Citrus Sinensis ID: 007043

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620
MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVKEKNIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSSKESKLEETQEGKKLKADNSLDKENKDGNGNGNGKKLFESFSISVRDVKIPFKHKVADENAHKVANENAKFSNKLKPEDEESSKADPLRGSIFEVRSPGSASHHRKNSSVSFSDDGKTIIPDDLDNLEGTHLDDPDGDRNTRKKKALIRRFGDILLMRRVPHKKDPSME
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccHHHHcccccccHHHHccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHccccccHHHccccccHHHHHHHccccHHHHHHcccccccccHcccccHHHHHHHHHHHHHHHHcccccccccccc
MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVKEKNIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESrdlnasqsglagtnETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSSKESKLEETQegkklkadnsldkenkdgngngngKKLFESFSIsvrdvkipfkhkvadenAHKVANEnakfsnklkpedeesskadplrgsifevrspgsashhrknssvsfsddgktiipddldnlegthlddpdgdrntrKKKALIRRFGDILlmrrvphkkdpsme
mqqymrtvedtlkmtkdrldAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVKEKNIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLEsrdlnasqsglagtneTVEFLNSELQLAKDKLaiseknekesllKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQakekltsteaelevKKAESEELKlklkniedshklqldelkkeaDLYRNTADRLTLEAEesllawneketRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSEssskeskleetqegkklkadnsldkenkdgngngngkKLFESFSISVRDVKIPFKhkvadenahkvanenakfsnklkpedeesskadplrGSIFEvrspgsashhrknssvsfsddgktiipddldnlegthlddpdgdrntrkkkalirrfgdillmrrvphkkdpsme
MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVKEKNIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMslyseskkklqelelevekrkesekkMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQkalddlalalkevaleaSQAKEKLTSTeaelevkkaeseelklklkNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMkelkkllsessskeskleeTQEGKKLKADNSLdkenkdgngngngkkLFESFSISVRDVKIPFKHKVADENAHKVANENAKFSNKLKPEDEESSKADPLRGSIFEVRSPGSASHHRKNSSVSFSDDGKTIIPDDLDNLEGTHLDDPDGDRNTRKKKALIRRFGDILLMRRVPHKKDPSME
***********************************************************************************WEIK*******************************************************************MIVF************************************************************LLKVRSLLEEVRFLKNELKLVTGA*******LDDLALALK*****************************************************LYRNTADRLTLEAEESLLAWNEKETRFVDCI**************************************************************************EALNFICR******************************************************************SFSISVRDVKIPFK*********************************************************************************************LIRRFGDILLM************
********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVKEKNIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAE************MLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELK**********************KADNSLDKENKDGNGNGNGKKLFESFSISVRDVKIPFKHKVADENAHKVANENAKFSNK************PLRGSIFEV*****************SDDGKTIIPDDLDNLEGTHLDDPDGDRNTRKKKALIRRFGDILLMRRVP********
MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVKEKNIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSSKESKLEETQEGKKLKADNSLDKENKDG***GNGKKLFESFSISVRDVKIPFKHKVADENAHKVANENAKFSNKLK*E*****KA****GS*FEV*******************************LEGTHLDDP**DRNTRKKKALIRRFGDILLMR***********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQQYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMSTRKAADIYTMxxxxxxxxxxxxxxxxxxxxxWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLxxxxxxxxxxxxxxxxxxxxxEKKMFDSFAAQTKQLEQTMIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxGxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKESLLKVRSLLEEVRFLKNELKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAEESLLAWNEKETRFVDCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESxxxxxxxxxxxxxxxxxxxxxQEGKKLKADNSLDKENKDGNGNGNGKKLFESFSISVRDVKIPFKHKVADENAHKVANENAKFSNKLKPEDEESSKADPLRGSIFEVRSPGSASHHRKNSSVSFSDDGKTIIPDDLDNLEGTHLDDPDGDRNTRKKKALIRRFGDILLMRRVPHKKDPSME
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query620 2.2.26 [Sep-21-2011]
F4I8B9 1345 Putative WEB family prote no no 0.614 0.283 0.306 7e-22
Q9LFE4853 WEB family protein At5g16 no no 0.632 0.459 0.306 6e-19
F4JJP1 1221 WEB family protein At4g27 no no 0.606 0.307 0.294 7e-15
Q9M8T5806 WEB family protein At3g02 no no 0.546 0.420 0.243 0.0002
>sp|F4I8B9|Y1501_ARATH Putative WEB family protein At1g65010, chloroplastic OS=Arabidopsis thaliana GN=At1g65010 PE=1 SV=1 Back     alignment and function desciption
 Score =  105 bits (263), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 212/395 (53%), Gaps = 14/395 (3%)

Query: 88  LVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQ 147
           L E++  +++LK  L  AK +E+   S   E K K+ ELE EVE+   S+    +S  + 
Sbjct: 281 LKEQEGLVEQLKVDLEAAKMAESCTNSSVEEWKNKVHELEKEVEESNRSKSSASESMESV 340

Query: 148 TKQLEQTMIVFEESKFEINSLREKLKKLE-------------SRDLNASQSGLAGTNETV 194
            KQL +   V  E+K +  + +EK++ LE              R +  ++   +     V
Sbjct: 341 MKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLV 400

Query: 195 EFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLA 254
           E + SEL++++++   +  NEK +   +++LL++   L  EL+     EE ++K ++ L 
Sbjct: 401 ESIKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLT 460

Query: 255 LALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYR 314
           LAL+E + E+S+AK  L   + EL+  +++ + LKL  K   + ++  L++ + E D  +
Sbjct: 461 LALQEASTESSEAKATLLVCQEELKNCESQVDSLKLASKETNEKYEKMLEDARNEIDSLK 520

Query: 315 NTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAK 374
           +T D +  E E S   W +KE   + C+K++EEE   +Q+E   ++  LKE+E    A K
Sbjct: 521 STVDSIQNEFENSKAGWEQKELHLMGCVKKSEEENSSSQEEVSRLVNLLKESEEDACARK 580

Query: 375 EETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEA 434
           EE   L++ LK A  E    +E  G A+AE+ +L+++L  KEE L  +  E   L+  E 
Sbjct: 581 EEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEG 640

Query: 435 ANIESMKELKKLLSESSSKESKLEE-TQEGKKLKA 468
           + +E ++EL K+      KE+KL+  TQE ++LK 
Sbjct: 641 SVLEKIEELSKVKESLVDKETKLQSITQEAEELKG 675

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LFE4|Y5673_ARATH WEB family protein At5g16730, chloroplastic OS=Arabidopsis thaliana GN=At5g16730 PE=1 SV=1 Back     alignment and function description
>sp|F4JJP1|Y4759_ARATH WEB family protein At4g27595, chloroplastic OS=Arabidopsis thaliana GN=At4g27595 PE=2 SV=1 Back     alignment and function description
>sp|Q9M8T5|Y3293_ARATH WEB family protein At3g02930, chloroplastic OS=Arabidopsis thaliana GN=At3g02930 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query620
224081106609 predicted protein [Populus trichocarpa] 0.962 0.980 0.501 1e-140
359480504 1069 PREDICTED: uncharacterized protein LOC10 0.990 0.574 0.467 1e-131
255581724677 conserved hypothetical protein [Ricinus 0.938 0.859 0.492 1e-131
224093722623 predicted protein [Populus trichocarpa] 0.916 0.911 0.488 1e-130
147826737 1301 hypothetical protein VITISV_010023 [Viti 0.956 0.455 0.442 1e-125
297741829 1198 unnamed protein product [Vitis vinifera] 0.7 0.362 0.514 1e-104
356538144618 PREDICTED: uncharacterized protein LOC10 0.953 0.956 0.408 2e-98
357463287569 hypothetical protein MTR_3g086890 [Medic 0.845 0.920 0.422 2e-97
449522458603 PREDICTED: WEB family protein At3g02930, 0.883 0.908 0.405 6e-88
449458381562 PREDICTED: uncharacterized protein LOC10 0.746 0.823 0.432 4e-87
>gi|224081106|ref|XP_002306295.1| predicted protein [Populus trichocarpa] gi|222855744|gb|EEE93291.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 315/628 (50%), Positives = 419/628 (66%), Gaps = 31/628 (4%)

Query: 1   MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIY 60
           MQQ    VE  L+  K RLD AE+ER RA DEL EMK++A E+N RL E MS  K ADI+
Sbjct: 1   MQQDKGQVEGELRNLKQRLDVAERERHRARDELKEMKKVADESNSRLKEAMSNGKVADIF 60

Query: 61  ----TMNETLSK---ELKVKEKNIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAM 113
               ++ E+LSK   ELK+KE  I SLK E   KL E D SL++L   LSN KS+EA  +
Sbjct: 61  VELNSVVESLSKSNQELKIKEMAITSLKAEVG-KLREADNSLEKLNKELSNVKSTEARTL 119

Query: 114 SLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLK 173
            L S SKK++QELE EV+K  E+E K+ DSFAAQTKQLEQT I+ EESK EI SLR++++
Sbjct: 120 DLLSHSKKRIQELEAEVQKGNEAETKLLDSFAAQTKQLEQTKILLEESKLEITSLRKQVE 179

Query: 174 KLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLK 233
           +LE  D +          + +E L SEL L +     S++ EK S  K +SLLEE+  LK
Sbjct: 180 ELEKHDGDK-----VSLQKELESLKSELHLERQNRTHSQEGEKHSASKTKSLLEEMELLK 234

Query: 234 NELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLK 293
            ELKL   AEEN++KA+D LA+AL EVA E++Q +EKL  T+ ELE  K E+E L+  + 
Sbjct: 235 RELKLANEAEENSKKAMDGLAMALTEVATESTQTREKLKLTQEELERFKKEAEILQENIN 294

Query: 294 NIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQ 353
           + ED H+  L+E +KEAD Y+ TA+RL +EAEESLLAWN KET FVDCIKRAEEE+  A 
Sbjct: 295 SFEDKHRTLLNEERKEADRYKKTAERLQIEAEESLLAWNAKETGFVDCIKRAEEEKSYAC 354

Query: 354 QEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALH 413
           +E+  +LE L+ AEN  + AK+E  K+RDILKQA+NEANVAKEA+GIAR EN++L+D L 
Sbjct: 355 EENNKLLELLRTAENMNKIAKQENQKVRDILKQALNEANVAKEAAGIARDENSQLKDVLA 414

Query: 414 AKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSSKESKLEETQEGKKLKADNSLD 473
            K+ AL FI +ENEDL++NEAA +E +KELK+ LSE+S +E K+E+ +   K K  N+ +
Sbjct: 415 EKDNALVFITQENEDLRINEAATLEQIKELKQFLSEASERELKVEDKENQLKEKPQNAEE 474

Query: 474 KENKDGNGNGNGKKLFESFSISVRDVKIPFKHKVADENAHKVANENAKFSNKLKPEDEES 533
           K++KD      GKKL  + S S++++ IP KH+  DEN      +N         EDE+S
Sbjct: 475 KQDKD------GKKLGRTCSFSLKELIIPNKHRDVDENNKTTDKQNN------NDEDEDS 522

Query: 534 SKADPLRGSIF--EVRSPGSASHHRKNSSVSFSDDGKTIIPDDLDNLEGTHLDDPDGDRN 591
              D LRGSIF  +  SP +A   +K     F+D GK   P D D+++G H +DP+ +RN
Sbjct: 523 ENPDLLRGSIFDKQAESPTAAVPRKK----KFTDVGKETKPGDYDHIDGAHTNDPESERN 578

Query: 592 TRKKKALIRRFGDILLMRRVPHKKDPSM 619
           + +K+A IRRFGDILL R   H++  S+
Sbjct: 579 STRKRAYIRRFGDILLRRGGSHRRGQSV 606

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480504|ref|XP_002262746.2| PREDICTED: uncharacterized protein LOC100249503 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255581724|ref|XP_002531664.1| conserved hypothetical protein [Ricinus communis] gi|223528695|gb|EEF30708.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224093722|ref|XP_002309962.1| predicted protein [Populus trichocarpa] gi|222852865|gb|EEE90412.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356538144|ref|XP_003537564.1| PREDICTED: uncharacterized protein LOC100808065 [Glycine max] Back     alignment and taxonomy information
>gi|357463287|ref|XP_003601925.1| hypothetical protein MTR_3g086890 [Medicago truncatula] gi|355490973|gb|AES72176.1| hypothetical protein MTR_3g086890 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449522458|ref|XP_004168243.1| PREDICTED: WEB family protein At3g02930, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449458381|ref|XP_004146926.1| PREDICTED: uncharacterized protein LOC101210943 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query620
TAIR|locus:2140114615 AT4G40020 "AT4G40020" [Arabido 0.459 0.463 0.438 1.2e-71
TAIR|locus:2010826 1345 AT1G65010 [Arabidopsis thalian 0.709 0.327 0.233 4.3e-24
TAIR|locus:2075402806 AT3G02930 "AT3G02930" [Arabido 0.701 0.539 0.216 2.9e-18
TAIR|locus:504955294 1221 AT4G27595 "AT4G27595" [Arabido 0.693 0.352 0.223 2.8e-16
DICTYBASE|DDB_G0270864963 DDB_G0270864 "unknown" [Dictyo 0.622 0.400 0.235 2.1e-08
POMBASE|SPAC1F3.06c 1957 spo15 "sporulation protein Spo 0.672 0.213 0.196 1e-07
TAIR|locus:2061758583 RIP2 "ROP interactive partner 0.587 0.624 0.210 2.1e-07
DICTYBASE|DDB_G0271334 1505 DDB_G0271334 "dilute domain-co 0.664 0.273 0.190 3.4e-07
GENEDB_PFALCIPARUM|PF11_0486 2055 PF11_0486 "MAEBL, putative" [P 0.835 0.252 0.210 6.8e-07
UNIPROTKB|Q8IHP3 2055 PF11_0486 "MAEBL, putative" [P 0.835 0.252 0.210 6.8e-07
TAIR|locus:2140114 AT4G40020 "AT4G40020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 548 (198.0 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
 Identities = 132/301 (43%), Positives = 182/301 (60%)

Query:   140 MFDSFAAQTKQLEQTMIVFEESKFEINSLREKLK-KLESRDLNASQSGLAGTNE-TVEFL 197
             + DSF  Q+++LE+T  + EESK EI SL+EK+     S+D +      +   +  +E L
Sbjct:    67 LLDSFKDQSRELEETKALVEESKVEIASLKEKIDTSYNSQDSSEEDEDDSSVQDFDIESL 126

Query:   198 NSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQXXXXXXXXXX 257
              +E++  K+ LA + +  + S LKV  LLEE++ +KNELK  T AE  N+          
Sbjct:   127 KTEMESTKESLAQAHEAAQASSLKVSELLEEMKSVKNELKSATDAEMTNEKAMDDLALAL 186

Query:   258 XXXXXXXSQAKEKLTSTXXXXXXXXXXXXXXXXXXXNIEDSH-KLQLDELKKEADLYRNT 316
                    SQ KEKL                       IE    K + +E++K+A+L +NT
Sbjct:   187 KEVATDCSQTKEKLVIVETELEAA------------RIESQQWKDKYEEVRKDAELLKNT 234

Query:   317 ADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEE 376
             ++RL +EAEESLLAWN KE+ FV CIKR E+E++    E+  +LE+L  AEN ++ AKEE
Sbjct:   235 SERLRIEAEESLLAWNGKESVFVTCIKRGEDEKNSLLDENNRLLEALVAAENLSKKAKEE 294

Query:   377 TLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEA-A 435
               K+RDILKQAINEANVAKEA+GIARAEN+ L+DAL  KEE L F  +E E +K+NEA A
Sbjct:   295 NHKVRDILKQAINEANVAKEAAGIARAENSNLKDALLDKEEELQFALKEIERVKVNEAVA 354

Query:   436 N 436
             N
Sbjct:   355 N 355
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2010826 AT1G65010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075402 AT3G02930 "AT3G02930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955294 AT4G27595 "AT4G27595" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270864 DDB_G0270864 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC1F3.06c spo15 "sporulation protein Spo15" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2061758 RIP2 "ROP interactive partner 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271334 DDB_G0271334 "dilute domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_V000119
hypothetical protein (609 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query620
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-10
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-09
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-07
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-06
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 4e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-04
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 0.001
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
pfam13166713 pfam13166, AAA_13, AAA domain 0.002
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 0.002
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.003
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information 
 Score = 62.8 bits (153), Expect = 4e-10
 Identities = 95/366 (25%), Positives = 162/366 (44%), Gaps = 27/366 (7%)

Query: 81  KKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKM 140
           +KE E KL     +LD L+  L      E    SL  +++K  +  EL+ E R+     +
Sbjct: 174 RKETERKLERTRENLDRLEDIL---NELERQLKSLERQAEKAERYKELKAELRELELALL 230

Query: 141 FDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSE 200
                   ++LE+     +E++ E+  L  +L++LE   L   +  ++   E +E L  E
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEE-KLEELRLEVSELEEEIEELQKE 289

Query: 201 LQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEV 260
           L    ++++  E+         + L E +  L+ +L+ +    E  +  LD+LA  L E+
Sbjct: 290 LYALANEISRLEQQ-------KQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342

Query: 261 ALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRL 320
             +  + KE+L S EAELE  +AE EEL+ +L+ +E+    QL+ L+ +          L
Sbjct: 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEE----QLETLRSKVAQLELQIASL 398

Query: 321 TLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAE-NTTRAAKEETLK 379
             E E       E        ++R E+ R+  QQE E +L+ L+EAE    +A  EE  +
Sbjct: 399 NNEIER-----LEAR------LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447

Query: 380 LRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIES 439
             + L++ +     A E       E  +  DA   +   L       E L+ N     E 
Sbjct: 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507

Query: 440 MKELKK 445
           +K L K
Sbjct: 508 VKALLK 513

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 620
PF05701522 WEMBL: Weak chloroplast movement under blue light; 99.92
PF05701522 WEMBL: Weak chloroplast movement under blue light; 99.1
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.89
PRK02224880 chromosome segregation protein; Provisional 98.65
PF10174775 Cast: RIM-binding protein of the cytomatrix active 98.6
PRK02224880 chromosome segregation protein; Provisional 98.55
TIGR006061311 rad50 rad50. This family is based on the phylogeno 98.54
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 98.49
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.42
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.28
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 98.22
TIGR006061311 rad50 rad50. This family is based on the phylogeno 98.03
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.01
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.99
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.91
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.81
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.76
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 97.71
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.56
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.55
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 97.55
KOG4673961 consensus Transcription factor TMF, TATA element m 97.28
PRK03918880 chromosome segregation protein; Provisional 97.21
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 97.16
PF00038312 Filament: Intermediate filament protein; InterPro: 97.14
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 96.78
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.67
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 96.54
PRK11637428 AmiB activator; Provisional 96.49
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 96.44
PF00038312 Filament: Intermediate filament protein; InterPro: 96.41
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.39
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 96.03
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 95.92
PRK03918 880 chromosome segregation protein; Provisional 95.86
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 95.59
PRK04778569 septation ring formation regulator EzrA; Provision 95.36
KOG0971 1243 consensus Microtubule-associated protein dynactin 95.07
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.9
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 94.83
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 94.57
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 94.55
PHA02562562 46 endonuclease subunit; Provisional 94.54
PRK11637428 AmiB activator; Provisional 94.49
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 93.94
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 93.66
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 93.5
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 93.36
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 93.07
PRK09039343 hypothetical protein; Validated 92.62
PRK09039343 hypothetical protein; Validated 92.53
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 92.1
PRK04863 1486 mukB cell division protein MukB; Provisional 91.92
KOG0996 1293 consensus Structural maintenance of chromosome pro 91.63
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 91.61
KOG09961293 consensus Structural maintenance of chromosome pro 91.01
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 90.98
PRK04778569 septation ring formation regulator EzrA; Provision 90.69
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 90.57
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 90.54
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.47
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 89.98
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 89.85
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 89.28
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 88.62
KOG0977546 consensus Nuclear envelope protein lamin, intermed 88.33
KOG09331174 consensus Structural maintenance of chromosome pro 88.01
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 87.59
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 87.2
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 87.18
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 86.94
PF14662193 CCDC155: Coiled-coil region of CCDC155 85.71
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 85.45
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 84.84
KOG0977546 consensus Nuclear envelope protein lamin, intermed 84.64
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 84.61
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 84.54
PF14662193 CCDC155: Coiled-coil region of CCDC155 83.76
PF15290305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 83.54
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 83.45
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 81.66
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 81.59
COG5185622 HEC1 Protein involved in chromosome segregation, i 81.58
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 81.38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information 
Probab=99.92  E-value=5.4e-21  Score=208.29  Aligned_cols=280  Identities=32%  Similarity=0.431  Sum_probs=234.5

Q ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhhh----------------
Q 007043            1 MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTMNE----------------   64 (620)
Q Consensus         1 ~q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae~~~e~~----------------   64 (620)
                      .|.+|..+|++|.++++||..++.+|.+|++||..+||++++.+.+|+.+...++.|...++..                
T Consensus        32 ~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~  111 (522)
T PF05701_consen   32 KETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEAS  111 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccch
Confidence            3789999999999999999999999999999999999999999999999999999988655320                


Q ss_pred             -------------------hh---HHHHHHH--------------H---------------------HhhHHhhH-----
Q 007043           65 -------------------TL---SKELKVK--------------E---------------------KNIESLKK-----   82 (620)
Q Consensus        65 -------------------~l---~~EL~i~--------------e---------------------~~i~~LK~-----   82 (620)
                                         .|   .+||...              .                     .+|..||+     
T Consensus       112 ~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~  191 (522)
T PF05701_consen  112 VAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA  191 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               01   1444200              0                     13555554     


Q ss_pred             -----------------------HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH-------
Q 007043           83 -----------------------EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEK-------  132 (620)
Q Consensus        83 -----------------------~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~-------  132 (620)
                                             .|+..|.+.+..|+.|+.++..++..+++....    ..-+..|..+|..       
T Consensus       192 ~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a----~~~l~~Lq~El~~~~~~~l~  267 (522)
T PF05701_consen  192 KLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEA----SAELESLQAELEAAKESKLE  267 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence                                   378889999999999999999999888855432    2333333333333       


Q ss_pred             ----hhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHH
Q 007043          133 ----RKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKL  208 (620)
Q Consensus       133 ----a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~  208 (620)
                          .+.....+..+|.+++++|++++..|+.++.++.+|+..|                      ++|+++|..++.+.
T Consensus       268 ~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~v----------------------esL~~ELe~~K~el  325 (522)
T PF05701_consen  268 EEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASV----------------------ESLRSELEKEKEEL  325 (522)
T ss_pred             hhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHH
Confidence                3445555667799999999999999999999999888865                      55667778888888


Q ss_pred             HhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHH
Q 007043          209 AISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEEL  288 (620)
Q Consensus       209 ~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~L  288 (620)
                      ....+++..+.+.|+.|..++++++.+|..++.++.+.+.+|++|..+|+.++.|+.++|......+.|+..++.+++..
T Consensus       326 ~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~  405 (522)
T PF05701_consen  326 ERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQT  405 (522)
T ss_pred             HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHh
Q 007043          289 KLKLKNIEDSHKLQLDEL  306 (620)
Q Consensus       289 k~~Lk~teekye~mLDEa  306 (620)
                      +..++.++.+|+.++.++
T Consensus       406 ka~i~t~E~rL~aa~ke~  423 (522)
T PF05701_consen  406 KAAIKTAEERLEAALKEA  423 (522)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999874

Several sequences in this family are described as being myosin heavy chain-like.
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query620
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-06
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 1e-04
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 4e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 3e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 6e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 81.4 bits (200), Expect = 4e-16
 Identities = 99/611 (16%), Positives = 186/611 (30%), Gaps = 174/611 (28%)

Query: 60  YTMNETLSKELKVKEKNIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSES 119
           +   E   +   +     ++    ++ K V+     D  K  LS                
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-----DMPKSILS---------------- 47

Query: 120 KKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINS--LREKLKKLES 177
           K+++  + +  +       ++F +    +KQ E+ +  F E    IN   L   +K  E 
Sbjct: 48  KEEIDHI-IMSKDAVSGTLRLFWTL--LSKQ-EEMVQKFVEEVLRINYKFLMSPIKT-EQ 102

Query: 178 RDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKN--EKESLLKVRSLLEEVRFLKNE 235
           R           +  T  ++    +L  D    ++ N    +  LK+R  L E   L+  
Sbjct: 103 RQ---------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---LRPA 150

Query: 236 LKLV------TGAEENNQKALDDLALALKEV-ALEASQAKEKLTSTEAE---LEVKKAES 285
             ++      +G                K   AL+   + +     + +   L +K   S
Sbjct: 151 KNVLIDGVLGSG----------------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 286 EELKLK-LKN----IEDSHKLQLD---ELKKEADLYRNTADRLTLEA--EESLL----AW 331
            E  L+ L+     I+ +   + D    +K      +    RL      E  LL      
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 332 NEKETR-F-VDC----IKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKL-RDIL 384
           N K    F + C      R ++  D         +     +   T    +E   L    L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT---PDEVKSLLLKYL 311

Query: 385 KQAINEANVAKEA--------SGIARAENARLQDALHAKEEALNFICRENEDLKMNEAAN 436
                +  + +E         S IA      ++D           +              
Sbjct: 312 DCRPQD--LPREVLTTNPRRLSIIA----ESIRD----------GLAT------------ 343

Query: 437 IESMKELKKLLSESSSKESKLEETQEGKKLKADNSLDKENKDGNGNGNGKKLFESFSISV 496
                  K +  +      KL    E       +SL+            +K+F+  S+  
Sbjct: 344 ---WDNWKHVNCD------KLTTIIE-------SSLNVLEPA-----EYRKMFDRLSVFP 382

Query: 497 RDVKIPFK------HKVADENAHKVANENAKFSNKLKPEDEESSKADPLRGSIFEVRSPG 550
               IP          V   +   V N+  K+S  ++ + +ES+ + P      +V+   
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLEN 441

Query: 551 SASHHRK-----NSSVSFSDDGKTIIPDDLDN-----LEGTHLDDPDGDRNTRKKKALIR 600
             + HR      N   +F  D   +IP  LD      + G HL + +      ++  L R
Sbjct: 442 EYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHI-GHHLKNIEHP----ERMTLFR 494

Query: 601 R-FGDILLMRR 610
             F D   + +
Sbjct: 495 MVFLDFRFLEQ 505
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query620
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.25
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.97
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.63
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.49
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 95.56
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 95.35
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 93.9
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.1
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 92.01
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 91.74
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 88.77
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 87.3
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 84.0
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 80.82
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 80.54
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=98.25  E-value=0.0028  Score=58.28  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHhhhHHhHHHHH
Q 007043           12 LKMTKDRLDAAEKERDRALDELHE   35 (620)
Q Consensus        12 Lkkakeql~~~e~Ek~r~~dEL~e   35 (620)
                      +...+..+..+......+-.+|..
T Consensus         8 ~~~l~~~~~~~~~~~~~l~~~l~~   31 (284)
T 1c1g_A            8 MQMLKLDKENALDRADEAEADKKA   31 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00