPV  562 (622)
Q Consensus       483 ~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~  562 (622)
                      ++|+++  +|+++++||||+||++++||++|||+|++++||.+|++++++|++++|+|+|+++|++||||||||+|+||+
T Consensus        96 a~~~~~--~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~  173 (256)
T 3mae_A           96 STWAGD--KIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS  173 (256)
T ss_dssp             EEEETT--EEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTC
T ss_pred             hEEecC--EEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCc
Confidence            999875  499999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          563 DQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       563 ~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      ++|+|||||||+|||++|++.++|++.+|     +++++++|+|||+||||||||+++|+
T Consensus       174 ~~ftpIInppq~aIL~vG~i~~~pv~~~g-----~i~~r~~m~lsLs~DHRviDGa~aa~  228 (256)
T 3mae_A          174 VQSMGIINHPQAAILQVESIVKRPVIIDD-----MIAVRDMVNLCLSIDHRILDGLLAGK  228 (256)
T ss_dssp             SEEECCCCTTSSEEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHH
T ss_pred             cceEcccCCCCceEEEecccEEEEEEECC-----EEEEeEEEEEEEEEccccccHHHHHH
Confidence            99999999999999999999999988654     89999999999999999999999874

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=100.00  E-value=7.8e-56  Score=447.85  Aligned_cols=204  Identities=28%  Similarity=0.441  Sum_probs=195.7

Q ss_pred             cCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCC--CC
Q 006995          413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVE--KG  490 (622)
Q Consensus       413 p~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~--~~  490 (622)
                      |+++|||+||++|++||+++||||++.+||+|+|+++|+++|+ .|.|+||++||+||+++||++||+||++|+++  .+
T Consensus        18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-~~~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~   96 (250)
T 3l60_A           18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-AAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGP   96 (250)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-TCTTCCHHHHHHHHHHHHHHHCGGGSEEEECTTTSC
T ss_pred             CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHhCHHhhEEEeccCCCC
Confidence            9999999999999999999999999999999999999999964 57899999999999999999999999999864  24


Q ss_pred             eEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecC
Q 006995          491 EIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIIN  570 (622)
Q Consensus       491 ~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~  570 (622)
                      +|++|+++|||+||++++||++|||+|++++||.+|++++++|++++|+|+|+++|++||||||||+|+||+++|+||||
T Consensus        97 ~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIin  176 (250)
T 3l60_A           97 QVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVIN  176 (250)
T ss_dssp             EEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCCCCC
T ss_pred             eEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEeeeC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          571 PPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       571 ~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      |||+|||++|++.++|++.+|     +++++++|+|||+||||||||+++|+
T Consensus       177 ppq~aIL~vG~i~~~pv~~~g-----~i~~r~~m~lsLs~DHRviDGa~aa~  223 (250)
T 3l60_A          177 HPEAAILGLGAIKPRPVVVGG-----EVVARPTMTLTCVFDHRVVDGAQVAQ  223 (250)
T ss_dssp             TTCSEEEEECCCEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHH
T ss_pred             CCCceEEEecceEEEeEEECC-----EEEEEEEeEEEEEecccccCHHHHHH
Confidence            999999999999999988755     79999999999999999999999874

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=100.00  E-value=1.9e-55  Score=444.80  Aligned_cols=210  Identities=32%  Similarity=0.426  Sum_probs=199.6

Q ss_pred             CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh---hCCCCccHHHHHHHHHHHHHhhcccccee
Q 006995          408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAY  484 (622)
Q Consensus       408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~---~~g~k~t~~~~iikAva~Al~~~P~lN~~  484 (622)
                      .++++|+++|||.||++|.+||+++||||++.++|+|+|+++|+++|+   +.|.|+||++|++||+++||++||+||++
T Consensus        14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   93 (243)
T 1dpb_A           14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSS   93 (243)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred             CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence            467789999999999999999999999999999999999999999874   46889999999999999999999999999


Q ss_pred             ecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccc
Q 006995          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (622)
Q Consensus       485 ~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~  564 (622)
                      |+++.++|++|++||||+||++++||++|||++++++||.+|++++++|++++|+|+|+++|++||||||||+||||+++
T Consensus        94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~  173 (243)
T 1dpb_A           94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTA  173 (243)
T ss_dssp             ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSC
T ss_pred             EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccc
Confidence            98653469999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       565 ~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      |+|||||||+|||++|++.++|++.+|     +++++++|+|||+||||||||+++|+
T Consensus       174 ~tpIin~pq~aIl~vG~~~~~pv~~~g-----~i~~~~~m~lsls~DHRviDGa~aa~  226 (243)
T 1dpb_A          174 FTPIVNAPEVAILGVSKASMQPVWDGK-----AFQPRLMLPLSLSYDCRVINGAAAAR  226 (243)
T ss_dssp             CCCCCCTTSSEEEEECCCEEEEEECSS-----SEEEEEEEEEEEEEETTTSCHHHHHH
T ss_pred             eECccCCCCCeEEEccccEEEEEEECC-----eEEEEEEEEEEEEECcccccHHHHHH
Confidence            999999999999999999999988644     79999999999999999999999874

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=100.00  E-value=1.1e-55  Score=443.87  Aligned_cols=207  Identities=37%  Similarity=0.569  Sum_probs=197.7

Q ss_pred             ceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhcccccee
Q 006995          409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAY  484 (622)
Q Consensus       409 ~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~  484 (622)
                      .+++|+++|||.||++|.+||+++||||++.++|+|+|+++|+++|+    +.|.|+||++|++||+++||++||+||++
T Consensus         4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   83 (233)
T 1scz_A            4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence            45689999999999999999999999999999999999999999874    35789999999999999999999999999


Q ss_pred             ecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccc
Q 006995          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (622)
Q Consensus       485 ~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~  564 (622)
                      |+++  +|++|+++|||+||++++||++|||++++++||.+|++++++|++++|+|+|+++|++||||||||+||||+++
T Consensus        84 ~~~~--~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~  161 (233)
T 1scz_A           84 IDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM  161 (233)
T ss_dssp             EETT--EEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred             EeCC--EEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccc
Confidence            9965  49999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       565 ~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      |+|||||||+|||++|++.++|++.+|     +++++++|+|||+||||||||+++|+
T Consensus       162 ~tpIin~pq~aIl~vG~~~~~pv~~~g-----~i~~r~~m~lsls~DHRviDGa~aa~  214 (233)
T 1scz_A          162 STPIINPPQSAILGMHAIKDRPMAVNG-----QVEILPMMYLALSYDHRLIDGRESVG  214 (233)
T ss_dssp             CCCCCCTTCSEEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHH
T ss_pred             eEcccCCCCcEEEEccccEEEEEEECC-----EEEEEEEEEEEEEEcceeechHHHHH
Confidence            999999999999999999999988654     79999999999999999999999874

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=100.00  E-value=9.7e-55  Score=443.39  Aligned_cols=210  Identities=29%  Similarity=0.410  Sum_probs=198.4

Q ss_pred             CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh---hCCCCccHHHHHHHHHHHHHhhcccccee
Q 006995          408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAY  484 (622)
Q Consensus       408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~---~~g~k~t~~~~iikAva~Al~~~P~lN~~  484 (622)
                      .++++|+++|||.||++|.+|+ ++||||++.+||+|+|+++|+++|+   +.|.|+||++||+||+++||++||+||++
T Consensus        30 ~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~  108 (262)
T 2ii3_A           30 KDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNAS  108 (262)
T ss_dssp             CCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEE
T ss_pred             CcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEE
Confidence            4678999999999999999996 7999999999999999999999874   46889999999999999999999999999


Q ss_pred             ecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccc
Q 006995          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (622)
Q Consensus       485 ~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~  564 (622)
                      |+++.++|++|+++|||+||++++||++|||+|++++||.+|++++++|++++|+|+|+++|++||||||||+||||+++
T Consensus       109 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~  188 (262)
T 2ii3_A          109 VDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTY  188 (262)
T ss_dssp             ECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSC
T ss_pred             EeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccc
Confidence            98764579999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       565 ~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      |+|||||||+|||++|++.++|++..  ||  +++++.+|+|||+||||||||+++|+
T Consensus       189 ~tPIinppq~aIL~vG~~~~~pv~~~--~g--~i~~r~~m~lsls~DHRviDGa~aa~  242 (262)
T 2ii3_A          189 AKPVILPPEVAIGALGTIKALPRFNE--KG--EVCKAQIMNVSWSADHRIIDGATVSR  242 (262)
T ss_dssp             EECCCCTTCCEEEEECCCEEEEEECT--TS--CEEEEEEEEEEEEEETTTCCHHHHHH
T ss_pred             eECccCCCcceEEEcCccEEEEEEec--CC--cEEEEeeeEEEEEECcceecHHHHHH
Confidence            99999999999999999999988752  23  79999999999999999999999874

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=100.00  E-value=4.7e-54  Score=429.52  Aligned_cols=201  Identities=32%  Similarity=0.435  Sum_probs=190.8

Q ss_pred             CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecC
Q 006995          408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV  487 (622)
Q Consensus       408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~  487 (622)
                      ..+++|++++||+||++|.+||+++||||++.++|+|+|+++|+++|++ |.|+||++|++||+++||++||+||++|++
T Consensus         5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~-g~kls~~~~~ikA~~~Al~~~P~~N~~~~~   83 (224)
T 3rqc_A            5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR-NRKVTVTGFLARIVPSILKQYPYLNAIYDE   83 (224)
T ss_dssp             -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT-TCCCCHHHHHHHHHHHHHHHSGGGSBBCCS
T ss_pred             CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHhCHHhheEEeC
Confidence            3567899999999999999999999999999999999999999999755 889999999999999999999999999988


Q ss_pred             CCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceee
Q 006995          488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCA  567 (622)
Q Consensus       488 ~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tp  567 (622)
                      +.++|++|+++|||+||++++||++|||+|++++|+.+|++++++|++++|+|+|+++|++||||||||+|+||+++|+|
T Consensus        84 ~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~~tp  163 (224)
T 3rqc_A           84 TRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTP  163 (224)
T ss_dssp             STTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSEEEC
T ss_pred             CCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccceEe
Confidence            74569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          568 IINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       568 ii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      ||||||+|||++|++.++|+             +++|+|||+||||||||+++|+
T Consensus       164 iin~pq~aIl~vG~~~~~p~-------------r~~m~lsls~DHRviDGa~aa~  205 (224)
T 3rqc_A          164 IINYPEVAILGVHRILEREG-------------RKYMYLSLSCDHRLIDGAVATR  205 (224)
T ss_dssp             CCCTTBSEEEEECCCEEETT-------------EEECCEEEEEETTTSCHHHHHH
T ss_pred             ccCCCCceEEEecccEEECC-------------ceEEEEEEEeccceecHHHHHH
Confidence            99999999999999987532             6899999999999999999874

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=100.00  E-value=4.3e-54  Score=434.24  Aligned_cols=210  Identities=51%  Similarity=0.776  Sum_probs=197.2

Q ss_pred             CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhh--CCCCccHHHHHHHHHHHHHhhccccceee
Q 006995          408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEK--HNTKVSVNDIVIKAVAVALKNVPEANAYW  485 (622)
Q Consensus       408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~--~g~k~t~~~~iikAva~Al~~~P~lN~~~  485 (622)
                      .++++|+++|||.||++|.+||+++||||++.++|+|+|+++|+++|+.  .+.|+||++|++||+++||++||+||++|
T Consensus        11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~~kls~~~~~ikAv~~Al~~~P~~Na~~   90 (239)
T 3b8k_A           11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSW   90 (239)
T ss_dssp             SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTSSCCCHHHHHHHHHHHHHHHCCCSCTTS
T ss_pred             CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHhChHhhEEE
Confidence            3678899999999999999999999999999999999999999998742  23599999999999999999999999999


Q ss_pred             cCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccce
Q 006995          486 DVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF  565 (622)
Q Consensus       486 ~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~  565 (622)
                      +++.  |++|+++|||+||++++||++|+|++++++||.+|++++++|++++|+|+|+++|++||||||||+||+|+++|
T Consensus        91 ~~~~--i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~f  168 (239)
T 3b8k_A           91 MDTV--IRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNF  168 (239)
T ss_dssp             CCCS--SSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSC
T ss_pred             ECCE--EEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeE
Confidence            9765  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          566 CAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       566 tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      +|||||||+|||++|++.++|++. ..+|  +++++.+|+|||+||||||||+++|+
T Consensus       169 tpiin~pq~aIl~vG~~~~~pv~~-~~~g--~i~~r~~m~lsls~DHRviDGa~aa~  222 (239)
T 3b8k_A          169 SAIINPPQACILAIGASEDKLVPA-DNEK--GFDVASMMSVTLSCDHRVVDGAVGAQ  222 (239)
T ss_dssp             CCCCCTTSCCCCEECCCCCSCCCC-CSSS--SCCCCCCEEEEECCCCCSSCHHHHHH
T ss_pred             ECcCCCCceEEEECcccEEEEEEE-cCCC--cEEEEEEEEEEEEEcceeechHHHHH
Confidence            999999999999999999998774 1233  79999999999999999999999874

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.1e-42  Score=411.57  Aligned_cols=198  Identities=19%  Similarity=0.279  Sum_probs=158.6

Q ss_pred             HhhhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCC--CeEEEcCC
Q 006995          424 RLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEK--GEIVLCDA  497 (622)
Q Consensus       424 ~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~--~~i~~~~~  497 (622)
                      +|.+|+ ++||+|++.+||+|+|+++|+++|.    +.|.|+||++||+||+++||++||+||++|+++.  +.|+++++
T Consensus         1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~   79 (1113)
T 2xt6_A            1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH   79 (1113)
T ss_dssp             -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred             Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence            588995 8999999999999999999999874    3688999999999999999999999999998642  26999999


Q ss_pred             ccEEEEEecC--CC---eEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCC
Q 006995          498 IDISIAVATE--KG---LMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPP  572 (622)
Q Consensus       498 vnigiAV~~~--~G---L~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~p  572 (622)
                      |||||||+++  +|   |++|||||++++||.+|++++++|++++|+|+|+++|++||||||||+|+||+++|+||||||
T Consensus        80 vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinpp  159 (1113)
T 2xt6_A           80 TNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQG  159 (1113)
T ss_dssp             CCEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTT
T ss_pred             ccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCC
Confidence            9999999997  66   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeccceeEEEEeeCCC-CCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          573 QAGILAVGRGNQVVEPVIGSD-GNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       573 q~ail~vG~~~~~~~~~~g~~-g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      |+|||++|++.++|++.++.+ +..+++++++|+||||||||||||+++|+
T Consensus       160 q~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~  210 (1113)
T 2xt6_A          160 QGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGD  210 (1113)
T ss_dssp             CSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHH
T ss_pred             CceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHH
Confidence            999999999998876643110 00168999999999999999999999874

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=100.00  E-value=4.2e-39  Score=320.37  Aligned_cols=180  Identities=14%  Similarity=0.103  Sum_probs=156.2

Q ss_pred             hHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCC
Q 006995          418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDA  497 (622)
Q Consensus       418 rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~  497 (622)
                      ||.--... . ..++||||++.++|+|+|+++|++.      ++||++|++||+++||++||++|++|+++  +|++|++
T Consensus        18 R~~~f~~f-~-~~~~P~~t~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~   87 (219)
T 1q23_A           18 RKEHFEAF-Q-SVAQCTYNQTVQLDITAFLKTVKKN------KHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWDS   87 (219)
T ss_dssp             THHHHHHH-T-TTTCEEEEEEEEEECHHHHHHHHHT------TCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESC
T ss_pred             CHHHHHHh-c-CCCCcEEEEEEEEEhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhChHhhEEEECC--EEEEecc
Confidence            44444444 2 3799999999999999999999764      89999999999999999999999999965  4999999


Q ss_pred             ccEEEEE-ecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcC-CCCC-CccCCCcEEEEeCCCCCccceeeecCCCc-
Q 006995          498 IDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAP-HEFQGGTFSISNLGMFPVDQFCAIINPPQ-  573 (622)
Q Consensus       498 vnigiAV-~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g-~l~~-~d~~ggtftISNlG~~G~~~~tpii~~pq-  573 (622)
                      ||||+|| ++++||++||++. +.+++.+|++++++|++++|+| +|++ +|+ ||||||||+|++|.+.+.+.+++|. 
T Consensus        88 v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~~~  165 (219)
T 1q23_A           88 VHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANMDN  165 (219)
T ss_dssp             CEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCCTT
T ss_pred             cCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCCcc
Confidence            9999999 9999999999996 6789999999999999999998 6976 899 9999999999987555555444332 


Q ss_pred             --eEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          574 --AGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       574 --~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                        ++||++|++.++    +   |      +.+|+|||+||||||||+++|+
T Consensus       166 ~~~pIi~~G~~~~~----~---~------r~~m~lsls~DHRvvDG~~aa~  203 (219)
T 1q23_A          166 FFAPVFTMGKYYTQ----G---D------KVLMPLAIQVHHAVCDGFHVGR  203 (219)
T ss_dssp             CCSCEEEECCCEEE----T---T------EEEEEEEEEEETTTCCHHHHHH
T ss_pred             ceeEEEecccEEEE----C---C------cEEEEEEEEEEchhhChHHHHH
Confidence              599999999864    2   2      6899999999999999999874

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=100.00  E-value=1.5e-38  Score=315.24  Aligned_cols=181  Identities=17%  Similarity=0.161  Sum_probs=157.0

Q ss_pred             hHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCC
Q 006995          418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDA  497 (622)
Q Consensus       418 rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~  497 (622)
                      ||.--.....  .++||+|++.++|+|+|+++|++.      ++|+++|++||+++||++||++|++|+++  +|++|++
T Consensus        13 R~~~f~~f~~--~~~P~~~~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~   82 (213)
T 3cla_A           13 RREHFEFYRH--RLPCGFSLTSKIDITTLKKSLDDS------AYKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVWDS   82 (213)
T ss_dssp             THHHHHHHHH--TSCCEEEEEEEEECHHHHHHHHTS------SCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESC
T ss_pred             cHHHHHHHhC--CCCceEEEEEEEEHHHHHHHHHHh------CCCHHHHHHHHHHHHHhhCHHhhEEEECC--EEEEEec
Confidence            4444444443  589999999999999999999753      89999999999999999999999999965  4999999


Q ss_pred             ccEEEEE-ecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcC-CCCC-CccCCCcEEEEeCCCCCccceeeecCCC--
Q 006995          498 IDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAP-HEFQGGTFSISNLGMFPVDQFCAIINPP--  572 (622)
Q Consensus       498 vnigiAV-~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g-~l~~-~d~~ggtftISNlG~~G~~~~tpii~~p--  572 (622)
                      ||||+|| ++++||++||+++ +.+++.+|++++++|++++|+| +|++ +|++||||||||+||++.+.|+...+.+  
T Consensus        83 v~igiAVf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~  161 (213)
T 3cla_A           83 VDPQFTVFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTD  161 (213)
T ss_dssp             CEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTT
T ss_pred             cceeEEEEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCc
Confidence            9999999 9999999999987 5789999999999999999996 9988 8999999999999998877665444433  


Q ss_pred             -ceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          573 -QAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       573 -q~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                       ..+|+++|++.++    +   |      +.+|+|||+||||||||+++|+
T Consensus       162 ~~~PIi~~G~~~~~----~---~------~~~m~lsls~DHRvvDG~~aa~  199 (213)
T 3cla_A          162 YFAPIITMAKYQQE----G---D------RLLLPLSVQVHHAVCDGFHVAR  199 (213)
T ss_dssp             CCSCEEEEECCEEE----T---T------EEEEEEEEEEETTTCCHHHHHH
T ss_pred             ccccEEEeeEEEEE----C---C------eEEEEEEEEEcccccChHHHHH
Confidence             2479999999864    2   2      6899999999999999999874

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.4e-37  Score=308.78  Aligned_cols=181  Identities=17%  Similarity=0.130  Sum_probs=157.2

Q ss_pred             hHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeec-CCCCeEEEcC
Q 006995          418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWD-VEKGEIVLCD  496 (622)
Q Consensus       418 rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~-~~~~~i~~~~  496 (622)
                      ||.--.....  .++||+|++.++|+|+|+++|++.      ++|+++|++||+++||++||++|++|+ ++  +|++|+
T Consensus        15 R~~~f~~f~~--~~~P~~~~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~--~i~~~~   84 (217)
T 2i9d_A           15 RKENFNFFRH--FQNPQLSITSEVECGGARQRAKAA------GQSFFLHYLYAVLRAANEIPEFRYRIDPDG--RVVLYD   84 (217)
T ss_dssp             THHHHHHHTT--CSBCEEEEEEEEECHHHHHHHHHT------TCCHHHHHHHHHHHHHHHSGGGGEEECTTS--CEEEES
T ss_pred             CHHHHHHHhC--CCCceEEEEEEEEhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhCHHhheEEcCCC--EEEEec
Confidence            4444444433  689999999999999999999864      899999999999999999999999998 54  499999


Q ss_pred             CccEEEEE-ecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHc-CCCCCC------ccCCCcEEEEeCCCCCccceeee
Q 006995          497 AIDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARA-GKLAPH------EFQGGTFSISNLGMFPVDQFCAI  568 (622)
Q Consensus       497 ~vnigiAV-~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~-g~l~~~------d~~ggtftISNlG~~G~~~~tpi  568 (622)
                      ++|||+|| ++++||++|++. +..+++.+|++++++|++++|+ |+|+++      |++||||||||+||++.+.|+..
T Consensus        85 ~i~igvAVf~t~~GL~~pv~~-~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~  163 (217)
T 2i9d_A           85 TIDMLSPIKIKENGKFFTTRF-PYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGT  163 (217)
T ss_dssp             CCEEEEEEECSTTSCEEEEEE-CCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCC
T ss_pred             ccCeEEEEEecCCceEeEEEe-cCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecC
Confidence            99999999 999999999996 5678999999999999999999 599995      99999999999999887777555


Q ss_pred             cCCC---ceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          569 INPP---QAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       569 i~~p---q~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      .+++   ..+||++|++.++    +   |      +.+|+|||+||||||||+++|+
T Consensus       164 ~~~g~~~~~PIi~~Gk~~~~----~---~------r~~m~lsls~DHRvvDG~~aa~  207 (217)
T 2i9d_A          164 QEKRSGNNYPLLNAGKAIIR----E---G------RLVMPIAMTIHHGFIDGHHLSL  207 (217)
T ss_dssp             BCSTTCCSSCEEEECCCEEE----T---T------EEEEEEEEEEETTTCCHHHHHH
T ss_pred             CCCCccceEEEEecceEEEE----C---C------cEEEEEEEEecchhhChHHHHH
Confidence            5444   2579999999754    1   2      6899999999999999999874

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.79  E-value=3.3e-19  Score=161.82  Aligned_cols=94  Identities=54%  Similarity=0.907  Sum_probs=82.1

Q ss_pred             ccccc-cCCCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC-ccc
Q 006995           75 VRHFS-SSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDV  152 (622)
Q Consensus        75 ~r~f~-~~~~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~-~~v  152 (622)
                      +|.|. .+.+++++.|+||++|++|++|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |
T Consensus        15 ~~~~~~~~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~-V   93 (128)
T 1y8o_B           15 ENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD-V   93 (128)
T ss_dssp             --------CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS-E
T ss_pred             ccccCccccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCee-e
Confidence            34444 3477889999999999999999999999999999999999999999999999999999999999999998 8 9


Q ss_pred             cCCCeEEEEEcCCcccc
Q 006995          153 PVGQPIAITVEDADDIQ  169 (622)
Q Consensus       153 ~~G~~l~~i~~~~~~~~  169 (622)
                      .+|++|+.|...++...
T Consensus        94 ~~G~~L~~i~~~~~~~~  110 (128)
T 1y8o_B           94 PLGTPLCIIVEKEADIS  110 (128)
T ss_dssp             ETTCEEEEEESSGGGGG
T ss_pred             cCCCEEEEEecCccchh
Confidence            99999999987655433

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.78  E-value=2.7e-19  Score=158.18  Aligned_cols=86  Identities=59%  Similarity=0.912  Sum_probs=80.9

Q ss_pred             CCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC-ccccCCCeEEE
Q 006995           82 ELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDVPVGQPIAI  160 (622)
Q Consensus        82 ~~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~-~~v~~G~~l~~  160 (622)
                      .++|++.|+||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |.+|++|+.
T Consensus         3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~-V~~G~~l~~   81 (108)
T 2dne_A            3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRD-VPIGAIICI   81 (108)
T ss_dssp             CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCS-EETTCEEEE
T ss_pred             CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCee-ecCCCEEEE
Confidence            35788999999999999999999999999999999999999999999999999999999999999999 8 999999999


Q ss_pred             EEcCCccc
Q 006995          161 TVEDADDI  168 (622)
Q Consensus       161 i~~~~~~~  168 (622)
                      |...+++.
T Consensus        82 i~~~~~~~   89 (108)
T 2dne_A           82 TVGKPEDI   89 (108)
T ss_dssp             EESCHHHH
T ss_pred             EecCccch
Confidence            98765443

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=3e-18  Score=148.87  Aligned_cols=83  Identities=53%  Similarity=0.866  Sum_probs=78.7

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccc-cCCCeEEEEE
Q 006995           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDV-PVGQPIAITV  162 (622)
Q Consensus        84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v-~~G~~l~~i~  162 (622)
                      .+.+.|+||++|++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. | .+|++|+.|.
T Consensus         5 ~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~-Vv~~G~~l~~i~   83 (98)
T 2dnc_A            5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK-NIRLGSLIGLIV   83 (98)
T ss_dssp             CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC-CEESSCEEEEEE
T ss_pred             cccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE-EcCCCCEEEEEe
Confidence            5678999999999999999999999999999999999999999999999999999999999999999 9 9999999998


Q ss_pred             cCCcc
Q 006995          163 EDADD  167 (622)
Q Consensus       163 ~~~~~  167 (622)
                      ..+++
T Consensus        84 ~~~~~   88 (98)
T 2dnc_A           84 EEGED   88 (98)
T ss_dssp             CTTSC
T ss_pred             cCCCc
Confidence            65543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.76  E-value=3.8e-18  Score=144.98  Aligned_cols=83  Identities=57%  Similarity=0.969  Sum_probs=78.4

Q ss_pred             CCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC-ccccCCCeEEEE
Q 006995           83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDVPVGQPIAIT  161 (622)
Q Consensus        83 ~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~-~~v~~G~~l~~i  161 (622)
                      +++++.++||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |..|++|+.|
T Consensus         2 ~~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~-V~~G~~l~~i   80 (87)
T 3crk_C            2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCII   80 (87)
T ss_dssp             CCCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCC-EETTCEEEEE
T ss_pred             CCcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeE-ECCCCEEEEE
Confidence            3667899999999999999999999999999999999999999999999999999999999999999 8 9999999999


Q ss_pred             EcCCc
Q 006995          162 VEDAD  166 (622)
Q Consensus       162 ~~~~~  166 (622)
                      ...++
T Consensus        81 ~~~~~   85 (87)
T 3crk_C           81 VEKEA   85 (87)
T ss_dssp             ESSST
T ss_pred             EcccC
Confidence            76443

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.72  E-value=1.6e-17  Score=142.97  Aligned_cols=80  Identities=24%  Similarity=0.418  Sum_probs=76.3

Q ss_pred             cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      +.+.|+||++|+++.+|+|.+|+|++||.|++||+||+||+||+..+|+||++|+|.++++++|+. |..|++|+.|...
T Consensus         3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~   81 (93)
T 1k8m_A            3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIETE   81 (93)
T ss_dssp             CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEECS
T ss_pred             cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence            458899999999999999999999999999999999999999999999999999999999999999 9999999999754


Q ss_pred             C
Q 006995          165 A  165 (622)
Q Consensus       165 ~  165 (622)
                      +
T Consensus        82 ~   82 (93)
T 1k8m_A           82 A   82 (93)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.67  E-value=9.3e-17  Score=133.73  Aligned_cols=76  Identities=28%  Similarity=0.560  Sum_probs=73.7

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      +.++||++|+++.+|+|.+|+|++||.|++||+||++|++|+..+|+||++|+|.++++++|+. |..|++|+.|..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence            5799999999999999999999999999999999999999999999999999999999999999 999999999854

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.66  E-value=2.4e-16  Score=142.98  Aligned_cols=86  Identities=52%  Similarity=0.952  Sum_probs=79.4

Q ss_pred             CCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC-eecccCCeEEE
Q 006995          208 ELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAI  286 (622)
Q Consensus       208 ~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~-~~v~vG~~l~~  286 (622)
                      ..+...++.||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+ . |.+|++|+.
T Consensus        23 ~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~-V~~G~~L~~  101 (128)
T 1y8o_B           23 SYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCI  101 (128)
T ss_dssp             CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS-EETTCEEEE
T ss_pred             cCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCee-ecCCCEEEE
Confidence            34556889999999999999999999999999999999999999999999999999999999999998 8 999999999


Q ss_pred             EecCCCCc
Q 006995          287 TVEDPGDV  294 (622)
Q Consensus       287 i~~~~~~~  294 (622)
                      |...+++.
T Consensus       102 i~~~~~~~  109 (128)
T 1y8o_B          102 IVEKEADI  109 (128)
T ss_dssp             EESSGGGG
T ss_pred             EecCccch
Confidence            98655443

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.66  E-value=1.4e-16  Score=140.79  Aligned_cols=85  Identities=54%  Similarity=0.860  Sum_probs=79.1

Q ss_pred             CCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC-eecccCCeEEE
Q 006995          208 ELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAI  286 (622)
Q Consensus       208 ~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~-~~v~vG~~l~~  286 (622)
                      ..|...++.||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |.+|++|+.
T Consensus         3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~-V~~G~~l~~   81 (108)
T 2dne_A            3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRD-VPIGAIICI   81 (108)
T ss_dssp             CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCS-EETTCEEEE
T ss_pred             CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCee-ecCCCEEEE
Confidence            35567889999999999999999999999999999999999999999999999999999999999998 8 999999999


Q ss_pred             EecCCCC
Q 006995          287 TVEDPGD  293 (622)
Q Consensus       287 i~~~~~~  293 (622)
                      |...+++
T Consensus        82 i~~~~~~   88 (108)
T 2dne_A           82 TVGKPED   88 (108)
T ss_dssp             EESCHHH
T ss_pred             EecCccc
Confidence            9765443

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.65  E-value=7.8e-18  Score=182.76  Aligned_cols=82  Identities=34%  Similarity=0.579  Sum_probs=0.0

Q ss_pred             cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      |.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||. |.+|++|+.|+++
T Consensus         1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~~~   79 (428)
T 3dva_I            1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAP   79 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence            346899999999999999999999999999999999999999999999999999999999999999 9999999999876


Q ss_pred             Ccc
Q 006995          165 ADD  167 (622)
Q Consensus       165 ~~~  167 (622)
                      +++
T Consensus        80 ~~~   82 (428)
T 3dva_I           80 GYE   82 (428)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            554

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=4.5e-16  Score=135.12  Aligned_cols=83  Identities=47%  Similarity=0.825  Sum_probs=77.7

Q ss_pred             CCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeec-ccCCeEEEEe
Q 006995          210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDV-AVGQPIAITV  288 (622)
Q Consensus       210 ~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v-~vG~~l~~i~  288 (622)
                      +...++.||++|++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. | .+|++|+.|.
T Consensus         5 ~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~-Vv~~G~~l~~i~   83 (98)
T 2dnc_A            5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK-NIRLGSLIGLIV   83 (98)
T ss_dssp             CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC-CEESSCEEEEEE
T ss_pred             cccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE-EcCCCCEEEEEe
Confidence            3557899999999999999999999999999999999999999999999999999999999999999 9 9999999997


Q ss_pred             cCCCC
Q 006995          289 EDPGD  293 (622)
Q Consensus       289 ~~~~~  293 (622)
                      ..+++
T Consensus        84 ~~~~~   88 (98)
T 2dnc_A           84 EEGED   88 (98)
T ss_dssp             CTTSC
T ss_pred             cCCCc
Confidence            65443

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.65  E-value=5.2e-16  Score=131.76  Aligned_cols=81  Identities=53%  Similarity=0.959  Sum_probs=76.5

Q ss_pred             CCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC-eecccCCeEEEEe
Q 006995          210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAITV  288 (622)
Q Consensus       210 ~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~-~~v~vG~~l~~i~  288 (622)
                      |...++.||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+ . |..|++|+.+.
T Consensus         3 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~-V~~G~~l~~i~   81 (87)
T 3crk_C            3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCIIV   81 (87)
T ss_dssp             CCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCC-EETTCEEEEEE
T ss_pred             CcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeE-ECCCCEEEEEE
Confidence            346789999999999999999999999999999999999999999999999999999999999999 8 99999999997


Q ss_pred             cCC
Q 006995          289 EDP  291 (622)
Q Consensus       289 ~~~  291 (622)
                      ..+
T Consensus        82 ~~~   84 (87)
T 3crk_C           82 EKE   84 (87)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            543

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.63  E-value=7.4e-16  Score=128.44  Aligned_cols=76  Identities=26%  Similarity=0.340  Sum_probs=72.9

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      .+.|+||++|++  +|+|.+|++++||.|++||+||+||++|+..+|.||++|+|.++++++|+. |..|++|+.|...
T Consensus         2 ~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~~   77 (80)
T 1qjo_A            2 VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE   77 (80)
T ss_dssp             EEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred             CeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-ECCCCEEEEEEcc
Confidence            468999999998  899999999999999999999999999999999999999999999999999 9999999999754

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.62  E-value=7.5e-16  Score=127.54  Aligned_cols=75  Identities=36%  Similarity=0.550  Sum_probs=73.0

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      ++++||++|+++.+|+|.+|++++||.|++||+||++|++|+..+|.||++|+|.++++++|+. |..|++|+.|.
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-ECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-ECCCCEEEEEE
Confidence            5799999999999999999999999999999999999999999999999999999999999999 99999999985

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.61  E-value=2e-17  Score=138.18  Aligned_cols=75  Identities=31%  Similarity=0.514  Sum_probs=72.9

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      +.++||++|+++.+|+|.+|+|++||.|++||+||+||+||+..+|+||++|+|.++++++|+. |..|++|+.|.
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~G~~l~~i~   77 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLR   77 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCC
T ss_pred             cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence            5689999999999999999999999999999999999999999999999999999999999999 99999999885

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.59  E-value=3.2e-15  Score=128.53  Aligned_cols=78  Identities=22%  Similarity=0.430  Sum_probs=74.5

Q ss_pred             ceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       212 ~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      ..++.||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|.||++|+|.++++++|+. |..|++|+.|...
T Consensus         4 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~   81 (93)
T 1k8m_A            4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIETE   81 (93)
T ss_dssp             CEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEECS
T ss_pred             ceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence            36789999999999999999999999999999999999999999999999999999999999999 9999999999643

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.57  E-value=7.2e-15  Score=122.24  Aligned_cols=75  Identities=25%  Similarity=0.362  Sum_probs=71.1

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      +.++||++|++  + +|.+|+|++||.|++||+|++||++|+..+|.||++|+|.++++++|+. |..|++|+.|...+
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~g~~l~~i~~~~   76 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECCC
T ss_pred             cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEecCC
Confidence            56899999996  7 9999999999999999999999999999999999999999999999999 99999999997543

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.56  E-value=8.9e-15  Score=121.66  Aligned_cols=76  Identities=28%  Similarity=0.579  Sum_probs=73.1

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      .++.||++++++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence            4689999999999999999999999999999999999999999999999999999999999999 999999999854

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.54  E-value=2.5e-15  Score=125.60  Aligned_cols=76  Identities=25%  Similarity=0.367  Sum_probs=72.5

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus        86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      .+.++||++| ++..|+|.+|++++||.|++||+||+||++|+..+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus         2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~   77 (81)
T 1gjx_A            2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEA   77 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECC
T ss_pred             cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE-eCCCCEEEEEEe
Confidence            4679999999 688999999999999999999999999999999999999999999999999999 999999999864

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.50  E-value=4.2e-15  Score=124.06  Aligned_cols=75  Identities=32%  Similarity=0.526  Sum_probs=72.2

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      .++.||++|+++..|+|.+|++++||.|++||+|++||+||+..+|.||++|+|.++++++|+. |..|++|+.+.
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~G~~l~~i~   77 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLR   77 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCC
T ss_pred             cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence            3688999999999999999999999999999999999999999999999999999999999999 99999999875

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.48  E-value=7.3e-14  Score=115.46  Aligned_cols=75  Identities=29%  Similarity=0.509  Sum_probs=72.3

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      .++.||++|+++..|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-ECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-ECCCCEEEEEE
Confidence            3688999999999999999999999999999999999999999999999999999999999999 99999999874

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.47  E-value=1.2e-13  Score=114.98  Aligned_cols=75  Identities=21%  Similarity=0.316  Sum_probs=71.5

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      .++.||+++.+  .|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+. |..|++|+.|...
T Consensus         3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~~   77 (80)
T 1qjo_A            3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE   77 (80)
T ss_dssp             EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred             eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-ECCCCEEEEEEcc
Confidence            46889999998  999999999999999999999999999999999999999999999999999 9999999999754

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.43  E-value=4.4e-13  Score=111.36  Aligned_cols=74  Identities=20%  Similarity=0.320  Sum_probs=69.8

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      .++.||++|.+  + +|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+. |..|++|+.|...
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~g~~l~~i~~~   75 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECC
T ss_pred             cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            36889999996  6 9999999999999999999999999999999999999999999999999 9999999998643

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.41  E-value=1.9e-14  Score=121.56  Aligned_cols=72  Identities=28%  Similarity=0.368  Sum_probs=67.9

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      +.|++|.+      |+|.+|++++||+|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|...+
T Consensus         3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVEG   74 (85)
T ss_dssp             SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BCTTSEEEEEECCS
T ss_pred             cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEEcCC
Confidence            46788988      88999999999999999999999999999999999999999999999999 99999999997543

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.40  E-value=2.4e-13  Score=113.49  Aligned_cols=75  Identities=28%  Similarity=0.416  Sum_probs=71.4

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      .++.||+++ ++..|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+. |..|++|+.+..
T Consensus         3 ~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~   77 (81)
T 1gjx_A            3 VELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEA   77 (81)
T ss_dssp             EECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECC
T ss_pred             EEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE-eCCCCEEEEEEe
Confidence            578899999 688999999999999999999999999999999999999999999999999999 999999999854

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.31  E-value=1.8e-12  Score=109.11  Aligned_cols=66  Identities=23%  Similarity=0.326  Sum_probs=62.1

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~  166 (622)
                      ..|+|.+|++++||.|++||+||+||++|+.++|+||++|+|.+++ ++|+. |..|++|+.|.....
T Consensus        12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~~G~~l~~i~~~~~   77 (84)
T 2kcc_A           12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LEAGCVVARLELDDL   77 (84)
T ss_dssp             SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CCTTCCCEEEECSCS
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-ECCCCEEEEEeCCCh
Confidence            5689999999999999999999999999999999999999999999 99999 999999999975443

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.31  E-value=5.1e-12  Score=102.70  Aligned_cols=64  Identities=25%  Similarity=0.315  Sum_probs=61.5

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      ..|+|.+|++++||.|++||+|++||++|...+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus         6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~   69 (72)
T 1z6h_A            6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLELSN   69 (72)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEEGG
T ss_pred             ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE-ECCCCEEEEEeC
Confidence            4699999999999999999999999999999999999999999999999999 999999999854

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.30  E-value=1.7e-12  Score=109.38  Aligned_cols=71  Identities=23%  Similarity=0.332  Sum_probs=66.5

Q ss_pred             eeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995          214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (622)
Q Consensus       214 ~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~  291 (622)
                      ++.+|.+      |+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+. |..|++|+.|...+
T Consensus         4 ~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            4 EVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVEG   74 (85)
T ss_dssp             CCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BCTTSEEEEEECCS
T ss_pred             EEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEEcCC
Confidence            5677877      89999999999999999999999999999999999999999999999999 99999999997543

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.30  E-value=5.7e-13  Score=114.63  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=29.1

Q ss_pred             CCCcceEEecCCCCCCC----ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCe
Q 006995           82 ELPSHTVVGMPALSPTM----SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQP  157 (622)
Q Consensus        82 ~~~~~~~~~~p~~g~~~----~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~  157 (622)
                      ...+...|.+|...+..    ..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+. |..|++
T Consensus        11 ~~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~   89 (94)
T 2jku_A           11 VDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT-VGEGDL   89 (94)
T ss_dssp             -------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC--------------------------------
T ss_pred             ccccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE-ECCCCE
Confidence            34556779999988764    5899999999999999999999999999999999999999999999999999 999999


Q ss_pred             EEEEE
Q 006995          158 IAITV  162 (622)
Q Consensus       158 l~~i~  162 (622)
                      |+.|+
T Consensus        90 L~~ie   94 (94)
T 2jku_A           90 LVELE   94 (94)
T ss_dssp             -----
T ss_pred             EEEEC
Confidence            99873

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=1.2e-11  Score=107.43  Aligned_cols=65  Identities=22%  Similarity=0.355  Sum_probs=61.6

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      ..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|. +++++|+. |..|++|+.|...+
T Consensus        24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~-V~~G~~l~~i~~~~   88 (100)
T 2dn8_A           24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV-LEAGCVVARLELDD   88 (100)
T ss_dssp             SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE-ECSSCEEEEECCSC
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE-ECCCCEEEEEEcCC
Confidence            4699999999999999999999999999999999999999999 99999999 99999999996543

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.19  E-value=5.2e-11  Score=97.06  Aligned_cols=62  Identities=31%  Similarity=0.482  Sum_probs=60.0

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      ..|+|.+|++++||.|++||+|++++++|+..+|.||++|+|.++++++|+. |..|++|+.|
T Consensus        12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-v~~g~~l~~i   73 (74)
T 2d5d_A           12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA-VDTGQPLIEL   73 (74)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred             CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEE
Confidence            4699999999999999999999999999999999999999999999999999 9999999987

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.18  E-value=3.2e-11  Score=100.24  Aligned_cols=57  Identities=30%  Similarity=0.482  Sum_probs=54.9

Q ss_pred             EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      +|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+. |..|++|+.|+
T Consensus        24 ~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~L~~i~   80 (80)
T 1bdo_A           24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVIE   80 (80)
T ss_dssp             CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEEC
T ss_pred             ccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-ECCCCEEEEEC
Confidence            4799999999999999999999999999999999999999999999 99999999873

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.18  E-value=5.4e-11  Score=97.90  Aligned_cols=63  Identities=29%  Similarity=0.379  Sum_probs=60.3

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      ..|+|.+|++++||.|++||+|++|+++|+..+|.||++|+|.++++++|+. |..|++|+.|+
T Consensus        15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~-v~~G~~l~~i~   77 (77)
T 1dcz_A           15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKIG   77 (77)
T ss_dssp             SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEEC
T ss_pred             CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE-ECCCCEEEEEC
Confidence            4589999999999999999999999999999999999999999999999999 99999999873

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.15  E-value=4.9e-11  Score=100.28  Aligned_cols=63  Identities=22%  Similarity=0.378  Sum_probs=60.2

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      .|+|.+|++++||.|++||+|++||++|+.++|.||.+|+|.+++ ++|+. |..|++|+.|...
T Consensus        13 ~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~~G~~l~~i~~~   75 (84)
T 2kcc_A           13 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LEAGCVVARLELD   75 (84)
T ss_dssp             SCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CCTTCCCEEEECS
T ss_pred             CEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-ECCCCEEEEEeCC
Confidence            589999999999999999999999999999999999999999999 99999 9999999999643

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.14  E-value=8.5e-11  Score=101.93  Aligned_cols=67  Identities=27%  Similarity=0.361  Sum_probs=63.1

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~  166 (622)
                      ..|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.+++++.|+. |..|++|+.|...+.
T Consensus        21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i~~~~~   87 (99)
T 2ejm_A           21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVEFEEEES   87 (99)
T ss_dssp             SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEE-ECTTCBCEEECCCCS
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCE-ECCCCEEEEEECCCc
Confidence            4699999999999999999999999999999999999999999999999999 999999999975443

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.13  E-value=1.1e-10  Score=94.59  Aligned_cols=63  Identities=24%  Similarity=0.324  Sum_probs=60.6

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      .|+|.+|++++||.|++||+|+++|++|...+|.||.+|+|.++++++|+. |..|++|+.|..
T Consensus         7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~   69 (72)
T 1z6h_A            7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLELSN   69 (72)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEEGG
T ss_pred             cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE-ECCCCEEEEEeC
Confidence            589999999999999999999999999999999999999999999999999 999999999854

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.08  E-value=3.1e-12  Score=154.51  Aligned_cols=61  Identities=31%  Similarity=0.407  Sum_probs=59.4

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      |+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.+|++++|+. |.+|++|++|.
T Consensus      1176 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~ 1236 (1236)
T 3va7_A         1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGDLVAVIV 1236 (1236)
T ss_dssp             EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred             EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCE-eCCCCEEEEeC
Confidence            89999999999999999999999999999999999999999999999999 99999999873

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}

Probab=99.06  E-value=6.6e-11  Score=85.66  Aligned_cols=38  Identities=32%  Similarity=0.406  Sum_probs=36.3

Q ss_pred             cCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHH
Q 006995          330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI  367 (622)
Q Consensus       330 ~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~  367 (622)
                      .+||+||++|+|+|||++.|+|||++|||+++||++|+
T Consensus         2 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   39 (41)
T 2eq9_C            2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYA   39 (41)
T ss_dssp             CBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHH
T ss_pred             CCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHh
Confidence            47999999999999999999999999999999999886

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=3.1e-10  Score=98.56  Aligned_cols=62  Identities=19%  Similarity=0.369  Sum_probs=59.7

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      .|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|. +++++|+. |..|++|+.|..
T Consensus        25 ~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~-V~~G~~l~~i~~   86 (100)
T 2dn8_A           25 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV-LEAGCVVARLEL   86 (100)
T ss_dssp             CEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE-ECSSCEEEEECC
T ss_pred             CEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE-ECCCCEEEEEEc
Confidence            589999999999999999999999999999999999999999 99999999 999999999864

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A

Probab=99.04  E-value=6.9e-11  Score=91.72  Aligned_cols=42  Identities=29%  Similarity=0.455  Sum_probs=38.8

Q ss_pred             CccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhc
Q 006995          328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS  369 (622)
Q Consensus       328 ~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~  369 (622)
                      .+.+||+||+||+|+|||++.|+|||++|||+++||++|++.
T Consensus         7 ~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~   48 (58)
T 3rnm_E            7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   48 (58)
T ss_dssp             -CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred             CcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence            356899999999999999999999999999999999999864

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.04  E-value=2.5e-10  Score=94.81  Aligned_cols=59  Identities=29%  Similarity=0.438  Sum_probs=56.0

Q ss_pred             eeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          228 NIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       228 ~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .+.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+. |..|++|+.|
T Consensus        21 ~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~L~~i   79 (80)
T 1bdo_A           21 PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVI   79 (80)
T ss_dssp             TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEE
T ss_pred             cCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-ECCCCEEEEE
Confidence            4456899999999999999999999999999999999999999999999 9999999987

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}

Probab=99.04  E-value=9e-11  Score=84.49  Aligned_cols=37  Identities=32%  Similarity=0.456  Sum_probs=35.7

Q ss_pred             CChhHHhHHHHcCCCcccccccCCCCeeechhhHHHH
Q 006995          331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI  367 (622)
Q Consensus       331 asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~  367 (622)
                      +||+||++|+++|||++.|+|||++|||+++||++|+
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq8_C            2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA   38 (40)
T ss_dssp             CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred             CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence            6899999999999999999999999999999999885

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.03  E-value=8.2e-11  Score=101.06  Aligned_cols=73  Identities=19%  Similarity=0.302  Sum_probs=27.6

Q ss_pred             eeecCCCCCCc----ccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          214 VLEMPALSPTM----NQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       214 ~~~~P~l~~~~----~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .+.+|......    ..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++.+++|+. |..|++|+.|
T Consensus        17 ~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i   93 (94)
T 2jku_A           17 NLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT-VGEGDLLVEL   93 (94)
T ss_dssp             -------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred             EEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE-ECCCCEEEEE
Confidence            44555555443    3699999999999999999999999999999999999999999999999999 9999999876

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}

Probab=99.02  E-value=7.5e-11  Score=84.90  Aligned_cols=37  Identities=32%  Similarity=0.561  Sum_probs=34.8

Q ss_pred             CChhHHhHHHHcCCCcccccccCCCCeeechhhHHHH
Q 006995          331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI  367 (622)
Q Consensus       331 asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~  367 (622)
                      +||+||++|+++|||++.|.|||++|||+++||++|+
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq7_C            2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL   38 (40)
T ss_dssp             CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred             CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence            6899999999999999999999999999999999875

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.01  E-value=3.5e-10  Score=129.82  Aligned_cols=62  Identities=27%  Similarity=0.370  Sum_probs=60.2

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      -|+|++|+|++||+|++||+||+||+||+.++|+||.+|+|+++++++||. |.+|++|+.|+
T Consensus       620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i~  681 (681)
T 3n6r_A          620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LAVDDVIMEFE  681 (681)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred             cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eCCCCEEEEEC
Confidence            499999999999999999999999999999999999999999999999999 99999999883

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=98.98  E-value=1.2e-09  Score=88.88  Aligned_cols=61  Identities=28%  Similarity=0.447  Sum_probs=59.0

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .|+|.+|++++||.|++||+|++++++|...+|.||.+|+|.++.+++|+. |..|++|+.+
T Consensus        13 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-v~~g~~l~~i   73 (74)
T 2d5d_A           13 PGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA-VDTGQPLIEL   73 (74)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred             CEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEE
Confidence            589999999999999999999999999999999999999999999999999 9999999886

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=98.98  E-value=1.3e-09  Score=89.64  Aligned_cols=61  Identities=26%  Similarity=0.401  Sum_probs=59.0

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .|.|.+|++++||.|++||+|++++++|+..+|.||.+|+|.++++++|+. |..|++|+.|
T Consensus        16 ~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~-v~~G~~l~~i   76 (77)
T 1dcz_A           16 AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKI   76 (77)
T ss_dssp             SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEE
T ss_pred             CEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE-ECCCCEEEEE
Confidence            579999999999999999999999999999999999999999999999999 9999999987

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=98.96  E-value=6.8e-10  Score=134.31  Aligned_cols=61  Identities=30%  Similarity=0.350  Sum_probs=59.7

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      -|+|.+|+|++||+|++||+||+||+||++++|+||++|+|.++++++||. |.+|++|+.|
T Consensus      1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~-V~~G~~l~~i 1235 (1236)
T 3va7_A         1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGDLVAVI 1235 (1236)
T ss_dssp             CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred             cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCE-eCCCCEEEEe
Confidence            399999999999999999999999999999999999999999999999999 9999999987

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A

Probab=98.95  E-value=2e-10  Score=87.19  Aligned_cols=40  Identities=35%  Similarity=0.542  Sum_probs=37.1

Q ss_pred             CccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHH
Q 006995          328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI  367 (622)
Q Consensus       328 ~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~  367 (622)
                      ...+||++|+||+++|||++.|.|||++|||+++||++|+
T Consensus         9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~   48 (51)
T 1bal_A            9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL   48 (51)
T ss_dssp             SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTS
T ss_pred             CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHh
Confidence            3468999999999999999999999999999999999875

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=98.95  E-value=1.7e-09  Score=93.62  Aligned_cols=64  Identities=23%  Similarity=0.361  Sum_probs=61.3

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      .|+|.+|++++||.|++||+|++|+++|+..+|.||++|+|.++++++|+. |..|++|+.|...
T Consensus        22 ~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i~~~   85 (99)
T 2ejm_A           22 TGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVEFEEE   85 (99)
T ss_dssp             SEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEE-ECTTCBCEEECCC
T ss_pred             CEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCE-ECCCCEEEEEECC
Confidence            589999999999999999999999999999999999999999999999999 9999999999654

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*

Probab=98.95  E-value=2.9e-10  Score=85.52  Aligned_cols=40  Identities=30%  Similarity=0.413  Sum_probs=37.7

Q ss_pred             ccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHh
Q 006995          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK  368 (622)
Q Consensus       329 ~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~  368 (622)
                      ..+||++|+||+++|||++.|.|||++|||+++||++|+.
T Consensus         7 ~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~   46 (49)
T 1w85_I            7 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   46 (49)
T ss_dssp             CCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             ccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence            4579999999999999999999999999999999999874

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=98.92  E-value=1.1e-09  Score=132.17  Aligned_cols=63  Identities=14%  Similarity=0.282  Sum_probs=60.7

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      .|+|++|+|++||+|++||+||+||+||+.++|+||++|+|.++++++||. |.+|++|+.|+.
T Consensus      1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A         1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIEIEK 1147 (1150)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-ECTTBEEEEEC-
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEec
Confidence            599999999999999999999999999999999999999999999999999 999999999964

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=98.85  E-value=3e-09  Score=122.11  Aligned_cols=60  Identities=30%  Similarity=0.405  Sum_probs=59.0

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      |+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|++|+.|
T Consensus       621 G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i  680 (681)
T 3n6r_A          621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LAVDDVIMEF  680 (681)
T ss_dssp             EEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred             EEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eCCCCEEEEE
Confidence            79999999999999999999999999999999999999999999999999 9999999987

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A

Probab=98.83  E-value=1.4e-09  Score=85.83  Aligned_cols=41  Identities=29%  Similarity=0.423  Sum_probs=38.2

Q ss_pred             ccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhc
Q 006995          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS  369 (622)
Q Consensus       329 ~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~  369 (622)
                      ..+||++|+||+++||||+.|.|||++|||+++||++|+..
T Consensus         5 ~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~   45 (62)
T 1w4i_A            5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEE   45 (62)
T ss_dssp             SEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence            35799999999999999999999999999999999999863

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K

Probab=98.82  E-value=1.5e-09  Score=86.13  Aligned_cols=40  Identities=38%  Similarity=0.610  Sum_probs=37.8

Q ss_pred             cCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhc
Q 006995          330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS  369 (622)
Q Consensus       330 ~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~  369 (622)
                      .+||+||++|+++|||++.|.|||++|||+++||++|+..
T Consensus        11 ~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   50 (64)
T 2f60_K           11 RLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL   50 (64)
T ss_dssp             HBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence            4799999999999999999999999999999999999763

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}

Probab=98.81  E-value=2.7e-09  Score=86.09  Aligned_cols=41  Identities=29%  Similarity=0.499  Sum_probs=38.4

Q ss_pred             ccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhc
Q 006995          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS  369 (622)
Q Consensus       329 ~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~  369 (622)
                      ..++|+||+||+++||||+.|.|||++|||+++||++|+..
T Consensus        16 ~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   56 (70)
T 2coo_A           16 TLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   56 (70)
T ss_dssp             CCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred             cccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence            45899999999999999999999999999999999999764

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=98.75  E-value=8.3e-09  Score=124.41  Aligned_cols=63  Identities=13%  Similarity=0.266  Sum_probs=60.3

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      .|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|++|+.|..
T Consensus      1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A         1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIEIEK 1147 (1150)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-ECTTBEEEEEC-
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEec
Confidence            379999999999999999999999999999999999999999999999999 999999999954

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.70  E-value=1.3e-08  Score=90.33  Aligned_cols=67  Identities=27%  Similarity=0.313  Sum_probs=61.1

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecceee-----------------------------EEecCCcEEEEEEEecCCC
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATV-----------------------------EFESLEEGFLAKILVPEGS  149 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~-----------------------------~i~s~~~G~i~~~~~~~g~  149 (622)
                      ..|+|.+|+|++||.|++||+|++|++.++..                             .|.||++|+|.++.+++|+
T Consensus         8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~   87 (116)
T 2k32_A            8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD   87 (116)
T ss_dssp             SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred             CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence            46999999999999999999999999986653                             8999999999999999999


Q ss_pred             ccccCC-CeEEEEEcCCc
Q 006995          150 KDVPVG-QPIAITVEDAD  166 (622)
Q Consensus       150 ~~v~~G-~~l~~i~~~~~  166 (622)
                      . |..| ++|+.|.+.+.
T Consensus        88 ~-v~~g~~~l~~i~~~~~  104 (116)
T 2k32_A           88 Y-VSASTTELVRVTNLNP  104 (116)
T ss_dssp             E-ECTTTSCCEEEECSCT
T ss_pred             E-EcCCCcEEEEEECCCe
Confidence            9 9999 99999976554

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.65  E-value=3.8e-08  Score=89.84  Aligned_cols=70  Identities=16%  Similarity=0.190  Sum_probs=58.7

Q ss_pred             EecCCCCCCCceEEEEEEE-ecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEE---EecCCCcccc---CCC-eEEE
Q 006995           89 VGMPALSPTMSQGNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI---LVPEGSKDVP---VGQ-PIAI  160 (622)
Q Consensus        89 ~~~p~~g~~~~eg~i~~w~-v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~---~~~~g~~~v~---~G~-~l~~  160 (622)
                      +..|.+|+      |.... +++||+|++||+||.||+||+..+|.||++|+|.++   +++.|+. |.   .|+ .|+.
T Consensus        39 ~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~-Vn~dp~g~GwL~~  111 (136)
T 1zko_A           39 HAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPEL-INKDPEGEGWLFK  111 (136)
T ss_dssp             HHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTH-HHHCTTTTTCCEE
T ss_pred             hhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccC-cccCCCCCeEEEE
Confidence            34555655      33333 499999999999999999999999999999999999   8889999 98   888 9999


Q ss_pred             EEcCC
Q 006995          161 TVEDA  165 (622)
Q Consensus       161 i~~~~  165 (622)
                      |....
T Consensus       112 i~~~~  116 (136)
T 1zko_A          112 MEISD  116 (136)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            97443

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.62  E-value=6.7e-09  Score=118.89  Aligned_cols=61  Identities=21%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      .|+|++|+|++||.|++||+||+||+||+..+|+||++|+|.++++++|+. |..|++|+.|
T Consensus       657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i  717 (718)
T 3bg3_A          657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILEI  717 (718)
T ss_dssp             CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-ECSSCEEECB
T ss_pred             CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence            699999999999999999999999999999999999999999999999999 9999999876

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.57  E-value=2.3e-08  Score=120.81  Aligned_cols=62  Identities=24%  Similarity=0.417  Sum_probs=53.8

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      .|+|.+|+|++||.|++||+||+||+||+..+|+||.+|+|.++++++|+. |..|++|+.|+
T Consensus      1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAVYG 1164 (1165)
T ss_dssp             CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-ECTTBEEEEC-
T ss_pred             CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEec
Confidence            599999999999999999999999999999999999999999999999999 99999999874

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.45  E-value=1.7e-07  Score=83.08  Aligned_cols=65  Identities=23%  Similarity=0.298  Sum_probs=59.5

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEeccccee-----------------------------eEecCCCeeEEEEeccCCCe
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATL-----------------------------EFECLEEGYLAKILAPEGSK  276 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-----------------------------~i~s~~~G~v~~i~~~~g~~  276 (622)
                      .|.|.+|++++||.|++||+|+++++.++..                             .|.||++|+|.++.+.+|+.
T Consensus         9 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~   88 (116)
T 2k32_A            9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGDY   88 (116)
T ss_dssp             CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTCE
T ss_pred             CEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCCE
Confidence            5899999999999999999999999986653                             89999999999999999999


Q ss_pred             ecccC-CeEEEEecCC
Q 006995          277 DVAVG-QPIAITVEDP  291 (622)
Q Consensus       277 ~v~vG-~~l~~i~~~~  291 (622)
                       |..| ++|+.|.+..
T Consensus        89 -v~~g~~~l~~i~~~~  103 (116)
T 2k32_A           89 -VSASTTELVRVTNLN  103 (116)
T ss_dssp             -ECTTTSCCEEEECSC
T ss_pred             -EcCCCcEEEEEECCC
Confidence             9999 9999997643

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.45  E-value=2.7e-07  Score=84.17  Aligned_cols=61  Identities=18%  Similarity=0.241  Sum_probs=53.8

Q ss_pred             eeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEE---eccCCCeecc---cCC-eEEEEec
Q 006995          228 NIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKI---LAPEGSKDVA---VGQ-PIAITVE  289 (622)
Q Consensus       228 ~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i---~~~~g~~~v~---vG~-~l~~i~~  289 (622)
                      .|+.+.+ ++||.|++||+||.||+||+.++|.||.+|+|.++   ++++|+. |.   .|+ .|+.|..
T Consensus        46 ~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~-Vn~dp~g~GwL~~i~~  114 (136)
T 1zko_A           46 DVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPEL-INKDPEGEGWLFKMEI  114 (136)
T ss_dssp             SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTH-HHHCTTTTTCCEEEEE
T ss_pred             CcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccC-cccCCCCCeEEEEEEE
Confidence            3544444 99999999999999999999999999999999999   8889998 98   887 8888863

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.44  E-value=5.8e-08  Score=111.16  Aligned_cols=61  Identities=16%  Similarity=0.234  Sum_probs=59.0

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus       657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i  717 (718)
T 3bg3_A          657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILEI  717 (718)
T ss_dssp             CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-ECSSCEEECB
T ss_pred             CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence            589999999999999999999999999999999999999999999999999 9999999875

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.38  E-value=1.7e-07  Score=113.22  Aligned_cols=62  Identities=23%  Similarity=0.397  Sum_probs=53.3

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      .|+|.+|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus      1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAVYG 1164 (1165)
T ss_dssp             CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-ECTTBEEEEC-
T ss_pred             CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEec
Confidence            489999999999999999999999999999999999999999999999999 99999998873

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.20  E-value=7.2e-07  Score=80.93  Aligned_cols=70  Identities=13%  Similarity=0.045  Sum_probs=53.7

Q ss_pred             EecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC---cccc---CCC-eEEE
Q 006995           89 VGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS---KDVP---VGQ-PIAI  160 (622)
Q Consensus        89 ~~~p~~g~~~~eg~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~---~~v~---~G~-~l~~  160 (622)
                      +.+|.+|+      |+...+ ++||+|++||+||+||+||+..+|.||.+|+|.+++.+.++   . |.   -|+ -|+.
T Consensus        30 ~a~~~lG~------i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~  102 (131)
T 1hpc_A           30 HAQDHLGE------VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGL-INSSPYEDGWMIK  102 (131)
T ss_dssp             HHHHHHCS------EEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTH-HHHCTTTTTCCEE
T ss_pred             hhcccCCC------ceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhh-hccCCCCCceEEE
Confidence            34455554      444444 99999999999999999999999999999999999865544   4 43   455 7888


Q ss_pred             EEcCC
Q 006995          161 TVEDA  165 (622)
Q Consensus       161 i~~~~  165 (622)
                      |....
T Consensus       103 i~~~~  107 (131)
T 1hpc_A          103 IKPTS  107 (131)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            86433

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.20  E-value=2.1e-06  Score=77.56  Aligned_cols=71  Identities=17%  Similarity=0.191  Sum_probs=54.6

Q ss_pred             EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEec---CCCccc---cCCC-eEEEE
Q 006995           89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP---EGSKDV---PVGQ-PIAIT  161 (622)
Q Consensus        89 ~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~---~g~~~v---~~G~-~l~~i  161 (622)
                      +..|.+|+ |...++    .++||+|++||+||+||++|+..+|.||.+|+|.+++..   ..+. |   +-|+ -|+.|
T Consensus        30 ~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~i  103 (128)
T 1onl_A           30 YAQDALGD-VVYVEL----PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPEL-VNQDPYGEGWIFRL  103 (128)
T ss_dssp             HHHHHHCS-EEEEEC----BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTH-HHHCTTTTTCCEEE
T ss_pred             HHhhcCCC-ceEEEe----cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhh-hccCCCCCccEEEE
Confidence            34455655 343333    499999999999999999999999999999999999754   4444 5   5566 78888


Q ss_pred             EcCC
Q 006995          162 VEDA  165 (622)
Q Consensus       162 ~~~~  165 (622)
                      ....
T Consensus       104 ~~~~  107 (128)
T 1onl_A          104 KPRD  107 (128)
T ss_dssp             EESC
T ss_pred             EECC
Confidence            6443

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.18  E-value=1.6e-06  Score=78.33  Aligned_cols=70  Identities=16%  Similarity=0.045  Sum_probs=53.2

Q ss_pred             EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecC---CCcccc---CCC-eEEEE
Q 006995           89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPE---GSKDVP---VGQ-PIAIT  161 (622)
Q Consensus        89 ~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~---g~~~v~---~G~-~l~~i  161 (622)
                      +.+|.+|+ |...++    +++||+|++||+||+||++|+..+|.||.+|+|.+++...   .+. |.   -|+ -|+.|
T Consensus        31 ~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~l-vn~dpy~~gWl~~i  104 (128)
T 3a7l_A           31 HAQELLGD-MVFVDL----PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPEL-VNSEPYAGGWIFKI  104 (128)
T ss_dssp             HHHHHHCS-EEEEEC----CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTH-HHHCTTTTTCCEEE
T ss_pred             HHhccCCc-eEEEEe----cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHH-hccCCCCCccEEEE
Confidence            44555655 343333    4999999999999999999999999999999999997644   444 44   455 77777


Q ss_pred             EcC
Q 006995          162 VED  164 (622)
Q Consensus       162 ~~~  164 (622)
                      ...
T Consensus       105 ~~~  107 (128)
T 3a7l_A          105 KAS  107 (128)
T ss_dssp             EES
T ss_pred             EEC
Confidence            643

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=97.99  E-value=4e-06  Score=76.03  Aligned_cols=49  Identities=16%  Similarity=0.161  Sum_probs=43.0

Q ss_pred             ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC
Q 006995          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS  275 (622)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~  275 (622)
                      |.|+.+.+ ++|+.|++||+||+||++|+..+|.||.+|+|.+++.+.++
T Consensus        36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~   85 (131)
T 1hpc_A           36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTG   85 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHH
T ss_pred             CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhc
Confidence            45666666 99999999999999999999999999999999999755444

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=97.95  E-value=9.1e-06  Score=73.38  Aligned_cols=49  Identities=16%  Similarity=0.175  Sum_probs=42.0

Q ss_pred             ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC
Q 006995          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS  275 (622)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~  275 (622)
                      |.|+.+.+ ++|+.|++||+||+||++|+..+|.||.+|+|.+++.+.++
T Consensus        37 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~   86 (128)
T 3a7l_A           37 GDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSD   86 (128)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred             CceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhcc
Confidence            44555544 89999999999999999999999999999999999764443

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=97.90  E-value=1.2e-05  Score=72.47  Aligned_cols=61  Identities=16%  Similarity=0.199  Sum_probs=48.1

Q ss_pred             ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEecc---CCCeec---ccCC-eEEEEe
Q 006995          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP---EGSKDV---AVGQ-PIAITV  288 (622)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~---~g~~~v---~vG~-~l~~i~  288 (622)
                      |.|+.+.+ ++|+.|++||+||+||++|+..+|.||.+|+|.+++.+   ..+. |   +-|+ -|+.|.
T Consensus        36 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~i~  104 (128)
T 1onl_A           36 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPEL-VNQDPYGEGWIFRLK  104 (128)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTH-HHHCTTTTTCCEEEE
T ss_pred             CCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhh-hccCCCCCccEEEEE
Confidence            34555544 99999999999999999999999999999999999754   3333 4   4454 666664

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=97.81  E-value=9.6e-05  Score=77.21  Aligned_cols=66  Identities=20%  Similarity=0.269  Sum_probs=57.4

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~--------------------------------------------------  128 (622)
                      ..|.|.+++|++||.|++||+|++|++...                                                  
T Consensus        38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~  117 (341)
T 3fpp_A           38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD  117 (341)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred             CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence            459999999999999999999999987421                                                  


Q ss_pred             -----------------------------------eeEEecCCcEEEEEEEecCCCccccCCCe---EEEEEcCC
Q 006995          129 -----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP---IAITVEDA  165 (622)
Q Consensus       129 -----------------------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~~---l~~i~~~~  165 (622)
                                                         ...|.||++|+|.++.+..|+. |..|++   |+.|.+..
T Consensus       118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~~  191 (341)
T 3fpp_A          118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMS  191 (341)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCE-ECCTTSCCCCEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCE-EecCCCCceEEEEecCC
Confidence                                               1459999999999999999999 999988   88886544

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=97.67  E-value=4.4e-05  Score=80.38  Aligned_cols=67  Identities=18%  Similarity=0.284  Sum_probs=59.3

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~--------------------------------------------------  128 (622)
                      ..|.|.+++|++||.|++||+|++|++...                                                  
T Consensus        64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a  143 (359)
T 3lnn_A           64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS  143 (359)
T ss_dssp             SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            459999999999999999999999997532                                                  


Q ss_pred             --------------------------eeEEecCCcEEEEEEEecCCCccccC-CCeEEEEEcCCc
Q 006995          129 --------------------------TVEFESLEEGFLAKILVPEGSKDVPV-GQPIAITVEDAD  166 (622)
Q Consensus       129 --------------------------~~~i~s~~~G~i~~~~~~~g~~~v~~-G~~l~~i~~~~~  166 (622)
                                                ...|.||++|+|.++.+..|+. |.. |++|+.|.+.+.
T Consensus       144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~~g~~l~~i~~~~~  207 (359)
T 3lnn_A          144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAY-WNDTTASLMTVADLSH  207 (359)
T ss_dssp             HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCE-ECCSSCCSEEEECCSE
T ss_pred             HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCce-eCCCCcceEEEecCCe
Confidence                                      2579999999999999999999 999 999999976543

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=97.67  E-value=5.8e-05  Score=81.50  Aligned_cols=67  Identities=16%  Similarity=0.236  Sum_probs=59.0

Q ss_pred             ceEEEEEEEe-cCCCeeecCCeEEEEEec------------------------------------------------cee
Q 006995           99 SQGNIAKWRK-KEGDKIEIGDILCEIETD------------------------------------------------KAT  129 (622)
Q Consensus        99 ~eg~i~~w~v-~~Gd~V~~g~~l~~vetd------------------------------------------------K~~  129 (622)
                      ..|.|.+++| ++||.|++||+|++|++.                                                ...
T Consensus       128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~  207 (413)
T 3ne5_B          128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR  207 (413)
T ss_dssp             SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred             cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence            4699999998 999999999999999952                                                124


Q ss_pred             eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (622)
Q Consensus       130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~  166 (622)
                      ..|.||++|+|.++.+++|+. |..|++|+.|.+.+.
T Consensus       208 ~~I~AP~~G~V~~~~v~~G~~-V~~G~~l~~I~~~~~  243 (413)
T 3ne5_B          208 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMDP  243 (413)
T ss_dssp             EEEECSSSEEEEECCCCTTCE-ECTTSCSEEEEEEEE
T ss_pred             EEEEcCCCeEEEEEEcCCCCE-ECCCCcEEEEeCCCe
Confidence            689999999999999999999 999999999975443

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=97.63  E-value=1.9e-05  Score=80.26  Aligned_cols=67  Identities=31%  Similarity=0.319  Sum_probs=58.2

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecc---------------------------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDK---------------------------------------------------  127 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK---------------------------------------------------  127 (622)
                      ..|.|.+|+|++||.|++||+|++|++..                                                   
T Consensus        29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~  108 (277)
T 2f1m_A           29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ  108 (277)
T ss_dssp             SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred             ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence            45999999999999999999999998742                                                   


Q ss_pred             --------------------eeeEEecCCcEEEEEEEecCCCccccCC--CeEEEEEcCCc
Q 006995          128 --------------------ATVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDAD  166 (622)
Q Consensus       128 --------------------~~~~i~s~~~G~i~~~~~~~g~~~v~~G--~~l~~i~~~~~  166 (622)
                                          ....|.||++|+|.++.+..|+. |..|  ++|+.|.+.+.
T Consensus       109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~-v~~g~~~~l~~i~~~~~  168 (277)
T 2f1m_A          109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLDP  168 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCE-ECTTCSSCSEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCE-EcCCCCceeEEEecCCc
Confidence                                12479999999999999999999 9999  58999976443

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=97.58  E-value=8.4e-05  Score=66.56  Aligned_cols=50  Identities=20%  Similarity=0.211  Sum_probs=43.1

Q ss_pred             EEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995          101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (622)
Q Consensus       101 g~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~  150 (622)
                      |.|+.... ++|++|++||++|.||++|+..+|.||.+|+|.++.....+.
T Consensus        32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~   82 (125)
T 3klr_A           32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAEN   82 (125)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTC
T ss_pred             CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhC
Confidence            56766655 789999999999999999999999999999999997665443

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.43  E-value=0.00016  Score=65.93  Aligned_cols=50  Identities=20%  Similarity=0.266  Sum_probs=42.1

Q ss_pred             EEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995          101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (622)
Q Consensus       101 g~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~  150 (622)
                      |.|+-... ++|++|++||++|.||++|+..+|.||.+|+|.++.-...+.
T Consensus        54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~  104 (143)
T 3mxu_A           54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAES  104 (143)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTC
T ss_pred             CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhC
Confidence            55655444 789999999999999999999999999999999887655443

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.39  E-value=0.00018  Score=65.41  Aligned_cols=46  Identities=15%  Similarity=0.324  Sum_probs=39.7

Q ss_pred             EEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEec
Q 006995          101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP  146 (622)
Q Consensus       101 g~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~  146 (622)
                      |.|+.... ++|++|++||++|.||++|+..+|.||.+|+|.++.-.
T Consensus        49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~   95 (137)
T 3tzu_A           49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTA   95 (137)
T ss_dssp             CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHH
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhh
Confidence            55655444 78999999999999999999999999999999888543

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.32  E-value=8.1e-05  Score=78.99  Aligned_cols=66  Identities=26%  Similarity=0.293  Sum_probs=57.7

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~--------------------------------------------------  128 (622)
                      ..|.|.+++|++||.|++||+|++|++...                                                  
T Consensus        50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~  129 (369)
T 1vf7_A           50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE  129 (369)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            459999999999999999999999986421                                                  


Q ss_pred             -------eeEEecCCcEEEEEEEecCCCccccCC--CeEEEEEcCC
Q 006995          129 -------TVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDA  165 (622)
Q Consensus       129 -------~~~i~s~~~G~i~~~~~~~g~~~v~~G--~~l~~i~~~~  165 (622)
                             ...|.||++|+|.++.++.|+. |..|  ++|+.|.+.+
T Consensus       130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~-V~~g~g~~l~~i~~~~  174 (369)
T 1vf7_A          130 QARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMATVQQLD  174 (369)
T ss_dssp             HHHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSEEEECCS
T ss_pred             HHHHhhcCCEEECCCCeEEEEEEcCCCCe-EcCCCCceeEEEecCC
Confidence                   2579999999999999999999 9995  8999997544

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=97.26  E-value=0.00038  Score=62.32  Aligned_cols=47  Identities=19%  Similarity=0.208  Sum_probs=41.1

Q ss_pred             ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccC
Q 006995          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPE  273 (622)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~  273 (622)
                      |.|+-+.. ++|+.|++||+++.||++|+..+|.||.+|+|.+++..-
T Consensus        32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l   79 (125)
T 3klr_A           32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKAL   79 (125)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG
T ss_pred             CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhh
Confidence            56766655 789999999999999999999999999999999996443

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=97.21  E-value=0.00038  Score=75.09  Aligned_cols=63  Identities=17%  Similarity=0.264  Sum_probs=56.3

Q ss_pred             cceeeEeee-CCCCeeecCCeeEEEecc------------------------------------------------ccee
Q 006995          226 QGNIAKWRK-NEGDKIEVGDVICEIETD------------------------------------------------KATL  256 (622)
Q Consensus       226 eg~i~~w~v-~~Gd~V~~gd~l~~vetd------------------------------------------------K~~~  256 (622)
                      .|.|.+++| ++||.|++||+|++|++.                                                ....
T Consensus       129 ~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~  208 (413)
T 3ne5_B          129 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRF  208 (413)
T ss_dssp             CEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCEE
T ss_pred             CEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccE
Confidence            589999998 999999999999999952                                                1235


Q ss_pred             eEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       257 ~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      .|.||++|+|.++.+.+|+. |..|++|+.|.+
T Consensus       209 ~I~AP~~G~V~~~~v~~G~~-V~~G~~l~~I~~  240 (413)
T 3ne5_B          209 TLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQG  240 (413)
T ss_dssp             EEECSSSEEEEECCCCTTCE-ECTTSCSEEEEE
T ss_pred             EEEcCCCeEEEEEEcCCCCE-ECCCCcEEEEeC
Confidence            79999999999999999999 999999999974

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=97.21  E-value=0.00015  Score=73.57  Aligned_cols=64  Identities=27%  Similarity=0.307  Sum_probs=56.2

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEeccc----------------------------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDK----------------------------------------------------  253 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK----------------------------------------------------  253 (622)
                      .|.|.+++|++||.|++||+|+++++..                                                    
T Consensus        30 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~  109 (277)
T 2f1m_A           30 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ  109 (277)
T ss_dssp             CEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHH
T ss_pred             cEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence            4899999999999999999999998742                                                    


Q ss_pred             -------------------ceeeEecCCCeeEEEEeccCCCeecccC--CeEEEEecC
Q 006995          254 -------------------ATLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVED  290 (622)
Q Consensus       254 -------------------~~~~i~s~~~G~v~~i~~~~g~~~v~vG--~~l~~i~~~  290 (622)
                                         ....|.||++|+|..+.+..|+. |..|  ++|+.|.+.
T Consensus       110 a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~-v~~g~~~~l~~i~~~  166 (277)
T 2f1m_A          110 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQL  166 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCE-ECTTCSSCSEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCE-EcCCCCceeEEEecC
Confidence                               02379999999999999999999 9999  589988754

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=97.20  E-value=0.00037  Score=73.24  Aligned_cols=64  Identities=20%  Similarity=0.319  Sum_probs=57.1

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (622)
                      .|.|.++++++||.|++||+|++++....                                                   
T Consensus        65 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~  144 (359)
T 3lnn_A           65 AGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASE  144 (359)
T ss_dssp             CEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999997532                                                   


Q ss_pred             -------------------------eeeEecCCCeeEEEEeccCCCeeccc-CCeEEEEecC
Q 006995          255 -------------------------TLEFECLEEGYLAKILAPEGSKDVAV-GQPIAITVED  290 (622)
Q Consensus       255 -------------------------~~~i~s~~~G~v~~i~~~~g~~~v~v-G~~l~~i~~~  290 (622)
                                               ...|.||++|+|..+.+..|+. |.. |++|+.|.+.
T Consensus       145 l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~~g~~l~~i~~~  205 (359)
T 3lnn_A          145 SQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAY-WNDTTASLMTVADL  205 (359)
T ss_dssp             HHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCE-ECCSSCCSEEEECC
T ss_pred             HHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCce-eCCCCcceEEEecC
Confidence                                     2469999999999999999999 999 9999998753

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=97.14  E-value=0.00043  Score=72.20  Aligned_cols=64  Identities=19%  Similarity=0.277  Sum_probs=55.7

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (622)
                      .|.|.+++|++||.|++||+|++++....                                                   
T Consensus        39 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~  118 (341)
T 3fpp_A           39 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDN  118 (341)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHH
T ss_pred             CcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence            48999999999999999999999987520                                                   


Q ss_pred             ----------------------------------eeeEecCCCeeEEEEeccCCCeecccCCe---EEEEecC
Q 006995          255 ----------------------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP---IAITVED  290 (622)
Q Consensus       255 ----------------------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~~---l~~i~~~  290 (622)
                                                        ...|.||++|+|..+.+..|+. |..|++   |+.|.+.
T Consensus       119 a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~  190 (341)
T 3fpp_A          119 AATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADM  190 (341)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCE-ECCTTSCCCCEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCE-EecCCCCceEEEEecC
Confidence                                              1359999999999999999999 999987   8888643

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.09  E-value=0.00063  Score=62.80  Aligned_cols=45  Identities=16%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             EEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEe
Q 006995          101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILV  145 (622)
Q Consensus       101 g~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~  145 (622)
                      |.|+-... ++|+.|++||+++.||+.|+..+|.||.+|+|.++.-
T Consensus        59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~  104 (155)
T 3hgb_A           59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS  104 (155)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence            45554433 7899999999999999999999999999999988754

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.07  E-value=0.00073  Score=61.67  Aligned_cols=46  Identities=24%  Similarity=0.323  Sum_probs=40.0

Q ss_pred             ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEecc
Q 006995          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP  272 (622)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~  272 (622)
                      |.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+++-.
T Consensus        54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~  100 (143)
T 3mxu_A           54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAA  100 (143)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred             CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence            55665544 78999999999999999999999999999999998643

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=96.99  E-value=0.00076  Score=61.24  Aligned_cols=44  Identities=16%  Similarity=0.344  Sum_probs=39.2

Q ss_pred             ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (622)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~  270 (622)
                      |.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+++
T Consensus        49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN   93 (137)
T 3tzu_A           49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN   93 (137)
T ss_dssp             CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence            56665544 789999999999999999999999999999999985

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=96.75  E-value=8.3e-05  Score=78.54  Aligned_cols=64  Identities=28%  Similarity=0.406  Sum_probs=54.8

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~--------------------------------------------------  128 (622)
                      ..|.|.+++|++||.|++||+|++|++...                                                  
T Consensus        39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~  118 (369)
T 4dk0_A           39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN  118 (369)
T ss_dssp             SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred             CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence            358999999999999999999999987521                                                  


Q ss_pred             -----------------------------------eeEEecCCcEEEEEEEecCCCccccCCCe---EEEEEc
Q 006995          129 -----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP---IAITVE  163 (622)
Q Consensus       129 -----------------------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~~---l~~i~~  163 (622)
                                                         ...|.||++|+|.++.++.|+. |..|++   |+.|.+
T Consensus       119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~  190 (369)
T 4dk0_A          119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQT-VNSNQTTPTIIKVAD  190 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCB-CCTTTSCCCCBBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCC-ccCCCCcceEEEEcC
Confidence                                               1349999999999999999999 999998   666643

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=96.74  E-value=0.00066  Score=71.91  Aligned_cols=64  Identities=20%  Similarity=0.272  Sum_probs=55.9

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (622)
                      .|.|.++++++||.|++||+|++|+....                                                   
T Consensus        51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~  130 (369)
T 1vf7_A           51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ  130 (369)
T ss_dssp             CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999986421                                                   


Q ss_pred             ------eeeEecCCCeeEEEEeccCCCeecccC--CeEEEEecC
Q 006995          255 ------TLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVED  290 (622)
Q Consensus       255 ------~~~i~s~~~G~v~~i~~~~g~~~v~vG--~~l~~i~~~  290 (622)
                            ...|.||++|+|..+.+..|+. |..|  ++|+.|...
T Consensus       131 a~~~l~~~~I~AP~~G~V~~~~v~~G~~-V~~g~g~~l~~i~~~  173 (369)
T 1vf7_A          131 ARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMATVQQL  173 (369)
T ss_dssp             HHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSEEEECC
T ss_pred             HHHhhcCCEEECCCCeEEEEEEcCCCCe-EcCCCCceeEEEecC
Confidence                  2479999999999999999999 9995  899988643

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=96.60  E-value=0.0028  Score=58.45  Aligned_cols=44  Identities=16%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (622)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~  270 (622)
                      |.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.+++
T Consensus        59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN  103 (155)
T 3hgb_A           59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN  103 (155)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence            55555433 789999999999999999999999999999999985

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=96.34  E-value=0.00068  Score=71.44  Aligned_cols=62  Identities=23%  Similarity=0.356  Sum_probs=53.4

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (622)
                      .|.|.+++|++||.|++||+|++++....                                                   
T Consensus        40 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~  119 (369)
T 4dk0_A           40 SGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNT  119 (369)
T ss_dssp             CSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHH
T ss_pred             CcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence            48999999999999999999999987521                                                   


Q ss_pred             ----------------------------------eeeEecCCCeeEEEEeccCCCeecccCCe---EEEEe
Q 006995          255 ----------------------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP---IAITV  288 (622)
Q Consensus       255 ----------------------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~~---l~~i~  288 (622)
                                                        ...|.||++|+|..+.+..|+. |..|++   |+.|.
T Consensus       120 a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~  189 (369)
T 4dk0_A          120 AKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQT-VNSNQTTPTIIKVA  189 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCB-CCTTTSCCCCBBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCC-ccCCCCcceEEEEc
Confidence                                              1249999999999999999999 999998   55554

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=95.75  E-value=0.016  Score=60.76  Aligned_cols=32  Identities=19%  Similarity=0.395  Sum_probs=27.3

Q ss_pred             EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEE
Q 006995          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK  142 (622)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~  142 (622)
                      ..+|++||.|++||.||+-.      .|-+.++|+|.+
T Consensus        62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~   93 (352)
T 2xhc_A           62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD   93 (352)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred             EEEecCCCEEcCCCEEEEec------cEEEecceEEEe
Confidence            67999999999999999974      788888888753

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=95.74  E-value=0.02  Score=59.74  Aligned_cols=60  Identities=18%  Similarity=0.292  Sum_probs=50.4

Q ss_pred             EEEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995          102 NIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus       102 ~i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      =+.+.+++.||.|++||+|++|..    .....+|.||++|+|......  -. |..|+.|+.|...
T Consensus       266 Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~~--~~-V~~G~~l~~Ia~~  329 (331)
T 3na6_A          266 GLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHFP--GM-IKSGDCAAVIGVV  329 (331)
T ss_dssp             EEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEECS--SE-ECTTCEEEEEECB
T ss_pred             eEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeCC--Cc-cCCCCEEEEEecc
Confidence            377889999999999999999986    356789999999999776553  45 8899999998643

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=95.61  E-value=0.057  Score=51.52  Aligned_cols=31  Identities=19%  Similarity=0.402  Sum_probs=27.9

Q ss_pred             EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEE
Q 006995          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLA  141 (622)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~  141 (622)
                      ..+|++|+.|++||.||+-.      .|-+.++|+|.
T Consensus        22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~   52 (193)
T 2xha_A           22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV   52 (193)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred             EEEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence            46899999999999999875      89999999993

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=95.52  E-value=0.032  Score=58.71  Aligned_cols=59  Identities=20%  Similarity=0.262  Sum_probs=51.6

Q ss_pred             EEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995          103 IAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus       103 i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      +++..++.||.|++||+|+.|+.    .+...+|.||.+|+|..+.  .... |..|+.|+.|...
T Consensus       277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~-V~~Gd~l~~ia~~  339 (354)
T 3cdx_A          277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGR-VTRGDAVAVVMED  339 (354)
T ss_dssp             EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSE-ECTTCEEEEEEEE
T ss_pred             EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCc-cCCCCEEEEEeee
Confidence            77888999999999999999997    4888999999999998664  5667 8999999999643

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=94.81  E-value=0.051  Score=56.64  Aligned_cols=60  Identities=15%  Similarity=0.237  Sum_probs=50.1

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEecc----cceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIETD----KATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetd----K~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      +-+...+++.||.|++||+|++|...    ....+|.||.+|+|.....  ... |..|+.|+.|..
T Consensus       265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~-V~~G~~l~~Ia~  328 (331)
T 3na6_A          265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGM-IKSGDCAAVIGV  328 (331)
T ss_dssp             CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSE-ECTTCEEEEEEC
T ss_pred             CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEec
Confidence            33777889999999999999999973    5578999999999987754  445 899999999864

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=94.74  E-value=0.054  Score=57.28  Aligned_cols=59  Identities=14%  Similarity=0.173  Sum_probs=50.0

Q ss_pred             EEEEEEecCCCeeecCCeEEEEEe------cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995          102 NIAKWRKKEGDKIEIGDILCEIET------DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus       102 ~i~~w~v~~Gd~V~~g~~l~~vet------dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      =|....++.||.|++||+|++|-.      .....+|.||.+|+|.-....  -. |..|+.|+.|..
T Consensus       299 Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~--p~-V~~G~~l~~i~~  363 (368)
T 3fmc_A          299 GMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFAS--AS-VHQGTELYKVMT  363 (368)
T ss_dssp             EEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSS--SE-ECTTCEEEEEEE
T ss_pred             EEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCC--Cc-cCCCCEEEEEee
Confidence            366899999999999999999987      457789999999999766555  45 899999999854

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=94.43  E-value=0.089  Score=55.26  Aligned_cols=60  Identities=22%  Similarity=0.286  Sum_probs=51.4

Q ss_pred             eeeEeeeCCCCeeecCCeeEEEec----ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          228 NIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       228 ~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      -+.+..++.||.|++||+|++|+.    .+...+|.||.+|+|..+.  .... |..|+.|+.|...
T Consensus       276 G~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~-V~~Gd~l~~ia~~  339 (354)
T 3cdx_A          276 GLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGR-VTRGDAVAVVMED  339 (354)
T ss_dssp             EEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSE-ECTTCEEEEEEEE
T ss_pred             EEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCc-cCCCCEEEEEeee
Confidence            377888899999999999999997    4778899999999998764  5666 8999999988643

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=94.11  E-value=0.093  Score=55.49  Aligned_cols=60  Identities=12%  Similarity=0.166  Sum_probs=50.8

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEec------ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIET------DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet------dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      +=+....++.||.|++||+|++|..      .....+|.||.+|+|.....  .-. |..|+.|+.|..
T Consensus       298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~--~p~-V~~G~~l~~i~~  363 (368)
T 3fmc_A          298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFA--SAS-VHQGTELYKVMT  363 (368)
T ss_dssp             CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECS--SSE-ECTTCEEEEEEE
T ss_pred             CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEee
Confidence            4477789999999999999999998      45678999999999977653  455 999999998864

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=93.12  E-value=0.077  Score=49.42  Aligned_cols=59  Identities=24%  Similarity=0.295  Sum_probs=50.6

Q ss_pred             ceEEEEEEEecCCCeeec----CCeEEEEEecceeeEEecCCcEEEEEE-------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAKI-------------------------------  143 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~----g~~l~~vetdK~~~~i~s~~~G~i~~~-------------------------------  143 (622)
                      -.|+|+... +..|.|-.    |+-++...++   ..+.||++|+|..+                               
T Consensus        19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~   94 (161)
T 1f3z_A           19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE   94 (161)
T ss_dssp             SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred             CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence            468898865 78888877    8888877775   57899999999988                               


Q ss_pred             ----EecCCCccccCCCeEEEEE
Q 006995          144 ----LVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       144 ----~~~~g~~~v~~G~~l~~i~  162 (622)
                          ++++||. |+.|++|+.++
T Consensus        95 gF~~~V~~Gd~-V~~G~~L~~~d  116 (161)
T 1f3z_A           95 GFKRIAEEGQR-VKVGDTVIEFD  116 (161)
T ss_dssp             TEEECSCTTCE-ECTTCEEEEEC
T ss_pred             ccEEEEeCcCE-ECCCCEEEEEC
Confidence                8999999 99999999985

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=91.87  E-value=0.12  Score=47.86  Aligned_cols=59  Identities=19%  Similarity=0.251  Sum_probs=49.8

Q ss_pred             ceEEEEEEEecCCCeeec----CCeEEEEEecceeeEEecCCcEEEEE--------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAK--------------------------------  142 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~----g~~l~~vetdK~~~~i~s~~~G~i~~--------------------------------  142 (622)
                      -.|+|+... ++.|.|-.    |+-++...++   ..+.||++|+|..                                
T Consensus        14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~   89 (154)
T 2gpr_A           14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN   89 (154)
T ss_dssp             SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred             CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence            458888864 88888877    8888877775   5899999999987                                


Q ss_pred             ---EEecCCCccccCCCeEEEEE
Q 006995          143 ---ILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       143 ---~~~~~g~~~v~~G~~l~~i~  162 (622)
                         +++++||. |+.|++|+.++
T Consensus        90 gF~~~V~~Gd~-V~~G~~L~~~d  111 (154)
T 2gpr_A           90 GFESFVTQDQE-VNAGDKLVTVD  111 (154)
T ss_dssp             SEEECCCTTCE-ECTTCEEEEEC
T ss_pred             ceEEEEcCCCE-EcCCCEEEEEC
Confidence               48999999 99999999985

>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*

Probab=91.77  E-value=0.28  Score=58.91  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=31.9

Q ss_pred             EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEE
Q 006995          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK  142 (622)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~  142 (622)
                      ..+|++||.|++||.||+.  |--+..|-+.++|+|.=
T Consensus      1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f 1037 (1407)
T 3lu0_D         1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRF 1037 (1407)
T ss_dssp             EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEE
T ss_pred             EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEE
Confidence            4689999999999999987  77889999999998854

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=91.30  E-value=0.46  Score=49.25  Aligned_cols=60  Identities=18%  Similarity=0.214  Sum_probs=48.4

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      +-+...+++.|+.|++||+|+++-.    .+...+|.||.+|+|.-..  ..-. |..|+.|+.|..
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~-V~~Gd~l~~ia~  328 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMY-VQGNEEVAILAR  328 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEE-ECTTCEEEEEEE
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCe-eCCCCEEEEEee
Confidence            3466788999999999999999954    4677899999999996664  4445 888998988853

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=91.02  E-value=0.11  Score=48.39  Aligned_cols=59  Identities=22%  Similarity=0.238  Sum_probs=50.0

Q ss_pred             ceEEEEEEEecCCCeeec----CCeEEEEEecceeeEEecCCcEEEEEE-------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAKI-------------------------------  143 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~----g~~l~~vetdK~~~~i~s~~~G~i~~~-------------------------------  143 (622)
                      -.|+|+.. .+..|.|-.    |+-++...+   ...+.||++|+|..+                               
T Consensus        19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~   94 (162)
T 1ax3_A           19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE   94 (162)
T ss_dssp             CSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred             CceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence            46999886 778888777    788887666   457899999999988                               


Q ss_pred             ----EecCCCccccCCCeEEEEE
Q 006995          144 ----LVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       144 ----~~~~g~~~v~~G~~l~~i~  162 (622)
                          ++++||. |+.|++|+.++
T Consensus        95 gF~~~V~~Gd~-V~~G~~L~~~d  116 (162)
T 1ax3_A           95 GFTSFVSEGDR-VEPGQKLLEVD  116 (162)
T ss_dssp             TEEESCCCCSE-ECSEEEEEEEC
T ss_pred             ccEEEEeCCCE-EcCCCEEEEEC
Confidence                8899999 99999999985

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=89.68  E-value=0.39  Score=44.65  Aligned_cols=58  Identities=28%  Similarity=0.349  Sum_probs=48.0

Q ss_pred             cceeeEeeeCCCCeeec----CCeeEEEecccceeeEecCCCeeEEEE--------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAKI--------------------------------  269 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~s~~~G~v~~i--------------------------------  269 (622)
                      .|+|+.+. +..|.+-.    |+-++...++   ..+.||.+|+|..+                                
T Consensus        20 ~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~g   95 (161)
T 1f3z_A           20 SGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEG   95 (161)
T ss_dssp             CEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTT
T ss_pred             CeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCc
Confidence            46777766 67777766    7888877776   47899999999988                                


Q ss_pred             ---eccCCCeecccCCeEEEEe
Q 006995          270 ---LAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       270 ---~~~~g~~~v~vG~~l~~i~  288 (622)
                         ++++|+. |+.|++|+.+.
T Consensus        96 F~~~V~~Gd~-V~~G~~L~~~d  116 (161)
T 1f3z_A           96 FKRIAEEGQR-VKVGDTVIEFD  116 (161)
T ss_dssp             EEECSCTTCE-ECTTCEEEEEC
T ss_pred             cEEEEeCcCE-ECCCCEEEEEC
Confidence               8999999 99999999883

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=88.64  E-value=0.4  Score=45.71  Aligned_cols=31  Identities=26%  Similarity=0.422  Sum_probs=25.5

Q ss_pred             EeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEE
Q 006995          231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLA  267 (622)
Q Consensus       231 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~  267 (622)
                      .++|++|+.|++||.||+-.      .|-+..+|+|.
T Consensus        22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~   52 (193)
T 2xha_A           22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV   52 (193)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred             EEEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence            56899999999999999865      66777777774

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=88.50  E-value=1  Score=46.58  Aligned_cols=60  Identities=20%  Similarity=0.226  Sum_probs=48.1

Q ss_pred             ceeeEeeeCCCCeeecCCeeEEEec----ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      +-+....++.|+.|++||+|+++..    .+...+|.||.+|+|.-..  .... |..|+.|+.|..
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~-V~~Gd~l~~ia~  328 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMY-VQGNEEVAILAR  328 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEE-ECTTCEEEEEEE
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCe-eCCCCEEEEEee
Confidence            3456677889999999999999955    4567889999999997764  4445 889999988753

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=87.96  E-value=0.53  Score=43.42  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=46.8

Q ss_pred             cceeeEeeeCCCCeeec----CCeeEEEecccceeeEecCCCeeEEE---------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAK---------------------------------  268 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~s~~~G~v~~---------------------------------  268 (622)
                      .|+|+.+. +..|.+-.    |+-++...++   ..+.||.+|+|..                                 
T Consensus        15 ~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~g   90 (154)
T 2gpr_A           15 DGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNG   90 (154)
T ss_dssp             SEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCS
T ss_pred             CeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCc
Confidence            46777764 67777766    7888877776   4789999999997                                 


Q ss_pred             --EeccCCCeecccCCeEEEEe
Q 006995          269 --ILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       269 --i~~~~g~~~v~vG~~l~~i~  288 (622)
                        +++++|+. |+.|++|+.+.
T Consensus        91 F~~~V~~Gd~-V~~G~~L~~~d  111 (154)
T 2gpr_A           91 FESFVTQDQE-VNAGDKLVTVD  111 (154)
T ss_dssp             EEECCCTTCE-ECTTCEEEEEC
T ss_pred             eEEEEcCCCE-EcCCCEEEEEC
Confidence              48999999 99999999883

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=87.21  E-value=0.7  Score=42.72  Aligned_cols=47  Identities=17%  Similarity=0.073  Sum_probs=39.8

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEecceeeE-EecCCcEEEEEEEec
Q 006995          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVE-FESLEEGFLAKILVP  146 (622)
Q Consensus       100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~-i~s~~~G~i~~~~~~  146 (622)
                      ||.-+--.+.+||.|.+||.|+-|.|.|-.+- +.||++|+|.-+.-.
T Consensus       108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~  155 (169)
T 3d4r_A          108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI  155 (169)
T ss_dssp             CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred             CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence            45556678999999999999999999999886 899999999766543

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=85.21  E-value=0.6  Score=43.41  Aligned_cols=58  Identities=19%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             cceeeEeeeCCCCeeec----CCeeEEEecccceeeEecCCCeeEEEE--------------------------------
Q 006995          226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAKI--------------------------------  269 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~s~~~G~v~~i--------------------------------  269 (622)
                      .|+|+.+ .+..|.+-.    |+-++...++   ..+.||.+|+|..+                                
T Consensus        20 ~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~g   95 (162)
T 1ax3_A           20 TGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEG   95 (162)
T ss_dssp             SEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTT
T ss_pred             ceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCc
Confidence            4677776 567777666    7778776663   47789999999988                                


Q ss_pred             ---eccCCCeecccCCeEEEEe
Q 006995          270 ---LAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       270 ---~~~~g~~~v~vG~~l~~i~  288 (622)
                         ++++|+. |+.|++|+.+.
T Consensus        96 F~~~V~~Gd~-V~~G~~L~~~d  116 (162)
T 1ax3_A           96 FTSFVSEGDR-VEPGQKLLEVD  116 (162)
T ss_dssp             EEESCCCCSE-ECSEEEEEEEC
T ss_pred             cEEEEeCCCE-EcCCCEEEEEC
Confidence               8899999 99999998883

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=84.91  E-value=1.3  Score=40.87  Aligned_cols=45  Identities=16%  Similarity=0.099  Sum_probs=39.5

Q ss_pred             cceeeEeeeCCCCeeecCCeeEEEeccccee-eEecCCCeeEEEEe
Q 006995          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATL-EFECLEEGYLAKIL  270 (622)
Q Consensus       226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-~i~s~~~G~v~~i~  270 (622)
                      +|.-+-..+.+|+.|.+||.|+-|.|-|-.+ -+.||.+|+|.-+.
T Consensus       108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~  153 (169)
T 3d4r_A          108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN  153 (169)
T ss_dssp             CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred             CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence            4666677889999999999999999999887 48999999998775

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=84.24  E-value=0.95  Score=43.16  Aligned_cols=44  Identities=18%  Similarity=0.290  Sum_probs=37.2

Q ss_pred             EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (622)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~  150 (622)
                      ..+|++||.|++||.||+.  |+.+..|-+.++|+|.=-...+|.+
T Consensus        63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t  106 (190)
T 2auk_A           63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT  106 (190)
T ss_dssp             EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred             EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence            5699999999999999976  8999999999999996655555543

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=81.72  E-value=1.3  Score=46.35  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=24.9

Q ss_pred             eEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEE
Q 006995          230 AKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLA  267 (622)
Q Consensus       230 ~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~  267 (622)
                      ..++|++|+.|++||.||+-.      .|-+..+|+|.
T Consensus        61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~   92 (352)
T 2xhc_A           61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV   92 (352)
T ss_dssp             CEESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred             CEEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence            457899999999999999855      55666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	622
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	6e-56
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	1e-42
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	1e-42
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	1e-41
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	2e-33
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	9e-28
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	1e-25
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	2e-20
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	6e-18
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	6e-20
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	3e-19
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-18
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-17
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	5e-18
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	6e-17
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-13
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-12
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-12
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	5e-11
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	4e-12
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-11
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	1e-10
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	2e-09
d2cyua1	39	a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa	3e-07
d1w85i_	42	a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl	5e-07
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	0.001
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	0.003

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  187 bits (476), Expect = 6e-56
 Identities = 75/216 (34%), Positives = 119/216 (55%), Gaps = 11/216 (5%)

Query: 410 EDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKEL----KEKHNTKVSVND 465
           +  P T++RK +A RLLE+K +T  L   ++V + P++  RK+     +++H  ++    
Sbjct: 5   KRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMS 64

Query: 466 IVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISA 525
             +KAV  ALK  PE NA  D    ++V  +  D+S+AV+T +GL+TP++R+ D   ++ 
Sbjct: 65  FYVKAVVEALKRYPEVNASID--GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMAD 122

Query: 526 ISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQV 585
           I  ++KELA K R GKL   +  GG F+I+N G+F       IINPPQ+ IL +      
Sbjct: 123 IEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDR 182

Query: 586 VEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621
              V     N    ++  M L LS DHR+ +G+   
Sbjct: 183 PMAV-----NGQVEILPMMYLALSYDHRLIDGRESV 213

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  150 bits (380), Expect = 1e-42
 Identities = 26/195 (13%), Positives = 47/195 (24%), Gaps = 19/195 (9%)

Query: 428 SKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
                     +  + +   L   K+       K       I  +A  +   PE       
Sbjct: 22  QSVAQCTYNQTVQLDITAFLKTVKK------NKHKFYPAFIHILARLMNAHPEFRMAMK- 74

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHE 546
             GE+V+ D++     V  E+      + +              +            P  
Sbjct: 75  -DGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKG 133

Query: 547 FQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL 606
           F    F +S         F   +         V    +         G++       M L
Sbjct: 134 FIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYT-----QGDK-----VLMPL 183

Query: 607 TLSADHRVFEGKVGG 621
            +   H V +G   G
Sbjct: 184 AIQVHHAVCDGFHVG 198

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  151 bits (382), Expect = 1e-42
 Identities = 72/212 (33%), Positives = 116/212 (54%), Gaps = 8/212 (3%)

Query: 413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE---LKEKHNTKVSVNDIVIK 469
             + IR+ IA+ ++ SK   PH+ L  +  +  L++ RK+   +  +   K++    V+K
Sbjct: 18  KMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVK 77

Query: 470 AVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISME 529
           A+  AL+  P  N   D E  EI+     +I IA  T++GL+ P++++AD+K I A++ E
Sbjct: 78  ALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQE 137

Query: 530 VKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPV 589
           + ELAEKAR GKL P E +G + +I+N+G      F  +IN P+  IL +GR   + E  
Sbjct: 138 INELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGR---IAEKP 194

Query: 590 IGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621
           I  DG         + L+LS DHR+ +G    
Sbjct: 195 IVRDGE--IVAAPMLALSLSFDHRMIDGATAQ 224

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  147 bits (373), Expect = 1e-41
 Identities = 21/194 (10%), Positives = 55/194 (28%), Gaps = 16/194 (8%)

Query: 428 SKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
             +      L+S + +  L     +      +      ++I  +A A+    E       
Sbjct: 21  RHRLPCGFSLTSKIDITTLKKSLDD------SAYKFYPVMIYLIAQAVNQFDELRMAIK- 73

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEF 547
              E+++ D++D    V  ++      +       I    +    + E+ ++      + 
Sbjct: 74  -DDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQG 132

Query: 548 QGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT 607
                 + N+   P   F +                 +       +G+        + L+
Sbjct: 133 VTPENHL-NISALPWVNFDSFNLNVANFTDYFAP--IITMAKYQQEGDR-----LLLPLS 184

Query: 608 LSADHRVFEGKVGG 621
           +   H V +G    
Sbjct: 185 VQVHHAVCDGFHVA 198

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score =  126 bits (316), Expect = 2e-33
 Identities = 68/217 (31%), Positives = 103/217 (47%), Gaps = 8/217 (3%)

Query: 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVN 464
             E+ P T++ ++ A  L  S  N PH+       +  L +FR   K   EK   K++V 
Sbjct: 14  EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVL 73

Query: 465 DIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSIS 524
            +++KA A  LK +P+ N+        ++    + I  AV T  GL+ P++RN DQKS+ 
Sbjct: 74  PLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLL 133

Query: 525 AISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQ 584
            ++ E  ELAEKAR+ KL     QG  F+IS+LG      F  I+N P+  IL V + + 
Sbjct: 134 QLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASM 193

Query: 585 VVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621
                      +       + L+LS D RV  G    
Sbjct: 194 QPVWD-----GKAFQPRLMLPLSLSYDCRVINGAAAA 225

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 9e-28
 Identities = 51/86 (59%), Positives = 64/86 (74%)

Query: 83  LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
            P H  V +PALSPTM+ G + +W KK G+K+  GD+L EIETDKAT+ FE  EEG+LAK
Sbjct: 2   YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAK 61

Query: 143 ILVPEGSKDVPVGQPIAITVEDADDI 168
           ILVPEG++DVP+G P+ I VE   DI
Sbjct: 62  ILVPEGTRDVPLGTPLCIIVEKEADI 87

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.2 bits (247), Expect = 1e-25
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAK 268
            PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  EEGYLAK
Sbjct: 2   YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAK 61

Query: 269 ILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSV-TSGAEVK 308
           IL PEG++DV +G P+ I VE   D+    +   T   ++K
Sbjct: 62  ILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLK 102

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (208), Expect = 2e-20
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +  +   + +  + +W  KEGD +   D +CE+++DKA+V   S  +G + K+       
Sbjct: 9   LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68

Query: 151 DVPVGQPIA-ITVEDADDIQ 169
              VG+P+  I  E   D++
Sbjct: 69  -AYVGKPLVDIETEALKDLE 87

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (189), Expect = 6e-18
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +  +   + +  + +W   EGD +   D ICE+++DKA++      +G + K+       
Sbjct: 9   LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68

Query: 277 DVAVGQPIA-ITVEDPGDV 294
              VG+P+  I  E   D+
Sbjct: 69  -AYVGKPLVDIETEALKDL 86

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 82.1 bits (203), Expect = 6e-20
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P L  +++   +A W KK GD +   ++L EIETDK  +E  +  +G L  +L  EG+ 
Sbjct: 7   VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT 66

Query: 151 DVPVGQPIAITVEDAD 166
            V   Q +   + + +
Sbjct: 67  -VTSRQILGR-LREGN 80

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 80.2 bits (198), Expect = 3e-19
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P L  ++    +A W K  GD +   +V+ EIETDK  LE     +G L  +L  EG+ 
Sbjct: 7   VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT 66

Query: 277 DVAVGQPIAITVE 289
            V   Q +    E
Sbjct: 67  -VTSRQILGRLRE 78

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           +  P    +++ G +A W KK G+ ++  +++ +IETDK  +E  +  +G +A+I+  EG
Sbjct: 4   IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63

Query: 149 SKDVPVGQPIAITVED 164
              V  G+ +    E 
Sbjct: 64  DT-VLSGELLGKLTEG 78

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 75.2 bits (185), Expect = 2e-17
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
            P    ++  G +A W K  G+ ++  ++I +IETDK  +E     +G +A+I+  EG  
Sbjct: 6   APTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT 65

Query: 277 DVAVGQPIAITVEDPG 292
            V  G+ +   + + G
Sbjct: 66  -VLSGELLGK-LTEGG 79

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 76.7 bits (189), Expect = 5e-18
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P +   + +G I KW  K GD++   D+LCE++ DKA VE  S  +G + +ILVPEG+ 
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65

Query: 151 DVPVGQPIAI 160
              VGQ +  
Sbjct: 66  -ATVGQTLIT 74

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 73.6 bits (181), Expect = 6e-17
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +   +++G I KW    GD++   DV+CE++ DKA +E     +G + +IL PEG+ 
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65

Query: 277 DVAVGQPIAITVEDPG 292
              VGQ +   ++ PG
Sbjct: 66  -ATVGQTLIT-LDAPG 79

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P +       +I       GD I + D L  +ETDKAT++  +   G + ++ V  G K
Sbjct: 7   VPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK 65

Query: 151 DVPVGQPIAITVEDAD 166
            +  G  I +   +  
Sbjct: 66  -ISEGGLIVVVEAEGT 80

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +       +I     N GD I V D +  +ETDKAT++      G + ++    G K
Sbjct: 7   VPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK 65

Query: 277 DVAVGQPIAITVEDPGD 293
            ++ G  I + VE  G 
Sbjct: 66  -ISEGGLIVV-VEAEGT 80

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P +     +  + +   K GDK+     L  +E DKA++E  +   G + ++ V  G K
Sbjct: 7   VPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK 64

Query: 151 DVPVGQPIAITVEDAD 166
            V  G  I I   +  
Sbjct: 65  -VKTGSLIMIFEVEGA 79

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 56.7 bits (137), Expect = 5e-11
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +    ++  + +     GDK+     +  +E DKA++E      G + ++    G K
Sbjct: 7   VPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK 64

Query: 277 DVAVGQPIAITVEDPGD 293
            V  G  I I  E  G 
Sbjct: 65  -VKTGSLIMI-FEVEGA 79

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 59.9 bits (145), Expect = 4e-12
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 88  VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPE 147
           ++ +P +      G + +   K GD IE+   L  +E+ KA++E  S + G +  + V  
Sbjct: 3   IIRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59

Query: 148 GSKDVPVGQPIAITVEDADDIQ 169
           G K +  G  I   +E A   +
Sbjct: 60  GDK-LKEGDAIIE-LEPAAGAR 79

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 58.3 bits (141), Expect = 1e-11
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPE 273
           ++ +P +      G + +     GD IEV   +  +E+ KA++E    + G +  +    
Sbjct: 3   IIRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59

Query: 274 GSKDVAVGQPIAI 286
           G K +  G  I  
Sbjct: 60  GDK-LKEGDAIIE 71

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIA 159
            G ++K   KEGD ++ G  +  +E  K   E  +  +G + K+LV E    V  GQ + 
Sbjct: 16  AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLI 74

Query: 160 I 160
            
Sbjct: 75  K 75

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA 285
            G ++K    EGD ++ G  +  +E  K   E     +G + K+L  E    V  GQ + 
Sbjct: 16  AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLI 74

Query: 286 I 286
            
Sbjct: 75  K 75

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 44.9 bits (107), Expect = 3e-07
 Identities = 14/38 (36%), Positives = 24/38 (63%)

Query: 331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK 368
           +SP+ + L+ EH LDAS+++ +G  G L + DV   + 
Sbjct: 1   LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 38

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.5 bits (106), Expect = 5e-07
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK 368
              PS +    E G+D   +Q +G  G +LK D+ A + 
Sbjct: 3   IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 41

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 82  ELPSHTV----VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEE 137
           E+  H V    VG    +P+      AK   + G K+ +GD LC +E  K   + E+ + 
Sbjct: 1   EISGHIVRSPMVGTFYRTPS----PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKS 56

Query: 138 GFLAKILVPEGSKDVPVGQPIAI 160
           G +  ILV  G   V   +P+ +
Sbjct: 57  GTVKAILVESGQP-VEFDEPLVV 78

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 230 AKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAI 286
           AK     G K+ VGD +C +E  K   + E  + G +  IL   G   V   +P+ +
Sbjct: 23  AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVV 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	622
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	100.0
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	100.0
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	100.0
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.88
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.85
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.85
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.83
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.83
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.8
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.8
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.79
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.79
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.77
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.77
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.76
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.76
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.69
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.68
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.66
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.56
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.48
d1w85i_	42	E3/E1 binding domain of dihydrolipoyl acetyltransf	99.4
d2cyua1	39	E3-binding domain of dihydrolipoamide succinyltran	99.38
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.37
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.26
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	96.86
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	96.73
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	96.33
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	96.23
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	95.92
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	92.49
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	81.88

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=100.00  E-value=9.8e-58  Score=458.20  Aligned_cols=211  Identities=32%  Similarity=0.430  Sum_probs=201.7

Q ss_pred             CCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHh---hhCCCCccHHHHHHHHHHHHHhhccccce
Q 006995          407 DSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANA  483 (622)
Q Consensus       407 ~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k---~~~g~k~t~~~~iikAva~Al~~~P~lN~  483 (622)
                      +..+++|++++||+||++|++||+++||||++.++|+|+|+++|++++   ++.|.|+|+++||+||++.||++||.+|+
T Consensus        13 G~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~~~~~~k~t~~~~iikA~a~Al~~~P~~Ns   92 (243)
T d1dpba_          13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNS   92 (243)
T ss_dssp             SCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGE
T ss_pred             CCcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHhhhhhh
Confidence            467889999999999999999999999999999999999999999876   45899999999999999999999999999


Q ss_pred             eecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCcc
Q 006995          484 YWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVD  563 (622)
Q Consensus       484 ~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~  563 (622)
                      +|+++...+++++++||||||++++||++|||++++++|+.+|++++++|++++|+|+|+++|++||||||||+||||++
T Consensus        93 ~~~~~~~~~~~~~~inigiAv~~~~GL~vPVI~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~d~~ggTfTiSNlG~~G~~  172 (243)
T d1dpba_          93 SLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGT  172 (243)
T ss_dssp             EECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCS
T ss_pred             ccccccccceeecccceeeeeccCcceeeeeecchhhhhHHHHHHHHHHHHHHhhhcccccccccCceeEEeccCCccce
Confidence            99877567999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          564 QFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       564 ~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      +|+|||||||+||||+|++.++|++++|     ++++|++|+|||||||||+||++||+
T Consensus       173 ~~tpiInppq~aIlgvG~i~~~pv~~~~-----~i~~r~~m~ltls~DHRvidGa~aa~  226 (243)
T d1dpba_         173 AFTPIVNAPEVAILGVSKASMQPVWDGK-----AFQPRLMLPLSLSYDCRVINGAAAAR  226 (243)
T ss_dssp             CCCCCCCTTSSEEEEECCCEEEEEECSS-----SEEEEEEEEEEEEEETTTSCHHHHHH
T ss_pred             eEEeeeccccceeeecccceeeEEEECC-----EEEEEEEEEEEEEeecccccHHHHHH
Confidence            9999999999999999999999988654     89999999999999999999999874

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-58  Score=456.95  Aligned_cols=207  Identities=36%  Similarity=0.561  Sum_probs=199.0

Q ss_pred             ceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHh----hhCCCCccHHHHHHHHHHHHHhhcccccee
Q 006995          409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAY  484 (622)
Q Consensus       409 ~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k----~~~g~k~t~~~~iikAva~Al~~~P~lN~~  484 (622)
                      .+++|+++|||+||++|++||+++||||++.+||+|+|+++|++++    ++.|.|+||++||+||+++||++||.+|++
T Consensus         4 ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na~   83 (233)
T d1scza_           4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             CcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhheE
Confidence            5678999999999999999999999999999999999999999876    346899999999999999999999999999


Q ss_pred             ecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccc
Q 006995          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (622)
Q Consensus       485 ~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~  564 (622)
                      |+++.  +++++++|||+||++++||++|||++++++|+.||++++++|++++|+|+|+++|++||||||||+|+||+++
T Consensus        84 ~~~~~--i~~~~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~~  161 (233)
T d1scza_          84 IDGDD--VVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM  161 (233)
T ss_dssp             EETTE--EECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred             EcCCe--EEEeccceEEEEEEcCCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCcccccee
Confidence            99865  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       565 ~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      |+|||||||+||||+|++.++|++++|     +++++++|+|||||||||+||++||+
T Consensus       162 ~tpii~ppq~aIl~vG~i~~~pv~~~g-----~i~~r~~~~lsls~DHRviDGa~aa~  214 (233)
T d1scza_         162 STPIINPPQSAILGMHAIKDRPMAVNG-----QVEILPMMYLALSYDHRLIDGRESVG  214 (233)
T ss_dssp             CCCCCCTTCSEEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHH
T ss_pred             eeeecCCCCceEEecccceeeccccCC-----eEEEEEEeEEEEEhhcchhccHHHHH
Confidence            999999999999999999999988765     89999999999999999999999874

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.4e-56  Score=448.64  Aligned_cols=209  Identities=33%  Similarity=0.512  Sum_probs=200.2

Q ss_pred             ceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHh---hhCCCCccHHHHHHHHHHHHHhhccccceee
Q 006995          409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANAYW  485 (622)
Q Consensus       409 ~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k---~~~g~k~t~~~~iikAva~Al~~~P~lN~~~  485 (622)
                      .+++|+++|||+||++|.+||+++||+|++.|+|+|+|+++|+++|   ++.|.|+||++|++||+++||++||.+|++|
T Consensus        14 ~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~~~~~g~klT~~~~likA~a~AL~~~P~~Na~~   93 (242)
T d1b5sa_          14 ETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSI   93 (242)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSCCB
T ss_pred             ceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhhhhhcccccchhhHHHHHHHHHHHHhhhhheEE
Confidence            4567999999999999999999999999999999999999999987   4679999999999999999999999999999


Q ss_pred             cCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccce
Q 006995          486 DVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF  565 (622)
Q Consensus       486 ~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~  565 (622)
                      +++.+.++++++|||||||++++||++|||++++++|+.+|+++++++++++|+|+|+++|++||||||||+|+||+++|
T Consensus        94 ~~~~~~i~~~~~v~igiAv~~~~gL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~gkl~~~dl~ggtftisnlG~~G~~~f  173 (242)
T d1b5sa_          94 DDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWF  173 (242)
T ss_dssp             CTTSSCBCCCSSCCEEECEECSSCEECCEETTGGGCCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSCEEEECTTTCCSCC
T ss_pred             cCCCCEEEEeeeeEEEEEecCCCceEeeeecccccccHHHHHHHHHHHHHHHHcCCCChhhccCcceEEeecCCCCccce
Confidence            88766799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          566 CAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       566 tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      +|||||||+||||+|++.++|++.+|     ++++|++|+||||||||++||++||+
T Consensus       174 tpii~~pq~ail~vG~i~~~pv~~dg-----~i~~r~~m~lslt~DHRviDGa~aa~  225 (242)
T d1b5sa_         174 TPVINHPEVAILGIGRIAEKPIVRDG-----EIVAAPMLALSLSFDHRMIDGATAQK  225 (242)
T ss_dssp             CCCCCTTCCEEEEECCCEEEEEECSS-----SEEEEEEEEEEEEECTTTSCSHHHHH
T ss_pred             ecccccccceEEeccceEEEEEEECC-----eEEEEEEEEEEEEEEcchhChHHHHH
Confidence            99999999999999999999988665     89999999999999999999999874

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.8e-36  Score=293.44  Aligned_cols=191  Identities=14%  Similarity=0.101  Sum_probs=167.8

Q ss_pred             ceeecCch-HhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecC
Q 006995          409 FEDFPNTQ-IRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV  487 (622)
Q Consensus       409 ~~~vp~s~-~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~  487 (622)
                      |+.+.++. -||.......  +...|||+++.+||+|+|++++|+.      ++||+++++||+++||++||+||++|++
T Consensus         4 ~k~ID~~~W~R~~~f~~f~--~~~~P~f~it~~vDvT~l~~~~K~~------~~sf~~~~~~av~~Al~~~P~~n~~~~~   75 (214)
T d1q23a_           4 YTTVDISQWHRKEHFEAFQ--SVAQCTYNQTVQLDITAFLKTVKKN------KHKFYPAFIHILARLMNAHPEFRMAMKD   75 (214)
T ss_dssp             EEECCGGGCTTHHHHHHHT--TTTCEEEEEEEEEECHHHHHHHHHT------TCCHHHHHHHHHHHHHTTCGGGSEEEET
T ss_pred             ceEeccccCcCHHHHHHHh--CCCCCeEEEEEEEcHHHHHHHHHHc------CCCcHHHHHHHHHHHHHhChHhheEEcC
Confidence            56667766 4666666543  3689999999999999999999876      7899999999999999999999999987


Q ss_pred             CCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCC-CCCCccCCCcEEEEeCCCCCcccee
Q 006995          488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHEFQGGTFSISNLGMFPVDQFC  566 (622)
Q Consensus       488 ~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~-l~~~d~~ggtftISNlG~~G~~~~t  566 (622)
                      ++  +++|+++|+|+||++++||++|+|++++.+++.+|++++.+++.++++++ |.++|++|+||||||+|++|.+.|+
T Consensus        76 ~~--i~~~~~i~i~iav~~~~gl~v~~i~~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~~~~~~tftiSnlg~~~ft~~~  153 (214)
T d1q23a_          76 GE--LVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFD  153 (214)
T ss_dssp             TE--EEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTCCCSEEE
T ss_pred             Cc--eeEcCccCeEEEEEcCCCeEEeEEecCchhhHHHHHHHHHHHHHHHHhCCCCCCccccCCEEEEEcCCCccccCcc
Confidence            54  99999999999999999999999999999999999999999999998875 8999999999999999999999988


Q ss_pred             eecCCCc---eEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          567 AIINPPQ---AGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       567 pii~~pq---~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      +.++.+.   +.++++|++.++       +|      |.+|||||+||||++||+++|+
T Consensus       154 ~~~~~~~~~~vpii~~Gk~~~~-------~~------r~~mplsls~dHrvvDG~~~a~  199 (214)
T d1q23a_         154 LNVANMDNFFAPVFTMGKYYTQ-------GD------KVLMPLAIQVHHAVCDGFHVGR  199 (214)
T ss_dssp             EEESCCTTCCSCEEEECCCEEE-------TT------EEEEEEEEEEETTTCCHHHHHH
T ss_pred             CCCCCCccceeeEEEecceEEE-------CC------EEEEEEEEEecccccchHHHHH
Confidence            7766554   458999987532       22      5689999999999999999874

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-34  Score=283.10  Aligned_cols=188  Identities=14%  Similarity=0.147  Sum_probs=154.4

Q ss_pred             eeecCch-HhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCC
Q 006995          410 EDFPNTQ-IRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVE  488 (622)
Q Consensus       410 ~~vp~s~-~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~  488 (622)
                      +.+.++. -||........  .+.|||+++.+||+|+|++++|+.      ++||+++++||+++||++||++|++|+++
T Consensus         4 ~~id~~~w~Rk~~f~~f~~--~~~P~~~~t~~vDvT~l~~~~K~~------~~sf~~~~~~a~~~Al~~~P~~n~~~~~~   75 (213)
T d3claa_           4 TKFDVKNWVRREHFEFYRH--RLPCGFSLTSKIDITTLKKSLDDS------AYKFYPVMIYLIAQAVNQFDELRMAIKDD   75 (213)
T ss_dssp             EECCCTTCTTHHHHHHHHH--TSCCEEEEEEEEECHHHHHHHHTS------SCCHHHHHHHHHHHHHTTCGGGSEEEETT
T ss_pred             eeeCcccCccHHHHHHHhC--CCCCEEEEEEEEeHHHHHHHHHHc------CCCeeHHHHHHHHHHHHhChHhhhEeccC
Confidence            3444444 46777766543  689999999999999999999765      78999999999999999999999999975


Q ss_pred             CCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCC-CCCCccCCCcEEEEeCCCCCccceee
Q 006995          489 KGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHEFQGGTFSISNLGMFPVDQFCA  567 (622)
Q Consensus       489 ~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~-l~~~d~~ggtftISNlG~~G~~~~tp  567 (622)
                        ++++|+++|+|+||++++||++|+|++++.+++.+|++++.++++++|+++ +.+++..| +.++ |+|++|+..||+
T Consensus        76 --~i~~~~~i~~~~aV~~~~gl~vp~i~~~~~~~l~~f~~~~~~~~~~ar~~~~~~~~~~~~-~~~~-~is~l~~~~Ft~  151 (213)
T d3claa_          76 --ELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTP-ENHL-NISALPWVNFDS  151 (213)
T ss_dssp             --EEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCC-SSEE-EEEEETTCCCSC
T ss_pred             --eEEEecccceEEEEEcCCCeEEeeEecCCCCCHHHHHHHHHHHHHHHHhCCCCCccccCC-CcEE-EeeccCceEeec
Confidence              499999999999999999999999999999999999999999999999986 55555444 3333 666666677899


Q ss_pred             ecCCCceE------EEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995          568 IINPPQAG------ILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT  622 (622)
Q Consensus       568 ii~~pq~a------il~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~  622 (622)
                      |+|+|+.+      |+..|++.++       +|      |.+|+|||+|||||+||+++|+
T Consensus       152 i~~~~~~~~~~~~Pii~~Gk~~~~-------~~------r~~m~lsls~dHrviDG~~aa~  199 (213)
T d3claa_         152 FNLNVANFTDYFAPIITMAKYQQE-------GD------RLLLPLSVQVHHAVCDGFHVAR  199 (213)
T ss_dssp             CCCCCSCCTTCCSCEEEEECCEEE-------TT------EEEEEEEEEEETTTCCHHHHHH
T ss_pred             ccCCcccCccccccEEecCccEEE-------CC------EEEEEEEEEecccccccHHHHH
Confidence            99988765      4444444321       11      6789999999999999999874

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.3e-23  Score=176.76  Aligned_cols=85  Identities=60%  Similarity=1.023  Sum_probs=79.6

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus        84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      ++|++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++||..|++|++||.|..
T Consensus         3 p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~   82 (102)
T d1y8ob1           3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE   82 (102)
T ss_dssp             CSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred             CCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEec
Confidence            78899999999999999999999999999999999999999999999999999999999999999733999999999976


Q ss_pred             CCccc
Q 006995          164 DADDI  168 (622)
Q Consensus       164 ~~~~~  168 (622)
                      .+++.
T Consensus        83 ~~~~~   87 (102)
T d1y8ob1          83 KEADI   87 (102)
T ss_dssp             SGGGG
T ss_pred             CCccc
Confidence            66543

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.85  E-value=3.9e-22  Score=164.02  Aligned_cols=77  Identities=27%  Similarity=0.553  Sum_probs=74.9

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      ++|+||+||++|+||+|++|+|++||+|++||+||+|||||++++|+||++|+|.++++++||. |.+|++|+.|++.
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~-v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCE-ECCCCEEEEEeCC
Confidence            6799999999999999999999999999999999999999999999999999999999999999 9999999999754

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.8e-22  Score=165.32  Aligned_cols=82  Identities=23%  Similarity=0.385  Sum_probs=77.7

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus        84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      ..+++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |++|++|+.|+.
T Consensus         2 ~~~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~-v~~G~~l~~i~~   80 (87)
T d1k8ma_           2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIET   80 (87)
T ss_dssp             CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEEC
T ss_pred             CccEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCE-ECCCCEEEEEEc
Confidence            4568899999999999999999999999999999999999999999999999999999999999999 999999999976


Q ss_pred             CCc
Q 006995          164 DAD  166 (622)
Q Consensus       164 ~~~  166 (622)
                      ++.
T Consensus        81 ~~~   83 (87)
T d1k8ma_          81 EAL   83 (87)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            543

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.83  E-value=3.6e-22  Score=164.49  Aligned_cols=77  Identities=36%  Similarity=0.624  Sum_probs=74.2

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      .+|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++||. |++|++|+.|+.+
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~-v~~G~~l~~ie~~   78 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAP   78 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSE-ECSSSCSBCBBCS
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            4689999999999999999999999999999999999999999999999999999999999999 9999999999654

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.8e-21  Score=163.94  Aligned_cols=87  Identities=53%  Similarity=0.968  Sum_probs=80.4

Q ss_pred             CCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995          209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (622)
Q Consensus       209 ~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~  288 (622)
                      .|.|.++.||+||++|++|+|++|+|++||.|++||+||+|||||++++|+|+.+|+|.++++++|+..|++|++|++|.
T Consensus         2 ~p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~   81 (102)
T d1y8ob1           2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV   81 (102)
T ss_dssp             CCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             CCCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEe
Confidence            46789999999999999999999999999999999999999999999999999999999999999973399999999997


Q ss_pred             cCCCCcC
Q 006995          289 EDPGDVG  295 (622)
Q Consensus       289 ~~~~~~~  295 (622)
                      +++++..
T Consensus        82 ~~~~~~~   88 (102)
T d1y8ob1          82 EKEADIS   88 (102)
T ss_dssp             SSGGGGG
T ss_pred             cCCcccc
Confidence            7655443

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=5.3e-22  Score=163.40  Aligned_cols=76  Identities=32%  Similarity=0.523  Sum_probs=74.1

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~  163 (622)
                      ++|+||+||++|+||+|++|+|++||+|++||+||+|||||++++|+||++|+|.++++++||. |.+|++|+.|++
T Consensus         3 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~-v~~G~~l~~i~e   78 (80)
T d1pmra_           3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCCC
T ss_pred             eEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCE-ECCCCEEEEEeC
Confidence            6799999999999999999999999999999999999999999999999999999999999999 999999999963

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.80  E-value=4.8e-20  Score=151.36  Aligned_cols=77  Identities=27%  Similarity=0.572  Sum_probs=74.4

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      .+++||++|++|++|+|.+|+|++||+|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|++|.++
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~-v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCE-ECCCCEEEEEeCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999 9999999999654

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=9.2e-20  Score=150.25  Aligned_cols=78  Identities=26%  Similarity=0.330  Sum_probs=73.9

Q ss_pred             cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995           85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus        85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      |.++|+||++|+  ++++|++|++++||.|++||+||+|||||++++|+|+.+|+|+++++++||. |.+|++|+.|+.+
T Consensus         1 M~~ei~~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~-V~~G~~l~~ie~e   77 (80)
T d1qjoa_           1 MVKEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE   77 (80)
T ss_dssp             CEEEECCCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred             CCeEEECCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            568999999997  5899999999999999999999999999999999999999999999999999 9999999999754


Q ss_pred             C
Q 006995          165 A  165 (622)
Q Consensus       165 ~  165 (622)
                      +
T Consensus        78 g   78 (80)
T d1qjoa_          78 G   78 (80)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.79  E-value=1.6e-20  Score=155.24  Aligned_cols=78  Identities=24%  Similarity=0.369  Sum_probs=74.1

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (622)
Q Consensus        86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~  165 (622)
                      +++|+||+||+ +++++|++|+|++||+|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|+.|+.++
T Consensus         2 iiei~~P~lg~-~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~-v~~G~~l~~ie~~g   79 (81)
T d1gjxa_           2 LVELKVPDIGG-HENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEAEG   79 (81)
T ss_dssp             CEECCCCCCSS-CSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECCSC
T ss_pred             cEEEECCCCCC-CcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCE-ECCCCEEEEEeccc
Confidence            57899999995 79999999999999999999999999999999999999999999999999999 99999999997544

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.6e-19  Score=147.97  Aligned_cols=78  Identities=22%  Similarity=0.430  Sum_probs=75.0

Q ss_pred             ceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       212 ~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      ..+++||+||+++++|+|++|++++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|+.|..+
T Consensus         4 ~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~-v~~G~~l~~i~~~   81 (87)
T d1k8ma_           4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIETE   81 (87)
T ss_dssp             CEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEECS
T ss_pred             cEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCE-ECCCCEEEEEEcC
Confidence            46799999999999999999999999999999999999999999999999999999999999999 9999999999654

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.77  E-value=7.2e-20  Score=150.57  Aligned_cols=77  Identities=31%  Similarity=0.625  Sum_probs=73.7

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      .+++||++|+++++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|+.|..+
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~-v~~G~~l~~ie~~   78 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAP   78 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSE-ECSSSCSBCBBCS
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            4689999999999999999999999999999999999999999999999999999999999999 9999999998543

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.76  E-value=7.1e-19  Score=144.50  Aligned_cols=76  Identities=26%  Similarity=0.395  Sum_probs=71.6

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (622)
Q Consensus        87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~  166 (622)
                      ..|+||++|+   +|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++||. |.+|++|+.|+..+.
T Consensus         2 ~~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~-V~~G~~l~~ie~~~~   77 (79)
T d1iyua_           2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPAAG   77 (79)
T ss_dssp             EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECCCS
T ss_pred             CEEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCE-ECCCCEEEEEecCcc
Confidence            4699999995   799999999999999999999999999999999999999999999999999 999999999975543

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=5.8e-20  Score=151.08  Aligned_cols=77  Identities=32%  Similarity=0.527  Sum_probs=74.0

Q ss_pred             ceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (622)
Q Consensus       212 ~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~  289 (622)
                      .++++||++|++|.+|+|++|+|++||+|++||+||+|||||++++|+||.+|+|.+|++++|+. |++|++|++|.+
T Consensus         2 ~iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~-v~~G~~l~~i~e   78 (80)
T d1pmra_           2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLRE   78 (80)
T ss_dssp             CCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCCC
T ss_pred             CeEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCE-ECCCCEEEEEeC
Confidence            35789999999999999999999999999999999999999999999999999999999999999 999999999853

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.69  E-value=6.1e-18  Score=139.54  Aligned_cols=77  Identities=27%  Similarity=0.408  Sum_probs=72.8

Q ss_pred             ceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       212 ~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      ..+++||++| ++.+++|++|++++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|+.+..+
T Consensus         2 iiei~~P~lg-~~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~-v~~G~~l~~ie~~   78 (81)
T d1gjxa_           2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEAE   78 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECCS
T ss_pred             cEEEECCCCC-CCcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCE-ECCCCEEEEEecc
Confidence            3579999999 588999999999999999999999999999999999999999999999999999 9999999999643

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=4.1e-17  Score=134.19  Aligned_cols=75  Identities=21%  Similarity=0.316  Sum_probs=71.0

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      .++++|++|.+  +++|++|++++||.|++||+||+||+||++++|+|+.+|+|.++++++|+. |++|++|+.|..+
T Consensus         3 ~ei~~P~lG~~--~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~-V~~G~~l~~ie~e   77 (80)
T d1qjoa_           3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE   77 (80)
T ss_dssp             EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred             eEEECCCCCCC--eEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            57899999864  799999999999999999999999999999999999999999999999999 9999999999654

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.66  E-value=1.5e-16  Score=130.41  Aligned_cols=73  Identities=22%  Similarity=0.372  Sum_probs=69.4

Q ss_pred             eeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995          214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (622)
Q Consensus       214 ~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~  290 (622)
                      .++||++|.   +|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+. |++|++|+.|...
T Consensus         3 ~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~-V~~G~~l~~ie~~   75 (79)
T d1iyua_           3 IIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPA   75 (79)
T ss_dssp             EEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECC
T ss_pred             EEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCE-ECCCCEEEEEecC
Confidence            578999984   899999999999999999999999999999999999999999999999999 9999999999643

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.56  E-value=3e-15  Score=121.98  Aligned_cols=60  Identities=30%  Similarity=0.428  Sum_probs=59.1

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       101 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                      |+|.+|+|++||+|++||+||.||+||+.++|+||++|+|+++++++|+. |..|++|+.|
T Consensus        17 G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~-V~~G~~L~~i   76 (77)
T d1dcza_          17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKI   76 (77)
T ss_dssp             CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEE
T ss_pred             cEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCE-ECCCCEEEEe
Confidence            89999999999999999999999999999999999999999999999999 9999999987

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.48  E-value=6.7e-14  Score=113.83  Aligned_cols=68  Identities=25%  Similarity=0.368  Sum_probs=62.8

Q ss_pred             eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      ..+..|..      |+|.+|+|++||+|++||+||.+|+||+.++|+||.+|+|.+|++++|+. |..|++|+.|
T Consensus         9 ~~v~ap~~------G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~-V~~G~~L~~i   76 (77)
T d1dcza_           9 GEIPAPLA------GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKI   76 (77)
T ss_dssp             SEEEBSSS------CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEE
T ss_pred             CEEECCCC------cEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCE-ECCCCEEEEe
Confidence            35555532      79999999999999999999999999999999999999999999999999 9999999987

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.40  E-value=4.1e-14  Score=100.14  Aligned_cols=40  Identities=30%  Similarity=0.413  Sum_probs=38.0

Q ss_pred             ccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHh
Q 006995          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK  368 (622)
Q Consensus       329 ~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~  368 (622)
                      +.+||+||+||+|+||||++|+|||++|||+++||++|++
T Consensus         2 v~asP~arkla~e~gidl~~i~GTG~~GRItk~DV~~~i~   41 (42)
T d1w85i_           2 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   41 (42)
T ss_dssp             CCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             cccCHHHHHHHHHcCCCHHHCccCCCCCcEeHHHHHHHhC
Confidence            4689999999999999999999999999999999999974

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=5.9e-14  Score=97.91  Aligned_cols=38  Identities=37%  Similarity=0.597  Sum_probs=36.3

Q ss_pred             CChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHh
Q 006995          331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK  368 (622)
Q Consensus       331 asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~  368 (622)
                      .||+||+||+|+|||+++|+|||++|||+|+||++|+.
T Consensus         1 iSP~arkla~e~gidl~~i~GtG~~GRI~k~Dv~~~i~   38 (39)
T d2cyua1           1 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA   38 (39)
T ss_dssp             CCCTHHHHHHHHTCCGGGSCCCSSSSCCCHHHHHHHSC
T ss_pred             CCHHHHHHHHHcCCCHHHCcCCCCCCcEeHHHHHHHHc
Confidence            48999999999999999999999999999999999974

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=3e-13  Score=110.45  Aligned_cols=57  Identities=30%  Similarity=0.482  Sum_probs=55.4

Q ss_pred             EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (622)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~  162 (622)
                      ++||++||+|++||+||.||+||+.++|+||.+|+|+++++++||. |..|++|+.|+
T Consensus        24 ~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~-V~~G~~L~~ie   80 (80)
T d1bdoa_          24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVIE   80 (80)
T ss_dssp             CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEEC
T ss_pred             CeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCE-ECCCCEEEEEC
Confidence            6899999999999999999999999999999999999999999999 99999999884

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=3.3e-12  Score=104.13  Aligned_cols=57  Identities=30%  Similarity=0.481  Sum_probs=55.2

Q ss_pred             eEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995          230 AKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (622)
Q Consensus       230 ~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i  287 (622)
                      .+++|++||.|++||+||.||+||+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus        23 ~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~-V~~G~~L~~i   79 (80)
T d1bdoa_          23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVI   79 (80)
T ss_dssp             SCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEE
T ss_pred             CCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCE-ECCCCEEEEE
Confidence            46899999999999999999999999999999999999999999999 9999999987

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00066  Score=58.93  Aligned_cols=46  Identities=15%  Similarity=0.292  Sum_probs=39.1

Q ss_pred             EEEEEEE-ecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEec
Q 006995          101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP  146 (622)
Q Consensus       101 g~i~~w~-v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~  146 (622)
                      |.|+... .++|++|++|+.++.||+.|+..+|.||++|+|.++...
T Consensus        35 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~~   81 (127)
T d1onla_          35 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLA   81 (127)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTH
T ss_pred             cccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhhh
Confidence            4454444 488999999999999999999999999999999888653

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=96.73  E-value=0.00093  Score=58.25  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=35.7

Q ss_pred             ecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEec
Q 006995          108 KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP  146 (622)
Q Consensus       108 v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~  146 (622)
                      .++|++|++||.++.||+.|+..+|.||++|+|.++.-.
T Consensus        44 p~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~~   82 (131)
T d1hpca_          44 PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTG   82 (131)
T ss_dssp             CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTH
T ss_pred             CCCCccccCCCceEEEEeecccccccCCcchhheeehhh
Confidence            379999999999999999999999999999999887544

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=96.33  E-value=0.0026  Score=55.03  Aligned_cols=45  Identities=16%  Similarity=0.288  Sum_probs=39.7

Q ss_pred             ceeeEee-eCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEec
Q 006995          227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA  271 (622)
Q Consensus       227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~  271 (622)
                      |.|+... .++|+.|++|+.++.||+.|+..+|.||.+|+|.++.-
T Consensus        35 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~   80 (127)
T d1onla_          35 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL   80 (127)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred             cccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhh
Confidence            5666654 38999999999999999999999999999999999853

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=96.23  E-value=0.0031  Score=54.82  Aligned_cols=44  Identities=18%  Similarity=0.225  Sum_probs=39.1

Q ss_pred             ceeeEee-eCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995          227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (622)
Q Consensus       227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~  270 (622)
                      |.|+... .++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus        36 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN   80 (131)
T d1hpca_          36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN   80 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred             hhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeeh
Confidence            5566554 4799999999999999999999999999999999885

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.92  E-value=0.00094  Score=63.06  Aligned_cols=62  Identities=29%  Similarity=0.336  Sum_probs=52.6

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (622)
Q Consensus        99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~--------------------------------------------------  128 (622)
                      ..|.|.+|+|++||.|++||+|++|++...                                                  
T Consensus        22 v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~a~~~l~  101 (237)
T d1vf7a_          22 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE  101 (237)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcchhHHHHH
Confidence            469999999999999999999999987411                                                  


Q ss_pred             -------eeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995          129 -------TVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (622)
Q Consensus       129 -------~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i  161 (622)
                             ...|.||++|+|.++.+.+|+. +..|.....+
T Consensus       102 ~a~~~l~~~~i~ap~~G~v~~~~~~~g~~-~~~~~~~~~~  140 (237)
T d1vf7a_         102 QARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMA  140 (237)
T ss_dssp             HHHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSE
T ss_pred             HHhhhhcccccccchhceeeeEEeccCcE-EcCCcceeeE
Confidence                   3348999999999999999999 9888765444

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.49  E-value=0.024  Score=52.86  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             EEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995          121 CEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (622)
Q Consensus       121 ~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~  164 (622)
                      ..|+..+ .++|.|+.+|+|.++++++|+. |+.|++|+.|+..
T Consensus         8 G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~-VkkGq~L~~ld~~   49 (237)
T d1vf7a_           8 GRTNAFR-IAEVRPQVNGIILKRLFKEGSD-VKAGQQLYQIDPA   49 (237)
T ss_dssp             EECEESC-EEEECCSSCEEEEECCSCSSEE-ECTTSEEEEECCH
T ss_pred             EEEEeeE-EEEEEeecCEEEEEEECCCcCE-ECCCCEEEEEehH
Confidence            3455533 4689999999999999999999 9999999999643

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.88  E-value=0.43  Score=38.86  Aligned_cols=24  Identities=29%  Similarity=0.577  Sum_probs=21.1

Q ss_pred             EEEEecCCCeeecCCeEEEEEecc
Q 006995          104 AKWRKKEGDKIEIGDILCEIETDK  127 (622)
Q Consensus       104 ~~w~v~~Gd~V~~g~~l~~vetdK  127 (622)
                      +.|+++.||.|++||+||+|=+++
T Consensus        48 i~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3          48 IVLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             EEESCCTTCEECTTCEEEEEEESS
T ss_pred             eEEeccCCCEEcCCCeEEEEEcCC
Confidence            489999999999999999987754