Citrus Sinensis ID: 007080

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MKFMKLGSKPDSFQADGNNVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSGFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRIGQQLEEASVNDILIRAPEGESTMYDVDMVHKIIEEFLMQDKNAETDVPEEHEVVEIRRPGVLSDASKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLSVDACMHAVQNERLPLRVVVQVLFFEQVRVAAASGSSTPDLPRGLKDLNNGSRRSSRSAATNPEEDWDAVATAEELKALKGELAALRLSNGVGGSERNGSDKAAITKMKGLLKSKKIFAKLFTSKGGQGENSGSDSSESVGSAVLEETKSTPSRNRRNSVS
cccccccccccccccccccEEEEcccccccEEEEEccEEEEEEccccccccHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccEEEcccccccccccccccccccccccccccccHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccc
cccEEcccccccHEcccccEEEEEccccccEEEEEccEEEEEccccccccHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccEccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccEccHHHHHHHHHHHHHHHccccccccccccHcccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHcccccccccccccc
mkfmklgskpdsfqadgnnVRYVASELATDVIVVVDDIkfhlhkfpllskSACLQKLVATAneannnevdisdipggpsafETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACvdvskvdwsytynrkklpeengndpnwngvrtravpkdwwveDLCELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSgfskgmiqsgnvgkyRSIVDAVVWLlpaekgsvSCSFLLKLLKAAIIVDSGDMVKAQLVRRIGQQLeeasvndilirapegestmydVDMVHKIIEEFLMQdknaetdvpeehevveirrpgvlsdASKLMVAKLMDGYLTEIakdhnlpvakfVDLAKLvsgisrpthdgLYRAIDMYLMEHQAISKSERKKICklmdcrklsVDACMHAVQNERLPLRVVVQVLFFEQVRVAaasgsstpdlprglkdlnngsrrssrsaatnpeedwDAVATAEELKALKGELAALRLsngvggserngsdKAAITKMKGLLKSKKIFAKLFtskggqgensgsdssesvGSAVLeetkstpsrnrrnsvs
mkfmklgskpdsfqadgNNVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIAtkacvdvskvDWSYTYnrkklpeengndpnwngVRTRAVPKDWWVEDLCELEIDFYKRCIMTIktkailsnevIGEALKAYAYRRLSGFSKgmiqsgnvgKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRIgqqleeasvndilirapegestmYDVDMVHKIIEEFLMQDKNAEtdvpeehevveirrpgvlsdasKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLSVDACMHAVQNERLPLRVVVQVLFFEQVRVAaasgsstpdlprglkdlnngsrrssrsaatnpeedwDAVATAEELKALKGELAALRlsngvggserngsdkAAITKMKGLLKSKKIFAKLFTskggqgensgsdssesvgsavleetkstpsrnrrnsvs
MKFMKLGSKPDSFQADGNNVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATaneannneVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSGFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRIGQQLEEASVNDILIRAPEGESTMYDVDMVHKIIEEFLMQDKNAETDVPEEHEVVEIRRPGVLSDASKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLSVDACMHAVQNERLPLRVVVQVLFFEQVRVAAASGSSTPDLPRGLKDLNNGsrrssrsAATNPEEDWDAVataeelkalkgelaalrlSNGVGGSERNGSDKAAITKMKGLLKSKKIFAKLFTSKggqgensgsdssesvgsAVLEETKSTPSRNRRNSVS
******************NVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDWSYTYNRKKL*******PNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSGFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRIGQQLEEASVNDILIRAPEGESTMYDVDMVHKIIEEFLMQ*************VVEIRRPGVLSDASKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLSVDACMHAVQNERLPLRVVVQVLFFEQVRVA************************************************************************************KIFAKL****************************************
**F***GSKPDSFQADGNNVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQ****************SDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACV************************************DWWVEDLCELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSGFSK******NVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRIGQQLEEASVNDILIRAPEGESTMYDVDMVHKIIEEFLM*****************************LMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEH******ERKKICKLMDCRKLSVDACMHAVQNERLPLRVVVQVLFFEQ**************************************************************************************************************************************
********KPDSFQADGNNVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSGFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRIGQQLEEASVNDILIRAPEGESTMYDVDMVHKIIEEFLMQDKNAETDVPEEHEVVEIRRPGVLSDASKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLSVDACMHAVQNERLPLRVVVQVLFFEQVRVAAASGSSTPDLPRGLKDLNN****************WDAVATAEELKALKGELAALRLSNGVGGSERNGSDKAAITKMKGLLKSKKIFAKLFTS*************************************
******GSKPDSFQADGNNVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDWSYTYN*********************VPKDWWVEDLCELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSGFSKGM*QSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRIGQQLEEASVNDILIRAPEGESTMYDVDMVHKIIEEFLMQDKN*********************DASKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLSVDACMHAVQNERLPLRVVVQVLFFEQVRVAAASG******************************************************************************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKFMKLGSKPDSFQADGNNVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSGFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRIGQQLEEASVNDILIRAPEGESTMYDVDMVHKIIEEFLMQDKNAETDVPEEHEVVEIRRPGVLSDASKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLSVDACMHAVQNERLPLRVVVQVLFFEQVRVAAASGSSTPDLPRGLKDLNNGSRRSSRSAATNPEEDWDAVATAEELKALKGELAALRLSNGVGGSERNGSDKAAITKMKGLLKSKKIFAKLFTSKGGQGENSGSDSSESVGSAVLEETKSTPSRNRRNSVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query619 2.2.26 [Sep-21-2011]
O80970634 BTB/POZ domain-containing yes no 0.928 0.906 0.659 0.0
Q0WL52580 BTB/POZ domain-containing no no 0.857 0.915 0.513 1e-167
Q9FN09579 BTB/POZ domain-containing no no 0.880 0.941 0.528 1e-166
O64814481 BTB/POZ domain-containing no no 0.726 0.935 0.551 1e-148
Q8H1D3571 BTB/POZ domain-containing no no 0.764 0.828 0.479 1e-132
Q9C9V6631 BTB/POZ domain-containing no no 0.915 0.898 0.425 1e-127
Q9LIM6588 BTB/POZ domain-containing no no 0.773 0.814 0.407 1e-101
Q9FIK1559 BTB/POZ domain-containing no no 0.743 0.822 0.386 1e-101
Q9S9Q9665 BTB/POZ domain-containing no no 0.780 0.726 0.375 3e-95
Q5KS50762 Coleoptile phototropism p no no 0.830 0.674 0.336 4e-95
>sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1 Back     alignment and function desciption
 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/584 (65%), Positives = 484/584 (82%), Gaps = 9/584 (1%)

Query: 1   MKFMKLGSKPDSFQADGNNVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVAT 60
           MKFMK+GSK DSF+ DGNNVRYV +ELA+D+ V V+  +F LHKFPLLSK ACLQKL+++
Sbjct: 1   MKFMKIGSKLDSFKTDGNNVRYVENELASDISVDVEGSRFCLHKFPLLSKCACLQKLLSS 60

Query: 61  ANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGN 120
            ++ N +++DIS IPGGP+AFETCAKFCYGMTVTL+AYNVVA RCAAEYLGMHE+VEKGN
Sbjct: 61  TDKNNIDDIDISGIPGGPTAFETCAKFCYGMTVTLSAYNVVATRCAAEYLGMHETVEKGN 120

Query: 121 FVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDW 180
            +YKIDVF+SSS+ RSWKDSIIVLQTTK  LP+SE+LK+ S CI+AIATKACVDVS V+W
Sbjct: 121 LIYKIDVFLSSSLFRSWKDSIIVLQTTKPFLPLSEDLKLVSLCIDAIATKACVDVSHVEW 180

Query: 181 SYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAILSNE 240
           SYTYN+KKL EEN      + ++ R VP DWWVEDLCELEID+YKR IM IKTK IL  E
Sbjct: 181 SYTYNKKKLAEENNGA---DSIKARDVPHDWWVEDLCELEIDYYKRVIMNIKTKCILGGE 237

Query: 241 VIGEALKAYAYRRLSGFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAA 300
           VIGEALKAY YRRLSGF+KG+++ G++ K+++I++ +VWLLPAEK SVSC FLLKLLKA 
Sbjct: 238 VIGEALKAYGYRRLSGFNKGVMEQGDLVKHKTIIETLVWLLPAEKNSVSCGFLLKLLKAV 297

Query: 301 IIVDSGDMVKAQLVRRIGQQLEEASVNDILIRAPEGESTMYDVDMVHKIIEEFLMQDKNA 360
            +V+SG++VK QLVRRIGQQLEEAS+ ++LI++ +G  T+YDVD+V KI+ EF+ +DKN+
Sbjct: 298 TMVNSGEVVKEQLVRRIGQQLEEASMAELLIKSHQGSETLYDVDLVQKIVMEFMRRDKNS 357

Query: 361 ETDVPEEH---EVVEIRR-PGVLSDASKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLV 416
           E +V ++    EV E+R+ PG+LS+ASKLMVAK++D YLTEIAKD NLP +KF+D+A+ V
Sbjct: 358 EIEVQDDEDGFEVQEVRKLPGILSEASKLMVAKVIDSYLTEIAKDPNLPASKFIDVAESV 417

Query: 417 SGISRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLSVDACMHAVQNERLPLRV 476
           + I RP HD LYRAIDM+L EH  I+K E+K++CKLMDCRKLSV+ACMHAVQN+RLPLRV
Sbjct: 418 TSIPRPAHDALYRAIDMFLKEHPGITKGEKKRMCKLMDCRKLSVEACMHAVQNDRLPLRV 477

Query: 477 VVQVLFFEQVRVAAASGSSTPDLPRGL-KDLNN-GSRRSSRSAATNPEEDWDAVATAEEL 534
           VVQVLFFEQVR AA+SGSSTPDLPRG+ ++L + G+  SSRS  T  E++W+AVAT EE+
Sbjct: 478 VVQVLFFEQVRAAASSGSSTPDLPRGMGRELRSCGTYGSSRSVPTVMEDEWEAVATEEEM 537

Query: 535 KALKGELAALRLSNGVGGSERNGSDKAAITKMKGLLKSKKIFAK 578
           +ALK E+AAL+L    G    + +   AI+K++ L+ SKKIF K
Sbjct: 538 RALKSEIAALKLQEESGRKSMDRAGVTAISKIRSLIMSKKIFGK 581
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). May play an essential role in auxin-mediated organogenesis and in root gravitropic responses.
Arabidopsis thaliana (taxid: 3702)
>sp|Q0WL52|NPY5_ARATH BTB/POZ domain-containing protein NPY5 OS=Arabidopsis thaliana GN=NPY5 PE=2 SV=2 Back     alignment and function description
>sp|Q9FN09|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1 Back     alignment and function description
>sp|O64814|NPY4_ARATH BTB/POZ domain-containing protein NPY4 OS=Arabidopsis thaliana GN=NPY4 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1D3|NPY1_ARATH BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9V6|Y1790_ARATH BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1 Back     alignment and function description
>sp|Q9LIM6|Y3649_ARATH BTB/POZ domain-containing protein At3g26490 OS=Arabidopsis thaliana GN=At3g26490 PE=1 SV=1 Back     alignment and function description
>sp|Q9FIK1|Y5780_ARATH BTB/POZ domain-containing protein At5g47800 OS=Arabidopsis thaliana GN=At5g47800 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query619
225428969626 PREDICTED: BTB/POZ domain-containing pro 1.0 0.988 0.777 0.0
224105707613 predicted protein [Populus trichocarpa] 0.990 1.0 0.768 0.0
255573143621 signal transducer, putative [Ricinus com 0.995 0.991 0.758 0.0
147819220621 hypothetical protein VITISV_035422 [Viti 0.966 0.962 0.771 0.0
449469118626 PREDICTED: BTB/POZ domain-containing pro 1.0 0.988 0.733 0.0
449484326626 PREDICTED: LOW QUALITY PROTEIN: BTB/POZ 1.0 0.988 0.731 0.0
356536111624 PREDICTED: BTB/POZ domain-containing pro 1.0 0.991 0.733 0.0
356575724623 PREDICTED: BTB/POZ domain-containing pro 0.998 0.991 0.732 0.0
357444403625 BTB/POZ domain-containing protein [Medic 1.0 0.990 0.72 0.0
225438984629 PREDICTED: BTB/POZ domain-containing pro 0.993 0.977 0.699 0.0
>gi|225428969|ref|XP_002264153.1| PREDICTED: BTB/POZ domain-containing protein NPY2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/626 (77%), Positives = 547/626 (87%), Gaps = 7/626 (1%)

Query: 1   MKFMKLGSKPDSFQADGNNVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVAT 60
           MKFMKLGSKPDSFQ DGN+VRYVASELATD++V V ++KF+LHKFPLLSKS CLQKLVA 
Sbjct: 1   MKFMKLGSKPDSFQTDGNSVRYVASELATDIVVNVGEVKFYLHKFPLLSKSECLQKLVAA 60

Query: 61  ANEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGN 120
            N+ N++EV I DIPGGPSAFE CAKFCYGMTVTLNAYNVVAARCAAEYLGMHE++EKGN
Sbjct: 61  TNDGNSDEVHIPDIPGGPSAFEICAKFCYGMTVTLNAYNVVAARCAAEYLGMHETIEKGN 120

Query: 121 FVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDW 180
            +YKIDVF++SSI RSWKDSIIVLQTTKSLLP+SE+LKV SHCI++IA+KA +DVS+VDW
Sbjct: 121 LIYKIDVFLNSSIFRSWKDSIIVLQTTKSLLPLSEDLKVISHCIDSIASKASIDVSRVDW 180

Query: 181 SYTYNRKKLPEENGNDPNWNGVRTR-AVPKDWWVEDLCELEIDFYKRCIMTIKTKAILSN 239
           SYTYNRKKLPEENG DP WNGV  R  VPKDWWVEDLCELEID YKR IM+IKT+A++S+
Sbjct: 181 SYTYNRKKLPEENGTDPKWNGVGNRPVVPKDWWVEDLCELEIDLYKRVIMSIKTQAVISH 240

Query: 240 EVIGEALKAYAYRRLSGFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKA 299
           EVIGEALKA+A +RL GFSKGMI +G+  K+RS VD +VWLLPA+K SVSCSFLLKLLKA
Sbjct: 241 EVIGEALKAFALKRLPGFSKGMIPNGDTAKFRSTVDTIVWLLPADKCSVSCSFLLKLLKA 300

Query: 300 AIIVDSGDMVKAQLVRRIGQQLEEASVNDILIRAPEGESTMYDVDMVHKIIEEFLMQDKN 359
           AI +DSG+  K +LVRRIGQQLEEASVND+LIRAPEGE+  YDVD V +I+EEFLMQ++N
Sbjct: 301 AIFMDSGERAKRELVRRIGQQLEEASVNDLLIRAPEGETARYDVDTVQQIVEEFLMQEQN 360

Query: 360 AETDVPEEHEVVEIRRPGVLSDASKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGI 419
           AE +    HE+ E+RRPG+LSDASKLMVAKL+DGYL EIAKD NLP++KFVDLA+LVSG 
Sbjct: 361 AEIESTAAHELQEVRRPGILSDASKLMVAKLVDGYLAEIAKDPNLPLSKFVDLAELVSGF 420

Query: 420 SRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLSVDACMHAVQNERLPLRVVVQ 479
           SRP HDGLYRAIDMYL EH  ISKSERK+IC+LMDC+KLSVDACMHAVQNERLPLRVVVQ
Sbjct: 421 SRPAHDGLYRAIDMYLKEHPGISKSERKRICRLMDCKKLSVDACMHAVQNERLPLRVVVQ 480

Query: 480 VLFFEQVRVAAASGSSTPDLPRGLKDLNNGSRRSSRSAATNPEEDWDAVATAEELKALKG 539
           VLFFEQVR  A SGSSTPDLP+G+KDLN+ S  SSRS  TN EEDWDAVAT EELKALKG
Sbjct: 481 VLFFEQVRATATSGSSTPDLPKGIKDLNSASHGSSRSVTTNTEEDWDAVATLEELKALKG 540

Query: 540 ELAALRLSNGVGGSERNGS------DKAAITKMKGLLKSKKIFAKLFTSKGGQGENSGSD 593
           ELA+LRL NGVG SERNG       DKAAI KMKGLL SKKIF KL++SK GQGENSGSD
Sbjct: 541 ELASLRLGNGVGASERNGGDSKGSIDKAAINKMKGLLMSKKIFTKLWSSKSGQGENSGSD 600

Query: 594 SSESVGSAVLEETKSTPSRNRRNSVS 619
           SS S GSA  EE KSTPSRNRR+SVS
Sbjct: 601 SSGSSGSANPEEAKSTPSRNRRHSVS 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224105707|ref|XP_002313906.1| predicted protein [Populus trichocarpa] gi|222850314|gb|EEE87861.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255573143|ref|XP_002527501.1| signal transducer, putative [Ricinus communis] gi|223533141|gb|EEF34899.1| signal transducer, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147819220|emb|CAN66911.1| hypothetical protein VITISV_035422 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449469118|ref|XP_004152268.1| PREDICTED: BTB/POZ domain-containing protein NPY2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449484326|ref|XP_004156852.1| PREDICTED: LOW QUALITY PROTEIN: BTB/POZ domain-containing protein NPY2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356536111|ref|XP_003536583.1| PREDICTED: BTB/POZ domain-containing protein NPY2-like [Glycine max] Back     alignment and taxonomy information
>gi|356575724|ref|XP_003555987.1| PREDICTED: BTB/POZ domain-containing protein NPY2-like [Glycine max] Back     alignment and taxonomy information
>gi|357444403|ref|XP_003592479.1| BTB/POZ domain-containing protein [Medicago truncatula] gi|355481527|gb|AES62730.1| BTB/POZ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225438984|ref|XP_002284345.1| PREDICTED: BTB/POZ domain-containing protein NPY2-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query619
TAIR|locus:2046961634 NPY2 "NAKED PINS IN YUC MUTANT 0.995 0.971 0.602 7.8e-197
TAIR|locus:2158182579 NPY3 "NAKED PINS IN YUC MUTANT 0.770 0.823 0.572 4.6e-150
TAIR|locus:2120125580 NPY5 "NAKED PINS IN YUC MUTANT 0.537 0.574 0.564 7e-143
TAIR|locus:2045314481 NPY4 "NAKED PINS IN YUC MUTANT 0.515 0.663 0.559 4.8e-131
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.363 0.301 0.446 5e-99
TAIR|locus:2079296588 AT3G26490 [Arabidopsis thalian 0.555 0.585 0.400 3e-95
TAIR|locus:2116752571 ENP "ENHANCER OF PINOID" [Arab 0.607 0.658 0.464 7.9e-93
TAIR|locus:2160877559 AT5G47800 [Arabidopsis thalian 0.777 0.860 0.384 4e-90
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.815 0.853 0.371 2.9e-87
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.413 0.384 0.369 3.1e-87
TAIR|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1906 (676.0 bits), Expect = 7.8e-197, P = 7.8e-197
 Identities = 384/637 (60%), Positives = 475/637 (74%)

Query:     1 MKFMKLGSKPDSFQADGNNVRYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVAT 60
             MKFMK+GSK DSF+ DGNNVRYV +ELA+D+ V V+  +F LHKFPLLSK ACLQKL+++
Sbjct:     1 MKFMKIGSKLDSFKTDGNNVRYVENELASDISVDVEGSRFCLHKFPLLSKCACLQKLLSS 60

Query:    61 XXXXXXXXVDISDIPGGPSAFETCAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEKGN 120
                     +DIS IPGGP+AFETCAKFCYGMTVTL+AYNVVA RCAAEYLGMHE+VEKGN
Sbjct:    61 TDKNNIDDIDISGIPGGPTAFETCAKFCYGMTVTLSAYNVVATRCAAEYLGMHETVEKGN 120

Query:   121 FVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSKVDW 180
              +YKIDVF+SSS+ RSWKDSIIVLQTTK  LP+SE+LK+ S CI+AIATKACVDVS V+W
Sbjct:   121 LIYKIDVFLSSSLFRSWKDSIIVLQTTKPFLPLSEDLKLVSLCIDAIATKACVDVSHVEW 180

Query:   181 SYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAILSNE 240
             SYTYN+KKL EEN      + ++ R VP DWWVEDLCELEID+YKR IM IKTK IL  E
Sbjct:   181 SYTYNKKKLAEENNGA---DSIKARDVPHDWWVEDLCELEIDYYKRVIMNIKTKCILGGE 237

Query:   241 VIGEALKAYAYRRLSGFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAA 300
             VIGEALKAY YRRLSGF+KG+++ G++ K+++I++ +VWLLPAEK SVSC FLLKLLKA 
Sbjct:   238 VIGEALKAYGYRRLSGFNKGVMEQGDLVKHKTIIETLVWLLPAEKNSVSCGFLLKLLKAV 297

Query:   301 IIVDSGDMVKAQLVRRIGQQLEEASVNDILIRAPEGESTMYDVDMVHKIIEEFLMQDKNA 360
              +V+SG++VK QLVRRIGQQLEEAS+ ++LI++ +G  T+YDVD+V KI+ EF+ +DKN+
Sbjct:   298 TMVNSGEVVKEQLVRRIGQQLEEASMAELLIKSHQGSETLYDVDLVQKIVMEFMRRDKNS 357

Query:   361 ETDVPEEH---EVVEIRR-PGVLSDASKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLV 416
             E +V ++    EV E+R+ PG+LS+ASKLMVAK++D YLTEIAKD NLP +KF+D+A+ V
Sbjct:   358 EIEVQDDEDGFEVQEVRKLPGILSEASKLMVAKVIDSYLTEIAKDPNLPASKFIDVAESV 417

Query:   417 SGISRPTHDGLYRAIDMYLMEHQAISKSERKKICKLMDCRKLSVDACMHAVQNERLPLRV 476
             + I RP HD LYRAIDM+L EH  I+K E+K++CKLMDCRKLSV+ACMHAVQN+RLPLRV
Sbjct:   418 TSIPRPAHDALYRAIDMFLKEHPGITKGEKKRMCKLMDCRKLSVEACMHAVQNDRLPLRV 477

Query:   477 VVQVLFFEQVRVAAASGSSTPDLPRGL-KDLNN-GXXXXXXXAATNPEEDWDAVXXXXXX 534
             VVQVLFFEQVR AA+SGSSTPDLPRG+ ++L + G         T  E++W+AV      
Sbjct:   478 VVQVLFFEQVRAAASSGSSTPDLPRGMGRELRSCGTYGSSRSVPTVMEDEWEAVATEEEM 537

Query:   535 XXXXXXXXXXXXSNGVGGSERNGSDKAAITKMKGLLKSKKIFAKL--FTSKXXXXXXXXX 592
                             G    + +   AI+K++ L+ SKKIF K     SK         
Sbjct:   538 RALKSEIAALKLQEESGRKSMDRAGVTAISKIRSLIMSKKIFGKKVQLQSKGGGEKNNGG 597

Query:   593 XXXXXXXXAVL------EETK--STPSRN--RRNSVS 619
                       L      EET   +TPSRN  RR SVS
Sbjct:   598 GGGGSDSSESLGSMNAAEETAKTATPSRNLTRRVSVS 634
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
GO:0009958 "positive gravitropism" evidence=IGI
GO:0071944 "cell periphery" evidence=IDA
TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120125 NPY5 "NAKED PINS IN YUC MUTANTS 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045314 NPY4 "NAKED PINS IN YUC MUTANTS 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079296 AT3G26490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116752 ENP "ENHANCER OF PINOID" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160877 AT5G47800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80970NPY2_ARATHNo assigned EC number0.65920.92890.9069yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00001452001
SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (626 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query619
pfam03000249 pfam03000, NPH3, NPH3 family 1e-115
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 1e-04
pfam00651101 pfam00651, BTB, BTB/POZ domain 6e-04
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  343 bits (881), Expect = e-115
 Identities = 124/257 (48%), Positives = 178/257 (69%), Gaps = 10/257 (3%)

Query: 209 KDWWVEDLCELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSGFSKGMIQSG-NV 267
           +DWW EDL EL ID +KR I  +K++ +   EVIGEAL  YA + L G S+       + 
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRGV-KPEVIGEALMHYAKKWLPGLSRSGSSEEDSE 59

Query: 268 GKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRIGQQLEEASVN 327
            + R++++ +V LLP+EKGSVSCSFL KLL+AAII+ + +  + +L RRIG QL++A+++
Sbjct: 60  EEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERRIGLQLDQATLD 119

Query: 328 DILIRA-PEGESTMYDVDMVHKIIEEFLMQDKNAETDVPEEHEVVEIRRPGVLSDASKLM 386
           D+LI +   GE T+YDVD+V +I+E FL +D   ++   E+ E          S +S L 
Sbjct: 120 DLLIPSGYSGEETLYDVDLVQRILEVFLSRDAATQSSDDEDSE-------ASPSSSSLLK 172

Query: 387 VAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQAISKSER 446
           VAKL+DGYL EIA D NL ++KF+ LA+ V   +RP+HDGLYRAID+YL  H  +S+SE+
Sbjct: 173 VAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPNLSESEK 232

Query: 447 KKICKLMDCRKLSVDAC 463
           K++C+LMDC+KLS +AC
Sbjct: 233 KRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 619
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.95
PHA02713557 hypothetical protein; Provisional 99.94
PHA02790480 Kelch-like protein; Provisional 99.92
PHA03098534 kelch-like protein; Provisional 99.9
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.66
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.56
KOG4350620 consensus Uncharacterized conserved protein, conta 99.19
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.11
KOG4591280 consensus Uncharacterized conserved protein, conta 98.89
KOG4682488 consensus Uncharacterized conserved protein, conta 98.39
KOG07831267 consensus Uncharacterized conserved protein, conta 98.09
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.02
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.57
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.8
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.11
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.71
KOG3473112 consensus RNA polymerase II transcription elongati 95.31
KOG2838401 consensus Uncharacterized conserved protein, conta 94.66
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.09
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 92.51
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 92.44
KOG2838401 consensus Uncharacterized conserved protein, conta 87.94
KOG3840438 consensus Uncharaterized conserved protein, contai 80.35
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=7.8e-87  Score=678.49  Aligned_cols=249  Identities=50%  Similarity=0.869  Sum_probs=224.2

Q ss_pred             CCchhhhccccChhHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCCcccc--------ccCCchhhhhhHHHHHHHh
Q 007080          209 KDWWVEDLCELEIDFYKRCIMTIKTKAILSNEVIGEALKAYAYRRLSGFSKGM--------IQSGNVGKYRSIVDAVVWL  280 (619)
Q Consensus       209 ~dWW~EDL~~L~idl~~rVI~am~s~g~~~~e~I~~aL~~Ya~~~L~~~~~~~--------~~~~~~~~~r~LLEtIV~L  280 (619)
                      +|||||||+.|++++|+|||.+|+++|+ ++++|+++|++||++|+|+..+..        .......++|.+||+||+|
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~-~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~l   79 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGM-KPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSL   79 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHh
Confidence            4899999999999999999999999987 899999999999999999994321        1112357899999999999


Q ss_pred             cCCCCCCcchHHHHHHHHHhhhhcCCHHHHHHHHHHHHhccccccccceeccC-CCCCCccccHHHHHHHHHHHHhccCC
Q 007080          281 LPAEKGSVSCSFLLKLLKAAIIVDSGDMVKAQLVRRIGQQLEEASVNDILIRA-PEGESTMYDVDMVHKIIEEFLMQDKN  359 (619)
Q Consensus       281 LP~ek~svsc~FLf~LLR~A~~L~as~~Cr~~LEkrIg~qLd~AtldDLLIPs-~~~~~t~YDVd~V~riv~~Fl~~~~~  359 (619)
                      ||.+|+++||+|||+|||+|++++++..||.+||+|||.|||||||+|||||+ ++..+|+||||+|+|||++||.+.+.
T Consensus        80 LP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~  159 (258)
T PF03000_consen   80 LPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEE  159 (258)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999 44447999999999999999998654


Q ss_pred             CCCCCCcchhhHhhcCCCCCCchHHHHHHHHHHhhhhhhcCCCCCChhhHHHHHHhhcCCCCCCcchHHHHHHHHHHhcc
Q 007080          360 AETDVPEEHEVVEIRRPGVLSDASKLMVAKLMDGYLTEIAKDHNLPVAKFVDLAKLVSGISRPTHDGLYRAIDMYLMEHQ  439 (619)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~nL~~skF~~Lae~lP~~aR~~hDgLYRAIDiYLK~Hp  439 (619)
                      ..     ..+..+.......+..++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||
T Consensus       160 ~~-----~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp  234 (258)
T PF03000_consen  160 AG-----EEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP  234 (258)
T ss_pred             cc-----cccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence            32     1111122233456789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHhhhccccccCCCCHHHh
Q 007080          440 AISKSERKKICKLMDCRKLSVDAC  463 (619)
Q Consensus       440 ~ls~~Er~~lCr~mdc~KLS~EAc  463 (619)
                      +||++||++||++|||||||+|||
T Consensus       235 ~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  235 GLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             cCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query619
2vpk_A116 Myoneurin; transcription regulation, transcription 8e-08
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 2e-07
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 3e-07
3b84_A119 Zinc finger and BTB domain-containing protein 48; 1e-06
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 1e-06
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 1e-06
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 2e-06
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 2e-06
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 3e-06
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 6e-06
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 3e-05
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 7e-05
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 29  TDVIVVVDDIKFHLHKFPLLSKSACLQKLVATANEANNNEVDISDIPGGPSAFETCAKFC 88
            D  +V+ + +F  H+  L S S     +   +   NN  +D S +      F+   +F 
Sbjct: 23  CDCTIVIGEFQFKAHRNVLASFSEYFGAIY-RSTSENNVFLDQSQVK--ADGFQKLLEFI 79

Query: 89  YGMTVTLNAYNVVAARCAAEYLGMHESVE 117
           Y  T+ L+++NV     AA+YL + E V 
Sbjct: 80  YTGTLNLDSWNVKEIHQAADYLKVEEVVT 108
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query619
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.95
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.95
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.84
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.84
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.83
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.83
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.82
2vpk_A116 Myoneurin; transcription regulation, transcription 99.82
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.82
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.82
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.81
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.81
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.81
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.81
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.81
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.8
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.8
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.79
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.77
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.73
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.35
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.18
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.05
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.86
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.31
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.28
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.22
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.63
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.38
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 96.75
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.68
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.9
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 92.95
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 91.6
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 91.59
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 90.43
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.95  E-value=3.4e-29  Score=251.37  Aligned_cols=227  Identities=13%  Similarity=0.151  Sum_probs=167.7

Q ss_pred             eeeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-c--ccCCCeEecCCCCCCHHHHHHHHHhhcCceEeecc
Q 007080           21 RYVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-N--EANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNA   97 (619)
Q Consensus        21 ~~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~--e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~   97 (619)
                      .++.++.+|||+|.|||+.|++||.+|+++|+||++||+.. .  ++...+|.|++++  +++|+.+++|+|||++.++.
T Consensus        24 ~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~  101 (256)
T 3hve_A           24 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNE  101 (256)
T ss_dssp             TCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-
T ss_pred             HHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCcccH
Confidence            47899999999999999999999999999999999999874 3  5567799999997  79999999999999999999


Q ss_pred             ccHhHHHHhHhhhCccccccccchHHHHHHHHHHhhhhhhhhHHHHHhchhchhhhhhhhCchhHHHHHHHHHhccccCC
Q 007080           98 YNVVAARCAAEYLGMHESVEKGNFVYKIDVFISSSILRSWKDSIIVLQTTKSLLPMSEELKVASHCIEAIATKACVDVSK  177 (619)
Q Consensus        98 ~NV~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~~l~~sw~dsi~~L~~C~~L~~~Ae~l~iv~rcidsLA~kA~~d~~~  177 (619)
                      +||..++.||++|||++      |+..|+.||.+.+         ...||..++.+|+.+++     +.|..++.     
T Consensus       102 ~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l---------~~~n~~~i~~~A~~~~~-----~~L~~~~~-----  156 (256)
T 3hve_A          102 DTIQDVVQAADLLLLTD------LKTLCCEFLEGCI---------AAENCIGIRDFALHYCL-----HHVHYLAT-----  156 (256)
T ss_dssp             CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTC---------CSSTTHHHHHHHHHTTC-----HHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHChHH------HHHHHHHHHHhhC---------CHhhHHHHHHHHHHcCc-----HHHHHHHH-----
Confidence            99999999999999995      8899999999998         46799999999999986     45554443     


Q ss_pred             ccccccccCCCCCCCCCCCCCCCcccccCCCCCchhhhccccChhHHHHHHHHHHhccC--CChhHHHHHHHHHHHhhcC
Q 007080          178 VDWSYTYNRKKLPEENGNDPNWNGVRTRAVPKDWWVEDLCELEIDFYKRCIMTIKTKAI--LSNEVIGEALKAYAYRRLS  255 (619)
Q Consensus       178 ~~~s~t~~~~~~~~~~~~~~~~~~~r~~~~~~dWW~EDL~~L~idl~~rVI~am~s~g~--~~~e~I~~aL~~Ya~~~L~  255 (619)
                         .|.                   ..++ ...+-.+++..|+.+.+..+   +++..+  .+++.|+++++.|+++..+
T Consensus       157 ---~~i-------------------~~~f-~~v~~~~~f~~L~~~~l~~l---L~~d~L~v~~E~~v~~av~~W~~~~~~  210 (256)
T 3hve_A          157 ---EYL-------------------ETHF-RDVSSTEEFLELSPQKLKEV---ISLEKLNVGNERYVFEAVIRWIAHDTE  210 (256)
T ss_dssp             ---HHH-------------------HHHH-HHHTTCHHHHSSCHHHHHHH---HHCC-------CTTHHHHTTTCCC--C
T ss_pred             ---HHH-------------------HHHH-HHHhCCcchhcCCHHHHHHH---HccCCCCCCCHHHHHHHHHHHHHcCHH
Confidence               111                   0111 11233578999999995554   444443  4577899999999998876


Q ss_pred             CCccccccCCchhhhhhHHHHHHHhcCCCCCCcchHHHHHHHHHhhhhcCC-HHHHHHHHH
Q 007080          256 GFSKGMIQSGNVGKYRSIVDAVVWLLPAEKGSVSCSFLLKLLKAAIIVDSG-DMVKAQLVR  315 (619)
Q Consensus       256 ~~~~~~~~~~~~~~~r~LLEtIV~LLP~ek~svsc~FLf~LLR~A~~L~as-~~Cr~~LEk  315 (619)
                      .+.         .....|++.| + +    +.+|..||...++...++..+ +.||..|++
T Consensus       211 ~R~---------~~~~~ll~~V-R-f----~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          211 IRK---------VHMKDVMSAL-W-V----SGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             CST---------TTHHHHHHHH-H-H----HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             HHH---------HHHHHHHHhC-C-C----CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence            554         3567899998 7 4    468889999999999999888 789998875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 619
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 2e-09
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 4e-09
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 2e-09
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 25  SELATDVIVVVDDIKFHLHKFPLLSKSA-CLQKLVATANEANNNEVDISDIPGGPSAFET 83
            ++ TDV++VV   +F  HK  L++ S               +      +I   P  F  
Sbjct: 22  RDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNI 79

Query: 84  CAKFCYGMTVTLNAYNVVAARCAAEYLGMHESVEK 118
              F Y   + L   N++A    A YL M   V+ 
Sbjct: 80  LLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 114
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query619
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.83
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.83
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.45
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.15
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.33
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 95.83
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.74
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 90.8
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 88.79
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.5e-22  Score=175.57  Aligned_cols=102  Identities=25%  Similarity=0.332  Sum_probs=91.9

Q ss_pred             eeccCcceeEEEEECCEEEeecCcccccCCHHHHHHhccc-cccCCCeEecCCCCCCHHHHHHHHHhhcCceEeeccccH
Q 007080           22 YVASELATDVIVVVDDIKFHLHKFPLLSKSACLQKLVATA-NEANNNEVDISDIPGGPSAFETCAKFCYGMTVTLNAYNV  100 (619)
Q Consensus        22 ~~~~g~~cDV~I~Vgg~~F~lHK~vLas~S~yFr~Lf~~~-~e~~~~~V~L~d~pgGaeaFelv~~FcYg~~i~It~~NV  100 (619)
                      ++..|.+|||+|.|+|++|++||.+|+++|+||++||.+. .+.....+.+++++  +++|+.+++|+|||++.|+.+||
T Consensus        19 l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~--~~~f~~ll~~~Ytg~~~i~~~~v   96 (122)
T d1r29a_          19 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYTSRLNLREGNI   96 (122)
T ss_dssp             HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTTH
T ss_pred             HHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccC--HHHHHHHHhhhcCCeecCchhhH
Confidence            6788999999999999999999999999999999999875 44444445567886  69999999999999999999999


Q ss_pred             hHHHHhHhhhCccccccccchHHHHHHHHHH
Q 007080          101 VAARCAAEYLGMHESVEKGNFVYKIDVFISS  131 (619)
Q Consensus       101 ~~L~cAAe~LqM~e~~~~gNL~~~ce~FL~~  131 (619)
                      ..++.||++|||++      |++.|++||+.
T Consensus        97 ~~ll~~A~~l~i~~------L~~~C~~~L~~  121 (122)
T d1r29a_          97 MAVMATAMYLQMEH------VVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHCcHH------HHHHHHHHHHh
Confidence            99999999999994      88999999985
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure