Citrus Sinensis ID: 007015

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-
MSSSPAAQLQSSGSDSEGSGQACEQSIVIPNRFITIADSFEKKEHSWFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTSRRTSFRRRPSLP
cccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccEEEEEccEEEEEcHHHHccccHHHHHHHcccccccccccEEEccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccHHHHHccccccccccccccccEEEEcccccccccHHcccccEEEEEccccccEEEEEccEEEEEccccccccHHHHHHHHEcccccccccEEEEccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccEccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccccHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccc
mssspaaqlqssgsdsegsgqaceqsivipnrFITIADSfekkehswfvtsqiptdlsiqvqDVTFTVhkyplmskcgyiarlelqpsisnlgydlklenfpggseTFEIILKFCyglpiafnpnniaplrcasefldmseeyedgnliskTEAFLTLVILSSWKETITVLKScknlspwaENLQIVRRCCDSIAWkasrensttedianrqgwwfddvatlGIDHFMRIITTIkvkgtkpeiIGKCIMHYAKKWlpgmdveleglrgygygkhELQFSILNAGKEEVSVGQKEQRTIIENLVNllphqdegvscKFFLQMLKMAMVYNASPALISELEKRVGMMLedanandllipnyknedhaklnspehntmhnIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAevardpnlsiTKFQVLAEslpenartcHDGLYRAIDTylkshpslsehDRRRLCKlmnceklslDACTHaaqndrlplRTVVQVLFSEQVKMRTAmqetepalqcdnseqgdtqpstSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKnsfhskadadetgnrrqtfnstsrrtsfrrrpslp
mssspaaqlqssgsdsegsgQACEQSIVIPNRFITIADSFEKKEHSWFVTsqiptdlsiqVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWkasrensttedianrqgwwFDDVATLGIDHFMRIITTikvkgtkpeiIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAklnspehntmHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTylkshpslsehdrRRLCKLMNCEKLSLDACTHaaqndrlplRTVVQVLFSEQVKMRTAMQetepalqcdnseqgdtqpstSIEIKNLREELENVKTRMAELQKDYSELQREYEKlsnkhkivsswslgwrkIKNSFhskadadetgnrrqtfnstsrrtsfrrrpslp
MSSSPAAQLQssgsdsegsgQACEQSIVIPNRFITIADSFEKKEHSWFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEqqqqqkqqNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGnrrqtfnstsrrtsfrrrPSLP
************************QSIVIPNRFITIADSFEKKEHSWFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY***************MHNIDVVQRIMDYFLM******************KILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSL**HDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQ******************************************************************HKIVSSWSLGWRKIK***********************************
**********************************************WFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLE***********LKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMD*****************************VGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY*************NTMHNIDVVQRIMDY********************SKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLS*HDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFS**********************************************************************************************************************
**********************CEQSIVIPNRFITIADSFEKKEHSWFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGK********EQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMH************KTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMR**********************STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSK*****************************
**********************CEQSIVIPNRFITIADSFEKKEHSWFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGM********************************QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNED*AKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQ*********************IEIKNLREELENVKTRMAELQKDYSELQREYEKLSN***************************************************
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSSPAAQLQSSGSDSEGSGQACEQSIVIPNRFITIADSFEKKEHSWFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTSRRTSFRRRPSLP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query621 2.2.26 [Sep-21-2011]
Q9LFU0607 Putative BTB/POZ domain-c yes no 0.958 0.980 0.601 0.0
Q9FMF5746 Root phototropism protein no no 0.851 0.709 0.407 1e-141
Q5KS50762 Coleoptile phototropism p yes no 0.869 0.708 0.379 1e-136
Q9S9Q9665 BTB/POZ domain-containing no no 0.842 0.786 0.357 1e-103
Q9FNB3591 Putative BTB/POZ domain-c no no 0.819 0.861 0.375 1e-100
Q66GP0604 BTB/POZ domain-containing no no 0.710 0.730 0.373 1e-93
Q9LYW0592 BTB/POZ domain-containing no no 0.838 0.880 0.337 5e-93
Q94A73668 BTB/POZ domain-containing no no 0.760 0.706 0.353 2e-92
Q9SA69634 BTB/POZ domain-containing no no 0.821 0.804 0.35 8e-90
Q9FYC8651 BTB/POZ domain-containing no no 0.824 0.786 0.315 1e-89
>sp|Q9LFU0|DOT3_ARATH Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1 Back     alignment and function desciption
 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/628 (60%), Positives = 479/628 (76%), Gaps = 33/628 (5%)

Query: 2   SSSPAAQLQSSGSDSEGSGQACEQSIVIPNRFITIADSFEKKEHSWFVTSQIPTDLSIQV 61
           S S A +L+S G     +G  C +SI+ P+R +T+A+SFEKK+ SW+V SQIPTDLSIQV
Sbjct: 3   SVSAAERLKSFGD----AGPVCNKSIIFPSRVVTLANSFEKKDRSWYVKSQIPTDLSIQV 58

Query: 62  QDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIA 121
            D+TF  HK+PL+SKCGYI+ +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+ 
Sbjct: 59  NDITFKAHKFPLISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLD 118

Query: 122 FNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWA 181
            NP N+APLRCASE+L M+EE+E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWA
Sbjct: 119 LNPLNVAPLRCASEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWA 178

Query: 182 ENLQIVRRCCDSIAWKASRENSTTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTK 240
           ENLQIVRRCCD +AWKA  +N+  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  K
Sbjct: 179 ENLQIVRRCCDLLAWKACNDNNIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAK 238

Query: 241 PEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGK--EEVSVGQKEQRTI 298
           P+I GK IM YA  +LP ++ +LEG++GYG GK+ELQFS+ N G+  E  S+G +E +  
Sbjct: 239 PQITGKIIMKYADNFLPVINDDLEGIKGYGLGKNELQFSV-NRGRMEESNSLGCQEHKET 297

Query: 299 IENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPN 358
           IE+LV++LP Q   VSC F L+MLK ++VY+ASPALIS+LEKRVGM LEDAN  DLLIPN
Sbjct: 298 IESLVSVLPPQSGAVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPN 357

Query: 359 YKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEV 418
           +KNE+  +                RI ++FLMHEQQQ      +GK ++SK+LDNYLAE+
Sbjct: 358 FKNEEQQER--------------VRIFEFFLMHEQQQV-----LGKPSISKLLDNYLAEI 398

Query: 419 ARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKL 478
           A+DP L ITKFQVLAE LPENA  CHDGLYRAID +LK+HPSLS+HDRRRLCK MNCEKL
Sbjct: 399 AKDPYLPITKFQVLAEMLPENAWKCHDGLYRAIDMFLKTHPSLSDHDRRRLCKTMNCEKL 458

Query: 479 SLDACTHAAQNDRLPLRTVV----QVLFSEQVKMRTAMQETEPALQCDNS-EQGDTQPST 533
           SLDAC HAAQNDRLPLRT+V    QVLFSEQVKMR  MQ+  P  + +NS  + D + S 
Sbjct: 459 SLDACLHAAQNDRLPLRTIVQINTQVLFSEQVKMRMMMQDKLPEKEEENSGGREDKRMSR 518

Query: 534 SIE-IKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSK 592
             E IK L+EELENVK +M+ELQ DY+ELQ+EYE+LS+K K   +W L W+K+K SF +K
Sbjct: 519 DNEIIKTLKEELENVKKKMSELQSDYNELQQEYERLSSKQKSSHNWGLRWQKVKKSFQTK 578

Query: 593 ADADETGNRRQTFNSTSRRTSFRRRPSL 620
            + +ET  R +  +ST +RTSFRRR S+
Sbjct: 579 REDEETRERTRRRSSTGQRTSFRRRMSM 606
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2 Back     alignment and function description
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2 Back     alignment and function description
>sp|Q9SA69|Y1301_ARATH BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1 Back     alignment and function description
>sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
255580882643 Root phototropism protein, putative [Ric 0.983 0.950 0.709 0.0
429326652637 transposase [Populus tomentosa] 0.964 0.940 0.713 0.0
356528467626 PREDICTED: putative BTB/POZ domain-conta 0.956 0.948 0.690 0.0
356511091629 PREDICTED: putative BTB/POZ domain-conta 0.953 0.941 0.683 0.0
224093756544 predicted protein [Populus trichocarpa] 0.858 0.979 0.743 0.0
224081144540 predicted protein [Populus trichocarpa] 0.866 0.996 0.737 0.0
449483335616 PREDICTED: putative BTB/POZ domain-conta 0.962 0.970 0.626 0.0
449439029616 PREDICTED: putative BTB/POZ domain-conta 0.962 0.970 0.626 0.0
359497198571 PREDICTED: putative BTB/POZ domain-conta 0.785 0.854 0.737 0.0
72384490630 80A08_21 [Brassica rapa subsp. pekinensi 0.991 0.977 0.607 0.0
>gi|255580882|ref|XP_002531260.1| Root phototropism protein, putative [Ricinus communis] gi|223529145|gb|EEF31124.1| Root phototropism protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/617 (70%), Positives = 507/617 (82%), Gaps = 6/617 (0%)

Query: 10  QSSGSDSEGSGQ--ACEQSIVIPNRFITIADSFEKKEHSWFVTSQIPTDLSIQVQDVTFT 67
            SS SDS+G  Q    ++SI+IP + +   D FEKKE SWFVTSQIPTDLS+QVQD+TFT
Sbjct: 26  HSSESDSDGVDQDHGHDKSIIIPTKVVATTDIFEKKEDSWFVTSQIPTDLSVQVQDITFT 85

Query: 68  VHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNI 127
           VHKYPL+SKCGYI RLELQPSISN GY+LKLENFPGGSE FEIILKFCYGLP+  NPNNI
Sbjct: 86  VHKYPLVSKCGYIGRLELQPSISNFGYELKLENFPGGSEAFEIILKFCYGLPLDLNPNNI 145

Query: 128 APLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIV 187
           A LRCASEFL+MSEE EDGNLISKTEAFLT V+LSSWK+TITVLKSC+ LSPWAENLQIV
Sbjct: 146 AALRCASEFLEMSEELEDGNLISKTEAFLTFVVLSSWKDTITVLKSCETLSPWAENLQIV 205

Query: 188 RRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKC 247
           RRCCDSIAWKASR+NST  +I N +GWWFDDVATL  DHFMRI+T ++ KG KPEI GKC
Sbjct: 206 RRCCDSIAWKASRDNSTVHNIINEEGWWFDDVATLRTDHFMRIVTAVRAKGAKPEITGKC 265

Query: 248 IMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQ-KEQRTIIENLVNLL 306
           IMHYA +WLPGMDVELEGLRGY YGK+ELQF IL    ++  VG  KEQ+ IIE++V LL
Sbjct: 266 IMHYASRWLPGMDVELEGLRGYRYGKNELQFGILCGRNKDEGVGHSKEQKNIIESIVRLL 325

Query: 307 PHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAK 366
           P Q E V CKF L+MLKMA+VY+ASPALISELE RVG+ LE+A+ NDLLIPNYK ED  K
Sbjct: 326 PPQPEAVPCKFLLKMLKMAIVYSASPALISELEMRVGLTLENASVNDLLIPNYKTEDQVK 385

Query: 367 -LNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLS 425
            +  PEH  M+NI+VVQRI++YFLMHEQ+QQQ Q   GK+NVSK++DNYLAE+ARDPNLS
Sbjct: 386 TMKHPEHCVMYNIEVVQRIVEYFLMHEQEQQQLQPMSGKSNVSKLMDNYLAEIARDPNLS 445

Query: 426 ITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTH 485
           ITKFQVLAE LPENARTC DGLYR+IDTYLK+HPSLSEHDR+RLCK+MNCEKLSLDAC H
Sbjct: 446 ITKFQVLAEVLPENARTCDDGLYRSIDTYLKTHPSLSEHDRKRLCKVMNCEKLSLDACMH 505

Query: 486 AAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELE 545
           AAQNDRLP+RTV+QVLFSEQVKMR AM+  EPA   +NSEQ  +Q ST  EI  L+ ELE
Sbjct: 506 AAQNDRLPMRTVIQVLFSEQVKMREAMRGKEPAASGNNSEQEVSQTSTKAEIMTLKTELE 565

Query: 546 NVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNS--FHSKADADETGNRRQ 603
           NVK +MAELQ+DYSELQ EY K+++K + +  WS  W+KI+ S  F  K +A+ET   +Q
Sbjct: 566 NVKAKMAELQRDYSELQHEYVKINSKQRHLPGWSFNWKKIRKSSLFSRKTEAEETSEGQQ 625

Query: 604 TFNSTSRRTSFRRRPSL 620
             N    + +FRRR S+
Sbjct: 626 RSNPLISKINFRRRQSI 642

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|429326652|gb|AFZ78666.1| transposase [Populus tomentosa] Back     alignment and taxonomy information
>gi|356528467|ref|XP_003532824.1| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max] Back     alignment and taxonomy information
>gi|356511091|ref|XP_003524263.1| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max] Back     alignment and taxonomy information
>gi|224093756|ref|XP_002309978.1| predicted protein [Populus trichocarpa] gi|222852881|gb|EEE90428.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224081144|ref|XP_002306309.1| predicted protein [Populus trichocarpa] gi|222855758|gb|EEE93305.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449483335|ref|XP_004156559.1| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439029|ref|XP_004137290.1| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359497198|ref|XP_002262774.2| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|72384490|gb|AAZ67606.1| 80A08_21 [Brassica rapa subsp. pekinensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
TAIR|locus:2145387607 DOT3 "DEFECTIVELY ORGANIZED TR 0.571 0.584 0.600 1e-189
TAIR|locus:2173418 746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.257 0.214 0.552 6.1e-130
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.523 0.488 0.383 7.9e-96
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.819 0.861 0.380 2.2e-89
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.560 0.587 0.34 7.2e-88
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.824 0.847 0.346 8.9e-86
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.417 0.387 0.409 2.5e-85
TAIR|locus:2082132651 AT3G44820 [Arabidopsis thalian 0.589 0.562 0.318 7.3e-84
TAIR|locus:2077868582 AT3G08660 [Arabidopsis thalian 0.455 0.486 0.362 4.6e-78
TAIR|locus:2077763617 AT3G08570 [Arabidopsis thalian 0.824 0.829 0.343 1.3e-77
TAIR|locus:2145387 DOT3 "DEFECTIVELY ORGANIZED TRIBUTARIES 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1172 (417.6 bits), Expect = 1.0e-189, Sum P(2) = 1.0e-189
 Identities = 224/373 (60%), Positives = 290/373 (77%)

Query:    23 CEQSIVIPNRFITIADSFEKKEHSWFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIAR 82
             C +SI+ P+R +T+A+SFEKK+ SW+V SQIPTDLSIQV D+TF  HK+PL+SKCGYI+ 
Sbjct:    20 CNKSIIFPSRVVTLANSFEKKDRSWYVKSQIPTDLSIQVNDITFKAHKFPLISKCGYISS 79

Query:    83 LELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEE 142
             +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+  NP N+APLRCASE+L M+EE
Sbjct:    80 IELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCASEYLYMTEE 139

Query:   143 YEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASREN 202
             +E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWAENLQIVRRCCD +AWKA  +N
Sbjct:   140 FEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDLLAWKACNDN 199

Query:   203 STTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDV 261
             +  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  KP+I GK IM YA  +LP ++ 
Sbjct:   200 NIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYADNFLPVIND 259

Query:   262 ELEGLRGYGYGKHELQFSILNAGK--EEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFL 319
             +LEG++GYG GK+ELQFS+ N G+  E  S+G +E +  IE+LV++LP Q   VSC F L
Sbjct:   260 DLEGIKGYGLGKNELQFSV-NRGRMEESNSLGCQEHKETIESLVSVLPPQSGAVSCHFLL 318

Query:   320 QMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNID 379
             +MLK ++VY+ASPALIS+LEKRVGM LEDAN  DLLIPN+KNE+  +             
Sbjct:   319 RMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEEQQER------------ 366

Query:   380 VVQRIMDYFLMHE 392
                RI ++FLMHE
Sbjct:   367 --VRIFEFFLMHE 377
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
GO:0010087 "phloem or xylem histogenesis" evidence=IMP
GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP
GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP
GO:0048367 "shoot system development" evidence=IMP
GO:0080022 "primary root development" evidence=IMP
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077868 AT3G08660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LFU0DOT3_ARATHNo assigned EC number0.60190.95810.9802yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VII.1805.1
hypothetical protein (544 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
pfam03000249 pfam03000, NPH3, NPH3 family 1e-113
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 4e-05
pfam00651101 pfam00651, BTB, BTB/POZ domain 4e-04
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  338 bits (869), Expect = e-113
 Identities = 116/279 (41%), Positives = 174/279 (62%), Gaps = 41/279 (14%)

Query: 214 WWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGK 273
           WWF+D++ L ID F R+IT +K +G KPE+IG+ +MHYAKKWLPG               
Sbjct: 3   WWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPG--------------- 47

Query: 274 HELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPA 333
                  L+         ++EQR ++E +V+LLP +   VSC F  ++L+ A++  AS +
Sbjct: 48  -------LSRSGSSEEDSEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASES 100

Query: 334 LISELEKRVGMMLEDANANDLLIPN-YKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHE 392
              ELE+R+G+ L+ A  +DLLIP+ Y  E+          T++++D+VQRI++ FL  +
Sbjct: 101 CREELERRIGLQLDQATLDDLLIPSGYSGEE----------TLYDVDLVQRILEVFLSRD 150

Query: 393 QQQQQK--------QQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCH 444
              Q            +     V+K++D YLAE+A DPNL ++KF  LAE++P++AR  H
Sbjct: 151 AATQSSDDEDSEASPSSSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSH 210

Query: 445 DGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDAC 483
           DGLYRAID YLK+HP+LSE +++RLC+LM+C+KLS +AC
Sbjct: 211 DGLYRAIDIYLKAHPNLSESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 621
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.97
PHA02713557 hypothetical protein; Provisional 99.96
PHA02790480 Kelch-like protein; Provisional 99.95
PHA03098534 kelch-like protein; Provisional 99.93
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.71
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.61
KOG4350620 consensus Uncharacterized conserved protein, conta 99.48
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.37
KOG4591280 consensus Uncharacterized conserved protein, conta 99.14
KOG4682488 consensus Uncharacterized conserved protein, conta 98.9
KOG07831267 consensus Uncharacterized conserved protein, conta 98.61
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.26
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.87
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.7
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.68
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 96.52
KOG2716230 consensus Polymerase delta-interacting protein PDI 96.45
KOG2838401 consensus Uncharacterized conserved protein, conta 95.85
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 95.2
KOG3473112 consensus RNA polymerase II transcription elongati 95.16
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.28
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 93.93
KOG2838401 consensus Uncharacterized conserved protein, conta 89.78
KOG0511516 consensus Ankyrin repeat protein [General function 86.91
KOG3840438 consensus Uncharaterized conserved protein, contai 82.5
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 81.08
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=8.7e-85  Score=663.87  Aligned_cols=248  Identities=47%  Similarity=0.891  Sum_probs=223.0

Q ss_pred             cccchhcccccCHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccc
Q 007015          212 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVG  291 (621)
Q Consensus       212 ~dwW~eDl~~Ls~d~~~rlI~am~~~~~~ee~I~~al~~Yak~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (621)
                      .||||||++.|++++|+|||.+|+++|+++++|+++|++||++|||++.++...   ...            .....+..
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~---~~~------------~~~~~~~~   65 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSG---SSS------------SAESSTSS   65 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccc---ccc------------cccccchh
Confidence            479999999999999999999999999999999999999999999998543111   000            01223456


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhccCCHHHHHHHHHHHhhhhcccccccccccCCCCccccccCCCC
Q 007015          292 QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPE  371 (621)
Q Consensus       292 ~~~qr~LLE~Iv~lLP~~k~~vsc~FLf~LLR~A~~l~as~~cr~~LE~RIg~qLdqAtl~DLLIPs~~~~~~~~~~~~~  371 (621)
                      ..+||.+||+||+|||.+++++||+|||+|||+|+++++|++||.+||+|||+|||||||+|||||+ ++.++       
T Consensus        66 ~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~-------  137 (258)
T PF03000_consen   66 ENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGE-------  137 (258)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcc-------
Confidence            7899999999999999999999999999999999999999999999999999999999999999999 33332       


Q ss_pred             CccccchHHHHHHHHHHHhhhhhh----------hhhhcchhhHHHHhhHHHHHhhhcCCCCCChhHHHHHHHhcCCccc
Q 007015          372 HNTMHNIDVVQRIMDYFLMHEQQQ----------QQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENAR  441 (621)
Q Consensus       372 ~~tlyDvd~V~riv~~Fl~~~~~~----------~~~~~~~~~~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~aR  441 (621)
                       .|+||||+|+|||++||.+++..          ...++..++.+||||||+||+|||+|+||+|+||++|||+||++||
T Consensus       138 -~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR  216 (258)
T PF03000_consen  138 -DTLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSAR  216 (258)
T ss_pred             -cchhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhh
Confidence             29999999999999999984321          1125678999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHhhCCCCCHHHHHhhhcccccCCCCHHHh
Q 007015          442 TCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDAC  483 (621)
Q Consensus       442 ~~~DgLYRAIDiYLK~Hp~lse~Er~~lCr~~dc~KLS~eAc  483 (621)
                      ++|||||||||||||+||+||++||++||++|||||||+|||
T Consensus       217 ~~hD~LYrAID~YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  217 PSHDGLYRAIDIYLKAHPGLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             hccchHHHHHHHHHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 69.9 bits (170), Expect = 1e-12
 Identities = 81/531 (15%), Positives = 163/531 (30%), Gaps = 142/531 (26%)

Query: 108 FEI-ILKFCYG--LPIAFNPNNIAPLRCASEFLDM------SEEYED----GNLISKTEA 154
           FE    ++ Y   L + F    +    C  +  DM       EE +      + +S T  
Sbjct: 9   FETGEHQYQYKDILSV-FEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTL- 65

Query: 155 FLTLVILSSWKETI-----TVLKSCKNLSPW-AENLQIVRRCCDSIAWKASRENSTTEDI 208
            L   +LS  +E +      VL+   N   +    ++  +R              T   I
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLR--INY-KFLMSPIKTEQR---------QPSMMTRMYI 113

Query: 209 ANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWL----PGMDVELE 264
             R   + D+          ++     V  ++ +   K      ++ L    P  +V ++
Sbjct: 114 EQRDRLYNDN----------QVFAKYNV--SRLQPYLK-----LRQALLELRPAKNVLID 156

Query: 265 GLRGYGYGKHELQFSILNAGKEE---------VSVGQ-KEQRTIIENLVNLLPHQDEGVS 314
           G+   G GK  +   +  + K +         +++       T++E L  LL +Q +   
Sbjct: 157 GVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNW 213

Query: 315 CKFFLQMLKMAMVYNASPALISELEKRVGMMLEDAN-ANDLLIPNYKNEDHAKLNSPEHN 373
                    +          I  ++  +  +L+     N LL+                 
Sbjct: 214 TSRSDHSSNI-------KLRIHSIQAELRRLLKSKPYENCLLV----------------- 249

Query: 374 TMHNIDVVQ--RIMDYF------LMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLS 425
               +  VQ  +  + F      L+  + +Q        T     LD++   +  D   S
Sbjct: 250 ----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 426 I-TKF-QVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLC-KLMNCEKLSLDA 482
           +  K+     + LP    T +      I   ++   +  ++ +   C KL    + SL+ 
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 483 CTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQ---CDNSEQGDTQPSTSIEIKN 539
              A         +V    F     +          L     D  +          ++  
Sbjct: 366 LEPAEYRKMFDRLSV----FPPSAHI------PTILLSLIWFDVIKS---------DVMV 406

Query: 540 LREELENVKTRMAELQKD---------YSELQREYEKLSNKHK-IVSSWSL 580
           +  +L   K  + E Q           Y EL+ + E     H+ IV  +++
Sbjct: 407 VVNKL--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query621
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.96
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.96
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.88
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.87
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.86
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.86
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.85
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.85
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.85
2vpk_A116 Myoneurin; transcription regulation, transcription 99.85
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.85
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.85
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.84
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.84
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.83
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.83
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.83
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.83
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.81
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.76
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.46
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.27
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.12
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.96
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.41
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.4
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.26
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.77
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.73
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 97.52
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.35
3kvt_A115 Potassium channel protein SHAW; tetramerization do 95.4
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 93.76
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 92.96
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 92.14
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 91.95
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 83.57
3vmx_A48 Voltage-gated hydrogen channel 1; coiled-coil, ION 82.8
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.96  E-value=6.3e-31  Score=265.08  Aligned_cols=230  Identities=13%  Similarity=0.161  Sum_probs=168.4

Q ss_pred             hhhhccCCCeeEEEEEcCeEEeecccccccccHHHHHhhcCCCC--CCCcccEEecCCCCCHHHHHHHHHhhcCCCeeec
Q 007015           46 SWFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSI--SNLGYDLKLENFPGGSETFEIILKFCYGLPIAFN  123 (621)
Q Consensus        46 ~w~r~~~~~~DV~I~V~g~~F~~HK~vLas~S~YFr~lf~~~~~--e~~~~~v~L~~~pGG~~~felll~FcYt~~i~It  123 (621)
                      ..++.++.+|||+|.|||+.|++||.+|+++|+||++||+.++.  ++...+|.|++++  +++|+.+++|+|||++.++
T Consensus        23 ~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~  100 (256)
T 3hve_A           23 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLN  100 (256)
T ss_dssp             HTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCccc
Confidence            36788999999999999999999999999999999999998765  4466789999999  9999999999999999999


Q ss_pred             CCchhhHHHhhcccCcccccccccHHHHHHHHHHHHhhhhhhhHHHHhhhhhchHHHHHHhhhhHhhHHHHHHHhcccC-
Q 007015          124 PNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASREN-  202 (621)
Q Consensus       124 ~~NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l~~sw~~si~~L~~C~~l~~~Ae~~~iv~rCidsLa~ka~~~~-  202 (621)
                      .+||..++.||++|||++      |++.|+.||.+.+         ...||..++.+|+.|++     +.|..++.... 
T Consensus       101 ~~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l---------~~~n~~~i~~~A~~~~~-----~~L~~~~~~~i~  160 (256)
T 3hve_A          101 EDTIQDVVQAADLLLLTD------LKTLCCEFLEGCI---------AAENCIGIRDFALHYCL-----HHVHYLATEYLE  160 (256)
T ss_dssp             -CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTC---------CSSTTHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHChHH------HHHHHHHHHHhhC---------CHhhHHHHHHHHHHcCc-----HHHHHHHHHHHH
Confidence            999999999999999998      8999999999988         57899999999999985     33333332221 


Q ss_pred             ccchhhhcccccchhcccccCHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhc
Q 007015          203 STTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILN  282 (621)
Q Consensus       203 ~~~~~l~~~~dwW~eDl~~Ls~d~~~rlI~am~~~~~~ee~I~~al~~Yak~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (621)
                      .+|..+     +-.++|..|+.+.+..+|+.......+|+.|++++++|+++..+.                        
T Consensus       161 ~~f~~v-----~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~------------------------  211 (256)
T 3hve_A          161 THFRDV-----SSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEI------------------------  211 (256)
T ss_dssp             HHHHHH-----TTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CC------------------------
T ss_pred             HHHHHH-----hCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHH------------------------
Confidence            122222     226899999999999999765554457889999999998654321                        


Q ss_pred             cCccccccchHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhccCC-HHHHHHHHH
Q 007015          283 AGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNAS-PALISELEK  340 (621)
Q Consensus       283 ~~~~~~~~~~~~qr~LLE~Iv~lLP~~k~~vsc~FLf~LLR~A~~l~as-~~cr~~LE~  340 (621)
                              +...-..|++.|+-      +.+|..||...+.....+..+ +.|+.-|++
T Consensus       212 --------R~~~~~~ll~~VRf------~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          212 --------RKVHMKDVMSALWV------SGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             --------STTTHHHHHHHHHH------HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             --------HHHHHHHHHHhCCC------CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence                    22334679999985      357788999999988888888 689988874
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query621
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.87
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.86
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.55
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.21
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.76
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.21
d1t1da_100 Shaker potassium channel {California sea hare (Apl 95.06
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 92.73
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 90.98
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.3e-23  Score=182.98  Aligned_cols=105  Identities=23%  Similarity=0.322  Sum_probs=96.4

Q ss_pred             hhhhccCCCeeEEEEEcCeEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhcCCCeeecCC
Q 007015           46 SWFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPN  125 (621)
Q Consensus        46 ~w~r~~~~~~DV~I~V~g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcYt~~i~It~~  125 (621)
                      +-+|.++.+|||+|.|+|++|++||.+|+++|+||++||...+.++....+.+.+++  |++|+.+++|+|||++.|+.+
T Consensus        17 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~--~~~f~~ll~~~Ytg~~~i~~~   94 (122)
T d1r29a_          17 NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYTSRLNLREG   94 (122)
T ss_dssp             HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHHSCCCCCTT
T ss_pred             HHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccC--HHHHHHHHhhhcCCeecCchh
Confidence            357889999999999999999999999999999999999988777555556668899  999999999999999999999


Q ss_pred             chhhHHHhhcccCcccccccccHHHHHHHHHHH
Q 007015          126 NIAPLRCASEFLDMSEEYEDGNLISKTEAFLTL  158 (621)
Q Consensus       126 NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~  158 (621)
                      ||..++.||++|||++      |++.|++||+.
T Consensus        95 ~v~~ll~~A~~l~i~~------L~~~C~~~L~~  121 (122)
T d1r29a_          95 NIMAVMATAMYLQMEH------VVDTCRKFIKA  121 (122)
T ss_dssp             THHHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHCcHH------HHHHHHHHHHh
Confidence            9999999999999997      99999999974
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure