Citrus Sinensis ID: 007016

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-
MSRSPSFSVKSELSLKPDPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFASRASSGKISGRPEGFGLQQLSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQEIQFVFTTFSTISILDKEL
ccccccccccccccccccHHHHHHHHEEEEEEEEEccccccccccccccccccHHHcHHcccccccccccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEEEEEEcccccccccccEEEEEEEEccccHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHcccccccccccccccccccccHHccccccccccccEEEcccHHHHHHHHcccccEEEccccccccccHHcccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHcccccccccHHHHHHHHHccccccccccHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccccccccccccccccccHHHHHHHHHHEEEEEEEcccccEEEEEcccccccHHHHcHEHHEcccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccHHccccccccccccccccccEEEEEEEEEEccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccEEEEcEccEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHcccccccccccEEEEEcHHHHHHHccccccccccEEEEcccHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccEEccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHccEEEEEEHcEccccccc
msrspsfsvkselslkpdperMQRWVVAFCTIRFdleqgqliedcyppgcltqdeelevayssfpdsvsqhqnrssihDCIFFFrfqrhknlpqgnvtpseiteindkitsselTEEKLLKRSksfssskgsryfygyVFNRQRHDERlkrggeqkSLVIlshgpfssvfrpllqimgplyfDVGKKAIEHIASYvsiwpspvpgklmelpignamlkvnlppahslplesgmlseesaasvapflpynqsipqglfhdsdlfGTFRGLLLQLWVLWELLLigepilviaptppqcCEAVASLVSLIAPllcsidfrpyftihdpqfahlnslqegdtfppmvlgvTNLFFLKALrkiphivsvgspapnsnrvAFASrassgkisgrpegfglqqlslkfspssllNVVKLRregplclmteHKEAIWssyaattkpdtsILNRLIdagmsprveeSMSVVNNEILRRHFLELTtnflapfgpyfrtttpsegsspfvdpptlppfnaneFLSSLQARGVGKFLSKRMRSNWLDLYRRFlkgpnfmpwFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQEIQFVFTTFSTISILDKEL
msrspsfsvkselslkpdpermQRWVVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKnlpqgnvtpseiteindkitsselteekllkrsksfssskgsryfyGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIvsvgspapnsnRVAFASRASSGKISGRPEGFGLQQLSLKFSPSSLLNVVKLRREGPLCLMTEHKEAiwssyaattkpdtsILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQEIQFVFTTFSTISILDKEL
MSRSPSFSVKSELSLKPDPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEINDKITSSELTEEkllkrsksfssskgsryfygYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGlllqlwvlwelllIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFASRASSGKISGRPEGFGLQQLSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFqrrraaaeqeqHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQEIQFVFTTFSTISILDKEL
**********************QRWVVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYS*************SIHDCIFFFRFQRHK******************************************RYFYGYVFNRQR***********KSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNL********************VAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSV********************************LSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTSILNRLIDAGM******SMSVVNNEILRRHFLELTTNFLAPFGPYFRT**********************EFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQEIQFVFTTFSTISIL****
*********************MQRWVVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFR*********************************************GSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLP***********************LPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVG********************************************************TEHKEAIWSSYAATTKPDTSIL********************NEILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQA**********MRSNWLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQ**********TISILD***
****************PDPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSF*********RSSIHDCIFFFRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLL*********KGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFASRASSGKISGRPEGFGLQQLSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTT*********VDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRR*********RLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQEIQFVFTTFSTISILDKEL
***************KPDPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHK********************************SKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPA******************APFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSP*************************************SLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQEIQFVFTTFSTISIL****
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MSRSPSFSVKSELSLKPDPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFASRASSGKISGRPEGFGLQQLSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQEIQFVFTTFSTISILDKEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query621 2.2.26 [Sep-21-2011]
Q8IWF6608 Protein DENND6A OS=Homo s yes no 0.792 0.809 0.336 1e-73
Q8BH65605 Protein DENND6A OS=Mus mu yes no 0.792 0.813 0.334 1e-73
Q5F3L4584 Protein DENND6A OS=Gallus yes no 0.795 0.845 0.314 1e-71
Q9D9V7585 Protein DENND6B OS=Mus mu no no 0.819 0.870 0.311 1e-70
Q8NEG7585 Protein DENND6B OS=Homo s no no 0.809 0.859 0.310 2e-70
Q54VA9715 Protein DENND6 homolog OS yes no 0.830 0.721 0.293 6e-66
>sp|Q8IWF6|DEN6A_HUMAN Protein DENND6A OS=Homo sapiens GN=DENND6A PE=1 SV=1 Back     alignment and function desciption
 Score =  278 bits (710), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 191/568 (33%), Positives = 279/568 (49%), Gaps = 76/568 (13%)

Query: 25  WVVAFCTIRFDLEQGQLIEDCYPPGC-LTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFF 83
           W+   C + FDLE GQ +E  YP    LT  E+  + Y SFPDS     N   + D  F 
Sbjct: 61  WLHCVCVVGFDLELGQAVEVIYPQHSKLTDREKTNICYLSFPDS-----NSGCLGDTQFC 115

Query: 84  FRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQ 143
           FRF++        V+   + +  DK     L               K   YFYGYV+ RQ
Sbjct: 116 FRFRQSSG---RRVSLHCLLDQFDKDLPVYL--------------KKDPAYFYGYVYFRQ 158

Query: 144 RHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPV 203
             D+ LKRG  QKSLV++S  P+   F  +L+ + P YF+  +  +E   + V  WP+PV
Sbjct: 159 VRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPV 218

Query: 204 PGKLMELPIGNAMLKVNLPPAHSLPLESGM--LSEESAASVAPFLPYNQSIPQGLFHDSD 261
           PGK + LPI   ++KV +P  H  P  + +  L+++   +++  LP          H+ D
Sbjct: 219 PGKTLHLPIMGVVMKVRIPTCHDKPGTTQIVQLTQQVDTNISVILP--------TVHEVD 270

Query: 262 LFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFT 321
           +F  F  + L   +LWEL+L+GEP++V+AP+P +  E V +LV+ I+PL    DFRPYFT
Sbjct: 271 IFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFT 330

Query: 322 IHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFASRAS 381
           IHD +F    +  +    P ++LGVTN FF K L+  PHI+ +G   P            
Sbjct: 331 IHDSEFKEYTTRTQAP--PSVILGVTNPFFAKTLQHWPHIIRIGDLKP------------ 376

Query: 382 SGKISGRPEGFGLQQLSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTS 441
           +G+I         Q    K      L+                K  +++SY      D  
Sbjct: 377 TGEIPK-------QVKVKKLKNLKTLD---------------SKPGVYTSYKPYLNRDEE 414

Query: 442 ILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGS-SPFVD 500
           I+ +L       R  E+ SV    ILRR+FLELT +F+ P   Y  +  P + S SP+  
Sbjct: 415 IIKQLQKGVQQKRPSEAQSV----ILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKS 470

Query: 501 PPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAAAEQE 560
           PP L  F   EF+ +L+    G  L+ R++ +W+ LYR FLK PNF  WF+ RR    Q+
Sbjct: 471 PPQLRQFLPEEFMKTLEK--TGPQLTSRIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQK 528

Query: 561 QHRLWRQARMRTDIQQLIAKMSELESVD 588
              L  +A    D+   I K +E+E+VD
Sbjct: 529 LEALHLEALCEEDLLLWIQKHTEVETVD 556

Homo sapiens (taxid: 9606)
>sp|Q8BH65|DEN6A_MOUSE Protein DENND6A OS=Mus musculus GN=Dennd6a PE=1 SV=1 Back     alignment and function description
>sp|Q5F3L4|DEN6A_CHICK Protein DENND6A OS=Gallus gallus GN=DENND6A PE=2 SV=1 Back     alignment and function description
>sp|Q9D9V7|DEN6B_MOUSE Protein DENND6B OS=Mus musculus GN=Dennd6b PE=2 SV=3 Back     alignment and function description
>sp|Q8NEG7|DEN6B_HUMAN Protein DENND6B OS=Homo sapiens GN=DENND6B PE=2 SV=1 Back     alignment and function description
>sp|Q54VA9|F116_DICDI Protein DENND6 homolog OS=Dictyostelium discoideum GN=DDB_G0280481 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
255541822674 conserved hypothetical protein [Ricinus 0.966 0.890 0.812 0.0
359491421711 PREDICTED: protein FAM116A-like [Vitis v 0.933 0.815 0.797 0.0
147792310615 hypothetical protein VITISV_030529 [Viti 0.909 0.918 0.787 0.0
297734168630 unnamed protein product [Vitis vinifera] 0.898 0.885 0.773 0.0
297842139623 hypothetical protein ARALYDRAFT_476531 [ 0.917 0.914 0.751 0.0
15219585623 uncharacterized protein [Arabidopsis tha 0.921 0.918 0.747 0.0
222423152623 AT1G73930 [Arabidopsis thaliana] 0.921 0.918 0.745 0.0
356563097656 PREDICTED: protein FAM116A-like [Glycine 0.922 0.873 0.769 0.0
449440913642 PREDICTED: protein DENND6B-like [Cucumis 0.919 0.889 0.756 0.0
224133008626 predicted protein [Populus trichocarpa] 0.922 0.915 0.776 0.0
>gi|255541822|ref|XP_002511975.1| conserved hypothetical protein [Ricinus communis] gi|223549155|gb|EEF50644.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/603 (81%), Positives = 546/603 (90%), Gaps = 3/603 (0%)

Query: 1   MSRSPSFSVKSELSLKPDPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVA 60
           MSRSPSFSVK EL LKPDPE +Q+WVVAFC IRFDLEQGQLIE+CYPPG L+ +EEL+VA
Sbjct: 1   MSRSPSFSVKPELDLKPDPESLQQWVVAFCAIRFDLEQGQLIEECYPPGILSNEEELDVA 60

Query: 61  YSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLL 120
           +SSFPDSVSQ QNRSSIHDCIFFFR +R K   + NVT SEI E++    SS+  EEK+ 
Sbjct: 61  FSSFPDSVSQQQNRSSIHDCIFFFRIRRRKGSEEKNVTTSEIIEVDSNEVSSKSIEEKVT 120

Query: 121 KRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPL 180
           +RS S  + K  ++ YGYVFNRQRHDERLKRGGEQKS+VILSH P+SSVFRPLLQIMGPL
Sbjct: 121 QRSNSGKNDKNFKFLYGYVFNRQRHDERLKRGGEQKSVVILSHDPYSSVFRPLLQIMGPL 180

Query: 181 YFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAA 240
           YFD+GKKA+EHIA+YVS+WP+P+PGKLMELPIGNAMLKVNLPPAHSLPLE+GM  EESA+
Sbjct: 181 YFDIGKKALEHIAAYVSMWPAPLPGKLMELPIGNAMLKVNLPPAHSLPLENGMF-EESAS 239

Query: 241 SVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAV 300
           S+APFLP NQSIPQGLFHDSD+FG+FRG+LLQLWVLWELLLIGEPIL+I PTPPQC EAV
Sbjct: 240 SIAPFLPTNQSIPQGLFHDSDIFGSFRGILLQLWVLWELLLIGEPILIIGPTPPQCSEAV 299

Query: 301 ASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPH 360
           ASLVSL+APLLCS+DFRPYFTIHDP+FA+LNSLQEG++FPPMVLGVTNLFFLK+LR IPH
Sbjct: 300 ASLVSLVAPLLCSVDFRPYFTIHDPEFAYLNSLQEGNSFPPMVLGVTNLFFLKSLRNIPH 359

Query: 361 IVSVGSPAPNSNRVAFASRASSGKISGRPEGFGLQQLSL-KFSPSSLLNVVKLRREGPLC 419
           IVSVGSPA NSNR+ F++R S+G+I GRPEG GLQQLSL KFSP+SLLN VKLRR+GPLC
Sbjct: 360 IVSVGSPASNSNRLPFSNR-STGRIPGRPEGLGLQQLSLKKFSPASLLNAVKLRRDGPLC 418

Query: 420 LMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFL 479
           LMTEHKEAIWS+YAATTKPDTSILNRLID GMSPRVEESMSVVNNEILRRHFLELTTNFL
Sbjct: 419 LMTEHKEAIWSTYAATTKPDTSILNRLIDVGMSPRVEESMSVVNNEILRRHFLELTTNFL 478

Query: 480 APFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRR 539
           APFGPYFR TTP EGSSPFVDPP LPPFN +EFL+SL ARGVGKFLSKRMRSNWLDLY+R
Sbjct: 479 APFGPYFRATTPFEGSSPFVDPPPLPPFNTDEFLASLSARGVGKFLSKRMRSNWLDLYKR 538

Query: 540 FLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQ 599
           FLKGPNF+PWF+RRR  AEQEQHRLW+QARM+TDIQ  I KMSELE VD+FNA+ERHL  
Sbjct: 539 FLKGPNFLPWFRRRRTVAEQEQHRLWKQARMKTDIQLFIFKMSELEVVDSFNAIERHLNG 598

Query: 600 EIQ 602
           EIQ
Sbjct: 599 EIQ 601

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491421|ref|XP_002275350.2| PREDICTED: protein FAM116A-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147792310|emb|CAN70280.1| hypothetical protein VITISV_030529 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734168|emb|CBI15415.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297842139|ref|XP_002888951.1| hypothetical protein ARALYDRAFT_476531 [Arabidopsis lyrata subsp. lyrata] gi|297334792|gb|EFH65210.1| hypothetical protein ARALYDRAFT_476531 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15219585|ref|NP_177533.1| uncharacterized protein [Arabidopsis thaliana] gi|79321259|ref|NP_001031278.1| uncharacterized protein [Arabidopsis thaliana] gi|12325141|gb|AAG52517.1|AC016662_11 unknown protein; 75644-77831 [Arabidopsis thaliana] gi|222424052|dbj|BAH19987.1| AT1G73930 [Arabidopsis thaliana] gi|332197405|gb|AEE35526.1| uncharacterized protein [Arabidopsis thaliana] gi|332197406|gb|AEE35527.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222423152|dbj|BAH19555.1| AT1G73930 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356563097|ref|XP_003549802.1| PREDICTED: protein FAM116A-like [Glycine max] Back     alignment and taxonomy information
>gi|449440913|ref|XP_004138228.1| PREDICTED: protein DENND6B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224133008|ref|XP_002321463.1| predicted protein [Populus trichocarpa] gi|222868459|gb|EEF05590.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
TAIR|locus:2031506623 AT1G73930 "AT1G73930" [Arabido 0.752 0.749 0.754 1.9e-236
UNIPROTKB|G3X7L3580 FAM116B "Uncharacterized prote 0.357 0.382 0.395 1.1e-63
RGD|1306064602 Dennd6a "DENN/MADD domain cont 0.355 0.367 0.370 2.5e-63
UNIPROTKB|F1MBQ4608 FAM116A "Uncharacterized prote 0.357 0.365 0.371 9.2e-63
UNIPROTKB|Q8IWF6608 DENND6A "Protein DENND6A" [Hom 0.357 0.365 0.363 1.6e-62
MGI|MGI:2442980605 Dennd6a "DENN/MADD domain cont 0.360 0.370 0.375 5e-62
UNIPROTKB|Q5F3L4584 DENND6A "Protein DENND6A" [Gal 0.352 0.375 0.375 5.1e-62
UNIPROTKB|Q8NEG7585 DENND6B "Protein DENND6B" [Hom 0.357 0.379 0.373 5.5e-60
MGI|MGI:1916690585 Dennd6b "DENN/MADD domain cont 0.357 0.379 0.369 1e-59
UNIPROTKB|F1SGK8608 FAM116A "Uncharacterized prote 0.357 0.365 0.363 1.2e-59
TAIR|locus:2031506 AT1G73930 "AT1G73930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1907 (676.4 bits), Expect = 1.9e-236, Sum P(2) = 1.9e-236
 Identities = 354/469 (75%), Positives = 409/469 (87%)

Query:   138 YVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVS 197
             YVFNRQRHDERLKRGGEQKS+VILSH P+SSVFRPLLQI+GPLYFDVG KAIEHIA YVS
Sbjct:   106 YVFNRQRHDERLKRGGEQKSVVILSHTPYSSVFRPLLQIIGPLYFDVGNKAIEHIAGYVS 165

Query:   198 IWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLF 257
             +WP+PVPGKLMELPIGNAMLKVNLPPAHSLPLE+G+L EESA+S+AP LP NQS+PQGLF
Sbjct:   166 MWPAPVPGKLMELPIGNAMLKVNLPPAHSLPLENGILYEESASSMAPLLPTNQSVPQGLF 225

Query:   258 HDSDLFGTFRGXXXXXXXXXXXXXIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFR 317
             HD+DLFG +RG             IGEPIL+IAPTPPQC EAVA LVSL+APL CS+DFR
Sbjct:   226 HDADLFGIYRGLLLQLWTLWELLLIGEPILIIAPTPPQCSEAVACLVSLVAPLFCSVDFR 285

Query:   318 PYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFA 377
             PYFTIHDP FA LNSL+EGDTFPPMVLGVTN+FFLKALR IPH+VSVG+PAPNSNRVAF 
Sbjct:   286 PYFTIHDPGFARLNSLREGDTFPPMVLGVTNIFFLKALRNIPHVVSVGTPAPNSNRVAFT 345

Query:   378 SRASSGKISGRPEGFGLQQLSLK-FSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATT 436
             SR S+GK+S +PEG G+QQLSL+ FSP++LLN VKLRR+GPLCLMTEHKEA+W++Y+A T
Sbjct:   346 SR-SAGKLSVKPEGLGVQQLSLRRFSPTNLLNAVKLRRDGPLCLMTEHKEAVWTTYSAVT 404

Query:   437 KPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGSS 496
             KPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYF+   PS+GSS
Sbjct:   405 KPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFQVNAPSDGSS 464

Query:   497 PFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFXXXXXX 556
             P+V PP LP F A+EFLS+L  RGVGKFLSKRM+SNW DLYRRFL+GPNF PWF      
Sbjct:   465 PYVTPPALPSFGADEFLSNLSGRGVGKFLSKRMKSNWPDLYRRFLRGPNFSPWFQRRRAV 524

Query:   557 XXXXXHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQEIQ 605
                   RLWR ARM+TD++Q+ ++M+ELE+VD+FNA+E+H+ +E++ ++
Sbjct:   525 AEQEQRRLWRLARMKTDMRQITSQMNELEAVDSFNAIEKHISEEVKSLE 573
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
UNIPROTKB|G3X7L3 FAM116B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1306064 Dennd6a "DENN/MADD domain containing 6A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MBQ4 FAM116A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IWF6 DENND6A "Protein DENND6A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2442980 Dennd6a "DENN/MADD domain containing 6A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3L4 DENND6A "Protein DENND6A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NEG7 DENND6B "Protein DENND6B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1916690 Dennd6b "DENN/MADD domain containing 6B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGK8 FAM116A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017630001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (652 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
pfam08616114 pfam08616, SPA, Stabilisation of polarity axis 1e-09
pfam0779257 pfam07792, Afi1, Docking domain of Afi1 for Arf3 i 2e-08
>gnl|CDD|219936 pfam08616, SPA, Stabilisation of polarity axis Back     alignment and domain information 
 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 261 DLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPP--QCCEAVASLVSLIAPLLCSIDF-- 316
            L          + +LW  LL  + I+ ++  P   + C  V +L +LI+       F  
Sbjct: 3   SLLKLLGKFGPPIILLWNALLTQKRIIFLSYQPSAGEVCNFVLALCNLISGGGILRGFLN 62

Query: 317 ---RPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFF 351
               PY  + D     +++L++    P  + G TN  F
Sbjct: 63  NAIFPYVDLSD-----IDALEK---VPGYIAGTTNPIF 92

Yeast AFI1 (ARF3-interaction protein 1) has been shown to interact with the outer plaque of the spindle pole body. In Aspergillus nidulans the protein member is necessary for stabilisation of the polarity axes during septation. and in S. cerevisiae it functions as a polarisation-specific docking factor. Length = 114
>gnl|CDD|219579 pfam07792, Afi1, Docking domain of Afi1 for Arf3 in vesicle trafficking Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 621
KOG2432565 consensus Uncharacterized conserved protein [Funct 100.0
PF09794379 Avl9: Transport protein Avl9; InterPro: IPR018307 100.0
KOG3823630 consensus Uncharacterized conserved protein [Funct 99.95
PF08616113 SPA: Stabilization of polarity axis 99.91
PF07792145 Afi1: Docking domain of Afi1 for Arf3 in vesicle t 99.83
smart00799183 DENN Domain found in a variety of signalling prote 99.76
PF02141185 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The 99.6
PF09804280 DUF2347: Uncharacterized conserved protein (DUF234 99.26
KOG3569425 consensus RAS signaling inhibitor ST5 [Signal tran 99.12
KOG4704431 consensus Uncharacterized conserved protein [Funct 98.34
KOG3570 1588 consensus MAPK-activating protein DENN [Signal tra 98.05
KOG1090 1732 consensus Predicted dual-specificity phosphatase [ 97.13
KOG2080 1295 consensus Uncharacterized conserved protein, conta 95.34
KOG2127 1020 consensus Calmodulin-binding protein CRAG, contain 92.11
KOG2432 565 consensus Uncharacterized conserved protein [Funct 91.03
smart0080089 uDENN Domain always found upstream of DENN domain, 90.09
>KOG2432 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=5e-156  Score=1219.38  Aligned_cols=526  Identities=40%  Similarity=0.688  Sum_probs=479.8

Q ss_pred             CCCCCCcccccccCCCC---ChhhhhhhheeEEEEEeeCCCCceeeeeCCCCC-CChhhhhhcccccCCCCccccCCCCc
Q 007016            1 MSRSPSFSVKSELSLKP---DPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGC-LTQDEELEVAYSSFPDSVSQHQNRSS   76 (621)
Q Consensus         1 ~~~~~~~~~~~~~~~~~---~~~~~~~Wv~~icvV~FDle~Gq~vE~~YP~~~-ls~~Ek~~Ia~laFPDs~~~~~n~~~   76 (621)
                      |+|++++.|+.+++...   ||++|++|+||||||+||+|+||++|+|||+++ ||++|+.||||+|||||     ||+|
T Consensus         1 ~~re~~~~va~~~~~epd~e~w~~f~~WlHc~Cvv~FDLelGQalE~iYP~~~~ls~~E~~nicy~aFPDS-----Ns~~   75 (565)
T KOG2432|consen    1 REREHQNVVATNSNSEPDAEDWDNFSQWLHCFCVVTFDLELGQALEVIYPPDFMLSDQEKINICYLAFPDS-----NSSC   75 (565)
T ss_pred             CCCcccccccCCCCCCCCchhHHHHHHhheeeEEEEechhhcceeeeecCCccccccchheeeeEeecCCC-----Cccc
Confidence            79999999998887755   588899999999999999999999999999999 99999999999999999     6899


Q ss_pred             cceeEEEEEeecCCCCCCCCCCCCcccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEEEeeecCCCccCcceee
Q 007016           77 IHDCIFFFRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQK  156 (621)
Q Consensus        77 ~~Dt~F~Frir~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~kD~sv~RGy~QK  156 (621)
                      +|||+||||+|+..+...-..                      .+++ |..+..|..|+||||||||++|++++|||+||
T Consensus        76 ~~Dt~F~fR~R~~~~~~~~~~----------------------~dkd-~~~l~~d~~ylyG~VffRQ~~Dk~l~RGy~QK  132 (565)
T KOG2432|consen   76 MGDTKFHFRFRRTTRRDSLPG----------------------YDKD-PPALRQDGMYLYGFVFFRQTRDKTLKRGYFQK  132 (565)
T ss_pred             cccceEEEEEecccccccccc----------------------ccCC-CcccCCCCceeEEEEeeeeechhhhhhhhhhh
Confidence            999999999999754433110                      1223 66788999999999999999999999999999


Q ss_pred             EEEEEecCCchhhHHHHHHHhccccccccHHHHHHHHHHhccCCCCCCCCceeecccceEEEEeCCCCCCCCCccCCccc
Q 007016          157 SLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSE  236 (621)
Q Consensus       157 SiVIlS~lPy~~lf~~lL~~v~p~yF~~g~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~  236 (621)
                      ||||+|++||+++|++++..++|.||+.|+.++|+||+.|+.||.|++|.++|||++|.+++++||+.+++|...+.   
T Consensus       133 Svviis~LPf~~lf~tvl~~iap~yFe~gt~~ieaa~~~i~~Wp~p~~Gk~LELPll~c~~KI~lP~a~~~p~~ar~---  209 (565)
T KOG2432|consen  133 SVVIISFLPFFSLFYTVLFQIAPFYFELGTNAIEAACCGIDRWPAPVPGKTLELPLLGCKKKIRLPTAHSLPFEARK---  209 (565)
T ss_pred             ceEEEEecccccccchHHhhhchHHHhcccchhhhhhccccCCCCccCCceeeecccceeeeeeccccccCcccccc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999976541   


Q ss_pred             ccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhccCCCcCCCc
Q 007016          237 ESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDF  316 (621)
Q Consensus       237 ~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLl~epIlVia~sP~~~S~aV~aL~SLI~PL~y~gd~  316 (621)
                      +.+..   +...++.++++.+|++|||+++..+..|||+|||++|+||||+|+|++|++|||+|.++++||+||.||.|+
T Consensus       210 ~~~~e---~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLWELvL~gEPilivaptPs~~Se~V~~lv~liaPL~~c~df  286 (565)
T KOG2432|consen  210 TGAVE---LRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLWELVLLGEPILIVAPTPSHCSEIVQLLVRLIAPLIYCPDF  286 (565)
T ss_pred             cceee---eccCccccccCCcchhHHHHhhHHHHHHHHHHHHHHHhCCCeEEecCCchhhHHHHHHHHHHhhcceeCCCC
Confidence            11111   223467778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCccchhhhccCCCCCCCCeEEecchHHHHHhhCCCCeEEEcCCCCCCCcccccccccCCCCCCCCCCCccccc
Q 007016          317 RPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFASRASSGKISGRPEGFGLQQ  396 (621)
Q Consensus       317 RPYfTIhD~~F~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (621)
                      ||||||||++|++|++..  ..+|.+|||||||||.|+++|||||++||++++++++.                    ++
T Consensus       287 RPYFTIHDseF~e~tS~~--~sdP~~iLGVTNpFF~K~L~~wPHilrv~~~~~n~~~~--------------------~~  344 (565)
T KOG2432|consen  287 RPYFTIHDSEFREYTSNV--DSDPLVILGVTNPFFRKALAHWPHILRVGDNQPNMQQQ--------------------QQ  344 (565)
T ss_pred             CceeeeccHHHHHHHhcc--CCCCceEEecCCHHHHHHHhcCcceeeecCCCccccch--------------------hh
Confidence            999999999999999865  56699999999999999999999999999998764331                    11


Q ss_pred             cccccCCcchhhHhhhccCCCcccccccccchhhhcccCCCCChHHHHHHHhcCCCCCccchhhhhchHHHHHHHHHHHH
Q 007016          397 LSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTT  476 (621)
Q Consensus       397 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~k~~~~~~y~~~~~~Dk~~lk~L~~~~~~~~~~e~~~~v~~~lLRRHF~eLT~  476 (621)
                      .+             .+|.....-++++|+|+||+|||+++|||+++|||++|++++|++|    |||++|||||+||||
T Consensus       345 k~-------------~~kl~~~~~~Lns~~gl~t~Ykp~lkkD~slikkll~g~~~krpee----vqs~ilrrhfLElt~  407 (565)
T KOG2432|consen  345 KK-------------AKKLASANTTLNSKAGLYTKYKPYLKKDKSLIKKLLLGMKTKRPEE----VQSAILRRHFLELTQ  407 (565)
T ss_pred             hh-------------hhhhhhhccccCCCccceeccccccCccHHHHHHHHHhcccCChHH----HHHHHHHHHHHHhcc
Confidence            11             1111111127899999999999999999999999999999999999    999999999999999


Q ss_pred             HhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCCCChHHHHHHHHH
Q 007016          477 NFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAA  556 (621)
Q Consensus       477 ~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~spnF~~Wl~~r~~~  556 (621)
                      +||+||+|||+++||++++|||++||.+..|..||||.+||++|+  |||+++||||.||||||+|||||.|||..||+|
T Consensus       408 ~f~~p~~~Y~a~l~pqk~isP~~s~p~~~sF~~defl~~le~~Gp--~lt~r~kgdw~glyrrflrspnf~gwf~~rr~e  485 (565)
T KOG2432|consen  408 SFMIPLERYMASLMPQKDISPFKSPPNLNSFKLDEFLGTLEKAGP--QLTSRLKGDWKGLYRRFLRSPNFRGWFGARRRE  485 (565)
T ss_pred             ceeecchHHHHhhCCccCCCcccCCCcccccCHHHHHHHHhhcCc--cccccccCCcHHHHHHHccCCCCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999996  899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccHHHHhccCCceehhhHHHHHHHHHHHHHH
Q 007016          557 AEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQ  602 (621)
Q Consensus       557 ~~~~~~~l~~~a~~~~d~~~~~~~~~eve~vd~~~~l~~~l~~e~~  602 (621)
                      |+|+|++||++|+|.||+.+|+++|+|||+||||+|||++| +|..
T Consensus       486 ~~q~l~~l~l~al~~~dl~~w~~~~~eve~vd~~lklk~kl-l~~d  530 (565)
T KOG2432|consen  486 LQQTLQDLQLQALSVADLEHWAHDKQEVEIVDMILKLKQKL-LYGD  530 (565)
T ss_pred             HHHHHHHHHHHHHhHHhHHHHHhhcchHHHHHHHHHHHHHH-Hhhh
Confidence            99999999999999999999999999999999999999999 4443

>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth Back     alignment and domain information
>KOG3823 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08616 SPA: Stabilization of polarity axis Back     alignment and domain information
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast Back     alignment and domain information
>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN Back     alignment and domain information
>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha Back     alignment and domain information
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function Back     alignment and domain information
>KOG3569 consensus RAS signaling inhibitor ST5 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4704 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms] Back     alignment and domain information
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only] Back     alignment and domain information
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG2127 consensus Calmodulin-binding protein CRAG, contains DENN domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG2432 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
3tw8_A391 DENN domain-containing protein 1B; longin domain, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 391 Back     alignment and structure
 Score = 53.1 bits (126), Expect = 1e-07
 Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 36/219 (16%)

Query: 141 NRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWP 200
           ++QR        G    L ILS+ P+  V+  LL  +        +  +      +   P
Sbjct: 79  SKQRFGFCRLTSGGTICLCILSYLPWFEVYYKLLNTLADYLAKELENDLNETLRSLYNHP 138

Query: 201 SPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDS 260
            P     + L + +  +    P    LP                            F   
Sbjct: 139 VPKANTPVNLSVHSYFI---APDVTGLP-----------------TIPESRNLTEYFVAV 178

Query: 261 DLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYF 320
           D+          +  L+  +L    I++I+         +    +L+ P+     + P  
Sbjct: 179 DVN--------NMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVL 230

Query: 321 TIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIP 359
             H   +             P ++G+ +    +   K  
Sbjct: 231 PPHLLDYC--------CAPMPYLIGIHSSLIERVKNKSL 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query621
3tw8_A391 DENN domain-containing protein 1B; longin domain, 99.92
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Back     alignment and structure
Probab=99.92  E-value=3.8e-24  Score=230.14  Aligned_cols=242  Identities=16%  Similarity=0.210  Sum_probs=179.3

Q ss_pred             heeEEEEEee--CCCCceeeeeCCCCCCChhhhhhcccccCCCCccccCCCCccceeEEEEEeecCCCCCCCCCCCCccc
Q 007016           26 VVAFCTIRFD--LEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEIT  103 (621)
Q Consensus        26 v~~icvV~FD--le~Gq~vE~~YP~~~ls~~Ek~~Ia~laFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~  103 (621)
                      ..|+|+|.=-  .+.+|.|.+.||++.-.++--+.|...+|||+.....  .......|+|-+.+.              
T Consensus        14 f~~~~~v~~p~~~~~~p~i~~~fP~~~~d~~~l~~ip~FCfP~~~~~~~--~~~~~~~fsFVLTd~--------------   77 (391)
T 3tw8_A           14 FDLVLKVKCHASENEDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERVS--QNQVGQHFTFVLTDI--------------   77 (391)
T ss_dssp             CSEEEEEEC-----CCCEEEEEESTTCCCHHHHHHHHHHHSCSCHHHHG--GGCCSEEEEEEEECT--------------
T ss_pred             EEEEEEEeCCCCCCCCCeeeEeCCCCcccchhhhccccccCCCccccCc--cCCCCceEEEEEecC--------------
Confidence            3456666553  4567999999999764444456799999999975321  122357888887653              


Q ss_pred             ccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEEEeeecCCCccCcceeeEEEEEecCCchhhHHHHHHHhcccccc
Q 007016          104 EINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFD  183 (621)
Q Consensus       104 ~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~kD~sv~RGy~QKSiVIlS~lPy~~lf~~lL~~v~p~yF~  183 (621)
                                                 +....|||+.-    +.     +.||++|||||+||+++|+.+|..+.+.+++
T Consensus        78 ---------------------------dG~r~yg~Cr~----~~-----~~~k~icilS~lp~f~~F~k~L~~l~~~~~~  121 (391)
T 3tw8_A           78 ---------------------------ESKQRFGFCRL----TS-----GGTICLCILSYLPWFEVYYKLLNTLADYLAK  121 (391)
T ss_dssp             ---------------------------TSCEEEEEEEE----CT-----TSSEEEEEEESSCCHHHHHHHHHHHHHHHHT
T ss_pred             ---------------------------CCCEEEEEEEc----cC-----CCceEEEEEeCChHHHHHHHHHHHHHHHHhc
Confidence                                       24678998862    22     3589999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHhccCCCCCCCCceeecccceEEEEeCCCCCCCCCccCCcccccccccCCCCCCCCCCCCccccccchh
Q 007016          184 VGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLF  263 (621)
Q Consensus       184 ~g~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~P~~~~~~~~lf  263 (621)
                      .+...||+++++|.+||-|.||++++++..+. ++  .|....+|                .      .| ...+..+||
T Consensus       122 ~~~~~le~~~~~l~~~P~P~pG~~v~l~~~~~-~~--~P~~~~Lp----------------~------~~-~~~~~~~Lf  175 (391)
T 3tw8_A          122 ELENDLNETLRSLYNHPVPKANTPVNLSVHSY-FI--APDVTGLP----------------T------IP-ESRNLTEYF  175 (391)
T ss_dssp             TCHHHHHHHHHHHHHSCCCCSCC-------------------CCC----------------C------BT-TSHHHHHHH
T ss_pred             CCchHHHHHHHHHhhCCCCCCCCeEEEeccce-ee--CCCCCCCC----------------C------CC-CCCCHHHHH
Confidence            88889999999999999999999988877542 21  23211111                0      01 113344566


Q ss_pred             hhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhccCCCcCCCccccccccCccchhhhccCCCCCCCCeE
Q 007016          264 GTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMV  343 (621)
Q Consensus       264 ~~f~~~l~~L~~LWEllLl~epIlVia~sP~~~S~aV~aL~SLI~PL~y~gd~RPYfTIhD~~F~~~~~~~~~~~~p~~I  343 (621)
                      +++.  +.++..||+++|++++|||++.+++.+|.+|.|+++||.|+.|.+.|+|+++.|..||   .     .+|.|+|
T Consensus       176 ~~L~--~~~il~l~~~~LlE~rIl~~S~~~~~Ls~~~~al~~Ll~Pf~w~~~~IPvLP~~l~d~---l-----~aP~Pfi  245 (391)
T 3tw8_A          176 VAVD--VNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDY---C-----CAPMPYL  245 (391)
T ss_dssp             HHSC--HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTTTSCCCSEEESSCCGGGGGG---G-----GCSSCEE
T ss_pred             HhCC--HHHHHHHHHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhcCcccCcceEeecCHHHHhH---h-----cCCCCEE
Confidence            6663  5999999999999999999999999999999999999999999999999999998776   3     3789999


Q ss_pred             EecchHHHHHhh
Q 007016          344 LGVTNLFFLKAL  355 (621)
Q Consensus       344 lGVTNPfF~k~~  355 (621)
                      +||++.++.+..
T Consensus       246 iGv~~~~~~~~~  257 (391)
T 3tw8_A          246 IGIHSSLIERVK  257 (391)
T ss_dssp             EEEETTTHHHHH
T ss_pred             EEecchhHHHhh
Confidence            999999987654

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00